BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2600
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2HXS|A Chain A, Crystal Structure Of Rab28a Gtpase In The Inactive
(Gdp-3'p- Bound) Form
pdb|3E5H|A Chain A, Crystal Structure Of Rab28 Gtpase In The Active
(Gppnhp-Bound) Form
Length = 178
Score = 60.1 bits (144), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 142
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 143 QENGFSSHFVSAKTGDSVFL 162
>pdb|3RAB|A Chain A, Gppnhp-bound Rab3a At 2.0 A Resolution
Length = 169
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 82 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 139
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 140 LGFEFFEASAK 150
>pdb|3DZ8|A Chain A, Crystal Structure Of Human Rab3b Gtpase Bound With Gdp
Length = 191
Score = 50.8 bits (120), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 100 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 157
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 158 LGFDFFEASAK 168
>pdb|2IEZ|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|H Chain H, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IEZ|I Chain I, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 220
Score = 49.7 bits (117), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 98 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 157 YGIPYFETSAATGQN 171
>pdb|2IF0|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
pdb|2IF0|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Monoclinic Space Group
Length = 200
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P + L+ NK D+ QR V + +LA+
Sbjct: 98 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPD-IVLIGNKADLPDQREVNERQARELAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 157 YGIPYFETSAATGQN 171
>pdb|2F7S|A Chain A, The Crystal Structure Of Human Rab27b Bound To Gdp
pdb|2F7S|B Chain B, The Crystal Structure Of Human Rab27b Bound To Gdp
Length = 217
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 112 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELADK 170
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 171 YGIPYFETSAATGQN 185
>pdb|2EW1|A Chain A, Crystal Structure Of Rab30 In Complex With A Gtp Analogue
Length = 201
Score = 48.9 bits (115), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 102 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 159
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 160 AQDMYYLETSAKESDN 175
>pdb|2Y8E|A Chain A, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
pdb|2Y8E|B Chain B, Crystal Structure Of D. Melanogaster Rab6 Gtpase Bound To
Gmppnp
Length = 179
Score = 48.5 bits (114), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R V+ E + A
Sbjct: 89 VAVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKA 146
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 147 KELNVMFIETSAKAGYNV 164
>pdb|2FE4|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Inactive Gdp-Bound Form
pdb|2FFQ|A Chain A, The Crystal Structure Of Human Neuronal Rab6b In Its
Active Gtpgs-Bound Form
pdb|2E9S|A Chain A, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|B Chain B, Human Neuronal Rab6b In Three Intermediate Forms
pdb|2E9S|C Chain C, Human Neuronal Rab6b In Three Intermediate Forms
Length = 171
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 77 VAVVVYDITNLNSFQQTSKWIDDVRTERGS--DVIIMLVGNKTDLADKRQITIEEGEQRA 134
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L + SA+TG N
Sbjct: 135 KELSVMFIETSAKTGYNV 152
>pdb|3BC1|A Chain A, Crystal Structure Of The Complex Rab27a-slp2a
pdb|3BC1|E Chain E, Crystal Structure Of The Complex Rab27a-slp2a
Length = 195
Score = 48.5 bits (114), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ S P + L NK D+E QR V E +LA+
Sbjct: 98 LLLFDLTNEQSFLNVRNWISQLQMHAYSENPD-IVLCGNKSDLEDQRAVKEEEARELAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 157 YGIPYFETSAANGTN 171
>pdb|3BBP|A Chain A, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|B Chain B, Rab6-Gtp:gcc185 Rab Binding Domain Complex
pdb|3BBP|C Chain C, Rab6-Gtp:gcc185 Rab Binding Domain Complex
Length = 211
Score = 47.0 bits (110), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 91 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 148
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 149 KELNVMFIETSAKAGYNV 166
>pdb|3CWZ|A Chain A, Strucure Of Rab6(Gtp)-R6ip1 Complex
Length = 188
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 81 VAVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKA 138
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 139 KELNVMFIETSAKAGYNV 156
>pdb|2GIL|A Chain A, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|B Chain B, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|C Chain C, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
pdb|2GIL|D Chain D, Structure Of The Extremely Slow Gtpase Rab6a In The Gtp
Bound Form At 1.8 Resolution
Length = 162
Score = 46.6 bits (109), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 2/78 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R V++E + A
Sbjct: 76 VAVVVYDITNVNSFQQTTKWIDDVRTERGS--DVIIMLVGNKTDLADKRQVSIEEGERKA 133
Query: 91 QSLHLHSFAVSARTGDNC 108
+ L++ SA+ G N
Sbjct: 134 KELNVMFIETSAKAGYNV 151
>pdb|1ZBD|A Chain A, Structural Basis Of Rab Effector Specificity: Crystal
Structure Of The Small G Protein Rab3a Complexed With
The Effector Domain Of Rabphilin-3a
Length = 203
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 37/71 (52%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I YDIT+ +SF+++ W + S V LV NK D E +RVV+ ER +LA
Sbjct: 85 ILXYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDXEDERVVSSERGRQLADH 142
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 143 LGFEFFEASAK 153
>pdb|2IL1|A Chain A, Crystal Structure Of A Predicted Human Gtpase In Complex
With Gdp
Length = 192
Score = 46.2 bits (108), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
K +I +YDIT ++F +P W+ + +++ +S + LV NK D E R +T ++ K
Sbjct: 99 AKGIILVYDITKKETFDDLPKWMKM--IDKYASEDAELLLVGNKLDCETDREITRQQGEK 156
Query: 89 LAQSLHLHSFAVSARTGDN 107
AQ + F A DN
Sbjct: 157 FAQQITGMRFC-EASAKDN 174
>pdb|2ZET|A Chain A, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
pdb|2ZET|B Chain B, Crystal Structure Of The Small Gtpase Rab27b Complexed
With The Slp Homology Domain Of Slac2-AMELANOPHILIN
Length = 203
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +D+TS QSF ++ W N P V L+ NK D+ QR V + +LA+
Sbjct: 98 LLXFDLTSQQSFLNVRNWXSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 157 YGIPYFETSAATGQN 171
>pdb|2HEI|A Chain A, Crystal Structure Of Human Rab5b In Complex With Gdp
pdb|2HEI|B Chain B, Crystal Structure Of Human Rab5b In Complex With Gdp
Length = 179
Score = 46.2 bits (108), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ ++F TWV L R++S +AL NK D+ ++R+V E
Sbjct: 81 AQAAIVVYDITNQETFARAKTWVK--ELQRQASPSIVIALAGNKADLANKRMVEYEEAQA 138
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 139 YADDNSLLFMETSAKTAMN 157
>pdb|2IEY|A Chain A, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
