Query psy2600
Match_columns 158
No_of_seqs 122 out of 1029
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 20:20:45 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2600.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2600hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0078|consensus 99.9 2.1E-26 4.6E-31 164.5 13.5 113 9-123 4-177 (207)
2 KOG0084|consensus 99.9 2.9E-26 6.2E-31 162.0 13.6 113 11-125 3-177 (205)
3 KOG0093|consensus 99.9 1.1E-25 2.4E-30 152.4 10.8 117 9-127 13-190 (193)
4 KOG0098|consensus 99.9 2.2E-25 4.9E-30 156.2 11.5 114 13-128 2-176 (216)
5 KOG0087|consensus 99.9 1.2E-24 2.7E-29 155.2 12.5 112 11-124 8-180 (222)
6 KOG0088|consensus 99.9 2.1E-24 4.6E-29 148.0 13.1 115 7-123 3-178 (218)
7 KOG0092|consensus 99.9 2.3E-24 5E-29 151.8 12.0 92 32-125 81-172 (200)
8 KOG0091|consensus 99.9 1.6E-23 3.5E-28 144.2 14.6 114 12-125 3-178 (213)
9 cd04121 Rab40 Rab40 subfamily. 99.9 1.1E-23 2.3E-28 152.1 14.0 90 32-124 82-171 (189)
10 KOG0086|consensus 99.9 1.7E-23 3.6E-28 142.8 11.5 130 11-142 3-193 (214)
11 KOG0081|consensus 99.9 5.2E-24 1.1E-28 146.1 8.2 94 32-128 94-189 (219)
12 cd04120 Rab12 Rab12 subfamily. 99.9 5.3E-22 1.2E-26 144.7 14.8 92 29-122 73-165 (202)
13 KOG0094|consensus 99.9 3E-22 6.4E-27 141.6 11.3 90 32-123 98-188 (221)
14 KOG0097|consensus 99.9 1.1E-21 2.5E-26 132.4 13.2 147 9-157 3-210 (215)
15 KOG0079|consensus 99.9 9.6E-23 2.1E-27 138.3 6.6 89 32-123 84-172 (198)
16 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.9 1.3E-21 2.8E-26 140.5 12.3 85 32-119 80-179 (182)
17 cd04133 Rop_like Rop subfamily 99.9 1.2E-21 2.6E-26 140.0 11.8 86 32-120 76-173 (176)
18 KOG0394|consensus 99.9 2.1E-21 4.5E-26 136.1 12.4 112 12-123 4-181 (210)
19 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.9 4.2E-21 9.2E-26 142.5 14.5 88 32-122 88-190 (232)
20 KOG0080|consensus 99.9 7.4E-22 1.6E-26 135.7 9.4 111 11-122 5-176 (209)
21 cd04111 Rab39 Rab39 subfamily. 99.9 1.2E-20 2.6E-25 138.4 15.7 117 32-150 79-200 (211)
22 cd04122 Rab14 Rab14 subfamily. 99.9 5.7E-21 1.2E-25 134.6 13.4 88 32-121 78-165 (166)
23 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.9 5.2E-21 1.1E-25 136.0 12.8 89 32-122 77-166 (172)
24 cd01867 Rab8_Rab10_Rab13_like 99.9 9.3E-21 2E-25 133.7 13.4 88 32-121 79-166 (167)
25 cd04131 Rnd Rnd subfamily. Th 99.9 4.4E-21 9.5E-26 137.3 11.7 86 32-120 76-176 (178)
26 PLN03110 Rab GTPase; Provision 99.9 2.2E-20 4.8E-25 137.4 14.5 113 9-123 4-177 (216)
27 cd04117 Rab15 Rab15 subfamily. 99.9 1.7E-20 3.6E-25 131.9 12.5 87 30-118 74-160 (161)
28 cd04126 Rab20 Rab20 subfamily. 99.8 2.7E-20 5.9E-25 137.3 13.6 91 32-124 71-194 (220)
29 cd04127 Rab27A Rab27a subfamil 99.8 3.4E-20 7.3E-25 132.1 13.4 88 32-121 90-178 (180)
30 PLN03108 Rab family protein; P 99.8 6.2E-20 1.3E-24 134.5 15.1 91 32-124 82-172 (210)
31 cd01866 Rab2 Rab2 subfamily. 99.8 4.6E-20 1E-24 130.3 13.7 88 32-121 80-167 (168)
32 cd01875 RhoG RhoG subfamily. 99.8 2.5E-20 5.3E-25 134.7 12.5 88 32-122 78-179 (191)
33 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.8 4.5E-20 9.7E-25 129.9 13.2 88 32-121 78-165 (166)
34 PF00071 Ras: Ras family; Int 99.8 4.8E-20 1.1E-24 129.0 13.0 87 32-120 75-161 (162)
35 cd04110 Rab35 Rab35 subfamily. 99.8 7.3E-20 1.6E-24 133.0 14.1 89 32-123 82-170 (199)
36 cd01865 Rab3 Rab3 subfamily. 99.8 6.2E-20 1.4E-24 129.2 13.2 87 32-120 77-163 (165)
37 KOG0395|consensus 99.8 9.4E-20 2E-24 132.1 14.3 90 32-123 78-168 (196)
38 cd01874 Cdc42 Cdc42 subfamily. 99.8 4.6E-20 9.9E-25 131.6 11.9 86 31-119 75-174 (175)
39 cd01868 Rab11_like Rab11-like. 99.8 1E-19 2.3E-24 127.8 13.4 86 32-119 79-164 (165)
40 cd04103 Centaurin_gamma Centau 99.8 5.1E-20 1.1E-24 129.4 11.0 88 29-118 66-157 (158)
41 cd04144 Ras2 Ras2 subfamily. 99.8 1.9E-19 4.1E-24 129.8 13.1 97 29-125 71-168 (190)
42 cd04125 RabA_like RabA-like su 99.8 2.9E-19 6.4E-24 128.4 13.9 92 30-123 74-165 (188)
43 cd04109 Rab28 Rab28 subfamily. 99.8 2.2E-19 4.7E-24 132.0 13.4 94 29-122 74-168 (215)
44 cd04112 Rab26 Rab26 subfamily. 99.8 2.4E-19 5.3E-24 129.3 13.1 92 30-123 75-166 (191)
45 cd04140 ARHI_like ARHI subfami 99.8 2.4E-19 5.3E-24 126.2 12.6 87 32-118 76-163 (165)
46 cd04119 RJL RJL (RabJ-Like) su 99.8 2.8E-19 6.1E-24 125.3 12.7 91 30-120 74-167 (168)
47 KOG0095|consensus 99.8 1.2E-19 2.6E-24 123.6 10.3 110 12-123 2-172 (213)
48 cd01864 Rab19 Rab19 subfamily. 99.8 3.3E-19 7.2E-24 125.4 13.0 85 32-118 79-164 (165)
49 PLN03071 GTP-binding nuclear p 99.8 2.2E-19 4.7E-24 132.4 12.5 86 32-122 89-174 (219)
50 cd04107 Rab32_Rab38 Rab38/Rab3 99.8 2.9E-19 6.4E-24 129.9 12.9 95 29-123 74-171 (201)
51 PTZ00369 Ras-like protein; Pro 99.8 4.3E-19 9.4E-24 127.8 13.4 90 32-123 80-170 (189)
52 cd04136 Rap_like Rap-like subf 99.8 3.5E-19 7.6E-24 124.6 12.4 86 32-119 76-162 (163)
53 cd04175 Rap1 Rap1 subgroup. T 99.8 3.8E-19 8.3E-24 124.9 12.6 86 32-119 76-162 (164)
54 cd04128 Spg1 Spg1p. Spg1p (se 99.8 3E-19 6.6E-24 128.2 12.3 88 31-121 75-167 (182)
55 cd01871 Rac1_like Rac1-like su 99.8 3.2E-19 6.9E-24 127.1 11.7 86 30-118 74-173 (174)
56 cd04134 Rho3 Rho3 subfamily. 99.8 5.3E-19 1.1E-23 127.4 11.8 90 30-122 73-176 (189)
57 cd04145 M_R_Ras_like M-Ras/R-R 99.8 8.9E-19 1.9E-23 122.6 12.6 86 32-119 77-163 (164)
58 cd04142 RRP22 RRP22 subfamily. 99.8 5.9E-19 1.3E-23 128.3 12.0 95 28-124 80-178 (198)
59 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.8 6.5E-19 1.4E-23 130.1 12.4 88 32-122 76-178 (222)
60 smart00173 RAS Ras subfamily o 99.8 9.4E-19 2E-23 122.7 12.7 88 32-120 75-162 (164)
61 cd04113 Rab4 Rab4 subfamily. 99.8 1.1E-18 2.3E-23 122.2 12.3 86 31-118 75-160 (161)
62 cd00877 Ran Ran (Ras-related n 99.8 9.9E-19 2.1E-23 123.5 12.1 87 30-121 74-160 (166)
63 cd04176 Rap2 Rap2 subgroup. T 99.8 1.1E-18 2.3E-23 122.4 12.1 87 31-119 75-162 (163)
64 KOG0083|consensus 99.8 1.1E-19 2.4E-24 121.6 6.3 91 31-123 73-163 (192)
65 smart00175 RAB Rab subfamily o 99.8 1.9E-18 4.2E-23 120.8 12.9 90 30-121 74-163 (164)
66 cd04146 RERG_RasL11_like RERG/ 99.8 1.4E-18 2.9E-23 122.2 11.5 107 14-120 45-164 (165)
67 cd04106 Rab23_lke Rab23-like s 99.8 1.7E-18 3.7E-23 121.1 11.9 86 30-118 76-161 (162)
68 cd01873 RhoBTB RhoBTB subfamil 99.8 3.1E-18 6.7E-23 124.2 13.3 103 13-118 63-194 (195)
69 cd04116 Rab9 Rab9 subfamily. 99.8 4.6E-18 1E-22 120.0 13.3 86 32-118 81-169 (170)
70 cd04138 H_N_K_Ras_like H-Ras/N 99.8 3.7E-18 8E-23 118.9 12.5 85 32-119 76-161 (162)
71 cd04115 Rab33B_Rab33A Rab33B/R 99.8 3.2E-18 6.9E-23 121.1 12.2 86 32-119 79-168 (170)
72 PTZ00099 rab6; Provisional 99.8 1.2E-17 2.6E-22 119.3 15.3 108 13-122 26-144 (176)
73 smart00174 RHO Rho (Ras homolo 99.8 1.7E-18 3.8E-23 122.5 10.8 90 28-120 69-172 (174)
74 cd04101 RabL4 RabL4 (Rab-like4 99.8 4.4E-18 9.5E-23 119.3 12.5 88 29-119 76-163 (164)
75 cd04108 Rab36_Rab34 Rab34/Rab3 99.8 6.8E-18 1.5E-22 119.8 13.1 90 30-121 74-166 (170)
76 cd04148 RGK RGK subfamily. Th 99.8 5.7E-18 1.2E-22 125.1 13.1 108 14-123 48-166 (221)
77 cd04132 Rho4_like Rho4-like su 99.8 5.1E-18 1.1E-22 121.7 12.2 93 28-123 72-170 (187)
78 cd04123 Rab21 Rab21 subfamily. 99.8 9.1E-18 2E-22 116.9 13.0 88 30-119 74-161 (162)
79 cd04124 RabL2 RabL2 subfamily. 99.8 9.2E-18 2E-22 117.8 12.2 85 32-122 76-160 (161)
80 cd01860 Rab5_related Rab5-rela 99.8 1.6E-17 3.4E-22 116.3 13.2 88 30-119 75-162 (163)
81 PLN03118 Rab family protein; P 99.8 1.8E-17 3.9E-22 121.4 14.0 90 32-122 89-179 (211)
82 cd04118 Rab24 Rab24 subfamily. 99.8 2.1E-17 4.6E-22 119.1 14.0 90 30-122 75-168 (193)
83 cd04130 Wrch_1 Wrch-1 subfamil 99.8 9.1E-18 2E-22 119.1 11.6 85 30-117 73-171 (173)
84 cd04143 Rhes_like Rhes_like su 99.8 1E-17 2.2E-22 125.7 12.3 94 29-122 72-173 (247)
85 cd04114 Rab30 Rab30 subfamily. 99.8 2.8E-17 6.1E-22 115.7 13.8 86 32-119 83-168 (169)
86 cd01861 Rab6 Rab6 subfamily. 99.8 1.9E-17 4.1E-22 115.6 12.5 87 30-118 74-160 (161)
87 cd04177 RSR1 RSR1 subgroup. R 99.8 2.9E-17 6.3E-22 115.9 12.7 87 32-120 76-164 (168)
88 cd04129 Rho2 Rho2 subfamily. 99.7 2.1E-17 4.6E-22 118.8 11.8 92 29-123 73-176 (187)
89 cd04135 Tc10 TC10 subfamily. 99.7 2.3E-17 4.9E-22 116.8 11.7 87 30-119 73-173 (174)
90 smart00176 RAN Ran (Ras-relate 99.7 2E-17 4.3E-22 120.5 11.3 104 14-122 42-156 (200)
91 cd04139 RalA_RalB RalA/RalB su 99.7 5.2E-17 1.1E-21 113.4 12.6 87 32-120 75-162 (164)
92 cd01892 Miro2 Miro2 subfamily. 99.7 2.4E-17 5.2E-22 116.8 10.6 87 30-120 79-166 (169)
93 KOG4252|consensus 99.7 1.6E-17 3.6E-22 116.3 8.9 115 6-123 9-184 (246)
94 cd01862 Rab7 Rab7 subfamily. 99.7 1.3E-16 2.7E-21 112.5 12.9 93 30-122 74-169 (172)
95 cd01863 Rab18 Rab18 subfamily. 99.7 1.4E-16 3E-21 111.3 12.3 87 29-118 73-160 (161)
96 cd04137 RheB Rheb (Ras Homolog 99.7 2.9E-16 6.4E-21 111.8 13.0 89 32-122 76-165 (180)
97 cd01870 RhoA_like RhoA-like su 99.7 2.5E-16 5.4E-21 111.5 12.1 87 30-119 74-174 (175)
98 cd00876 Ras Ras family. The R 99.7 2.6E-16 5.7E-21 109.3 11.6 87 30-118 72-159 (160)
99 cd00154 Rab Rab family. Rab G 99.7 3.2E-16 6.9E-21 108.2 11.8 85 31-117 75-159 (159)
100 cd04149 Arf6 Arf6 subfamily. 99.7 3.1E-16 6.7E-21 111.0 10.2 82 32-117 80-167 (168)
101 cd01893 Miro1 Miro1 subfamily. 99.7 5.3E-16 1.1E-20 109.3 11.2 89 30-121 72-165 (166)
102 cd04158 ARD1 ARD1 subfamily. 99.7 4.1E-16 8.9E-21 110.3 10.4 90 29-122 67-163 (169)
103 cd00157 Rho Rho (Ras homology) 99.7 5.6E-16 1.2E-20 109.0 10.8 86 29-117 72-170 (171)
104 KOG0393|consensus 99.7 9E-16 1.9E-20 110.2 10.7 89 32-123 80-182 (198)
105 cd04147 Ras_dva Ras-dva subfam 99.7 1.6E-15 3.4E-20 110.1 12.1 90 29-120 71-163 (198)
106 PLN00223 ADP-ribosylation fact 99.7 1.3E-15 2.8E-20 109.2 11.1 83 32-121 88-179 (181)
107 smart00177 ARF ARF-like small 99.7 3.8E-16 8.3E-21 111.2 8.2 84 32-119 84-173 (175)
108 cd04162 Arl9_Arfrp2_like Arl9/ 99.7 3.1E-16 6.6E-21 110.6 7.1 87 28-117 67-163 (164)
109 PTZ00132 GTP-binding nuclear p 99.6 4E-15 8.6E-20 109.2 12.6 86 32-122 85-170 (215)
110 cd04150 Arf1_5_like Arf1-Arf5- 99.6 5.4E-16 1.2E-20 108.8 7.5 85 30-117 69-158 (159)
111 PTZ00133 ADP-ribosylation fact 99.6 8E-16 1.7E-20 110.3 8.2 87 32-122 88-180 (182)
112 cd04154 Arl2 Arl2 subfamily. 99.6 3.1E-15 6.7E-20 106.1 10.2 82 32-117 85-172 (173)
113 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.6 1.1E-14 2.3E-19 104.5 11.0 90 29-122 76-172 (183)
114 PRK12299 obgE GTPase CgtA; Rev 99.6 9.3E-15 2E-19 113.9 11.5 90 32-121 240-329 (335)
115 TIGR02528 EutP ethanolamine ut 99.6 5.7E-15 1.2E-19 101.3 8.8 75 32-116 66-141 (142)
116 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.6 6.2E-15 1.3E-19 104.8 7.6 82 32-117 86-173 (174)
117 cd00879 Sar1 Sar1 subfamily. 99.6 2.2E-14 4.7E-19 103.0 10.0 83 32-118 90-189 (190)
118 cd04156 ARLTS1 ARLTS1 subfamil 99.6 1.1E-14 2.3E-19 101.6 7.9 85 29-117 68-159 (160)
119 cd01897 NOG NOG1 is a nucleola 99.6 2.6E-14 5.7E-19 100.4 9.8 85 30-119 81-167 (168)
120 cd04157 Arl6 Arl6 subfamily. 99.6 1.4E-14 3E-19 101.0 8.0 88 28-117 68-161 (162)
121 cd04102 RabL3 RabL3 (Rab-like3 99.6 9.7E-14 2.1E-18 101.2 11.8 93 14-106 52-176 (202)
122 cd00878 Arf_Arl Arf (ADP-ribos 99.6 2.4E-14 5.2E-19 99.7 8.3 84 30-117 68-157 (158)
123 cd01898 Obg Obg subfamily. Th 99.5 7.1E-14 1.5E-18 98.3 10.1 89 29-118 79-169 (170)
124 cd04151 Arl1 Arl1 subfamily. 99.5 3.2E-14 7E-19 99.3 7.4 85 29-117 67-157 (158)
125 cd04161 Arl2l1_Arl13_like Arl2 99.5 3.5E-14 7.6E-19 100.3 6.9 88 28-117 66-166 (167)
126 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.2E-13 2.5E-18 97.0 9.4 85 29-117 74-166 (167)
127 TIGR02729 Obg_CgtA Obg family 99.5 4E-13 8.7E-18 104.6 10.9 88 31-119 238-328 (329)
128 KOG3883|consensus 99.5 6.3E-13 1.4E-17 91.2 10.2 90 32-122 88-177 (198)
129 cd01878 HflX HflX subfamily. 99.5 3.1E-13 6.8E-18 98.2 9.4 81 32-119 124-204 (204)
130 smart00178 SAR Sar1p-like memb 99.5 5.1E-13 1.1E-17 95.8 10.0 83 32-118 88-183 (184)
131 cd04155 Arl3 Arl3 subfamily. 99.4 1.3E-12 2.8E-17 92.3 10.4 79 32-117 85-172 (173)
132 KOG1673|consensus 99.4 1.8E-12 3.8E-17 89.2 10.3 87 32-121 96-187 (205)
133 PRK15467 ethanolamine utilizat 99.4 1E-12 2.3E-17 92.2 9.5 83 30-123 66-150 (158)
134 PF00025 Arf: ADP-ribosylation 99.4 2.9E-12 6.3E-17 91.3 11.5 84 32-119 85-175 (175)
135 PRK12297 obgE GTPase CgtA; Rev 99.4 2.9E-12 6.2E-17 102.6 12.3 87 32-122 240-329 (424)
136 TIGR00157 ribosome small subun 99.4 2.3E-12 5.1E-17 96.6 8.9 83 29-117 37-120 (245)
137 cd04159 Arl10_like Arl10-like 99.4 4.8E-12 1E-16 87.2 9.5 84 30-117 69-158 (159)
138 PLN00023 GTP-binding protein; 99.4 1.7E-11 3.7E-16 94.6 13.2 67 29-95 107-189 (334)
139 PRK03003 GTP-binding protein D 99.4 7.6E-12 1.7E-16 101.9 10.7 85 32-122 297-384 (472)
140 TIGR03156 GTP_HflX GTP-binding 99.3 1.2E-11 2.6E-16 97.2 10.0 79 32-118 272-350 (351)
141 TIGR00436 era GTP-binding prot 99.3 1.3E-11 2.7E-16 93.8 9.8 83 31-121 82-165 (270)
142 KOG4423|consensus 99.3 4.8E-12 1E-16 89.4 6.8 92 32-123 102-197 (229)
143 PRK04213 GTP-binding protein; 99.3 7.9E-12 1.7E-16 90.6 7.7 54 64-121 131-193 (201)
144 KOG1707|consensus 99.3 3.2E-12 6.9E-17 103.5 5.7 113 32-148 83-199 (625)
145 PF02421 FeoB_N: Ferrous iron 99.3 3.5E-12 7.5E-17 89.2 5.2 75 32-115 82-156 (156)
146 PRK12296 obgE GTPase CgtA; Rev 99.3 2.1E-11 4.5E-16 99.1 10.0 90 32-122 240-342 (500)
147 TIGR00450 mnmE_trmE_thdF tRNA 99.3 1.8E-11 4E-16 98.7 9.6 78 32-123 286-363 (442)
148 COG1100 GTPase SAR1 and relate 99.3 1.1E-10 2.5E-15 85.4 12.3 89 32-122 81-187 (219)
149 PRK12298 obgE GTPase CgtA; Rev 99.3 6E-11 1.3E-15 94.3 11.0 89 32-121 241-334 (390)
150 PRK15494 era GTPase Era; Provi 99.3 5.4E-11 1.2E-15 93.1 10.2 80 32-121 135-217 (339)
151 KOG0073|consensus 99.2 2.5E-10 5.4E-15 79.2 11.7 87 32-122 87-180 (185)
152 TIGR00231 small_GTP small GTP- 99.2 1.1E-10 2.4E-15 79.9 10.2 82 32-116 77-160 (161)
153 cd01890 LepA LepA subfamily. 99.2 6.9E-11 1.5E-15 83.8 9.3 84 28-119 90-176 (179)
154 PRK11058 GTPase HflX; Provisio 99.2 1E-10 2.2E-15 94.1 11.2 83 32-121 280-363 (426)
155 TIGR03594 GTPase_EngA ribosome 99.2 1.6E-10 3.5E-15 92.9 12.4 83 32-121 258-345 (429)
156 KOG0096|consensus 99.2 2.1E-11 4.6E-16 86.4 5.8 85 32-121 86-170 (216)
157 PRK03003 GTP-binding protein D 99.2 7.2E-11 1.6E-15 96.2 9.1 79 32-121 121-200 (472)
158 cd04164 trmE TrmE (MnmE, ThdF, 99.2 1.2E-10 2.6E-15 80.3 8.5 75 30-119 82-156 (157)
159 cd04171 SelB SelB subfamily. 99.2 2E-10 4.2E-15 80.0 9.5 81 29-117 75-163 (164)
160 PRK05291 trmE tRNA modificatio 99.2 6.6E-11 1.4E-15 95.8 7.9 74 32-121 298-371 (449)
161 cd01895 EngA2 EngA2 subfamily. 99.2 3.3E-10 7.1E-15 79.2 10.5 83 30-118 86-173 (174)
162 cd04163 Era Era subfamily. Er 99.2 3.8E-10 8.3E-15 78.1 9.8 80 32-118 86-167 (168)
163 cd01881 Obg_like The Obg-like 99.1 3E-10 6.5E-15 80.0 8.2 90 29-118 75-175 (176)
164 cd01894 EngA1 EngA1 subfamily. 99.1 2.7E-10 5.9E-15 78.6 7.8 79 29-118 77-156 (157)
165 cd01887 IF2_eIF5B IF2/eIF5B (i 99.1 1.2E-09 2.6E-14 76.4 10.0 87 28-120 73-166 (168)
166 PRK00089 era GTPase Era; Revie 99.1 8.5E-10 1.8E-14 84.6 9.8 83 32-121 88-172 (292)
167 KOG0070|consensus 99.1 1.2E-09 2.6E-14 77.2 9.4 87 32-121 88-179 (181)
168 PF08477 Miro: Miro-like prote 99.1 5E-10 1.1E-14 74.3 7.0 40 32-74 77-119 (119)
169 PF10662 PduV-EutP: Ethanolami 99.1 1.3E-09 2.8E-14 74.9 8.5 75 32-116 67-142 (143)
170 cd01879 FeoB Ferrous iron tran 99.1 2.1E-09 4.6E-14 74.3 9.7 83 28-119 74-156 (158)
171 cd01891 TypA_BipA TypA (tyrosi 99.0 1.6E-09 3.5E-14 78.2 9.0 77 29-111 89-173 (194)
172 PRK09518 bifunctional cytidyla 99.0 2.3E-09 5.1E-14 91.3 11.1 82 32-121 536-622 (712)
173 PRK00454 engB GTP-binding prot 99.0 2.9E-09 6.3E-14 76.6 10.0 57 64-120 136-194 (196)
174 cd00881 GTP_translation_factor 99.0 1.5E-09 3.3E-14 77.1 8.5 86 29-120 86-187 (189)
175 TIGR00437 feoB ferrous iron tr 99.0 9.4E-10 2E-14 91.8 8.1 82 29-119 73-154 (591)
176 PRK00093 GTP-binding protein D 99.0 1.8E-09 3.8E-14 87.1 9.5 83 32-121 259-345 (435)
177 cd00882 Ras_like_GTPase Ras-li 99.0 6.3E-09 1.4E-13 70.2 10.7 87 29-117 69-157 (157)
178 COG1160 Predicted GTPases [Gen 99.0 9E-09 2E-13 81.9 12.6 84 32-121 264-352 (444)
179 cd01889 SelB_euk SelB subfamil 99.0 3.3E-09 7.1E-14 76.5 9.1 101 15-121 67-187 (192)
180 TIGR01393 lepA GTP-binding pro 99.0 3.6E-09 7.8E-14 88.4 10.2 87 28-122 93-182 (595)
181 PRK09554 feoB ferrous iron tra 99.0 3.8E-09 8.2E-14 90.4 10.5 79 32-119 89-167 (772)
182 TIGR03594 GTPase_EngA ribosome 99.0 3.7E-09 8.1E-14 85.0 9.7 80 31-121 81-161 (429)
183 KOG0075|consensus 99.0 2.5E-09 5.4E-14 73.1 7.0 102 13-121 62-183 (186)
184 PRK09518 bifunctional cytidyla 99.0 2.9E-09 6.3E-14 90.8 8.7 78 32-121 358-437 (712)
185 PRK12288 GTPase RsgA; Reviewed 98.9 5E-09 1.1E-13 82.2 8.9 103 30-146 122-225 (347)
186 PRK00093 GTP-binding protein D 98.9 6.8E-09 1.5E-13 83.7 9.7 76 31-119 83-161 (435)
187 KOG1489|consensus 98.9 1E-08 2.2E-13 78.3 9.0 83 32-117 278-364 (366)
188 COG0536 Obg Predicted GTPase [ 98.9 8.3E-09 1.8E-13 79.5 8.6 92 32-123 241-336 (369)
189 cd01854 YjeQ_engC YjeQ/EngC. 98.9 1E-08 2.2E-13 78.6 8.8 81 30-117 80-161 (287)
190 PRK00098 GTPase RsgA; Reviewed 98.9 8.3E-09 1.8E-13 79.5 8.3 82 29-116 81-163 (298)
191 cd01859 MJ1464 MJ1464. This f 98.9 1.1E-08 2.3E-13 71.4 7.7 85 29-121 13-97 (156)
192 PRK12289 GTPase RsgA; Reviewed 98.9 1.3E-08 2.9E-13 79.9 8.9 82 30-118 91-173 (352)
193 cd01888 eIF2_gamma eIF2-gamma 98.9 1.4E-08 3.1E-13 73.9 8.3 89 28-120 106-199 (203)
194 KOG0076|consensus 98.9 6.6E-09 1.4E-13 72.9 5.9 87 32-122 96-189 (197)
195 COG0486 ThdF Predicted GTPase 98.8 1.4E-08 3E-13 81.1 8.1 79 32-122 300-378 (454)
196 cd01876 YihA_EngB The YihA (En 98.8 2.3E-08 4.9E-13 69.4 8.2 80 31-118 84-169 (170)
197 cd01855 YqeH YqeH. YqeH is an 98.8 2.2E-08 4.8E-13 72.1 8.1 107 27-146 33-147 (190)
198 TIGR03598 GTPase_YsxC ribosome 98.8 1.8E-08 3.8E-13 71.9 7.4 73 31-109 103-179 (179)
199 COG1160 Predicted GTPases [Gen 98.8 3.1E-08 6.8E-13 78.9 9.4 78 32-120 87-165 (444)
200 cd01896 DRG The developmentall 98.8 4.8E-08 1E-12 72.8 9.8 49 64-119 177-225 (233)
201 COG1159 Era GTPase [General fu 98.8 3.4E-08 7.3E-13 74.9 9.0 83 32-121 89-173 (298)
202 PF00009 GTP_EFTU: Elongation 98.8 7.5E-08 1.6E-12 69.2 10.1 85 28-120 93-187 (188)
203 smart00010 small_GTPase Small 98.8 3.6E-08 7.8E-13 65.5 7.5 80 18-109 1-115 (124)
204 TIGR00475 selB selenocysteine- 98.8 5E-08 1.1E-12 81.5 9.9 85 29-122 74-168 (581)
205 cd00880 Era_like Era (E. coli 98.8 5E-08 1.1E-12 66.6 8.4 83 30-118 77-162 (163)
206 KOG1423|consensus 98.8 5.7E-08 1.2E-12 74.0 9.2 112 3-120 58-271 (379)
207 KOG0071|consensus 98.7 3.6E-08 7.8E-13 67.0 6.6 85 32-120 88-178 (180)
208 COG0370 FeoB Fe2+ transport sy 98.7 3E-08 6.5E-13 82.3 7.4 82 32-122 85-166 (653)
209 TIGR00487 IF-2 translation ini 98.7 1.1E-07 2.5E-12 79.3 10.7 74 32-117 162-247 (587)
210 PRK05433 GTP-binding protein L 98.7 2.3E-07 5.1E-12 77.7 11.9 87 28-122 97-186 (600)
211 cd01849 YlqF_related_GTPase Yl 98.7 1.9E-07 4E-12 65.2 8.5 82 30-119 1-84 (155)
212 COG2262 HflX GTPases [General 98.7 2.6E-07 5.7E-12 72.8 10.0 84 32-122 275-358 (411)
213 CHL00189 infB translation init 98.6 2.8E-07 6E-12 78.5 10.6 79 32-119 322-409 (742)
214 PRK05306 infB translation init 98.6 2.4E-07 5.1E-12 79.5 9.7 77 30-118 362-450 (787)
215 COG0218 Predicted GTPase [Gene 98.6 3.7E-07 8.1E-12 65.8 8.9 83 32-121 110-198 (200)
216 COG2229 Predicted GTPase [Gene 98.6 1.2E-06 2.6E-11 62.1 10.8 80 32-118 95-176 (187)
217 KOG0072|consensus 98.6 5.8E-07 1.3E-11 61.5 8.6 86 32-121 89-180 (182)
218 cd04165 GTPBP1_like GTPBP1-lik 98.5 9.3E-07 2E-11 65.5 9.8 83 28-117 109-220 (224)
219 TIGR03597 GTPase_YqeH ribosome 98.5 4.7E-07 1E-11 71.6 8.7 104 30-147 65-175 (360)
220 TIGR00483 EF-1_alpha translati 98.5 6.4E-07 1.4E-11 72.3 9.2 81 28-112 108-199 (426)
221 TIGR01394 TypA_BipA GTP-bindin 98.5 8E-07 1.7E-11 74.4 9.0 89 28-122 87-193 (594)
222 cd01858 NGP_1 NGP-1. Autoanti 98.5 1E-06 2.2E-11 61.6 7.8 115 28-147 8-123 (157)
223 TIGR03680 eif2g_arch translati 98.5 1.4E-06 3E-11 70.0 9.3 89 29-121 104-197 (406)
224 PRK12317 elongation factor 1-a 98.5 1.6E-06 3.4E-11 70.0 9.6 81 28-112 107-197 (425)
225 PRK04000 translation initiatio 98.4 1.3E-06 2.8E-11 70.2 8.8 85 29-121 109-202 (411)
226 KOG3905|consensus 98.4 5.9E-06 1.3E-10 63.8 11.0 60 63-122 222-292 (473)
227 PRK10512 selenocysteinyl-tRNA- 98.4 2.3E-06 5.1E-11 71.9 9.7 84 28-120 74-166 (614)
228 COG4917 EutP Ethanolamine util 98.4 4.1E-06 8.9E-11 56.1 8.8 98 19-118 3-144 (148)
229 KOG0074|consensus 98.3 1.2E-06 2.5E-11 59.9 5.2 84 32-118 89-177 (185)
230 COG1084 Predicted GTPase [Gene 98.3 4.3E-06 9.3E-11 64.4 8.4 84 32-121 251-337 (346)
231 cd01857 HSR1_MMR1 HSR1/MMR1. 98.3 2.3E-06 5E-11 58.7 6.3 72 28-107 11-84 (141)
232 TIGR00101 ureG urease accessor 98.3 6.6E-06 1.4E-10 59.9 8.9 93 18-120 92-196 (199)
233 COG0481 LepA Membrane GTPase L 98.3 8.7E-06 1.9E-10 65.6 10.1 87 30-124 101-190 (603)
234 cd04104 p47_IIGP_like p47 (47- 98.3 1.1E-05 2.3E-10 58.5 9.9 74 44-122 92-186 (197)
235 TIGR03596 GTPase_YlqF ribosome 98.3 7.3E-06 1.6E-10 62.6 8.9 85 28-122 21-105 (276)
236 PRK13796 GTPase YqeH; Provisio 98.3 7.2E-06 1.6E-10 65.0 9.0 102 31-146 72-180 (365)
237 KOG0462|consensus 98.2 7E-06 1.5E-10 67.1 8.4 86 28-122 148-237 (650)
238 COG0532 InfB Translation initi 98.2 1.8E-05 3.9E-10 64.4 10.4 82 27-120 77-170 (509)
239 PRK10218 GTP-binding protein; 98.2 1.2E-05 2.7E-10 67.5 9.7 89 28-122 91-197 (607)
240 KOG1490|consensus 98.2 1.4E-05 3.1E-10 64.7 9.4 87 32-121 251-342 (620)
241 TIGR00491 aIF-2 translation in 98.2 1.7E-05 3.6E-10 66.5 10.1 84 28-120 92-216 (590)
242 KOG0077|consensus 98.2 7.4E-06 1.6E-10 57.3 6.4 86 32-118 91-191 (193)
243 PRK09563 rbgA GTPase YlqF; Rev 98.2 1.7E-05 3.6E-10 60.9 9.0 85 28-122 24-108 (287)
244 TIGR00073 hypB hydrogenase acc 98.1 1.5E-05 3.4E-10 58.2 8.2 55 64-118 149-205 (207)
245 cd01856 YlqF YlqF. Proteins o 98.1 1.8E-05 3.8E-10 56.1 8.3 83 28-120 19-101 (171)
246 cd04168 TetM_like Tet(M)-like 98.1 3.8E-05 8.2E-10 57.4 10.1 42 29-76 88-129 (237)
247 PRK01889 GTPase RsgA; Reviewed 98.1 1.9E-05 4.2E-10 62.4 8.6 79 30-116 114-193 (356)
248 cd04105 SR_beta Signal recogni 98.1 1.3E-05 2.8E-10 58.4 7.0 46 30-77 74-123 (203)
249 cd01884 EF_Tu EF-Tu subfamily. 98.1 6.3E-05 1.4E-09 54.6 10.5 74 29-108 89-171 (195)
250 PRK09866 hypothetical protein; 98.1 5.2E-05 1.1E-09 63.7 10.8 85 30-118 260-351 (741)
251 KOG1191|consensus 98.1 1.2E-05 2.5E-10 65.0 6.5 92 32-124 352-454 (531)
252 PF04670 Gtr1_RagA: Gtr1/RagA 98.0 2.7E-05 5.9E-10 58.0 7.8 86 32-121 80-177 (232)
253 cd04167 Snu114p Snu114p subfam 98.0 2.5E-05 5.4E-10 57.2 7.3 43 28-76 94-136 (213)
254 KOG1707|consensus 98.0 3.3E-05 7.2E-10 63.5 8.4 86 32-122 499-585 (625)
255 cd01883 EF1_alpha Eukaryotic e 98.0 1.8E-05 3.9E-10 58.3 6.3 77 28-109 100-194 (219)
256 cd04166 CysN_ATPS CysN_ATPS su 98.0 4E-05 8.6E-10 56.0 7.9 78 28-110 100-184 (208)
257 COG1163 DRG Predicted GTPase [ 98.0 0.00011 2.4E-09 56.7 10.3 51 63-120 239-289 (365)
258 PRK14845 translation initiatio 98.0 0.00014 3E-09 64.4 11.6 84 28-120 549-673 (1049)
259 PRK12735 elongation factor Tu; 97.9 8.9E-05 1.9E-09 59.4 9.6 85 30-120 100-203 (396)
260 TIGR00485 EF-Tu translation el 97.9 8.5E-05 1.8E-09 59.5 9.5 71 30-106 100-179 (394)
261 KOG0705|consensus 97.9 4.5E-05 9.8E-10 62.5 7.8 90 32-122 99-191 (749)
262 PRK13351 elongation factor G; 97.9 0.00018 3.9E-09 61.6 11.7 28 96-123 254-281 (687)
263 PRK12736 elongation factor Tu; 97.9 0.00015 3.2E-09 58.1 10.4 86 29-120 99-201 (394)
264 PRK13768 GTPase; Provisional 97.9 8.8E-05 1.9E-09 56.0 8.6 87 29-120 129-247 (253)
265 PTZ00327 eukaryotic translatio 97.9 0.00011 2.4E-09 59.9 9.5 90 28-121 140-234 (460)
266 PRK04004 translation initiatio 97.9 0.00014 3.1E-09 61.0 9.9 83 28-119 94-217 (586)
267 COG1162 Predicted GTPases [Gen 97.9 0.00015 3.3E-09 55.7 9.1 82 32-118 83-165 (301)
268 PF05783 DLIC: Dynein light in 97.8 0.00015 3.2E-09 59.3 9.3 59 64-122 197-266 (472)
269 cd01850 CDC_Septin CDC/Septin. 97.8 0.00011 2.3E-09 56.2 7.2 40 64-103 144-185 (276)
270 KOG1532|consensus 97.8 0.00089 1.9E-08 51.0 11.7 28 95-122 239-266 (366)
271 TIGR02034 CysN sulfate adenyly 97.8 0.00025 5.4E-09 57.0 9.3 78 28-110 103-187 (406)
272 PRK05124 cysN sulfate adenylyl 97.7 0.00019 4E-09 58.9 8.1 78 29-111 131-216 (474)
273 PRK05506 bifunctional sulfate 97.7 0.0004 8.7E-09 58.9 10.1 76 30-110 129-211 (632)
274 PRK00741 prfC peptide chain re 97.7 0.00064 1.4E-08 56.5 11.0 29 95-123 249-277 (526)
275 PLN00043 elongation factor 1-a 97.7 0.0002 4.3E-09 58.4 7.4 77 28-110 108-203 (447)
276 CHL00071 tufA elongation facto 97.7 0.00063 1.4E-08 54.8 10.2 72 30-107 100-180 (409)
277 PF06858 NOG1: Nucleolar GTP-b 97.6 0.00038 8.3E-09 40.2 5.6 44 28-74 13-58 (58)
278 KOG1145|consensus 97.5 0.0013 2.8E-08 54.2 10.6 80 28-119 224-315 (683)
279 PF09439 SRPRB: Signal recogni 97.5 0.00065 1.4E-08 48.7 7.9 44 32-77 79-126 (181)
280 PRK00049 elongation factor Tu; 97.5 0.0015 3.1E-08 52.5 9.8 86 28-119 98-202 (396)
281 COG5257 GCD11 Translation init 97.5 0.00094 2E-08 51.8 8.2 111 12-126 80-208 (415)
282 cd01852 AIG1 AIG1 (avrRpt2-ind 97.4 0.0019 4.1E-08 46.6 9.5 88 32-121 87-185 (196)
283 TIGR00750 lao LAO/AO transport 97.4 0.0006 1.3E-08 52.7 6.8 94 17-120 126-238 (300)
284 PRK09435 membrane ATPase/prote 97.3 0.0021 4.5E-08 50.5 9.2 93 18-120 149-260 (332)
285 cd04169 RF3 RF3 subfamily. Pe 97.3 0.0029 6.3E-08 48.1 9.6 43 29-77 95-137 (267)
286 PLN03127 Elongation factor Tu; 97.3 0.0022 4.8E-08 52.3 9.5 85 30-120 149-252 (447)
287 cd04170 EF-G_bact Elongation f 97.3 0.0023 5.1E-08 48.5 8.8 72 29-108 88-161 (268)
288 PLN03126 Elongation factor Tu; 97.3 0.0021 4.5E-08 52.9 8.7 70 32-107 171-249 (478)
289 TIGR00503 prfC peptide chain r 97.2 0.004 8.6E-08 51.9 10.3 29 95-123 250-278 (527)
290 PF03029 ATP_bind_1: Conserved 97.2 0.001 2.2E-08 49.8 5.8 82 31-119 125-236 (238)
291 PRK12739 elongation factor G; 97.2 0.007 1.5E-07 52.0 11.4 28 96-123 254-281 (691)
292 KOG0090|consensus 97.2 0.0073 1.6E-07 44.3 9.6 43 32-76 112-158 (238)
293 PF01926 MMR_HSR1: 50S ribosom 97.1 0.0017 3.6E-08 42.7 5.9 13 19-31 1-13 (116)
294 cd04178 Nucleostemin_like Nucl 97.1 0.0012 2.6E-08 46.9 5.4 42 30-77 1-44 (172)
295 cd01886 EF-G Elongation factor 97.1 0.0056 1.2E-07 46.7 9.0 44 28-77 87-130 (270)
296 PRK10463 hydrogenase nickel in 97.0 0.0021 4.5E-08 49.4 6.1 55 64-118 231-287 (290)
297 PRK00007 elongation factor G; 97.0 0.014 3.1E-07 50.1 11.6 29 95-123 255-283 (693)
298 COG0378 HypB Ni2+-binding GTPa 97.0 0.0021 4.5E-08 46.4 5.3 53 66-118 145-199 (202)
299 cd00066 G-alpha G protein alph 97.0 0.0089 1.9E-07 46.6 9.3 106 15-122 160-313 (317)
300 PRK12740 elongation factor G; 96.9 0.0068 1.5E-07 51.8 9.2 29 95-123 237-265 (668)
301 TIGR00484 EF-G translation elo 96.9 0.0082 1.8E-07 51.6 9.0 42 30-77 100-141 (689)
302 cd01885 EF2 EF2 (for archaea a 96.8 0.0048 1E-07 45.7 6.7 43 28-76 96-138 (222)
303 smart00275 G_alpha G protein a 96.8 0.034 7.4E-07 43.8 11.7 107 15-122 183-336 (342)
304 PTZ00141 elongation factor 1- 96.8 0.014 2.9E-07 47.7 9.2 78 28-110 108-203 (446)
305 KOG3886|consensus 96.7 0.01 2.2E-07 44.3 7.1 43 32-77 85-130 (295)
306 COG3596 Predicted GTPase [Gene 96.7 0.018 3.9E-07 43.9 8.5 58 64-121 149-223 (296)
307 PF03308 ArgK: ArgK protein; 96.6 0.0039 8.4E-08 47.1 4.4 57 64-121 168-231 (266)
308 KOG1486|consensus 96.5 0.048 1E-06 41.3 9.9 51 64-121 239-289 (364)
309 TIGR02836 spore_IV_A stage IV 96.5 0.033 7.1E-07 45.2 9.4 64 47-117 169-234 (492)
310 cd01882 BMS1 Bms1. Bms1 is an 96.5 0.024 5.2E-07 42.0 8.3 73 29-107 104-183 (225)
311 KOG0461|consensus 96.4 0.014 3E-07 46.0 6.8 100 22-128 87-201 (522)
312 KOG1144|consensus 96.1 0.046 9.9E-07 47.0 8.7 33 96-128 663-695 (1064)
313 COG5256 TEF1 Translation elong 96.0 0.064 1.4E-06 43.1 8.5 76 32-111 112-202 (428)
314 cd01899 Ygr210 Ygr210 subfamil 95.9 0.017 3.8E-07 45.1 5.3 54 64-121 215-270 (318)
315 KOG1143|consensus 95.9 0.17 3.7E-06 40.5 10.5 22 10-31 160-181 (591)
316 COG1161 Predicted GTPases [Gen 95.9 0.022 4.9E-07 44.5 5.6 76 29-113 35-110 (322)
317 KOG2486|consensus 95.8 0.0071 1.5E-07 46.1 2.5 54 64-117 249-313 (320)
318 PTZ00258 GTP-binding protein; 95.8 0.081 1.8E-06 42.5 8.4 43 63-106 220-266 (390)
319 COG3276 SelB Selenocysteine-sp 95.6 0.092 2E-06 42.5 8.1 84 28-120 73-162 (447)
320 COG1217 TypA Predicted membran 95.5 0.075 1.6E-06 43.5 7.4 88 30-123 93-198 (603)
321 PF04548 AIG1: AIG1 family; I 95.5 0.077 1.7E-06 38.9 6.9 14 18-31 1-14 (212)
322 PF05049 IIGP: Interferon-indu 95.3 0.12 2.6E-06 41.3 7.9 76 43-123 125-221 (376)
323 COG1703 ArgK Putative periplas 95.3 0.19 4.2E-06 38.9 8.6 94 19-122 145-256 (323)
324 KOG0410|consensus 95.1 0.017 3.7E-07 45.1 2.6 80 32-121 261-342 (410)
325 PF00735 Septin: Septin; Inte 95.0 0.048 1E-06 41.9 4.8 62 32-100 117-181 (281)
326 TIGR00991 3a0901s02IAP34 GTP-b 94.9 0.12 2.6E-06 40.2 6.6 17 15-31 36-52 (313)
327 cd01853 Toc34_like Toc34-like 94.8 0.15 3.2E-06 38.5 6.8 82 12-94 26-145 (249)
328 COG2895 CysN GTPases - Sulfate 94.5 0.27 5.9E-06 39.0 7.8 76 27-109 108-192 (431)
329 KOG2423|consensus 94.2 0.3 6.5E-06 39.4 7.5 86 29-119 214-299 (572)
330 PRK09602 translation-associate 94.2 0.095 2.1E-06 42.2 4.8 52 64-119 218-270 (396)
331 TIGR00490 aEF-2 translation el 93.9 0.11 2.3E-06 45.1 4.9 43 28-76 109-151 (720)
332 KOG1424|consensus 93.4 0.17 3.7E-06 41.8 5.0 64 30-104 176-244 (562)
333 KOG0466|consensus 93.3 0.065 1.4E-06 41.7 2.3 60 64-123 180-244 (466)
334 PF00503 G-alpha: G-protein al 92.8 0.59 1.3E-05 37.4 7.3 102 15-118 235-388 (389)
335 KOG0780|consensus 92.7 0.9 2E-05 36.6 7.9 89 20-121 104-211 (483)
336 KOG0458|consensus 92.5 1.5 3.2E-05 37.0 9.2 75 32-111 282-373 (603)
337 TIGR03348 VI_IcmF type VI secr 92.4 0.47 1E-05 43.5 6.9 43 32-76 205-256 (1169)
338 cd03110 Fer4_NifH_child This p 92.1 1.4 3.1E-05 30.9 7.9 63 28-99 114-176 (179)
339 COG5192 BMS1 GTP-binding prote 92.0 1.5 3.2E-05 37.2 8.7 98 2-105 54-211 (1077)
340 PRK14974 cell division protein 92.0 1.2 2.6E-05 35.2 7.9 41 67-113 283-323 (336)
341 PRK10416 signal recognition pa 91.9 1.4 3E-05 34.5 8.2 42 66-113 262-303 (318)
342 PRK07560 elongation factor EF- 91.7 0.84 1.8E-05 39.8 7.4 43 28-76 110-152 (731)
343 PF09547 Spore_IV_A: Stage IV 91.4 3.8 8.2E-05 33.6 10.1 69 41-116 162-233 (492)
344 smart00053 DYNc Dynamin, GTPas 91.2 0.65 1.4E-05 34.9 5.5 41 32-77 166-206 (240)
345 KOG0463|consensus 91.1 2.2 4.7E-05 34.5 8.4 19 13-31 128-147 (641)
346 PF09419 PGP_phosphatase: Mito 90.9 4.4 9.4E-05 28.8 9.3 67 44-115 61-127 (168)
347 COG5258 GTPBP1 GTPase [General 90.7 4 8.6E-05 33.1 9.5 26 95-121 314-339 (527)
348 KOG4273|consensus 90.7 0.41 8.9E-06 36.3 3.9 41 32-76 82-122 (418)
349 TIGR00993 3a0901s04IAP86 chlor 90.3 0.71 1.5E-05 39.8 5.4 22 10-31 111-132 (763)
350 KOG1547|consensus 89.6 3.4 7.5E-05 31.4 7.9 18 14-31 43-60 (336)
351 KOG0082|consensus 89.4 7.4 0.00016 31.0 10.2 106 16-123 195-347 (354)
352 PLN00116 translation elongatio 89.4 0.59 1.3E-05 41.4 4.5 43 28-76 121-163 (843)
353 KOG0468|consensus 89.3 0.91 2E-05 39.1 5.3 38 32-75 224-261 (971)
354 PF00448 SRP54: SRP54-type pro 89.2 0.57 1.2E-05 34.0 3.7 46 19-72 3-65 (196)
355 PRK13505 formate--tetrahydrofo 89.2 3.5 7.6E-05 34.7 8.5 71 43-120 357-429 (557)
356 KOG0447|consensus 89.2 1.7 3.7E-05 36.7 6.7 66 32-102 452-523 (980)
357 COG1149 MinD superfamily P-loo 89.1 4 8.8E-05 31.3 8.1 55 32-98 189-243 (284)
358 KOG2484|consensus 88.7 1.2 2.7E-05 35.8 5.4 43 29-77 147-191 (435)
359 PTZ00416 elongation factor 2; 88.3 0.67 1.5E-05 41.0 4.1 43 28-76 115-157 (836)
360 KOG3887|consensus 87.9 7.8 0.00017 29.5 8.8 88 32-121 105-203 (347)
361 KOG1954|consensus 87.9 0.76 1.6E-05 36.9 3.7 41 32-77 185-225 (532)
362 KOG1970|consensus 87.0 2.8 6E-05 35.4 6.6 44 32-76 197-240 (634)
363 PF11111 CENP-M: Centromere pr 86.8 9.3 0.0002 27.3 9.7 89 30-121 66-154 (176)
364 PRK14721 flhF flagellar biosyn 85.8 7.6 0.00016 31.7 8.5 41 67-113 330-371 (420)
365 KOG0448|consensus 84.6 6.9 0.00015 33.9 7.9 41 64-104 262-310 (749)
366 PRK12727 flagellar biosynthesi 84.5 13 0.00028 31.5 9.4 39 64-108 485-523 (559)
367 COG0050 TufB GTPases - transla 83.8 7.3 0.00016 30.5 7.1 81 32-121 102-202 (394)
368 PF00004 AAA: ATPase family as 83.5 3.8 8.2E-05 26.7 5.1 52 20-76 1-70 (132)
369 cd01873 RhoBTB RhoBTB subfamil 82.7 0.63 1.4E-05 33.6 1.1 19 17-35 2-20 (195)
370 COG5019 CDC3 Septin family pro 82.5 5.4 0.00012 31.8 6.2 36 64-99 163-200 (373)
371 COG0480 FusA Translation elong 82.3 3.3 7.2E-05 36.0 5.4 42 28-75 99-140 (697)
372 PF14331 ImcF-related_N: ImcF- 79.1 4.7 0.0001 30.7 4.8 91 30-122 27-133 (266)
373 PF03193 DUF258: Protein of un 78.8 5.7 0.00012 28.0 4.8 33 85-117 3-35 (161)
374 COG2179 Predicted hydrolase of 77.9 9.9 0.00021 27.0 5.7 46 41-100 45-90 (175)
375 PF13671 AAA_33: AAA domain; P 77.6 4.8 0.0001 26.8 4.1 12 20-31 2-13 (143)
376 COG3523 IcmF Type VI protein s 77.2 5.6 0.00012 36.6 5.3 19 13-31 120-139 (1188)
377 KOG3929|consensus 76.2 26 0.00057 27.0 7.9 14 63-76 190-203 (363)
378 PF00350 Dynamin_N: Dynamin fa 76.0 9 0.00019 26.2 5.2 39 30-73 130-168 (168)
379 KOG2485|consensus 75.9 3.6 7.8E-05 32.2 3.3 55 64-119 74-130 (335)
380 COG0523 Putative GTPases (G3E 75.0 17 0.00036 28.7 6.9 44 67-113 149-194 (323)
381 TIGR00064 ftsY signal recognit 74.5 31 0.00068 26.3 8.2 72 29-114 191-262 (272)
382 COG1660 Predicted P-loop-conta 73.2 14 0.0003 28.3 5.8 27 32-58 54-80 (286)
383 COG1419 FlhF Flagellar GTP-bin 73.0 4.1 9E-05 33.0 3.1 14 18-31 204-217 (407)
384 cd01132 F1_ATPase_alpha F1 ATP 71.7 35 0.00076 26.2 7.8 54 19-76 71-138 (274)
385 COG3640 CooC CO dehydrogenase 71.2 43 0.00092 25.4 8.1 58 28-96 155-212 (255)
386 PF13479 AAA_24: AAA domain 71.0 13 0.00029 27.0 5.3 14 18-31 4-17 (213)
387 COG0012 Predicted GTPase, prob 70.0 14 0.00031 29.6 5.5 41 64-104 207-248 (372)
388 PRK14723 flhF flagellar biosyn 69.9 40 0.00087 29.9 8.6 42 67-114 327-369 (767)
389 COG0563 Adk Adenylate kinase a 69.7 2.6 5.6E-05 30.1 1.2 13 19-31 2-14 (178)
390 PRK09435 membrane ATPase/prote 69.2 33 0.00073 27.1 7.4 40 17-56 56-112 (332)
391 TIGR01425 SRP54_euk signal rec 68.2 44 0.00095 27.5 8.1 14 18-31 101-114 (429)
392 TIGR00064 ftsY signal recognit 68.0 7.9 0.00017 29.6 3.6 14 18-31 73-86 (272)
393 COG1908 FrhD Coenzyme F420-red 68.0 16 0.00036 24.5 4.6 61 65-125 56-127 (132)
394 COG0552 FtsY Signal recognitio 67.9 34 0.00073 27.2 7.1 41 67-113 288-328 (340)
395 PF08438 MMR_HSR1_C: GTPase of 66.0 8.8 0.00019 25.2 3.1 31 69-103 1-32 (109)
396 PRK10867 signal recognition pa 65.2 60 0.0013 26.7 8.4 14 18-31 101-114 (433)
397 KOG2655|consensus 64.7 33 0.00072 27.5 6.6 40 64-103 159-200 (366)
398 KOG0460|consensus 63.8 36 0.00079 27.4 6.5 69 30-103 142-218 (449)
399 PRK05416 glmZ(sRNA)-inactivati 63.8 25 0.00055 27.1 5.7 52 19-75 8-96 (288)
400 cd03115 SRP The signal recogni 63.6 8.8 0.00019 26.7 3.0 12 20-31 3-14 (173)
401 PRK08118 topology modulation p 63.0 3.8 8.3E-05 28.7 1.0 13 19-31 3-15 (167)
402 PRK11889 flhF flagellar biosyn 62.8 16 0.00034 30.0 4.5 14 18-31 242-255 (436)
403 cd03112 CobW_like The function 62.4 16 0.00034 25.3 4.0 36 32-75 122-158 (158)
404 PF03668 ATP_bind_2: P-loop AT 61.4 34 0.00073 26.5 5.9 38 32-74 54-91 (284)
405 PRK14722 flhF flagellar biosyn 60.8 11 0.00024 30.3 3.3 13 19-31 139-151 (374)
406 PF01583 APS_kinase: Adenylyls 60.8 17 0.00036 25.5 3.9 12 20-31 5-16 (156)
407 PF04665 Pox_A32: Poxvirus A32 60.7 9.2 0.0002 28.8 2.7 15 17-31 13-27 (241)
408 PF02492 cobW: CobW/HypB/UreG, 60.6 16 0.00034 25.8 3.9 39 31-77 116-155 (178)
409 PRK07261 topology modulation p 59.7 4.7 0.0001 28.4 1.0 13 19-31 2-14 (171)
410 KOG1534|consensus 59.5 25 0.00054 26.4 4.7 15 64-78 165-179 (273)
411 PRK08727 hypothetical protein; 59.1 28 0.00061 25.7 5.1 13 19-31 43-55 (233)
412 PF05621 TniB: Bacterial TniB 58.3 16 0.00036 28.4 3.8 14 18-31 62-75 (302)
413 cd04170 EF-G_bact Elongation f 58.0 10 0.00022 28.6 2.7 26 95-120 241-266 (268)
414 PF03215 Rad17: Rad17 cell cyc 57.7 84 0.0018 26.5 8.1 53 65-117 167-227 (519)
415 PF01268 FTHFS: Formate--tetra 57.1 11 0.00025 31.8 2.9 69 43-119 356-427 (557)
416 COG0541 Ffh Signal recognition 57.0 1.1E+02 0.0023 25.4 8.3 89 17-117 100-206 (451)
417 PRK13695 putative NTPase; Prov 57.0 63 0.0014 22.4 8.1 46 64-119 127-172 (174)
418 COG5008 PilU Tfp pilus assembl 56.0 97 0.0021 24.3 9.0 66 47-122 186-251 (375)
419 PRK06217 hypothetical protein; 56.0 5.8 0.00013 28.0 1.0 14 18-31 2-15 (183)
420 TIGR01663 PNK-3'Pase polynucle 55.4 99 0.0022 26.2 8.2 88 19-118 371-468 (526)
421 PF13207 AAA_17: AAA domain; P 55.0 5.3 0.00012 25.8 0.6 13 19-31 1-13 (121)
422 PRK14531 adenylate kinase; Pro 54.9 6 0.00013 28.0 0.9 15 17-31 2-16 (183)
423 cd00477 FTHFS Formyltetrahydro 54.6 87 0.0019 26.4 7.5 71 43-120 341-413 (524)
424 cd00756 MoaE MoaE family. Memb 53.6 43 0.00093 22.4 4.8 36 22-57 71-108 (124)
425 COG1806 Uncharacterized protei 53.4 24 0.00051 27.1 3.8 34 84-120 234-267 (273)
426 PF01935 DUF87: Domain of unkn 53.1 9.8 0.00021 27.8 1.8 26 16-41 22-63 (229)
427 PF12846 AAA_10: AAA-like doma 52.9 11 0.00024 28.3 2.1 21 19-39 3-38 (304)
428 cd02038 FleN-like FleN is a me 52.7 62 0.0013 21.7 5.6 42 30-75 68-109 (139)
429 PRK13507 formate--tetrahydrofo 52.4 1.2E+02 0.0025 26.1 8.0 69 44-120 387-458 (587)
430 PF05729 NACHT: NACHT domain 52.1 7.3 0.00016 26.3 1.0 12 20-31 3-14 (166)
431 PRK06620 hypothetical protein; 52.1 41 0.00088 24.6 4.9 14 18-31 45-58 (214)
432 PRK00771 signal recognition pa 51.9 19 0.00042 29.6 3.5 15 17-31 95-109 (437)
433 TIGR00959 ffh signal recogniti 51.7 1.4E+02 0.0029 24.6 8.4 14 18-31 100-113 (428)
434 PRK13343 F0F1 ATP synthase sub 51.6 74 0.0016 26.8 6.8 54 19-76 164-231 (502)
435 cd01133 F1-ATPase_beta F1 ATP 51.6 90 0.0019 24.0 6.8 54 19-76 71-139 (274)
436 COG4108 PrfC Peptide chain rel 51.2 73 0.0016 26.6 6.5 43 28-77 104-147 (528)
437 KOG0459|consensus 51.0 28 0.00062 28.5 4.1 88 22-113 174-279 (501)
438 PHA00729 NTP-binding motif con 50.3 9 0.0002 28.5 1.2 14 18-31 18-31 (226)
439 PLN02390 molybdopterin synthas 50.0 48 0.001 21.8 4.5 36 22-57 60-97 (111)
440 PRK04195 replication factor C 49.8 1.2E+02 0.0026 25.2 7.8 58 18-75 40-109 (482)
441 PRK14956 DNA polymerase III su 49.7 86 0.0019 26.3 6.9 12 20-31 43-54 (484)
442 PRK07165 F0F1 ATP synthase sub 49.6 79 0.0017 26.6 6.6 69 19-91 145-227 (507)
443 TIGR01618 phage_P_loop phage n 49.4 29 0.00064 25.7 3.8 15 17-31 12-26 (220)
444 PRK08903 DnaA regulatory inact 49.4 47 0.001 24.1 5.0 13 19-31 44-56 (227)
445 smart00382 AAA ATPases associa 49.3 8.8 0.00019 24.5 1.0 13 19-31 4-16 (148)
446 PRK05339 PEP synthetase regula 49.0 36 0.00078 26.1 4.3 36 83-121 229-264 (269)
447 COG4639 Predicted kinase [Gene 48.4 89 0.0019 22.2 5.8 12 20-31 5-16 (168)
448 PF07728 AAA_5: AAA domain (dy 48.0 7.8 0.00017 25.8 0.6 13 19-31 1-13 (139)
449 COG4598 HisP ABC-type histidin 48.0 29 0.00064 25.4 3.5 21 99-119 179-199 (256)
