BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2600
(158 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3SWY9|RAB28_BOVIN Ras-related protein Rab-28 OS=Bos taurus GN=RAB28 PE=2 SV=1
Length = 221
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YD+T+ QSF ++ W + ++ +S T VALV NK D+EH R V E+H +
Sbjct: 89 VLLVYDVTNYQSFENLEDWYSVVKKVSEESETQPLVALVGNKIDLEHMRTVKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>sp|P51157|RAB28_HUMAN Ras-related protein Rab-28 OS=Homo sapiens GN=RAB28 PE=1 SV=2
Length = 221
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>sp|Q99KL7|RAB28_MOUSE Ras-related protein Rab-28 OS=Mus musculus GN=Rab28 PE=2 SV=1
Length = 221
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKADKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>sp|Q5RFI2|RAB28_PONAB Ras-related protein Rab-28 OS=Pongo abelii GN=RAB28 PE=2 SV=1
Length = 221
Score = 60.5 bits (145), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 31/80 (38%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 89 VLLVYDITNYQSFENLEDWYTVVKKVSEESETRPLVALVGNKIDLEHMRTIKPEKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>sp|P51158|RAB28_RAT Ras-related protein Rab-28 OS=Rattus norvegicus GN=Rab28 PE=2 SV=1
Length = 221
Score = 59.7 bits (143), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 48/80 (60%), Gaps = 1/80 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R V ++H +
Sbjct: 89 ILLVYDITNYQSFENLEDWYSVVKTVSEESETQPLVALVGNKIDLEHMRTVKPDKHLRFC 148
Query: 91 QSLHLHSFAVSARTGDNCWV 110
Q S VSA+TGD+ ++
Sbjct: 149 QENGFSSHFVSAKTGDSVFL 168
>sp|P25228|RAB3_DROME Ras-related protein Rab-3 OS=Drosophila melanogaster GN=Rab3 PE=1
SV=1
Length = 220
Score = 57.4 bits (137), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYD+T+ SF+S+ WV + S V LV NK DME QRV++ ER +LA
Sbjct: 98 ILMYDVTNEDSFNSVQDWVT--QIKTYSWDNAQVILVGNKCDMEDQRVISFERGRQLADQ 155
Query: 93 LHLHSFAVSAR 103
L + F SA+
Sbjct: 156 LGVEFFETSAK 166
>sp|Q94986|RAB3_CAEEL Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2
SV=1
Length = 219
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+S+ W + S V LV NK DM+ +RVV+++R +LA
Sbjct: 99 ILMYDITNEESFNSVQDWCT--QIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQ 156
Query: 93 LHLHSFAVSAR 103
L L F SA+
Sbjct: 157 LGLEFFETSAK 167
>sp|Q4R4R9|RAB3A_MACFA Ras-related protein Rab-3A OS=Macaca fascicularis GN=RAB3A PE=2
SV=1
Length = 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>sp|P20336|RAB3A_HUMAN Ras-related protein Rab-3A OS=Homo sapiens GN=RAB3A PE=1 SV=1
Length = 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>sp|P11023|RAB3A_BOVIN Ras-related protein Rab-3A OS=Bos taurus GN=RAB3A PE=1 SV=3
Length = 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>sp|P63012|RAB3A_RAT Ras-related protein Rab-3A OS=Rattus norvegicus GN=Rab3a PE=1 SV=1
Length = 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>sp|Q06AU3|RAB3A_PIG Ras-related protein Rab-3A OS=Sus scrofa GN=RAB3A PE=2 SV=1
Length = 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>sp|P63011|RAB3A_MOUSE Ras-related protein Rab-3A OS=Mus musculus GN=Rab3a PE=1 SV=1
Length = 220
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 99 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLADH 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFEFFEASAK 167