pdb|2IEY|B Chain B, Crystal Structure Of Mouse Rab27b Bound To Gdp In
Hexagonal Space Group
Length = 195
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +D+TS QSF ++ W N P + L+ NK D+ QR V + +LA+
Sbjct: 98 LLXFDLTSQQSFLNVRNWXSQLQANAYCENPD-IVLIGNKADLPDQREVNERQARELAEK 156
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 157 YGIPYFETSAATGQN 171
>pdb|4DKX|A Chain A, Crystal Structure Of The Rab 6a'(Q72l)
pdb|4DKX|B Chain B, Crystal Structure Of The Rab 6a'(Q72l)
Length = 216
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT+ SF W+D R S + LV NK D+ +R V++E + A+
Sbjct: 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKAK 146
Query: 92 SLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 147 ELNVMFIETSAKAGYN 162
>pdb|2GF9|A Chain A, Crystal Structure Of Human Rab3d In Complex With Gdp
Length = 189
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ MYDI + +SF ++ W + S V LV NK D+E +RVV E +LA
Sbjct: 99 LLMYDIANQESFAAVQDWAT--QIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLADD 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>pdb|1G17|A Chain A, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
pdb|1G17|B Chain B, Crystal Structure Of Sec4-Guanosine-5'-(Beta,Gamma)-
Imidotriphosphate
Length = 170
Score = 45.8 bits (107), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT ++F +I W +N ++ + LV NK DME RVVT ++ LA+
Sbjct: 79 IILVYDITDERTFTNIKQWFK--TVNEHANDEAQLLLVGNKSDMET-RVVTADQGEALAK 135
Query: 92 SLHLHSFAVSARTGDNC 108
L + SA+ DN
Sbjct: 136 ELGIPFIESSAKNDDNV 152
>pdb|1YZQ|A Chain A, Gppnhp-Bound Rab6 Gtpase
Length = 170
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDIT+ SF W+D R S + LV NK D+ +R V++E + A+
Sbjct: 83 VVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKAKE 140
Query: 93 LHLHSFAVSARTGDNC 108
L++ SA+ G N
Sbjct: 141 LNVMFIETSAKAGYNV 156
>pdb|1EK0|A Chain A, Gppnhp-Bound Ypt51 At 1.48 A Resolution
Length = 170
Score = 45.4 bits (106), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 39/79 (49%), Gaps = 5/79 (6%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ---RVVTLERHAKL 89
+ +YD+T QSF WV H ++S +ALV NK D + R V E KL
Sbjct: 80 LVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDXLQEGGERKVAREEGEKL 137
Query: 90 AQSLHLHSFAVSARTGDNC 108
A+ L F SA+TG+N
Sbjct: 138 AEEKGLLFFETSAKTGENV 156
>pdb|2EQB|A Chain A, Crystal Structure Of The Rab Gtpase Sec4p, The Sec2p Gef
Domain, And Phosphate Complex
Length = 174
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T ++F +I W +N ++ + LV NK DME RVVT ++ LA+
Sbjct: 83 IILVYDVTDERTFTNIKQWFK--TVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAK 139
Query: 92 SLHLHSFAVSARTGDNC 108
L + SA+ DN
Sbjct: 140 ELGIPFIESSAKNDDNV 156
>pdb|3CPH|A Chain A, Crystal Structure Of Sec4 In Complex With Rab-Gdi
Length = 213
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 41/77 (53%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T ++F +I W +N ++ + LV NK DME RVVT ++ LA+
Sbjct: 96 IILVYDVTDERTFTNIKQWFK--TVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAK 152
Query: 92 SLHLHSFAVSARTGDNC 108
L + SA+ DN
Sbjct: 153 ELGIPFIESSAKNDDNV 169
>pdb|2ATV|A Chain A, The Crystal Structure Of Human Rerg In The Gdp Bound State
Length = 196
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
G+ + +YDIT SF + ++ +K T + LV NK D++H R V+ E K
Sbjct: 99 GEGFVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLI-LVGNKADLDHSRQVSTEEGEK 157
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA L + SA TG+
Sbjct: 158 LATELACAFYECSACTGEG 176
>pdb|4DRZ|A Chain A, Crystal Structure Of Human Rab14
Length = 196
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT +++ + +W L ++ T + L+ NK D+E QR VT E + A+
Sbjct: 106 ALMVYDITRRSTYNHLSSW--LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE 163
Query: 92 SLHLHSFAVSARTGDN 107
L SA+TG+N
Sbjct: 164 ENGLLFLEASAKTGEN 179
>pdb|2G6B|A Chain A, Crystal Structure Of Human Rab26 In Complex With A Gtp
Analogue
Length = 180
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T+ SF +I W L ++ + + L+ NK D H+RVV E KLA+
Sbjct: 87 LLLLYDVTNKASFDNIQAW--LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK 144
Query: 92 SLHLHSFAVSARTGDNC 108
L SA+TG N
Sbjct: 145 EYGLPFMETSAKTGLNV 161
>pdb|1Z0F|A Chain A, Gdp-Bound Rab14 Gtpase
Length = 179
Score = 43.9 bits (102), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT +++ + +W L ++ T + L+ NK D+E QR VT E + A+
Sbjct: 91 ALMVYDITRRSTYNHLSSW--LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE 148
Query: 92 SLHLHSFAVSARTGDN 107
L SA+TG+N
Sbjct: 149 ENGLLFLEASAKTGEN 164
>pdb|1TU4|A Chain A, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|B Chain B, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|C Chain C, Crystal Structure Of Rab5-Gdp Complex
pdb|1TU4|D Chain D, Crystal Structure Of Rab5-Gdp Complex
Length = 171
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 80 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 137
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 138 YADDNSLLFXETSAKTSXN 156
>pdb|1G16|A Chain A, Crystal Structure Of Sec4-Gdp
pdb|1G16|B Chain B, Crystal Structure Of Sec4-Gdp
pdb|1G16|C Chain C, Crystal Structure Of Sec4-Gdp
pdb|1G16|D Chain D, Crystal Structure Of Sec4-Gdp
Length = 170
Score = 43.1 bits (100), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT ++F +I W +N ++ + LV NK D E RVVT ++ LA+
Sbjct: 79 IILVYDITDERTFTNIKQWFK--TVNEHANDEAQLLLVGNKSDXET-RVVTADQGEALAK 135
Query: 92 SLHLHSFAVSARTGDNC 108
L + SA+ DN
Sbjct: 136 ELGIPFIESSAKNDDNV 152
>pdb|1N6R|A Chain A, Crystal Structure Of Human Rab5a A30l Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 137 YADDNSLLFMETSAKTSMN 155
>pdb|1N6P|A Chain A, Crystal Structure Of Human Rab5a A30e Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 137 YADDNSLLFMETSAKTSMN 155
>pdb|1N6H|A Chain A, Crystal Structure Of Human Rab5a
pdb|1R2Q|A Chain A, Crystal Structure Of Human Rab5a Gtpase Domain At 1.05 A
Resolution
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 137 YADDNSLLFMETSAKTSMN 155
>pdb|1N6O|A Chain A, Crystal Structure Of Human Rab5a A30k Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 137 YADDNSLLFMETSAKTSMN 155
>pdb|2O52|A Chain A, Crystal Structure Of Human Rab4b In Complex With Gdp
pdb|2O52|B Chain B, Crystal Structure Of Human Rab4b In Complex With Gdp
Length = 200
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS ++++S+ W L +S V L NK D++ +R VT ++ AQ
Sbjct: 101 ALLVYDITSRETYNSLAAW--LTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ 158
Query: 92 SLHLHSFAVSARTGDN 107
L SA TG+N
Sbjct: 159 ENELMFLETSALTGEN 174
>pdb|1TU3|A Chain A, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|B Chain B, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|C Chain C, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|D Chain D, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
pdb|1TU3|E Chain E, Crystal Structure Of Rab5 Complex With Rabaptin5
C-Terminal Domain
Length = 171
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 80 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 137