450 PRK09601 GTP-binding protein Y 47.9 30 0.00066 27.7 3.9 43 63-105 199-242 (364)
451 PF00006 ATP-synt_ab: ATP synt 47.8 45 0.00098 24.6 4.6 52 19-76 17-82 (215)
452 PF03969 AFG1_ATPase: AFG1-lik 47.7 51 0.0011 26.4 5.2 15 17-31 62-76 (362)
453 PRK09281 F0F1 ATP synthase sub 47.4 78 0.0017 26.6 6.4 54 19-76 164-231 (502)
454 PF00910 RNA_helicase: RNA hel 47.4 7.1 0.00015 25.1 0.3 12 20-31 1-12 (107)
455 PF13521 AAA_28: AAA domain; P 47.2 6.2 0.00013 27.2 -0.0 13 19-31 1-13 (163)
456 PRK08181 transposase; Validate 47.2 37 0.0008 26.0 4.2 13 19-31 108-120 (269)
457 PRK12723 flagellar biosynthesi 47.1 25 0.00054 28.4 3.3 14 18-31 175-188 (388)
458 PRK14530 adenylate kinase; Pro 46.8 9.8 0.00021 27.6 1.0 13 19-31 5-17 (215)
459 COG2759 MIS1 Formyltetrahydrof 46.8 1.1E+02 0.0024 25.6 6.8 72 43-121 354-427 (554)
460 PRK14532 adenylate kinase; Pro 46.7 10 0.00022 26.7 1.1 13 19-31 2-14 (188)
461 TIGR03596 GTPase_YlqF ribosome 46.7 11 0.00023 28.8 1.2 16 16-31 117-132 (276)
462 PRK03839 putative kinase; Prov 46.2 10 0.00022 26.6 1.0 13 19-31 2-14 (180)
463 COG4963 CpaE Flp pilus assembl 45.7 1.4E+02 0.003 24.1 7.2 45 30-77 241-285 (366)
464 cd00009 AAA The AAA+ (ATPases 45.4 10 0.00022 24.6 0.8 14 18-31 20-33 (151)
465 PRK09563 rbgA GTPase YlqF; Rev 45.3 11 0.00025 28.8 1.2 16 16-31 120-135 (287)
466 KOG3859|consensus 45.3 38 0.00082 26.5 3.9 18 14-31 39-56 (406)
467 TIGR01351 adk adenylate kinase 45.2 8.9 0.00019 27.8 0.5 13 19-31 1-13 (210)
468 PRK14738 gmk guanylate kinase; 45.0 14 0.0003 26.8 1.5 16 16-31 12-27 (206)
469 TIGR00962 atpA proton transloc 44.7 1E+02 0.0022 26.0 6.6 54 19-76 163-230 (501)
470 cd04169 RF3 RF3 subfamily. Pe 44.7 19 0.00041 27.3 2.3 26 95-120 240-265 (267)
471 PTZ00088 adenylate kinase 1; P 44.7 11 0.00024 28.0 1.0 14 18-31 7-20 (229)
472 PLN00020 ribulose bisphosphate 43.9 39 0.00084 27.5 3.9 60 14-75 145-223 (413)
473 cd01428 ADK Adenylate kinase ( 43.8 9.6 0.00021 26.8 0.5 13 19-31 1-13 (194)
474 PRK02496 adk adenylate kinase; 43.8 13 0.00028 26.1 1.2 14 18-31 2-15 (184)
475 PRK09601 GTP-binding protein Y 43.5 11 0.00024 30.2 0.8 14 18-31 3-16 (364)
476 PRK09602 translation-associate 43.2 12 0.00026 30.3 1.0 14 18-31 2-15 (396)
477 PRK06526 transposase; Provisio 43.2 43 0.00092 25.3 3.9 13 19-31 100-112 (254)
478 CHL00072 chlL photochlorophyll 43.0 21 0.00046 27.4 2.3 22 19-40 2-38 (290)
479 PF08433 KTI12: Chromatin asso 43.0 1.5E+02 0.0032 22.6 7.7 52 64-115 98-169 (270)
480 cd02019 NK Nucleoside/nucleoti 43.0 12 0.00026 21.9 0.8 12 20-31 2-13 (69)
481 PRK13949 shikimate kinase; Pro 42.6 13 0.00028 26.1 1.0 13 19-31 3-15 (169)
482 PF13173 AAA_14: AAA domain 42.5 75 0.0016 20.8 4.7 24 20-43 5-42 (128)
483 cd01886 EF-G Elongation factor 42.3 22 0.00048 27.0 2.3 26 95-120 243-268 (270)
484 PRK08116 hypothetical protein; 42.0 1.5E+02 0.0033 22.5 7.9 13 19-31 116-128 (268)
485 PF10551 MULE: MULE transposas 41.8 60 0.0013 19.7 4.0 37 21-57 16-52 (93)
486 PF10236 DAP3: Mitochondrial r 41.7 38 0.00082 26.4 3.5 19 13-31 19-37 (309)
487 PRK14949 DNA polymerase III su 41.7 1.7E+02 0.0037 26.8 7.7 12 20-31 41-52 (944)
488 PF14784 ECIST_Cterm: C-termin 41.4 58 0.0013 22.0 3.9 37 32-68 87-123 (126)
489 PLN02759 Formate--tetrahydrofo 41.3 2.4E+02 0.0052 24.5 8.3 69 44-120 436-508 (637)
490 KOG3079|consensus 41.2 18 0.0004 26.2 1.6 12 20-31 11-22 (195)
491 PF03709 OKR_DC_1_N: Orn/Lys/A 40.8 1E+02 0.0022 20.0 5.1 40 30-73 38-77 (115)
492 PF01695 IstB_IS21: IstB-like 40.7 18 0.00038 25.7 1.5 14 18-31 48-61 (178)
493 TIGR01359 UMP_CMP_kin_fam UMP- 40.6 13 0.00028 26.0 0.8 12 20-31 2-13 (183)
494 cd02034 CooC The accessory pro 40.5 69 0.0015 20.9 4.2 13 19-31 1-13 (116)
495 PRK05642 DNA replication initi 40.5 86 0.0019 23.1 5.2 14 18-31 46-59 (234)
496 PRK00279 adk adenylate kinase; 40.5 15 0.00032 26.7 1.0 13 19-31 2-14 (215)
497 PRK14528 adenylate kinase; Pro 40.3 15 0.00032 26.2 1.0 14 18-31 2-15 (186)
498 KOG0726|consensus 40.1 1.2E+02 0.0026 24.1 5.9 28 48-75 307-336 (440)
499 CHL00059 atpA ATP synthase CF1 40.0 71 0.0015 26.7 5.0 54 19-76 143-210 (485)
500 PF01591 6PF2K: 6-phosphofruct 39.9 72 0.0016 23.7 4.6 16 16-31 11-26 (222)
No 1
>KOG0078|consensus
Probab=99.94 E-value=2.1e-26 Score=164.52 Aligned_cols=113 Identities=30% Similarity=0.480 Sum_probs=106.4
Q ss_pred cCCCCcceEEEEEEECCCCCCeE---------------------------------------------------------
Q psy2600 9 LHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------------- 31 (158)
Q Consensus 9 ~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------------- 31 (158)
+..+.+++++|++++|+++|||+
T Consensus 4 ~~~~~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQerf~ti~~sYyr 83 (207)
T KOG0078|consen 4 MAKEDYDYLFKLLLIGDSGVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQERFRTITTAYYR 83 (207)
T ss_pred cccCCcceEEEEEEECCCCCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeCCeEEEEEEEEcccchhHHHHHHHHHh
Confidence 34458999999999999999999
Q ss_pred ----EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 32 ----VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 32 ----~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
+++|||+++..||+.+..|+..+.++.++. +|++|||||+|+...++++.+.++++|..+|+.|+||||++|.|
T Consensus 84 gA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~--v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSAk~~~N 161 (207)
T KOG0078|consen 84 GAMGILLVYDITNEKSFENIRNWIKNIDEHASDD--VVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSAKTNFN 161 (207)
T ss_pred hcCeeEEEEEccchHHHHHHHHHHHHHHhhCCCC--CcEEEeeccccccccccccHHHHHHHHHHhCCeEEEccccCCCC
Confidence 999999999999999999999999888765 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q psy2600 108 CWVNTRTPEINPLKYL 123 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~ 123 (158)
|.+.|..|++.+..+.
T Consensus 162 I~eaF~~La~~i~~k~ 177 (207)
T KOG0078|consen 162 IEEAFLSLARDILQKL 177 (207)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999998754
No 2
>KOG0084|consensus
Probab=99.94 E-value=2.9e-26 Score=162.02 Aligned_cols=113 Identities=28% Similarity=0.427 Sum_probs=106.6
Q ss_pred CCCcceEEEEEEECCCCCCeE-----------------------------------------------------------
Q psy2600 11 NDNYEIQLKVVLLGDPSCGKI----------------------------------------------------------- 31 (158)
Q Consensus 11 ~~~~~~~~ki~~~G~~~vgk~----------------------------------------------------------- 31 (158)
.++++|++|++++|+.+|||+
T Consensus 3 ~~~~dylFKiiliGds~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQERFrtit~syYR~a 82 (205)
T KOG0084|consen 3 NPEYDYLFKIILIGDSGVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQERFRTITSSYYRGA 82 (205)
T ss_pred CcccceEEEEEEECCCCcChhhhhhhhccCCcchhhcceeeeEEEEEEeeecceEEEEEeeeccccHHHhhhhHhhccCC
Confidence 468999999999999999999
Q ss_pred --EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe-EEEEeCCCCCCH
Q psy2600 32 --VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH-SFAVSARTGDNC 108 (158)
Q Consensus 32 --~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i 108 (158)
+|+|||+|+..||+.+..|+.++..+..++ +|.++||||||+...+.++.++++.++..++++ |+||||+++.||
T Consensus 83 hGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~--v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~~NV 160 (205)
T KOG0084|consen 83 HGIIFVYDITKQESFNNVKRWIQEIDRYASEN--VPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDSTNV 160 (205)
T ss_pred CeEEEEEEcccHHHhhhHHHHHHHhhhhccCC--CCeEEEeeccccHhheecCHHHHHHHHHhcCCcceeecccCCccCH
Confidence 999999999999999999999999888776 999999999999999999999999999999999 999999999999
Q ss_pred HHHHHHHHHHHHHhHhh
Q psy2600 109 WVNTRTPEINPLKYLQS 125 (158)
Q Consensus 109 ~~lf~~l~~~~~~~~~~ 125 (158)
++.|..+...+.++...
T Consensus 161 e~~F~~la~~lk~~~~~ 177 (205)
T KOG0084|consen 161 EDAFLTLAKELKQRKGL 177 (205)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999999887543
No 3
>KOG0093|consensus
Probab=99.93 E-value=1.1e-25 Score=152.43 Aligned_cols=117 Identities=29% Similarity=0.424 Sum_probs=108.6
Q ss_pred cCCCCcceEEEEEEECCCCCCeE---------------------------------------------------------
Q psy2600 9 LHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------------- 31 (158)
Q Consensus 9 ~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------------- 31 (158)
..+.+++|.+|+.++|+..+||+
T Consensus 13 s~dqnFDymfKlliiGnssvGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~~kRiklQiwDTagqEryrtiTTayyR 92 (193)
T KOG0093|consen 13 SIDQNFDYMFKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRSDKRIKLQIWDTAGQERYRTITTAYYR 92 (193)
T ss_pred cccccccceeeEEEEccCCccchhhhHHhhccccccceeeeeeeeEEEeEeeecccEEEEEEEecccchhhhHHHHHHhh
Confidence 34569999999999999999998
Q ss_pred ----EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 32 ----VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 32 ----~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
+|++||+++.+||..+..|.-.++.+.-.+ .|+|+|+||||+..++.++.+.++.+++++|.+|||+||+.|.|
T Consensus 93 gamgfiLmyDitNeeSf~svqdw~tqIktysw~n--aqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Nin 170 (193)
T KOG0093|consen 93 GAMGFILMYDITNEESFNSVQDWITQIKTYSWDN--AQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENIN 170 (193)
T ss_pred ccceEEEEEecCCHHHHHHHHHHHHHheeeeccC--ceEEEEecccCCccceeeeHHHHHHHHHHhChHHhhhccccccc
Confidence 999999999999999999999999777666 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhcc
Q psy2600 108 CWVNTRTPEINPLKYLQSNN 127 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~~~~~ 127 (158)
|+++|..++..+.+.+.++.
T Consensus 171 Vk~~Fe~lv~~Ic~kmsesl 190 (193)
T KOG0093|consen 171 VKQVFERLVDIICDKMSESL 190 (193)
T ss_pred HHHHHHHHHHHHHHHhhhhh
Confidence 99999999999988765543
No 4
>KOG0098|consensus
Probab=99.93 E-value=2.2e-25 Score=156.23 Aligned_cols=114 Identities=25% Similarity=0.399 Sum_probs=106.2
Q ss_pred CcceEEEEEEECCCCCCeE-------------------------------------------------------------
Q psy2600 13 NYEIQLKVVLLGDPSCGKI------------------------------------------------------------- 31 (158)
Q Consensus 13 ~~~~~~ki~~~G~~~vgk~------------------------------------------------------------- 31 (158)
.+++.+|++++|+.+|||+
T Consensus 2 ~~~~~fKyIiiGd~gVGKSclllrf~~krF~~~hd~TiGvefg~r~~~id~k~IKlqiwDtaGqe~frsv~~syYr~a~G 81 (216)
T KOG0098|consen 2 SYAYLFKYIIIGDTGVGKSCLLLRFTDKRFQPVHDLTIGVEFGARMVTIDGKQIKLQIWDTAGQESFRSVTRSYYRGAAG 81 (216)
T ss_pred CccceEEEEEECCCCccHHHHHHHHhccCccccccceeeeeeceeEEEEcCceEEEEEEecCCcHHHHHHHHHHhccCcc
Confidence 4789999999999999998
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++.++||..+..|+.+++++..++ +.++|+||||||...++++.++++.||+++|+.|+++||+++.||+|+
T Consensus 82 alLVydit~r~sF~hL~~wL~D~rq~~~~N--mvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~~VEEa 159 (216)
T KOG0098|consen 82 ALLVYDITRRESFNHLTSWLEDARQHSNEN--MVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAENVEEA 159 (216)
T ss_pred eEEEEEccchhhHHHHHHHHHHHHHhcCCC--cEEEEEcchhhhhccccccHHHHHHHHHHcCceeehhhhhhhhhHHHH
Confidence 999999999999999999999999887666 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhhccc
Q psy2600 112 TRTPEINPLKYLQSNNE 128 (158)
Q Consensus 112 f~~l~~~~~~~~~~~~~ 128 (158)
|......+....+....
T Consensus 160 F~nta~~Iy~~~q~g~~ 176 (216)
T KOG0098|consen 160 FINTAKEIYRKIQDGVF 176 (216)
T ss_pred HHHHHHHHHHHHHhccc
Confidence 99999999887655444
No 5
>KOG0087|consensus
Probab=99.92 E-value=1.2e-24 Score=155.21 Aligned_cols=112 Identities=28% Similarity=0.435 Sum_probs=105.0
Q ss_pred CCCcceEEEEEEECCCCCCeE-----------------------------------------------------------
Q psy2600 11 NDNYEIQLKVVLLGDPSCGKI----------------------------------------------------------- 31 (158)
Q Consensus 11 ~~~~~~~~ki~~~G~~~vgk~----------------------------------------------------------- 31 (158)
+.+++|.+|++++|+++|||+
T Consensus 8 ~~~~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd~k~vkaqIWDTAGQERyrAitSaYYrgA 87 (222)
T KOG0087|consen 8 SEEYDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVDGKTVKAQIWDTAGQERYRAITSAYYRGA 87 (222)
T ss_pred ccccceEEEEEEeCCCccchhHHHHHhcccccCcccccceeEEEEeeceeecCcEEEEeeecccchhhhccccchhhccc
Confidence 368999999999999999998
Q ss_pred --EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 32 --VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 --~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++|||+|...+|+.+..|+.+++.+...+ +++++||||+||.+.+.+..+++..+++..++.|+|+||.++.||+
T Consensus 88 vGAllVYDITr~~Tfenv~rWL~ELRdhad~n--ivimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl~~tNVe 165 (222)
T KOG0087|consen 88 VGALLVYDITRRQTFENVERWLKELRDHADSN--IVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSALDATNVE 165 (222)
T ss_pred ceeEEEEechhHHHHHHHHHHHHHHHhcCCCC--eEEEEeecchhhhhccccchhhhHhHHHhcCceEEEecccccccHH
Confidence 999999999999999999999999777666 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHh
Q psy2600 110 VNTRTPEINPLKYLQ 124 (158)
Q Consensus 110 ~lf~~l~~~~~~~~~ 124 (158)
++|..++..+.....
T Consensus 166 ~aF~~~l~~I~~~vs 180 (222)
T KOG0087|consen 166 KAFERVLTEIYKIVS 180 (222)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998877643
No 6
>KOG0088|consensus
Probab=99.92 E-value=2.1e-24 Score=147.95 Aligned_cols=115 Identities=25% Similarity=0.330 Sum_probs=105.1
Q ss_pred cccCCCCcceEEEEEEECCCCCCeE-------------------------------------------------------
Q psy2600 7 LNLHNDNYEIQLKVVLLGDPSCGKI------------------------------------------------------- 31 (158)
Q Consensus 7 ~~~~~~~~~~~~ki~~~G~~~vgk~------------------------------------------------------- 31 (158)
...+.....+.||++++|..+|||+
T Consensus 3 ~~~~~~g~s~~FK~VLLGEGCVGKtSLVLRy~EnkFn~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPIY 82 (218)
T KOG0088|consen 3 LETNVDGKSFKFKIVLLGEGCVGKTSLVLRYVENKFNCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPIY 82 (218)
T ss_pred ccccccCCceeeEEEEEcCCccchhHHHHHHHHhhcchhhHHHHHHHHhhcccccccceeeeeeeeccchHhhhccCceE
Confidence 3455667889999999999999998
Q ss_pred ------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCC
Q psy2600 32 ------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (158)
+++|||+||++||+...+|+.+++...... +-+++||||+||..++.++.++++.+++.-|..|+++||+.+
T Consensus 83 YRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGne--i~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~N 160 (218)
T KOG0088|consen 83 YRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNE--IELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKDN 160 (218)
T ss_pred EeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCe--eEEEEecCcccHHHhhhhhHHHHHHHHHhhchhheecccccc
Confidence 999999999999999999999999655554 899999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhH
Q psy2600 106 DNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~~ 123 (158)
.||.++|..+.....+..
T Consensus 161 ~Gi~elFe~Lt~~MiE~~ 178 (218)
T KOG0088|consen 161 VGISELFESLTAKMIEHS 178 (218)
T ss_pred cCHHHHHHHHHHHHHHHh
Confidence 999999999998777654
No 7
>KOG0092|consensus
Probab=99.92 E-value=2.3e-24 Score=151.83 Aligned_cols=92 Identities=29% Similarity=0.348 Sum_probs=85.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||+|+.+||..+..|+.++.+..+.+ +-+.|||||+||...+.+..+++..+++..|+.|||+||+++.||+++
T Consensus 81 AivvYDit~~~SF~~aK~WvkeL~~~~~~~--~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~Nv~~i 158 (200)
T KOG0092|consen 81 AIVVYDITDEESFEKAKNWVKELQRQASPN--IVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGENVNEI 158 (200)
T ss_pred EEEEEecccHHHHHHHHHHHHHHHhhCCCC--eEEEEecchhhhhhcccccHHHHHHHHHhcCCEEEEEecccccCHHHH
Confidence 999999999999999999999999777655 889999999999988999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhh
Q psy2600 112 TRTPEINPLKYLQS 125 (158)
Q Consensus 112 f~~l~~~~~~~~~~ 125 (158)
|..|.+.++.....
T Consensus 159 f~~Ia~~lp~~~~~ 172 (200)
T KOG0092|consen 159 FQAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHHhccCcccc
Confidence 99999999876433
No 8
>KOG0091|consensus
Probab=99.92 E-value=1.6e-23 Score=144.19 Aligned_cols=114 Identities=28% Similarity=0.428 Sum_probs=103.3
Q ss_pred CCcceEEEEEEECCCCCCeE------------------------------------------------------------
Q psy2600 12 DNYEIQLKVVLLGDPSCGKI------------------------------------------------------------ 31 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~vgk~------------------------------------------------------------ 31 (158)
+-+.|+++++++|+..|||+
T Consensus 3 pif~yqfrlivigdstvgkssll~~ft~gkfaelsdptvgvdffarlie~~pg~riklqlwdtagqerfrsitksyyrns 82 (213)
T KOG0091|consen 3 PIFHYQFRLIVIGDSTVGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRPGYRIKLQLWDTAGQERFRSITKSYYRNS 82 (213)
T ss_pred cceEEEEEEEEEcCCcccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCCCcEEEEEEeeccchHHHHHHHHHHhhcc
Confidence 46789999999999999998
Q ss_pred --EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 32 --VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 --~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++|||+++++||+.+.+|+.+...+...-..+-+.+||.|+||...++++.++++.+++++|..|+||||++|.||+
T Consensus 83 vgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g~NVe 162 (213)
T KOG0091|consen 83 VGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNGCNVE 162 (213)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhhhccccHHHHHHHHHhcCceEEEecccCCCcHH
Confidence 999999999999999999999998555411126789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhh
Q psy2600 110 VNTRTPEINPLKYLQS 125 (158)
Q Consensus 110 ~lf~~l~~~~~~~~~~ 125 (158)
+.|+.+.+.+......
T Consensus 163 EAF~mlaqeIf~~i~q 178 (213)
T KOG0091|consen 163 EAFDMLAQEIFQAIQQ 178 (213)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999887654
No 9
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.91 E-value=1.1e-23 Score=152.14 Aligned_cols=90 Identities=23% Similarity=0.232 Sum_probs=81.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.||+.+..|+.++....+ . +|++|||||+|+...+.+..++++.+++.+++.|++|||++|.||+++
T Consensus 82 illVfD~t~~~Sf~~~~~w~~~i~~~~~-~--~piilVGNK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~g~~V~~~ 158 (189)
T cd04121 82 IILVYDITNRWSFDGIDRWIKEIDEHAP-G--VPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNITES 158 (189)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCC-C--CCEEEEEECccchhccCCCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 9999999999999999999999986543 3 999999999999877778888999999999999999999999999999
Q ss_pred HHHHHHHHHHhHh
Q psy2600 112 TRTPEINPLKYLQ 124 (158)
Q Consensus 112 f~~l~~~~~~~~~ 124 (158)
|+++++.+..+..
T Consensus 159 F~~l~~~i~~~~~ 171 (189)
T cd04121 159 FTELARIVLMRHG 171 (189)
T ss_pred HHHHHHHHHHhcC
Confidence 9999998876544
No 10
>KOG0086|consensus
Probab=99.91 E-value=1.7e-23 Score=142.79 Aligned_cols=130 Identities=25% Similarity=0.339 Sum_probs=115.5
Q ss_pred CCCcceEEEEEEECCCCCCeE-----------------------------------------------------------
Q psy2600 11 NDNYEIQLKVVLLGDPSCGKI----------------------------------------------------------- 31 (158)
Q Consensus 11 ~~~~~~~~ki~~~G~~~vgk~----------------------------------------------------------- 31 (158)
.+.|||++|++++|.++.||+
T Consensus 3 sEtYDyLfKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGveFgSrIinVGgK~vKLQIWDTAGQErFRSVtRsYYRGA 82 (214)
T KOG0086|consen 3 SETYDYLFKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGVEFGSRIVNVGGKTVKLQIWDTAGQERFRSVTRSYYRGA 82 (214)
T ss_pred chhhhhhheeEEeccCCCChhHHHHHHHHhhhcccccceeeeeecceeeeecCcEEEEEEeecccHHHHHHHHHHHhccc
Confidence 458999999999999999998
Q ss_pred --EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 32 --VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 --~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++|||+++++||+.+.+|+..++...+.+ +-++++|||.||...++++..++..+++...+.+.|+||++|.||+
T Consensus 83 AGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~n--IvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNVE 160 (214)
T KOG0086|consen 83 AGALLVYDITSRDSFNALTNWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENVE 160 (214)
T ss_pred cceEEEEeccchhhHHHHHHHHHHHHhhCCCc--EEEEEeCChhhcChhhhhhHHHHHhhhcccceeeeeecccccccHH
Confidence 999999999999999999999999777766 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhccccccccccccccccc
Q psy2600 110 VNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTF 142 (158)
Q Consensus 110 ~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (158)
|.|-..++.+..+.+...-.+-...+|.+.|+.
T Consensus 161 EaFl~c~~tIl~kIE~GElDPer~gsGIQYGda 193 (214)
T KOG0086|consen 161 EAFLKCARTILNKIESGELDPERMGSGIQYGDA 193 (214)
T ss_pred HHHHHHHHHHHHHHhhcCCCHHHcccccccchh
Confidence 999999999988766544444446667666643
No 11
>KOG0081|consensus
Probab=99.90 E-value=5.2e-24 Score=146.13 Aligned_cols=94 Identities=30% Similarity=0.399 Sum_probs=85.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHh--hhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFH--LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~--~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
++++||+|+++||-++++|+..++ .+.. + +.++++|||+||+..++++..++.+++.++|++|||+||.+|.||+
T Consensus 94 FlLiFDlT~eqSFLnvrnWlSQL~~hAYcE-~--PDivlcGNK~DL~~~R~Vs~~qa~~La~kyglPYfETSA~tg~Nv~ 170 (219)
T KOG0081|consen 94 FLLIFDLTSEQSFLNVRNWLSQLQTHAYCE-N--PDIVLCGNKADLEDQRVVSEDQAAALADKYGLPYFETSACTGTNVE 170 (219)
T ss_pred ceEEEeccchHHHHHHHHHHHHHHHhhccC-C--CCEEEEcCccchhhhhhhhHHHHHHHHHHhCCCeeeeccccCcCHH
Confidence 999999999999999999999998 3433 3 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHhhccc
Q psy2600 110 VNTRTPEINPLKYLQSNNE 128 (158)
Q Consensus 110 ~lf~~l~~~~~~~~~~~~~ 128 (158)
+..+.++..+.++.+.-.+
T Consensus 171 kave~LldlvM~Rie~~v~ 189 (219)
T KOG0081|consen 171 KAVELLLDLVMKRIEQCVE 189 (219)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 9999999999988765443
No 12
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.89 E-value=5.3e-22 Score=144.67 Aligned_cols=92 Identities=26% Similarity=0.335 Sum_probs=81.0
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh-CCeEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL-HLHSFAVSARTGDN 107 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~ 107 (158)
++++|+|||+++++||+.+..|+..+.+..... +|+++||||+|+...+.+...+++++++.+ ++.|++|||++|.|
T Consensus 73 ad~iIlVfDvtd~~Sf~~l~~w~~~i~~~~~~~--~piilVgNK~DL~~~~~v~~~~~~~~a~~~~~~~~~etSAktg~g 150 (202)
T cd04120 73 AKGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFN 150 (202)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHHHHHHHHhcCCCEEEEecCCCCCC
Confidence 456999999999999999999999888665444 999999999999877788888888998875 78899999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2600 108 CWVNTRTPEINPLKY 122 (158)
Q Consensus 108 i~~lf~~l~~~~~~~ 122 (158)
|+++|.++++.+...
T Consensus 151 V~e~F~~l~~~~~~~ 165 (202)
T cd04120 151 VDEIFLKLVDDILKK 165 (202)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999988654
No 13
>KOG0094|consensus
Probab=99.88 E-value=3e-22 Score=141.56 Aligned_cols=90 Identities=26% Similarity=0.386 Sum_probs=82.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++|.+||++..+|++.+...+ .++ +-++|||||.||..++++..++++..|+.++..|+++||+.|.||.+
T Consensus 98 aviVyDit~~~Sfe~t~kWi~dv~~e~gs~~--viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g~NVk~ 175 (221)
T KOG0094|consen 98 AVIVYDITDRNSFENTSKWIEDVRRERGSDD--VIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAGENVKQ 175 (221)
T ss_pred EEEEEeccccchHHHHHHHHHHHHhccCCCc--eEEEEEcccccccchhhhhHHHHHHHHHHhCcEEEEecccCCCCHHH
Confidence 999999999999999999999999544 334 88999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|..+...+....
T Consensus 176 lFrrIaa~l~~~~ 188 (221)
T KOG0094|consen 176 LFRRIAAALPGME 188 (221)
T ss_pred HHHHHHHhccCcc
Confidence 9999999887753
No 14
>KOG0097|consensus
Probab=99.88 E-value=1.1e-21 Score=132.45 Aligned_cols=147 Identities=23% Similarity=0.292 Sum_probs=121.0
Q ss_pred cCCCCcceEEEEEEECCCCCCeE---------------------------------------------------------
Q psy2600 9 LHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------------- 31 (158)
Q Consensus 9 ~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------------- 31 (158)
....+|+|.+|.+++|+.+|||+
T Consensus 3 ~~pynysyifkyiiigdmgvgkscllhqftekkfmadcphtigvefgtriievsgqkiklqiwdtagqerfravtrsyyr 82 (215)
T KOG0097|consen 3 AAPYNYSYIFKYIIIGDMGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVSGQKIKLQIWDTAGQERFRAVTRSYYR 82 (215)
T ss_pred CCccchhheEEEEEEccccccHHHHHHHHHHHHHhhcCCcccceecceeEEEecCcEEEEEEeecccHHHHHHHHHHHhc
Confidence 34568999999999999999998
Q ss_pred ----EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 32 ----VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 32 ----~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
+++|||++.+..+..+..|+...+....++ .-+++++||.||..++.++.+++..+++..|+.|+++||++|.|
T Consensus 83 gaagalmvyditrrstynhlsswl~dar~ltnpn--t~i~lignkadle~qrdv~yeeak~faeengl~fle~saktg~n 160 (215)
T KOG0097|consen 83 GAAGALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAKTGQN 160 (215)
T ss_pred cccceeEEEEehhhhhhhhHHHHHhhhhccCCCc--eEEEEecchhhhhhcccCcHHHHHHHHhhcCeEEEEecccccCc
Confidence 999999999999999999999999776665 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccccccccccccccccccccccccCCCCCCCC
Q psy2600 108 CWVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTFYMAVKRLTTGPTVPR 157 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 157 (158)
|++.|-...+.+.+..+..+-......+|.+.........++...|+..|
T Consensus 161 vedafle~akkiyqniqdgsldlnaaesgvq~k~~~p~~~~l~se~~~~k 210 (215)
T KOG0097|consen 161 VEDAFLETAKKIYQNIQDGSLDLNAAESGVQHKPSQPSRTSLSSEATGAK 210 (215)
T ss_pred HHHHHHHHHHHHHHhhhcCcccccchhccCcCCCCCCCccccccCCCCcc
Confidence 99999999999988776655544445555544333333334444444433
No 15
>KOG0079|consensus
Probab=99.88 E-value=9.6e-23 Score=138.33 Aligned_cols=89 Identities=29% Similarity=0.404 Sum_probs=84.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||+|+.+||.....|+++++++.++ +|-++||||+|++..+.+..++++.|+...|+++||+||+++.|++.+
T Consensus 84 v~vVYDVTn~ESF~Nv~rWLeei~~ncds---v~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE~m 160 (198)
T KOG0079|consen 84 VIVVYDVTNGESFNNVKRWLEEIRNNCDS---VPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVEAM 160 (198)
T ss_pred EEEEEECcchhhhHhHHHHHHHHHhcCcc---ccceecccCCCCccceeeehHHHHHHHHhcCchheehhhhhcccchHH
Confidence 99999999999999999999999988875 899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhH
Q psy2600 112 TRTPEINPLKYL 123 (158)
Q Consensus 112 f~~l~~~~~~~~ 123 (158)
|..|.+.+....
T Consensus 161 F~cit~qvl~~k 172 (198)
T KOG0079|consen 161 FHCITKQVLQAK 172 (198)
T ss_pred HHHHHHHHHHHH
Confidence 999999887765
No 16
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.87 E-value=1.3e-21 Score=140.51 Aligned_cols=85 Identities=20% Similarity=0.276 Sum_probs=75.4
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCC------------CccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEH------------QRVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~ 97 (158)
+|+|||++++.||+.+ ..|+.++++..+. .|++|||||+||.. .+.++.++++++++.+++ .|
T Consensus 80 ~ilvyDit~~~Sf~~~~~~w~~~i~~~~~~---~piilVgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 156 (182)
T cd04172 80 VLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAATY 156 (182)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEeEChhhhcChhhHHHHHhcCCCCCCHHHHHHHHHHcCCCEE
Confidence 8999999999999997 7999999876543 89999999999853 345888999999999995 89
Q ss_pred EEEeCCCCCC-HHHHHHHHHHHH
Q psy2600 98 FAVSARTGDN-CWVNTRTPEINP 119 (158)
Q Consensus 98 ~~~Sa~~~~~-i~~lf~~l~~~~ 119 (158)
+||||++|.| |.++|..+++.+
T Consensus 157 ~E~SAk~~~n~v~~~F~~~~~~~ 179 (182)
T cd04172 157 IECSALQSENSVRDIFHVATLAC 179 (182)
T ss_pred EECCcCCCCCCHHHHHHHHHHHH
Confidence 9999999998 999999999854
No 17
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.87 E-value=1.2e-21 Score=139.95 Aligned_cols=86 Identities=16% Similarity=0.251 Sum_probs=75.6
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc----------cccHHHHHHHHHHhCC-eEEE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQR----------VVTLERHAKLAQSLHL-HSFA 99 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~----------~~~~~~~~~~~~~~~~-~~~~ 99 (158)
+|+|||++++.||+.+ ..|+.+++.... + +|+++||||+|+...+ .++.+++..+++.++. .|+|
T Consensus 76 ~ilvyd~~~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgnK~Dl~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~~E 152 (176)
T cd04133 76 FVLAFSLISRASYENVLKKWVPELRHYAP-N--VPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYIE 152 (176)
T ss_pred EEEEEEcCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEeChhhccChhhhhhccCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 9999999999999998 689999986543 3 9999999999996432 4778899999999997 5999
Q ss_pred EeCCCCCCHHHHHHHHHHHHH
Q psy2600 100 VSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 100 ~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
|||++|.||+++|+.+++.+.
T Consensus 153 ~SAk~~~nV~~~F~~~~~~~~ 173 (176)
T cd04133 153 CSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred CCCCcccCHHHHHHHHHHHHh
Confidence 999999999999999998763
No 18
>KOG0394|consensus
Probab=99.87 E-value=2.1e-21 Score=136.06 Aligned_cols=112 Identities=22% Similarity=0.336 Sum_probs=98.3
Q ss_pred CCcceEEEEEEECCCCCCeE------------------------------------------------------------
Q psy2600 12 DNYEIQLKVVLLGDPSCGKI------------------------------------------------------------ 31 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~vgk~------------------------------------------------------------ 31 (158)
..+.-.+||+++|++||||+
T Consensus 4 ~~K~~lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd~~~vtlQiWDTAGQERFqsLg~aFYRgaD 83 (210)
T KOG0394|consen 4 LRKRTLLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVDDRSVTLQIWDTAGQERFQSLGVAFYRGAD 83 (210)
T ss_pred cCcccceEEEEeCCCCccHHHHHHHHHHHHHHHHhccccchhheeeEEEEcCeEEEEEEEecccHHHhhhcccceecCCc
Confidence 35677899999999999998
Q ss_pred -EEEEEECCChhHHhhHHHHHHHHhhhcC-CC-CCcEEEEEEeCCCCCC--CccccHHHHHHHHHHhC-CeEEEEeCCCC
Q psy2600 32 -VIFMYDITSGQSFHSIPTWVDLFHLNRK-SS-TPTYVALVANKGDMEH--QRVVTLERHAKLAQSLH-LHSFAVSARTG 105 (158)
Q Consensus 32 -~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~-~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 105 (158)
+++|||++++.||+.+.+|.+++..+.. .. ...|+||+|||+|+.. .++++...++.|++..| ++|||+||+..
T Consensus 84 cCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnipyfEtSAK~~ 163 (210)
T KOG0394|consen 84 CCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIPYFETSAKEA 163 (210)
T ss_pred eEEEEeecCChhhhccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCCCccceeeHHHHHHHHHhcCCceeEEeccccc
Confidence 9999999999999999999999984333 21 1289999999999974 47899999999999876 89999999999
Q ss_pred CCHHHHHHHHHHHHHHhH
Q psy2600 106 DNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~~ 123 (158)
.||.+.|..+++......
T Consensus 164 ~NV~~AFe~ia~~aL~~E 181 (210)
T KOG0394|consen 164 TNVDEAFEEIARRALANE 181 (210)
T ss_pred ccHHHHHHHHHHHHHhcc
Confidence 999999999999888754
No 19
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.87 E-value=4.2e-21 Score=142.49 Aligned_cols=88 Identities=23% Similarity=0.263 Sum_probs=77.7
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCC------------CccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEH------------QRVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~ 97 (158)
+|+|||++++.||+.+ ..|+.++....+. .|+++||||+|+.. .+.+..++++.+++.+++ .|
T Consensus 88 vIlVyDit~~~Sf~~~~~~w~~~i~~~~~~---~piilVgNK~DL~~~~~~~~~l~~~~~~~Vs~~e~~~~a~~~~~~~~ 164 (232)
T cd04174 88 VLLCFDISRPETVDSALKKWKAEIMDYCPS---TRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAEVY 164 (232)
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccccccchhhhhccccCCcCCHHHHHHHHHHcCCCEE
Confidence 9999999999999985 7999999866543 89999999999863 256888899999999998 69
Q ss_pred EEEeCCCCC-CHHHHHHHHHHHHHHh
Q psy2600 98 FAVSARTGD-NCWVNTRTPEINPLKY 122 (158)
Q Consensus 98 ~~~Sa~~~~-~i~~lf~~l~~~~~~~ 122 (158)
+||||++|. ||+++|..+++.+.+.
T Consensus 165 ~EtSAktg~~~V~e~F~~~~~~~~~~ 190 (232)
T cd04174 165 LECSAFTSEKSIHSIFRSASLLCLNK 190 (232)
T ss_pred EEccCCcCCcCHHHHHHHHHHHHHHh
Confidence 999999997 8999999999988764
No 20
>KOG0080|consensus
Probab=99.87 E-value=7.4e-22 Score=135.68 Aligned_cols=111 Identities=27% Similarity=0.408 Sum_probs=102.1
Q ss_pred CCCcceEEEEEEECCCCCCeE-----------------------------------------------------------
Q psy2600 11 NDNYEIQLKVVLLGDPSCGKI----------------------------------------------------------- 31 (158)
Q Consensus 11 ~~~~~~~~ki~~~G~~~vgk~----------------------------------------------------------- 31 (158)
...+++++|++++|+.||||+
T Consensus 5 ss~~~~t~KiLlIGeSGVGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGqErFRtLTpSyyRga 84 (209)
T KOG0080|consen 5 SSGYDTTFKILLIGESGVGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQERFRTLTPSYYRGA 84 (209)
T ss_pred ccCcceeEEEEEEccCCccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEcCceEEEEEEeccchHhhhccCHhHhccC
Confidence 467899999999999999998
Q ss_pred --EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 32 --VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 --~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+|+|||+|.+++|..+..|+.++..|... .++-.++||||+|..+.+.++.+++..+|+++++-|+|+||++.+||.
T Consensus 85 qGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn-~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~~~V~ 163 (209)
T KOG0080|consen 85 QGIILVYDVTSRDTFVKLDIWLKELDLYSTN-PDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTRENVQ 163 (209)
T ss_pred ceeEEEEEccchhhHHhHHHHHHHHHhhcCC-ccHhHhhhcccccchhcccccHHHHHHHHHhhCcEEEEcchhhhccHH
Confidence 99999999999999999999999976643 237889999999998889999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2600 110 VNTRTPEINPLKY 122 (158)
Q Consensus 110 ~lf~~l~~~~~~~ 122 (158)
.+|+.++..+.+.
T Consensus 164 ~~FeelveKIi~t 176 (209)
T KOG0080|consen 164 CCFEELVEKIIET 176 (209)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999988764
No 21
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.87 E-value=1.2e-20 Score=138.40 Aligned_cols=117 Identities=26% Similarity=0.357 Sum_probs=91.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++.||+.+..|+.++.+... .. +|+++|+||+|+...+.+..++...+++.+++.|+++||++|.||.+
T Consensus 79 iilv~D~~~~~Sf~~l~~~~~~i~~~~~~~~--~~iilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~g~~v~e 156 (211)
T cd04111 79 VLLVFDITNRESFEHVHDWLEEARSHIQPHR--PVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGDNVEE 156 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEccccccccccCHHHHHHHHHHhCCEEEEEeCCCCCCHHH
Confidence 8999999999999999999999985432 23 88999999999987667778888999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhcccccccccccccc----ccccccccccC
Q psy2600 111 NTRTPEINPLKYLQSNNEYNFLSMVGFEA----GTFYMAVKRLT 150 (158)
Q Consensus 111 lf~~l~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~ 150 (158)
+|+.|++.+.+............+.+.+. +...+...|.+
T Consensus 157 ~f~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (211)
T cd04111 157 AFELLTQEIYERIKRGELCALDGWDGVKSGFPAGRAFSLEERSP 200 (211)
T ss_pred HHHHHHHHHHHHhhcCCCCccccccccccCCCcccccccCcccc
Confidence 99999998887755444334444444333 44444444443
No 22
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.87 E-value=5.7e-21 Score=134.58 Aligned_cols=88 Identities=26% Similarity=0.365 Sum_probs=78.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.||+.+..|+..+....... .|+++|+||+|+...+.+..+++..+++..++.++++||++|.||.++
T Consensus 78 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~e~ 155 (166)
T cd04122 78 ALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENVEDA 155 (166)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCcCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 999999999999999999999987654444 899999999999877777788899999998999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|..+++.+.+
T Consensus 156 f~~l~~~~~~ 165 (166)
T cd04122 156 FLETAKKIYQ 165 (166)
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 23
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.86 E-value=5.2e-21 Score=136.04 Aligned_cols=89 Identities=26% Similarity=0.236 Sum_probs=78.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.||+.+..|...+.+.. ... +|+++|+||+|+...+.++.+++..+++.+++.|++|||++|.||++
T Consensus 77 ~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~--~piilvgNK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 154 (172)
T cd04141 77 FIICYSVTDRHSFQEASEFKKLITRVRLTED--IPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYIDD 154 (172)
T ss_pred EEEEEECCchhHHHHHHHHHHHHHHhcCCCC--CCEEEEEEChhhhhcCccCHHHHHHHHHHhCCEEEEEecCCCCCHHH
Confidence 999999999999999999988887542 223 99999999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|+++++.+...
T Consensus 155 ~f~~l~~~~~~~ 166 (172)
T cd04141 155 AFHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHHh
Confidence 999999887753
No 24
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.86 E-value=9.3e-21 Score=133.72 Aligned_cols=88 Identities=31% Similarity=0.367 Sum_probs=78.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++++|+.+..|+..+......+ .|+++|+||+|+...+.+..+++..+++.++.+++++||++|.|+.++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 156 (167)
T cd01867 79 IILVYDITDEKSFENIRNWMRNIEEHASED--VERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINVEEA 156 (167)
T ss_pred EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999998654444 899999999999876667777888899999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|+.+++.+..
T Consensus 157 ~~~i~~~~~~ 166 (167)
T cd01867 157 FFTLAKDIKK 166 (167)
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 25
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.86 E-value=4.4e-21 Score=137.28 Aligned_cols=86 Identities=23% Similarity=0.273 Sum_probs=75.2
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCC------------CccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEH------------QRVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~ 97 (158)
+|+|||+++++||+++ ..|+..+.+..+. .|+++||||+||.. .+.++.+++.++++.+++ .|
T Consensus 76 ~ilvfdit~~~Sf~~~~~~w~~~i~~~~~~---~~iilVgnK~DL~~~~~~~~~~~~~~~~~v~~~e~~~~a~~~~~~~~ 152 (178)
T cd04131 76 VLICFDISRPETLDSVLKKWRGEIQEFCPN---TKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEIY 152 (178)
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHHCCC---CCEEEEEEChhhhcChhHHHHHHhcCCCCCCHHHHHHHHHHhCCCEE
Confidence 9999999999999996 7999999876543 89999999999853 235788899999999996 79
Q ss_pred EEEeCCCCCC-HHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDN-CWVNTRTPEINPL 120 (158)
Q Consensus 98 ~~~Sa~~~~~-i~~lf~~l~~~~~ 120 (158)
+||||++|.| |+++|..+++...