>sp|P62824|RAB3C_RAT Ras-related protein Rab-3C OS=Rattus norvegicus GN=Rab3c PE=1 SV=1
Length = 227
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V L NK DME +RVV+ ER +L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>sp|P62823|RAB3C_MOUSE Ras-related protein Rab-3C OS=Mus musculus GN=Rab3c PE=1 SV=1
Length = 227
Score = 51.6 bits (122), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V L NK DME +RVV+ ER +L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILAGNKCDMEDERVVSTERGQRLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>sp|P10949|RAB3C_BOVIN Ras-related protein Rab-3C OS=Bos taurus GN=RAB3C PE=2 SV=3
Length = 227
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>sp|P20337|RAB3B_HUMAN Ras-related protein Rab-3B OS=Homo sapiens GN=RAB3B PE=1 SV=2
Length = 219
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>sp|Q55ET3|RABQ_DICDI Ras-related protein RabQ OS=Dictyostelium discoideum GN=rabQ PE=3
SV=1
Length = 204
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 2/73 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I + YDIT QSF + W+D + + SS +AL+ NK D + +RV+T E AK A
Sbjct: 80 IALLCYDITKRQSFQYLSGWMD--EVRQMSSPNIVIALIGNKCDCKDKRVITTEEGAKNA 137
Query: 91 QSLHLHSFAVSAR 103
+ + F SA+
Sbjct: 138 KENDILFFETSAK 150
>sp|Q96E17|RAB3C_HUMAN Ras-related protein Rab-3C OS=Homo sapiens GN=RAB3C PE=2 SV=1
Length = 227
Score = 50.8 bits (120), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV++ ER L +
Sbjct: 107 ILMYDITNEESFNAVQDWST--QIKTYSWDNAQVILVGNKCDMEDERVISTERGQHLGEQ 164
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 165 LGFEFFETSAK 175
>sp|P10948|RAB3B_BOVIN Ras-related protein Rab-3B OS=Bos taurus GN=RAB3B PE=2 SV=1
Length = 219
Score = 50.8 bits (120), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>sp|P34143|RABC_DICDI Ras-related protein RabC OS=Dictyostelium discoideum GN=rabC PE=2
SV=2
Length = 196
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 39/72 (54%), Gaps = 2/72 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YD+T +SF WV+ +N+ + + LV NK DM QR VT E+ ++A+
Sbjct: 84 VIVVYDVTDPKSFERCKNWVE--DINQYTQDGMIIILVGNKSDMVAQRKVTFEQGQEMAE 141
Query: 92 SLHLHSFAVSAR 103
L VSA+
Sbjct: 142 QLKTKFLEVSAK 153
>sp|P17609|YPT2_SCHPO GTP-binding protein ypt2 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=ypt2 PE=3 SV=1
Length = 200
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/76 (32%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T +SF ++ TW ++ + +S Y L+ NK D E QR V+ E+ LA
Sbjct: 85 ILLLYDVTDKKSFDNVRTWFS--NVEQHASENVYKILIGNKCDCEDQRQVSFEQGQALAD 142
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+T N
Sbjct: 143 ELGVKFLEASAKTNVN 158
>sp|Q5KTJ7|RAB3B_MESAU Ras-related protein Rab-3B OS=Mesocricetus auratus GN=RAB3B PE=2
SV=1
Length = 219
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>sp|Q9CZT8|RAB3B_MOUSE Ras-related protein Rab-3B OS=Mus musculus GN=Rab3b PE=1 SV=1
Length = 219
Score = 50.4 bits (119), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVVPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>sp|Q7Z6P3|RAB44_HUMAN Ras-related protein Rab-44 OS=Homo sapiens GN=RAB44 PE=3 SV=3
Length = 723
Score = 50.4 bits (119), Expect = 5e-06, Method: Composition-based stats.