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 138 YADDNSLLFMETSAKTSMN 156
>pdb|1N6I|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp
pdb|1N6K|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gdp And Aluminum Fluoride
pdb|1N6L|A Chain A, Crystal Structure Of Human Rab5a A30p Mutant Complex With
Gtp
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 137 YADDNSLLFMETSAKTSMN 155
>pdb|1N6N|A Chain A, Crystal Structure Of Human Rab5a A30r Mutant Complex With
Gppnhp
Length = 170
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 79 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 136
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 137 YADDNSLLFMETSAKTSMN 155
>pdb|3MJH|A Chain A, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
pdb|3MJH|C Chain C, Crystal Structure Of Human Rab5a In Complex With The C2h2
Zinc Finger Of Eea1
Length = 168
Score = 43.1 bits (100), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 37/79 (46%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +SF WV L R++S +AL NK D+ ++R V +
Sbjct: 78 AQAAIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQS 135
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 136 YADDNSLLFMETSAKTSMN 154
>pdb|1D5C|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab6 Complexed
With Gdp
Length = 162
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT+ QSF + W+ LN + +ALV NK D+ R VT E + AQ
Sbjct: 77 AIVVYDITNRQSFENTTKWIQDI-LNERGK-DVIIALVGNKTDLGDLRKVTYEEGXQKAQ 134
Query: 92 SLHLHSFAVSARTGDNCWV 110
+ SA+ G N V
Sbjct: 135 EYNTXFHETSAKAGHNIKV 153
>pdb|2OCY|C Chain C, Complex Of The Guanine Exchange Factor Sec2p And The Rab
Gtpase Sec4p
Length = 170
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T ++F +I W +N ++ + LV NK D E RVVT ++ LA+
Sbjct: 79 IILVYDVTDERTFTNIKQWFK--TVNEHANDEAQLLLVGNKSDXET-RVVTADQGEALAK 135
Query: 92 SLHLHSFAVSARTGDNC 108
L + SA+ DN
Sbjct: 136 ELGIPFIESSAKNDDNV 152
>pdb|3TW8|B Chain B, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
pdb|3TW8|D Chain D, Gef Domain Of Dennd 1b In Complex With Rab Gtpase Rab35
Length = 181
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YD+TS +SF ++ W L +N+ + LV NK D ++VV E K A
Sbjct: 85 VIVVYDVTSAESFVNVKRW--LHEINQNCDDVCRI-LVGNKNDDPERKVVETEDAYKFAG 141
Query: 92 SLHLHSFAVSAR 103
+ + F SA+
Sbjct: 142 QMGIQLFETSAK 153
>pdb|3SFV|A Chain A, Crystal Structure Of The Gdp-Bound Rab1a S25n Mutant In
Complex With The Coiled-Coil Domain Of Lida From
Legionella Pneumophila
Length = 181
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 92 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 149
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 150 SLGIPFLETSAKNATN 165
>pdb|1Z0D|A Chain A, Gdp-bound Rab5c Gtpase
pdb|1Z0D|C Chain C, Gdp-bound Rab5c Gtpase
Length = 167
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +F WV L R++S +AL NK D+ +R V +
Sbjct: 78 AQAAIVVYDITNTDTFARAKNWVK--ELQRQASPNIVIALAGNKADLASKRAVEFQEAQA 135
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 136 YADDNSLLFMETSAKTAMN 154
>pdb|4FMC|B Chain B, Espg-Rab1 Complex
pdb|4FMC|D Chain D, Espg-Rab1 Complex
pdb|4FMD|B Chain B, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FMD|D Chain D, Espg-Rab1 Complex Structure At 3.05 A
pdb|4FME|B Chain B, Espg-Rab1-Arf6 Complex
pdb|4FME|E Chain E, Espg-Rab1-Arf6 Complex
Length = 171
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 82 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 139
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 140 SLGIPFLETSAKNATN 155
>pdb|1Z07|A Chain A, Gppnhp-Bound Rab5c G55q Mutant Gtpase
Length = 166
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +F WV L R++S +AL NK D+ +R V +
Sbjct: 78 AQAAIVVYDITNTDTFARAKNWVK--ELQRQASPNIVIALAGNKADLASKRAVEFQEAQA 135
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 136 YADDNSLLFMETSAKTAMN 154
>pdb|3TKL|A Chain A, Crystal Structure Of The Gtp-Bound Rab1a In Complex With
The Coiled- Coil Domain Of Lida From Legionella
Pneumophila
Length = 196
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 92 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 149
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 150 SLGIPFLETSAKNATN 165
>pdb|1HUQ|A Chain A, 1.8a Crystal Structure Of The Monomeric Gtpase Rab5c
(Mouse)
Length = 164
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 2/79 (2%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+ I +YDIT+ +F WV L R++S +AL NK D+ +R V +
Sbjct: 76 AQAAIVVYDITNTDTFARAKNWVK--ELQRQASPNIVIALAGNKADLASKRAVEFQEAQA 133
Query: 89 LAQSLHLHSFAVSARTGDN 107
A L SA+T N
Sbjct: 134 YADDNSLLFMETSAKTAMN 152
>pdb|4FMB|B Chain B, Vira-Rab1 Complex Structure
pdb|4FMB|D Chain D, Vira-Rab1 Complex Structure
pdb|4FMB|F Chain F, Vira-Rab1 Complex Structure
Length = 171
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 82 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 139
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 140 SLGIPFLETSAKNATN 155
>pdb|2FOL|A Chain A, Crystal Structure Of Human Rab1a In Complex With Gdp
Length = 191
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 101 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 158
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 159 SLGIPFLETSAKNATN 174
>pdb|4FMD|F Chain F, Espg-Rab1 Complex Structure At 3.05 A
Length = 164
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 75 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 132
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 133 SLGIPFLETSAKNATN 148
>pdb|2BMD|A Chain A, High Resolution Structure Of Gdp-Bound Human Rab4a
pdb|2BME|A Chain A, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|B Chain B, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|C Chain C, High Resolution Structure Of Gppnhp-Bound Human Rab4a
pdb|2BME|D Chain D, High Resolution Structure Of Gppnhp-Bound Human Rab4a
Length = 186
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS ++++++ W L +S + L NK D++ R VT ++ AQ
Sbjct: 86 ALLVYDITSRETYNALTNW--LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ 143
Query: 92 SLHLHSFAVSARTGDN 107
L SA TG+N
Sbjct: 144 ENELMFLETSALTGEN 159
>pdb|1YZT|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
pdb|1YZT|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.05 A Resolution
Length = 184
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT SF + WV L + + +V NK D+E +R V+++ A+
Sbjct: 96 AILVYDITDEDSFQKVKNWVK--ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE 153
Query: 92 SLHLHSFAVSAR 103
S+ + SA+
Sbjct: 154 SVGAKHYHTSAK 165
>pdb|1Z08|A Chain A, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|B Chain B, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|C Chain C, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
pdb|1Z08|D Chain D, Gppnhp-Bound Rab21 Q53g Mutant Gtpase
Length = 170
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT SF + WV L + + +V NK D+E +R V+++ A+
Sbjct: 82 AILVYDITDEDSFQKVKNWVK--ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE 139
Query: 92 SLHLHSFAVSAR 103
S+ + SA+
Sbjct: 140 SVGAKHYHTSAK 151
>pdb|3L0I|B Chain B, Complex Structure Of Sidm/drra With The Wild Type Rab1