T Consensus 153 ~E~SA~~~~~~v~~~F~~~~~~~~ 176 (178)
T cd04131 153 LECSAFTSEKSVRDIFHVATMACL 176 (178)
T ss_pred EECccCcCCcCHHHHHHHHHHHHh
Confidence 9999999995 9999999998543
No 26
>PLN03110 Rab GTPase; Provisional
Probab=99.86 E-value=2.2e-20 Score=137.42 Aligned_cols=113 Identities=27% Similarity=0.413 Sum_probs=100.1
Q ss_pred cCCCCcceEEEEEEECCCCCCeE---------------------------------------------------------
Q psy2600 9 LHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------------- 31 (158)
Q Consensus 9 ~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------------- 31 (158)
+.....++.+|++++|+.++||+
T Consensus 4 ~~~~~~~~~~Ki~ivG~~~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~ 83 (216)
T PLN03110 4 RVDHEYDYLFKIVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYR 83 (216)
T ss_pred CcccccCceeEEEEECCCCCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEECCEEEEEEEEECCCcHHHHHHHHHHhC
Confidence 33445678899999999999998
Q ss_pred ----EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 32 ----VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 32 ----~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
+|+|||++++.+|+.+..|+..+......+ +|+++|+||+|+...+.+..+.+..++..+++.++++||++|.|
T Consensus 84 ~~~~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~SA~~g~~ 161 (216)
T PLN03110 84 GAVGALLVYDITKRQTFDNVQRWLRELRDHADSN--IVIMMAGNKSDLNHLRSVAEEDGQALAEKEGLSFLETSALEATN 161 (216)
T ss_pred CCCEEEEEEECCChHHHHHHHHHHHHHHHhCCCC--CeEEEEEEChhcccccCCCHHHHHHHHHHcCCEEEEEeCCCCCC
Confidence 899999999999999999999998765444 99999999999987777778888899988899999999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q psy2600 108 CWVNTRTPEINPLKYL 123 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~ 123 (158)
++++|+.+++.+.+..
T Consensus 162 v~~lf~~l~~~i~~~~ 177 (216)
T PLN03110 162 VEKAFQTILLEIYHII 177 (216)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999987753
No 27
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.85 E-value=1.7e-20 Score=131.87 Aligned_cols=87 Identities=28% Similarity=0.311 Sum_probs=78.0
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++++|||+++++||+.+..|+.++....... +|+++|+||+|+...+.+..+++..+++.++.+|+++||++|.||+
T Consensus 74 ~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~--~~iilvgnK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~ 151 (161)
T cd04117 74 QGIFLVYDISSERSYQHIMKWVSDVDEYAPEG--VQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNIK 151 (161)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 44999999999999999999999988655433 9999999999998777777889999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 110 VNTRTPEIN 118 (158)
Q Consensus 110 ~lf~~l~~~ 118 (158)
++|.+|++.
T Consensus 152 ~~f~~l~~~ 160 (161)
T cd04117 152 ESFTRLTEL 160 (161)
T ss_pred HHHHHHHhh
Confidence 999999865
No 28
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.85 E-value=2.7e-20 Score=137.26 Aligned_cols=91 Identities=26% Similarity=0.226 Sum_probs=78.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC-------------------CccccHHHHHHHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH-------------------QRVVTLERHAKLAQS 92 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------------------~~~~~~~~~~~~~~~ 92 (158)
+|+|||+++++||+.+..|+..+.+..... +|+++||||+|+.. .+.+..+++..+++.
T Consensus 71 ~IlV~Dvt~~~Sf~~l~~~~~~l~~~~~~~--~piIlVgNK~DL~~~~~~~~~~~~~~~~~~~~~~r~v~~~e~~~~a~~ 148 (220)
T cd04126 71 VILTYDVSNVQSLEELEDRFLGLTDTANED--CLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYKR 148 (220)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccccccccccccccccccccCCHHHHHHHHHH
Confidence 999999999999999998888877543333 89999999999965 567888999999998
Q ss_pred hC--------------CeEEEEeCCCCCCHHHHHHHHHHHHHHhHh
Q psy2600 93 LH--------------LHSFAVSARTGDNCWVNTRTPEINPLKYLQ 124 (158)
Q Consensus 93 ~~--------------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (158)
.+ +.|+||||++|.||+++|..+++.+.....
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~E~SA~tg~~V~elf~~i~~~~~~~~~ 194 (220)
T cd04126 149 INKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLPLIL 194 (220)
T ss_pred hCccccccccccccccceEEEeeCCCCCCHHHHHHHHHHHHHHHHH
Confidence 76 679999999999999999999998876543
No 29
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.85 E-value=3.4e-20 Score=132.08 Aligned_cols=88 Identities=27% Similarity=0.394 Sum_probs=77.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||+++++||.++..|+..+..... .+ +|+++|+||+|+...+.+..+++..+++.++++++++||++|.|+++
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piiiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sak~~~~v~~ 167 (180)
T cd04127 90 FLLIFDLTNEQSFLNVRNWMSQLQTHAYCEN--PDIVLCGNKADLEDQRQVSEEQAKALADKYGIPYFETSAATGTNVEK 167 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEeCccchhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 8999999999999999999999985432 23 89999999999977667777888999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+|+.+++.+.+
T Consensus 168 l~~~l~~~~~~ 178 (180)
T cd04127 168 AVERLLDLVMK 178 (180)
T ss_pred HHHHHHHHHHh
Confidence 99999987764
No 30
>PLN03108 Rab family protein; Provisional
Probab=99.85 E-value=6.2e-20 Score=134.47 Aligned_cols=91 Identities=24% Similarity=0.391 Sum_probs=80.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++.+++.++++||+++.||.++
T Consensus 82 ~vlv~D~~~~~s~~~l~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~e~ 159 (210)
T PLN03108 82 ALLVYDITRRETFNHLASWLEDARQHANAN--MTIMLIGNKCDLAHRRAVSTEEGEQFAKEHGLIFMEASAKTAQNVEEA 159 (210)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 899999999999999999999887554433 999999999999877777888899999999999999999999999999
Q ss_pred HHHHHHHHHHhHh
Q psy2600 112 TRTPEINPLKYLQ 124 (158)
Q Consensus 112 f~~l~~~~~~~~~ 124 (158)
|.++++.+.+...
T Consensus 160 f~~l~~~~~~~~~ 172 (210)
T PLN03108 160 FIKTAAKIYKKIQ 172 (210)
T ss_pred HHHHHHHHHHHhh
Confidence 9999998876544
No 31
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.85 E-value=4.6e-20 Score=130.33 Aligned_cols=88 Identities=24% Similarity=0.365 Sum_probs=78.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.||+.+..|+..++...... +|+++|+||+|+.....+..++...++...+..++++||+++.||+++
T Consensus 80 il~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pvivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~~~ 157 (168)
T cd01866 80 ALLVYDITRRETFNHLTSWLEDARQHSNSN--MTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNVEEA 157 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999998654333 999999999999766667778888888888999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|..+++.+.+
T Consensus 158 ~~~~~~~~~~ 167 (168)
T cd01866 158 FINTAKEIYE 167 (168)
T ss_pred HHHHHHHHHh
Confidence 9999988753
No 32
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.85 E-value=2.5e-20 Score=134.67 Aligned_cols=88 Identities=19% Similarity=0.246 Sum_probs=75.1
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhC-CeE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLH-LHS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~ 97 (158)
+|+|||++++.||+.+. .|...+..... . +|+++||||+||... +.+..+++..+++.++ ..|
T Consensus 78 ~ilvydit~~~Sf~~~~~~w~~~i~~~~~-~--~piilvgNK~DL~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~~~ 154 (191)
T cd01875 78 FIICFSIASPSSYENVRHKWHPEVCHHCP-N--VPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAVKY 154 (191)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCC-C--CCEEEEEeChhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCcEE
Confidence 99999999999999996 69888875443 2 999999999999643 2356778899999988 589
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
++|||++|.||+++|..+++.+...
T Consensus 155 ~e~SAk~g~~v~e~f~~l~~~~~~~ 179 (191)
T cd01875 155 LECSALNQDGVKEVFAEAVRAVLNP 179 (191)
T ss_pred EEeCCCCCCCHHHHHHHHHHHHhcc
Confidence 9999999999999999999988653
No 33
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.84 E-value=4.5e-20 Score=129.86 Aligned_cols=88 Identities=25% Similarity=0.356 Sum_probs=78.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||+++++||+.+..|+..+....... .|+++|+||+|+.....+..+++..+++.++++++++||++|.|+.++
T Consensus 78 ii~v~d~~~~~s~~~l~~~~~~~~~~~~~~--~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~~ 155 (166)
T cd01869 78 IIIVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNVEQA 155 (166)
T ss_pred EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCcCHHHH
Confidence 999999999999999999999998665333 899999999999766667778888999989999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|..+++.+.+
T Consensus 156 ~~~i~~~~~~ 165 (166)
T cd01869 156 FMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHh
Confidence 9999987753
No 34
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.84 E-value=4.8e-20 Score=129.01 Aligned_cols=87 Identities=25% Similarity=0.447 Sum_probs=80.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||+++++||+.+..|+..+....... +|+++||||+|+...+.++.++++.+++.++..|+++||+++.||.++
T Consensus 75 ~ii~fd~~~~~S~~~~~~~~~~i~~~~~~~--~~iivvg~K~D~~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 152 (162)
T PF00071_consen 75 IIIVFDVTDEESFENLKKWLEEIQKYKPED--IPIIVVGNKSDLSDEREVSVEEAQEFAKELGVPYFEVSAKNGENVKEI 152 (162)
T ss_dssp EEEEEETTBHHHHHTHHHHHHHHHHHSTTT--SEEEEEEETTTGGGGSSSCHHHHHHHHHHTTSEEEEEBTTTTTTHHHH
T ss_pred cccccccccccccccccccccccccccccc--ccceeeeccccccccccchhhHHHHHHHHhCCEEEEEECCCCCCHHHH
Confidence 999999999999999999999999777633 999999999999877788889999999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|..+++.+.
T Consensus 153 f~~~i~~i~ 161 (162)
T PF00071_consen 153 FQELIRKIL 161 (162)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 999998864
No 35
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.84 E-value=7.3e-20 Score=132.96 Aligned_cols=89 Identities=28% Similarity=0.349 Sum_probs=79.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.||+.+..|+..+...... .|+++|+||+|+.....+..+++..+++.++..|+++||++|.||+++
T Consensus 82 iilv~D~~~~~s~~~~~~~~~~i~~~~~~---~piivVgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~gi~~l 158 (199)
T cd04110 82 VIVVYDVTNGESFVNVKRWLQEIEQNCDD---VCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINVEEM 158 (199)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCcCHHHH
Confidence 89999999999999999999998865433 899999999999866666777888888888999999999999999999
Q ss_pred HHHHHHHHHHhH
Q psy2600 112 TRTPEINPLKYL 123 (158)
Q Consensus 112 f~~l~~~~~~~~ 123 (158)
|+++++.+....
T Consensus 159 f~~l~~~~~~~~ 170 (199)
T cd04110 159 FNCITELVLRAK 170 (199)
T ss_pred HHHHHHHHHHhh
Confidence 999999887654
No 36
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.84 E-value=6.2e-20 Score=129.24 Aligned_cols=87 Identities=33% Similarity=0.392 Sum_probs=77.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++++|+.+..|+..+....... +|+++|+||+|+...+.+..++...+++.++++++++||+++.|+.++
T Consensus 77 ~l~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 154 (165)
T cd01865 77 FILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINVKQV 154 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CCEEEEEECcccCcccccCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 899999999999999999999998665444 899999999999776666777888888888999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|+.+++.+.
T Consensus 155 ~~~l~~~~~ 163 (165)
T cd01865 155 FERLVDIIC 163 (165)
T ss_pred HHHHHHHHH
Confidence 999998764
No 37
>KOG0395|consensus
Probab=99.84 E-value=9.4e-20 Score=132.11 Aligned_cols=90 Identities=22% Similarity=0.153 Sum_probs=81.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhh-hcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHL-NRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++||+++++.||+.+..++..+.+ ..... +|+++||||+|+...+.+..+++..++..+++.|+|+||+.+.||++
T Consensus 78 F~lVysitd~~SF~~~~~l~~~I~r~~~~~~--~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v~~ 155 (196)
T KOG0395|consen 78 FLLVYSITDRSSFEEAKQLREQILRVKGRDD--VPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNVDE 155 (196)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCcCC--CCEEEEEEcccchhccccCHHHHHHHHHhcCCcEEEeeccCCcCHHH
Confidence 9999999999999999999999953 23333 89999999999998899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|..+++.+....
T Consensus 156 ~F~~L~r~~~~~~ 168 (196)
T KOG0395|consen 156 VFYELVREIRLPR 168 (196)
T ss_pred HHHHHHHHHHhhh
Confidence 9999999988743
No 38
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.84 E-value=4.6e-20 Score=131.56 Aligned_cols=86 Identities=21% Similarity=0.266 Sum_probs=73.4
Q ss_pred EEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhC-Ce
Q psy2600 31 IVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLH-LH 96 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~ 96 (158)
++|+|||+++++||+.+. .|+.++....+. +|+++|+||+|+... +.++.+++..+++..+ ..
T Consensus 75 ~~ilv~d~~~~~s~~~~~~~w~~~i~~~~~~---~piilvgnK~Dl~~~~~~~~~l~~~~~~~v~~~~~~~~a~~~~~~~ 151 (175)
T cd01874 75 VFLVCFSVVSPSSFENVKEKWVPEITHHCPK---TPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK 151 (175)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECHhhhhChhhHHHhhhccCCCcCHHHHHHHHHHhCCcE
Confidence 399999999999999996 599888765432 999999999998543 4567788888998887 68
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 97 SFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 97 ~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
|+++||++|.||+++|+.++++.
T Consensus 152 ~~e~SA~tg~~v~~~f~~~~~~~ 174 (175)
T cd01874 152 YVECSALTQKGLKNVFDEAILAA 174 (175)
T ss_pred EEEecCCCCCCHHHHHHHHHHHh
Confidence 99999999999999999998854
No 39
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.84 E-value=1e-19 Score=127.78 Aligned_cols=86 Identities=27% Similarity=0.376 Sum_probs=76.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+++..|+..+.+..... +|+++|+||+|+...+.+..++...+++..++.++++||++|.|++++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~pi~vv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 156 (165)
T cd01868 79 ALLVYDITKKQTFENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNVEEA 156 (165)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 899999999999999999999998665444 899999999999876667777888888888899999999999999999
Q ss_pred HHHHHHHH
Q psy2600 112 TRTPEINP 119 (158)
Q Consensus 112 f~~l~~~~ 119 (158)
|+.+++.+
T Consensus 157 ~~~l~~~i 164 (165)
T cd01868 157 FKQLLTEI 164 (165)
T ss_pred HHHHHHHh
Confidence 99998765
No 40
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.83 E-value=5.1e-20 Score=129.36 Aligned_cols=88 Identities=18% Similarity=0.249 Sum_probs=75.8
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCC--CCccccHHHHHHHHHHh-CCeEEEEeCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDME--HQRVVTLERHAKLAQSL-HLHSFAVSART 104 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~ 104 (158)
.+++++|||++++.||+.+..|+.++..... .+ +|+++||||+|+. ..+.+..++++.+++.. ++.|++|||++
T Consensus 66 ~~~~ilv~d~~~~~sf~~~~~~~~~i~~~~~~~~--~piilvgnK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~SAk~ 143 (158)
T cd04103 66 VDAVIFVFSLENEASFQTVYNLYHQLSSYRNISE--IPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATY 143 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEeeHHHhhhcCCcccCHHHHHHHHHHhCCCcEEEEecCC
Confidence 4679999999999999999999999986542 33 8999999999985 35677888888898876 48999999999
Q ss_pred CCCHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEIN 118 (158)
Q Consensus 105 ~~~i~~lf~~l~~~ 118 (158)
|.||+++|..+++.
T Consensus 144 ~~~i~~~f~~~~~~ 157 (158)
T cd04103 144 GLNVERVFQEAAQK 157 (158)
T ss_pred CCCHHHHHHHHHhh
Confidence 99999999999864
No 41
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.83 E-value=1.9e-19 Score=129.81 Aligned_cols=97 Identities=25% Similarity=0.228 Sum_probs=81.2
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCC-CCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKS-STPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
++++|+|||+++..||+.+..|+..+...... ...+|+++|+||+|+...+.+...++..+++.+++.|+++||++|.|
T Consensus 71 ad~~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SAk~~~~ 150 (190)
T cd04144 71 GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN 150 (190)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEecCCCCCC
Confidence 35699999999999999999999988754321 11289999999999976667777778888888899999999999999
Q ss_pred HHHHHHHHHHHHHHhHhh
Q psy2600 108 CWVNTRTPEINPLKYLQS 125 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~~~ 125 (158)
|+++|.++++.+.+....
T Consensus 151 v~~l~~~l~~~l~~~~~~ 168 (190)
T cd04144 151 VERAFYTLVRALRQQRQG 168 (190)
T ss_pred HHHHHHHHHHHHHHhhcc
Confidence 999999999988765443
No 42
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.83 E-value=2.9e-19 Score=128.44 Aligned_cols=92 Identities=23% Similarity=0.306 Sum_probs=81.8
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++++|||++++.+|+.+..|+.++....... +|+++|+||+|+.+.+.+..+.+..+++..++.++++||++|.|+.
T Consensus 74 d~iilv~d~~~~~s~~~i~~~~~~i~~~~~~~--~~~ivv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~evSa~~~~~i~ 151 (188)
T cd04125 74 HGYLLVYDVTDQESFENLKFWINEINRYAREN--VIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINVE 151 (188)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCCCcccccCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 45999999999999999999999998765444 8999999999998777777788888888889999999999999999
Q ss_pred HHHHHHHHHHHHhH
Q psy2600 110 VNTRTPEINPLKYL 123 (158)
Q Consensus 110 ~lf~~l~~~~~~~~ 123 (158)
++|..+++.+....
T Consensus 152 ~~f~~l~~~~~~~~ 165 (188)
T cd04125 152 EAFILLVKLIIKRL 165 (188)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987754
No 43
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.83 E-value=2.2e-19 Score=131.95 Aligned_cols=94 Identities=35% Similarity=0.502 Sum_probs=80.8
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCC-CCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKS-STPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
++++|+|||+++++||+.+..|+..+.+.... ...+|+++|+||+|+...+.+..++...+++.+++.++++||++|.|
T Consensus 74 ad~iilV~D~t~~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~~~~v~~~~~~~~~~~~~~~~~~iSAktg~g 153 (215)
T cd04109 74 AHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKTGDR 153 (215)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhccccCCCceEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEECCCCCC
Confidence 35599999999999999999999999865421 11278999999999986677788889999999999999999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2600 108 CWVNTRTPEINPLKY 122 (158)
Q Consensus 108 i~~lf~~l~~~~~~~ 122 (158)
|+++|+.+++.+...
T Consensus 154 v~~lf~~l~~~l~~~ 168 (215)
T cd04109 154 VNLLFQQLAAELLGV 168 (215)
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988753
No 44
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2.4e-19 Score=129.34 Aligned_cols=92 Identities=26% Similarity=0.363 Sum_probs=81.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++|+|||++++.+|+++..|+..+....... +|+++|+||+|+...+.+..++...+++.++.+|+++||++|.|++
T Consensus 75 d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~e~Sa~~~~~v~ 152 (191)
T cd04112 75 HALLLLYDITNKASFDNIRAWLTEIKEYAQED--VVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNVE 152 (191)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccchhccccCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 45999999999999999999999998765544 8999999999997666667778888998899999999999999999
Q ss_pred HHHHHHHHHHHHhH
Q psy2600 110 VNTRTPEINPLKYL 123 (158)
Q Consensus 110 ~lf~~l~~~~~~~~ 123 (158)
++|..+++.+.+..
T Consensus 153 ~l~~~l~~~~~~~~ 166 (191)
T cd04112 153 LAFTAVAKELKHRK 166 (191)
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999987763
No 45
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.82 E-value=2.4e-19 Score=126.22 Aligned_cols=87 Identities=24% Similarity=0.205 Sum_probs=73.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCC-CCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKS-STPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||+++..+|+.+..|+..+.+.... ...+|+++|+||+|+...+.+...++..++..+++.|+++||++|.||.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~SA~~g~~v~~ 155 (165)
T cd04140 76 FILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNHNVQE 155 (165)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccccCeecHHHHHHHHHHhCCcEEEeecCCCCCHHH
Confidence 89999999999999999999888754321 11289999999999976666777778888888888999999999999999
Q ss_pred HHHHHHHH
Q psy2600 111 NTRTPEIN 118 (158)
Q Consensus 111 lf~~l~~~ 118 (158)
+|++|++.
T Consensus 156 ~f~~l~~~ 163 (165)
T cd04140 156 LFQELLNL 163 (165)
T ss_pred HHHHHHhc
Confidence 99999864
No 46
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.82 E-value=2.8e-19 Score=125.30 Aligned_cols=91 Identities=25% Similarity=0.319 Sum_probs=77.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCC---CCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKS---STPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
+++|+|||++++.+|+.+..|+.++...... ....|+++|+||+|+...+.+..++...+++..++.++++||++|.
T Consensus 74 d~~ilv~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 153 (168)
T cd04119 74 QGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSACTGE 153 (168)
T ss_pred CEEEEEEECCCHHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhcccccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 3499999999999999999999999865431 1128999999999997555667778888888888999999999999
Q ss_pred CHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPL 120 (158)
Q Consensus 107 ~i~~lf~~l~~~~~ 120 (158)
|++++|+.|++.+.
T Consensus 154 gi~~l~~~l~~~l~ 167 (168)
T cd04119 154 GVNEMFQTLFSSIV 167 (168)
T ss_pred CHHHHHHHHHHHHh
Confidence 99999999998764
No 47
>KOG0095|consensus
Probab=99.82 E-value=1.2e-19 Score=123.57 Aligned_cols=110 Identities=24% Similarity=0.396 Sum_probs=99.1
Q ss_pred CCcceEEEEEEECCCCCCeE------------------------------------------------------------
Q psy2600 12 DNYEIQLKVVLLGDPSCGKI------------------------------------------------------------ 31 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~vgk~------------------------------------------------------------ 31 (158)
+.|+|++|++++|+++|||+
T Consensus 2 edykflfkivlvgnagvgktclvrrftqglfppgqgatigvdfmiktvev~gekiklqiwdtagqerfrsitqsyyrsah 81 (213)
T KOG0095|consen 2 EDYKFLFKIVLVGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQERFRSITQSYYRSAH 81 (213)
T ss_pred cccceeEEEEEEccCCcCcchhhhhhhccCCCCCCCceeeeeEEEEEEEECCeEEEEEEeeccchHHHHHHHHHHhhhcc
Confidence 46899999999999999998
Q ss_pred -EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 -VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 -~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++-..||+-++.|+.++.++.... +--|+||||+|+...+++....++.+++....-|+|+||++..||+.
T Consensus 82 alilvydiscqpsfdclpewlreie~yan~k--vlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~nve~ 159 (213)
T KOG0095|consen 82 ALILVYDISCQPSFDCLPEWLREIEQYANNK--VLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEADNVEK 159 (213)
T ss_pred eEEEEEecccCcchhhhHHHHHHHHHHhhcc--eEEEeeccccchhhhhhhhHHHHHHHHHhhhhhhhhhcccchhhHHH
Confidence 899999999999999999999999877665 78899999999988888998899999998777789999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
||..++-.+....
T Consensus 160 lf~~~a~rli~~a 172 (213)
T KOG0095|consen 160 LFLDLACRLISEA 172 (213)
T ss_pred HHHHHHHHHHHHH
Confidence 9999887665543
No 48
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.82 E-value=3.3e-19 Score=125.38 Aligned_cols=85 Identities=29% Similarity=0.402 Sum_probs=74.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+...++..+++.++. .++++||++|.|+++
T Consensus 79 ~llv~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ivv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v~~ 156 (165)
T cd01864 79 AIIAYDITRRSSFESVPHWIEEVEKYGASN--VVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQNVEE 156 (165)
T ss_pred EEEEEECcCHHHHHhHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEEECCCCCCHHH
Confidence 999999999999999999999998654444 89999999999976666677788888888875 689999999999999
Q ss_pred HHHHHHHH
Q psy2600 111 NTRTPEIN 118 (158)
Q Consensus 111 lf~~l~~~ 118 (158)
+|+.+++.
T Consensus 157 ~~~~l~~~ 164 (165)
T cd01864 157 AFLLMATE 164 (165)
T ss_pred HHHHHHHh
Confidence 99999875
No 49
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.82 E-value=2.2e-19 Score=132.44 Aligned_cols=86 Identities=20% Similarity=0.272 Sum_probs=72.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.||+.+..|+.++...... +|+++||||+|+.. +.+..++. .+++..++.||+|||++|.||.++
T Consensus 89 ~ilvfD~~~~~s~~~i~~w~~~i~~~~~~---~piilvgNK~Dl~~-~~v~~~~~-~~~~~~~~~~~e~SAk~~~~i~~~ 163 (219)
T PLN03071 89 AIIMFDVTARLTYKNVPTWHRDLCRVCEN---IPIVLCGNKVDVKN-RQVKAKQV-TFHRKKNLQYYEISAKSNYNFEKP 163 (219)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCC---CcEEEEEEchhhhh-ccCCHHHH-HHHHhcCCEEEEcCCCCCCCHHHH
Confidence 89999999999999999999999865533 99999999999864 23334444 677778899999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|.+|++.+.+.
T Consensus 164 f~~l~~~~~~~ 174 (219)
T PLN03071 164 FLYLARKLAGD 174 (219)
T ss_pred HHHHHHHHHcC
Confidence 99999988654
No 50
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.82 E-value=2.9e-19 Score=129.88 Aligned_cols=95 Identities=21% Similarity=0.224 Sum_probs=79.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhc--CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNR--KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSARTG 105 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~--~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~ 105 (158)
++++|+|||++++.||+.+..|+..+.... .....+|+++|+||+|+...+.+..+++..+++.++ ..|+++||++|
T Consensus 74 a~~~ilv~D~t~~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak~~ 153 (201)
T cd04107 74 AVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSAKEG 153 (201)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCcccccccCHHHHHHHHHHcCCceEEEEeCCCC
Confidence 355999999999999999999999887431 111238999999999997556677888999999988 68999999999
Q ss_pred CCHHHHHHHHHHHHHHhH
Q psy2600 106 DNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~~ 123 (158)
.||+++|+++++.+....
T Consensus 154 ~~v~e~f~~l~~~l~~~~ 171 (201)
T cd04107 154 INIEEAMRFLVKNILAND 171 (201)
T ss_pred CCHHHHHHHHHHHHHHhc
Confidence 999999999999887653
No 51
>PTZ00369 Ras-like protein; Provisional
Probab=99.82 E-value=4.3e-19 Score=127.84 Aligned_cols=90 Identities=26% Similarity=0.285 Sum_probs=78.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++++|+.+..|+..+.+... .+ +|+++|+||+|+...+.+...++..+++.++.+++++||++|.||++
T Consensus 80 iilv~D~s~~~s~~~~~~~~~~i~~~~~~~~--~piiiv~nK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~Sak~~~gi~~ 157 (189)
T PTZ00369 80 FLCVYSITSRSSFEEIASFREQILRVKDKDR--VPMILVGNKCDLDSERQVSTGEGQELAKSFGIPFLETSAKQRVNVDE 157 (189)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccccccCHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence 8999999999999999999999875432 23 89999999999976666777778888888889999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|.++++.+....
T Consensus 158 ~~~~l~~~l~~~~ 170 (189)
T PTZ00369 158 AFYELVREIRKYL 170 (189)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887654
No 52
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.82 E-value=3.5e-19 Score=124.56 Aligned_cols=86 Identities=24% Similarity=0.251 Sum_probs=74.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..++...+++.++.+++++||++|.|+.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (163)
T cd04136 76 FVLVYSITSQSSFNDLQDLREQILRVKDTEN--VPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINVDE 153 (163)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccccccceecHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 8999999999999999999999885432 23 89999999999976666677777888888888999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 111 NTRTPEINP 119 (158)
Q Consensus 111 lf~~l~~~~ 119 (158)
+|+++++.+
T Consensus 154 l~~~l~~~~ 162 (163)
T cd04136 154 VFADLVRQI 162 (163)
T ss_pred HHHHHHHhc
Confidence 999998754
No 53
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.82 E-value=3.8e-19 Score=124.87 Aligned_cols=86 Identities=22% Similarity=0.221 Sum_probs=75.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||+++..+|+.+..|+..+.... ..+ .|+++|+||+|+...+.+...+...+++.++++|+++||++|.|+.+
T Consensus 76 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 153 (164)
T cd04175 76 FVLVYSITAQSTFNDLQDLREQILRVKDTED--VPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINVNE 153 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECCcchhccEEcHHHHHHHHHHhCCEEEEeeCCCCCCHHH
Confidence 899999999999999999999987543 233 89999999999987666677777888888899999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 111 NTRTPEINP 119 (158)
Q Consensus 111 lf~~l~~~~ 119 (158)
+|.++++.+
T Consensus 154 ~~~~l~~~l 162 (164)
T cd04175 154 IFYDLVRQI 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998765
No 54
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.82 E-value=3e-19 Score=128.15 Aligned_cols=88 Identities=18% Similarity=0.202 Sum_probs=72.4
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC-----CccccHHHHHHHHHHhCCeEEEEeCCCC
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH-----QRVVTLERHAKLAQSLHLHSFAVSARTG 105 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-----~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (158)
++++|||++++.||+++..|+..+.+..... +| ++|+||+|+.. .+....++++.+++.++..++++||++|
T Consensus 75 ~iilv~D~t~~~s~~~i~~~~~~~~~~~~~~--~p-ilVgnK~Dl~~~~~~~~~~~~~~~~~~~a~~~~~~~~e~SAk~g 151 (182)
T cd04128 75 AILFMFDLTRKSTLNSIKEWYRQARGFNKTA--IP-ILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSHS 151 (182)
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CE-EEEEEchhccccccchhhhhhHHHHHHHHHHcCCEEEEEeCCCC
Confidence 3899999999999999999999998655443 67 68899999842 1112235677788888999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.||+++|..+++.+.+
T Consensus 152 ~~v~~lf~~l~~~l~~ 167 (182)
T cd04128 152 INVQKIFKIVLAKAFD 167 (182)
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988865
No 55
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.81 E-value=3.2e-19 Score=127.08 Aligned_cols=86 Identities=16% Similarity=0.220 Sum_probs=72.8
Q ss_pred eEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhC-C
Q psy2600 30 KIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLH-L 95 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~ 95 (158)
+++|+|||+++++||+.+. .|+..+..... + +|+++|+||+|+... +.++.+++..+++.++ +
T Consensus 74 d~~ilv~d~~~~~sf~~~~~~~~~~~~~~~~-~--~piilvgnK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 150 (174)
T cd01871 74 DVFLICFSLVSPASFENVRAKWYPEVRHHCP-N--TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAV 150 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEeeChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCc
Confidence 3399999999999999996 69888875543 3 999999999999542 2467888899999988 4
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
.|++|||++|.||+++|+.+++.
T Consensus 151 ~~~e~Sa~~~~~i~~~f~~l~~~ 173 (174)
T cd01871 151 KYLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEEEecccccCCHHHHHHHHHHh
Confidence 89999999999999999999864
No 56
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.81 E-value=5.3e-19 Score=127.43 Aligned_cols=90 Identities=17% Similarity=0.290 Sum_probs=74.4
Q ss_pred eEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc------------cccHHHHHHHHHHhC-C
Q psy2600 30 KIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQR------------VVTLERHAKLAQSLH-L 95 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~-~ 95 (158)
+.+++|||+++++||+.+. .|+..+...... .|+++|+||+|+.... .+..+++..+++..+ +
T Consensus 73 ~~~ilv~dv~~~~sf~~~~~~~~~~i~~~~~~---~piilvgNK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (189)
T cd04134 73 DVIMLCFSVDSPDSLENVESKWLGEIREHCPG---VKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINAL 149 (189)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 4599999999999999986 699998865432 8999999999996433 244566777887776 6
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
.|++|||++|.||+++|.++++.+...
T Consensus 150 ~~~e~SAk~~~~v~e~f~~l~~~~~~~ 176 (189)
T cd04134 150 RYLECSAKLNRGVNEAFTEAARVALNV 176 (189)
T ss_pred EEEEccCCcCCCHHHHHHHHHHHHhcc
Confidence 899999999999999999999988643
No 57
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.81 E-value=8.9e-19 Score=122.60 Aligned_cols=86 Identities=23% Similarity=0.268 Sum_probs=74.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||+++..+|+.+..|+..+.... ..+ +|+++|+||+|+...+.+..++...+++.++..++++||++|.||.+
T Consensus 77 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piiiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 154 (164)
T cd04145 77 FLLVFSVTDRGSFEEVDKFHTQILRVKDRDE--FPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNVDK 154 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCC--CCEEEEeeCccccccceecHHHHHHHHHHcCCcEEEeeCCCCCCHHH
Confidence 999999999999999999999887542 223 89999999999976666666778888888889999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 111 NTRTPEINP 119 (158)
Q Consensus 111 lf~~l~~~~ 119 (158)
+|+.+++.+
T Consensus 155 l~~~l~~~~ 163 (164)
T cd04145 155 AFHDLVRVI 163 (164)
T ss_pred HHHHHHHhh
Confidence 999998764
No 58
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.81 E-value=5.9e-19 Score=128.28 Aligned_cols=95 Identities=20% Similarity=0.197 Sum_probs=79.0
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhc---CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-HhCCeEEEEeCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNR---KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-SLHLHSFAVSAR 103 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~---~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~ 103 (158)
..+++|+|||++++.||+.+..|+..+.+.. ... +|+++|+||+|+...+.+..++...++. .++++|++|||+
T Consensus 80 ~ad~iilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~--~piiivgNK~Dl~~~~~~~~~~~~~~~~~~~~~~~~e~Sak 157 (198)
T cd04142 80 NSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKE--PPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAK 157 (198)
T ss_pred cCCEEEEEEECCCHHHHHHHHHHHHHHHHhcccCCCC--CCEEEEEECccccccccccHHHHHHHHHHhcCCcEEEecCC
Confidence 4677999999999999999999999887653 233 9999999999997666666666666654 568899999999
Q ss_pred CCCCHHHHHHHHHHHHHHhHh
Q psy2600 104 TGDNCWVNTRTPEINPLKYLQ 124 (158)
Q Consensus 104 ~~~~i~~lf~~l~~~~~~~~~ 124 (158)
+|.||.++|+.+++.+..+..
T Consensus 158 ~g~~v~~lf~~i~~~~~~~~~ 178 (198)
T cd04142 158 YNWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCCHHHHHHHHHHHhhccCC
Confidence 999999999999998876543
No 59
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.81 E-value=6.5e-19 Score=130.10 Aligned_cols=88 Identities=22% Similarity=0.248 Sum_probs=73.8
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 97 (158)
+|+|||+++++||+.+ ..|..++....+. .|++|||||+|+... ..+..+++..+++..|. .|
T Consensus 76 illvfdis~~~Sf~~i~~~w~~~~~~~~~~---~piiLVgnK~DL~~~~~~~~~~~~~~~~pIs~e~g~~~ak~~~~~~y 152 (222)
T cd04173 76 VLICFDISRPETLDSVLKKWQGETQEFCPN---AKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVSY 152 (222)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEEECcccccchhhhhhhhhccCCccCHHHHHHHHHHcCCCEE
Confidence 9999999999999999 4688777655433 999999999998532 13677889999999995 89
Q ss_pred EEEeCCCCCC-HHHHHHHHHHHHHHh
Q psy2600 98 FAVSARTGDN-CWVNTRTPEINPLKY 122 (158)
Q Consensus 98 ~~~Sa~~~~~-i~~lf~~l~~~~~~~ 122 (158)
+||||+++.+ |.++|+.++.....+
T Consensus 153 ~E~SAk~~~~~V~~~F~~~~~~~~~~ 178 (222)
T cd04173 153 VECSSRSSERSVRDVFHVATVASLGR 178 (222)
T ss_pred EEcCCCcCCcCHHHHHHHHHHHHHhc
Confidence 9999999885 999999999987654
No 60
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.81 E-value=9.4e-19 Score=122.69 Aligned_cols=88 Identities=25% Similarity=0.248 Sum_probs=75.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++++|+.+..|...+...... .+.|+++|+||+|+...+.+..+....+++.++.+|+++||++|.|++++
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~-~~~pii~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 153 (164)
T smart00173 75 FLLVYSITDRQSFEEIKKFREQILRVKDR-DDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNVDEA 153 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccceEcHHHHHHHHHHcCCEEEEeecCCCCCHHHH
Confidence 99999999999999999998888744321 12899999999999766666777888888888999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|+.+++.+.
T Consensus 154 ~~~l~~~~~ 162 (164)
T smart00173 154 FYDLVREIR 162 (164)
T ss_pred HHHHHHHHh
Confidence 999998764
No 61
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.80 E-value=1.1e-18 Score=122.16 Aligned_cols=86 Identities=31% Similarity=0.376 Sum_probs=76.5
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
++++|||++++.+|..+..|+..+....... +|+++|+||+|+.....+..+++..+++..+..++++||+++.|+.+
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 152 (161)
T cd04113 75 GALLVYDITNRTSFEALPTWLSDARALASPN--IVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENVEE 152 (161)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcchhccCCHHHHHHHHHHcCCEEEEEECCCCCCHHH
Confidence 3999999999999999999999987655443 99999999999976666777888889999999999999999999999
Q ss_pred HHHHHHHH
Q psy2600 111 NTRTPEIN 118 (158)
Q Consensus 111 lf~~l~~~ 118 (158)
+|+.+++.
T Consensus 153 ~~~~~~~~ 160 (161)
T cd04113 153 AFLKCARS 160 (161)
T ss_pred HHHHHHHh
Confidence 99999875
No 62
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.80 E-value=9.9e-19 Score=123.54 Aligned_cols=87 Identities=21% Similarity=0.294 Sum_probs=72.9
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++|+|||++++.||+.+..|+..+..... + +|+++|+||+|+.. +.+. .+...+++..++.++++||++|.||+
T Consensus 74 d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~-~--~piiiv~nK~Dl~~-~~~~-~~~~~~~~~~~~~~~e~Sa~~~~~v~ 148 (166)
T cd00877 74 QCAIIMFDVTSRVTYKNVPNWHRDLVRVCG-N--IPIVLCGNKVDIKD-RKVK-AKQITFHRKKNLQYYEISAKSNYNFE 148 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCC-C--CcEEEEEEchhccc-ccCC-HHHHHHHHHcCCEEEEEeCCCCCChH
Confidence 339999999999999999999999986654 2 99999999999973 3333 34456667777899999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++|++|++.+.+
T Consensus 149 ~~f~~l~~~~~~ 160 (166)
T cd00877 149 KPFLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHHHh
Confidence 999999988865
No 63
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.80 E-value=1.1e-18 Score=122.41 Aligned_cols=87 Identities=21% Similarity=0.156 Sum_probs=74.3
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
++++|||++++.||+++..|+..+.+... .+ +|+++|+||+|+.....+...+...+++.++.+++++||+++.|+.
T Consensus 75 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piviv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd04176 75 GFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEK--VPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMVN 152 (163)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccchhcCccCHHHHHHHHHHhCCEEEEecCCCCCCHH
Confidence 39999999999999999999999885432 23 9999999999997655666667788888888899999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 110 VNTRTPEINP 119 (158)
Q Consensus 110 ~lf~~l~~~~ 119 (158)
++|.++++.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd04176 153 ELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHhc
Confidence 9999998754
No 64
>KOG0083|consensus
Probab=99.80 E-value=1.1e-19 Score=121.61 Aligned_cols=91 Identities=26% Similarity=0.368 Sum_probs=84.8
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++++||+++..||++++.|+.+++++.... +-++++|||||+..++.+..++++.+++.++++|.|+||++|.||+.
T Consensus 73 allllydiankasfdn~~~wlsei~ey~k~~--v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~ 150 (192)
T KOG0083|consen 73 ALLLLYDIANKASFDNCQAWLSEIHEYAKEA--VALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDL 150 (192)
T ss_pred eeeeeeecccchhHHHHHHHHHHHHHHHHhh--HhHhhhccccccchhhccccchHHHHHHHHCCCceeccccccccHhH
Confidence 3999999999999999999999999887665 88999999999988888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
.|-.|.+.+.+..
T Consensus 151 af~~ia~~l~k~~ 163 (192)
T KOG0083|consen 151 AFLAIAEELKKLK 163 (192)
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988764
No 65
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.80 E-value=1.9e-18 Score=120.78 Aligned_cols=90 Identities=29% Similarity=0.384 Sum_probs=78.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+.+++|||++++.+|+.+..|+..+..+.... +|+++|+||+|+.....+..+.+..+++.++++++++||+++.|++
T Consensus 74 d~~ilv~d~~~~~s~~~~~~~l~~~~~~~~~~--~pivvv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~i~ 151 (164)
T smart00175 74 VGALLVYDITNRESFENLKNWLKELREYADPN--VVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNVE 151 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEEchhcccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCHH
Confidence 34999999999999999999999998665433 9999999999997656667778888888889999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++|+.+.+.+.+
T Consensus 152 ~l~~~i~~~~~~ 163 (164)
T smart00175 152 EAFEELAREILK 163 (164)
T ss_pred HHHHHHHHHHhh
Confidence 999999988754
No 66
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.79 E-value=1.4e-18 Score=122.25 Aligned_cols=107 Identities=26% Similarity=0.266 Sum_probs=85.2
Q ss_pred cceEEEEEEECCCC------------CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc
Q psy2600 14 YEIQLKVVLLGDPS------------CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV 81 (158)
Q Consensus 14 ~~~~~ki~~~G~~~------------vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 81 (158)
..+.++++..+... ..+++|+|||++++.||+.+..|+..+........++|+++|+||+|+...+.+
T Consensus 45 ~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~v 124 (165)
T cd04146 45 EQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQV 124 (165)
T ss_pred EEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECCCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHhCcc
Confidence 34556666655433 136699999999999999999999988865420112999999999999766667
Q ss_pred cHHHHHHHHHHhCCeEEEEeCCCC-CCHHHHHHHHHHHHH
Q psy2600 82 TLERHAKLAQSLHLHSFAVSARTG-DNCWVNTRTPEINPL 120 (158)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~-~~i~~lf~~l~~~~~ 120 (158)
..+++..+++..+..|+++||+++ .||+++|+.+++.+.
T Consensus 125 ~~~~~~~~~~~~~~~~~e~Sa~~~~~~v~~~f~~l~~~~~ 164 (165)
T cd04146 125 STEEGEKLASELGCLFFEVSAAEDYDGVHSVFHELCREVR 164 (165)
T ss_pred CHHHHHHHHHHcCCEEEEeCCCCCchhHHHHHHHHHHHHh
Confidence 778888999998999999999999 499999999998764
No 67
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.79 E-value=1.7e-18 Score=121.05 Aligned_cols=86 Identities=24% Similarity=0.280 Sum_probs=75.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++++|||++++++|+.+..|+..+...... +|+++|+||+|+.....+..+++..+++.++++++++||++|.|++
T Consensus 76 ~~~v~v~d~~~~~s~~~l~~~~~~~~~~~~~---~p~iiv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (162)
T cd04106 76 QACILVFSTTDRESFEAIESWKEKVEAECGD---IPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFNVT 152 (162)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhcccccCCCHHHHHHHHHHcCCeEEEEECCCCCCHH
Confidence 4499999999999999999999998754433 9999999999997666677778888999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 110 VNTRTPEIN 118 (158)
Q Consensus 110 ~lf~~l~~~ 118 (158)
++|+.|...
T Consensus 153 ~l~~~l~~~ 161 (162)
T cd04106 153 ELFEYLAEK 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998754
No 68
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.79 E-value=3.1e-18 Score=124.23 Aligned_cols=103 Identities=17% Similarity=0.177 Sum_probs=86.3
Q ss_pred CcceEEEEEEE-CCC--------CCCeEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCC-----
Q psy2600 13 NYEIQLKVVLL-GDP--------SCGKIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEH----- 77 (158)
Q Consensus 13 ~~~~~~ki~~~-G~~--------~vgk~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~----- 77 (158)
+..+.+.+|.. |.. .-++++|+|||++++.||+.+. .|+..++..... +|+++||||+||..
T Consensus 63 ~~~v~l~iwDTaG~~~~~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~---~piilvgNK~DL~~~~~~~ 139 (195)
T cd01873 63 GVSVSLRLWDTFGDHDKDRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPR---VPVILVGCKLDLRYADLDE 139 (195)
T ss_pred CEEEEEEEEeCCCChhhhhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCC---CCEEEEEEchhccccccch
Confidence 44566777775 542 3568899999999999999997 699998865432 89999999999863
Q ss_pred --------------CccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 78 --------------QRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 78 --------------~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
.+.++.++++.+++.+++.|+||||++|.||+++|+.+++.
T Consensus 140 ~~~~~~~~~~~~~~~~~V~~~e~~~~a~~~~~~~~E~SAkt~~~V~e~F~~~~~~ 194 (195)
T cd01873 140 VNRARRPLARPIKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIRA 194 (195)
T ss_pred hhhcccccccccccCCccCHHHHHHHHHHhCCEEEEcCCCCCCCHHHHHHHHHHh
Confidence 36788899999999999999999999999999999999864
No 69
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.79 E-value=4.6e-18 Score=120.01 Aligned_cols=86 Identities=17% Similarity=0.278 Sum_probs=72.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCC--CCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKS--STPTYVALVANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~--~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 108 (158)
+++|||+++++||+.+..|+..+...... ...+|+++|+||+|+. .+.+..+++.++++.++ ..++++||++|.|+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~v 159 (170)
T cd04116 81 CLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP-ERQVSTEEAQAWCRENGDYPYFETSAKDATNV 159 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc-ccccCHHHHHHHHHHCCCCeEEEEECCCCCCH
Confidence 88999999999999999999988753321 1128999999999986 44566778888988887 47999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 109 WVNTRTPEIN 118 (158)
Q Consensus 109 ~~lf~~l~~~ 118 (158)
.++|+.+++.
T Consensus 160 ~~~~~~~~~~ 169 (170)
T cd04116 160 AAAFEEAVRR 169 (170)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 70
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.79 E-value=3.7e-18 Score=118.93 Aligned_cols=85 Identities=24% Similarity=0.259 Sum_probs=72.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||+++..+|+.+..|+..+.+... .. +|+++|+||+|+.. +.....+...+++.++..++++||++|.|+++
T Consensus 76 ~i~v~~~~~~~s~~~~~~~~~~i~~~~~~~~--~piivv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 152 (162)
T cd04138 76 FLCVFAINSRKSFEDIHTYREQIKRVKDSDD--VPMVLVGNKCDLAA-RTVSSRQGQDLAKSYGIPYIETSAKTRQGVEE 152 (162)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccccc-ceecHHHHHHHHHHhCCeEEEecCCCCCCHHH
Confidence 8999999999999999999998885532 23 89999999999865 34556677788888899999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 111 NTRTPEINP 119 (158)
Q Consensus 111 lf~~l~~~~ 119 (158)
+|+++++.+
T Consensus 153 l~~~l~~~~ 161 (162)
T cd04138 153 AFYTLVREI 161 (162)
T ss_pred HHHHHHHHh
Confidence 999998754
No 71
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.78 E-value=3.2e-18 Score=121.13 Aligned_cols=86 Identities=28% Similarity=0.402 Sum_probs=76.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCC---CCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSART---GDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~ 107 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+...++..+++.+++.|+++||++ +.|
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~~~~~~~ 156 (170)
T cd04115 79 VVFVYDVTNMASFHSLPSWIEECEQHSLPNE--VPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSENDH 156 (170)
T ss_pred EEEEEECCCHHHHHhHHHHHHHHHHhcCCCC--CCEEEEEECccchhhcCCCHHHHHHHHHHcCCcEEEEeccCCcCCCC
Confidence 9999999999999999999999885532 23 99999999999987777777888889998889999999999 889
Q ss_pred HHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINP 119 (158)
Q Consensus 108 i~~lf~~l~~~~ 119 (158)
|+++|..+++.+
T Consensus 157 i~~~f~~l~~~~ 168 (170)
T cd04115 157 VEAIFMTLAHKL 168 (170)
T ss_pred HHHHHHHHHHHh
Confidence 999999998765
No 72
>PTZ00099 rab6; Provisional
Probab=99.78 E-value=1.2e-17 Score=119.30 Aligned_cols=108 Identities=26% Similarity=0.291 Sum_probs=88.8
Q ss_pred CcceEEEEEEECCCC-----------CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc
Q psy2600 13 NYEIQLKVVLLGDPS-----------CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV 81 (158)
Q Consensus 13 ~~~~~~ki~~~G~~~-----------vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~ 81 (158)
+..+++.+|..+... -++++|+|||++++.||+.+..|+..+....... +|+++|+||+|+...+.+
T Consensus 26 ~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~i~~~~~~~--~piilVgNK~DL~~~~~v 103 (176)
T PTZ00099 26 EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKD--VIIALVGNKTDLGDLRKV 103 (176)
T ss_pred CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccCC
Confidence 344566666655322 4567999999999999999999999987544333 899999999999766667
Q ss_pred cHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 82 TLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
..+++..+++.++..|+++||++|.||+++|++|++.+.+.
T Consensus 104 ~~~e~~~~~~~~~~~~~e~SAk~g~nV~~lf~~l~~~l~~~ 144 (176)
T PTZ00099 104 TYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred CHHHHHHHHHHcCCEEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 78888888888888999999999999999999999998764
No 73
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.78 E-value=1.7e-18 Score=122.52 Aligned_cols=90 Identities=20% Similarity=0.236 Sum_probs=76.4
Q ss_pred CCeEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc------------cccHHHHHHHHHHhC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQR------------VVTLERHAKLAQSLH 94 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~ 94 (158)
..+++|+|||+++++||+.+. .|+..+..+.+. +|+++|+||+|+.... .++.+++..+++.++
T Consensus 69 ~~d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 145 (174)
T smart00174 69 DTDVFLICFSVDSPASFENVKEKWYPEVKHFCPN---TPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIG 145 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEecChhhhhChhhhhhhhcccCCCccHHHHHHHHHHcC
Confidence 347799999999999999986 699998865443 9999999999986422 266778888999988
Q ss_pred C-eEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 95 L-HSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 95 ~-~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
. .|+++||+++.||+++|+.+++.+.
T Consensus 146 ~~~~~e~Sa~~~~~v~~lf~~l~~~~~ 172 (174)
T smart00174 146 AVKYLECSALTQEGVREVFEEAIRAAL 172 (174)
T ss_pred CcEEEEecCCCCCCHHHHHHHHHHHhc
Confidence 5 8999999999999999999998764
No 74
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.78 E-value=4.4e-18 Score=119.28 Aligned_cols=88 Identities=25% Similarity=0.278 Sum_probs=75.6
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
++++++|||++++.+|+.+..|+..+...... +|+++|+||+|+.....+....+..++..++..++++||+++.|+
T Consensus 76 ~d~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 152 (164)
T cd04101 76 PSVFILVYDVSNKASFENCSRWVNKVRTASKH---MPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY 152 (164)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEeCCCCCCh
Confidence 34599999999999999999999998865422 899999999999766666666777777778889999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 109 WVNTRTPEINP 119 (158)
Q Consensus 109 ~~lf~~l~~~~ 119 (158)
+++|+.+++.+
T Consensus 153 ~~l~~~l~~~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHh
Confidence 99999998864
No 75
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.78 E-value=6.8e-18 Score=119.77 Aligned_cols=90 Identities=21% Similarity=0.275 Sum_probs=74.2
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCcc--ccHHHHHHHHHHhCCeEEEEeCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRV--VTLERHAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
+.+++|||++++.+|+.+..|+..+.+.. +.. +|+++|+||+|+..... ...+++..+++.++..|+++||++|.
T Consensus 74 d~~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~iilVgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~g~ 151 (170)
T cd04108 74 QAIIIVFDLTDVASLEHTRQWLEDALKENDPSS--VLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSGE 151 (170)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CeEEEEEEChhcCccccccccHHHHHHHHHHcCCeEEEEECCCCC
Confidence 34999999999999999999999986443 333 78999999999854332 34556777888888899999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
|++++|+.+++.+.+
T Consensus 152 ~v~~lf~~l~~~~~~ 166 (170)
T cd04108 152 NVREFFFRVAALTFE 166 (170)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999988754
No 76
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.78 E-value=5.7e-18 Score=125.06 Aligned_cols=108 Identities=19% Similarity=0.129 Sum_probs=88.9
Q ss_pred cceEEEEEEECCCC----------CCeEEEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCcccc
Q psy2600 14 YEIQLKVVLLGDPS----------CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVT 82 (158)
Q Consensus 14 ~~~~~ki~~~G~~~----------vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~ 82 (158)
.++.+.++..+... -++++++|||++++.||+.+..|+..+..... .. +|+++|+||+|+...+.+.
T Consensus 48 ~~~~l~i~Dt~G~~~~~~~~~~~~~ad~iilV~d~td~~S~~~~~~~~~~l~~~~~~~~--~piilV~NK~Dl~~~~~v~ 125 (221)
T cd04148 48 EESTLVVIDHWEQEMWTEDSCMQYQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLED--RPIILVGNKSDLARSREVS 125 (221)
T ss_pred EEEEEEEEeCCCcchHHHhHHhhcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEEChhccccceec
Confidence 34555666655432 46889999999999999999999999886432 22 9999999999997767777
Q ss_pred HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 83 LERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
.+++..++..+++.|+++||+++.||+++|+.+++.+....