Identities = 29/76 (38%), Positives = 41/76 (53%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
V+ MYDITS +SF + W+D L S + L+ NK D E +R V++E +LAQ
Sbjct: 612 VVLMYDITSQESFAHVRYWLDC--LQDAGSDGVVILLLGNKMDCEEERQVSVEAGQQLAQ 669
Query: 92 SLHLHSFAVSARTGDN 107
L ++ SA G N
Sbjct: 670 ELGVYFGECSAALGHN 685
>sp|Q63941|RAB3B_RAT Ras-related protein Rab-3B OS=Rattus norvegicus GN=Rab3b PE=1 SV=2
Length = 219
Score = 50.1 bits (118), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 38/71 (53%), Gaps = 2/71 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I MYDIT+ +SF+++ W + S V LV NK DME +RV+ E+ LA+
Sbjct: 99 ILMYDITNEESFNAVQDWAT--QIKTYSWDNAQVILVGNKCDMEEERVIPTEKGRLLAEQ 156
Query: 93 LHLHSFAVSAR 103
L F SA+
Sbjct: 157 LGFDFFEASAK 167
>sp|Q99P58|RB27B_MOUSE Ras-related protein Rab-27B OS=Mus musculus GN=Rab27b PE=1 SV=3
Length = 218
Score = 49.7 bits (117), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>sp|Q22782|RAB6B_CAEEL Ras-related protein Rab-6.2 OS=Caenorhabditis elegans GN=rab-6.2
PE=2 SV=1
Length = 205
Score = 49.7 bits (117), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH W+D R S + LV NK D+ +R VT + + A
Sbjct: 85 VAVVVYDITNSNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVTTDEGERKA 142
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 143 KELNVMFIETSAKAGYN 159
>sp|Q8HZJ5|RB27B_BOVIN Ras-related protein Rab-27B OS=Bos taurus GN=RAB27B PE=2 SV=3
Length = 218
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARDLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YSIPYFETSAATGQN 169
>sp|O00194|RB27B_HUMAN Ras-related protein Rab-27B OS=Homo sapiens GN=RAB27B PE=1 SV=4
Length = 218
Score = 49.3 bits (116), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELADK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>sp|Q923S9|RAB30_MOUSE Ras-related protein Rab-30 OS=Mus musculus GN=Rab30 PE=2 SV=1
Length = 203
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>sp|Q15771|RAB30_HUMAN Ras-related protein Rab-30 OS=Homo sapiens GN=RAB30 PE=1 SV=2
Length = 203
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>sp|Q17QB7|RAB30_BOVIN Ras-related protein Rab-30 OS=Bos taurus GN=RAB30 PE=2 SV=1
Length = 203
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W L + + +S LV NK D+ +R V+ +R + ++
Sbjct: 85 LILTYDITCEESFRCLPEW--LREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 142
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 143 AQDMYYLETSAKESDN 158
>sp|Q99P74|RB27B_RAT Ras-related protein Rab-27B OS=Rattus norvegicus GN=Rab27b PE=2
SV=3
Length = 218
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA+
Sbjct: 96 LLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLLDQREVNERQARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 155 YGIPYFETSAATGQN 169
>sp|P61294|RAB6B_MOUSE Ras-related protein Rab-6B OS=Mus musculus GN=Rab6b PE=1 SV=1
Length = 208
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>sp|Q9NRW1|RAB6B_HUMAN Ras-related protein Rab-6B OS=Homo sapiens GN=RAB6B PE=1 SV=1
Length = 208
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>sp|A6QR46|RAB6B_BOVIN Ras-related protein Rab-6B OS=Bos taurus GN=RAB6B PE=2 SV=1
Length = 208
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SF W+D R S + LV NK D+ +R +T+E + A
Sbjct: 88 VAVVVYDITNLNSFQQTSKWIDDVRTERGSDV--IIMLVGNKTDLADKRQITIEEGEQRA 145
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+TG N
Sbjct: 146 KELSVMFIETSAKTGYN 162
>sp|P34213|RAB6A_CAEEL Ras-related protein Rab-6.1 OS=Caenorhabditis elegans GN=rab-6.1
PE=2 SV=1
Length = 205
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDIT+ SFH WVD + + + LV NK D+ +R V+ E K A
Sbjct: 86 VAVVVYDITNANSFHQTTKWVD--DVRNERGCDVIIVLVGNKTDLADKRQVSTEDGEKKA 143
Query: 91 QSLHLHSFAVSARTGDN 107
+ L++ SA+ G N
Sbjct: 144 RDLNVMFIETSAKAGYN 160
>sp|Q9CB01|RABF1_ARATH Ras-related protein RABF1 OS=Arabidopsis thaliana GN=RABF1 PE=1
SV=1
Length = 202
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/77 (35%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + +YDITS +SF WV L + S +ALV NK D+ +R V E +LA
Sbjct: 109 VAVIVYDITSPESFKKAQYWVK--ELQKHGSPDIVMALVGNKADLHEKREVPTEDGMELA 166
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T DN