pdb|3L0I|D Chain D, Complex Structure Of Sidm/drra With The Wild Type Rab1
Length = 199
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 109 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 166
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 167 SLGIPFLETSAKNATN 182
>pdb|1YZU|A Chain A, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1YZU|B Chain B, Gppnhp-Bound Rab21 Gtpase At 2.50 A Resolution
pdb|1Z0I|A Chain A, Gdp-Bound Rab21 Gtpase
pdb|2OT3|B Chain B, Crystal Structure Of Rabex-5 Vps9 Domain In Complex With
Nucleotide Free Rab21
Length = 170
Score = 40.8 bits (94), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT SF + WV L + + +V NK D+E +R V+++ A+
Sbjct: 82 AILVYDITDEDSFQKVKNWVK--ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE 139
Query: 92 SLHLHSFAVSAR 103
S+ + SA+
Sbjct: 140 SVGAKHYHTSAK 151
>pdb|1KY2|A Chain A, Gppnhp-Bound Ypt7p At 1.6 A Resolution
pdb|1KY3|A Chain A, Gdp-Bound Ypt7p At 1.35 A Resolution
Length = 182
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 46/89 (51%), Gaps = 6/89 (6%)
Query: 33 IFMYDITSGQSFHSIPTWVDLF--HLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-L 89
+ +YD+T+ SF +I +W D F H N S ++ NK D E + + E+ A+ L
Sbjct: 86 VLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQEL 145
Query: 90 AQSL-HLHSFAVSARTGDNCWVNTRTPEI 117
A+SL + F SA+ N V+T EI
Sbjct: 146 AKSLGDIPLFLTSAKNAIN--VDTAFEEI 172
>pdb|2BCG|Y Chain Y, Structure Of Doubly Prenylated Ypt1:gdi Complex
Length = 206
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+ + W L ++R +++ LV NK D++ +RVV + + A
Sbjct: 84 IIIVYDVTDQESFNGVKMW--LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 92 SLHLHSFAVSA 102
+ + SA
Sbjct: 142 ANKMPFLETSA 152
>pdb|1UKV|Y Chain Y, Structure Of Rabgdp-Dissociation Inhibitor In Complex With
Prenylated Ypt1 Gtpase
pdb|3CUE|F Chain F, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|L Chain L, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|R Chain R, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
pdb|3CUE|X Chain X, Crystal Structure Of A Trapp Subassembly Activating The
Rab Ypt1p
Length = 206
Score = 40.4 bits (93), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+ + W L ++R +++ LV NK D++ +RVV + + A
Sbjct: 84 IIIVYDVTDQESFNGVKMW--LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 92 SLHLHSFAVSA 102
+ + SA
Sbjct: 142 ANKMPFLETSA 152
>pdb|2RHD|A Chain A, Crystal Structure Of Cryptosporidium Parvum Small Gtpase
Rab1a
Length = 175
Score = 40.4 bits (93), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T SF ++ W+ ++R + LV NK D+ +RVVT + +LA
Sbjct: 85 IIIVYDVTDRDSFDNVKQWIQ--EIDRYAMENVNKLLVGNKCDLVSKRVVTSDEGRELAD 142
Query: 92 SLHLHSFAVSARTGDN 107
S + SA+ N
Sbjct: 143 SHGIKFIETSAKNAYN 158
>pdb|3QBT|A Chain A, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|C Chain C, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|E Chain E, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3QBT|G Chain G, Crystal Structure Of Ocrl1 540-678 In Complex With
Rab8a:gppnhp
pdb|3TNF|A Chain A, Lida From Legionella In Complex With Active Rab8a
Length = 174
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ +SF +I W+ ++ +S ++ NK D+ +R V+ ER KLA
Sbjct: 82 IMLVYDITNEKSFDNIRNWIR--NIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL 139
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+ N
Sbjct: 140 DYGIKFMETSAKANIN 155
>pdb|2FU5|C Chain C, Structure Of Rab8 In Complex With Mss4
pdb|2FU5|D Chain D, Structure Of Rab8 In Complex With Mss4
Length = 183
Score = 40.0 bits (92), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ +SF +I W+ ++ +S ++ NK D+ +R V+ ER KLA
Sbjct: 84 IMLVYDITNEKSFDNIRNWIR--NIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL 141
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+ N
Sbjct: 142 DYGIKFMETSAKANIN 157
>pdb|1Z0A|A Chain A, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|B Chain B, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|C Chain C, Gdp-Bound Rab2a Gtpase
pdb|1Z0A|D Chain D, Gdp-Bound Rab2a Gtpase
Length = 174
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 42/84 (50%), Gaps = 5/84 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT +F+ + TW++ + S++ + L+ NK D+E +R V E A+
Sbjct: 86 ALLVYDITRRDTFNHLTTWLE--DARQHSNSNMVIMLIGNKSDLESRREVKKEEGEAFAR 143
Query: 92 SLHLHSFAVSARTGDN---CWVNT 112
L SA+T N ++NT
Sbjct: 144 EHGLIFMETSAKTASNVEEAFINT 167
>pdb|1YZN|A Chain A, Gppnhp-Bound Ypt1p Gtpase
Length = 185
Score = 39.7 bits (91), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+ + W L ++R +++ LV NK D++ +RVV + + A
Sbjct: 97 IIIVYDVTDQESFNGVKMW--LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 154
Query: 92 SLHLHSFAVSA 102
+ + SA
Sbjct: 155 ANKMPFLETSA 165
>pdb|2A5J|A Chain A, Crystal Structure Of Human Rab2b
Length = 191
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 43/84 (51%), Gaps = 5/84 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT ++F+ + +W++ + SS+ + L+ NK D+E +R V E A+
Sbjct: 97 ALLVYDITRRETFNHLTSWLE--DARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR 154
Query: 92 SLHLHSFAVSARTGDN---CWVNT 112
L SA+T N ++NT
Sbjct: 155 EHGLIFMETSAKTACNVEEAFINT 178
>pdb|1Z0K|A Chain A, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
pdb|1Z0K|C Chain C, Structure Of Gtp-Bound Rab4q67l Gtpase In Complex With The
Central Rab Binding Domain Of Rabenosyn-5
Length = 172
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS ++++++ W L +S + L NK D++ R VT ++ AQ
Sbjct: 84 ALLVYDITSRETYNALTNW--LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ 141
Query: 92 SLHLHSFAVSARTGDN 107
L SA TG++
Sbjct: 142 ENELMFLETSALTGED 157
>pdb|1YU9|A Chain A, Gppnhp-Bound Rab4a
Length = 175
Score = 39.7 bits (91), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS ++++++ W L +S + L NK D++ R VT ++ AQ
Sbjct: 87 ALLVYDITSRETYNALTNW--LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ 144
Query: 92 SLHLHSFAVSARTGDN 107
L SA TG++
Sbjct: 145 ENELMFLETSALTGED 160
>pdb|2EFC|B Chain B, Ara7-GdpATVPS9A
pdb|2EFC|D Chain D, Ara7-GdpATVPS9A
pdb|2EFD|B Chain B, Ara7ATVPS9A
pdb|2EFD|D Chain D, Ara7ATVPS9A
pdb|2EFE|B Chain B, Ara7-Gdpnh2ATVPS9A
pdb|2EFE|D Chain D, Ara7-Gdpnh2ATVPS9A
pdb|2EFH|B Chain B, Ara7-GdpATVPS9A(D185N)
pdb|2EFH|D Chain D, Ara7-GdpATVPS9A(D185N)
pdb|4G01|B Chain B, Ara7-gdp-ca2+/vps9a
Length = 181
Score = 39.3 bits (90), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 7/93 (7%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I ++D+T+ SF WV L + + +AL NK D+ R VT E AQ
Sbjct: 88 AIIVFDVTNQASFERAKKWVQ--ELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ 145
Query: 92 SLHLHSFAVSARTGDNC-----WVNTRTPEINP 119
L SA+T N + R P + P
Sbjct: 146 ENGLFFMETSAKTATNVKEIFYEIARRLPRVQP 178
>pdb|3BFK|A Chain A, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|B Chain B, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|C Chain C, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|D Chain D, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
pdb|3BFK|E Chain E, Crystal Structure Of Plasmodium Falciparum Rab11a In
Complex With Gdp