T Consensus 126 ~~~~~~~a~~~~~~~~e~SA~~~~gv~~l~~~l~~~~~~~~ 166 (221)
T cd04148 126 VQEGRACAVVFDCKFIETSAGLQHNVDELLEGIVRQIRLRR 166 (221)
T ss_pred HHHHHHHHHHcCCeEEEecCCCCCCHHHHHHHHHHHHHhhh
Confidence 77788888888999999999999999999999999887543
No 77
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.78 E-value=5.1e-18 Score=121.67 Aligned_cols=93 Identities=20% Similarity=0.195 Sum_probs=78.0
Q ss_pred CCeEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC----ccccHHHHHHHHHHhCC-eEEEEe
Q psy2600 28 CGKIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ----RVVTLERHAKLAQSLHL-HSFAVS 101 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~-~~~~~S 101 (158)
.++++++|||++++.||+.+. .|+..+...... +|+++|+||+|+... +.+...++..++..++. .++++|
T Consensus 72 ~ad~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~S 148 (187)
T cd04132 72 DVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPG---TPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECS 148 (187)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeChhhhhCccccCCcCHHHHHHHHHHcCCcEEEEcc
Confidence 346699999999999999986 698888754432 899999999998642 24567788889999887 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhH
Q psy2600 102 ARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~~~~~~~ 123 (158)
|++|.||.++|..+++.+....
T Consensus 149 a~~~~~v~~~f~~l~~~~~~~~ 170 (187)
T cd04132 149 AKTMENVEEVFDTAIEEALKKE 170 (187)
T ss_pred CCCCCCHHHHHHHHHHHHHhhh
Confidence 9999999999999999887754
No 78
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.77 E-value=9.1e-18 Score=116.92 Aligned_cols=88 Identities=28% Similarity=0.388 Sum_probs=76.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++++|||+++.++++.+..|+.++....... +|+++|+||+|+.....+...+...+++.++..++++||+++.|++
T Consensus 74 ~~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~gi~ 151 (162)
T cd04123 74 DGAILVYDITDADSFQKVKKWIKELKQMRGNN--ISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGIE 151 (162)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCHH
Confidence 34999999999999999999999998665544 9999999999998666666777788888889999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 110 VNTRTPEINP 119 (158)
Q Consensus 110 ~lf~~l~~~~ 119 (158)
++|+++.+.+
T Consensus 152 ~~~~~l~~~~ 161 (162)
T cd04123 152 ELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHh
Confidence 9999998764
No 79
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.77 E-value=9.2e-18 Score=117.84 Aligned_cols=85 Identities=22% Similarity=0.350 Sum_probs=71.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+++..|+..+++.... +|+++|+||+|+... . ..+...+++..+++++++||++|.|++++
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~p~ivv~nK~Dl~~~--~-~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 149 (161)
T cd04124 76 CILVFDVTRKITYKNLSKWYEELREYRPE---IPCIVVANKIDLDPS--V-TQKKFNFAEKHNLPLYYVSAADGTNVVKL 149 (161)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCC---CcEEEEEECccCchh--H-HHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 99999999999999999999999865433 899999999998532 1 23455677777889999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+.+++.+.++
T Consensus 150 ~~~l~~~~~~~ 160 (161)
T cd04124 150 FQDAIKLAVSY 160 (161)
T ss_pred HHHHHHHHHhc
Confidence 99999887653
No 80
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.77 E-value=1.6e-17 Score=116.27 Aligned_cols=88 Identities=33% Similarity=0.423 Sum_probs=76.9
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++++|||++++++|+....|+..+....... +|+++++||+|+........++...+.+.++..++++||++|.|+.
T Consensus 75 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 152 (163)
T cd01860 75 AAAIVVYDITSEESFEKAKSWVKELQRNASPN--IIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENVN 152 (163)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECccccccCcCCHHHHHHHHHHcCCEEEEEECCCCCCHH
Confidence 44999999999999999999999998655333 9999999999987655666778888888888999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 110 VNTRTPEINP 119 (158)
Q Consensus 110 ~lf~~l~~~~ 119 (158)
++|+.+++.+
T Consensus 153 ~l~~~l~~~l 162 (163)
T cd01860 153 ELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHh
Confidence 9999999875
No 81
>PLN03118 Rab family protein; Provisional
Probab=99.77 E-value=1.8e-17 Score=121.38 Aligned_cols=90 Identities=24% Similarity=0.309 Sum_probs=75.0
Q ss_pred EEEEEECCChhHHhhHHH-HHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++++|+.+.. |...+...... ...|+++|+||+|+...+.+..++...++..+++.|+++||+++.|+++
T Consensus 89 ~vlv~D~~~~~sf~~~~~~~~~~~~~~~~~-~~~~~ilv~NK~Dl~~~~~i~~~~~~~~~~~~~~~~~e~SAk~~~~v~~ 167 (211)
T PLN03118 89 IILVYDVTRRETFTNLSDVWGKEVELYSTN-QDCVKMLVGNKVDRESERDVSREEGMALAKEHGCLFLECSAKTRENVEQ 167 (211)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcCC-CCCCEEEEEECccccccCccCHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 899999999999999975 66666543321 1279999999999976666777788888888899999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|+.|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (211)
T PLN03118 168 CFEELALKIMEV 179 (211)
T ss_pred HHHHHHHHHHhh
Confidence 999999998664
No 82
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.77 E-value=2.1e-17 Score=119.07 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=75.9
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC----ccccHHHHHHHHHHhCCeEEEEeCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ----RVVTLERHAKLAQSLHLHSFAVSARTG 105 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~----~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (158)
+.+++|||++++.+|+.+..|+..+...... .|+++|+||+|+... +.+...++..+++.++..++++||+++
T Consensus 75 d~iilv~d~~~~~s~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 151 (193)
T cd04118 75 KAAIVCYDLTDSSSFERAKFWVKELQNLEEH---CKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTG 151 (193)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhcCCC---CCEEEEEEcccccccccccCccCHHHHHHHHHHcCCeEEEEeCCCC
Confidence 4499999999999999999999998865432 899999999998532 344556677788888899999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2600 106 DNCWVNTRTPEINPLKY 122 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~ 122 (158)
.|++++|+.+++.+.+.
T Consensus 152 ~gv~~l~~~i~~~~~~~ 168 (193)
T cd04118 152 QNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 83
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.76 E-value=9.1e-18 Score=119.10 Aligned_cols=85 Identities=19% Similarity=0.316 Sum_probs=71.7
Q ss_pred eEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCC------------CccccHHHHHHHHHHhCC-
Q psy2600 30 KIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEH------------QRVVTLERHAKLAQSLHL- 95 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~- 95 (158)
+++|+|||++++.+|+.+. .|+..+...... +|+++|+||+|+.. .+.+..+++..+++..+.
T Consensus 73 ~~~i~v~d~~~~~sf~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~a~~~~~~ 149 (173)
T cd04130 73 DVFLLCFSVVNPSSFQNISEKWIPEIRKHNPK---APIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGAC 149 (173)
T ss_pred cEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEeeChhhccChhHHHHHhhcCCCCcCHHHHHHHHHHhCCC
Confidence 4499999999999999985 799888754332 89999999999853 345677888999998887
Q ss_pred eEEEEeCCCCCCHHHHHHHHHH
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEI 117 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~ 117 (158)
.|+++||++|.||+++|+.++-
T Consensus 150 ~~~e~Sa~~~~~v~~lf~~~~~ 171 (173)
T cd04130 150 EYIECSALTQKNLKEVFDTAIL 171 (173)
T ss_pred eEEEEeCCCCCCHHHHHHHHHh
Confidence 8999999999999999998763
No 84
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.76 E-value=1e-17 Score=125.67 Aligned_cols=94 Identities=17% Similarity=0.184 Sum_probs=75.2
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcC-------CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-hCCeEEEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRK-------SSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-LHLHSFAV 100 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~ 100 (158)
++++|+|||+++++||+.+..|++++..... ...++|+++|+||+|+...+.+..+++..++.. .++.++++
T Consensus 72 ad~iIlVfdv~~~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~~~~v~~~ei~~~~~~~~~~~~~ev 151 (247)
T cd04143 72 GDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFEV 151 (247)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchhccccCHHHHHHHHHhcCCCEEEEE
Confidence 4559999999999999999999999874311 111289999999999976556667777776654 46789999
Q ss_pred eCCCCCCHHHHHHHHHHHHHHh
Q psy2600 101 SARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 101 Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
||++|.||+++|+.|++.....
T Consensus 152 SAktg~gI~elf~~L~~~~~~p 173 (247)
T cd04143 152 SAKKNSNLDEMFRALFSLAKLP 173 (247)
T ss_pred eCCCCCCHHHHHHHHHHHhccc
Confidence 9999999999999999876443
No 85
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.76 E-value=2.8e-17 Score=115.70 Aligned_cols=86 Identities=24% Similarity=0.362 Sum_probs=73.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||+++..+|+.+..|+..++...... +|+++|+||+|+...+.+.......+.+.....++++||++|.|+.++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~~i~v~NK~D~~~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 160 (169)
T cd04114 83 LILTYDITCEESFRCLPEWLREIEQYANNK--VITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVEKL 160 (169)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEeeCCCCCCHHHH
Confidence 999999999999999999999888655443 899999999999766666666677777777788999999999999999
Q ss_pred HHHHHHHH
Q psy2600 112 TRTPEINP 119 (158)
Q Consensus 112 f~~l~~~~ 119 (158)
|+.+.+.+
T Consensus 161 ~~~i~~~~ 168 (169)
T cd04114 161 FLDLACRL 168 (169)
T ss_pred HHHHHHHh
Confidence 99998764
No 86
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.76 E-value=1.9e-17 Score=115.61 Aligned_cols=87 Identities=30% Similarity=0.420 Sum_probs=75.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+.+++|||++++.+|+.+..|+..+......+ .|+++|+||+|+...+....++...+++..++.++++||+++.|++
T Consensus 74 ~~ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~ 151 (161)
T cd01861 74 SVAVVVYDITNRQSFDNTDKWIDDVRDERGND--VIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNVK 151 (161)
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CEEEEEEEChhccccCccCHHHHHHHHHHhCCEEEEEeCCCCCCHH
Confidence 44999999999999999999999987544433 9999999999996555666777888888888999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 110 VNTRTPEIN 118 (158)
Q Consensus 110 ~lf~~l~~~ 118 (158)
++|+.+.+.
T Consensus 152 ~l~~~i~~~ 160 (161)
T cd01861 152 ELFRKIASA 160 (161)
T ss_pred HHHHHHHHh
Confidence 999999864
No 87
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.75 E-value=2.9e-17 Score=115.93 Aligned_cols=87 Identities=22% Similarity=0.232 Sum_probs=74.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 109 (158)
+++|||++++++|+.+..|...+.+.. ..+ .|+++++||+|+...+.+..++...+++.++ .+++++||+++.||.
T Consensus 76 ~vlv~~~~~~~s~~~~~~~~~~i~~~~~~~~--~piiiv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~~~~i~ 153 (168)
T cd04177 76 FLLVYSVTSEASLNELGELREQVLRIKDSDN--VPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTNVD 153 (168)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCC--CCEEEEEEChhccccCccCHHHHHHHHHHcCCceEEEeeCCCCCCHH
Confidence 899999999999999999999887532 223 9999999999997666666777778888887 789999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 110 VNTRTPEINPL 120 (158)
Q Consensus 110 ~lf~~l~~~~~ 120 (158)
++|+++++.+.
T Consensus 154 ~~f~~i~~~~~ 164 (168)
T cd04177 154 EVFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHHh
Confidence 99999998664
No 88
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.75 E-value=2.1e-17 Score=118.81 Aligned_cols=92 Identities=17% Similarity=0.277 Sum_probs=76.3
Q ss_pred CeEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCC----------CccccHHHHHHHHHHhCC-e
Q psy2600 29 GKIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEH----------QRVVTLERHAKLAQSLHL-H 96 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~----------~~~~~~~~~~~~~~~~~~-~ 96 (158)
++.++++||+++.++|+.+. .|+..+...... +|+++|+||+|+.. .+.+..+++..+++.++. .
T Consensus 73 a~~~llv~~i~~~~s~~~~~~~~~~~i~~~~~~---~piilvgnK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (187)
T cd04129 73 AHVILIGFAVDTPDSLENVRTKWIEEVRRYCPN---VPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKK 149 (187)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEeeChhhhhCcccccccccCCcCCHHHHHHHHHHhCCcE
Confidence 35599999999999999996 699998865443 99999999999843 234556778888888884 7
Q ss_pred EEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 97 SFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 97 ~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
||+|||++|.||+++|+.+++.+....
T Consensus 150 ~~e~Sa~~~~~v~~~f~~l~~~~~~~~ 176 (187)
T cd04129 150 YMECSALTGEGVDDVFEAATRAALLVR 176 (187)
T ss_pred EEEccCCCCCCHHHHHHHHHHHHhccc
Confidence 999999999999999999998876543
No 89
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.75 E-value=2.3e-17 Score=116.79 Aligned_cols=87 Identities=18% Similarity=0.245 Sum_probs=72.3
Q ss_pred eEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhCC-
Q psy2600 30 KIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLHL- 95 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~- 95 (158)
+.+++|||++++.+|+.+. .|+..+.... .+ .|+++|+||+|+... ..++.+++..+++..+.
T Consensus 73 ~~~ilv~~~~~~~s~~~~~~~~~~~l~~~~-~~--~piivv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 149 (174)
T cd04135 73 DVFLICFSVVNPASFQNVKEEWVPELKEYA-PN--VPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAH 149 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhC-CC--CCEEEEeEchhhhcChhhHHHHhhccCCCCCHHHHHHHHHHcCCC
Confidence 4499999999999999985 7888887553 33 999999999998532 24566778888888885
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
.|++|||++|.||+++|+.+++.+
T Consensus 150 ~~~e~Sa~~~~gi~~~f~~~~~~~ 173 (174)
T cd04135 150 CYVECSALTQKGLKTVFDEAILAI 173 (174)
T ss_pred EEEEecCCcCCCHHHHHHHHHHHh
Confidence 699999999999999999998765
No 90
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.75 E-value=2e-17 Score=120.47 Aligned_cols=104 Identities=18% Similarity=0.227 Sum_probs=83.7
Q ss_pred cceEEEEEEECCC-----------CCCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc
Q psy2600 14 YEIQLKVVLLGDP-----------SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT 82 (158)
Q Consensus 14 ~~~~~ki~~~G~~-----------~vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 82 (158)
..+.+.+|..+.. ..++++|+|||++++.||+.+..|+.++.+.... +|+++||||+|+.. +.+.
T Consensus 42 ~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~~~S~~~i~~w~~~i~~~~~~---~piilvgNK~Dl~~-~~v~ 117 (200)
T smart00176 42 GPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTARVTYKNVPNWHRDLVRVCEN---IPIVLCGNKVDVKD-RKVK 117 (200)
T ss_pred EEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCChHHHHHHHHHHHHHHHhCCC---CCEEEEEECccccc-ccCC
Confidence 4566667766543 2457899999999999999999999999875432 99999999999854 3344
Q ss_pred HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 83 LERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
.+ ...+++..++.|++|||++|.||.++|.++++.+.+.
T Consensus 118 ~~-~~~~~~~~~~~~~e~SAk~~~~v~~~F~~l~~~i~~~ 156 (200)
T smart00176 118 AK-SITFHRKKNLQYYDISAKSNYNFEKPFLWLARKLIGD 156 (200)
T ss_pred HH-HHHHHHHcCCEEEEEeCCCCCCHHHHHHHHHHHHHhc
Confidence 33 3467778889999999999999999999999988664
No 91
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.74 E-value=5.2e-17 Score=113.42 Aligned_cols=87 Identities=23% Similarity=0.240 Sum_probs=73.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|.....|+..+..... .+ +|+++|+||+|+.............+++.++.+++++||++|.|+++
T Consensus 75 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piiiv~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 152 (164)
T cd04139 75 FLLVFSITDMESFTATAEFREQILRVKDDDN--VPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNVEK 152 (164)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEeeCCCCCCHHH
Confidence 8999999999999999999988885422 23 99999999999975444556677778888889999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 111 NTRTPEINPL 120 (158)
Q Consensus 111 lf~~l~~~~~ 120 (158)
+|+.+.+.+.
T Consensus 153 l~~~l~~~~~ 162 (164)
T cd04139 153 AFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHH
Confidence 9999988764
No 92
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.74 E-value=2.4e-17 Score=116.80 Aligned_cols=87 Identities=16% Similarity=0.190 Sum_probs=70.2
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNC 108 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i 108 (158)
+.+++|||.+++.+|+.+..|+..+.... + +|+++|+||+|+...+.....+...+++.++. .++++||+++.|+
T Consensus 79 d~~llv~d~~~~~s~~~~~~~~~~~~~~~--~--~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v 154 (169)
T cd01892 79 DVACLVYDSSDPKSFSYCAEVYKKYFMLG--E--IPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDSS 154 (169)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHhccCC--C--CeEEEEEEcccccccccccccCHHHHHHHcCCCCCEEEEeccCccH
Confidence 34999999999999999999998764321 2 99999999999965444333456677787876 4799999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 109 WVNTRTPEINPL 120 (158)
Q Consensus 109 ~~lf~~l~~~~~ 120 (158)
.++|+.+++.+.
T Consensus 155 ~~lf~~l~~~~~ 166 (169)
T cd01892 155 NELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 93
>KOG4252|consensus
Probab=99.73 E-value=1.6e-17 Score=116.30 Aligned_cols=115 Identities=19% Similarity=0.254 Sum_probs=104.4
Q ss_pred ccccCCCCcceEEEEEEECCCCCCeE------------------------------------------------------
Q psy2600 6 MLNLHNDNYEIQLKVVLLGDPSCGKI------------------------------------------------------ 31 (158)
Q Consensus 6 ~~~~~~~~~~~~~ki~~~G~~~vgk~------------------------------------------------------ 31 (158)
.+.+..+.++..+|++++|+.+|||+
T Consensus 9 ~~am~e~d~e~aiK~vivGng~VGKssmiqryCkgifTkdykktIgvdflerqi~v~~Edvr~mlWdtagqeEfDaItkA 88 (246)
T KOG4252|consen 9 GMAMDETDYERAIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIKVLIEDVRSMLWDTAGQEEFDAITKA 88 (246)
T ss_pred cCCCCchhhhhhEEEEEECCCccchHHHHHHHhccccccccccccchhhhhHHHHhhHHHHHHHHHHhccchhHHHHHHH
Confidence 35667778889999999999999998
Q ss_pred -------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCC
Q psy2600 32 -------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSART 104 (158)
Q Consensus 32 -------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 104 (158)
.++||+.+|..||+.+..|++++.....+ +|.++|-||+|+..+.+++..+.+.+++.++..++.+|++.
T Consensus 89 yyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~---IPtV~vqNKIDlveds~~~~~evE~lak~l~~RlyRtSvke 165 (246)
T KOG4252|consen 89 YYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETER---IPTVFVQNKIDLVEDSQMDKGEVEGLAKKLHKRLYRTSVKE 165 (246)
T ss_pred HhccccceEEEEecccHHHHHHHHHHHHHHHHHhcc---CCeEEeeccchhhHhhhcchHHHHHHHHHhhhhhhhhhhhh
Confidence 88999999999999999999999865554 99999999999998888999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHhH
Q psy2600 105 GDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~~ 123 (158)
..||..+|..|+..+.+..
T Consensus 166 d~NV~~vF~YLaeK~~q~~ 184 (246)
T KOG4252|consen 166 DFNVMHVFAYLAEKLTQQK 184 (246)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 9999999999998776654
No 94
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.73 E-value=1.3e-16 Score=112.50 Aligned_cols=93 Identities=26% Similarity=0.356 Sum_probs=75.9
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcC-C-CCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRK-S-STPTYVALVANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSARTGD 106 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~-~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 106 (158)
+++|+|||++++.+|+....|...+..... . ...+|+++|+||+|+........++...+.+..+ ..++++||++|.
T Consensus 74 d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 153 (172)
T cd01862 74 DCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAKEAI 153 (172)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECcccccccccCHHHHHHHHHHcCCceEEEEECCCCC
Confidence 459999999999999999899888764322 1 1128999999999997544555677778888887 789999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy2600 107 NCWVNTRTPEINPLKY 122 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~ 122 (158)
|++++|+.+.+.+.+.
T Consensus 154 gv~~l~~~i~~~~~~~ 169 (172)
T cd01862 154 NVEQAFETIARKALEQ 169 (172)
T ss_pred CHHHHHHHHHHHHHhc
Confidence 9999999999988764
No 95
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.72 E-value=1.4e-16 Score=111.29 Aligned_cols=87 Identities=28% Similarity=0.338 Sum_probs=73.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
.+++++|||++++.+|+.+..|+..+..+.. .+ +|+++|+||+|+.. .....++...+++..++.++++||++|.|
T Consensus 73 ~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~~~~iv~nK~D~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 149 (161)
T cd01863 73 AQGVILVYDVTRRDTFTNLETWLNELETYSTNND--IVKMLVGNKIDKEN-REVTREEGLKFARKHNMLFIETSAKTRDG 149 (161)
T ss_pred CCEEEEEEECCCHHHHHhHHHHHHHHHHhCCCCC--CcEEEEEECCcccc-cccCHHHHHHHHHHcCCEEEEEecCCCCC
Confidence 4569999999999999999999999886542 33 89999999999973 34456678888888899999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 108 CWVNTRTPEIN 118 (158)
Q Consensus 108 i~~lf~~l~~~ 118 (158)
++++|+.+.+.
T Consensus 150 i~~~~~~~~~~ 160 (161)
T cd01863 150 VQQAFEELVEK 160 (161)
T ss_pred HHHHHHHHHHh
Confidence 99999998865
No 96
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.71 E-value=2.9e-16 Score=111.79 Aligned_cols=89 Identities=29% Similarity=0.252 Sum_probs=75.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||+++..+|+.+..|+..+.+.. ..+ .|+++|+||+|+...+.+...+...+++.++..++++||+++.|+.+
T Consensus 76 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 153 (180)
T cd04137 76 YILVYSVTSRKSFEVVKVIYDKILDMLGKES--VPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVEE 153 (180)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEEchhhhhcCccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 899999999999999999988887543 222 89999999999976555666667778888888999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|.++.+.+...
T Consensus 154 l~~~l~~~~~~~ 165 (180)
T cd04137 154 AFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHh
Confidence 999999988654
No 97
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.71 E-value=2.5e-16 Score=111.55 Aligned_cols=87 Identities=20% Similarity=0.298 Sum_probs=70.2
Q ss_pred eEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhC-C
Q psy2600 30 KIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLH-L 95 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~ 95 (158)
+++++|||++++++|+.+. .|...+++.... .|+++|+||+|+... ..+...++..+++..+ .
T Consensus 74 d~~i~v~~~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~ 150 (175)
T cd01870 74 DVILMCFSIDSPDSLENIPEKWTPEVKHFCPN---VPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAF 150 (175)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEeeChhcccChhhhhhhhhccCCCccHHHHHHHHHHcCCc
Confidence 4588999999999999985 688888764332 899999999998532 2344566777888777 4
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
.+++|||++|.|++++|+++++.+
T Consensus 151 ~~~~~Sa~~~~~v~~lf~~l~~~~ 174 (175)
T cd01870 151 GYMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEEeccccCcCHHHHHHHHHHHh
Confidence 799999999999999999998764
No 98
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.70 E-value=2.6e-16 Score=109.32 Aligned_cols=87 Identities=24% Similarity=0.232 Sum_probs=75.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
+.+++|||++++++++++..|+..+..... .. +|+++|+||+|+.....+..+.+..+++.++.+++++||+++.|+
T Consensus 72 ~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~~i 149 (160)
T cd00876 72 DGFILVYSITDRESFEEIKGYREQILRVKDDED--IPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINI 149 (160)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEECCcccccceecHHHHHHHHHHcCCcEEEeccCCCCCH
Confidence 349999999999999999999988885543 23 999999999999875666777888888888889999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 109 WVNTRTPEIN 118 (158)
Q Consensus 109 ~~lf~~l~~~ 118 (158)
.++|+.|++.
T Consensus 150 ~~l~~~l~~~ 159 (160)
T cd00876 150 DEVFKLLVRE 159 (160)
T ss_pred HHHHHHHHhh
Confidence 9999999875
No 99
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.70 E-value=3.2e-16 Score=108.20 Aligned_cols=85 Identities=31% Similarity=0.395 Sum_probs=73.6
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
++++|+|++++++++.+..|+..+....... .|+++++||+|+........++...+.+.++.+++++||+++.|+++
T Consensus 75 ~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~~i~~ 152 (159)
T cd00154 75 GAILVYDITNRESFENLDKWLKELKEYAPEN--IPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENVEE 152 (159)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEcccccccccccHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 3999999999999999999999998765333 89999999999964455567788888888889999999999999999
Q ss_pred HHHHHHH
Q psy2600 111 NTRTPEI 117 (158)
Q Consensus 111 lf~~l~~ 117 (158)
+|++|.+
T Consensus 153 ~~~~i~~ 159 (159)
T cd00154 153 LFQSLAE 159 (159)
T ss_pred HHHHHhC
Confidence 9998863
No 100
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.68 E-value=3.1e-16 Score=111.04 Aligned_cols=82 Identities=12% Similarity=0.079 Sum_probs=62.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhh-hcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-----hCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHL-NRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-----LHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----~~~~~~~~Sa~~~ 105 (158)
+|+|||++++.+|+....|+.++.. ..... +|+++|+||+|+... +..++...+... .+..++++||++|
T Consensus 80 ii~v~D~t~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~--~~~~~i~~~~~~~~~~~~~~~~~~~SAk~g 155 (168)
T cd04149 80 LIFVVDSADRDRIDEARQELHRIINDREMRD--ALLLVFANKQDLPDA--MKPHEIQEKLGLTRIRDRNWYVQPSCATSG 155 (168)
T ss_pred EEEEEeCCchhhHHHHHHHHHHHhcCHhhcC--CcEEEEEECcCCccC--CCHHHHHHHcCCCccCCCcEEEEEeeCCCC
Confidence 9999999999999999888877753 22222 899999999998642 344455554321 2346899999999
Q ss_pred CCHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEI 117 (158)
Q Consensus 106 ~~i~~lf~~l~~ 117 (158)
.||.++|++|.+
T Consensus 156 ~gv~~~~~~l~~ 167 (168)
T cd04149 156 DGLYEGLTWLSS 167 (168)
T ss_pred CChHHHHHHHhc
Confidence 999999999865
No 101
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.68 E-value=5.3e-16 Score=109.33 Aligned_cols=89 Identities=17% Similarity=0.198 Sum_probs=67.4
Q ss_pred eEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHHHHHHHHHhC--CeEEEEeCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLERHAKLAQSLH--LHSFAVSART 104 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~--~~~~~~Sa~~ 104 (158)
+.+++|||++++.+|+.+. .|+..++.... . +|+++|+||+|+.+.... ..+....+++.++ ..++++||++
T Consensus 72 d~~ilv~d~~~~~s~~~~~~~~~~~i~~~~~-~--~pviiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Sa~~ 148 (166)
T cd01893 72 NVICLVYSVDRPSTLERIRTKWLPLIRRLGV-K--VPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKT 148 (166)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHhCC-C--CCEEEEEEchhcccccchhHHHHHHHHHHHHHhcccEEEEecccc
Confidence 3499999999999999985 68888876543 2 999999999999654432 1223333444443 3799999999
Q ss_pred CCCHHHHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEINPLK 121 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~ 121 (158)
|.|++++|+.+.+.+.+
T Consensus 149 ~~~v~~lf~~~~~~~~~ 165 (166)
T cd01893 149 LINVSEVFYYAQKAVLH 165 (166)
T ss_pred ccCHHHHHHHHHHHhcC
Confidence 99999999999887653
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.68 E-value=4.1e-16 Score=110.33 Aligned_cols=90 Identities=13% Similarity=0.132 Sum_probs=69.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC------CeEEEEe
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH------LHSFAVS 101 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~------~~~~~~S 101 (158)
.+++++|||.+++.+|+.+..|+..+.... ... .|+++|+||+|+.. .++.++...+++..+ +.++++|
T Consensus 67 ad~ii~V~D~s~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~S 142 (169)
T cd04158 67 TQAVVFVVDSSHRDRVSEAHSELAKLLTEKELRD--ALLLIFANKQDVAG--ALSVEEMTELLSLHKLCCGRSWYIQGCD 142 (169)
T ss_pred CCEEEEEEeCCcHHHHHHHHHHHHHHhcChhhCC--CCEEEEEeCcCccc--CCCHHHHHHHhCCccccCCCcEEEEeCc
Confidence 356999999999999999999999887432 222 89999999999964 244556666554322 2578999
Q ss_pred CCCCCCHHHHHHHHHHHHHHh
Q psy2600 102 ARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~~~~~~ 122 (158)
|++|.||.++|++|++.+...
T Consensus 143 a~~g~gv~~~f~~l~~~~~~~ 163 (169)
T cd04158 143 ARSGMGLYEGLDWLSRQLVAA 163 (169)
T ss_pred CCCCCCHHHHHHHHHHHHhhc
Confidence 999999999999999876653
No 103
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.68 E-value=5.6e-16 Score=109.05 Aligned_cols=86 Identities=19% Similarity=0.237 Sum_probs=70.3
Q ss_pred CeEEEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc-----------cccHHHHHHHHHHhCC-
Q psy2600 29 GKIVIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQR-----------VVTLERHAKLAQSLHL- 95 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-----------~~~~~~~~~~~~~~~~- 95 (158)
.+++++|||++++.+|.... .|+..+...... .|+++|+||+|+.... .+..+++..+...++.
T Consensus 72 ~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ivv~nK~Dl~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 148 (171)
T cd00157 72 TDVFLICFSVDSPSSFENVKTKWIPEIRHYCPN---VPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAI 148 (171)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhhCCC---CCEEEEEccHHhhhchhhhhhcccCCCccCHHHHHHHHHHhCCe
Confidence 34599999999999998875 688887765543 9999999999986433 2345677778888886
Q ss_pred eEEEEeCCCCCCHHHHHHHHHH
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEI 117 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~ 117 (158)
.|+++||++|.|++++|+.+++
T Consensus 149 ~~~~~Sa~~~~gi~~l~~~i~~ 170 (171)
T cd00157 149 GYMECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEEEeecCCCCCHHHHHHHHhh
Confidence 8999999999999999999875
No 104
>KOG0393|consensus
Probab=99.67 E-value=9e-16 Score=110.19 Aligned_cols=89 Identities=19% Similarity=0.278 Sum_probs=78.8
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhC-CeE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLH-LHS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~ 97 (158)
+++||++++++||+++ .+|+.+++.+.+. +|+||||+|.||..+ ..++.+++..+++..| ..|
T Consensus 80 fl~cfsv~~p~S~~nv~~kW~pEi~~~cp~---vpiiLVGtk~DLr~d~~~~~~l~~~~~~~Vt~~~g~~lA~~iga~~y 156 (198)
T KOG0393|consen 80 FLLCFSVVSPESFENVKSKWIPEIKHHCPN---VPIILVGTKADLRDDPSTLEKLQRQGLEPVTYEQGLELAKEIGAVKY 156 (198)
T ss_pred EEEEEEcCChhhHHHHHhhhhHHHHhhCCC---CCEEEEeehHHhhhCHHHHHHHHhccCCcccHHHHHHHHHHhCccee
Confidence 8889999999999998 5899999988866 999999999999632 2467888999999999 679
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
+||||++..|+.++|+.+++......
T Consensus 157 ~EcSa~tq~~v~~vF~~a~~~~l~~~ 182 (198)
T KOG0393|consen 157 LECSALTQKGVKEVFDEAIRAALRPP 182 (198)
T ss_pred eeehhhhhCCcHHHHHHHHHHHhccc
Confidence 99999999999999999999887653
No 105
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.66 E-value=1.6e-15 Score=110.06 Aligned_cols=90 Identities=13% Similarity=0.134 Sum_probs=71.6
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCC-CccccHHHHHHHHH-HhCCeEEEEeCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEH-QRVVTLERHAKLAQ-SLHLHSFAVSARTG 105 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 105 (158)
.+++++|||++++.+|+.+..|+..+..... .+ +|+++|+||+|+.. .+.+.......... .++..++++||++|
T Consensus 71 ad~vilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~NK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~g 148 (198)
T cd04147 71 SDAFALVYAVDDPESFEEVERLREEILEVKEDKF--VPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDN 148 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEEccccccccccccHHHHHHHHHhhcCCcEEEecCCCC
Confidence 4569999999999999999999998886543 23 99999999999864 34444444444333 44678999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPL 120 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~ 120 (158)
.||.++|+++++.+.
T Consensus 149 ~gv~~l~~~l~~~~~ 163 (198)
T cd04147 149 ENVLEVFKELLRQAN 163 (198)
T ss_pred CCHHHHHHHHHHHhh
Confidence 999999999998775
No 106
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.66 E-value=1.3e-15 Score=109.22 Aligned_cols=83 Identities=16% Similarity=0.151 Sum_probs=62.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhh-hcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC--------eEEEEeC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHL-NRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL--------HSFAVSA 102 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa 102 (158)
+|+|||++++++|+....|+..+.. ..... +|+++|+||+|+.... .. ..+.+.+++ .++++||
T Consensus 88 iI~V~D~s~~~s~~~~~~~l~~~l~~~~~~~--~piilv~NK~Dl~~~~--~~---~~~~~~l~l~~~~~~~~~~~~~Sa 160 (181)
T PLN00223 88 LIFVVDSNDRDRVVEARDELHRMLNEDELRD--AVLLVFANKQDLPNAM--NA---AEITDKLGLHSLRQRHWYIQSTCA 160 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHhcCHhhCC--CCEEEEEECCCCCCCC--CH---HHHHHHhCccccCCCceEEEeccC
Confidence 9999999999999998887777652 21122 8999999999986532 22 233333332 3568999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~~ 121 (158)
++|+||.++|++|.+.+..
T Consensus 161 ~~g~gv~e~~~~l~~~~~~ 179 (181)
T PLN00223 161 TSGEGLYEGLDWLSNNIAN 179 (181)
T ss_pred CCCCCHHHHHHHHHHHHhh
Confidence 9999999999999987754
No 107
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.66 E-value=3.8e-16 Score=111.22 Aligned_cols=84 Identities=13% Similarity=0.096 Sum_probs=61.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHH-----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLA-----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 105 (158)
+|+|||++++.+|+....|+..+... .... +|+++|+||+|+.... ..++..... ....+.++++||++|
T Consensus 84 ii~v~D~t~~~s~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 159 (175)
T smart00177 84 LIFVVDSNDRDRIDEAREELHRMLNEDELRD--AVILVFANKQDLPDAM--KAAEITEKLGLHSIRDRNWYIQPTCATSG 159 (175)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhhCHhhcC--CcEEEEEeCcCcccCC--CHHHHHHHhCccccCCCcEEEEEeeCCCC
Confidence 99999999999999998888877532 2222 8999999999996432 222222211 112234678999999
Q ss_pred CCHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINP 119 (158)
Q Consensus 106 ~~i~~lf~~l~~~~ 119 (158)
.||.++|++|.+.+
T Consensus 160 ~gv~e~~~~l~~~~ 173 (175)
T smart00177 160 DGLYEGLTWLSNNL 173 (175)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999999998764
No 108
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.65 E-value=3.1e-16 Score=110.61 Aligned_cols=87 Identities=13% Similarity=0.006 Sum_probs=67.7
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccH----HHHHHHHHHhCCeEEEEeCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTL----ERHAKLAQSLHLHSFAVSAR 103 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~----~~~~~~~~~~~~~~~~~Sa~ 103 (158)
.++++++|||.+++.+|.....|+.++..... + +|+++|+||+|+...+.+.. ..+..+++..++.++++||+
T Consensus 67 ~ad~ii~V~D~t~~~s~~~~~~~l~~~~~~~~-~--~piilv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~~Sa~ 143 (164)
T cd04162 67 GSQGLIFVVDSADSERLPLARQELHQLLQHPP-D--LPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLD 143 (164)
T ss_pred hCCEEEEEEECCCHHHHHHHHHHHHHHHhCCC-C--CcEEEEEeCcCCcCCCCHHHHHHHhCChhhcCCCceEEEEeeec
Confidence 34569999999999999999999888864332 2 99999999999976544321 12345556667889999999
Q ss_pred C------CCCHHHHHHHHHH
Q psy2600 104 T------GDNCWVNTRTPEI 117 (158)
Q Consensus 104 ~------~~~i~~lf~~l~~ 117 (158)
+ ++||.++|+.++.
T Consensus 144 ~~~s~~~~~~v~~~~~~~~~ 163 (164)
T cd04162 144 DDGSPSRMEAVKDLLSQLIN 163 (164)
T ss_pred CCCChhHHHHHHHHHHHHhc
Confidence 8 8999999998864
No 109
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.65 E-value=4e-15 Score=109.20 Aligned_cols=86 Identities=21% Similarity=0.273 Sum_probs=70.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||+++..+|..+..|+..+...... +|+++++||+|+... .+.. ....+++..++.++++||++|.|++++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~~i~lv~nK~Dl~~~-~~~~-~~~~~~~~~~~~~~e~Sa~~~~~v~~~ 159 (215)
T PTZ00132 85 AIIMFDVTSRITYKNVPNWHRDIVRVCEN---IPIVLVGNKVDVKDR-QVKA-RQITFHRKKNLQYYDISAKSNYNFEKP 159 (215)
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECccCccc-cCCH-HHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 89999999999999999999998855432 899999999998642 2332 334566777889999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|.++++.+...
T Consensus 160 f~~ia~~l~~~ 170 (215)
T PTZ00132 160 FLWLARRLTND 170 (215)
T ss_pred HHHHHHHHhhc
Confidence 99999988653
No 110
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.64 E-value=5.4e-16 Score=108.78 Aligned_cols=85 Identities=16% Similarity=0.116 Sum_probs=60.7
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH----HhCCeEEEEeCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ----SLHLHSFAVSART 104 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~ 104 (158)
+++|||||++++.+|+.+..|+..+... .... +|+++++||+|+..... ..+....+.. ..++.++++||++
T Consensus 69 d~~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~-~~~i~~~~~~~~~~~~~~~~~~~Sak~ 145 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRD--AVLLVFANKQDLPNAMS-AAEVTDKLGLHSLRNRNWYIQATCATS 145 (159)
T ss_pred CEEEEEEeCCCHHHHHHHHHHHHHHHhcHHhcC--CCEEEEEECCCCCCCCC-HHHHHHHhCccccCCCCEEEEEeeCCC
Confidence 5599999999999999998888777532 2222 89999999999964321 1122222211 1234578999999
Q ss_pred CCCHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEI 117 (158)
Q Consensus 105 ~~~i~~lf~~l~~ 117 (158)
|.||.++|++|.+
T Consensus 146 g~gv~~~~~~l~~ 158 (159)
T cd04150 146 GDGLYEGLDWLSN 158 (159)
T ss_pred CCCHHHHHHHHhc
Confidence 9999999999864
No 111
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.64 E-value=8e-16 Score=110.34 Aligned_cols=87 Identities=14% Similarity=0.104 Sum_probs=62.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHH-HH----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAK-LA----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~ 105 (158)
+|+|||++++.+|++...|+.++... .... +|+++|+||+|+.... ...+... +. +...+.++++||++|
T Consensus 88 iI~v~D~t~~~s~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~--~~~~i~~~l~~~~~~~~~~~~~~~Sa~tg 163 (182)
T PTZ00133 88 LIFVVDSNDRERIGDAREELERMLSEDELRD--AVLLVFANKQDLPNAM--STTEVTEKLGLHSVRQRNWYIQGCCATTA 163 (182)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhCHhhcC--CCEEEEEeCCCCCCCC--CHHHHHHHhCCCcccCCcEEEEeeeCCCC
Confidence 99999999999999988777776522 1122 8999999999986422 2222211 11 111234679999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2600 106 DNCWVNTRTPEINPLKY 122 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~ 122 (158)
.|+.++|++|.+.+.+.
T Consensus 164 ~gv~e~~~~l~~~i~~~ 180 (182)
T PTZ00133 164 QGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999887654
No 112
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.63 E-value=3.1e-15 Score=106.08 Aligned_cols=82 Identities=17% Similarity=0.119 Sum_probs=63.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-----HhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-----SLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+....|+..+... .... +|+++|+||+|+.+.. ..++...+.+ ..+++++++||++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 160 (173)
T cd04154 85 LIWVVDSSDRLRLDDCKRELKELLQEERLAG--ATLLILANKQDLPGAL--SEEEIREALELDKISSHHWRIQPCSAVTG 160 (173)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhcC--CCEEEEEECcccccCC--CHHHHHHHhCccccCCCceEEEeccCCCC
Confidence 89999999999999988888877532 2122 8999999999986532 3344444432 23567999999999
Q ss_pred CCHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEI 117 (158)
Q Consensus 106 ~~i~~lf~~l~~ 117 (158)
.|++++|++++.
T Consensus 161 ~gi~~l~~~l~~ 172 (173)
T cd04154 161 EGLLQGIDWLVD 172 (173)
T ss_pred cCHHHHHHHHhc
Confidence 999999999864
No 113
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.61 E-value=1.1e-14 Score=104.46 Aligned_cols=90 Identities=18% Similarity=0.133 Sum_probs=67.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH--Hh----CCeEEEEe
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ--SL----HLHSFAVS 101 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~--~~----~~~~~~~S 101 (158)
.+++++|+|++++.+++.+..|+.++.... ..+ .|+++|+||+|+... ....+...+.. .. +..++++|
T Consensus 76 ~d~ii~v~D~~~~~~~~~~~~~~~~i~~~~~~~~--~p~iiv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~S 151 (183)
T cd04152 76 TDGIVFVVDSVDVERMEEAKTELHKITRFSENQG--VPVLVLANKQDLPNA--LSVSEVEKLLALHELSASTPWHVQPAC 151 (183)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhhhhcCC--CcEEEEEECcCcccc--CCHHHHHHHhCccccCCCCceEEEEee
Confidence 466999999999999999988988877432 223 899999999998642 22333444332 11 24578999
Q ss_pred CCCCCCHHHHHHHHHHHHHHh
Q psy2600 102 ARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~~~~~~ 122 (158)
|++|.||+++|++|++.+.+.
T Consensus 152 A~~~~gi~~l~~~l~~~l~~~ 172 (183)
T cd04152 152 AIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred cccCCCHHHHHHHHHHHHHHH
Confidence 999999999999999888654
No 114
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.61 E-value=9.3e-15 Score=113.89 Aligned_cols=90 Identities=19% Similarity=0.037 Sum_probs=72.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|+++.++++++..|.+++..+......+|+++|+||+|+.....+.......+.+..+..++++||+++.||+++
T Consensus 240 lI~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~~~~~~~~~~~~~~~~~~~i~~iSAktg~GI~eL 319 (335)
T PRK12299 240 LLHLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEEEREKRAALELAALGGPVFLISAVTGEGLDEL 319 (335)
T ss_pred EEEEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCchhHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 89999999888899999999999876543223899999999998754433333444455556788999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|+++.+.+.+
T Consensus 320 ~~~L~~~l~~ 329 (335)
T PRK12299 320 LRALWELLEE 329 (335)
T ss_pred HHHHHHHHHh
Confidence 9999988765
No 115
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.60 E-value=5.7e-15 Score=101.31 Aligned_cols=75 Identities=17% Similarity=0.177 Sum_probs=58.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.++.. ..|...+ . .|+++|+||+|+... ....++...+++..+. +++++||++|.|+++
T Consensus 66 vilv~d~~~~~s~~~-~~~~~~~---~-----~p~ilv~NK~Dl~~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 135 (142)
T TIGR02528 66 IALVQSATDPESRFP-PGFASIF---V-----KPVIGLVTKIDLAEA-DVDIERAKELLETAGAEPIFEISSVDEQGLEA 135 (142)
T ss_pred EEEEecCCCCCcCCC-hhHHHhc---c-----CCeEEEEEeeccCCc-ccCHHHHHHHHHHcCCCcEEEEecCCCCCHHH
Confidence 899999999998866 3454332 1 688999999998642 3345566777777775 799999999999999
Q ss_pred HHHHHH
Q psy2600 111 NTRTPE 116 (158)
Q Consensus 111 lf~~l~ 116 (158)
+|+.+.
T Consensus 136 l~~~l~ 141 (142)
T TIGR02528 136 LVDYLN 141 (142)
T ss_pred HHHHHh
Confidence 999874
No 116
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.58 E-value=6.2e-15 Score=104.79 Aligned_cols=82 Identities=17% Similarity=0.103 Sum_probs=60.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHH-HHHH----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERH-AKLA----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~----~~~~~~~~~~Sa~~~ 105 (158)
+++|+|++++++|.....|+..+.+.. ... +|+++++||+|+... ...++. ..+. +..++.++++||++|
T Consensus 86 vi~V~D~s~~~~~~~~~~~l~~~~~~~~~~~--~p~viv~NK~Dl~~~--~~~~~i~~~l~~~~~~~~~~~~~~~SA~~g 161 (174)
T cd04153 86 VILVIDSTDRERLPLTKEELYKMLAHEDLRK--AVLLVLANKQDLKGA--MTPAEISESLGLTSIRDHTWHIQGCCALTG 161 (174)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhcC--CCEEEEEECCCCCCC--CCHHHHHHHhCcccccCCceEEEecccCCC
Confidence 999999999999998888777775322 122 899999999998642 122222 2222 223457899999999
Q ss_pred CCHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEI 117 (158)
Q Consensus 106 ~~i~~lf~~l~~ 117 (158)
.||+++|++|++
T Consensus 162 ~gi~e~~~~l~~ 173 (174)
T cd04153 162 EGLPEGLDWIAS 173 (174)
T ss_pred CCHHHHHHHHhc
Confidence 999999999875
No 117
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.57 E-value=2.2e-14 Score=103.02 Aligned_cols=83 Identities=14% Similarity=0.114 Sum_probs=64.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH----------------hC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS----------------LH 94 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------------~~ 94 (158)
+++|+|.++..+|.....|+..+.... ... .|+++++||+|+.. .+..++.+.+... ..
T Consensus 90 iilV~D~~~~~s~~~~~~~~~~i~~~~~~~~--~pvivv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (190)
T cd00879 90 IVFLVDAADPERFQESKEELDSLLSDEELAN--VPFLILGNKIDLPG--AVSEEELRQALGLYGTTTGKGVSLKVSGIRP 165 (190)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcCccccC--CCEEEEEeCCCCCC--CcCHHHHHHHhCcccccccccccccccCcee
Confidence 889999999999998888888876422 222 89999999999863 3445555555432 12
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
..+++|||+++.|+.++|++|.+.
T Consensus 166 ~~~~~~Sa~~~~gv~e~~~~l~~~ 189 (190)
T cd00879 166 IEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred EEEEEeEecCCCChHHHHHHHHhh
Confidence 458999999999999999999864
No 118
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.57 E-value=1.1e-14 Score=101.64 Aligned_cols=85 Identities=18% Similarity=0.107 Sum_probs=61.8
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHH------HHHhCCeEEEEe
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKL------AQSLHLHSFAVS 101 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~------~~~~~~~~~~~S 101 (158)
.+.+++|+|.+++.+|.....|+.++.+.. ..+ .|+++|+||+|+.... ...+.... ....++++++||
T Consensus 68 ~~~iv~v~D~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~~S 143 (160)
T cd04156 68 TDGLVYVVDSSDEARLDESQKELKHILKNEHIKG--VPVVLLANKQDLPGAL--TAEEITRRFKLKKYCSDRDWYVQPCS 143 (160)
T ss_pred CCEEEEEEECCcHHHHHHHHHHHHHHHhchhhcC--CCEEEEEECcccccCc--CHHHHHHHcCCcccCCCCcEEEEecc
Confidence 456999999999999999988888876321 122 9999999999986421 12222211 112235689999
Q ss_pred CCCCCCHHHHHHHHHH
Q psy2600 102 ARTGDNCWVNTRTPEI 117 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~ 117 (158)
|++|.||+++|+.|.+
T Consensus 144 a~~~~gv~~~~~~i~~ 159 (160)
T cd04156 144 AVTGEGLAEAFRKLAS 159 (160)
T ss_pred cccCCChHHHHHHHhc
Confidence 9999999999999865
No 119
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.57 E-value=2.6e-14 Score=100.42 Aligned_cols=85 Identities=13% Similarity=0.034 Sum_probs=64.8
Q ss_pred eEEEEEEECCChhHH--hhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQSF--HSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 30 k~~i~v~d~~~~~s~--~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
+++++|+|+++..++ +....|+..++.... + .|+++|+||+|+.....+. ....+.+..+..++++||++|.|
T Consensus 81 d~~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~-~--~pvilv~NK~Dl~~~~~~~--~~~~~~~~~~~~~~~~Sa~~~~g 155 (168)
T cd01897 81 AAVLFLFDPSETCGYSLEEQLSLFEEIKPLFK-N--KPVIVVLNKIDLLTFEDLS--EIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred CcEEEEEeCCcccccchHHHHHHHHHHHhhcC-c--CCeEEEEEccccCchhhHH--HHHHhhhhccCceEEEEecccCC
Confidence 678999999987654 555678888875432 2 8999999999996544332 24445555567899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINP 119 (158)
Q Consensus 108 i~~lf~~l~~~~ 119 (158)
++++|+++.+.+
T Consensus 156 i~~l~~~l~~~~ 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHh
Confidence 999999998865
No 120
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.56 E-value=1.4e-14 Score=101.04 Aligned_cols=88 Identities=17% Similarity=0.143 Sum_probs=62.1
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHH---HH--HhCCeEEEEe
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKL---AQ--SLHLHSFAVS 101 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~--~~~~~~~~~S 101 (158)
-.+++|+|+|++++.+|.....|+..+.+... ....+|+++|+||+|+..... ..+.... .. .....++++|
T Consensus 68 ~~d~ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~~~--~~~~~~~l~~~~~~~~~~~~~~~S 145 (162)
T cd04157 68 NIQGIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALT--AVKITQLLGLENIKDKPWHIFASN 145 (162)
T ss_pred cCCEEEEEEeCCcHHHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCCCC--HHHHHHHhCCccccCceEEEEEee
Confidence 34569999999999999988888887764211 111299999999999864321 2222221 11 1124589999
Q ss_pred CCCCCCHHHHHHHHHH
Q psy2600 102 ARTGDNCWVNTRTPEI 117 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~ 117 (158)
|++|.|++++|++|.+
T Consensus 146 a~~g~gv~~~~~~l~~ 161 (162)
T cd04157 146 ALTGEGLDEGVQWLQA 161 (162)
T ss_pred CCCCCchHHHHHHHhc
Confidence 9999999999999865
No 121
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.55 E-value=9.7e-14 Score=101.20 Aligned_cols=93 Identities=11% Similarity=0.103 Sum_probs=67.0
Q ss_pred cceEEEEEEECCCC-----------CCeEEEEEEECCChhHHhhHHHHHHHHhhhcC-----------------CCCCcE
Q psy2600 14 YEIQLKVVLLGDPS-----------CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRK-----------------SSTPTY 65 (158)
Q Consensus 14 ~~~~~ki~~~G~~~-----------vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-----------------~~~~~p 65 (158)
..+.+.+|..+... -++++|+|||++++.||+++..|+.++..... ...++|
T Consensus 52 ~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~P 131 (202)
T cd04102 52 KTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIP 131 (202)
T ss_pred cEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcChHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCce
Confidence 34555666554431 34669999999999999999999999975321 111389
Q ss_pred EEEEEeCCCCCCCccccHHH----HHHHHHHhCCeEEEEeCCCCC
Q psy2600 66 VALVANKGDMEHQRVVTLER----HAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 66 iilv~nK~Dl~~~~~~~~~~----~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
+++||||+|+...+.+.... ...++++.+++.++.+|.+..
T Consensus 132 iilVGnK~Dl~~~r~~~~~~~~~~~~~ia~~~~~~~i~~~c~~~~ 176 (202)
T cd04102 132 LLVIGTKLDQIPEKESSGNLVLTARGFVAEQGNAEEINLNCTNGR 176 (202)
T ss_pred EEEEEECccchhhcccchHHHhhHhhhHHHhcCCceEEEecCCcc
Confidence 99999999997655444432 334677889999999998653
No 122
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.55 E-value=2.4e-14 Score=99.72 Aligned_cols=84 Identities=15% Similarity=0.064 Sum_probs=62.8
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-----HhCCeEEEEeCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-----SLHLHSFAVSAR 103 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 103 (158)
+.+++|||++++.+|.....|+..+.... ... .|+++|+||+|+.... ..++...... ....+++++||+
T Consensus 68 ~~~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~--~piiiv~nK~D~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 143 (158)
T cd00878 68 NGIIFVVDSSDRERIEEAKEELHKLLNEEELKG--VPLLIFANKQDLPGAL--SVSELIEKLGLEKILGRRWHIQPCSAV 143 (158)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHhCcccCC--CcEEEEeeccCCcccc--CHHHHHHhhChhhccCCcEEEEEeeCC
Confidence 44999999999999999988888876432 222 8999999999986533 1222222222 234579999999
Q ss_pred CCCCHHHHHHHHHH
Q psy2600 104 TGDNCWVNTRTPEI 117 (158)
Q Consensus 104 ~~~~i~~lf~~l~~ 117 (158)
+|.|++++|+.|..
T Consensus 144 ~~~gv~~~~~~l~~ 157 (158)
T cd00878 144 TGDGLDEGLDWLLQ 157 (158)
T ss_pred CCCCHHHHHHHHhh
Confidence 99999999999875
No 123
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.54 E-value=7.1e-14 Score=98.28 Aligned_cols=89 Identities=17% Similarity=0.139 Sum_probs=68.9
Q ss_pred CeEEEEEEECCCh-hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-hCCeEEEEeCCCCC
Q psy2600 29 GKIVIFMYDITSG-QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-LHLHSFAVSARTGD 106 (158)
Q Consensus 29 gk~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~~~ 106 (158)
.+.+++|+|+++. ++++++..|.+.+.........+|+++|+||+|+...... ......+... .+.+++++||+++.