Sbjct: 167 EKNGMFFIETSAKTADN 183
>sp|P35281|RAB10_RAT Ras-related protein Rab-10 OS=Rattus norvegicus GN=Rab10 PE=1 SV=1
Length = 200
Score = 48.5 bits (114), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 45/76 (59%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+G+SF +I W L ++++ ++ L+ NK DM+H+RVV + ++A+
Sbjct: 85 IMLVYDITNGKSFENISKW--LRNIDQHANEDVERMLLRNKCDMDHKRVVPKGKGEQIAR 142
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA+ N
Sbjct: 143 EHRIRFFETSAKANIN 158
>sp|Q4LE85|RB27A_PIG Ras-related protein Rab-27A OS=Sus scrofa GN=RAB27A PE=2 SV=1
Length = 221
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>sp|P51159|RB27A_HUMAN Ras-related protein Rab-27A OS=Homo sapiens GN=RAB27A PE=1 SV=3
Length = 221
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEEAIALAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>sp|Q9DD03|RAB13_MOUSE Ras-related protein Rab-13 OS=Mus musculus GN=Rab13 PE=1 SV=1
Length = 202
Score = 48.1 bits (113), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRQVQREQAEKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHRIRFFETSAKSSVN 157
>sp|P36017|VPS21_YEAST Vacuolar protein sorting-associated protein 21 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=VPS21 PE=1
SV=1
Length = 210
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 5/82 (6%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ---RVVTLER 85
+ + +YD+T QSF WV H ++S +ALV NK DM + R V E
Sbjct: 80 AQAALVVYDVTKPQSFIKARHWVKELH--EQASKDIIIALVGNKIDMLQEGGERKVAREE 137
Query: 86 HAKLAQSLHLHSFAVSARTGDN 107
KLA+ L F SA+TG+N
Sbjct: 138 GEKLAEEKGLLFFETSAKTGEN 159
>sp|Q58DS5|RAB13_BOVIN Ras-related protein Rab-13 OS=Bos taurus GN=RAB13 PE=2 SV=1
Length = 203
Score = 47.8 bits (112), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>sp|Q1HE58|RB27A_CANFA Ras-related protein Rab-27A OS=Canis familiaris GN=RAB27A PE=2 SV=1
Length = 221
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QRVV E LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRVVKEEDARGLAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>sp|P23640|RB27A_RAT Ras-related protein Rab-27A OS=Rattus norvegicus GN=Rab27a PE=1
SV=1
Length = 221
Score = 47.4 bits (111), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
>sp|P51153|RAB13_HUMAN Ras-related protein Rab-13 OS=Homo sapiens GN=RAB13 PE=1 SV=1
Length = 203
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT +SF +I W+ N +S L+ NK DME +R V E+ KLA+
Sbjct: 84 IILVYDITDEKSFENIQNWMKSIKEN--ASAGVERLLLGNKCDMEAKRKVQKEQADKLAR 141
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA++ N
Sbjct: 142 EHGIRFFETSAKSSMN 157
>sp|P08647|RAS_SCHPO Ras-like protein 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC
24843) GN=ras1 PE=3 SV=2
Length = 219
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 43/76 (56%), Gaps = 3/76 (3%)
Query: 29 GKIVIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + +Y+ITS SF I T + + + K + P V LVANK D+E +RVV+
Sbjct: 80 GEGFLLVYNITSRSSFDEISTFYQQILRVKDKDTFP--VVLVANKCDLEAERVVSRAEGE 137
Query: 88 KLAQSLHLHSFAVSAR 103
+LA+S+H SA+
Sbjct: 138 QLAKSMHCLYVETSAK 153
>sp|Q9ERI2|RB27A_MOUSE Ras-related protein Rab-27A OS=Mus musculus GN=Rab27a PE=1 SV=1
Length = 221
Score = 47.4 bits (111), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 38/75 (50%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++D+T+ QSF ++ W+ ++ P V L NK D+E QR V E +LA+
Sbjct: 96 LLLFDLTNEQSFLNVRNWISQLQMHAYCENPDIV-LCGNKSDLEDQRAVKEEEARELAEK 154
Query: 93 LHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 155 YGIPYFETSAANGTN 169
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.320 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,471,568
Number of Sequences: 539616
Number of extensions: 2109369
Number of successful extensions: 5396
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 367
Number of HSP's that attempted gapping in prelim test: 5020
Number of HSP's gapped (non-prelim): 575
length of query: 158
length of database: 191,569,459
effective HSP length: 108
effective length of query: 50
effective length of database: 133,290,931
effective search space: 6664546550
effective search space used: 6664546550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)