Length = 181
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 34/77 (44%), Gaps = 2/77 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT SF +I W L L + + + LV NK D++H RV+ + A+
Sbjct: 84 ALLVYDITKKNSFENIEKW--LKELRDNADSNIVILLVGNKSDLKHLRVINDNDATQYAK 141
Query: 92 SLHLHSFAVSARTGDNC 108
L SA N
Sbjct: 142 KEKLAFIETSALEATNV 158
>pdb|3JZA|A Chain A, Crystal Structure Of Human Rab1b In Complex With The Gef
Domain Of DrraSIDM FROM LEGIONELLA PNEUMOPHILA
pdb|3NKV|A Chain A, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|3NKV|B Chain B, Crystal Structure Of Rab1b Covalently Modified With Amp At
Y77
pdb|4HLQ|B Chain B, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|D Chain D, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|F Chain F, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|H Chain H, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
pdb|4HLQ|J Chain J, Crystal Structure Of Human Rab1b Bound To Gdp And Bef3 In
Complex With The Gap Domain Of Tbc1d20 From Homo Sapiens
Length = 175
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +S+ ++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 85 IIVVYDVTDQESYANVKQW--LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFAD 142
Query: 92 SLHLHSFAVSARTGDNC 108
SL + SA+ N
Sbjct: 143 SLGIPFLETSAKNATNV 159
>pdb|2P5S|A Chain A, Rab Domain Of Human Rasef In Complex With Gdp
pdb|2P5S|B Chain B, Rab Domain Of Human Rasef In Complex With Gdp
Length = 199
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 38/82 (46%), Gaps = 8/82 (9%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM------EHQRVVTLER 85
V+ +YD+T +SF +I WVD+ + P + LV NK D+ E Q+ V
Sbjct: 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHETVP--IMLVGNKADIRDTAATEGQKCVPGHF 161
Query: 86 HAKLAQSLHLHSFAVSARTGDN 107
KLA + SA+ G N
Sbjct: 162 GEKLAMTYGALFCETSAKDGSN 183
>pdb|2YC2|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC2|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|C Chain C, Intraflagellar Transport Complex 25-27 From Chlamydomonas
pdb|2YC4|D Chain D, Intraflagellar Transport Complex 25-27 From Chlamydomonas
Length = 208
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 35/72 (48%), Gaps = 2/72 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKS-STPTYVALVANKGDMEHQR-VVTLERHAKLA 90
I ++D++S +SF S W +L R P LVANK D+ QR V L+ A
Sbjct: 101 ILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDWA 160
Query: 91 QSLHLHSFAVSA 102
+ L F VSA
Sbjct: 161 TTNTLDFFDVSA 172
>pdb|4I1O|A Chain A, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|C Chain C, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|E Chain E, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
pdb|4I1O|G Chain G, Crystal Structure Of The Legionella Pneumophila Gap Domain
Of Lepb In Complex With Rab1b Bound To Gdp And Bef3
Length = 181
Score = 38.5 bits (88), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +S+ ++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 85 IIVVYDVTDQESYANVKQW--LQEIDRYASENVNKLLVGNKSDLTTKKVVDNTTAKEFAD 142
Query: 92 SLHLHSFAVSARTGDNC 108
SL + SA+ N
Sbjct: 143 SLGIPFLETSAKNATNV 159
>pdb|2WWX|A Chain A, Crystal Structure Of The SidmDRRA(GEFGDF DOMAIN)-Rab1
(Gtpase Domain) Complex
Length = 175
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV K D+ ++VV + A
Sbjct: 84 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGIKCDLTTKKVVDYTTAKEFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 142 SLGIPFLETSAKNATN 157
>pdb|1Z06|A Chain A, Gppnhp-Bound Rab33 Gtpase
Length = 189
Score = 37.0 bits (84), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+F+YD+T+ SFHS+P W++ + ++ + LV NK D+ V + K A
Sbjct: 97 VVFVYDMTNMASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLRSAIQVPTDLAQKFAD 155
Query: 92 SLHLHSFAVSAR 103
+ + F SA+
Sbjct: 156 THSMPLFETSAK 167
>pdb|2HUP|A Chain A, Crystal Structure Of Human Rab43 In Complex With Gdp
pdb|2HUP|B Chain B, Crystal Structure Of Human Rab43 In Complex With Gdp
Length = 201
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 2/60 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I YDIT SF S+P W++ + + + + L+ NK D+ R V+L LA+
Sbjct: 105 AILAYDITKRSSFLSVPHWIE--DVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAE 162
>pdb|3CPJ|B Chain B, Crystal Structure Of Ypt31 In Complex With Yeast Rab-Gdi
Length = 223
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI+ S+ + W L L + V L+ NK D+ H R V E AQ
Sbjct: 89 ALIVYDISKSSSYENCNHW--LSELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ 146
Query: 92 SLHLHSFAVSARTGDN 107
L SA +N
Sbjct: 147 ENQLLFTETSALNSEN 162
>pdb|1YVD|A Chain A, Gppnhp-Bound Rab22 Gtpase
Length = 169
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
I +YDIT ++F ++ WV L + VA+ NK D+ R V +ER AK A
Sbjct: 82 IIVYDITKEETFSTLKNWVR--ELRQHGPPSIVVAIAGNKCDLTDVREV-MERDAKDYAD 138
Query: 92 SLHLHSFAVSARTGDN 107
S+H SA+ N
Sbjct: 139 SIHAIFVETSAKNAIN 154
>pdb|1Z0J|A Chain A, Structure Of Gtp-Bound Rab22q64l Gtpase In Complex With
The Minimal Rab Binding Domain Of Rabenosyn-5
Length = 170
Score = 36.6 bits (83), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 4/76 (5%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQ 91
I +YDIT ++F ++ WV L + VA+ NK D+ R V +ER AK A
Sbjct: 83 IIVYDITKEETFSTLKNWVR--ELRQHGPPSIVVAIAGNKCDLTDVREV-MERDAKDYAD 139
Query: 92 SLHLHSFAVSARTGDN 107
S+H SA+ N
Sbjct: 140 SIHAIFVETSAKNAIN 155
>pdb|2ERY|A Chain A, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
pdb|2ERY|B Chain B, The Crystal Structure Of The Ras Related Protein Rras2
(Rras2) In The Gdp Bound State
Length = 172
Score = 36.2 bits (82), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWV-DLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + ++ +T SF I + + + + P + L+ NK D++HQR VT E
Sbjct: 77 GEGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFP--MILIGNKADLDHQRQVTQEEGQ 134
Query: 88 KLAQSLHLHSFAVSAR 103
+LA+ L + SA+
Sbjct: 135 QLARQLKVTYMEASAK 150
>pdb|2G77|B Chain B, Crystal Structure Of Gyp1 Tbc Domain In Complex With Rab33
Gtpase Bound To Gdp And Alf3
Length = 198
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+F+YD T+ SFHS+P W++ + ++ + LV NK D+ V + K A
Sbjct: 106 VVFVYDXTNXASFHSLPAWIEECKQHLLANDIPRI-LVGNKCDLRSAIQVPTDLAQKFAD 164
Query: 92 SLHLHSFAVSAR 103
+ F SA+
Sbjct: 165 THSXPLFETSAK 176
>pdb|1VG0|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With Monoprenylated Rab7 Protein
pdb|1VG8|A Chain A, Gppnhp-Bound Rab7
pdb|1VG8|B Chain B, Gppnhp-Bound Rab7
pdb|1VG8|C Chain C, Gppnhp-Bound Rab7
pdb|1VG8|D Chain D, Gppnhp-Bound Rab7
Length = 207
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALV--ANKGDMEHQRVVTLERHAKL 89
+ ++D+T+ +F ++ +W D F + P V NK D+E+++V T A
Sbjct: 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143
Query: 90 AQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121
++ F SA+ N +T N LK
Sbjct: 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|1T91|A Chain A, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|B Chain B, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|C Chain C, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1T91|D Chain D, Crystal Structure Of Human Small Gtpase Rab7(Gtp)