T Consensus 79 ~d~vi~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~ 157 (170)
T cd01898 79 TRLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEEL-FELLKELLKELWGKPVFPISALTGE 157 (170)
T ss_pred CCEEEEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCchhh-HHHHHHHHhhCCCCCEEEEecCCCC
Confidence 4679999999998 7999999999998865432112899999999998654333 2334445555 36789999999999
Q ss_pred CHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEIN 118 (158)
Q Consensus 107 ~i~~lf~~l~~~ 118 (158)
|+.++|+++.+.
T Consensus 158 gi~~l~~~i~~~ 169 (170)
T cd01898 158 GLDELLRKLAEL 169 (170)
T ss_pred CHHHHHHHHHhh
Confidence 999999998865
No 124
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.53 E-value=3.2e-14 Score=99.28 Aligned_cols=85 Identities=16% Similarity=0.084 Sum_probs=59.0
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHh-hhcCCCCCcEEEEEEeCCCCCCCccccHHHH-HHHHH----HhCCeEEEEeC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERH-AKLAQ----SLHLHSFAVSA 102 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~----~~~~~~~~~Sa 102 (158)
.+.+++|+|.+++.++.....|+..+. ...... +|+++|+||+|+.+... ..+. ..+.. ..+..++++||
T Consensus 67 ~~~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~piiiv~nK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~Sa 142 (158)
T cd04151 67 TDAIIYVVDSTDRDRLGTAKEELHAMLEEEELKG--AVLLVFANKQDMPGALS--EAEISEKLGLSELKDRTWSIFKTSA 142 (158)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhchhhcC--CcEEEEEeCCCCCCCCC--HHHHHHHhCccccCCCcEEEEEeec
Confidence 455999999999988887766665543 222122 89999999999864321 1222 11211 11246999999
Q ss_pred CCCCCHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEI 117 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~ 117 (158)
+++.|+.++|++|++
T Consensus 143 ~~~~gi~~l~~~l~~ 157 (158)
T cd04151 143 IKGEGLDEGMDWLVN 157 (158)
T ss_pred cCCCCHHHHHHHHhc
Confidence 999999999999875
No 125
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.52 E-value=3.5e-14 Score=100.32 Aligned_cols=88 Identities=16% Similarity=0.094 Sum_probs=63.8
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccH-HH---HHHHHHHhC--CeEEEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTL-ER---HAKLAQSLH--LHSFAV 100 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~-~~---~~~~~~~~~--~~~~~~ 100 (158)
..+++++|||++++.+|+.+..|+..+..... .+ +|+++|+||+|+........ .. ...+++..+ +.+++|
T Consensus 66 ~a~~ii~V~D~s~~~s~~~~~~~l~~l~~~~~~~~--~piliv~NK~Dl~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~ 143 (167)
T cd04161 66 EAHGLVFVVDSSDDDRVQEVKEILRELLQHPRVSG--KPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPC 143 (167)
T ss_pred CCCEEEEEEECCchhHHHHHHHHHHHHHcCccccC--CcEEEEEeCCCCcCCCCHHHHHHhcCcccccCCCCceEEEEEe
Confidence 44569999999999999999999998874321 23 89999999999975442111 11 122332223 457789
Q ss_pred eCCCC------CCHHHHHHHHHH
Q psy2600 101 SARTG------DNCWVNTRTPEI 117 (158)
Q Consensus 101 Sa~~~------~~i~~lf~~l~~ 117 (158)
||++| .|+.+.|+||..
T Consensus 144 Sa~~g~~~~~~~g~~~~~~wl~~ 166 (167)
T cd04161 144 SAIEGLGKKIDPSIVEGLRWLLA 166 (167)
T ss_pred EceeCCCCccccCHHHHHHHHhc
Confidence 99998 899999999974
No 126
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.51 E-value=1.2e-13 Score=97.01 Aligned_cols=85 Identities=18% Similarity=0.177 Sum_probs=64.5
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-------hCCeEEEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-------LHLHSFAV 100 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~~~~~~~ 100 (158)
.+++++|+|+++.+++.....|+..+.+.. ..+ +|+++|+||+|+... ....+...+.+. .+.+++++
T Consensus 74 ~~~~v~vvd~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~D~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (167)
T cd04160 74 CHAIIYVIDSTDRERFEESKSALEKVLRNEALEG--VPLLILANKQDLPDA--LSVEEIKEVFQDKAEEIGRRDCLVLPV 149 (167)
T ss_pred CCEEEEEEECchHHHHHHHHHHHHHHHhChhhcC--CCEEEEEEccccccC--CCHHHHHHHhccccccccCCceEEEEe
Confidence 467999999999999999888888876422 222 899999999998653 233344444332 23579999
Q ss_pred eCCCCCCHHHHHHHHHH
Q psy2600 101 SARTGDNCWVNTRTPEI 117 (158)
Q Consensus 101 Sa~~~~~i~~lf~~l~~ 117 (158)
||++|.|++++|++|.+
T Consensus 150 Sa~~g~gv~e~~~~l~~ 166 (167)
T cd04160 150 SALEGTGVREGIEWLVE 166 (167)
T ss_pred eCCCCcCHHHHHHHHhc
Confidence 99999999999999875
No 127
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.48 E-value=4e-13 Score=104.59 Aligned_cols=88 Identities=16% Similarity=0.072 Sum_probs=68.8
Q ss_pred EEEEEEECCCh---hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 31 IVIFMYDITSG---QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 31 ~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
.+++|+|+++. ++++++..|.+++..+.......|+++|+||+|+..... ..+..+.+++.++..++++||+++.|
T Consensus 238 ~ll~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~~~-~~~~~~~l~~~~~~~vi~iSAktg~G 316 (329)
T TIGR02729 238 VLLHLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDEEE-LAELLKELKKALGKPVFPISALTGEG 316 (329)
T ss_pred EEEEEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCChHH-HHHHHHHHHHHcCCcEEEEEccCCcC
Confidence 39999999986 688888899998886654222389999999999965432 23344556666678899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINP 119 (158)
Q Consensus 108 i~~lf~~l~~~~ 119 (158)
|+++++.+.+.+
T Consensus 317 I~eL~~~I~~~l 328 (329)
T TIGR02729 317 LDELLYALAELL 328 (329)
T ss_pred HHHHHHHHHHHh
Confidence 999999998764
No 128
>KOG3883|consensus
Probab=99.48 E-value=6.3e-13 Score=91.16 Aligned_cols=90 Identities=13% Similarity=0.150 Sum_probs=75.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++||++.|++||+.+.....++..... ...+||++.+||+|+.+.+.+....+..|++.-.+..++++|.+...+-+-
T Consensus 88 fVLVYs~~d~eSf~rv~llKk~Idk~Kd-KKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta~dR~sL~ep 166 (198)
T KOG3883|consen 88 FVLVYSPMDPESFQRVELLKKEIDKHKD-KKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTAMDRPSLYEP 166 (198)
T ss_pred EEEEecCCCHHHHHHHHHHHHHHhhccc-cccccEEEEechhhcccchhcCHHHHHHHHhhhheeEEEEEeccchhhhhH
Confidence 9999999999999987654444442221 112999999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|..+...+.+.
T Consensus 167 f~~l~~rl~~p 177 (198)
T KOG3883|consen 167 FTYLASRLHQP 177 (198)
T ss_pred HHHHHHhccCC
Confidence 99999887654
No 129
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.47 E-value=3.1e-13 Score=98.23 Aligned_cols=81 Identities=16% Similarity=0.062 Sum_probs=62.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|.+++.++.....|...+......+ +|+++|+||+|+...... .......+.+++++||+++.|+.++
T Consensus 124 ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~--~~viiV~NK~Dl~~~~~~-----~~~~~~~~~~~~~~Sa~~~~gi~~l 196 (204)
T cd01878 124 LLHVVDASDPDYEEQIETVEKVLKELGAED--IPMILVLNKIDLLDDEEL-----EERLEAGRPDAVFISAKTGEGLDEL 196 (204)
T ss_pred EEEEEECCCCChhhHHHHHHHHHHHcCcCC--CCEEEEEEccccCChHHH-----HHHhhcCCCceEEEEcCCCCCHHHH
Confidence 899999999888888877877776544333 899999999998643221 1334445677999999999999999
Q ss_pred HHHHHHHH
Q psy2600 112 TRTPEINP 119 (158)
Q Consensus 112 f~~l~~~~ 119 (158)
|++|.+.+
T Consensus 197 ~~~L~~~~ 204 (204)
T cd01878 197 LEAIEELL 204 (204)
T ss_pred HHHHHhhC
Confidence 99998653
No 130
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.47 E-value=5.1e-13 Score=95.84 Aligned_cols=83 Identities=11% Similarity=0.030 Sum_probs=61.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH------------hCCeEE
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS------------LHLHSF 98 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~ 98 (158)
+++|+|++++.+|.....|+.++.+.. ..+ +|+++|+||+|+.. .++.++......- ....++
T Consensus 88 ii~vvD~~~~~~~~~~~~~l~~l~~~~~~~~--~piliv~NK~Dl~~--~~~~~~i~~~l~l~~~~~~~~~~~~~~~~i~ 163 (184)
T smart00178 88 IVYLVDAYDKERFAESKRELDALLSDEELAT--VPFLILGNKIDAPY--AASEDELRYALGLTNTTGSKGKVGVRPLEVF 163 (184)
T ss_pred EEEEEECCcHHHHHHHHHHHHHHHcChhhcC--CCEEEEEeCccccC--CCCHHHHHHHcCCCcccccccccCCceeEEE
Confidence 999999999999999888888776321 122 89999999999864 2334444432210 123589
Q ss_pred EEeCCCCCCHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~ 118 (158)
+|||+++.|+.+++++|.+.
T Consensus 164 ~~Sa~~~~g~~~~~~wl~~~ 183 (184)
T smart00178 164 MCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EeecccCCChHHHHHHHHhh
Confidence 99999999999999999764
No 131
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.44 E-value=1.3e-12 Score=92.25 Aligned_cols=79 Identities=20% Similarity=0.203 Sum_probs=58.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC--------eEEEEeC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL--------HSFAVSA 102 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--------~~~~~Sa 102 (158)
+++|+|.++..++.....|+..+... .... +|+++++||+|+..... ...+.+..++ .++++||
T Consensus 85 ii~v~D~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~~-----~~~i~~~l~~~~~~~~~~~~~~~Sa 157 (173)
T cd04155 85 LIYVIDSADKKRLEEAGAELVELLEEEKLAG--VPVLVFANKQDLATAAP-----AEEIAEALNLHDLRDRTWHIQACSA 157 (173)
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhChhhcC--CCEEEEEECCCCccCCC-----HHHHHHHcCCcccCCCeEEEEEeEC
Confidence 89999999999998887777666532 2222 89999999999854221 2223333332 4689999
Q ss_pred CCCCCHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEI 117 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~ 117 (158)
++|.|++++|++|++
T Consensus 158 ~~~~gi~~~~~~l~~ 172 (173)
T cd04155 158 KTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCHHHHHHHHhc
Confidence 999999999999975
No 132
>KOG1673|consensus
Probab=99.44 E-value=1.8e-12 Score=89.20 Aligned_cols=87 Identities=20% Similarity=0.213 Sum_probs=71.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC-----CCccccHHHHHHHHHHhCCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME-----HQRVVTLERHAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~-----~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
++|+||++.+..+.++..|+...+..+... +| |+||+|.|+. +.++.-..+++.+++..+.+.|++|+..+.
T Consensus 96 IlFmFDLt~r~TLnSi~~WY~QAr~~NktA--iP-ilvGTKyD~fi~lp~e~Q~~I~~qar~YAk~mnAsL~F~Sts~sI 172 (205)
T KOG1673|consen 96 ILFMFDLTRRSTLNSIKEWYRQARGLNKTA--IP-ILVGTKYDLFIDLPPELQETISRQARKYAKVMNASLFFCSTSHSI 172 (205)
T ss_pred EEEEEecCchHHHHHHHHHHHHHhccCCcc--ce-EEeccchHhhhcCCHHHHHHHHHHHHHHHHHhCCcEEEeeccccc
Confidence 889999999999999999999999666554 77 7789999963 222223345777888889999999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
||..+|..++..+..
T Consensus 173 Nv~KIFK~vlAklFn 187 (205)
T KOG1673|consen 173 NVQKIFKIVLAKLFN 187 (205)
T ss_pred cHHHHHHHHHHHHhC
Confidence 999999998887765
No 133
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.44 E-value=1e-12 Score=92.20 Aligned_cols=83 Identities=12% Similarity=0.007 Sum_probs=63.0
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC--eEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL--HSFAVSARTGDN 107 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~--~~~~~Sa~~~~~ 107 (158)
+.+++|+|+++..++.. .|+..+. . . +|+++++||+|+... ..+....+++..+. +++++||+++.|
T Consensus 66 d~il~v~d~~~~~s~~~--~~~~~~~---~-~--~~ii~v~nK~Dl~~~---~~~~~~~~~~~~~~~~p~~~~Sa~~g~g 134 (158)
T PRK15467 66 DMLIYVHGANDPESRLP--AGLLDIG---V-S--KRQIAVISKTDMPDA---DVAATRKLLLETGFEEPIFELNSHDPQS 134 (158)
T ss_pred CEEEEEEeCCCcccccC--HHHHhcc---C-C--CCeEEEEEccccCcc---cHHHHHHHHHHcCCCCCEEEEECCCccC
Confidence 34999999998877633 4555432 1 1 789999999998642 34556677777774 799999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q psy2600 108 CWVNTRTPEINPLKYL 123 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~ 123 (158)
|+++|+.+.+.+....
T Consensus 135 i~~l~~~l~~~~~~~~ 150 (158)
T PRK15467 135 VQQLVDYLASLTKQEE 150 (158)
T ss_pred HHHHHHHHHHhchhhh
Confidence 9999999998876543
No 134
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.43 E-value=2.9e-12 Score=91.35 Aligned_cols=84 Identities=15% Similarity=0.143 Sum_probs=63.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH------HhCCeEEEEeCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ------SLHLHSFAVSART 104 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~------~~~~~~~~~Sa~~ 104 (158)
+|||+|.++.+.+......+.++... .... +|+++++||+|++.. ...++...... ...+.++.|||.+
T Consensus 85 iIfVvDssd~~~l~e~~~~L~~ll~~~~~~~--~piLIl~NK~D~~~~--~~~~~i~~~l~l~~l~~~~~~~v~~~sa~~ 160 (175)
T PF00025_consen 85 IIFVVDSSDPERLQEAKEELKELLNDPELKD--IPILILANKQDLPDA--MSEEEIKEYLGLEKLKNKRPWSVFSCSAKT 160 (175)
T ss_dssp EEEEEETTGGGGHHHHHHHHHHHHTSGGGTT--SEEEEEEESTTSTTS--STHHHHHHHTTGGGTTSSSCEEEEEEBTTT
T ss_pred eEEEEecccceeecccccchhhhcchhhccc--ceEEEEeccccccCc--chhhHHHhhhhhhhcccCCceEEEeeeccC
Confidence 99999999999998888777777632 2223 999999999998652 33444443322 2235589999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEINP 119 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~ 119 (158)
|.|+.+.|++|.+.+
T Consensus 161 g~Gv~e~l~WL~~~~ 175 (175)
T PF00025_consen 161 GEGVDEGLEWLIEQI 175 (175)
T ss_dssp TBTHHHHHHHHHHHH
T ss_pred CcCHHHHHHHHHhcC
Confidence 999999999998764
No 135
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.42 E-value=2.9e-12 Score=102.61 Aligned_cols=87 Identities=16% Similarity=0.099 Sum_probs=69.7
Q ss_pred EEEEEECCCh---hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSG---QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
+|+|+|+++. ++++++..|.+++..+......+|+++|+||+|+... .+..+.+.+.++..++.+||+++.|+
T Consensus 240 lI~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~~~----~e~l~~l~~~l~~~i~~iSA~tgeGI 315 (424)
T PRK12297 240 IVHVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLPEA----EENLEEFKEKLGPKVFPISALTGQGL 315 (424)
T ss_pred EEEEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCcCC----HHHHHHHHHHhCCcEEEEeCCCCCCH
Confidence 8999999864 6788888899999876543233899999999998432 23456666777778999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2600 109 WVNTRTPEINPLKY 122 (158)
Q Consensus 109 ~~lf~~l~~~~~~~ 122 (158)
+++++.+.+.+.+.
T Consensus 316 ~eL~~~L~~~l~~~ 329 (424)
T PRK12297 316 DELLYAVAELLEET 329 (424)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999999887653
No 136
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=99.38 E-value=2.3e-12 Score=96.55 Aligned_cols=83 Identities=10% Similarity=0.069 Sum_probs=66.3
Q ss_pred CeEEEEEEECCChh-HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQ-SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 29 gk~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
.|.+++|||++++. ||..+..|+..+.... +|+++|+||+||...+.+..+....+ +.++..++++||+++.|
T Consensus 37 ~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~-----i~~vIV~NK~DL~~~~~~~~~~~~~~-~~~g~~v~~~SAktg~g 110 (245)
T TIGR00157 37 IDQIVIVSSAVLPELSLNQLDRFLVVAEAQN-----IEPIIVLNKIDLLDDEDMEKEQLDIY-RNIGYQVLMTSSKNQDG 110 (245)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCC-----CCEEEEEECcccCCCHHHHHHHHHHH-HHCCCeEEEEecCCchh
Confidence 37799999999887 8999999998776433 89999999999965444433344444 35788999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 108 CWVNTRTPEI 117 (158)
Q Consensus 108 i~~lf~~l~~ 117 (158)
++++|+.+.+
T Consensus 111 i~eLf~~l~~ 120 (245)
T TIGR00157 111 LKELIEALQN 120 (245)
T ss_pred HHHHHhhhcC
Confidence 9999998764
No 137
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.38 E-value=4.8e-12 Score=87.24 Aligned_cols=84 Identities=8% Similarity=0.094 Sum_probs=60.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHH-----HHhCCeEEEEeCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLA-----QSLHLHSFAVSAR 103 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~ 103 (158)
+.+++|+|+++..++.....|+..+... .... +|+++|+||+|+.+.... .+..... ...+..++++|++
T Consensus 69 d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~p~iiv~nK~D~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~ 144 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEG--IPLLVLGNKNDLPGALSV--DELIEQMNLKSITDREVSCYSISCK 144 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHcChhhcC--CCEEEEEeCccccCCcCH--HHHHHHhCcccccCCceEEEEEEec
Confidence 4589999999999998888777776532 1122 899999999998653321 1111111 1123578999999
Q ss_pred CCCCHHHHHHHHHH
Q psy2600 104 TGDNCWVNTRTPEI 117 (158)
Q Consensus 104 ~~~~i~~lf~~l~~ 117 (158)
++.|+.++|+++.+
T Consensus 145 ~~~gi~~l~~~l~~ 158 (159)
T cd04159 145 EKTNIDIVLDWLIK 158 (159)
T ss_pred cCCChHHHHHHHhh
Confidence 99999999999875
No 138
>PLN00023 GTP-binding protein; Provisional
Probab=99.37 E-value=1.7e-11 Score=94.59 Aligned_cols=67 Identities=16% Similarity=0.251 Sum_probs=52.4
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcC----------CCCCcEEEEEEeCCCCCCCc---c---ccHHHHHHHHHH
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRK----------SSTPTYVALVANKGDMEHQR---V---VTLERHAKLAQS 92 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~----------~~~~~piilv~nK~Dl~~~~---~---~~~~~~~~~~~~ 92 (158)
++++|+|||++++.+|+++..|++++..... ...++|++|||||+||...+ . +..+++++++++
T Consensus 107 AdgiILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~~~~r~~s~~~~e~a~~~A~~ 186 (334)
T PLN00023 107 INGVIFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPKEGTRGSSGNLVDAARQWVEK 186 (334)
T ss_pred CCEEEEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECccccccccccccccccHHHHHHHHHH
Confidence 3449999999999999999999999986531 01138999999999996432 2 357889999998
Q ss_pred hCC
Q psy2600 93 LHL 95 (158)
Q Consensus 93 ~~~ 95 (158)
+|+
T Consensus 187 ~g~ 189 (334)
T PLN00023 187 QGL 189 (334)
T ss_pred cCC
Confidence 873
No 139
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.35 E-value=7.6e-12 Score=101.86 Aligned_cols=85 Identities=16% Similarity=0.060 Sum_probs=57.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHHHH-HHHHHhCCeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLERHA-KLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~-~~~~~~~~~~~~~Sa~~~~~i 108 (158)
+++|+|+++..++.+.. ++..+.... +|+++|+||+|+...... ...+.. .+......+++++||++|.||
T Consensus 297 vilV~Da~~~~s~~~~~-~~~~~~~~~-----~piIiV~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~~SAk~g~gv 370 (472)
T PRK03003 297 AVVLIDASEPISEQDQR-VLSMVIEAG-----RALVLAFNKWDLVDEDRRYYLEREIDRELAQVPWAPRVNISAKTGRAV 370 (472)
T ss_pred EEEEEeCCCCCCHHHHH-HHHHHHHcC-----CCEEEEEECcccCChhHHHHHHHHHHHhcccCCCCCEEEEECCCCCCH
Confidence 78999998887777653 444444322 899999999999642111 011111 111112367899999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2600 109 WVNTRTPEINPLKY 122 (158)
Q Consensus 109 ~~lf~~l~~~~~~~ 122 (158)
+++|+.+.+.+...
T Consensus 371 ~~lf~~i~~~~~~~ 384 (472)
T PRK03003 371 DKLVPALETALESW 384 (472)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999876543
No 140
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.32 E-value=1.2e-11 Score=97.16 Aligned_cols=79 Identities=16% Similarity=0.071 Sum_probs=58.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|.+++.+++++..|...+......+ +|+++|+||+|+..... .... ......++++||++|.|++++
T Consensus 272 il~VvD~s~~~~~~~~~~~~~~L~~l~~~~--~piIlV~NK~Dl~~~~~-----v~~~-~~~~~~~i~iSAktg~GI~eL 343 (351)
T TIGR03156 272 LLHVVDASDPDREEQIEAVEKVLEELGAED--IPQLLVYNKIDLLDEPR-----IERL-EEGYPEAVFVSAKTGEGLDLL 343 (351)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhccCC--CCEEEEEEeecCCChHh-----HHHH-HhCCCCEEEEEccCCCCHHHH
Confidence 899999999988888777766666543323 89999999999864221 1111 112245899999999999999
Q ss_pred HHHHHHH
Q psy2600 112 TRTPEIN 118 (158)
Q Consensus 112 f~~l~~~ 118 (158)
++.|.+.
T Consensus 344 ~~~I~~~ 350 (351)
T TIGR03156 344 LEAIAER 350 (351)
T ss_pred HHHHHhh
Confidence 9998764
No 141
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.32 E-value=1.3e-11 Score=93.81 Aligned_cols=83 Identities=20% Similarity=0.127 Sum_probs=58.6
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHH
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCW 109 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 109 (158)
.+++|+|+++..+++ ..++..+.... .|+++|+||+|+...... ......+....+. .++++||++|.|++
T Consensus 82 vvl~VvD~~~~~~~~--~~i~~~l~~~~-----~p~ilV~NK~Dl~~~~~~-~~~~~~~~~~~~~~~v~~iSA~~g~gi~ 153 (270)
T TIGR00436 82 LILFVVDSDQWNGDG--EFVLTKLQNLK-----RPVVLTRNKLDNKFKDKL-LPLIDKYAILEDFKDIVPISALTGDNTS 153 (270)
T ss_pred EEEEEEECCCCCchH--HHHHHHHHhcC-----CCEEEEEECeeCCCHHHH-HHHHHHHHhhcCCCceEEEecCCCCCHH
Confidence 499999998876654 34455554433 899999999998642221 2233344444443 68999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++++.+.+.+..
T Consensus 154 ~L~~~l~~~l~~ 165 (270)
T TIGR00436 154 FLAAFIEVHLPE 165 (270)
T ss_pred HHHHHHHHhCCC
Confidence 999999887643
No 142
>KOG4423|consensus
Probab=99.32 E-value=4.8e-12 Score=89.44 Aligned_cols=92 Identities=18% Similarity=0.200 Sum_probs=73.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhh--hcCCCCCcEEEEEEeCCCCCCCcccc-HHHHHHHHHHhCC-eEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHL--NRKSSTPTYVALVANKGDMEHQRVVT-LERHAKLAQSLHL-HSFAVSARTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~--~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~-~~~~~Sa~~~~~ 107 (158)
+++|||++....|+....|..++-. .-+.++++|+++.+||||........ ......+.+.+|. ..+++|++.+.|
T Consensus 102 ~~iVfdvt~s~tfe~~skwkqdldsk~qLpng~Pv~~vllankCd~e~~a~~~~~~~~d~f~kengf~gwtets~Kenkn 181 (229)
T KOG4423|consen 102 AFIVFDVTRSLTFEPVSKWKQDLDSKLQLPNGTPVPCVLLANKCDQEKSAKNEATRQFDNFKKENGFEGWTETSAKENKN 181 (229)
T ss_pred eEEEEEccccccccHHHHHHHhccCcccCCCCCcchheeccchhccChHhhhhhHHHHHHHHhccCccceeeeccccccC
Confidence 8999999999999999999999872 22345569999999999986533222 3456677777885 489999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q psy2600 108 CWVNTRTPEINPLKYL 123 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~ 123 (158)
+.|+-..+++.+....
T Consensus 182 i~Ea~r~lVe~~lvnd 197 (229)
T KOG4423|consen 182 IPEAQRELVEKILVND 197 (229)
T ss_pred hhHHHHHHHHHHHhhc
Confidence 9999999998876643
No 143
>PRK04213 GTP-binding protein; Provisional
Probab=99.31 E-value=7.9e-12 Score=90.58 Aligned_cols=54 Identities=20% Similarity=0.070 Sum_probs=42.5
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCC---------eEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHL---------HSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---------~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+|+++|+||+|+.... .+....+++.++. .++++||++| ||+++|++|.+.+.+
T Consensus 131 ~p~iiv~NK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g-gi~~l~~~l~~~~~~ 193 (201)
T PRK04213 131 IPPIVAVNKMDKIKNR---DEVLDEIAERLGLYPPWRQWQDIIAPISAKKG-GIEELKEAIRKRLHE 193 (201)
T ss_pred CCeEEEEECccccCcH---HHHHHHHHHHhcCCccccccCCcEEEEecccC-CHHHHHHHHHHhhcC
Confidence 8999999999986432 2345556666664 4799999999 999999999987654
No 144
>KOG1707|consensus
Probab=99.30 E-value=3.2e-12 Score=103.51 Aligned_cols=113 Identities=17% Similarity=0.091 Sum_probs=78.4
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHH-HHHHHHHhC-Ce-EEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLER-HAKLAQSLH-LH-SFAVSARTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~-~~-~~~~Sa~~~~~ 107 (158)
+.++|+.+++.+++.+. .|+..+++...+...+|+|+||||+|.......+.+. ...+.+++. ++ -++|||++..+
T Consensus 83 i~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecSA~~~~n 162 (625)
T KOG1707|consen 83 ICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECSALTLAN 162 (625)
T ss_pred EEEEEecCChHHhhhhhhhhhhhhhcccCCCccCCEEEEeeccCCccccccchhHHHHHHHHHhHHHHHHHhhhhhhhhh
Confidence 88999999999999995 8999999766443449999999999986322222222 334444432 22 58999999999
Q ss_pred HHHHHHHHHHHHHHhHhhccccccccccccccccccccccc
Q psy2600 108 CWVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTFYMAVKR 148 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (158)
+.++|+...+.+.++. .+-+....+..++...+++.|
T Consensus 163 ~~e~fYyaqKaVihPt----~PLyda~~qelkp~~v~al~R 199 (625)
T KOG1707|consen 163 VSELFYYAQKAVIHPT----SPLYDAEEQELKPRCVKALKR 199 (625)
T ss_pred hHhhhhhhhheeeccC----ccccccccccccHHHHHHHHH
Confidence 9999999999887653 223334444444444554444
No 145
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.30 E-value=3.5e-12 Score=89.16 Aligned_cols=75 Identities=23% Similarity=0.124 Sum_probs=55.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|.|+++.+ .-.....++.+.. +|+++|.||+|+.....+. .+...+.+.+|++++.+||+++.|++++
T Consensus 82 ii~VvDa~~l~---r~l~l~~ql~e~g-----~P~vvvlN~~D~a~~~g~~-id~~~Ls~~Lg~pvi~~sa~~~~g~~~L 152 (156)
T PF02421_consen 82 IIVVVDATNLE---RNLYLTLQLLELG-----IPVVVVLNKMDEAERKGIE-IDAEKLSERLGVPVIPVSARTGEGIDEL 152 (156)
T ss_dssp EEEEEEGGGHH---HHHHHHHHHHHTT-----SSEEEEEETHHHHHHTTEE-E-HHHHHHHHTS-EEEEBTTTTBTHHHH
T ss_pred EEEECCCCCHH---HHHHHHHHHHHcC-----CCEEEEEeCHHHHHHcCCE-ECHHHHHHHhCCCEEEEEeCCCcCHHHH
Confidence 88999987643 3233444555544 9999999999985433332 2467788889999999999999999999
Q ss_pred HHHH
Q psy2600 112 TRTP 115 (158)
Q Consensus 112 f~~l 115 (158)
++.|
T Consensus 153 ~~~I 156 (156)
T PF02421_consen 153 KDAI 156 (156)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9875
No 146
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=2.1e-11 Score=99.14 Aligned_cols=90 Identities=13% Similarity=0.017 Sum_probs=64.8
Q ss_pred EEEEEECCC----hhHHhhHHHHHHHHhhhcC---------CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEE
Q psy2600 32 VIFMYDITS----GQSFHSIPTWVDLFHLNRK---------SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSF 98 (158)
Q Consensus 32 ~i~v~d~~~----~~s~~~~~~~~~~~~~~~~---------~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 98 (158)
+|+|+|+++ ++.++++..|.+++..+.. .....|+++|+||+|+.....+. +......+..++.+|
T Consensus 240 Lv~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da~el~-e~l~~~l~~~g~~Vf 318 (500)
T PRK12296 240 LVHVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDARELA-EFVRPELEARGWPVF 318 (500)
T ss_pred EEEEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhhHHHH-HHHHHHHHHcCCeEE
Confidence 889999985 3466677777777765542 11128999999999996433321 222223344578899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 99 AVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
.+||+++.|+.+++.+|.+.+...
T Consensus 319 ~ISA~tgeGLdEL~~~L~ell~~~ 342 (500)
T PRK12296 319 EVSAASREGLRELSFALAELVEEA 342 (500)
T ss_pred EEECCCCCCHHHHHHHHHHHHHhh
Confidence 999999999999999999888664
No 147
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.29 E-value=1.8e-11 Score=98.73 Aligned_cols=78 Identities=17% Similarity=0.087 Sum_probs=60.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||.+++.+++.. |+..+.... +|+++|+||+|+... ....+++.++..++++||++ .||.++
T Consensus 286 il~V~D~s~~~s~~~~--~l~~~~~~~-----~piIlV~NK~Dl~~~------~~~~~~~~~~~~~~~vSak~-~gI~~~ 351 (442)
T TIGR00450 286 VIYVLDASQPLTKDDF--LIIDLNKSK-----KPFILVLNKIDLKIN------SLEFFVSSKVLNSSNLSAKQ-LKIKAL 351 (442)
T ss_pred EEEEEECCCCCChhHH--HHHHHhhCC-----CCEEEEEECccCCCc------chhhhhhhcCCceEEEEEec-CCHHHH
Confidence 8899999988877765 777665332 899999999998542 12345566778899999998 699999
Q ss_pred HHHHHHHHHHhH
Q psy2600 112 TRTPEINPLKYL 123 (158)
Q Consensus 112 f~~l~~~~~~~~ 123 (158)
|+.+.+.+.+..
T Consensus 352 ~~~L~~~i~~~~ 363 (442)
T TIGR00450 352 VDLLTQKINAFY 363 (442)
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 148
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.28 E-value=1.1e-10 Score=85.38 Aligned_cols=89 Identities=22% Similarity=0.157 Sum_probs=64.8
Q ss_pred EEEEEECCCh-hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc------------cccHHHHHHHHHH---hCC
Q psy2600 32 VIFMYDITSG-QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR------------VVTLERHAKLAQS---LHL 95 (158)
Q Consensus 32 ~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~---~~~ 95 (158)
+++|||.++. .+++....|...+....... .|+++|+||+|+...+ ............. ...
T Consensus 81 ~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (219)
T COG1100 81 ILIVYDSTLRESSDELTEEWLEELRELAPDD--VPILLVGNKIDLFDEQSSSEEILNQLNREVVLLVLAPKAVLPEVANP 158 (219)
T ss_pred EEEEEecccchhhhHHHHHHHHHHHHhCCCC--ceEEEEecccccccchhHHHHHHhhhhcCcchhhhHhHHhhhhhccc
Confidence 9999999994 45555679999998766433 8999999999997543 2222222222222 233
Q ss_pred eEEEEeCC--CCCCHHHHHHHHHHHHHHh
Q psy2600 96 HSFAVSAR--TGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 96 ~~~~~Sa~--~~~~i~~lf~~l~~~~~~~ 122 (158)
.++++|++ ++.+|.++|..+.+.+.+.
T Consensus 159 ~~~~~s~~~~~~~~v~~~~~~~~~~~~~~ 187 (219)
T COG1100 159 ALLETSAKSLTGPNVNELFKELLRKLLEE 187 (219)
T ss_pred ceeEeecccCCCcCHHHHHHHHHHHHHHh
Confidence 48999999 9999999999999988654
No 149
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.26 E-value=6e-11 Score=94.35 Aligned_cols=89 Identities=15% Similarity=0.066 Sum_probs=66.3
Q ss_pred EEEEEECC---ChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC--CeEEEEeCCCCC
Q psy2600 32 VIFMYDIT---SGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH--LHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~---~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~ 106 (158)
+++|+|++ +.++++++..|.+++..+.......|+++|+||+|+.....+ .+....+.+..+ ..++.+||+++.
T Consensus 241 lL~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~~el-~~~l~~l~~~~~~~~~Vi~ISA~tg~ 319 (390)
T PRK12298 241 LLHLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDEEEA-EERAKAIVEALGWEGPVYLISAASGL 319 (390)
T ss_pred EEEEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCChHHH-HHHHHHHHHHhCCCCCEEEEECCCCc
Confidence 88999988 456778888888888865432222899999999998643332 233444545544 368999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
||+++++.+.+.+.+
T Consensus 320 GIdeLl~~I~~~L~~ 334 (390)
T PRK12298 320 GVKELCWDLMTFIEE 334 (390)
T ss_pred CHHHHHHHHHHHhhh
Confidence 999999999988865
No 150
>PRK15494 era GTPase Era; Provisional
Probab=99.26 E-value=5.4e-11 Score=93.13 Aligned_cols=80 Identities=21% Similarity=0.170 Sum_probs=55.9
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC--CeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH--LHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i 108 (158)
+++|+|.++ +|.... .|+..+.... .|.++|+||+|+... . ..+...+....+ ..+|++||++|.|+
T Consensus 135 il~VvD~~~--s~~~~~~~il~~l~~~~-----~p~IlViNKiDl~~~-~--~~~~~~~l~~~~~~~~i~~iSAktg~gv 204 (339)
T PRK15494 135 VLLIIDSLK--SFDDITHNILDKLRSLN-----IVPIFLLNKIDIESK-Y--LNDIKAFLTENHPDSLLFPISALSGKNI 204 (339)
T ss_pred EEEEEECCC--CCCHHHHHHHHHHHhcC-----CCEEEEEEhhcCccc-c--HHHHHHHHHhcCCCcEEEEEeccCccCH
Confidence 677777544 566654 4555555433 566789999998643 1 334555555443 57999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2600 109 WVNTRTPEINPLK 121 (158)
Q Consensus 109 ~~lf~~l~~~~~~ 121 (158)
+++|+++.+.+.+
T Consensus 205 ~eL~~~L~~~l~~ 217 (339)
T PRK15494 205 DGLLEYITSKAKI 217 (339)
T ss_pred HHHHHHHHHhCCC
Confidence 9999999887654
No 151
>KOG0073|consensus
Probab=99.24 E-value=2.5e-10 Score=79.18 Aligned_cols=87 Identities=20% Similarity=0.208 Sum_probs=67.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhh-hcCCCCCcEEEEEEeCCCCCCCccccHHH------HHHHHHHhCCeEEEEeCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHL-NRKSSTPTYVALVANKGDMEHQRVVTLER------HAKLAQSLHLHSFAVSART 104 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~------~~~~~~~~~~~~~~~Sa~~ 104 (158)
+|+|+|.+|+..|++....+..+.. .+-.. .|+++++||.|++.. ++.++ ...++++..+..+-||+.+
T Consensus 87 lIwvvDssD~~r~~e~~~~L~~lL~eerlaG--~~~Lvlank~dl~~~--l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t 162 (185)
T KOG0073|consen 87 LIWVVDSSDRMRMQECKQELTELLVEERLAG--APLLVLANKQDLPGA--LSLEEISKALDLEELAKSHHWRLVKCSAVT 162 (185)
T ss_pred EEEEEECchHHHHHHHHHHHHHHHhhhhhcC--CceEEEEecCcCccc--cCHHHHHHhhCHHHhccccCceEEEEeccc
Confidence 9999999999999998776666662 22222 799999999999731 22222 3345566778899999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2600 105 GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~ 122 (158)
|+++.+-|+++...+..+
T Consensus 163 ge~l~~gidWL~~~l~~r 180 (185)
T KOG0073|consen 163 GEDLLEGIDWLCDDLMSR 180 (185)
T ss_pred cccHHHHHHHHHHHHHHH
Confidence 999999999999988763
No 152
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.24 E-value=1.1e-10 Score=79.93 Aligned_cols=82 Identities=20% Similarity=0.122 Sum_probs=57.0
Q ss_pred EEEEEECCCh-hHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSG-QSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++++|.+.. .++.... .|...+....... .|+++++||+|+.... ........+.......++++||+++.|+.
T Consensus 77 ~i~~~d~~~~v~~~~~~~~~~~~~~~~~~~~~--~p~ivv~nK~D~~~~~-~~~~~~~~~~~~~~~~~~~~sa~~~~gv~ 153 (161)
T TIGR00231 77 SLRVFDIVILVLDVEEILEKQTKEIIHHAESN--VPIILVGNKIDLRDAK-LKTHVAFLFAKLNGEPIIPLSAETGKNID 153 (161)
T ss_pred EEEEEEEeeeehhhhhHhHHHHHHHHHhcccC--CcEEEEEEcccCCcch-hhHHHHHHHhhccCCceEEeecCCCCCHH
Confidence 7788888776 6666654 6766666443323 8999999999986432 22223333333345679999999999999
Q ss_pred HHHHHHH
Q psy2600 110 VNTRTPE 116 (158)
Q Consensus 110 ~lf~~l~ 116 (158)
++|+.|-
T Consensus 154 ~~~~~l~ 160 (161)
T TIGR00231 154 SAFKIVE 160 (161)
T ss_pred HHHHHhh
Confidence 9998863
No 153
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.24 E-value=6.9e-11 Score=83.82 Aligned_cols=84 Identities=18% Similarity=0.122 Sum_probs=62.1
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC---eEEEEeCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL---HSFAVSART 104 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~ 104 (158)
.++++|+|||+++..++.....|.... ... +|+++|+||+|+.... .......+++.+++ .++++||++
T Consensus 90 ~ad~~i~v~D~~~~~~~~~~~~~~~~~-~~~-----~~iiiv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~Sa~~ 161 (179)
T cd01890 90 ACEGALLLVDATQGVEAQTLANFYLAL-ENN-----LEIIPVINKIDLPSAD--PERVKQQIEDVLGLDPSEAILVSAKT 161 (179)
T ss_pred hcCeEEEEEECCCCccHhhHHHHHHHH-HcC-----CCEEEEEECCCCCcCC--HHHHHHHHHHHhCCCcccEEEeeccC
Confidence 346799999999877777766665433 222 8999999999986422 12234456666665 389999999
Q ss_pred CCCHHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEINP 119 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~ 119 (158)
|.|++++|+.+.+.+
T Consensus 162 g~gi~~l~~~l~~~~ 176 (179)
T cd01890 162 GLGVEDLLEAIVERI 176 (179)
T ss_pred CCCHHHHHHHHHhhC
Confidence 999999999998775
No 154
>PRK11058 GTPase HflX; Provisional
Probab=99.24 E-value=1e-10 Score=94.06 Aligned_cols=83 Identities=16% Similarity=0.011 Sum_probs=59.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe-EEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH-SFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 110 (158)
+|+|+|++++.+++++..|...+....... +|+++|+||+|+..... ... .. ...+.+ ++.+||++|.|+++
T Consensus 280 IL~VvDaS~~~~~e~l~~v~~iL~el~~~~--~pvIiV~NKiDL~~~~~---~~~-~~-~~~~~~~~v~ISAktG~GIde 352 (426)
T PRK11058 280 LLHVVDAADVRVQENIEAVNTVLEEIDAHE--IPTLLVMNKIDMLDDFE---PRI-DR-DEENKPIRVWLSAQTGAGIPL 352 (426)
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHHhccCC--CCEEEEEEcccCCCchh---HHH-HH-HhcCCCceEEEeCCCCCCHHH
Confidence 999999999988888765555444333222 89999999999853211 111 11 123444 58899999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+++.+.+.+..
T Consensus 353 L~e~I~~~l~~ 363 (426)
T PRK11058 353 LFQALTERLSG 363 (426)
T ss_pred HHHHHHHHhhh
Confidence 99999998754
No 155
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.24 E-value=1.6e-10 Score=92.87 Aligned_cols=83 Identities=22% Similarity=0.163 Sum_probs=55.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH-HHHHh----CCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQSL----HLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~ 106 (158)
+|+|+|+++..+..+. .++..+.... +|+++|+||+|+..... ..++... +...+ +.+++++||++|.
T Consensus 258 ~ilV~D~~~~~~~~~~-~~~~~~~~~~-----~~iiiv~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~vi~~SA~~g~ 330 (429)
T TIGR03594 258 VLLVLDATEGITEQDL-RIAGLILEAG-----KALVIVVNKWDLVKDEK-TREEFKKELRRKLPFLDFAPIVFISALTGQ 330 (429)
T ss_pred EEEEEECCCCccHHHH-HHHHHHHHcC-----CcEEEEEECcccCCCHH-HHHHHHHHHHHhcccCCCCceEEEeCCCCC
Confidence 7888888876665544 3334433332 89999999999862111 1112222 22222 3679999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
|+.++|+.+.+.+..
T Consensus 331 ~v~~l~~~i~~~~~~ 345 (429)
T TIGR03594 331 GVDKLLDAIDEVYEN 345 (429)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887654
No 156
>KOG0096|consensus
Probab=99.22 E-value=2.1e-11 Score=86.36 Aligned_cols=85 Identities=20% Similarity=0.292 Sum_probs=70.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
++++||++..-.+....+|...+...+.+ +||+++|||.|....+ + ......+-+..++.|+++||+.+.|.+.-
T Consensus 86 AiimFdVtsr~t~~n~~rwhrd~~rv~~N---iPiv~cGNKvDi~~r~-~-k~k~v~~~rkknl~y~~iSaksn~NfekP 160 (216)
T KOG0096|consen 86 AIIMFDVTSRFTYKNVPRWHRDLVRVREN---IPIVLCGNKVDIKARK-V-KAKPVSFHRKKNLQYYEISAKSNYNFERP 160 (216)
T ss_pred eEEEeeeeehhhhhcchHHHHHHHHHhcC---CCeeeeccceeccccc-c-ccccceeeecccceeEEeecccccccccc
Confidence 99999999999999999999999866654 9999999999986533 1 22334455566789999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|.++++.+..
T Consensus 161 Fl~LarKl~G 170 (216)
T KOG0096|consen 161 FLWLARKLTG 170 (216)
T ss_pred hHHHhhhhcC
Confidence 9999988754
No 157
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.21 E-value=7.2e-11 Score=96.20 Aligned_cols=79 Identities=25% Similarity=0.175 Sum_probs=54.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 110 (158)
+|+|+|+++..++.. ..|...++... +|+++|+||+|+.... .+..+.+ ..++ .++++||++|.|+.+
T Consensus 121 il~VvD~~~~~s~~~-~~i~~~l~~~~-----~piilV~NK~Dl~~~~---~~~~~~~--~~g~~~~~~iSA~~g~gi~e 189 (472)
T PRK03003 121 VLFVVDATVGATATD-EAVARVLRRSG-----KPVILAANKVDDERGE---ADAAALW--SLGLGEPHPVSALHGRGVGD 189 (472)
T ss_pred EEEEEECCCCCCHHH-HHHHHHHHHcC-----CCEEEEEECccCCccc---hhhHHHH--hcCCCCeEEEEcCCCCCcHH
Confidence 889999988655443 34444444332 8999999999986321 1122222 2343 357999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+|+.+++.+.+
T Consensus 190 L~~~i~~~l~~ 200 (472)
T PRK03003 190 LLDAVLAALPE 200 (472)
T ss_pred HHHHHHhhccc
Confidence 99999988865
No 158
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.20 E-value=1.2e-10 Score=80.29 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=55.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+.+++|+|++++.+......|.. .. . .|+++|+||+|+...... .....+..++++||.++.|++
T Consensus 82 ~~~v~v~d~~~~~~~~~~~~~~~-----~~-~--~~vi~v~nK~D~~~~~~~-------~~~~~~~~~~~~Sa~~~~~v~ 146 (157)
T cd04164 82 DLVLFVIDASRGLDEEDLEILEL-----PA-D--KPIIVVLNKSDLLPDSEL-------LSLLAGKPIIAISAKTGEGLD 146 (157)
T ss_pred CEEEEEEECCCCCCHHHHHHHHh-----hc-C--CCEEEEEEchhcCCcccc-------ccccCCCceEEEECCCCCCHH
Confidence 44999999998777666544333 11 1 899999999998653322 233446789999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 110 VNTRTPEINP 119 (158)
Q Consensus 110 ~lf~~l~~~~ 119 (158)
+++..|.+.+
T Consensus 147 ~l~~~l~~~~ 156 (157)
T cd04164 147 ELKEALLELA 156 (157)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 159
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.19 E-value=2e-10 Score=79.98 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=52.6
Q ss_pred CeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc--ccHHHHHHHHHH---hCCeEEEE
Q psy2600 29 GKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV--VTLERHAKLAQS---LHLHSFAV 100 (158)
Q Consensus 29 gk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~ 100 (158)
.+.+++|+|+++ .++++.+ ..+.... . .|+++|+||+|+..... ....+.....+. .+.+++++
T Consensus 75 ad~ii~V~d~~~~~~~~~~~~~----~~~~~~~--~--~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (164)
T cd04171 75 IDLVLLVVAADEGIMPQTREHL----EILELLG--I--KRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPV 146 (164)
T ss_pred CCEEEEEEECCCCccHhHHHHH----HHHHHhC--C--CcEEEEEECccccCHHHHHHHHHHHHHHHHhcCcCCCcEEEE
Confidence 467999999986 3333322 2222222 1 48999999999864321 111233333333 35789999
Q ss_pred eCCCCCCHHHHHHHHHH
Q psy2600 101 SARTGDNCWVNTRTPEI 117 (158)
Q Consensus 101 Sa~~~~~i~~lf~~l~~ 117 (158)
||+++.|++++|+.+.+
T Consensus 147 Sa~~~~~v~~l~~~l~~ 163 (164)
T cd04171 147 SAVTGEGIEELKEYLDE 163 (164)
T ss_pred eCCCCcCHHHHHHHHhh
Confidence 99999999999998864
No 160
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.19 E-value=6.6e-11 Score=95.81 Aligned_cols=74 Identities=15% Similarity=0.090 Sum_probs=56.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|.+++.++++...|.. . .. .|+++|+||+|+....... ...+..++++||++|.|++++
T Consensus 298 il~VvD~s~~~s~~~~~~l~~-----~-~~--~piiiV~NK~DL~~~~~~~--------~~~~~~~i~iSAktg~GI~~L 361 (449)
T PRK05291 298 VLLVLDASEPLTEEDDEILEE-----L-KD--KPVIVVLNKADLTGEIDLE--------EENGKPVIRISAKTGEGIDEL 361 (449)
T ss_pred EEEEecCCCCCChhHHHHHHh-----c-CC--CCcEEEEEhhhccccchhh--------hccCCceEEEEeeCCCCHHHH
Confidence 899999998877776544443 1 12 8999999999986432211 334567899999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
++.+.+.+..
T Consensus 362 ~~~L~~~l~~ 371 (449)
T PRK05291 362 REAIKELAFG 371 (449)
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 161
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.19 E-value=3.3e-10 Score=79.24 Aligned_cols=83 Identities=18% Similarity=0.180 Sum_probs=56.2
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHH-HHHHHHh----CCeEEEEeCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH-AKLAQSL----HLHSFAVSART 104 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~----~~~~~~~Sa~~ 104 (158)
+.+++|+|.+++.+.... .++..+.... .|+++++||+|+........... ..+.+.+ ...++++||++
T Consensus 86 d~vi~v~d~~~~~~~~~~-~~~~~~~~~~-----~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 159 (174)
T cd01895 86 DVVLLVIDATEGITEQDL-RIAGLILEEG-----KALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALT 159 (174)
T ss_pred CeEEEEEeCCCCcchhHH-HHHHHHHhcC-----CCEEEEEeccccCCccHHHHHHHHHHHHhhcccccCCceEEEeccC
Confidence 569999999887665543 3333333332 89999999999865421222222 2233333 25799999999
Q ss_pred CCCHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEIN 118 (158)
Q Consensus 105 ~~~i~~lf~~l~~~ 118 (158)
+.|+.++++.+.+.
T Consensus 160 ~~~i~~~~~~l~~~ 173 (174)
T cd01895 160 GQGVDKLFDAIDEV 173 (174)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999998764
No 162
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.16 E-value=3.8e-10 Score=78.14 Aligned_cols=80 Identities=24% Similarity=0.168 Sum_probs=53.2
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 109 (158)
+++|+|++++ +.+.. .+...+.... .|+++|+||+|+.............+....+ .+++++|++++.+++
T Consensus 86 i~~v~d~~~~--~~~~~~~~~~~~~~~~-----~~~iiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~ 158 (168)
T cd04163 86 VLFVVDASEP--IGEGDEFILELLKKSK-----TPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVD 158 (168)
T ss_pred EEEEEECCCc--cCchHHHHHHHHHHhC-----CCEEEEEEchhccccHHHHHHHHHHHHhccCCCceEEEEeccCCChH
Confidence 7888888775 22322 2333343332 8999999999986322222233334444443 678999999999999
Q ss_pred HHHHHHHHH
Q psy2600 110 VNTRTPEIN 118 (158)
Q Consensus 110 ~lf~~l~~~ 118 (158)
++++.|.+.
T Consensus 159 ~l~~~l~~~ 167 (168)
T cd04163 159 ELLEEIVKY 167 (168)
T ss_pred HHHHHHHhh
Confidence 999998764
No 163
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.13 E-value=3e-10 Score=80.01 Aligned_cols=90 Identities=17% Similarity=0.080 Sum_probs=65.0
Q ss_pred CeEEEEEEECCCh------hHHhhHHHHHHHHhhhcCC-----CCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeE
Q psy2600 29 GKIVIFMYDITSG------QSFHSIPTWVDLFHLNRKS-----STPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHS 97 (158)
Q Consensus 29 gk~~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~-----~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~ 97 (158)
.+.+++|+|+++. .++++...|...+...... ....|+++|+||+|+..................+..+
T Consensus 75 ~d~ii~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~ 154 (176)
T cd01881 75 ADAILHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEV 154 (176)
T ss_pred cCEEEEEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchhHHHHHHHHHHhcCCCCCE
Confidence 5669999999987 5788888888888743321 0118999999999996543332222223333445779
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
+++||+++.|++++++.+.+.
T Consensus 155 ~~~Sa~~~~gl~~l~~~l~~~ 175 (176)
T cd01881 155 VPISAKTEEGLDELIRAIYEL 175 (176)
T ss_pred EEEehhhhcCHHHHHHHHHhh
Confidence 999999999999999998764
No 164
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.13 E-value=2.7e-10 Score=78.62 Aligned_cols=79 Identities=19% Similarity=0.114 Sum_probs=53.8
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDN 107 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 107 (158)
.+.+++|+|..+..+.... .+...+.... .|+++|+||+|+..... . .......+. .++++|++++.|
T Consensus 77 ~d~ii~v~d~~~~~~~~~~-~~~~~~~~~~-----~piiiv~nK~D~~~~~~----~-~~~~~~~~~~~~~~~Sa~~~~g 145 (157)
T cd01894 77 ADVILFVVDGREGLTPADE-EIAKYLRKSK-----KPVILVVNKVDNIKEED----E-AAEFYSLGFGEPIPISAEHGRG 145 (157)
T ss_pred CCEEEEEEeccccCCccHH-HHHHHHHhcC-----CCEEEEEECcccCChHH----H-HHHHHhcCCCCeEEEecccCCC
Confidence 3469999998765443332 2222333332 89999999999865322 1 222334555 689999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 108 CWVNTRTPEIN 118 (158)
Q Consensus 108 i~~lf~~l~~~ 118 (158)
++++|+.+.+.