pdb|1YHN|A Chain A, Structure Basis Of Rilp Recruitment By Rab7
Length = 207
Score = 35.8 bits (81), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 2/92 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALV--ANKGDMEHQRVVTLERHAKL 89
+ ++D+T+ +F ++ +W D F + P V NK D+E+++V T A
Sbjct: 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143
Query: 90 AQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121
++ F SA+ N +T N LK
Sbjct: 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|1VG1|A Chain A, Gdp-bound Rab7
pdb|1VG9|B Chain B, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|D Chain D, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|F Chain F, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
pdb|1VG9|H Chain H, The Crystal Structures Of The Rep-1 Protein In Complex
With C-Terminally Truncated Rab7 Protein
Length = 185
Score = 35.4 bits (80), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 41/91 (45%), Gaps = 2/91 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALV--ANKGDMEHQRVVTLERHAKLA 90
+ ++D+T+ +F ++ +W D F + P V NK D+E+++V T A
Sbjct: 85 VLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWCY 144
Query: 91 QSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121
++ F SA+ N +T N LK
Sbjct: 145 SKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|2FG5|A Chain A, Crystal Structure Of Human Rab31 In Complex With A Gtp
Analogue
Length = 192
Score = 35.0 bits (79), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 41/93 (44%), Gaps = 7/93 (7%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT SF+++ WV L +A+ NK D+ R V L+ + A+
Sbjct: 99 AVIVYDITKQDSFYTLKKWVK--ELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE 156
Query: 92 SLHLHSFAVSARTGDNC-----WVNTRTPEINP 119
S+ SA+ N ++ + P ++P
Sbjct: 157 SIGAIVVETSAKNAINIEELFQGISRQIPPLDP 189
>pdb|3LAW|A Chain A, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|B Chain B, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|C Chain C, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|D Chain D, Structure Of Gtp-Bound L129f Mutant Rab7
pdb|3LAW|E Chain E, Structure Of Gtp-Bound L129f Mutant Rab7
Length = 207
Score = 35.0 bits (79), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 40/92 (43%), Gaps = 2/92 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALV--ANKGDMEHQRVVTLERHAKL 89
+ ++D+T+ +F ++ +W D F + P V NK D E+++V T A
Sbjct: 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDFENRQVATKRAQAWC 143
Query: 90 AQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121
++ F SA+ N +T N LK
Sbjct: 144 YSKNNIPYFETSAKEAINVEQAFQTIARNALK 175
>pdb|2FN4|A Chain A, The Crystal Structure Of Human Ras-Related Protein, Rras,
In The Gdp- Bound State
Length = 181
Score = 33.5 bits (75), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 28 CGKIVIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
G + ++ I QSF+ + + + + + P V LV NK D+E QR V
Sbjct: 80 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFP--VVLVGNKADLESQRQVPRSEA 137
Query: 87 AKLAQSLHLHSFAVSAR 103
+ S H+ F SA+
Sbjct: 138 SAFGASHHVAYFEASAK 154
>pdb|3RWM|B Chain B, Crystal Structure Of Ypt32 In Complex With Gppnhp
pdb|3RWO|B Chain B, Crystal Structure Of Ypt32 In Complex With Gdp
pdb|3RWO|A Chain A, Crystal Structure Of Ypt32 In Complex With Gdp
Length = 185
Score = 33.1 bits (74), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 2/77 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI+ S+ + W L L + V L+ NK D+ H R V + A
Sbjct: 86 ALIVYDISKSSSYENCNHW--LTELRENADDNVAVGLIGNKSDLAHLRAVPTDEAKNFAM 143
Query: 92 SLHLHSFAVSARTGDNC 108
+ SA DN
Sbjct: 144 ENQMLFTETSALNSDNV 160
>pdb|3T5G|A Chain A, Structure Of Fully Modified Farnesylated Rheb In Complex
With Pde6d
Length = 181
Score = 32.7 bits (73), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 33 IFMYDITSGQSFHSIPTW-VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +Y +TS +SF I L + K P + LV NK D+ +RV++ E LA+
Sbjct: 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP--IMLVGNKKDLHMERVISYEEGKALAE 139
Query: 92 SLHLHSFAVSAR 103
S + SA+
Sbjct: 140 SWNAAFLESSAK 151
>pdb|1XTQ|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gdp
pdb|1XTR|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With
Gppnhp
pdb|1XTS|A Chain A, Structure Of Small Gtpase Human Rheb In Complex With Gtp
Length = 177
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 33 IFMYDITSGQSFHSIPTW-VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +Y +TS +SF I L + K P + LV NK D+ +RV++ E LA+
Sbjct: 82 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP--IMLVGNKKDLHMERVISYEEGKALAE 139
Query: 92 SLHLHSFAVSAR 103
S + SA+
Sbjct: 140 SWNAAFLESSAK 151
>pdb|2L0X|A Chain A, Solution Structure Of The 21 Kda Gtpase Rheb Bound To Gdp
Length = 169
Score = 32.3 bits (72), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 33 IFMYDITSGQSFHSIPTW-VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +Y +TS +SF I L + K P + LV NK D+ +RV++ E LA+
Sbjct: 77 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP--IMLVGNKKDLHMERVISYEEGKALAE 134
Query: 92 SLHLHSFAVSAR 103
S + SA+
Sbjct: 135 SWNAAFLESSAK 146
>pdb|3SEA|A Chain A, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
pdb|3SEA|B Chain B, Structure Of Rheb-Y35a Mutant In Gdp- And Gmppnp-Bound
Forms
Length = 167
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 35/72 (48%), Gaps = 3/72 (4%)
Query: 33 IFMYDITSGQSFHSIPTW-VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +Y +TS +SF I L + K P + LV NK D+ +RV++ E LA+
Sbjct: 80 ILVYSVTSIKSFEVIKVIHGKLLDMVGKVQIP--IMLVGNKKDLHMERVISYEEGKALAE 137
Query: 92 SLHLHSFAVSAR 103
S + SA+
Sbjct: 138 SWNAAFLESSAK 149
>pdb|4DJT|A Chain A, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
pdb|4DJT|B Chain B, Crystal Structure Of A Nuclear Gtp-Binding Protein From
Encephalitozoon Cuniculi Bound To Gdp-Mg2+
Length = 218
Score = 32.3 bits (72), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I +D+TS + ++ WV F + P + + ANK D+++++ ++ + ++ +
Sbjct: 89 ILFFDVTSRITCQNLARWVKEFQAVVGNEAP--IVVCANKIDIKNRQKISKKLVMEVLKG 146
Query: 93 LHLHSFAVSARTGDN 107
+ F +SA+T N
Sbjct: 147 KNYEYFEISAKTAHN 161
>pdb|3OES|A Chain A, Crystal Structure Of The Small Gtpase Rhebl1
Length = 201
Score = 31.6 bits (70), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +Y +TS SF I + H K+ P V LV NK D+ +R V KLA+
Sbjct: 100 VLVYSVTSLHSFQVIESLYQKLHEGHGKTRVP--VVLVGNKADLSPEREVQAVEGKKLAE 157
Query: 92 SLHLHSFAVSAR 103
S SAR
Sbjct: 158 SWGATFMESSAR 169
>pdb|2F9L|A Chain A, 3d Structure Of Inactive Human Rab11b Gtpase
pdb|2F9M|A Chain A, 3d Structure Of Active Human Rab11b Gtpase
Length = 199
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDI ++ ++ W L L + + + LV NK D+ H R V + A+
Sbjct: 82 LLVYDIAKHLTYENVERW--LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 139
Query: 93 LHLHSFAVSARTGDNC 108
+L SA N
Sbjct: 140 NNLSFIETSALDSTNV 155
>pdb|2BOV|A Chain A, Molecular Recognition Of An Adp-Ribosylating Clostridium
Botulinum C3 Exoenzyme By Rala Gtpase
Length = 206
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 40/80 (50%), Gaps = 3/80 (3%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + ++ IT +SF + + + + + + P LV NK D+E +R V++E
Sbjct: 86 GEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLVGNKSDLEDKRQVSVEEAK 143
Query: 88 KLAQSLHLHSFAVSARTGDN 107
A+ +++ SA+T N
Sbjct: 144 NRAEQWNVNYVETSAKTRAN 163
>pdb|4FMC|F Chain F, Espg-Rab1 Complex
Length = 117
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 2/44 (4%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75
+I +YD+T +SF+++ W L ++R +S LV NK D+
Sbjct: 74 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDL 115
>pdb|3BRW|D Chain D, Structure Of The Rap-Rapgap Complex
pdb|3CF6|R Chain R, Structure Of Epac2 In Complex With Cyclic-Amp And Rap
Length = 167
Score = 31.2 bits (69), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
G+ +Y IT+ +F+ + + L K + + LV NK D+E +RVV E+
Sbjct: 75 GQGFALVYSITAQSTFNDLQDLREQI-LRVKDTDDVPMILVGNKCDLEDERVVGKEQGQN 133
Query: 89 LAQSLHLHSFAVSA 102
LA+ + +F S+
Sbjct: 134 LARQWNNCAFLESS 147
>pdb|4DXA|A Chain A, Co-Crystal Structure Of Rap1 In Complex With Krit1
Length = 169
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
G+ +Y IT+ +F+ + + L K + + LV NK D+E +RVV E+
Sbjct: 77 GQGFALVYSITAQSTFNDLQDLREQI-LRVKDTDDVPMILVGNKCDLEDERVVGKEQGQN 135
Query: 89 LAQSLHLHSFAVSA 102
LA+ + +F S+
Sbjct: 136 LARQWNNCAFLESS 149
>pdb|1ZC3|A Chain A, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC3|C Chain C, Crystal Structure Of The Ral-Binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|A Chain A, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
pdb|1ZC4|C Chain C, Crystal Structure Of The Ral-binding Domain Of Exo84 In
Complex With The Active Rala
Length = 175
Score = 31.2 bits (69), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
G+ + ++ IT +SF + + + + + + P LV NK D+E +R V++E
Sbjct: 77 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLVGNKSDLEDKRQVSVEEA 134
Query: 87 AKLAQSLHLHSFAVSARTGDNC 108
A+ +++ SA+T N
Sbjct: 135 KNRAEQWNVNYVETSAKTRANV 156
>pdb|2A78|A Chain A, Crystal Structure Of The C3bot-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
pdb|2A9K|A Chain A, Crystal Structure Of The C3bot-Nad-Rala Complex Reveals A
Novel Type Of Action Of A Bacterial Exoenzyme
Length = 187
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
G+ + ++ IT +SF + + + + + + P LV NK D+E +R V++E
Sbjct: 89 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLVGNKSDLEDKRQVSVEEA 146
Query: 87 AKLAQSLHLHSFAVSARTGDNC 108
A+ +++ SA+T N
Sbjct: 147 KNRAEQWNVNYVETSAKTRANV 168
>pdb|1UAD|A Chain A, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
pdb|1UAD|B Chain B, Crystal Structure Of The Rala-gppnhp-sec5 Ral-binding
Domain Complex
Length = 175
Score = 31.2 bits (69), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 40/82 (48%), Gaps = 3/82 (3%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
G+ + ++ IT +SF + + + + + + P LV NK D+E +R V++E
Sbjct: 77 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLVGNKSDLEDKRQVSVEEA 134
Query: 87 AKLAQSLHLHSFAVSARTGDNC 108
A+ +++ SA+T N
Sbjct: 135 KNRAEQWNVNYVETSAKTRANV 156
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 30.8 bits (68), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFH---LNRKSSTPTYVALVANKGDMEHQRVVTLE 84
G + +Y +T SF VD FH L K + LVANK D+ H R VT +
Sbjct: 89 TGDGFLIVYSVTDKASFEH----VDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144
Query: 85 RHAKLAQSLHLHSFAVSAR 103
+ ++A ++ SA+
Sbjct: 145 QGKEMATKYNIPYIETSAK 163
>pdb|3KKO|A Chain A, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|B Chain B, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
pdb|3KKO|P Chain P, Crystal Structure Of M-Ras P40dD41EL51R IN COMPLEX WITH GP
Length = 183
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFH---LNRKSSTPTYVALVANKGDMEHQRVVTLE 84
G + +Y +T SF VD FH L K + LVANK D+ H R VT +
Sbjct: 89 TGDGFLIVYSVTDKASFEH----VDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144
Query: 85 RHAKLAQSLHLHSFAVSAR 103
+ ++A ++ SA+
Sbjct: 145 QGKEMATKYNIPYIETSAK 163
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 30.8 bits (68), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFH---LNRKSSTPTYVALVANKGDMEHQRVVTLE 84
G + +Y +T SF VD FH L K + LVANK D+ H R VT +
Sbjct: 89 TGDGFLIVYSVTDKASFEH----VDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 144
Query: 85 RHAKLAQSLHLHSFAVSAR 103
+ ++A ++ SA+
Sbjct: 145 QGKEMATKYNIPYIETSAK 163
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 30.8 bits (68), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 36/79 (45%), Gaps = 7/79 (8%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFH---LNRKSSTPTYVALVANKGDMEHQRVVTLE 84
G + +Y +T SF VD FH L K + LVANK D+ H R VT +
Sbjct: 84 TGDGFLIVYSVTDKASFEH----VDRFHQLILRVKDRESFPMILVANKVDLMHLRKVTRD 139
Query: 85 RHAKLAQSLHLHSFAVSAR 103
+ ++A ++ SA+
Sbjct: 140 QGKEMATKYNIPYIETSAK 158
>pdb|1GUA|A Chain A, Human Rap1a, Residues 1-167, Double Mutant (E30d,K31e)
Complexed With Gppnhp And The Ras-Binding-Domain Of
Human C-Raf1, Residues 51-131
pdb|3KUC|A Chain A, Complex Of Rap1a(E30dK31E)GDP WITH RAFRBD(A85KN71R)
Length = 167
Score = 30.8 bits (68), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
G+ +Y IT+ +F+ + + L K + + LV NK D+E +RVV E+
Sbjct: 75 GQGFALVYSITAQSTFNDLQDLREQI-LRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 133
Query: 89 LAQSLHLHSFAVSA 102
LA+ +F S+
Sbjct: 134 LARQWCNCAFLESS 147
>pdb|1C1Y|A Chain A, Crystal Structure Of Rap.Gmppnp In Complex With The Ras-
Binding-Domain Of C-Raf1 Kinase (Rafrbd)
Length = 167
Score = 30.4 bits (67), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
G+ +Y IT+ +F+ + + L K + + LV NK D+E +RVV E+
Sbjct: 75 GQGFALVYSITAQSTFNDLQDLREQI-LRVKDTEDVPMILVGNKCDLEDERVVGKEQGQN 133
Query: 89 LAQSLHLHSFAVSA 102
LA+ +F S+
Sbjct: 134 LARQWCNCAFLESS 147
>pdb|2GZD|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZD|B Chain B, Crystal Structure Of Rab11 In Complex With Rab11-Fip2
pdb|2GZH|A Chain A, Crystal Structure Of Rab11 In Complex With Rab11-Family
Interacting Protein 2
Length = 173
Score = 30.4 bits (67), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI ++ ++ W L L + + + LV NK D+ H R V + A+
Sbjct: 87 ALLVYDIAKHLTYENVERW--LKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAE 144
Query: 92 SLHLHSFAVSA 102
L SA
Sbjct: 145 KNGLSFIETSA 155
>pdb|2D7C|A Chain A, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
pdb|2D7C|B Chain B, Crystal Structure Of Human Rab11 In Complex With Fip3 Rab-
Binding Domain
Length = 167
Score = 30.4 bits (67), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDI ++ ++ W L L + + + LV NK D+ H R V + A+
Sbjct: 82 LLVYDIAKHLTYENVERW--LKELRDHADSNIVIXLVGNKSDLRHLRAVPTDEARAFAEK 139
Query: 93 LHLHSFAVSARTGDNC 108
L SA N
Sbjct: 140 NGLSFIETSALDSTNV 155
>pdb|1OIW|A Chain A, X-ray Structure Of The Small G Protein Rab11a In Complex
With Gtpgammas
pdb|1OIX|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp And Pi
Length = 191
Score = 30.4 bits (67), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI ++ ++ W L L + + + LV NK D+ H R V + A+
Sbjct: 105 ALLVYDIAKHLTYENVERW--LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 162