T Consensus 146 v~~l~~~l~~~ 156 (157)
T cd01894 146 IGDLLDAILEL 156 (157)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 165
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.10 E-value=1.2e-09 Score=76.41 Aligned_cols=87 Identities=15% Similarity=0.071 Sum_probs=53.3
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc-HHHHHHHHH----Hh--CCeEEEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT-LERHAKLAQ----SL--HLHSFAV 100 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~----~~--~~~~~~~ 100 (158)
.++.+++|+|+++....+.. ..+..+.... +|+++|+||+|+....... ......+.. .+ +..++++
T Consensus 73 ~~d~il~v~d~~~~~~~~~~-~~~~~~~~~~-----~p~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (168)
T cd01887 73 LTDIAILVVAADDGVMPQTI-EAIKLAKAAN-----VPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPT 146 (168)
T ss_pred hcCEEEEEEECCCCccHHHH-HHHHHHHHcC-----CCEEEEEEceecccccHHHHHHHHHHhhccccccccCcCcEEEe
Confidence 45679999999874321111 1122233322 8999999999986322100 011111111 11 2579999
Q ss_pred eCCCCCCHHHHHHHHHHHHH
Q psy2600 101 SARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 101 Sa~~~~~i~~lf~~l~~~~~ 120 (158)
||+++.|+.++|+++.+...
T Consensus 147 Sa~~~~gi~~l~~~l~~~~~ 166 (168)
T cd01887 147 SAKTGEGIDDLLEAILLLAE 166 (168)
T ss_pred ecccCCCHHHHHHHHHHhhh
Confidence 99999999999999987653
No 166
>PRK00089 era GTPase Era; Reviewed
Probab=99.09 E-value=8.5e-10 Score=84.58 Aligned_cols=83 Identities=20% Similarity=0.139 Sum_probs=56.2
Q ss_pred EEEEEECCChhHHhhHHH-HHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 109 (158)
+++|+|+++. +..... ++..+.... .|+++|+||+|+.............+.+..+ ..++.+||+++.|+.
T Consensus 88 il~vvd~~~~--~~~~~~~i~~~l~~~~-----~pvilVlNKiDl~~~~~~l~~~~~~l~~~~~~~~i~~iSA~~~~gv~ 160 (292)
T PRK00089 88 VLFVVDADEK--IGPGDEFILEKLKKVK-----TPVILVLNKIDLVKDKEELLPLLEELSELMDFAEIVPISALKGDNVD 160 (292)
T ss_pred EEEEEeCCCC--CChhHHHHHHHHhhcC-----CCEEEEEECCcCCCCHHHHHHHHHHHHhhCCCCeEEEecCCCCCCHH
Confidence 8899998872 222222 333333222 8999999999997332222334445555444 568999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++++.+.+.+..
T Consensus 161 ~L~~~L~~~l~~ 172 (292)
T PRK00089 161 ELLDVIAKYLPE 172 (292)
T ss_pred HHHHHHHHhCCC
Confidence 999999987753
No 167
>KOG0070|consensus
Probab=99.09 E-value=1.2e-09 Score=77.19 Aligned_cols=87 Identities=15% Similarity=0.113 Sum_probs=64.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHH-----HHhCCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA-----QSLHLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~~ 106 (158)
+|||.|.+|++.+.....-+..+..... ....|+++.+||.|++..- +..+..... ......+..|+|.+|.
T Consensus 88 lIfVvDS~Dr~Ri~eak~eL~~~l~~~~-l~~~~llv~aNKqD~~~al--s~~ei~~~L~l~~l~~~~w~iq~~~a~~G~ 164 (181)
T KOG0070|consen 88 LIFVVDSSDRERIEEAKEELHRMLAEPE-LRNAPLLVFANKQDLPGAL--SAAEITNKLGLHSLRSRNWHIQSTCAISGE 164 (181)
T ss_pred EEEEEeCCcHHHHHHHHHHHHHHHcCcc-cCCceEEEEechhhccccC--CHHHHHhHhhhhccCCCCcEEeeccccccc
Confidence 9999999999999998877776663332 1229999999999997533 222322221 2234567889999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
|+.+.++++.+.+..
T Consensus 165 GL~egl~wl~~~~~~ 179 (181)
T KOG0070|consen 165 GLYEGLDWLSNNLKK 179 (181)
T ss_pred cHHHHHHHHHHHHhc
Confidence 999999999988754
No 168
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.08 E-value=5e-10 Score=74.34 Aligned_cols=40 Identities=30% Similarity=0.584 Sum_probs=31.5
Q ss_pred EEEEEECCChhHHhhHHH---HHHHHhhhcCCCCCcEEEEEEeCCC
Q psy2600 32 VIFMYDITSGQSFHSIPT---WVDLFHLNRKSSTPTYVALVANKGD 74 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~~piilv~nK~D 74 (158)
+++|||++++.||+.+.. |+..+...... +|+++|+||.|
T Consensus 77 ~ilv~D~s~~~s~~~~~~~~~~l~~~~~~~~~---~piilv~nK~D 119 (119)
T PF08477_consen 77 VILVYDLSDPESLEYLSQLLKWLKNIRKRDKN---IPIILVGNKSD 119 (119)
T ss_dssp EEEEEECCGHHHHHHHHHHHHHHHHHHHHSSC---SEEEEEEE-TC
T ss_pred EEEEEcCCChHHHHHHHHHHHHHHHHHccCCC---CCEEEEEeccC
Confidence 999999999999999754 56665544333 99999999998
No 169
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=99.06 E-value=1.3e-09 Score=74.89 Aligned_cols=75 Identities=25% Similarity=0.267 Sum_probs=52.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe-EEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH-SFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 110 (158)
+++|.|.+++.+.-. ..+..- .. .|+|-|.||+|+.... ...+.++++.+..|+. +|++|+.+|+||++
T Consensus 67 V~ll~dat~~~~~~p-P~fa~~---f~-----~pvIGVITK~Dl~~~~-~~i~~a~~~L~~aG~~~if~vS~~~~eGi~e 136 (143)
T PF10662_consen 67 VLLLQDATEPRSVFP-PGFASM---FN-----KPVIGVITKIDLPSDD-ANIERAKKWLKNAGVKEIFEVSAVTGEGIEE 136 (143)
T ss_pred EEEEecCCCCCccCC-chhhcc---cC-----CCEEEEEECccCccch-hhHHHHHHHHHHcCCCCeEEEECCCCcCHHH
Confidence 888888887543211 011111 12 8999999999997322 2345677777877854 89999999999999
Q ss_pred HHHHHH
Q psy2600 111 NTRTPE 116 (158)
Q Consensus 111 lf~~l~ 116 (158)
|.+.|-
T Consensus 137 L~~~L~ 142 (143)
T PF10662_consen 137 LKDYLE 142 (143)
T ss_pred HHHHHh
Confidence 998874
No 170
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.06 E-value=2.1e-09 Score=74.33 Aligned_cols=83 Identities=16% Similarity=0.021 Sum_probs=62.0
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
..+.+++|+|.++..+. ..|...+.... +|+++|+||+|+.....+.. ....+++.++.+++++||.++.|
T Consensus 74 ~~d~vi~v~d~~~~~~~---~~~~~~~~~~~-----~~~iiv~NK~Dl~~~~~~~~-~~~~~~~~~~~~~~~iSa~~~~~ 144 (158)
T cd01879 74 KPDLIVNVVDATNLERN---LYLTLQLLELG-----LPVVVALNMIDEAEKRGIKI-DLDKLSELLGVPVVPTSARKGEG 144 (158)
T ss_pred CCcEEEEEeeCCcchhH---HHHHHHHHHcC-----CCEEEEEehhhhcccccchh-hHHHHHHhhCCCeEEEEccCCCC
Confidence 45679999999875442 34555554433 89999999999965443332 34567777788999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINP 119 (158)
Q Consensus 108 i~~lf~~l~~~~ 119 (158)
+.++|+.+.+.+
T Consensus 145 ~~~l~~~l~~~~ 156 (158)
T cd01879 145 IDELKDAIAELA 156 (158)
T ss_pred HHHHHHHHHHHh
Confidence 999999988763
No 171
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.04 E-value=1.6e-09 Score=78.19 Aligned_cols=77 Identities=17% Similarity=0.053 Sum_probs=48.0
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc-ccHHHHHHHHH-------HhCCeEEEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV-VTLERHAKLAQ-------SLHLHSFAV 100 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~~~~~~~~~~-------~~~~~~~~~ 100 (158)
.+++++|+|+++. .+.....|+..+.... +|+++|+||+|+..... ....+...+.. ..+++++++
T Consensus 89 ~d~~ilV~d~~~~-~~~~~~~~~~~~~~~~-----~p~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~ 162 (194)
T cd01891 89 VDGVLLLVDASEG-PMPQTRFVLKKALELG-----LKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQLDFPVLYA 162 (194)
T ss_pred cCEEEEEEECCCC-ccHHHHHHHHHHHHcC-----CCEEEEEECCCCCCCCHHHHHHHHHHHHHHhCCccccCccCEEEe
Confidence 3569999999873 2333344444444332 89999999999864322 11223333332 235779999
Q ss_pred eCCCCCCHHHH
Q psy2600 101 SARTGDNCWVN 111 (158)
Q Consensus 101 Sa~~~~~i~~l 111 (158)
||++|.|+.++
T Consensus 163 Sa~~g~~~~~~ 173 (194)
T cd01891 163 SAKNGWASLNL 173 (194)
T ss_pred ehhcccccccc
Confidence 99999876433
No 172
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.04 E-value=2.3e-09 Score=91.31 Aligned_cols=82 Identities=16% Similarity=0.107 Sum_probs=56.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH-HHHHh----CCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQSL----HLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~ 106 (158)
+++|+|+++..++++.. ++..+.... +|+++|+||+|+..... .+..+. +...+ ..+++.+||++|.
T Consensus 536 vilViDat~~~s~~~~~-i~~~~~~~~-----~piIiV~NK~DL~~~~~--~~~~~~~~~~~l~~~~~~~ii~iSAktg~ 607 (712)
T PRK09518 536 ALFLFDASQPISEQDLK-VMSMAVDAG-----RALVLVFNKWDLMDEFR--RQRLERLWKTEFDRVTWARRVNLSAKTGW 607 (712)
T ss_pred EEEEEECCCCCCHHHHH-HHHHHHHcC-----CCEEEEEEchhcCChhH--HHHHHHHHHHhccCCCCCCEEEEECCCCC
Confidence 88999998877776654 334443332 89999999999864211 112222 22221 2456899999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
|+.++|+.+.+.+..
T Consensus 608 gv~~L~~~i~~~~~~ 622 (712)
T PRK09518 608 HTNRLAPAMQEALES 622 (712)
T ss_pred CHHHHHHHHHHHHHH
Confidence 999999999887765
No 173
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.03 E-value=2.9e-09 Score=76.57 Aligned_cols=57 Identities=12% Similarity=-0.116 Sum_probs=40.9
Q ss_pred cEEEEEEeCCCCCCCccc--cHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVV--TLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+|+++++||+|+.+.... ..+............++++||+++.|++++++.+.+.+.
T Consensus 136 ~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~Sa~~~~gi~~l~~~i~~~~~ 194 (196)
T PRK00454 136 IPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVILFSSLKKQGIDELRAAIAKWLA 194 (196)
T ss_pred CcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceEEEEcCCCCCHHHHHHHHHHHhc
Confidence 889999999998643221 111222333333578999999999999999999987764
No 174
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.03 E-value=1.5e-09 Score=77.12 Aligned_cols=86 Identities=15% Similarity=0.005 Sum_probs=57.2
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc--HHHHHHHHHH--------------
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT--LERHAKLAQS-------------- 92 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~-------------- 92 (158)
.+++++|+|+++..+... ..++..+.... .|+++|+||+|+....... ........+.
T Consensus 86 ~d~~i~v~d~~~~~~~~~-~~~~~~~~~~~-----~~i~iv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (189)
T cd00881 86 SDGAILVVDANEGVQPQT-REHLRIAREGG-----LPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTKEEGTRNG 159 (189)
T ss_pred cCEEEEEEECCCCCcHHH-HHHHHHHHHCC-----CCeEEEEECCCCcchhcHHHHHHHHHHHHccccccchhhhhcccC
Confidence 345999999987654432 23444444322 8999999999986422211 1222222222
Q ss_pred hCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 93 LHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 93 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
...+++++||+.|.|+.++|..+.+.+.
T Consensus 160 ~~~~v~~~Sa~~g~gi~~l~~~l~~~l~ 187 (189)
T cd00881 160 LLVPIVPGSALTGIGVEELLEAIVEHLP 187 (189)
T ss_pred CcceEEEEecccCcCHHHHHHHHHhhCC
Confidence 2467899999999999999999998863
No 175
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.03 E-value=9.4e-10 Score=91.79 Aligned_cols=82 Identities=13% Similarity=-0.010 Sum_probs=61.8
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
.|.+++|+|.++.+ ....+..++.+.+ +|+++|+||+|+.+.+.+. .+.+.+.+..+++++++||++|.|+
T Consensus 73 aDvvI~VvDat~le---r~l~l~~ql~~~~-----~PiIIVlNK~Dl~~~~~i~-~d~~~L~~~lg~pvv~tSA~tg~Gi 143 (591)
T TIGR00437 73 PDLVVNVVDASNLE---RNLYLTLQLLELG-----IPMILALNLVDEAEKKGIR-IDEEKLEERLGVPVVPTSATEGRGI 143 (591)
T ss_pred CCEEEEEecCCcch---hhHHHHHHHHhcC-----CCEEEEEehhHHHHhCCCh-hhHHHHHHHcCCCEEEEECCCCCCH
Confidence 46799999987633 2233444444332 8999999999986544443 3567788888999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 109 WVNTRTPEINP 119 (158)
Q Consensus 109 ~~lf~~l~~~~ 119 (158)
+++|+.+.+..
T Consensus 144 ~eL~~~i~~~~ 154 (591)
T TIGR00437 144 ERLKDAIRKAI 154 (591)
T ss_pred HHHHHHHHHHh
Confidence 99999998754
No 176
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.03 E-value=1.8e-09 Score=87.11 Aligned_cols=83 Identities=18% Similarity=0.107 Sum_probs=54.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH----hCCeEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS----LHLHSFAVSARTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~ 107 (158)
+|+|+|+++..+..+. .+...+.... +|+++|+||+|+...... .+....+... ...+++++||+++.|
T Consensus 259 ~ilViD~~~~~~~~~~-~i~~~~~~~~-----~~~ivv~NK~Dl~~~~~~-~~~~~~~~~~l~~~~~~~i~~~SA~~~~g 331 (435)
T PRK00093 259 VLLVIDATEGITEQDL-RIAGLALEAG-----RALVIVVNKWDLVDEKTM-EEFKKELRRRLPFLDYAPIVFISALTGQG 331 (435)
T ss_pred EEEEEeCCCCCCHHHH-HHHHHHHHcC-----CcEEEEEECccCCCHHHH-HHHHHHHHHhcccccCCCEEEEeCCCCCC
Confidence 7888888876555443 2333333333 899999999998632211 1111222222 236799999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINPLK 121 (158)
Q Consensus 108 i~~lf~~l~~~~~~ 121 (158)
+.++|+.+.+....
T Consensus 332 v~~l~~~i~~~~~~ 345 (435)
T PRK00093 332 VDKLLEAIDEAYEN 345 (435)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998876544
No 177
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.02 E-value=6.3e-09 Score=70.24 Aligned_cols=87 Identities=30% Similarity=0.419 Sum_probs=62.4
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHh-hhcCCCCCcEEEEEEeCCCCCCCccccHHH-HHHHHHHhCCeEEEEeCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLER-HAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~-~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
.+++++|+|++++.++.....|..... ...... +|+++|+||+|+.......... ........+.+++++|+..+.
T Consensus 69 ~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ivv~nk~D~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 146 (157)
T cd00882 69 ADGIILVYDVTDRESFENVKEWLLLILINKEGEN--IPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGE 146 (157)
T ss_pred CCEEEEEEECcCHHHHHHHHHHHHHHHHhhccCC--CcEEEEEeccccccccchHHHHHHHHHHhhcCCcEEEEecCCCC
Confidence 467999999999999998887732222 222222 9999999999986433322221 233444456889999999999
Q ss_pred CHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEI 117 (158)
Q Consensus 107 ~i~~lf~~l~~ 117 (158)
|+.++++++.+
T Consensus 147 ~i~~~~~~l~~ 157 (157)
T cd00882 147 NVEELFEELAE 157 (157)
T ss_pred ChHHHHHHHhC
Confidence 99999998753
No 178
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.01 E-value=9e-09 Score=81.95 Aligned_cols=84 Identities=23% Similarity=0.136 Sum_probs=56.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH-HHHHh----CCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQSL----HLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~----~~~~~~~Sa~~~~ 106 (158)
+++|.|.+.+-+-++ ......+.+.. .++++|.||+|+........++.+. +-+.+ ..+.+.+||.++.
T Consensus 264 vllviDa~~~~~~qD-~~ia~~i~~~g-----~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~~~ 337 (444)
T COG1160 264 VLLVIDATEGISEQD-LRIAGLIEEAG-----RGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALTGQ 337 (444)
T ss_pred EEEEEECCCCchHHH-HHHHHHHHHcC-----CCeEEEEEccccCCchhhHHHHHHHHHHHHhccccCCeEEEEEecCCC
Confidence 999999987654333 23344444433 8899999999986543233333332 22222 2568999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
++.++|+.+......
T Consensus 338 ~i~~l~~~i~~~~~~ 352 (444)
T COG1160 338 GLDKLFEAIKEIYEC 352 (444)
T ss_pred ChHHHHHHHHHHHHH
Confidence 999999988765543
No 179
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.00 E-value=3.3e-09 Score=76.46 Aligned_cols=101 Identities=17% Similarity=0.105 Sum_probs=62.8
Q ss_pred ceEEEEEEECCC-----------CCCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--
Q psy2600 15 EIQLKVVLLGDP-----------SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV-- 81 (158)
Q Consensus 15 ~~~~ki~~~G~~-----------~vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-- 81 (158)
.+.+.++..+.. ...+++++|+|+++.........|.. ..... +|+++|+||+|+......
T Consensus 67 ~~~~~i~DtpG~~~~~~~~~~~~~~~d~vi~VvD~~~~~~~~~~~~~~~-~~~~~-----~~~iiv~NK~Dl~~~~~~~~ 140 (192)
T cd01889 67 NLQITLVDCPGHASLIRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVI-GEILC-----KKLIVVLNKIDLIPEEERER 140 (192)
T ss_pred CceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccHHHHHHHHH-HHHcC-----CCEEEEEECcccCCHHHHHH
Confidence 455566655532 23468999999987544333333321 11222 899999999998632211
Q ss_pred cHHHHHH-HHHH------hCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 82 TLERHAK-LAQS------LHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 82 ~~~~~~~-~~~~------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
..++... +... .+++++.+||+++.|++++++.+...+.-
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~vi~iSa~~g~gi~~L~~~l~~~~~~ 187 (192)
T cd01889 141 KIEKMKKKLQKTLEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHHHHHHHHHHHHhcCcCCCCEEEEeccCCCCHHHHHHHHHhcccc
Confidence 1112222 1111 25689999999999999999999988753
No 180
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=98.99 E-value=3.6e-09 Score=88.36 Aligned_cols=87 Identities=14% Similarity=0.063 Sum_probs=64.6
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC---eEEEEeCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL---HSFAVSART 104 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~ 104 (158)
.++++|+|+|+++..+++....|...+. .+ +|+++|+||+|+.... .......+.+.++. .++++||++
T Consensus 93 ~aD~aILVvDat~g~~~qt~~~~~~~~~-~~-----ipiIiViNKiDl~~~~--~~~~~~el~~~lg~~~~~vi~vSAkt 164 (595)
T TIGR01393 93 ACEGALLLVDAAQGIEAQTLANVYLALE-ND-----LEIIPVINKIDLPSAD--PERVKKEIEEVIGLDASEAILASAKT 164 (595)
T ss_pred hCCEEEEEecCCCCCCHhHHHHHHHHHH-cC-----CCEEEEEECcCCCccC--HHHHHHHHHHHhCCCcceEEEeeccC
Confidence 4567999999998777777666665443 22 8999999999986422 12233455555665 489999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2600 105 GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~ 122 (158)
|.||.++|+.+.+.+...
T Consensus 165 G~GI~~Lle~I~~~lp~p 182 (595)
T TIGR01393 165 GIGIEEILEAIVKRVPPP 182 (595)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 999999999999887654
No 181
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=98.99 E-value=3.8e-09 Score=90.42 Aligned_cols=79 Identities=9% Similarity=-0.055 Sum_probs=60.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|.++.+. ...|..++.+.. +|+++|.||+|+.+.+.+ ..+.+.+.+.+|++++.+||.++.|++++
T Consensus 89 vI~VvDat~ler---~l~l~~ql~e~g-----iPvIvVlNK~Dl~~~~~i-~id~~~L~~~LG~pVvpiSA~~g~GIdeL 159 (772)
T PRK09554 89 LINVVDASNLER---NLYLTLQLLELG-----IPCIVALNMLDIAEKQNI-RIDIDALSARLGCPVIPLVSTRGRGIEAL 159 (772)
T ss_pred EEEEecCCcchh---hHHHHHHHHHcC-----CCEEEEEEchhhhhccCc-HHHHHHHHHHhCCCEEEEEeecCCCHHHH
Confidence 788888876433 233555555544 899999999998654444 34667788889999999999999999999
Q ss_pred HHHHHHHH
Q psy2600 112 TRTPEINP 119 (158)
Q Consensus 112 f~~l~~~~ 119 (158)
++.+.+..
T Consensus 160 ~~~I~~~~ 167 (772)
T PRK09554 160 KLAIDRHQ 167 (772)
T ss_pred HHHHHHhh
Confidence 99988764
No 182
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=98.98 E-value=3.7e-09 Score=85.03 Aligned_cols=80 Identities=20% Similarity=0.120 Sum_probs=54.3
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHH
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCW 109 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 109 (158)
.+++|+|.++..+..+ ..+...+++.. +|+++|+||+|+..... .... ...+|. +++++||..|.|+.
T Consensus 81 ~vl~vvD~~~~~~~~d-~~i~~~l~~~~-----~piilVvNK~D~~~~~~----~~~~-~~~lg~~~~~~vSa~~g~gv~ 149 (429)
T TIGR03594 81 VILFVVDGREGLTPED-EEIAKWLRKSG-----KPVILVANKIDGKKEDA----VAAE-FYSLGFGEPIPISAEHGRGIG 149 (429)
T ss_pred EEEEEEeCCCCCCHHH-HHHHHHHHHhC-----CCEEEEEECccCCcccc----cHHH-HHhcCCCCeEEEeCCcCCChH
Confidence 3899999876433222 12223333332 89999999999864322 1112 234565 68999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++++.+.+.+..
T Consensus 150 ~ll~~i~~~l~~ 161 (429)
T TIGR03594 150 DLLDAILELLPE 161 (429)
T ss_pred HHHHHHHHhcCc
Confidence 999999988754
No 183
>KOG0075|consensus
Probab=98.97 E-value=2.5e-09 Score=73.12 Aligned_cols=102 Identities=11% Similarity=0.098 Sum_probs=75.8
Q ss_pred CcceEEEEEEECCCCCCe-----------EEEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCcc
Q psy2600 13 NYEIQLKVVLLGDPSCGK-----------IVIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRV 80 (158)
Q Consensus 13 ~~~~~~ki~~~G~~~vgk-----------~~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~ 80 (158)
...+++|++.+|....-+ +++||.|++|++.++-.+.-+..+.... -.. +|+++.|||.|++..-
T Consensus 62 kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~k~~~sr~EL~~LL~k~~l~g--ip~LVLGnK~d~~~AL- 138 (186)
T KOG0075|consen 62 KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTG--IPLLVLGNKIDLPGAL- 138 (186)
T ss_pred cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcccchhhHHHHHHHhcchhhcC--CcEEEecccccCcccc-
Confidence 456899999999987554 4999999999888877776666665222 223 9999999999987522
Q ss_pred ccHHHHHHHHHHh--------CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 81 VTLERHAKLAQSL--------HLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 81 ~~~~~~~~~~~~~--------~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
.. +.+...+ .++.|.+||++..|++.+.+++++....
T Consensus 139 -~~---~~li~rmgL~sitdREvcC~siScke~~Nid~~~~Wli~hsk~ 183 (186)
T KOG0075|consen 139 -SK---IALIERMGLSSITDREVCCFSISCKEKVNIDITLDWLIEHSKS 183 (186)
T ss_pred -cH---HHHHHHhCccccccceEEEEEEEEcCCccHHHHHHHHHHHhhh
Confidence 22 2233333 3467999999999999999999987643
No 184
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=98.96 E-value=2.9e-09 Score=90.75 Aligned_cols=78 Identities=22% Similarity=0.157 Sum_probs=52.7
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 109 (158)
+|+|+|.++. +.... .|...++... +|+++|+||+|+.... .....+. .++. ..+++||++|.||.
T Consensus 358 iL~VvDa~~~--~~~~d~~i~~~Lr~~~-----~pvIlV~NK~D~~~~~----~~~~~~~-~lg~~~~~~iSA~~g~GI~ 425 (712)
T PRK09518 358 VVFVVDGQVG--LTSTDERIVRMLRRAG-----KPVVLAVNKIDDQASE----YDAAEFW-KLGLGEPYPISAMHGRGVG 425 (712)
T ss_pred EEEEEECCCC--CCHHHHHHHHHHHhcC-----CCEEEEEECcccccch----hhHHHHH-HcCCCCeEEEECCCCCCch
Confidence 7888888652 22222 4555555433 9999999999985421 1112221 2332 36799999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++|+.+++.+..
T Consensus 426 eLl~~i~~~l~~ 437 (712)
T PRK09518 426 DLLDEALDSLKV 437 (712)
T ss_pred HHHHHHHHhccc
Confidence 999999988755
No 185
>PRK12288 GTPase RsgA; Reviewed
Probab=98.95 E-value=5e-09 Score=82.23 Aligned_cols=103 Identities=13% Similarity=0.098 Sum_probs=71.7
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc-cHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV-TLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
|.+++|++++...++..+..|+..+.... +|.++|+||+|+...... .........+..+..++++||+++.|+
T Consensus 122 D~vlIV~s~~p~~s~~~Ldr~L~~a~~~~-----i~~VIVlNK~DL~~~~~~~~~~~~~~~y~~~g~~v~~vSA~tg~Gi 196 (347)
T PRK12288 122 DQIVIVSAVLPELSLNIIDRYLVACETLG-----IEPLIVLNKIDLLDDEGRAFVNEQLDIYRNIGYRVLMVSSHTGEGL 196 (347)
T ss_pred cEEEEEEeCCCCCCHHHHHHHHHHHHhcC-----CCEEEEEECccCCCcHHHHHHHHHHHHHHhCCCeEEEEeCCCCcCH
Confidence 77999999988889999999988665433 888999999999643211 111222333456889999999999999
Q ss_pred HHHHHHHHHHHHHhHhhccccccccccccccccccccc
Q psy2600 109 WVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTFYMAV 146 (158)
Q Consensus 109 ~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (158)
+++++.+...+ ..+...+|..+.++...+
T Consensus 197 deL~~~L~~ki---------~~~vG~sgVGKSTLiN~L 225 (347)
T PRK12288 197 EELEAALTGRI---------SIFVGQSGVGKSSLINAL 225 (347)
T ss_pred HHHHHHHhhCC---------EEEECCCCCCHHHHHHHh
Confidence 99999886532 234445555554444443
No 186
>PRK00093 GTP-binding protein Der; Reviewed
Probab=98.94 E-value=6.8e-09 Score=83.73 Aligned_cols=76 Identities=21% Similarity=0.169 Sum_probs=51.1
Q ss_pred EEEEEEECCChhHHh--hHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe-EEEEeCCCCCC
Q psy2600 31 IVIFMYDITSGQSFH--SIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH-SFAVSARTGDN 107 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~--~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 107 (158)
.+|+|+|.++..+.. .+..|+.. .. .|+++|+||+|+... ......+ ..+++. ++++||++|.|
T Consensus 83 ~il~vvd~~~~~~~~~~~~~~~l~~---~~-----~piilv~NK~D~~~~----~~~~~~~-~~lg~~~~~~iSa~~g~g 149 (435)
T PRK00093 83 VILFVVDGRAGLTPADEEIAKILRK---SN-----KPVILVVNKVDGPDE----EADAYEF-YSLGLGEPYPISAEHGRG 149 (435)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHH---cC-----CcEEEEEECccCccc----hhhHHHH-HhcCCCCCEEEEeeCCCC
Confidence 388999987743322 22344433 22 899999999997531 1122222 345653 89999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINP 119 (158)
Q Consensus 108 i~~lf~~l~~~~ 119 (158)
+.++|+.++...
T Consensus 150 v~~l~~~I~~~~ 161 (435)
T PRK00093 150 IGDLLDAILEEL 161 (435)
T ss_pred HHHHHHHHHhhC
Confidence 999999998743
No 187
>KOG1489|consensus
Probab=98.91 E-value=1e-08 Score=78.31 Aligned_cols=83 Identities=20% Similarity=0.270 Sum_probs=65.6
Q ss_pred EEEEEECCCh---hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCC
Q psy2600 32 VIFMYDITSG---QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 107 (158)
++||.|++.. ..++++.....++..+.....+.|.++|+||+|+++.+ .....++++.+.- .++.+||+.+++
T Consensus 278 l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae---~~~l~~L~~~lq~~~V~pvsA~~~eg 354 (366)
T KOG1489|consen 278 LLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAE---KNLLSSLAKRLQNPHVVPVSAKSGEG 354 (366)
T ss_pred EEEEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhHH---HHHHHHHHHHcCCCcEEEeeeccccc
Confidence 8999999988 88888888888888777665569999999999986321 1223567777653 499999999999
Q ss_pred HHHHHHHHHH
Q psy2600 108 CWVNTRTPEI 117 (158)
Q Consensus 108 i~~lf~~l~~ 117 (158)
++++.+.+-.
T Consensus 355 l~~ll~~lr~ 364 (366)
T KOG1489|consen 355 LEELLNGLRE 364 (366)
T ss_pred hHHHHHHHhh
Confidence 9999887754
No 188
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=98.91 E-value=8.3e-09 Score=79.50 Aligned_cols=92 Identities=16% Similarity=0.036 Sum_probs=66.7
Q ss_pred EEEEEECCChh---HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEE-EeCCCCCC
Q psy2600 32 VIFMYDITSGQ---SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFA-VSARTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~---s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~-~Sa~~~~~ 107 (158)
+++|.|++..+ ..+++.....++..|.....+.|.++|+||+|+....+........+.+..+...+. +||.++.|
T Consensus 241 L~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~~g 320 (369)
T COG0536 241 LLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTREG 320 (369)
T ss_pred eEEEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCcCHHHHHHHHHHHHHhcCCCcceeeehhcccC
Confidence 88999998644 477777888888877765555999999999996543332233334444444544222 99999999
Q ss_pred HHHHHHHHHHHHHHhH
Q psy2600 108 CWVNTRTPEINPLKYL 123 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~ 123 (158)
++++...+.+.+.+..
T Consensus 321 ~~~L~~~~~~~l~~~~ 336 (369)
T COG0536 321 LDELLRALAELLEETK 336 (369)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999998887764
No 189
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.89 E-value=1e-08 Score=78.63 Aligned_cols=81 Identities=15% Similarity=0.054 Sum_probs=62.6
Q ss_pred eEEEEEEECCChh-HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 30 KIVIFMYDITSGQ-SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 30 k~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
|.+++|+|++++. ++..+..|+..+...+ +|+++|+||+||..... ...........+.+++.+||+++.|+
T Consensus 80 D~vllV~d~~~p~~s~~~ldr~L~~~~~~~-----ip~iIVlNK~DL~~~~~--~~~~~~~~~~~g~~v~~vSA~~g~gi 152 (287)
T cd01854 80 DQLVIVVSLNEPFFNPRLLDRYLVAAEAAG-----IEPVIVLTKADLLDDEE--EELELVEALALGYPVLAVSAKTGEGL 152 (287)
T ss_pred CEEEEEEEcCCCCCCHHHHHHHHHHHHHcC-----CCEEEEEEHHHCCChHH--HHHHHHHHHhCCCeEEEEECCCCccH
Confidence 6699999999887 8888888988777544 89999999999964311 11223334456888999999999999
Q ss_pred HHHHHHHHH
Q psy2600 109 WVNTRTPEI 117 (158)
Q Consensus 109 ~~lf~~l~~ 117 (158)
++++..+..
T Consensus 153 ~~L~~~L~~ 161 (287)
T cd01854 153 DELREYLKG 161 (287)
T ss_pred HHHHhhhcc
Confidence 999987764
No 190
>PRK00098 GTPase RsgA; Reviewed
Probab=98.89 E-value=8.3e-09 Score=79.51 Aligned_cols=82 Identities=12% Similarity=0.077 Sum_probs=60.7
Q ss_pred CeEEEEEEECCChhHHhh-HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHS-IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
.|.+++|+|++++.++.. +..|+..+.... +|+++|+||+|+..... .........+.++.+++.+||+++.|
T Consensus 81 iD~vllV~d~~~p~~~~~~idr~L~~~~~~~-----ip~iIVlNK~DL~~~~~-~~~~~~~~~~~~g~~v~~vSA~~g~g 154 (298)
T PRK00098 81 VDQAVLVFAAKEPDFSTDLLDRFLVLAEANG-----IKPIIVLNKIDLLDDLE-EARELLALYRAIGYDVLELSAKEGEG 154 (298)
T ss_pred CCEEEEEEECCCCCCCHHHHHHHHHHHHHCC-----CCEEEEEEhHHcCCCHH-HHHHHHHHHHHCCCeEEEEeCCCCcc
Confidence 367999999988876555 467877766433 89999999999953221 12233444556788899999999999
Q ss_pred HHHHHHHHH
Q psy2600 108 CWVNTRTPE 116 (158)
Q Consensus 108 i~~lf~~l~ 116 (158)
+++++..+.
T Consensus 155 i~~L~~~l~ 163 (298)
T PRK00098 155 LDELKPLLA 163 (298)
T ss_pred HHHHHhhcc
Confidence 999998764
No 191
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.87 E-value=1.1e-08 Score=71.39 Aligned_cols=85 Identities=18% Similarity=0.101 Sum_probs=56.7
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
.|.+++|+|++++....+ ..+...+.... .|+++|+||+|+...... .....+.+..+.+++.+||+++.|+
T Consensus 13 aD~vl~V~D~~~~~~~~~-~~l~~~~~~~~-----~p~iiv~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSa~~~~gi 84 (156)
T cd01859 13 SDVVLEVLDARDPELTRS-RKLERYVLELG-----KKLLIVLNKADLVPKEVL--EKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred CCEEEEEeeCCCCcccCC-HHHHHHHHhCC-----CcEEEEEEhHHhCCHHHH--HHHHHHHHhCCCcEEEEEccccccH
Confidence 477899999987543332 12222222222 899999999998532111 1111233445677899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2600 109 WVNTRTPEINPLK 121 (158)
Q Consensus 109 ~~lf~~l~~~~~~ 121 (158)
+++++.+.+.+..
T Consensus 85 ~~L~~~l~~~~~~ 97 (156)
T cd01859 85 KILRRTIKELAKI 97 (156)
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887753
No 192
>PRK12289 GTPase RsgA; Reviewed
Probab=98.87 E-value=1.3e-08 Score=79.91 Aligned_cols=82 Identities=10% Similarity=0.084 Sum_probs=59.2
Q ss_pred eEEEEEEECCChh-HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 30 KIVIFMYDITSGQ-SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 30 k~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
|.+++|+|++++. ++..+..|+..+.... +|+++|+||+||...... .......+.+|+.++.+||.++.|+
T Consensus 91 D~vLlV~d~~~p~~~~~~LdR~L~~a~~~~-----ip~ILVlNK~DLv~~~~~--~~~~~~~~~~g~~v~~iSA~tg~GI 163 (352)
T PRK12289 91 DQILLVFALAEPPLDPWQLSRFLVKAESTG-----LEIVLCLNKADLVSPTEQ--QQWQDRLQQWGYQPLFISVETGIGL 163 (352)
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHHCC-----CCEEEEEEchhcCChHHH--HHHHHHHHhcCCeEEEEEcCCCCCH
Confidence 4599999998765 4445677777664333 899999999998642211 1222233467888999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 109 WVNTRTPEIN 118 (158)
Q Consensus 109 ~~lf~~l~~~ 118 (158)
+++++.+...
T Consensus 164 ~eL~~~L~~k 173 (352)
T PRK12289 164 EALLEQLRNK 173 (352)
T ss_pred HHHhhhhccc
Confidence 9999988653
No 193
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=98.86 E-value=1.4e-08 Score=73.94 Aligned_cols=89 Identities=11% Similarity=0.005 Sum_probs=54.5
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc--HHHHHHHHHHh---CCeEEEEeC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT--LERHAKLAQSL---HLHSFAVSA 102 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~---~~~~~~~Sa 102 (158)
..|.+++|+|++++.........+..+..... .|+++|+||+|+....... .+....+.+.+ +.+++.+||
T Consensus 106 ~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~----~~iiivvNK~Dl~~~~~~~~~~~~i~~~~~~~~~~~~~i~~vSA 181 (203)
T cd01888 106 VMDGALLLIAANEPCPQPQTSEHLAALEIMGL----KHIIIVQNKIDLVKEEQALENYEQIKKFVKGTIAENAPIIPISA 181 (203)
T ss_pred cCCEEEEEEECCCCCCCcchHHHHHHHHHcCC----CcEEEEEEchhccCHHHHHHHHHHHHHHHhccccCCCcEEEEeC
Confidence 34789999999873211111112222222221 5789999999986422111 12222333322 567999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~ 120 (158)
++|.|++++|+.+.+.+.
T Consensus 182 ~~g~gi~~L~~~l~~~l~ 199 (203)
T cd01888 182 QLKYNIDVLLEYIVKKIP 199 (203)
T ss_pred CCCCCHHHHHHHHHHhCC
Confidence 999999999999987654
No 194
>KOG0076|consensus
Probab=98.85 E-value=6.6e-09 Score=72.87 Aligned_cols=87 Identities=21% Similarity=0.153 Sum_probs=65.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHH---HHHh---CCeEEEEeCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKL---AQSL---HLHSFAVSART 104 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~---~~~~~~~Sa~~ 104 (158)
+++++|+++++.|+.....++.+..+ .-.+ .|+++.+||.|+.+.... .+.... ++.. ...+..+||.+
T Consensus 96 ii~viDa~~~eR~~~~~t~~~~v~~~E~leg--~p~L~lankqd~q~~~~~--~El~~~~~~~e~~~~rd~~~~pvSal~ 171 (197)
T KOG0076|consen 96 IIYVIDATDRERFEESKTAFEKVVENEKLEG--APVLVLANKQDLQNAMEA--AELDGVFGLAELIPRRDNPFQPVSALT 171 (197)
T ss_pred eEEeecCCCHHHHHHHHHHHHHHHHHHHhcC--CchhhhcchhhhhhhhhH--HHHHHHhhhhhhcCCccCccccchhhh
Confidence 99999999999999887666666532 2233 999999999999764332 233332 2322 35689999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2600 105 GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~ 122 (158)
|.||++...++++.+...
T Consensus 172 gegv~egi~w~v~~~~kn 189 (197)
T KOG0076|consen 172 GEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred cccHHHHHHHHHHHHhhc
Confidence 999999999999988765
No 195
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=98.84 E-value=1.4e-08 Score=81.12 Aligned_cols=79 Identities=15% Similarity=0.105 Sum_probs=52.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|.+.+.+-.+. ..+. . ...+ .|+++|.||+||....... ...-..+..++.+||+++.|+++|
T Consensus 300 vL~v~D~~~~~~~~d~-~~~~-~---~~~~--~~~i~v~NK~DL~~~~~~~-----~~~~~~~~~~i~iSa~t~~Gl~~L 367 (454)
T COG0486 300 VLFVLDASQPLDKEDL-ALIE-L---LPKK--KPIIVVLNKADLVSKIELE-----SEKLANGDAIISISAKTGEGLDAL 367 (454)
T ss_pred EEEEEeCCCCCchhhH-HHHH-h---cccC--CCEEEEEechhcccccccc-----hhhccCCCceEEEEecCccCHHHH
Confidence 9999999885222211 1222 1 1222 8999999999997543211 111122456899999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
.+.|.+.+...
T Consensus 368 ~~~i~~~~~~~ 378 (454)
T COG0486 368 REAIKQLFGKG 378 (454)
T ss_pred HHHHHHHHhhc
Confidence 99998887654
No 196
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.83 E-value=2.3e-08 Score=69.39 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=50.0
Q ss_pred EEEEEEECCChh--HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHHHHHHHH--HhCCeEEEEeCCC
Q psy2600 31 IVIFMYDITSGQ--SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLERHAKLAQ--SLHLHSFAVSART 104 (158)
Q Consensus 31 ~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~--~~~~~~~~~Sa~~ 104 (158)
.+++++|.+... ....+..|+... . .|+++|+||+|+...... .........+ ....+++++||++
T Consensus 84 ~~~~v~d~~~~~~~~~~~~~~~l~~~---~-----~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Sa~~ 155 (170)
T cd01876 84 GVVLLIDSRHGPTEIDLEMLDWLEEL---G-----IPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLK 155 (170)
T ss_pred EEEEEEEcCcCCCHhHHHHHHHHHHc---C-----CCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceEEEecCC
Confidence 367888876542 222233444432 2 799999999998532211 1111222222 2335789999999
Q ss_pred CCCHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEIN 118 (158)
Q Consensus 105 ~~~i~~lf~~l~~~ 118 (158)
+.++.++++.+.+.
T Consensus 156 ~~~~~~l~~~l~~~ 169 (170)
T cd01876 156 GQGIDELRALIEKW 169 (170)
T ss_pred CCCHHHHHHHHHHh
Confidence 99999999999875
No 197
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=98.83 E-value=2.2e-08 Score=72.09 Aligned_cols=107 Identities=19% Similarity=0.133 Sum_probs=66.5
Q ss_pred CCCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHH-----HHhCC---eEE
Q psy2600 27 SCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA-----QSLHL---HSF 98 (158)
Q Consensus 27 ~vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~---~~~ 98 (158)
.-.+.+++|+|+++... .|...+.... .+ .|+++|+||+|+..... .......+. +..+. .++
T Consensus 33 ~~ad~il~VvD~~~~~~-----~~~~~l~~~~-~~--~~~ilV~NK~Dl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~ 103 (190)
T cd01855 33 PKKALVVHVVDIFDFPG-----SLIPRLRLFG-GN--NPVILVGNKIDLLPKDK-NLVRIKNWLRAKAAAGLGLKPKDVI 103 (190)
T ss_pred cCCcEEEEEEECccCCC-----ccchhHHHhc-CC--CcEEEEEEchhcCCCCC-CHHHHHHHHHHHHHhhcCCCcccEE
Confidence 34578999999987532 1223332111 12 89999999999864322 223333333 22332 589
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHhHhhccccccccccccccccccccc
Q psy2600 99 AVSARTGDNCWVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTFYMAV 146 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (158)
.+||+++.|++++++.+.+.+.. .........++..+.++....
T Consensus 104 ~vSA~~~~gi~eL~~~l~~~l~~----~~~~~~~G~~nvGKStliN~l 147 (190)
T cd01855 104 LISAKKGWGVEELINAIKKLAKK----GGDVYVVGATNVGKSTLINAL 147 (190)
T ss_pred EEECCCCCCHHHHHHHHHHHhhc----CCcEEEEcCCCCCHHHHHHHH
Confidence 99999999999999999887742 223344455565555544443
No 198
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=98.82 E-value=1.8e-08 Score=71.87 Aligned_cols=73 Identities=14% Similarity=0.037 Sum_probs=43.6
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc--ccHHHHHHHHHHhC--CeEEEEeCCCCC
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV--VTLERHAKLAQSLH--LHSFAVSARTGD 106 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~--~~~~~~Sa~~~~ 106 (158)
++++|+|.+++-+.... .++..+.... +|+++|+||+|+..... ...++.+......+ ..++++||++|.
T Consensus 103 ~ii~vvd~~~~~~~~~~-~~~~~~~~~~-----~pviiv~nK~D~~~~~~~~~~~~~i~~~l~~~~~~~~v~~~Sa~~g~ 176 (179)
T TIGR03598 103 GVVLLMDIRHPLKELDL-EMLEWLRERG-----IPVLIVLTKADKLKKSELNKQLKKIKKALKKDADDPSVQLFSSLKKT 176 (179)
T ss_pred EEEEEecCCCCCCHHHH-HHHHHHHHcC-----CCEEEEEECcccCCHHHHHHHHHHHHHHHhhccCCCceEEEECCCCC
Confidence 47777777664333332 2233333322 89999999999863221 11223333444433 479999999999
Q ss_pred CHH
Q psy2600 107 NCW 109 (158)
Q Consensus 107 ~i~ 109 (158)
|++
T Consensus 177 gi~ 179 (179)
T TIGR03598 177 GID 179 (179)
T ss_pred CCC
Confidence 973
No 199
>COG1160 Predicted GTPases [General function prediction only]
Probab=98.82 E-value=3.1e-08 Score=78.90 Aligned_cols=78 Identities=21% Similarity=0.090 Sum_probs=50.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 110 (158)
+|||.|....-+-++ ....+.++... +|+++|+||+|-.. .+....-.-.+|+ .++.+||..|.|+.+
T Consensus 87 ilfvVD~~~Git~~D-~~ia~~Lr~~~-----kpviLvvNK~D~~~-----~e~~~~efyslG~g~~~~ISA~Hg~Gi~d 155 (444)
T COG1160 87 ILFVVDGREGITPAD-EEIAKILRRSK-----KPVILVVNKIDNLK-----AEELAYEFYSLGFGEPVPISAEHGRGIGD 155 (444)
T ss_pred EEEEEeCCCCCCHHH-HHHHHHHHhcC-----CCEEEEEEcccCch-----hhhhHHHHHhcCCCCceEeehhhccCHHH
Confidence 889998754211111 12223333222 89999999999542 1222222234564 489999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 111 NTRTPEINPL 120 (158)
Q Consensus 111 lf~~l~~~~~ 120 (158)
|.+.+++.+.
T Consensus 156 Lld~v~~~l~ 165 (444)
T COG1160 156 LLDAVLELLP 165 (444)
T ss_pred HHHHHHhhcC
Confidence 9999999974
No 200
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.81 E-value=4.8e-08 Score=72.78 Aligned_cols=49 Identities=24% Similarity=0.046 Sum_probs=39.0
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
+|+++|+||+|+.. .++...+++. ..++++||+++.|++++|+.+.+.+
T Consensus 177 ~p~iiV~NK~Dl~~-----~~~~~~~~~~--~~~~~~SA~~g~gi~~l~~~i~~~L 225 (233)
T cd01896 177 IPCLYVYNKIDLIS-----IEELDLLARQ--PNSVVISAEKGLNLDELKERIWDKL 225 (233)
T ss_pred eeEEEEEECccCCC-----HHHHHHHhcC--CCEEEEcCCCCCCHHHHHHHHHHHh
Confidence 79999999999853 3344445443 4589999999999999999998865
No 201
>COG1159 Era GTPase [General function prediction only]
Probab=98.81 E-value=3.4e-08 Score=74.92 Aligned_cols=83 Identities=24% Similarity=0.193 Sum_probs=53.9
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~ 109 (158)
++||.|+++. +.... ..++.++... .|++++.||+|.......-......+..... ...+.+||+.|.|+.
T Consensus 89 ilfvvd~~~~--~~~~d~~il~~lk~~~-----~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~ 161 (298)
T COG1159 89 ILFVVDADEG--WGPGDEFILEQLKKTK-----TPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVD 161 (298)
T ss_pred EEEEEecccc--CCccHHHHHHHHhhcC-----CCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHH
Confidence 8899998762 22232 3344444422 8999999999976543311122222222332 468999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
.+.+.+...+.+
T Consensus 162 ~L~~~i~~~Lpe 173 (298)
T COG1159 162 TLLEIIKEYLPE 173 (298)
T ss_pred HHHHHHHHhCCC
Confidence 999988887754
No 202
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=98.80 E-value=7.5e-08 Score=69.21 Aligned_cols=85 Identities=19% Similarity=0.110 Sum_probs=55.7
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHH----HHHHHhC------CeE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA----KLAQSLH------LHS 97 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~----~~~~~~~------~~~ 97 (158)
..|++|+|.|+.+.-... ....+..+...+ +|+++|.||+|+...+ . .+... .+.+..+ .++
T Consensus 93 ~~D~ailvVda~~g~~~~-~~~~l~~~~~~~-----~p~ivvlNK~D~~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~v 164 (188)
T PF00009_consen 93 QADIAILVVDANDGIQPQ-TEEHLKILRELG-----IPIIVVLNKMDLIEKE-L-EEIIEEIKEKLLKEYGENGEEIVPV 164 (188)
T ss_dssp TSSEEEEEEETTTBSTHH-HHHHHHHHHHTT------SEEEEEETCTSSHHH-H-HHHHHHHHHHHHHHTTSTTTSTEEE
T ss_pred ccccceeeeecccccccc-cccccccccccc-----cceEEeeeeccchhhh-H-HHHHHHHHHHhccccccCccccceE
Confidence 557799999998653322 233444444444 8899999999986211 1 11122 2333332 469
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+.+||.+|.|+.+|++.+.+.++
T Consensus 165 i~~Sa~~g~gi~~Ll~~l~~~~P 187 (188)
T PF00009_consen 165 IPISALTGDGIDELLEALVELLP 187 (188)
T ss_dssp EEEBTTTTBTHHHHHHHHHHHS-
T ss_pred EEEecCCCCCHHHHHHHHHHhCc
Confidence 99999999999999999988764
No 203
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=98.78 E-value=3.6e-08 Score=65.48 Aligned_cols=80 Identities=25% Similarity=0.263 Sum_probs=57.5
Q ss_pred EEEEEECCCCCCeE-----------------------------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCC
Q psy2600 18 LKVVLLGDPSCGKI-----------------------------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSST 62 (158)
Q Consensus 18 ~ki~~~G~~~vgk~-----------------------------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~ 62 (158)
+|++++|+.++||+ +++||+.++.++++.+ |...+.......
T Consensus 1 ~kvv~~G~~gvGKt~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~~s~~~~~~v~~~~~~~s~~~~--~~~~i~~~~k~d- 77 (124)
T smart00010 1 FKVVGIGDSGVGKVGKSARFVQFPFDYVPTVFTIGIDVYDPTSYESFDVVLQCWRVDDRDSADNK--NVPEVLVGNKSD- 77 (124)
T ss_pred CEEEEECCCChhHHHHHHHHhcCCccccCceehhhhhhccccccCCCCEEEEEEEccCHHHHHHH--hHHHHHhcCCCC-
Confidence 47888888888887 6677999999998766 887776443333
Q ss_pred CcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 63 PTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 63 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+|.++++||+|+.....+.. ..+..|+++|++++.|+.
T Consensus 78 -l~~~~~~nk~dl~~~~~~~~--------~~~~~~~~~s~~~~~~~~ 115 (124)
T smart00010 78 -LPILVGGNRDVLEEERQVAT--------EEGLEFAETSAKTPEEGE 115 (124)
T ss_pred -CcEEEEeechhhHhhCcCCH--------HHHHHHHHHhCCCcchhh
Confidence 88999999999853223322 222345677899999874
No 204
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=98.78 E-value=5e-08 Score=81.46 Aligned_cols=85 Identities=15% Similarity=0.090 Sum_probs=58.5
Q ss_pred CeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCccc--cHHHHHHHHHHh----CCeEE
Q psy2600 29 GKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVV--TLERHAKLAQSL----HLHSF 98 (158)
Q Consensus 29 gk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~ 98 (158)
.|.+++|+|+++ +++++.+. .+.... +| +++|+||+|+.....+ ..++...+.+.. +.+++
T Consensus 74 aD~aILVVDa~~G~~~qT~ehl~----il~~lg-----i~~iIVVlNK~Dlv~~~~~~~~~~ei~~~l~~~~~~~~~~ii 144 (581)
T TIGR00475 74 IDAALLVVDADEGVMTQTGEHLA----VLDLLG-----IPHTIVVITKADRVNEEEIKRTEMFMKQILNSYIFLKNAKIF 144 (581)
T ss_pred CCEEEEEEECCCCCcHHHHHHHH----HHHHcC-----CCeEEEEEECCCCCCHHHHHHHHHHHHHHHHHhCCCCCCcEE
Confidence 467999999987 45554432 223222 66 9999999998643322 122344444444 46799
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 99 AVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
++||++|.|+.+++..+...+...
T Consensus 145 ~vSA~tG~GI~eL~~~L~~l~~~~ 168 (581)
T TIGR00475 145 KTSAKTGQGIGELKKELKNLLESL 168 (581)
T ss_pred EEeCCCCCCchhHHHHHHHHHHhC
Confidence 999999999999999988776543
No 205
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=98.78 E-value=5e-08 Score=66.59 Aligned_cols=83 Identities=22% Similarity=0.088 Sum_probs=57.2
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHH---HHHHHHHhCCeEEEEeCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLER---HAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~---~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
+.+++|+|.++..+..... |........ .|+++|+||+|+.......... ........+.+++++||+++.