Query: 92 SLHLHSFAVSA 102
L SA
Sbjct: 163 KNGLSFIETSA 173
>pdb|1OIV|A Chain A, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
pdb|1OIV|B Chain B, X-Ray Structure Of The Small G Protein Rab11a In Complex
With Gdp
Length = 191
Score = 30.4 bits (67), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI ++ ++ W L L + + + LV NK D+ H R V + A+
Sbjct: 105 ALLVYDIAKHLTYENVERW--LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 162
Query: 92 SLHLHSFAVSA 102
L SA
Sbjct: 163 KNGLSFIETSA 173
>pdb|1U8Y|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Y|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U8Z|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|A Chain A, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
pdb|1U90|B Chain B, Crystal Structures Of Ral-Gppnhp And Ral-Gdp Reveal Two
Novel Binding Sites That Are Also Present In Ras And Rap
Length = 168
Score = 30.0 bits (66), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 39/82 (47%), Gaps = 3/82 (3%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH 86
G+ + ++ IT +SF + + + + + + P LV NK D+E +R V++E
Sbjct: 75 SGEGFLCVFSITEMESFAATADFREQILRVKEDENVP--FLLVGNKSDLEDKRQVSVEEA 132
Query: 87 AKLAQSLHLHSFAVSARTGDNC 108
A +++ SA+T N
Sbjct: 133 KNRADQWNVNYVETSAKTRANV 154
>pdb|2HV8|A Chain A, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|B Chain B, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
pdb|2HV8|C Chain C, Crystal Structure Of Gtp-Bound Rab11 In Complex With Fip3
Length = 172
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDI ++ ++ W L L + + + LV NK D+ H R V + A+
Sbjct: 85 LLVYDIAKHLTYENVERW--LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 142
Query: 93 LHLHSFAVSA 102
L SA
Sbjct: 143 NGLSFIETSA 152
>pdb|1YZK|A Chain A, Gppnhp Bound Rab11 Gtpase
Length = 184
Score = 30.0 bits (66), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 30/70 (42%), Gaps = 2/70 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +YDI ++ ++ W L L + + + LV NK D+ H R V + A+
Sbjct: 97 LLVYDIAKHLTYENVERW--LKELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAEK 154
Query: 93 LHLHSFAVSA 102
L SA
Sbjct: 155 NGLSFIETSA 164
>pdb|2KE5|A Chain A, Solution Structure And Dynamics Of The Small Gtpase Ralb
In Its Active Conformation: Significance For Effector
Protein Binding
Length = 174
Score = 29.3 bits (64), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + ++ IT +SF + + + + + +V NK D+E +R V +E
Sbjct: 74 SGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEAR 133
Query: 88 KLAQSLHLHSFAVSARTGDNC 108
A+ + SA+T N
Sbjct: 134 SKAEEWGVQYVETSAKTRANV 154
>pdb|2KWI|A Chain A, Ralb-Rlip76 (Ralbp1) Complex
Length = 178
Score = 29.3 bits (64), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/81 (22%), Positives = 35/81 (43%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + ++ IT +SF + + + + + +V NK D+E +R V +E
Sbjct: 78 SGEGFLLVFSITEHESFTATAEFREQILRVKAEEDKIPLLVVGNKSDLEERRQVPVEEAR 137
Query: 88 KLAQSLHLHSFAVSARTGDNC 108
A+ + SA+T N
Sbjct: 138 SKAEEWGVQYVETSAKTRANV 158
>pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
pdb|1Z47|B Chain B, Structure Of The Atpase Subunit Cysa Of The Putative
Sulfate Atp-Binding Cassette (Abc) Transporter From
Alicyclobacillus Acidocaldarius
Length = 355
Score = 28.1 bits (61), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 61 STPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEI 117
S + VA+V D+E Q E HA++ +S S++ CW+ T+ E+
Sbjct: 275 SEGSEVAVVVRPKDVELQPASEREAHAQVVRSAFKGSYSA-------CWIRTKDGEV 324
>pdb|3ICQ|B Chain B, Karyopherin Nuclear State
pdb|3ICQ|C Chain C, Karyopherin Nuclear State
Length = 171
Score = 27.3 bits (59), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 40/80 (50%), Gaps = 7/80 (8%)
Query: 29 GKIVIFMYDITSGQSFHSIPTW-VDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
+ I M+D+TS ++ ++P W DL + + P + L NK D++ ++V +
Sbjct: 77 AQCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIP--IVLCGNKVDVKERKVKA--KTI 130
Query: 88 KLAQSLHLHSFAVSARTGDN 107
+ +L + +SA++ N
Sbjct: 131 TFHRKKNLQYYDISAKSNYN 150
>pdb|2X19|A Chain A, Crystal Structure Of Importin13 - Rangtp Complex
Length = 172
Score = 27.3 bits (59), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 11/81 (13%)
Query: 30 KIVIFMYDITSGQSFHSIPTW-VDLFHLNRKSSTPTYVALVANKGDMEHQRV--VTLERH 86
+ I M+D+TS ++ ++P W DL + + P + L NK D++ ++V T+ H
Sbjct: 79 QCAIIMFDVTSRITYKNVPNWHRDLVRVC--ENIP--IVLCGNKVDVKERKVKAKTITFH 134
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
K +L + +SA++ N
Sbjct: 135 RK----KNLQYYDISAKSNYN 151
>pdb|1NRJ|A Chain A, Signal Recognition Particle Receptor Beta-Subunit In
Complex With The Srx Domain From The Alpha-Subunit
Length = 158
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 26/60 (43%)
Query: 48 PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
P++ LF+LN++ V ++ + TL KL SLHL + R G N
Sbjct: 71 PSFNALFYLNKQPELYFVVTFAEQTLELNQETQQTLALVLKLWNSLHLSESILKNRQGQN 130
>pdb|3M1I|A Chain A, Crystal Structure Of Yeast Crm1 (Xpo1p) In Complex With
Yeas (Yrb1p) And Yeast Rangtp (Gsp1pgtp)
Length = 219
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 11/82 (13%)
Query: 29 GKIVIFMYDITSGQSFHSIPTW-VDLFHLNRKSSTPTYVALVANKGDMEHQRV--VTLER 85
+ I M+D+TS ++ ++P W DL + + L NK D++ ++V T+
Sbjct: 85 AQCAIIMFDVTSRITYKNVPNWHRDLVRVCENIP----IVLCGNKVDVKERKVKAKTITF 140
Query: 86 HAKLAQSLHLHSFAVSARTGDN 107
H K +L + +SA++ N
Sbjct: 141 HRK----KNLQYYDISAKSNYN 158
>pdb|3OF6|D Chain D, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|E Chain E, Human Pre-T Cell Receptor Crystal Structure
pdb|3OF6|F Chain F, Human Pre-T Cell Receptor Crystal Structure
Length = 130
Score = 27.3 bits (59), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 23/72 (31%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 39 TSGQSFHSIPTWVDLFHLNRKSST-PTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHS 97
T G S + TW +L HL+ S ++ LV + G E H++ Q +HL
Sbjct: 63 TYGPSPATDGTWTNLAHLSLPSEELASWEPLVCHTGP-------GAEGHSRSTQPMHLSG 115
Query: 98 FAVSART--GDN 107
A +ART GD+
Sbjct: 116 EASTARTCSGDD 127
>pdb|3SBD|A Chain A, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBD|B Chain B, Crystal Structure Of Rac1 P29s Mutant
pdb|3SBE|A Chain A, Crystal Structure Of Rac1 P29s Mutant
Length = 187
Score = 26.6 bits (57), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 21/78 (26%), Positives = 34/78 (43%), Gaps = 4/78 (5%)
Query: 10 HNDNYEIQ---LKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTY 65
H +N Q +K V++GD + GK + + T+ S IPT D + N P
Sbjct: 3 HMENLYFQGQAIKCVVVGDGAVGKTCLLISYTTNAFSGEYIPTVFDNYSANVMVDGKPVN 62
Query: 66 VALVANKGDMEHQRVVTL 83
+ L G ++ R+ L
Sbjct: 63 LGLWDTAGQEDYDRLRPL 80
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,630,006
Number of Sequences: 62578
Number of extensions: 171020
Number of successful extensions: 623
Number of sequences better than 100.0: 127
Number of HSP's better than 100.0 without gapping: 57
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 496
Number of HSP's gapped (non-prelim): 149
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 47 (22.7 bits)