T Consensus 77 d~il~v~~~~~~~~~~~~~-~~~~~~~~~-----~~~ivv~nK~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 150 (163)
T cd00880 77 DLILFVVDADLRADEEEEK-LLELLRERG-----KPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGE 150 (163)
T ss_pred CEEEEEEeCCCCCCHHHHH-HHHHHHhcC-----CeEEEEEEccccCChhhHHHHHHHHHhhcccccCCceEEEeeeccC
Confidence 4599999999876655544 444444333 8999999999986533221110 112222335789999999999
Q ss_pred CHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEIN 118 (158)
Q Consensus 107 ~i~~lf~~l~~~ 118 (158)
|++++++.+.+.
T Consensus 151 ~v~~l~~~l~~~ 162 (163)
T cd00880 151 GIDELREALIEA 162 (163)
T ss_pred CHHHHHHHHHhh
Confidence 999999998875
No 206
>KOG1423|consensus
Probab=98.78 E-value=5.7e-08 Score=74.04 Aligned_cols=112 Identities=19% Similarity=0.196 Sum_probs=75.7
Q ss_pred cccccccCCCCcceEEEEEEECCCCCCeE---------------------------------------------------
Q psy2600 3 EVKMLNLHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------- 31 (158)
Q Consensus 3 ~~~~~~~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------- 31 (158)
....+++++++....+.++++|.+|+||+
T Consensus 58 pa~~esrde~e~~k~L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r 137 (379)
T KOG1423|consen 58 PAALESRDEEEAQKSLYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHR 137 (379)
T ss_pred cccccCCCchhcceEEEEEEEcCCCcchhhhhhHhhCCccccccccccceeeeeeEEEecCceEEEEecCCcccccchhh
Confidence 34456677777778899999999999998
Q ss_pred ---------------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc---------
Q psy2600 32 ---------------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--------- 81 (158)
Q Consensus 32 ---------------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--------- 81 (158)
+++++|++++...-+ ...+..++.+.. +|-++|.||+|......+
T Consensus 138 ~~~l~~s~lq~~~~a~q~AD~vvVv~Das~tr~~l~-p~vl~~l~~ys~----ips~lvmnkid~~k~k~~Ll~l~~~Lt 212 (379)
T KOG1423|consen 138 RHHLMMSVLQNPRDAAQNADCVVVVVDASATRTPLH-PRVLHMLEEYSK----IPSILVMNKIDKLKQKRLLLNLKDLLT 212 (379)
T ss_pred hHHHHHHhhhCHHHHHhhCCEEEEEEeccCCcCccC-hHHHHHHHHHhc----CCceeeccchhcchhhhHHhhhHHhcc
Confidence 889999987433222 233444554443 899999999997432221
Q ss_pred ----cHHHHHHHHHHh-------------CC----eEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 82 ----TLERHAKLAQSL-------------HL----HSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 82 ----~~~~~~~~~~~~-------------~~----~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
.. ...++.++. |+ .+|.+||++|+||+++.++|...+.
T Consensus 213 ~g~l~~-~kl~v~~~f~~~p~~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~ 271 (379)
T KOG1423|consen 213 NGELAK-LKLEVQEKFTDVPSDEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAP 271 (379)
T ss_pred ccccch-hhhhHHHHhccCCcccccccccCcccceeEEEEecccccCHHHHHHHHHhcCC
Confidence 10 011122211 11 2799999999999999999987664
No 207
>KOG0071|consensus
Probab=98.75 E-value=3.6e-08 Score=67.04 Aligned_cols=85 Identities=13% Similarity=0.053 Sum_probs=62.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHh-hhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-----HhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-----SLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 105 (158)
+|||.|..+.+..+..++-+..+. ...... .++++.+||.|++... ...+...+.+ ...+.+..++|.+|
T Consensus 88 lIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~--~~~LvlANkQDlp~A~--~pqei~d~leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071|consen 88 LIFVVDSADRDRIEEARNELHRIINDREMRD--AIILILANKQDLPDAM--KPQEIQDKLELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred EEEEEeccchhhHHHHHHHHHHHhCCHhhhc--ceEEEEecCccccccc--CHHHHHHHhccccccCCccEeeccccccc
Confidence 999999999888888877776666 222233 8999999999997533 3444443322 22355788999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPL 120 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~ 120 (158)
.++.+-|.++...+.
T Consensus 164 dgL~eglswlsnn~~ 178 (180)
T KOG0071|consen 164 DGLKEGLSWLSNNLK 178 (180)
T ss_pred hhHHHHHHHHHhhcc
Confidence 999999999987653
No 208
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.75 E-value=3e-08 Score=82.32 Aligned_cols=82 Identities=15% Similarity=-0.034 Sum_probs=61.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
++-|.|+++.+. -....-++.+.. .|++++.|++|+.+.+.+ .-+.+++.+.+|++++.+||++|.|++++
T Consensus 85 ivnVvDAtnLeR---nLyltlQLlE~g-----~p~ilaLNm~D~A~~~Gi-~ID~~~L~~~LGvPVv~tvA~~g~G~~~l 155 (653)
T COG0370 85 IVNVVDATNLER---NLYLTLQLLELG-----IPMILALNMIDEAKKRGI-RIDIEKLSKLLGVPVVPTVAKRGEGLEEL 155 (653)
T ss_pred EEEEcccchHHH---HHHHHHHHHHcC-----CCeEEEeccHhhHHhcCC-cccHHHHHHHhCCCEEEEEeecCCCHHHH
Confidence 777888776432 222233344444 899999999998755544 34677888999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
...+.+.....
T Consensus 156 ~~~i~~~~~~~ 166 (653)
T COG0370 156 KRAIIELAESK 166 (653)
T ss_pred HHHHHHhcccc
Confidence 99998765443
No 209
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=98.74 E-value=1.1e-07 Score=79.30 Aligned_cols=74 Identities=18% Similarity=0.108 Sum_probs=49.2
Q ss_pred EEEEEECCCh---hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-------hC--CeEEE
Q psy2600 32 VIFMYDITSG---QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-------LH--LHSFA 99 (158)
Q Consensus 32 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-------~~--~~~~~ 99 (158)
+++|+|+++. ++++. +..+.... +|+++++||+|+... ..+........ ++ ..+++
T Consensus 162 aILVVda~dgv~~qT~e~----i~~~~~~~-----vPiIVviNKiDl~~~---~~e~v~~~L~~~g~~~~~~~~~~~~v~ 229 (587)
T TIGR00487 162 VVLVVAADDGVMPQTIEA----ISHAKAAN-----VPIIVAINKIDKPEA---NPDRVKQELSEYGLVPEDWGGDTIFVP 229 (587)
T ss_pred EEEEEECCCCCCHhHHHH----HHHHHHcC-----CCEEEEEECcccccC---CHHHHHHHHHHhhhhHHhcCCCceEEE
Confidence 8899998763 33322 22222222 899999999998642 12233333222 22 46899
Q ss_pred EeCCCCCCHHHHHHHHHH
Q psy2600 100 VSARTGDNCWVNTRTPEI 117 (158)
Q Consensus 100 ~Sa~~~~~i~~lf~~l~~ 117 (158)
+||++|.|+.++|+.+..
T Consensus 230 iSAktGeGI~eLl~~I~~ 247 (587)
T TIGR00487 230 VSALTGDGIDELLDMILL 247 (587)
T ss_pred EECCCCCChHHHHHhhhh
Confidence 999999999999999874
No 210
>PRK05433 GTP-binding protein LepA; Provisional
Probab=98.71 E-value=2.3e-07 Score=77.71 Aligned_cols=87 Identities=14% Similarity=0.058 Sum_probs=62.3
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe---EEEEeCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH---SFAVSART 104 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~ 104 (158)
.++++|+|+|+++....+....|..... .. +|+++|+||+|+.... .......+.+.+++. ++.+||++
T Consensus 97 ~aD~aILVVDas~gv~~qt~~~~~~~~~-~~-----lpiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~iSAkt 168 (600)
T PRK05433 97 ACEGALLVVDASQGVEAQTLANVYLALE-ND-----LEIIPVLNKIDLPAAD--PERVKQEIEDVIGIDASDAVLVSAKT 168 (600)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHH-CC-----CCEEEEEECCCCCccc--HHHHHHHHHHHhCCCcceEEEEecCC
Confidence 4567999999998655555555654332 22 8999999999986422 122233444545553 89999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2600 105 GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~ 122 (158)
|.|+.++++.+.+.+...
T Consensus 169 G~GI~~Ll~~I~~~lp~P 186 (600)
T PRK05433 169 GIGIEEVLEAIVERIPPP 186 (600)
T ss_pred CCCHHHHHHHHHHhCccc
Confidence 999999999999888654
No 211
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=98.67 E-value=1.9e-07 Score=65.20 Aligned_cols=82 Identities=20% Similarity=0.191 Sum_probs=53.9
Q ss_pred eEEEEEEECCChhHHhhHHHHHH--HHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVD--LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~--~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
|.+++|+|+.++.+... .|+. .+.... +|+++|.||+|+.....+ ......+.+..+..++.+||+++.|
T Consensus 1 Dvvl~VvD~~~p~~~~~--~~i~~~~~~~~~-----~p~IiVlNK~Dl~~~~~~-~~~~~~~~~~~~~~ii~vSa~~~~g 72 (155)
T cd01849 1 DVILEVLDARDPLGTRS--PDIERVLIKEKG-----KKLILVLNKADLVPKEVL-RKWLAYLRHSYPTIPFKISATNGQG 72 (155)
T ss_pred CEEEEEEeccCCccccC--HHHHHHHHhcCC-----CCEEEEEechhcCCHHHH-HHHHHHHHhhCCceEEEEeccCCcC
Confidence 45789999988765543 2443 222222 899999999998532211 1111223233355689999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINP 119 (158)
Q Consensus 108 i~~lf~~l~~~~ 119 (158)
++++++.+.+..
T Consensus 73 i~~L~~~i~~~~ 84 (155)
T cd01849 73 IEKKESAFTKQT 84 (155)
T ss_pred hhhHHHHHHHHh
Confidence 999999987654
No 212
>COG2262 HflX GTPases [General function prediction only]
Probab=98.66 E-value=2.6e-07 Score=72.81 Aligned_cols=84 Identities=13% Similarity=0.033 Sum_probs=60.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
++.|.|.+++...+.+..-.+-+.+..... +|+|+|.||+|+..... .........-..+.+||+++.|++.|
T Consensus 275 llhVVDaSdp~~~~~~~~v~~vL~el~~~~--~p~i~v~NKiD~~~~~~-----~~~~~~~~~~~~v~iSA~~~~gl~~L 347 (411)
T COG2262 275 LLHVVDASDPEILEKLEAVEDVLAEIGADE--IPIILVLNKIDLLEDEE-----ILAELERGSPNPVFISAKTGEGLDLL 347 (411)
T ss_pred EEEEeecCChhHHHHHHHHHHHHHHcCCCC--CCEEEEEecccccCchh-----hhhhhhhcCCCeEEEEeccCcCHHHH
Confidence 999999999977777665555555544443 99999999999754322 11122221115899999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
+..|...+...
T Consensus 348 ~~~i~~~l~~~ 358 (411)
T COG2262 348 RERIIELLSGL 358 (411)
T ss_pred HHHHHHHhhhc
Confidence 99999988754
No 213
>CHL00189 infB translation initiation factor 2; Provisional
Probab=98.65 E-value=2.8e-07 Score=78.50 Aligned_cols=79 Identities=18% Similarity=0.149 Sum_probs=51.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH-H------HHHhC--CeEEEEeC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-L------AQSLH--LHSFAVSA 102 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~------~~~~~--~~~~~~Sa 102 (158)
+|+|+|+++....+....| ..+.... +|+++++||+|+.... ...... + .+.++ ++++++||
T Consensus 322 aILVVDA~dGv~~QT~E~I-~~~k~~~-----iPiIVViNKiDl~~~~---~e~v~~eL~~~~ll~e~~g~~vpvv~VSA 392 (742)
T CHL00189 322 AILIIAADDGVKPQTIEAI-NYIQAAN-----VPIIVAINKIDKANAN---TERIKQQLAKYNLIPEKWGGDTPMIPISA 392 (742)
T ss_pred EEEEEECcCCCChhhHHHH-HHHHhcC-----ceEEEEEECCCccccC---HHHHHHHHHHhccchHhhCCCceEEEEEC
Confidence 8899998773222222222 2222222 9999999999986421 112211 1 22333 67999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEINP 119 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~ 119 (158)
++|.|+.++|+.+....
T Consensus 393 ktG~GIdeLle~I~~l~ 409 (742)
T CHL00189 393 SQGTNIDKLLETILLLA 409 (742)
T ss_pred CCCCCHHHHHHhhhhhh
Confidence 99999999999998764
No 214
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=98.63 E-value=2.4e-07 Score=79.48 Aligned_cols=77 Identities=17% Similarity=0.136 Sum_probs=51.2
Q ss_pred eEEEEEEECCCh---hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHH-------HHHHHhC--CeE
Q psy2600 30 KIVIFMYDITSG---QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA-------KLAQSLH--LHS 97 (158)
Q Consensus 30 k~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-------~~~~~~~--~~~ 97 (158)
|.+|||+|+++. ++++. | ..+.... +|+|+++||+|+.... ..... .+++.++ +++
T Consensus 362 DiaILVVdAddGv~~qT~e~---i-~~a~~~~-----vPiIVviNKiDl~~a~---~e~V~~eL~~~~~~~e~~g~~vp~ 429 (787)
T PRK05306 362 DIVVLVVAADDGVMPQTIEA---I-NHAKAAG-----VPIIVAINKIDKPGAN---PDRVKQELSEYGLVPEEWGGDTIF 429 (787)
T ss_pred CEEEEEEECCCCCCHhHHHH---H-HHHHhcC-----CcEEEEEECccccccC---HHHHHHHHHHhcccHHHhCCCceE
Confidence 348999999873 33332 2 2222222 8999999999996421 11111 1233344 679
Q ss_pred EEEeCCCCCCHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
+++||++|.||.++|+.+...
T Consensus 430 vpvSAktG~GI~eLle~I~~~ 450 (787)
T PRK05306 430 VPVSAKTGEGIDELLEAILLQ 450 (787)
T ss_pred EEEeCCCCCCchHHHHhhhhh
Confidence 999999999999999998754
No 215
>COG0218 Predicted GTPase [General function prediction only]
Probab=98.61 E-value=3.7e-07 Score=65.79 Aligned_cols=83 Identities=12% Similarity=-0.038 Sum_probs=51.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh----CCe--EEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL----HLH--SFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~~~--~~~~Sa~~~ 105 (158)
++++.|+...-.-.+ ...++.+.+.. +|+++|+||+|.....+. .......++.. ... ++..|+..+
T Consensus 110 vvlliD~r~~~~~~D-~em~~~l~~~~-----i~~~vv~tK~DKi~~~~~-~k~l~~v~~~l~~~~~~~~~~~~~ss~~k 182 (200)
T COG0218 110 VVLLIDARHPPKDLD-REMIEFLLELG-----IPVIVVLTKADKLKKSER-NKQLNKVAEELKKPPPDDQWVVLFSSLKK 182 (200)
T ss_pred EEEEEECCCCCcHHH-HHHHHHHHHcC-----CCeEEEEEccccCChhHH-HHHHHHHHHHhcCCCCccceEEEEecccc
Confidence 888888754322211 23344444444 999999999997643221 11122333332 222 788899999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.|++++...|.+.+..
T Consensus 183 ~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 183 KGIDELKAKILEWLKE 198 (200)
T ss_pred cCHHHHHHHHHHHhhc
Confidence 9999999998877653
No 216
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.59 E-value=1.2e-06 Score=62.12 Aligned_cols=80 Identities=14% Similarity=0.151 Sum_probs=61.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh--CCeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL--HLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~ 109 (158)
+|++.|.+.+..| .....++.+....+ +|+++.+||.||...+ ..++...+.+.. ..+.++++|.++.+..
T Consensus 95 aivlVDss~~~~~-~a~~ii~f~~~~~~----ip~vVa~NK~DL~~a~--ppe~i~e~l~~~~~~~~vi~~~a~e~~~~~ 167 (187)
T COG2229 95 AIVLVDSSRPITF-HAEEIIDFLTSRNP----IPVVVAINKQDLFDAL--PPEKIREALKLELLSVPVIEIDATEGEGAR 167 (187)
T ss_pred EEEEEecCCCcch-HHHHHHHHHhhccC----CCEEEEeeccccCCCC--CHHHHHHHHHhccCCCceeeeecccchhHH
Confidence 8999999998888 55566666664433 8999999999997644 455655555543 7889999999999988
Q ss_pred HHHHHHHHH
Q psy2600 110 VNTRTPEIN 118 (158)
Q Consensus 110 ~lf~~l~~~ 118 (158)
+.++.+...
T Consensus 168 ~~L~~ll~~ 176 (187)
T COG2229 168 DQLDVLLLK 176 (187)
T ss_pred HHHHHHHhh
Confidence 888777654
No 217
>KOG0072|consensus
Probab=98.58 E-value=5.8e-07 Score=61.48 Aligned_cols=86 Identities=13% Similarity=-0.019 Sum_probs=56.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHh-hhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH-----HHHHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-----LAQSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-----~~~~~~~~~~~~Sa~~~ 105 (158)
+|+|.|.+|.+...-....+..+. +..-. +..+++++||.|.+.... ..++.. -.++.-+.+|++||..|
T Consensus 89 vIyVVDssd~dris~a~~el~~mL~E~eLq--~a~llv~anKqD~~~~~t--~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg 164 (182)
T KOG0072|consen 89 VIYVVDSSDRDRISIAGVELYSMLQEEELQ--HAKLLVFANKQDYSGALT--RSEVLKMLGLQKLKDRIWQIVKTSAVKG 164 (182)
T ss_pred EEEEEeccchhhhhhhHHHHHHHhccHhhc--CceEEEEeccccchhhhh--HHHHHHHhChHHHhhheeEEEeeccccc
Confidence 999999999876655543332222 21111 167899999999864322 112211 11222367899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.|+++.++++.+-+.+
T Consensus 165 ~Gld~~~DWL~~~l~~ 180 (182)
T KOG0072|consen 165 EGLDPAMDWLQRPLKS 180 (182)
T ss_pred cCCcHHHHHHHHHHhc
Confidence 9999999999988764
No 218
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.55 E-value=9.3e-07 Score=65.52 Aligned_cols=83 Identities=17% Similarity=0.123 Sum_probs=52.4
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh--------------
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL-------------- 93 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------------- 93 (158)
..+.+++|+|++.... .....++..+.... +|+++|.||+|+.+.... ......+.+.+
T Consensus 109 ~~D~~llVvda~~g~~-~~d~~~l~~l~~~~-----ip~ivvvNK~D~~~~~~~-~~~~~~l~~~L~~~g~~~~p~~~~~ 181 (224)
T cd04165 109 APDYAMLVVAANAGII-GMTKEHLGLALALN-----IPVFVVVTKIDLAPANIL-QETLKDLKRILKVPGVRKLPVPVKS 181 (224)
T ss_pred CCCEEEEEEECCCCCc-HHHHHHHHHHHHcC-----CCEEEEEECccccCHHHH-HHHHHHHHHHhcCCCccccceeeec
Confidence 3577999999875422 22334455555444 889999999998542221 11222222211
Q ss_pred ---------------CCeEEEEeCCCCCCHHHHHHHHHH
Q psy2600 94 ---------------HLHSFAVSARTGDNCWVNTRTPEI 117 (158)
Q Consensus 94 ---------------~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (158)
..++|.+||.+|.|++++...|..
T Consensus 182 ~~~~~~~~~~~~~~~~~pi~~vSavtg~Gi~~L~~~L~~ 220 (224)
T cd04165 182 DDDVVLAASNFSSERIVPIFQVSNVTGEGLDLLHAFLNL 220 (224)
T ss_pred ccceeehhhcCCccccCcEEEeeCCCccCHHHHHHHHHh
Confidence 137899999999999988877643
No 219
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=98.54 E-value=4.7e-07 Score=71.57 Aligned_cols=104 Identities=16% Similarity=0.151 Sum_probs=67.3
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH----HHHHhCC---eEEEEeC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK----LAQSLHL---HSFAVSA 102 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~---~~~~~Sa 102 (158)
+.+++|+|+.+.. ..|..++.+.... .|+++|+||+|+... ....+.... +++.+++ .++.+||
T Consensus 65 ~~Il~VvD~~d~~-----~s~~~~l~~~~~~---~piilV~NK~DLl~k-~~~~~~~~~~l~~~~k~~g~~~~~i~~vSA 135 (360)
T TIGR03597 65 ALIVYVVDIFDFE-----GSLIPELKRFVGG---NPVLLVGNKIDLLPK-SVNLSKIKEWMKKRAKELGLKPVDIILVSA 135 (360)
T ss_pred cEEEEEEECcCCC-----CCccHHHHHHhCC---CCEEEEEEchhhCCC-CCCHHHHHHHHHHHHHHcCCCcCcEEEecC
Confidence 5689999987643 2355666544322 899999999998642 222334333 3555665 4899999
Q ss_pred CCCCCHHHHHHHHHHHHHHhHhhcccccccccccccccccccccc
Q psy2600 103 RTGDNCWVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTFYMAVK 147 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (158)
+++.|++++|..+.+... .........++..+.++..++.
T Consensus 136 k~g~gv~eL~~~l~~~~~-----~~~v~~vG~~nvGKStliN~l~ 175 (360)
T TIGR03597 136 KKGNGIDELLDKIKKARN-----KKDVYVVGVTNVGKSSLINKLL 175 (360)
T ss_pred CCCCCHHHHHHHHHHHhC-----CCeEEEECCCCCCHHHHHHHHH
Confidence 999999999999865421 1233444555555555554443
No 220
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=98.53 E-value=6.4e-07 Score=72.30 Aligned_cols=81 Identities=14% Similarity=0.080 Sum_probs=50.7
Q ss_pred CCeEEEEEEECCChhHHhhH--HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc----ccHHHHHHHHHHhC-----Ce
Q psy2600 28 CGKIVIFMYDITSGQSFHSI--PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV----VTLERHAKLAQSLH-----LH 96 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~ 96 (158)
.+|.+++|+|+++.+++... ..++....... . .++++|+||+|+..... ....+...+++..+ ++
T Consensus 108 ~aD~~ilVvDa~~~~~~~~~~t~~~~~~~~~~~--~--~~iIVviNK~Dl~~~~~~~~~~~~~ei~~~~~~~g~~~~~~~ 183 (426)
T TIGR00483 108 QADAAVLVVAVGDGEFEVQPQTREHAFLARTLG--I--NQLIVAINKMDSVNYDEEEFEAIKKEVSNLIKKVGYNPDTVP 183 (426)
T ss_pred hCCEEEEEEECCCCCcccCCchHHHHHHHHHcC--C--CeEEEEEEChhccCccHHHHHHHHHHHHHHHHHcCCCcccce
Confidence 46789999999987543221 11122222222 1 67999999999863111 11234455566555 56
Q ss_pred EEEEeCCCCCCHHHHH
Q psy2600 97 SFAVSARTGDNCWVNT 112 (158)
Q Consensus 97 ~~~~Sa~~~~~i~~lf 112 (158)
++++||++|.||.+++
T Consensus 184 ~i~iSA~~g~ni~~~~ 199 (426)
T TIGR00483 184 FIPISAWNGDNVIKKS 199 (426)
T ss_pred EEEeeccccccccccc
Confidence 8999999999998744
No 221
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=98.49 E-value=8e-07 Score=74.40 Aligned_cols=89 Identities=16% Similarity=-0.020 Sum_probs=61.0
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc-cHHHHHHHHH-------HhCCeEEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV-TLERHAKLAQ-------SLHLHSFA 99 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~~~ 99 (158)
..|++++|+|+++. .+.+...|+..+.... +|+++|+||+|+...+.. ...+...+.. ...++++.
T Consensus 87 ~aD~alLVVDa~~G-~~~qT~~~l~~a~~~~-----ip~IVviNKiD~~~a~~~~v~~ei~~l~~~~g~~~e~l~~pvl~ 160 (594)
T TIGR01394 87 MVDGVLLLVDASEG-PMPQTRFVLKKALELG-----LKPIVVINKIDRPSARPDEVVDEVFDLFAELGADDEQLDFPIVY 160 (594)
T ss_pred hCCEEEEEEeCCCC-CcHHHHHHHHHHHHCC-----CCEEEEEECCCCCCcCHHHHHHHHHHHHHhhccccccccCcEEe
Confidence 44679999999763 3445566777776554 889999999998643210 0122222222 23467899
Q ss_pred EeCCCCC----------CHHHHHHHHHHHHHHh
Q psy2600 100 VSARTGD----------NCWVNTRTPEINPLKY 122 (158)
Q Consensus 100 ~Sa~~~~----------~i~~lf~~l~~~~~~~ 122 (158)
+||++|. |+..+|+.+++.++..
T Consensus 161 ~SA~~g~~~~~~~~~~~gi~~Lld~Iv~~lP~P 193 (594)
T TIGR01394 161 ASGRAGWASLDLDDPSDNMAPLFDAIVRHVPAP 193 (594)
T ss_pred chhhcCcccccCcccccCHHHHHHHHHHhCCCC
Confidence 9999995 7999999999887654
No 222
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.46 E-value=1e-06 Score=61.57 Aligned_cols=115 Identities=10% Similarity=0.031 Sum_probs=64.2
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
-.|.+++|.|+.++.... ...+...+.... .. +|+++|.||+|+.....+ ......+.+.+....+.+||+.+.|
T Consensus 8 ~aD~il~VvD~~~p~~~~-~~~i~~~l~~~~-~~--~p~ilVlNKiDl~~~~~~-~~~~~~~~~~~~~~~~~iSa~~~~~ 82 (157)
T cd01858 8 SSDVVIQVLDARDPMGTR-CKHVEEYLKKEK-PH--KHLIFVLNKCDLVPTWVT-ARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred hCCEEEEEEECCCCcccc-CHHHHHHHHhcc-CC--CCEEEEEEchhcCCHHHH-HHHHHHHhcCCcEEEEEeecccccc
Confidence 357799999998763221 122222232221 12 889999999998532211 1122222222223357799999999
Q ss_pred HHHHHHHHHHHHHHhHh-hcccccccccccccccccccccc
Q psy2600 108 CWVNTRTPEINPLKYLQ-SNNEYNFLSMVGFEAGTFYMAVK 147 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 147 (158)
++++++.+......... .....-....++..+.++...+.
T Consensus 83 ~~~L~~~l~~~~~~~~~~~~~~v~~~G~~nvGKStliN~l~ 123 (157)
T cd01858 83 KGSLIQLLRQFSKLHSDKKQISVGFIGYPNVGKSSIINTLR 123 (157)
T ss_pred HHHHHHHHHHHHhhhccccceEEEEEeCCCCChHHHHHHHh
Confidence 99999998765432111 11111244566666666655553
No 223
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=98.46 E-value=1.4e-06 Score=69.98 Aligned_cols=89 Identities=11% Similarity=-0.009 Sum_probs=56.4
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHHHHHHHHHh---CCeEEEEeCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLERHAKLAQSL---HLHSFAVSAR 103 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~~Sa~ 103 (158)
.|.+++|+|+++.....+....+..+..... .++++|+||+|+...... ..++...+.+.. +.+++++||+
T Consensus 104 aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi----~~iIVvvNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~vSA~ 179 (406)
T TIGR03680 104 MDGALLVIAANEPCPQPQTKEHLMALEIIGI----KNIVIVQNKIDLVSKEKALENYEEIKEFVKGTVAENAPIIPVSAL 179 (406)
T ss_pred CCEEEEEEECCCCccccchHHHHHHHHHcCC----CeEEEEEEccccCCHHHHHHHHHHHHhhhhhcccCCCeEEEEECC
Confidence 4789999999864311222222333332221 578999999998643221 112233333332 5679999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy2600 104 TGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 104 ~~~~i~~lf~~l~~~~~~ 121 (158)
+|.|++++++.|...+..
T Consensus 180 ~g~gi~~L~e~L~~~l~~ 197 (406)
T TIGR03680 180 HNANIDALLEAIEKFIPT 197 (406)
T ss_pred CCCChHHHHHHHHHhCCC
Confidence 999999999999987653
No 224
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.45 E-value=1.6e-06 Score=70.01 Aligned_cols=81 Identities=17% Similarity=0.083 Sum_probs=49.5
Q ss_pred CCeEEEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc----ccHHHHHHHHHHhC-----CeE
Q psy2600 28 CGKIVIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV----VTLERHAKLAQSLH-----LHS 97 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----~~~~~~~~~~~~~~-----~~~ 97 (158)
.+|.+++|+|+++..++... ..++..+..... .++++++||+|+..... ...++...+.+..+ .++
T Consensus 107 ~aD~~ilVvDa~~~~~~~~~~~~~~~~~~~~~~----~~iivviNK~Dl~~~~~~~~~~~~~~i~~~l~~~g~~~~~~~i 182 (425)
T PRK12317 107 QADAAVLVVAADDAGGVMPQTREHVFLARTLGI----NQLIVAINKMDAVNYDEKRYEEVKEEVSKLLKMVGYKPDDIPF 182 (425)
T ss_pred cCCEEEEEEEcccCCCCCcchHHHHHHHHHcCC----CeEEEEEEccccccccHHHHHHHHHHHHHHHHhhCCCcCcceE
Confidence 35789999999873222222 222333333221 47999999999864111 11223444555454 468
Q ss_pred EEEeCCCCCCHHHHH
Q psy2600 98 FAVSARTGDNCWVNT 112 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf 112 (158)
+.+||++|.|+.+++
T Consensus 183 i~iSA~~g~gi~~~~ 197 (425)
T PRK12317 183 IPVSAFEGDNVVKKS 197 (425)
T ss_pred EEeecccCCCccccc
Confidence 999999999998754
No 225
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.44 E-value=1.3e-06 Score=70.25 Aligned_cols=85 Identities=14% Similarity=0.036 Sum_probs=55.2
Q ss_pred CeEEEEEEECCCh----hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHHHHHHHHHh---CCeEEE
Q psy2600 29 GKIVIFMYDITSG----QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLERHAKLAQSL---HLHSFA 99 (158)
Q Consensus 29 gk~~i~v~d~~~~----~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~---~~~~~~ 99 (158)
.|.+++|+|+++. ++++.+ ..+..... .|+++|+||+|+...... ..++...+.+.. +.++++
T Consensus 109 ~D~~llVVDa~~~~~~~~t~~~l----~~l~~~~i----~~iiVVlNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~ii~ 180 (411)
T PRK04000 109 MDGAILVIAANEPCPQPQTKEHL----MALDIIGI----KNIVIVQNKIDLVSKERALENYEQIKEFVKGTVAENAPIIP 180 (411)
T ss_pred CCEEEEEEECCCCCCChhHHHHH----HHHHHcCC----CcEEEEEEeeccccchhHHHHHHHHHHHhccccCCCCeEEE
Confidence 4789999999854 233322 22222221 468999999998643221 112233333322 467999
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q psy2600 100 VSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 100 ~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+||+++.|++++++.|.+.+..
T Consensus 181 vSA~~g~gI~~L~~~L~~~l~~ 202 (411)
T PRK04000 181 VSALHKVNIDALIEAIEEEIPT 202 (411)
T ss_pred EECCCCcCHHHHHHHHHHhCCC
Confidence 9999999999999999887654
No 226
>KOG3905|consensus
Probab=98.40 E-value=5.9e-06 Score=63.80 Aligned_cols=60 Identities=15% Similarity=0.025 Sum_probs=46.2
Q ss_pred CcEEEEEEeCCCC----CCCccccHH-------HHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 63 PTYVALVANKGDM----EHQRVVTLE-------RHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 63 ~~piilv~nK~Dl----~~~~~~~~~-------~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
-+|+++|.+|||. ....+..++ ..+.|+-.+|...+.+|++...||+-+..+|+..+...
T Consensus 222 Gi~vlVV~TK~D~~s~leke~eyrDehfdfiq~~lRkFCLr~GaaLiyTSvKE~KNidllyKYivhr~yG~ 292 (473)
T KOG3905|consen 222 GIPVLVVCTKCDAVSVLEKEHEYRDEHFDFIQSHLRKFCLRYGAALIYTSVKETKNIDLLYKYIVHRSYGF 292 (473)
T ss_pred CCcEEEEEeccchhhHhhhcchhhHHHHHHHHHHHHHHHHHcCceeEEeecccccchHHHHHHHHHHhcCc
Confidence 4899999999997 322232222 24556677888999999999999999999999887654
No 227
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=98.40 E-value=2.3e-06 Score=71.94 Aligned_cols=84 Identities=10% Similarity=0.068 Sum_probs=54.2
Q ss_pred CCeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCcccc--HHHHHHHHHHhC---CeEE
Q psy2600 28 CGKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVT--LERHAKLAQSLH---LHSF 98 (158)
Q Consensus 28 vgk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~--~~~~~~~~~~~~---~~~~ 98 (158)
..|.+++|+|+++ +++.+.+ ..+.... +| +++|+||+|+.+..... .++...+....+ .+++
T Consensus 74 ~~D~~lLVVda~eg~~~qT~ehl----~il~~lg-----i~~iIVVlNKiDlv~~~~~~~v~~ei~~~l~~~~~~~~~ii 144 (614)
T PRK10512 74 GIDHALLVVACDDGVMAQTREHL----AILQLTG-----NPMLTVALTKADRVDEARIAEVRRQVKAVLREYGFAEAKLF 144 (614)
T ss_pred cCCEEEEEEECCCCCcHHHHHHH----HHHHHcC-----CCeEEEEEECCccCCHHHHHHHHHHHHHHHHhcCCCCCcEE
Confidence 3466999999876 3343332 2233222 44 68999999986422211 123333444333 5799
Q ss_pred EEeCCCCCCHHHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
.+||++|.|++++++.|.....
T Consensus 145 ~VSA~tG~gI~~L~~~L~~~~~ 166 (614)
T PRK10512 145 VTAATEGRGIDALREHLLQLPE 166 (614)
T ss_pred EEeCCCCCCCHHHHHHHHHhhc
Confidence 9999999999999999987543
No 228
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=98.40 E-value=4.1e-06 Score=56.08 Aligned_cols=98 Identities=15% Similarity=0.191 Sum_probs=67.4
Q ss_pred EEEEECCCCCCeE-----------------EEEE---EECCChhHHhhHHHHHHHHhhhcCC----------C-------
Q psy2600 19 KVVLLGDPSCGKI-----------------VIFM---YDITSGQSFHSIPTWVDLFHLNRKS----------S------- 61 (158)
Q Consensus 19 ki~~~G~~~vgk~-----------------~i~v---~d~~~~~s~~~~~~~~~~~~~~~~~----------~------- 61 (158)
|+.++|..++||+ ++=. ++++.+..|-+-+.|+..+.-...+ +
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~lykKTQAve~~d~~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~~s~f~ 82 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTLYKKTQAVEFNDKGDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDPESRFP 82 (148)
T ss_pred eeEEecccccCchhHHHHhhcchhhhcccceeeccCccccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCccccCC
Confidence 7899999999998 2211 2444555555556776655421110 0
Q ss_pred ------CCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 62 ------TPTYVALVANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 62 ------~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
...|.|-|.+|+||.+...+ +..+.|....| .++|++|+.++.||+++++.|...
T Consensus 83 p~f~~~~~k~vIgvVTK~DLaed~dI--~~~~~~L~eaGa~~IF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 83 PGFLDIGVKKVIGVVTKADLAEDADI--SLVKRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred cccccccccceEEEEecccccchHhH--HHHHHHHHHcCCcceEEEeccCcccHHHHHHHHHhh
Confidence 02458999999999864433 45666777777 459999999999999999988754
No 229
>KOG0074|consensus
Probab=98.33 E-value=1.2e-06 Score=59.86 Aligned_cols=84 Identities=20% Similarity=0.126 Sum_probs=56.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHh-hhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH----HHHHhCCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAK----LAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~~~~~~Sa~~~~ 106 (158)
+|||+|.+|...|+++..-+.++. ..+... +|+.+.+||.|+.....+. +.+.. ..+..-+++.++||..++
T Consensus 89 lIyVIDS~D~krfeE~~~el~ELleeeKl~~--vpvlIfankQdlltaa~~e-eia~klnl~~lrdRswhIq~csals~e 165 (185)
T KOG0074|consen 89 LIYVIDSTDEKRFEEISEELVELLEEEKLAE--VPVLIFANKQDLLTAAKVE-EIALKLNLAGLRDRSWHIQECSALSLE 165 (185)
T ss_pred EEEEEeCCchHhHHHHHHHHHHHhhhhhhhc--cceeehhhhhHHHhhcchH-HHHHhcchhhhhhceEEeeeCcccccc
Confidence 999999999999998865555544 333333 9999999999986433221 11211 112223567899999999
Q ss_pred CHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEIN 118 (158)
Q Consensus 107 ~i~~lf~~l~~~ 118 (158)
|+.+-.+++.+.
T Consensus 166 g~~dg~~wv~sn 177 (185)
T KOG0074|consen 166 GSTDGSDWVQSN 177 (185)
T ss_pred CccCcchhhhcC
Confidence 988877776543
No 230
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.31 E-value=4.3e-06 Score=64.44 Aligned_cols=84 Identities=14% Similarity=0.119 Sum_probs=57.4
Q ss_pred EEEEEECCChh--HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh-CCeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQ--SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL-HLHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 108 (158)
++|+||++... +.+.....+++++..-. .|+++|.||+|+.....+. +.......- +.....+++..+.++
T Consensus 251 IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~----~p~v~V~nK~D~~~~e~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 324 (346)
T COG1084 251 ILFLFDPSETCGYSLEEQISLLEEIKELFK----APIVVVINKIDIADEEKLE--EIEASVLEEGGEEPLKISATKGCGL 324 (346)
T ss_pred EEEEEcCccccCCCHHHHHHHHHHHHHhcC----CCeEEEEecccccchhHHH--HHHHHHHhhccccccceeeeehhhH
Confidence 99999998765 45555677888874432 7999999999986433332 333333333 344778888888888
Q ss_pred HHHHHHHHHHHHH
Q psy2600 109 WVNTRTPEINPLK 121 (158)
Q Consensus 109 ~~lf~~l~~~~~~ 121 (158)
+.+-..+.....+
T Consensus 325 d~~~~~v~~~a~~ 337 (346)
T COG1084 325 DKLREEVRKTALE 337 (346)
T ss_pred HHHHHHHHHHhhc
Confidence 8777777666444
No 231
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.30 E-value=2.3e-06 Score=58.74 Aligned_cols=72 Identities=17% Similarity=0.152 Sum_probs=47.1
Q ss_pred CCeEEEEEEECCChhHHhh--HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHS--IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTG 105 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (158)
-.|.+++|+|+.++.+..+ +..|+... . .+ +|+++|+||+|+..... ........+..+..++.+||.++
T Consensus 11 ~aD~vl~ViD~~~p~~~~~~~l~~~l~~~---~-~~--k~~iivlNK~DL~~~~~--~~~~~~~~~~~~~~ii~iSa~~~ 82 (141)
T cd01857 11 RSDIVVQIVDARNPLLFRPPDLERYVKEV---D-PR--KKNILLLNKADLLTEEQ--RKAWAEYFKKEGIVVVFFSALKE 82 (141)
T ss_pred hCCEEEEEEEccCCcccCCHHHHHHHHhc---c-CC--CcEEEEEechhcCCHHH--HHHHHHHHHhcCCeEEEEEecCC
Confidence 3577999999988765442 33444432 1 12 89999999999854222 12333445556778999999987
Q ss_pred CC
Q psy2600 106 DN 107 (158)
Q Consensus 106 ~~ 107 (158)
.+
T Consensus 83 ~~ 84 (141)
T cd01857 83 NA 84 (141)
T ss_pred Cc
Confidence 64
No 232
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=98.29 E-value=6.6e-06 Score=59.90 Aligned_cols=93 Identities=17% Similarity=0.083 Sum_probs=58.6
Q ss_pred EEEEEECCCC----------CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHH
Q psy2600 18 LKVVLLGDPS----------CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87 (158)
Q Consensus 18 ~ki~~~G~~~----------vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~ 87 (158)
+..++++..| ..+.+|.|+|+++..+... .+...+. .--++++||+|+........+...
T Consensus 92 ~D~iiIEt~G~~l~~~~~~~l~~~~i~vvD~~~~~~~~~--~~~~qi~--------~ad~~~~~k~d~~~~~~~~~~~~~ 161 (199)
T TIGR00101 92 LEMVFIESGGDNLSATFSPELADLTIFVIDVAAGDKIPR--KGGPGIT--------RSDLLVINKIDLAPMVGADLGVME 161 (199)
T ss_pred CCEEEEECCCCCcccccchhhhCcEEEEEEcchhhhhhh--hhHhHhh--------hccEEEEEhhhccccccccHHHHH
Confidence 4556666655 2355899999886544221 1112211 222899999998632111223334
Q ss_pred HHHHH--hCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 88 KLAQS--LHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 88 ~~~~~--~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
...+. .+.+++++||++|.|++++|+++.+.+.
T Consensus 162 ~~~~~~~~~~~i~~~Sa~~g~gi~el~~~i~~~~~ 196 (199)
T TIGR00101 162 RDAKKMRGEKPFIFTNLKTKEGLDTVIDWIEHYAL 196 (199)
T ss_pred HHHHHhCCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 44444 3578999999999999999999987653
No 233
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.29 E-value=8.7e-06 Score=65.61 Aligned_cols=87 Identities=14% Similarity=0.030 Sum_probs=62.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe---EEEEeCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH---SFAVSARTGD 106 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~~~ 106 (158)
.++++|.|++..---+.+.+.+..+.++ .-++.|.||+||+.... +....+...-.|++ .+.+||++|.
T Consensus 101 EGalLvVDAsQGveAQTlAN~YlAle~~------LeIiPViNKIDLP~Adp--ervk~eIe~~iGid~~dav~~SAKtG~ 172 (603)
T COG0481 101 EGALLVVDASQGVEAQTLANVYLALENN------LEIIPVLNKIDLPAADP--ERVKQEIEDIIGIDASDAVLVSAKTGI 172 (603)
T ss_pred CCcEEEEECccchHHHHHHHHHHHHHcC------cEEEEeeecccCCCCCH--HHHHHHHHHHhCCCcchheeEecccCC
Confidence 4499999998754444455555555432 78999999999986431 22333444446754 6899999999
Q ss_pred CHHHHHHHHHHHHHHhHh
Q psy2600 107 NCWVNTRTPEINPLKYLQ 124 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~~~ 124 (158)
||+++++.+++.++-...
T Consensus 173 gI~~iLe~Iv~~iP~P~g 190 (603)
T COG0481 173 GIEDVLEAIVEKIPPPKG 190 (603)
T ss_pred CHHHHHHHHHhhCCCCCC
Confidence 999999999999877653
No 234
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.29 E-value=1.1e-05 Score=58.53 Aligned_cols=74 Identities=15% Similarity=-0.027 Sum_probs=46.6
Q ss_pred HhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc-----------ccHHHHHH-HHHHh---C---CeEEEEeCC-
Q psy2600 44 FHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV-----------VTLERHAK-LAQSL---H---LHSFAVSAR- 103 (158)
Q Consensus 44 ~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-----------~~~~~~~~-~~~~~---~---~~~~~~Sa~- 103 (158)
|... ..|+..+.... .|+++|+||+|+..... ...++.++ +.... + .++|.+|+.
T Consensus 92 ~~~~d~~~~~~l~~~~-----~~~ilV~nK~D~~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~~~~~p~v~~vS~~~ 166 (197)
T cd04104 92 FSSNDVKLAKAIQCMG-----KKFYFVRTKVDRDLSNEQRSKPRSFNREQVLQEIRDNCLENLQEAGVSEPPVFLVSNFD 166 (197)
T ss_pred CCHHHHHHHHHHHHhC-----CCEEEEEecccchhhhhhccccccccHHHHHHHHHHHHHHHHHHcCCCCCCEEEEeCCC
Confidence 4444 35666666553 88999999999842100 00111111 11111 2 358999998
Q ss_pred -CCCCHHHHHHHHHHHHHHh
Q psy2600 104 -TGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 104 -~~~~i~~lf~~l~~~~~~~ 122 (158)
.+.++..+.+.+...+.+.
T Consensus 167 ~~~~~~~~l~~~~~~~l~~~ 186 (197)
T cd04104 167 PSDYDFPKLRETLLKDLPAH 186 (197)
T ss_pred hhhcChHHHHHHHHHHhhHH
Confidence 5789999999999988764
No 235
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.27 E-value=7.3e-06 Score=62.55 Aligned_cols=85 Identities=16% Similarity=0.135 Sum_probs=55.5
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
..|.+++|.|+.++.+... .++.++.. + .|+++|.||+|+...... .......+..+..++.+||+++.|
T Consensus 21 ~aDvVl~V~Dar~p~~~~~--~~i~~~l~----~--kp~IiVlNK~DL~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~g 90 (276)
T TIGR03596 21 LVDVVIEVLDARIPLSSRN--PMIDEIRG----N--KPRLIVLNKADLADPAVT--KQWLKYFEEKGIKALAINAKKGKG 90 (276)
T ss_pred hCCEEEEEEeCCCCCCCCC--hhHHHHHC----C--CCEEEEEEccccCCHHHH--HHHHHHHHHcCCeEEEEECCCccc
Confidence 3477999999976644332 12222221 1 789999999998532111 111122233456789999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2600 108 CWVNTRTPEINPLKY 122 (158)
Q Consensus 108 i~~lf~~l~~~~~~~ 122 (158)
++++.+.+.+.+.+.
T Consensus 91 i~~L~~~i~~~~~~~ 105 (276)
T TIGR03596 91 VKKIIKAAKKLLKEK 105 (276)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999998877654
No 236
>PRK13796 GTPase YqeH; Provisional
Probab=98.26 E-value=7.2e-06 Score=64.99 Aligned_cols=102 Identities=20% Similarity=0.192 Sum_probs=64.6
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH----HHHHhCC---eEEEEeCC
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK----LAQSLHL---HSFAVSAR 103 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~---~~~~~Sa~ 103 (158)
.+++|.|+.|.. ..|...+.+.... .|+++|+||+|+... ....+.... +++.+|+ .++.+||+
T Consensus 72 lIv~VVD~~D~~-----~s~~~~L~~~~~~---kpviLViNK~DLl~~-~~~~~~i~~~l~~~~k~~g~~~~~v~~vSAk 142 (365)
T PRK13796 72 LVVNVVDIFDFN-----GSWIPGLHRFVGN---NPVLLVGNKADLLPK-SVKKNKVKNWLRQEAKELGLRPVDVVLISAQ 142 (365)
T ss_pred EEEEEEECccCC-----CchhHHHHHHhCC---CCEEEEEEchhhCCC-ccCHHHHHHHHHHHHHhcCCCcCcEEEEECC
Confidence 578999987632 2355555543322 789999999999642 222233333 3455565 57999999
Q ss_pred CCCCHHHHHHHHHHHHHHhHhhccccccccccccccccccccc
Q psy2600 104 TGDNCWVNTRTPEINPLKYLQSNNEYNFLSMVGFEAGTFYMAV 146 (158)
Q Consensus 104 ~~~~i~~lf~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 146 (158)
++.|++++++.+.+... .........++..+.++..++
T Consensus 143 ~g~gI~eL~~~I~~~~~-----~~~v~vvG~~NvGKSTLiN~L 180 (365)
T PRK13796 143 KGHGIDELLEAIEKYRE-----GRDVYVVGVTNVGKSTLINRI 180 (365)
T ss_pred CCCCHHHHHHHHHHhcC-----CCeEEEEcCCCCcHHHHHHHH
Confidence 99999999999976421 123334455555555555444
No 237
>KOG0462|consensus
Probab=98.23 E-value=7e-06 Score=67.06 Aligned_cols=86 Identities=17% Similarity=0.081 Sum_probs=59.4
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-hC---CeEEEEeCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-LH---LHSFAVSAR 103 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~---~~~~~~Sa~ 103 (158)
..+++|+|.|++...--+...+++..+..+ .-+|.|.||+|++..+ .+........ ++ .+.+.+||+
T Consensus 148 ac~G~lLvVDA~qGvqAQT~anf~lAfe~~------L~iIpVlNKIDlp~ad---pe~V~~q~~~lF~~~~~~~i~vSAK 218 (650)
T KOG0462|consen 148 ACDGALLVVDASQGVQAQTVANFYLAFEAG------LAIIPVLNKIDLPSAD---PERVENQLFELFDIPPAEVIYVSAK 218 (650)
T ss_pred hcCceEEEEEcCcCchHHHHHHHHHHHHcC------CeEEEeeeccCCCCCC---HHHHHHHHHHHhcCCccceEEEEec
Confidence 556799999998643333333444444432 7789999999998643 2333333332 33 458999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy2600 104 TGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 104 ~~~~i~~lf~~l~~~~~~~ 122 (158)
+|.|++++++.+++.++-+
T Consensus 219 ~G~~v~~lL~AII~rVPpP 237 (650)
T KOG0462|consen 219 TGLNVEELLEAIIRRVPPP 237 (650)
T ss_pred cCccHHHHHHHHHhhCCCC
Confidence 9999999999999988654
No 238
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.21 E-value=1.8e-05 Score=64.43 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=56.2
Q ss_pred CCCeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHH-------HHHhC--
Q psy2600 27 SCGKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL-------AQSLH-- 94 (158)
Q Consensus 27 ~vgk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-------~~~~~-- 94 (158)
.+.|.++||.|++| +++.+.+ +-++..+ +|++++.||+|.+... +.....- ++.|+
T Consensus 77 ~vtDIaILVVa~dDGv~pQTiEAI----~hak~a~-----vP~iVAiNKiDk~~~n---p~~v~~el~~~gl~~E~~gg~ 144 (509)
T COG0532 77 SVTDIAILVVAADDGVMPQTIEAI----NHAKAAG-----VPIVVAINKIDKPEAN---PDKVKQELQEYGLVPEEWGGD 144 (509)
T ss_pred ccccEEEEEEEccCCcchhHHHHH----HHHHHCC-----CCEEEEEecccCCCCC---HHHHHHHHHHcCCCHhhcCCc
Confidence 36788999999988 4454432 2234333 9999999999987422 2222222 22333
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
..++.+||++|+|+.+|+..++-..-
T Consensus 145 v~~VpvSA~tg~Gi~eLL~~ill~ae 170 (509)
T COG0532 145 VIFVPVSAKTGEGIDELLELILLLAE 170 (509)
T ss_pred eEEEEeeccCCCCHHHHHHHHHHHHH
Confidence 45899999999999999998875443
No 239
>PRK10218 GTP-binding protein; Provisional
Probab=98.20 E-value=1.2e-05 Score=67.47 Aligned_cols=89 Identities=15% Similarity=-0.056 Sum_probs=55.5
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc-cHHHHHHHHH-------HhCCeEEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV-TLERHAKLAQ-------SLHLHSFA 99 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~-------~~~~~~~~ 99 (158)
..|++|+|+|+++.... ....++..+.... +|.++++||+|+...+.. ...+...+.. ...++++.
T Consensus 91 ~aDg~ILVVDa~~G~~~-qt~~~l~~a~~~g-----ip~IVviNKiD~~~a~~~~vl~ei~~l~~~l~~~~~~~~~PVi~ 164 (607)
T PRK10218 91 MVDSVLLVVDAFDGPMP-QTRFVTKKAFAYG-----LKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQLDFPIVY 164 (607)
T ss_pred hCCEEEEEEecccCccH-HHHHHHHHHHHcC-----CCEEEEEECcCCCCCchhHHHHHHHHHHhccCccccccCCCEEE
Confidence 34569999999874322 2333344444333 888999999998642210 0112222211 12467899
Q ss_pred EeCCCCC----------CHHHHHHHHHHHHHHh
Q psy2600 100 VSARTGD----------NCWVNTRTPEINPLKY 122 (158)
Q Consensus 100 ~Sa~~~~----------~i~~lf~~l~~~~~~~ 122 (158)
+||++|. ++..+++.+++.++..
T Consensus 165 ~SA~~G~~~~~~~~~~~~i~~Lld~Ii~~iP~P 197 (607)
T PRK10218 165 ASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred eEhhcCcccCCccccccchHHHHHHHHHhCCCC
Confidence 9999998 5888888888877654
No 240
>KOG1490|consensus
Probab=98.19 E-value=1.4e-05 Score=64.70 Aligned_cols=87 Identities=13% Similarity=0.044 Sum_probs=60.6
Q ss_pred EEEEEECCChh--HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHH---HHHHHHhCCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQ--SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH---AKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~---~~~~~~~~~~~~~~Sa~~~~ 106 (158)
++|+.|++... |.+.....+..++..=.+ .|+|+|.||||+-....++.+.. ..+...-++.++++|+.+.+
T Consensus 251 VLYfmDLSe~CGySva~QvkLfhsIKpLFaN---K~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS~~~ee 327 (620)
T KOG1490|consen 251 VLYFMDLSEMCGYSVAAQVKLYHSIKPLFAN---KVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTSCVQEE 327 (620)
T ss_pred heeeeechhhhCCCHHHHHHHHHHhHHHhcC---CceEEEeecccccCccccCHHHHHHHHHHHhccCceEEEecccchh
Confidence 89999998765 444445667777633222 89999999999865555544332 22333344889999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
||-++...+...+..
T Consensus 328 gVm~Vrt~ACe~LLa 342 (620)
T KOG1490|consen 328 GVMDVRTTACEALLA 342 (620)
T ss_pred ceeeHHHHHHHHHHH
Confidence 999888877765544
No 241
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=98.18 E-value=1.7e-05 Score=66.50 Aligned_cols=84 Identities=18% Similarity=0.105 Sum_probs=53.4
Q ss_pred CCeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc------------cHHHH------
Q psy2600 28 CGKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV------------TLERH------ 86 (158)
Q Consensus 28 vgk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------------~~~~~------ 86 (158)
.++.+++|+|+++ +++++.+.. +.... +|+++++||+|+...... .....
T Consensus 92 ~aD~~IlVvD~~~g~~~qt~e~i~~----l~~~~-----vpiIVv~NK~Dl~~~~~~~~~~~f~e~sak~~~~v~~~~~~ 162 (590)
T TIGR00491 92 LADLAILIVDINEGFKPQTQEALNI----LRMYK-----TPFVVAANKIDRIPGWRSHEGRPFMESFSKQEIQVQQNLDT 162 (590)
T ss_pred hCCEEEEEEECCcCCCHhHHHHHHH----HHHcC-----CCEEEEEECCCccchhhhccCchHHHHHHhhhHHHHHHHHH
Confidence 4678999999987 555554432 22222 899999999998531100 00000
Q ss_pred ------HHHHH------------Hh--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 87 ------AKLAQ------------SL--HLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 87 ------~~~~~------------~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
..+.+ .+ ..+++.+||++|+|+++|..++.....
T Consensus 163 ~~~~lv~~l~~~G~~~e~~~~i~~~~~~v~iVpVSA~tGeGideLl~~l~~l~~ 216 (590)
T TIGR00491 163 KVYNLVIKLHEEGFEAERFDRVTDFTKTVAIIPISAITGEGIPELLTMLAGLAQ 216 (590)
T ss_pred HHHHHHHHHHhcCccHHhhhhhhhcCCCceEEEeecCCCCChhHHHHHHHHHHH
Confidence 01111 12 257899999999999999998875543
No 242
>KOG0077|consensus
Probab=98.17 E-value=7.4e-06 Score=57.35 Aligned_cols=86 Identities=13% Similarity=0.049 Sum_probs=55.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH-HHHHh--------------CCe
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK-LAQSL--------------HLH 96 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~~~~--------------~~~ 96 (158)
+++.+|+-|.+.|.+.+..++.+..... .+.+|+++.+||+|.+......+..... +.+.- ...
T Consensus 91 iv~lvda~d~er~~es~~eld~ll~~e~-la~vp~lilgnKId~p~a~se~~l~~~l~l~~~t~~~~~v~~~~~~~rp~e 169 (193)
T KOG0077|consen 91 IVYLVDAYDQERFAESKKELDALLSDES-LATVPFLILGNKIDIPYAASEDELRFHLGLSNFTTGKGKVNLTDSNVRPLE 169 (193)
T ss_pred eEeeeehhhHHHhHHHHHHHHHHHhHHH-HhcCcceeecccccCCCcccHHHHHHHHHHHHHhcccccccccCCCCCeEE
Confidence 8999999999999988776666653221 0129999999999987543211111111 11100 124
Q ss_pred EEEEeCCCCCCHHHHHHHHHHH
Q psy2600 97 SFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 97 ~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
.|.||...+.+..+.|.++...
T Consensus 170 vfmcsi~~~~gy~e~fkwl~qy 191 (193)
T KOG0077|consen 170 VFMCSIVRKMGYGEGFKWLSQY 191 (193)
T ss_pred EEEEEEEccCccceeeeehhhh
Confidence 6889999988877877776543
No 243
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=98.16 E-value=1.7e-05 Score=60.94 Aligned_cols=85 Identities=15% Similarity=0.125 Sum_probs=56.1
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
..|.+|+|.|..++.+.+. .++.++.. . .|+++|.||+|+..... ......+.+..+..++.+||+++.|
T Consensus 24 ~aDvIL~VvDar~p~~~~~--~~l~~~~~-~-----kp~iiVlNK~DL~~~~~--~~~~~~~~~~~~~~vi~vSa~~~~g 93 (287)
T PRK09563 24 LVDVVIEVLDARIPLSSEN--PMIDKIIG-N-----KPRLLILNKSDLADPEV--TKKWIEYFEEQGIKALAINAKKGQG 93 (287)
T ss_pred hCCEEEEEEECCCCCCCCC--hhHHHHhC-C-----CCEEEEEEchhcCCHHH--HHHHHHHHHHcCCeEEEEECCCccc
Confidence 3477999999976544332 22333322 1 78999999999853211 1112222233456789999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2600 108 CWVNTRTPEINPLKY 122 (158)
Q Consensus 108 i~~lf~~l~~~~~~~ 122 (158)
+.++.+.+...+.+.
T Consensus 94 i~~L~~~l~~~l~~~ 108 (287)
T PRK09563 94 VKKILKAAKKLLKEK 108 (287)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999988877654
No 244
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=98.15 E-value=1.5e-05 Score=58.16 Aligned_cols=55 Identities=18% Similarity=0.099 Sum_probs=40.3
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLH--LHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
.+.++++||+|+...............+..+ .+++++||+++.|++++|+++.+.
T Consensus 149 ~a~iiv~NK~Dl~~~~~~~~~~~~~~l~~~~~~~~i~~~Sa~~g~gv~~l~~~i~~~ 205 (207)
T TIGR00073 149 EADLIVINKADLAEAVGFDVEKMKADAKKINPEAEIILMSLKTGEGLDEWLEFLEGQ 205 (207)
T ss_pred hCCEEEEEHHHccccchhhHHHHHHHHHHhCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 6789999999996432222233444444433 789999999999999999999875
No 245
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.15 E-value=1.8e-05 Score=56.09 Aligned_cols=83 Identities=16% Similarity=0.080 Sum_probs=53.2
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
-.|.+++|+|++++...... .+...+ .. .|.++|.||+|+.....+ ....++.+..+..++.+||+++.|
T Consensus 19 ~aD~il~v~D~~~~~~~~~~-~i~~~~----~~---k~~ilVlNK~Dl~~~~~~--~~~~~~~~~~~~~vi~iSa~~~~g 88 (171)
T cd01856 19 LVDLVIEVRDARIPLSSRNP-LLEKIL----GN---KPRIIVLNKADLADPKKT--KKWLKYFESKGEKVLFVNAKSGKG 88 (171)
T ss_pred hCCEEEEEeeccCccCcCCh-hhHhHh----cC---CCEEEEEehhhcCChHHH--HHHHHHHHhcCCeEEEEECCCccc
Confidence 34678999999765432221 122222 11 788999999998532111 111122233345689999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINPL 120 (158)
Q Consensus 108 i~~lf~~l~~~~~ 120 (158)
++++...+...+.
T Consensus 89 i~~L~~~l~~~l~ 101 (171)
T cd01856 89 VKKLLKAAKKLLK 101 (171)
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 246
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.13 E-value=3.8e-05 Score=57.39 Aligned_cols=42 Identities=14% Similarity=0.017 Sum_probs=29.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
.+++++|+|.++.... ....|+..+.... +|+++++||+|+.
T Consensus 88 aD~~IlVvd~~~g~~~-~~~~~~~~~~~~~-----~P~iivvNK~D~~ 129 (237)
T cd04168 88 LDGAILVISAVEGVQA-QTRILWRLLRKLN-----IPTIIFVNKIDRA 129 (237)
T ss_pred hCeEEEEEeCCCCCCH-HHHHHHHHHHHcC-----CCEEEEEECcccc
Confidence 3569999999875433 3345555555443 8999999999985
No 247
>PRK01889 GTPase RsgA; Reviewed
Probab=98.11 E-value=1.9e-05 Score=62.38 Aligned_cols=79 Identities=18% Similarity=0.170 Sum_probs=53.8
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-HhCCeEEEEeCCCCCCH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-SLHLHSFAVSARTGDNC 108 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~~i 108 (158)
|.+++|++++..-+...+..++..+...+ ++.++|.||+||.... .+....+.. ..+.+++.+|++++.|+
T Consensus 114 D~vliV~s~~p~~~~~~ldr~L~~a~~~~-----i~piIVLNK~DL~~~~---~~~~~~~~~~~~g~~Vi~vSa~~g~gl 185 (356)
T PRK01889 114 DTVFIVCSLNHDFNLRRIERYLALAWESG-----AEPVIVLTKADLCEDA---EEKIAEVEALAPGVPVLAVSALDGEGL 185 (356)
T ss_pred CEEEEEEecCCCCChhHHHHHHHHHHHcC-----CCEEEEEEChhcCCCH---HHHHHHHHHhCCCCcEEEEECCCCccH
Confidence 56889999864334444566666666544 6778899999996431 112222222 34678899999999999
Q ss_pred HHHHHHHH
Q psy2600 109 WVNTRTPE 116 (158)
Q Consensus 109 ~~lf~~l~ 116 (158)
++|...+.
T Consensus 186 ~~L~~~L~ 193 (356)
T PRK01889 186 DVLAAWLS 193 (356)
T ss_pred HHHHHHhh
Confidence 99888764
No 248
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.10 E-value=1.3e-05 Score=58.44 Aligned_cols=46 Identities=17% Similarity=0.241 Sum_probs=34.1
Q ss_pred eEEEEEEECCCh-hHHhhHHHHHHHHhhh---cCCCCCcEEEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSG-QSFHSIPTWVDLFHLN---RKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 30 k~~i~v~d~~~~-~s~~~~~~~~~~~~~~---~~~~~~~piilv~nK~Dl~~ 77 (158)
+++|||+|+++. .++.....|+..+... .... +|+++++||+|+..
T Consensus 74 ~~vV~VvD~~~~~~~~~~~~~~l~~il~~~~~~~~~--~pvliv~NK~Dl~~ 123 (203)
T cd04105 74 KGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNK--IPVLIACNKQDLFT 123 (203)
T ss_pred CEEEEEEECccchhHHHHHHHHHHHHHHHHhhccCC--CCEEEEecchhhcc
Confidence 779999999987 6777776666555421 1122 99999999999864
No 249
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.10 E-value=6.3e-05 Score=54.57 Aligned_cols=74 Identities=15% Similarity=0.004 Sum_probs=44.6
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCcccc---HHHHHHHHHHhC-----CeEEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVT---LERHAKLAQSLH-----LHSFA 99 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~ 99 (158)
.|.+++|+|++..-. ......+..+.... +| +|++.||+|+....... ..+...+....+ .+++.
T Consensus 89 ~D~~ilVvda~~g~~-~~~~~~~~~~~~~~-----~~~iIvviNK~D~~~~~~~~~~~~~~i~~~l~~~g~~~~~v~iip 162 (195)
T cd01884 89 MDGAILVVSATDGPM-PQTREHLLLARQVG-----VPYIVVFLNKADMVDDEELLELVEMEVRELLSKYGFDGDNTPIVR 162 (195)
T ss_pred CCEEEEEEECCCCCc-HHHHHHHHHHHHcC-----CCcEEEEEeCCCCCCcHHHHHHHHHHHHHHHHHhcccccCCeEEE
Confidence 466999999876322 12233444444433 55 78999999985322211 122333444433 56999
Q ss_pred EeCCCCCCH
Q psy2600 100 VSARTGDNC 108 (158)
Q Consensus 100 ~Sa~~~~~i 108 (158)
+||.+|.|+
T Consensus 163 iSa~~g~n~ 171 (195)
T cd01884 163 GSALKALEG 171 (195)
T ss_pred eeCccccCC
Confidence 999999985
No 250
>PRK09866 hypothetical protein; Provisional
Probab=98.08 E-value=5.2e-05 Score=63.66 Aligned_cols=85 Identities=16% Similarity=0.060 Sum_probs=54.2
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh----C---CeEEEEeC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL----H---LHSFAVSA 102 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~----~---~~~~~~Sa 102 (158)
|.++||.|.+..-+..+ ....+.+++.... .|+++|.||+|+.....-..+....+.+.. + ..+|.+||
T Consensus 260 DvVLFVVDat~~~s~~D-eeIlk~Lkk~~K~---~PVILVVNKIDl~dreeddkE~Lle~V~~~L~q~~i~f~eIfPVSA 335 (741)
T PRK09866 260 SAVLAVLDYTQLKSISD-EEVREAILAVGQS---VPLYVLVNKFDQQDRNSDDADQVRALISGTLMKGCITPQQIFPVSS 335 (741)
T ss_pred CEEEEEEeCCCCCChhH-HHHHHHHHhcCCC---CCEEEEEEcccCCCcccchHHHHHHHHHHHHHhcCCCCceEEEEeC
Confidence 44999999887433333 2234444433211 599999999998532221233444443321 2 35899999
Q ss_pred CCCCCHHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEIN 118 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~ 118 (158)
++|.|++++++.+.+.
T Consensus 336 lkG~nid~LLdeI~~~ 351 (741)
T PRK09866 336 MWGYLANRARHELANN 351 (741)
T ss_pred CCCCCHHHHHHHHHhC
Confidence 9999999999998873
No 251
>KOG1191|consensus
Probab=98.06 E-value=1.2e-05 Score=64.97 Aligned_cols=92 Identities=15% Similarity=0.104 Sum_probs=52.9
Q ss_pred EEEEEEC--CChhHHhhHHHHHHHHhhhc----CCCCCcEEEEEEeCCCCCCC-ccccHHHHHHHHHHhC---Ce-EEEE
Q psy2600 32 VIFMYDI--TSGQSFHSIPTWVDLFHLNR----KSSTPTYVALVANKGDMEHQ-RVVTLERHAKLAQSLH---LH-SFAV 100 (158)
Q Consensus 32 ~i~v~d~--~~~~s~~~~~~~~~~~~~~~----~~~~~~piilv~nK~Dl~~~-~~~~~~~~~~~~~~~~---~~-~~~~ 100 (158)
+++|+|+ ++..+-..+...++...... ......+++++.||.|+... .+... ....+....+ .+ ..++
T Consensus 352 i~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~-~~~~~~~~~~~~~~~i~~~v 430 (531)
T KOG1191|consen 352 ILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTK-IPVVYPSAEGRSVFPIVVEV 430 (531)
T ss_pred EEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCccccccC-CceeccccccCcccceEEEe
Confidence 8899998 44333333334444333111 00012689999999998643 12111 1111112122 22 4569
Q ss_pred eCCCCCCHHHHHHHHHHHHHHhHh
Q psy2600 101 SARTGDNCWVNTRTPEINPLKYLQ 124 (158)
Q Consensus 101 Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (158)
||++++++++|.+.+.+.+.....
T Consensus 431 s~~tkeg~~~L~~all~~~~~~~~ 454 (531)
T KOG1191|consen 431 SCTTKEGCERLSTALLNIVERLVV 454 (531)
T ss_pred eechhhhHHHHHHHHHHHHHHhhc
Confidence 999999999999999988766544
No 252
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.04 E-value=2.7e-05 Score=57.96 Aligned_cols=86 Identities=12% Similarity=0.135 Sum_probs=50.5
Q ss_pred EEEEEECCChhHHhh---HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc---cc---HHHHHHHHHHhC---CeEEE
Q psy2600 32 VIFMYDITSGQSFHS---IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV---VT---LERHAKLAQSLH---LHSFA 99 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~---~~~~~~~~~~~~---~~~~~ 99 (158)
+|||+|+...+-.++ +...+..+.++++. ..+-+...|.|+..... +- .+.........+ +.++.
T Consensus 80 LIyV~D~qs~~~~~~l~~~~~~i~~l~~~sp~---~~v~vfiHK~D~l~~~~r~~~~~~~~~~i~~~~~~~~~~~~~~~~ 156 (232)
T PF04670_consen 80 LIYVFDAQSDDYDEDLAYLSDCIEALRQYSPN---IKVFVFIHKMDLLSEDEREEIFRDIQQRIRDELEDLGIEDITFFL 156 (232)
T ss_dssp EEEEEETT-STCHHHHHHHHHHHHHHHHHSTT----EEEEEEE-CCCS-HHHHHHHHHHHHHHHHHHHHHTT-TSEEEEE
T ss_pred EEEEEEcccccHHHHHHHHHHHHHHHHHhCCC---CeEEEEEeecccCCHHHHHHHHHHHHHHHHHHhhhccccceEEEe
Confidence 999999984443333 34455555566654 88999999999853111 10 111222333445 66788
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q psy2600 100 VSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 100 ~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
||..+ ..+-+.|..++..+.-
T Consensus 157 TSI~D-~Sly~A~S~Ivq~LiP 177 (232)
T PF04670_consen 157 TSIWD-ESLYEAWSKIVQKLIP 177 (232)
T ss_dssp E-TTS-THHHHHHHHHHHTTST
T ss_pred ccCcC-cHHHHHHHHHHHHHcc
Confidence 87765 6888888888876653
No 253
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.02 E-value=2.5e-05 Score=57.20 Aligned_cols=43 Identities=21% Similarity=0.199 Sum_probs=30.0
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
.++++++|+|.++..++.. ..|+..+.... +|+++|+||+|+.
T Consensus 94 ~aD~~llVvD~~~~~~~~~-~~~~~~~~~~~-----~p~iiviNK~D~~ 136 (213)
T cd04167 94 LSDGVVLVVDVVEGVTSNT-ERLIRHAILEG-----LPIVLVINKIDRL 136 (213)
T ss_pred hCCEEEEEEECCCCCCHHH-HHHHHHHHHcC-----CCEEEEEECcccC
Confidence 4467999999987655532 34444444322 8999999999974
No 254
>KOG1707|consensus
Probab=98.02 E-value=3.3e-05 Score=63.51 Aligned_cols=86 Identities=14% Similarity=0.082 Sum_probs=64.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe-EEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH-SFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~i~~ 110 (158)
+.++||.+++.+|+.....++...... . .|++.|+.|+|+....+.......+++.+++++ ...+|+++... .+
T Consensus 499 ~~~~YDsS~p~sf~~~a~v~~~~~~~~--~--~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~~~~~s-~~ 573 (625)
T KOG1707|consen 499 ACLVYDSSNPRSFEYLAEVYNKYFDLY--K--IPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISSKTLSS-NE 573 (625)
T ss_pred EEEecccCCchHHHHHHHHHHHhhhcc--C--CceEEEeeccccchhhhccCCChHHHHHhcCCCCCeeeccCCCCC-ch
Confidence 899999999999998776666555331 1 999999999999754432233347889999965 67778886444 78
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|..|+......
T Consensus 574 lf~kL~~~A~~P 585 (625)
T KOG1707|consen 574 LFIKLATMAQYP 585 (625)
T ss_pred HHHHHHHhhhCC
Confidence 999998877554
No 255
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.01 E-value=1.8e-05 Score=58.30 Aligned_cols=77 Identities=16% Similarity=0.142 Sum_probs=44.5
Q ss_pred CCeEEEEEEECCChhH---H----hhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc--cccHH----HHHHHHHHhC
Q psy2600 28 CGKIVIFMYDITSGQS---F----HSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR--VVTLE----RHAKLAQSLH 94 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s---~----~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~----~~~~~~~~~~ 94 (158)
.++++|+|+|+++... | +....| ....... . .|+++++||+|+.... ....+ +...+.+..+
T Consensus 100 ~~d~~i~VvDa~~~~~~~~~~~~~~~~~~~-~~~~~~~--~--~~iiivvNK~Dl~~~~~~~~~~~~i~~~l~~~l~~~~ 174 (219)
T cd01883 100 QADVAVLVVDARKGEFEAGFEKGGQTREHA-LLARTLG--V--KQLIVAVNKMDDVTVNWSEERYDEIKKELSPFLKKVG 174 (219)
T ss_pred hCCEEEEEEECCCCccccccccccchHHHH-HHHHHcC--C--CeEEEEEEccccccccccHHHHHHHHHHHHHHHHHcC
Confidence 4688999999987421 1 112222 2222222 1 6899999999986311 00011 1222233333
Q ss_pred -----CeEEEEeCCCCCCHH
Q psy2600 95 -----LHSFAVSARTGDNCW 109 (158)
Q Consensus 95 -----~~~~~~Sa~~~~~i~ 109 (158)
.+++.+||++|.||.
T Consensus 175 ~~~~~~~ii~iSA~tg~gi~ 194 (219)
T cd01883 175 YNPKDVPFIPISGLTGDNLI 194 (219)
T ss_pred CCcCCceEEEeecCcCCCCC
Confidence 569999999999976
No 256
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.00 E-value=4e-05 Score=56.01 Aligned_cols=78 Identities=19% Similarity=0.188 Sum_probs=45.6
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc----cHHHHHHHHHHhC---CeEEEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV----TLERHAKLAQSLH---LHSFAV 100 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~----~~~~~~~~~~~~~---~~~~~~ 100 (158)
.++.+|+|+|+++... .....+...+..... .++++|+||+|+...... ...+...+.+.++ .+++.+
T Consensus 100 ~ad~~llVvD~~~~~~-~~~~~~~~~~~~~~~----~~iIvviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ii~i 174 (208)
T cd04166 100 TADLAILLVDARKGVL-EQTRRHSYILSLLGI----RHVVVAVNKMDLVDYSEEVFEEIVADYLAFAAKLGIEDITFIPI 174 (208)
T ss_pred hCCEEEEEEECCCCcc-HhHHHHHHHHHHcCC----CcEEEEEEchhcccCCHHHHHHHHHHHHHHHHHcCCCCceEEEE
Confidence 4467999999986421 112222222222221 457889999998642110 1123334445555 348999
Q ss_pred eCCCCCCHHH
Q psy2600 101 SARTGDNCWV 110 (158)
Q Consensus 101 Sa~~~~~i~~ 110 (158)
||++|.|+.+
T Consensus 175 SA~~g~ni~~ 184 (208)
T cd04166 175 SALDGDNVVS 184 (208)
T ss_pred eCCCCCCCcc
Confidence 9999999874
No 257
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.98 E-value=0.00011 Score=56.74 Aligned_cols=51 Identities=25% Similarity=0.061 Sum_probs=41.5
Q ss_pred CcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 63 PTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 63 ~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
.+|.++|.||+|+.. .+....+.+.. .++.+||..+.|+++|.+.+.+.+.
T Consensus 239 Y~p~l~v~NKiD~~~-----~e~~~~l~~~~--~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 239 YKPALYVVNKIDLPG-----LEELERLARKP--NSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred eeeeEEEEecccccC-----HHHHHHHHhcc--ceEEEecccCCCHHHHHHHHHHhhC
Confidence 489999999999864 34555555554 6899999999999999999998764
No 258
>PRK14845 translation initiation factor IF-2; Provisional
Probab=97.95 E-value=0.00014 Score=64.44 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=53.4
Q ss_pred CCeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccH------------HH-HHH---
Q psy2600 28 CGKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTL------------ER-HAK--- 88 (158)
Q Consensus 28 vgk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~------------~~-~~~--- 88 (158)
.++.+++|+|+++ +++++.+. .+...+ +|+++|+||+|+........ +. ..+
T Consensus 549 ~aDivlLVVDa~~Gi~~qT~e~I~----~lk~~~-----iPiIVViNKiDL~~~~~~~~~~~~~~~~~~q~~~~~~el~~ 619 (1049)
T PRK14845 549 LADLAVLVVDINEGFKPQTIEAIN----ILRQYK-----TPFVVAANKIDLIPGWNISEDEPFLLNFNEQDQHALTELEI 619 (1049)
T ss_pred cCCEEEEEEECcccCCHhHHHHHH----HHHHcC-----CCEEEEEECCCCccccccccchhhhhhhhhhHHHHHHHHHH
Confidence 3578999999986 45555433 233332 89999999999853211100 00 000
Q ss_pred --------HH------------HHh--CCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 89 --------LA------------QSL--HLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 89 --------~~------------~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
++ +++ ..+++.+||++|.||.+|...+.....
T Consensus 620 ~l~~v~~~L~~~G~~~e~~~~~~d~~~~v~iVpVSA~tGeGId~Ll~~l~~l~~ 673 (1049)
T PRK14845 620 KLYELIGKLYELGFDADRFDRVQDFTRTVAIVPVSAKTGEGIPELLMMVAGLAQ 673 (1049)
T ss_pred HHHHHhhHHHhcCcchhhhhhhhhcCCCceEEEEEcCCCCCHHHHHHHHHHhhH
Confidence 11 112 257899999999999999988875543
No 259
>PRK12735 elongation factor Tu; Reviewed
Probab=97.94 E-value=8.9e-05 Score=59.42 Aligned_cols=85 Identities=12% Similarity=-0.049 Sum_probs=51.2
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEE-EEEEeCCCCCCCcccc---HHHHHHHHHHhC-----CeEEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV-ALVANKGDMEHQRVVT---LERHAKLAQSLH-----LHSFAV 100 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~~ 100 (158)
|.+++|+|+++... .+...++..+.... +|. +++.||+|+....... ..+...+.+.++ .+++.+
T Consensus 100 D~~llVvda~~g~~-~qt~e~l~~~~~~g-----i~~iivvvNK~Dl~~~~~~~~~~~~ei~~~l~~~~~~~~~~~ii~~ 173 (396)
T PRK12735 100 DGAILVVSAADGPM-PQTREHILLARQVG-----VPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPIIRG 173 (396)
T ss_pred CEEEEEEECCCCCc-hhHHHHHHHHHHcC-----CCeEEEEEEecCCcchHHHHHHHHHHHHHHHHHcCCCcCceeEEec
Confidence 45899999876322 22223344444333 674 4689999986322111 123444455443 568999
Q ss_pred eCCCCC----------CHHHHHHHHHHHHH
Q psy2600 101 SARTGD----------NCWVNTRTPEINPL 120 (158)
Q Consensus 101 Sa~~~~----------~i~~lf~~l~~~~~ 120 (158)
||.++. ++.+|++.+.+.+.
T Consensus 174 Sa~~g~n~~~~~~w~~~~~~Ll~~l~~~~~ 203 (396)
T PRK12735 174 SALKALEGDDDEEWEAKILELMDAVDSYIP 203 (396)
T ss_pred chhccccCCCCCcccccHHHHHHHHHhcCC
Confidence 999984 56777777776653
No 260
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=97.94 E-value=8.5e-05 Score=59.48 Aligned_cols=71 Identities=15% Similarity=0.025 Sum_probs=42.1
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCcccc---HHHHHHHHHHhC-----CeEEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVT---LERHAKLAQSLH-----LHSFAV 100 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~~ 100 (158)
|.+++|+|+++....+ ....+..+.... +| ++++.||+|+....... ..+...+.+.++ ++++.+
T Consensus 100 D~~ilVvda~~g~~~q-t~e~l~~~~~~g-----i~~iIvvvNK~Dl~~~~~~~~~~~~~i~~~l~~~~~~~~~~~ii~v 173 (394)
T TIGR00485 100 DGAILVVSATDGPMPQ-TREHILLARQVG-----VPYIVVFLNKCDMVDDEELLELVEMEVRELLSEYDFPGDDTPIIRG 173 (394)
T ss_pred CEEEEEEECCCCCcHH-HHHHHHHHHHcC-----CCEEEEEEEecccCCHHHHHHHHHHHHHHHHHhcCCCccCccEEEC
Confidence 5589999998632211 122333344333 55 55789999986432211 123455555554 679999
Q ss_pred eCCCCC
Q psy2600 101 SARTGD 106 (158)
Q Consensus 101 Sa~~~~ 106 (158)
||.++.
T Consensus 174 Sa~~g~ 179 (394)
T TIGR00485 174 SALKAL 179 (394)
T ss_pred cccccc
Confidence 999875
No 261
>KOG0705|consensus
Probab=97.94 E-value=4.5e-05 Score=62.51 Aligned_cols=90 Identities=18% Similarity=0.272 Sum_probs=69.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC--CCccccHHHHHHHHHHhC-CeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME--HQRVVTLERHAKLAQSLH-LHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i 108 (158)
+||||.+.+..+|+.+..+...+..+... .++|+++++++--.. ..+.+.+..++.+..++. +.||++++.+|.++
T Consensus 99 vIfvf~~~d~~s~q~v~~l~~~l~~~r~r-~~i~l~lvgtqd~iS~~~~rv~~da~~r~l~~~~krcsy~et~atyGlnv 177 (749)
T KOG0705|consen 99 VVFVFSVEDEQSFQAVQALAHEMSSYRNI-SDLPLILVGTQDHISAKRPRVITDDRARQLSAQMKRCSYYETCATYGLNV 177 (749)
T ss_pred eEEEEEeccccCHHHHHHHHhhccccccc-ccchHHhhcCcchhhcccccccchHHHHHHHHhcCccceeecchhhhhhH
Confidence 89999999999999988777766633322 138999999987654 355566667777666654 77999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2600 109 WVNTRTPEINPLKY 122 (158)
Q Consensus 109 ~~lf~~l~~~~~~~ 122 (158)
+..|+.+...+...
T Consensus 178 ~rvf~~~~~k~i~~ 191 (749)
T KOG0705|consen 178 ERVFQEVAQKIVQL 191 (749)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999998776654
No 262
>PRK13351 elongation factor G; Reviewed
Probab=97.92 E-value=0.00018 Score=61.56 Aligned_cols=28 Identities=11% Similarity=-0.352 Sum_probs=24.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
++|..||++|.||..|++.++..++...
T Consensus 254 PV~~gSA~~~~Gv~~LLd~I~~~lPsP~ 281 (687)
T PRK13351 254 PVLFGSALKNIGIEPLLDAVVDYLPSPL 281 (687)
T ss_pred EEEecccCcCccHHHHHHHHHHHCCChh
Confidence 4778899999999999999999887654
No 263
>PRK12736 elongation factor Tu; Reviewed
Probab=97.91 E-value=0.00015 Score=58.14 Aligned_cols=86 Identities=12% Similarity=-0.046 Sum_probs=51.8
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCcccc---HHHHHHHHHHhC-----CeEEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVT---LERHAKLAQSLH-----LHSFA 99 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~ 99 (158)
.|.+++|+|+++... .....++..+.... +| +|++.||+|+....... ..+...+.+..+ .+++.
T Consensus 99 ~d~~llVvd~~~g~~-~~t~~~~~~~~~~g-----~~~~IvviNK~D~~~~~~~~~~i~~~i~~~l~~~~~~~~~~~ii~ 172 (394)
T PRK12736 99 MDGAILVVAATDGPM-PQTREHILLARQVG-----VPYLVVFLNKVDLVDDEELLELVEMEVRELLSEYDFPGDDIPVIR 172 (394)
T ss_pred CCEEEEEEECCCCCc-hhHHHHHHHHHHcC-----CCEEEEEEEecCCcchHHHHHHHHHHHHHHHHHhCCCcCCccEEE
Confidence 356999999876321 12223333344333 66 78899999986322221 123334444444 47899
Q ss_pred EeCCCCC--------CHHHHHHHHHHHHH
Q psy2600 100 VSARTGD--------NCWVNTRTPEINPL 120 (158)
Q Consensus 100 ~Sa~~~~--------~i~~lf~~l~~~~~ 120 (158)
+||++|. ++.++++.+.+.+.
T Consensus 173 vSa~~g~~~~~~~~~~i~~Ll~~l~~~lp 201 (394)
T PRK12736 173 GSALKALEGDPKWEDAIMELMDAVDEYIP 201 (394)
T ss_pred eeccccccCCCcchhhHHHHHHHHHHhCC
Confidence 9999983 56777777776654
No 264
>PRK13768 GTPase; Provisional
Probab=97.91 E-value=8.8e-05 Score=55.97 Aligned_cols=87 Identities=20% Similarity=0.114 Sum_probs=54.7
Q ss_pred CeEEEEEEECCChhHHhhH--HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH------------------
Q psy2600 29 GKIVIFMYDITSGQSFHSI--PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK------------------ 88 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~--~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~------------------ 88 (158)
.+.+++++|.+......+. ..|+......... +|+++|+||+|+...... +....
T Consensus 129 ~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~---~~~i~v~nK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~ 203 (253)
T PRK13768 129 KSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLG---LPQIPVLNKADLLSEEEL--ERILKWLEDPEYLLEELKLEKGL 203 (253)
T ss_pred CeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcC---CCEEEEEEhHhhcCchhH--HHHHHHHhCHHHHHHHHhcccch
Confidence 4679999998654333222 1233322222222 899999999998643221 11111
Q ss_pred ----------HHHHhC--CeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 89 ----------LAQSLH--LHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 89 ----------~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
..++.+ ..++.+|+.++.|++++.+.+.+.+.
T Consensus 204 ~~~~~~~~~~~i~~~~~~~~vi~iSa~~~~gl~~L~~~I~~~l~ 247 (253)
T PRK13768 204 QGLLSLELLRALEETGLPVRVIPVSAKTGEGFDELYAAIQEVFC 247 (253)
T ss_pred HHHHHHHHHHHHHHHCCCCcEEEEECCCCcCHHHHHHHHHHHcC
Confidence 122334 47899999999999999999988764
No 265
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=97.90 E-value=0.00011 Score=59.94 Aligned_cols=90 Identities=9% Similarity=0.000 Sum_probs=54.6
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc--HHHHHHHHHH---hCCeEEEEeC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT--LERHAKLAQS---LHLHSFAVSA 102 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~---~~~~~~~~Sa 102 (158)
..|.+++|.|+++...-.+....+..+....- .++++|.||+|+....... .++...+.+. .+.+++.+||
T Consensus 140 ~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi----~~iIVvlNKiDlv~~~~~~~~~~ei~~~l~~~~~~~~~iipVSA 215 (460)
T PTZ00327 140 VMDAALLLIAANESCPQPQTSEHLAAVEIMKL----KHIIILQNKIDLVKEAQAQDQYEEIRNFVKGTIADNAPIIPISA 215 (460)
T ss_pred hCCEEEEEEECCCCccchhhHHHHHHHHHcCC----CcEEEEEecccccCHHHHHHHHHHHHHHHHhhccCCCeEEEeeC
Confidence 34779999999863111111222222332221 5689999999986422211 1122222222 2467999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~~ 121 (158)
++|.|+++|++.|.+.+..
T Consensus 216 ~~G~nI~~Ll~~L~~~lp~ 234 (460)
T PTZ00327 216 QLKYNIDVVLEYICTQIPI 234 (460)
T ss_pred CCCCCHHHHHHHHHhhCCC
Confidence 9999999999999876654
No 266
>PRK04004 translation initiation factor IF-2; Validated
Probab=97.86 E-value=0.00014 Score=60.99 Aligned_cols=83 Identities=20% Similarity=0.117 Sum_probs=52.4
Q ss_pred CCeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--c----------HHH-------
Q psy2600 28 CGKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--T----------LER------- 85 (158)
Q Consensus 28 vgk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~----------~~~------- 85 (158)
.++.+++|+|+++ +++++.+.. +.... +|+++++||+|+...... . ...
T Consensus 94 ~aD~~IlVvDa~~g~~~qt~e~i~~----~~~~~-----vpiIvviNK~D~~~~~~~~~~~~~~e~~~~~~~~v~~~f~~ 164 (586)
T PRK04004 94 LADIAILVVDINEGFQPQTIEAINI----LKRRK-----TPFVVAANKIDRIPGWKSTEDAPFLESIEKQSQRVQQELEE 164 (586)
T ss_pred hCCEEEEEEECCCCCCHhHHHHHHH----HHHcC-----CCEEEEEECcCCchhhhhhcCchHHHHHhhhhHHHHHHHHH
Confidence 3678999999987 566655432 22222 899999999998421000 0 000
Q ss_pred ----HHHHHHH-------------h--CCeEEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 86 ----HAKLAQS-------------L--HLHSFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 86 ----~~~~~~~-------------~--~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
....... + ..+++.+||.+|.|+.+++..+...+
T Consensus 165 ~l~ev~~~L~~~g~~~e~~~~~~~~~~~v~ivpiSA~tGeGi~dLl~~i~~~~ 217 (586)
T PRK04004 165 KLYELIGQLSELGFSADRFDRVKDFTKTVAIVPVSAKTGEGIPDLLMVLAGLA 217 (586)
T ss_pred HHHHHHHHHHhcCCChhhhhhhhccCCCceEeeccCCCCCChHHHHHHHHHHH
Confidence 0001111 1 25689999999999999998887544
No 267
>COG1162 Predicted GTPases [General function prediction only]
Probab=97.86 E-value=0.00015 Score=55.66 Aligned_cols=82 Identities=13% Similarity=0.102 Sum_probs=58.4
Q ss_pred EEEEEECCChh-HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQ-SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
.++|+.+.+|+ +...+..++-...... +.-+++.||+||.........+.....+..|...+.+|++++.++++
T Consensus 83 ~iiIvs~~~P~~~~~~ldR~Lv~ae~~g-----i~pvIvlnK~DL~~~~~~~~~~~~~~y~~~gy~v~~~s~~~~~~~~~ 157 (301)
T COG1162 83 AIIVVSLVDPDFNTNLLDRYLVLAEAGG-----IEPVIVLNKIDLLDDEEAAVKELLREYEDIGYPVLFVSAKNGDGLEE 157 (301)
T ss_pred EEEEEeccCCCCCHHHHHHHHHHHHHcC-----CcEEEEEEccccCcchHHHHHHHHHHHHhCCeeEEEecCcCcccHHH
Confidence 67777777765 5555566666665444 66688899999975443222345556677899999999999999999
Q ss_pred HHHHHHHH
Q psy2600 111 NTRTPEIN 118 (158)
Q Consensus 111 lf~~l~~~ 118 (158)
+...+...
T Consensus 158 l~~~l~~~ 165 (301)
T COG1162 158 LAELLAGK 165 (301)
T ss_pred HHHHhcCC
Confidence 88876554
No 268
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=97.84 E-value=0.00015 Score=59.29 Aligned_cols=59 Identities=8% Similarity=-0.047 Sum_probs=44.1
Q ss_pred cEEEEEEeCCCCC----CCcccc-------HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 64 TYVALVANKGDME----HQRVVT-------LERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 64 ~piilv~nK~Dl~----~~~~~~-------~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+|++||++|+|.- ...... ....+.++-.+|..+|.||++...|++.|+.+|...+...
T Consensus 197 ipi~VV~tksD~~~~Lek~~~~~~e~~DfIqq~LR~~cL~yGAsL~yts~~~~~n~~~L~~yi~h~l~~~ 266 (472)
T PF05783_consen 197 IPIVVVCTKSDKIETLEKETDWKEEHFDFIQQYLRTFCLKYGASLIYTSVKEEKNLDLLYKYILHRLYGF 266 (472)
T ss_pred cceEEEEecccHHHHHhhhcccchhhHHHHHHHHHHHHHhcCCeEEEeeccccccHHHHHHHHHHHhccC
Confidence 8999999999952 221111 1224556667899999999999999999999988877654
No 269
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=97.78 E-value=0.00011 Score=56.19 Aligned_cols=40 Identities=10% Similarity=0.048 Sum_probs=27.9
Q ss_pred cEEEEEEeCCCCCCCc--cccHHHHHHHHHHhCCeEEEEeCC
Q psy2600 64 TYVALVANKGDMEHQR--VVTLERHAKLAQSLHLHSFAVSAR 103 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~Sa~ 103 (158)
+|+++|+||+|+.... ........+.++.+++.+|.....
T Consensus 144 v~vi~VinK~D~l~~~e~~~~k~~i~~~l~~~~i~~~~~~~~ 185 (276)
T cd01850 144 VNIIPVIAKADTLTPEELKEFKQRIMEDIEEHNIKIYKFPED 185 (276)
T ss_pred CCEEEEEECCCcCCHHHHHHHHHHHHHHHHHcCCceECCCCC
Confidence 8999999999985422 223344556677788888876653
No 270
>KOG1532|consensus
Probab=97.77 E-value=0.00089 Score=50.95 Aligned_cols=28 Identities=21% Similarity=0.146 Sum_probs=23.4
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+..+-+|+.+|.|.+++|..+-..+.++
T Consensus 239 lrtv~VSs~tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532|consen 239 LRTVGVSSVTGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred CceEEEecccCCcHHHHHHHHHHHHHHH
Confidence 4578999999999999999887766554
No 271
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=97.75 E-value=0.00025 Score=57.04 Aligned_cols=78 Identities=21% Similarity=0.163 Sum_probs=44.7
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc-cc---HHHHHHHHHHhC---CeEEEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV-VT---LERHAKLAQSLH---LHSFAV 100 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~-~~---~~~~~~~~~~~~---~~~~~~ 100 (158)
..|.+++|+|++....-+..+.|. .+..... .+++++.||+|+..... .- .++...+.+..+ .+++.+
T Consensus 103 ~aD~allVVda~~G~~~qt~~~~~-~~~~~~~----~~iivviNK~D~~~~~~~~~~~i~~~~~~~~~~~~~~~~~iipi 177 (406)
T TIGR02034 103 TADLAVLLVDARKGVLEQTRRHSY-IASLLGI----RHVVLAVNKMDLVDYDEEVFENIKKDYLAFAEQLGFRDVTFIPL 177 (406)
T ss_pred hCCEEEEEEECCCCCccccHHHHH-HHHHcCC----CcEEEEEEecccccchHHHHHHHHHHHHHHHHHcCCCCccEEEe
Confidence 446799999987542222222222 2222221 56899999999863211 10 112222334444 469999
Q ss_pred eCCCCCCHHH
Q psy2600 101 SARTGDNCWV 110 (158)
Q Consensus 101 Sa~~~~~i~~ 110 (158)
||++|.|+.+
T Consensus 178 SA~~g~ni~~ 187 (406)
T TIGR02034 178 SALKGDNVVS 187 (406)
T ss_pred ecccCCCCcc
Confidence 9999999875
No 272
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=97.71 E-value=0.00019 Score=58.93 Aligned_cols=78 Identities=21% Similarity=0.194 Sum_probs=43.3
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHH----HHHHHHHhC----CeEEEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLER----HAKLAQSLH----LHSFAV 100 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~----~~~~~~~~~----~~~~~~ 100 (158)
.|.+++|+|++..-.-.....|. .+..... .+++++.||+|+.........+ ...+.+..+ .+++.+
T Consensus 131 aD~allVVDa~~G~~~qt~~~~~-l~~~lg~----~~iIvvvNKiD~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~iipv 205 (474)
T PRK05124 131 CDLAILLIDARKGVLDQTRRHSF-IATLLGI----KHLVVAVNKMDLVDYSEEVFERIREDYLTFAEQLPGNLDIRFVPL 205 (474)
T ss_pred CCEEEEEEECCCCccccchHHHH-HHHHhCC----CceEEEEEeeccccchhHHHHHHHHHHHHHHHhcCCCCCceEEEE
Confidence 35599999987532111111221 1222221 5789999999986321111111 222223332 668999
Q ss_pred eCCCCCCHHHH
Q psy2600 101 SARTGDNCWVN 111 (158)
Q Consensus 101 Sa~~~~~i~~l 111 (158)
||++|.|+.++
T Consensus 206 SA~~g~ni~~~ 216 (474)
T PRK05124 206 SALEGDNVVSQ 216 (474)
T ss_pred EeecCCCcccc
Confidence 99999998765
No 273
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.70 E-value=0.0004 Score=58.89 Aligned_cols=76 Identities=22% Similarity=0.177 Sum_probs=42.3
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC-CccccH---HHHHHHHHHhC---CeEEEEeC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH-QRVVTL---ERHAKLAQSLH---LHSFAVSA 102 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~~---~~~~~~~~~~~---~~~~~~Sa 102 (158)
|.+++|+|.+....-+... .+..+..... .+++++.||+|+.. ...... .+...+.+..+ .+++.+||
T Consensus 129 D~~llVvda~~g~~~~t~e-~~~~~~~~~~----~~iivvvNK~D~~~~~~~~~~~i~~~i~~~~~~~~~~~~~iipiSA 203 (632)
T PRK05506 129 DLAIILVDARKGVLTQTRR-HSFIASLLGI----RHVVLAVNKMDLVDYDQEVFDEIVADYRAFAAKLGLHDVTFIPISA 203 (632)
T ss_pred CEEEEEEECCCCccccCHH-HHHHHHHhCC----CeEEEEEEecccccchhHHHHHHHHHHHHHHHHcCCCCccEEEEec
Confidence 3388899986532211111 2222222221 57899999999863 111111 12222334444 35899999
Q ss_pred CCCCCHHH
Q psy2600 103 RTGDNCWV 110 (158)
Q Consensus 103 ~~~~~i~~ 110 (158)
++|.|+.+
T Consensus 204 ~~g~ni~~ 211 (632)
T PRK05506 204 LKGDNVVT 211 (632)
T ss_pred ccCCCccc
Confidence 99999874
No 274
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=97.69 E-value=0.00064 Score=56.45 Aligned_cols=29 Identities=10% Similarity=-0.348 Sum_probs=25.5
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
.++|..||.+|.||..+++.+++.++...
T Consensus 249 ~PV~~GSA~~n~Gv~~LLd~i~~~~P~P~ 277 (526)
T PRK00741 249 TPVFFGSALNNFGVQEFLDAFVEWAPAPQ 277 (526)
T ss_pred EEEEEeecccCcCHHHHHHHHHHHCCCCC
Confidence 46899999999999999999999987653
No 275
>PLN00043 elongation factor 1-alpha; Provisional
Probab=97.66 E-value=0.0002 Score=58.36 Aligned_cols=77 Identities=14% Similarity=0.128 Sum_probs=48.3
Q ss_pred CCeEEEEEEECCChhHHh-------hHHHHHHHHhhhcCCCCCc-EEEEEEeCCCCCCCcc----c--cHHHHHHHHHHh
Q psy2600 28 CGKIVIFMYDITSGQSFH-------SIPTWVDLFHLNRKSSTPT-YVALVANKGDMEHQRV----V--TLERHAKLAQSL 93 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~-------~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~----~--~~~~~~~~~~~~ 93 (158)
.+|++|+|+|+++ .+|+ .....+..+.... + ++|+++||+|+..... . ..++...+.+..
T Consensus 108 ~aD~aIlVVda~~-G~~e~g~~~~~qT~eh~~~~~~~g-----i~~iIV~vNKmD~~~~~~~~~~~~~i~~ei~~~l~~~ 181 (447)
T PLN00043 108 QADCAVLIIDSTT-GGFEAGISKDGQTREHALLAFTLG-----VKQMICCCNKMDATTPKYSKARYDEIVKEVSSYLKKV 181 (447)
T ss_pred hccEEEEEEEccc-CceecccCCCchHHHHHHHHHHcC-----CCcEEEEEEcccCCchhhhHHHHHHHHHHHHHHHHHc
Confidence 6678999999986 3443 2333333333333 5 5788999999752100 0 123445555555
Q ss_pred C-----CeEEEEeCCCCCCHHH
Q psy2600 94 H-----LHSFAVSARTGDNCWV 110 (158)
Q Consensus 94 ~-----~~~~~~Sa~~~~~i~~ 110 (158)
| ++|+.+||.+|.|+.+
T Consensus 182 g~~~~~~~~ipiSa~~G~ni~~ 203 (447)
T PLN00043 182 GYNPDKIPFVPISGFEGDNMIE 203 (447)
T ss_pred CCCcccceEEEEeccccccccc
Confidence 5 5699999999999853
No 276
>CHL00071 tufA elongation factor Tu
Probab=97.65 E-value=0.00063 Score=54.82 Aligned_cols=72 Identities=13% Similarity=0.036 Sum_probs=42.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCcccc---HHHHHHHHHHhC-----CeEEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVT---LERHAKLAQSLH-----LHSFAV 100 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~---~~~~~~~~~~~~-----~~~~~~ 100 (158)
|.+++|+|++..- .......+..+.... +| +|++.||+|+....... ..+...+.+..+ .+++.+
T Consensus 100 D~~ilVvda~~g~-~~qt~~~~~~~~~~g-----~~~iIvvvNK~D~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~ii~~ 173 (409)
T CHL00071 100 DGAILVVSAADGP-MPQTKEHILLAKQVG-----VPNIVVFLNKEDQVDDEELLELVELEVRELLSKYDFPGDDIPIVSG 173 (409)
T ss_pred CEEEEEEECCCCC-cHHHHHHHHHHHHcC-----CCEEEEEEEccCCCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEc
Confidence 3389999987532 122233344444433 67 77899999986432211 123334444433 578999
Q ss_pred eCCCCCC
Q psy2600 101 SARTGDN 107 (158)
Q Consensus 101 Sa~~~~~ 107 (158)
||.+|.|
T Consensus 174 Sa~~g~n 180 (409)
T CHL00071 174 SALLALE 180 (409)
T ss_pred chhhccc
Confidence 9998874
No 277
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.56 E-value=0.00038 Score=40.24 Aligned_cols=44 Identities=18% Similarity=0.125 Sum_probs=28.1
Q ss_pred CCeEEEEEEECCChh--HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCC
Q psy2600 28 CGKIVIFMYDITSGQ--SFHSIPTWVDLFHLNRKSSTPTYVALVANKGD 74 (158)
Q Consensus 28 vgk~~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 74 (158)
.+.+++|++|++... |.++....+++++..=.+ .|+++|.||+|
T Consensus 13 L~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~---~P~i~V~nK~D 58 (58)
T PF06858_consen 13 LADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPN---KPVIVVLNKID 58 (58)
T ss_dssp T-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTT---S-EEEEE--TT
T ss_pred hcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCC---CCEEEEEeccC
Confidence 456799999999865 456666778888854322 99999999998
No 278
>KOG1145|consensus
Probab=97.55 E-value=0.0013 Score=54.24 Aligned_cols=80 Identities=18% Similarity=0.215 Sum_probs=53.5
Q ss_pred CCeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHH-HHH------HHHhC--C
Q psy2600 28 CGKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH-AKL------AQSLH--L 95 (158)
Q Consensus 28 vgk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~------~~~~~--~ 95 (158)
+.|.+++|...+| +++.+. ++.....+ +|+|+..||||.+.. +.+.. +++ .+++| .
T Consensus 224 vtDIvVLVVAadDGVmpQT~Ea-------IkhAk~A~--VpiVvAinKiDkp~a---~pekv~~eL~~~gi~~E~~GGdV 291 (683)
T KOG1145|consen 224 VTDIVVLVVAADDGVMPQTLEA-------IKHAKSAN--VPIVVAINKIDKPGA---NPEKVKRELLSQGIVVEDLGGDV 291 (683)
T ss_pred cccEEEEEEEccCCccHhHHHH-------HHHHHhcC--CCEEEEEeccCCCCC---CHHHHHHHHHHcCccHHHcCCce
Confidence 5577888888877 444443 33222223 999999999997642 22332 222 23454 4
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
..+.+||++|.|+..|-+.++-..
T Consensus 292 QvipiSAl~g~nl~~L~eaill~A 315 (683)
T KOG1145|consen 292 QVIPISALTGENLDLLEEAILLLA 315 (683)
T ss_pred eEEEeecccCCChHHHHHHHHHHH
Confidence 689999999999999988876443
No 279
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=97.54 E-value=0.00065 Score=48.72 Aligned_cols=44 Identities=16% Similarity=0.293 Sum_probs=27.1
Q ss_pred EEEEEECCC-hhHHhhHHHHHHHHh-hhc--CCCCCcEEEEEEeCCCCCC
Q psy2600 32 VIFMYDITS-GQSFHSIPTWVDLFH-LNR--KSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 32 ~i~v~d~~~-~~s~~~~~~~~~~~~-~~~--~~~~~~piilv~nK~Dl~~ 77 (158)
+|||.|.+. .....+.-.++..+. ... ... +|+++++||.|+..
T Consensus 79 IIfvvDSs~~~~~~~~~Ae~Ly~iL~~~~~~~~~--~piLIacNK~Dl~~ 126 (181)
T PF09439_consen 79 IIFVVDSSTDQKELRDVAEYLYDILSDTEVQKNK--PPILIACNKQDLFT 126 (181)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHCCTT----EEEEEEE-TTSTT
T ss_pred EEEEEeCccchhhHHHHHHHHHHHHHhhhhccCC--CCEEEEEeCccccc
Confidence 999999974 445555544444444 211 222 99999999999865
No 280
>PRK00049 elongation factor Tu; Reviewed
Probab=97.46 E-value=0.0015 Score=52.51 Aligned_cols=86 Identities=12% Similarity=-0.054 Sum_probs=49.9
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEE-EEEeCCCCCCCcccc---HHHHHHHHHHh-----CCeEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVA-LVANKGDMEHQRVVT---LERHAKLAQSL-----HLHSF 98 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~---~~~~~~~~~~~-----~~~~~ 98 (158)
..|.+++|+|++... ......++..+.... +|.+ ++.||+|+....... ..+...+.... ..+++
T Consensus 98 ~aD~~llVVDa~~g~-~~qt~~~~~~~~~~g-----~p~iiVvvNK~D~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~iv 171 (396)
T PRK00049 98 QMDGAILVVSAADGP-MPQTREHILLARQVG-----VPYIVVFLNKCDMVDDEELLELVEMEVRELLSKYDFPGDDTPII 171 (396)
T ss_pred cCCEEEEEEECCCCC-chHHHHHHHHHHHcC-----CCEEEEEEeecCCcchHHHHHHHHHHHHHHHHhcCCCccCCcEE
Confidence 346699999987632 222334444454443 7765 689999986422211 11223333332 25789
Q ss_pred EEeCCCCC----------CHHHHHHHHHHHH
Q psy2600 99 AVSARTGD----------NCWVNTRTPEINP 119 (158)
Q Consensus 99 ~~Sa~~~~----------~i~~lf~~l~~~~ 119 (158)
.+||.++. ++..+++.|.+.+
T Consensus 172 ~iSa~~g~~~~~~~~w~~~~~~ll~~l~~~~ 202 (396)
T PRK00049 172 RGSALKALEGDDDEEWEKKILELMDAVDSYI 202 (396)
T ss_pred EeecccccCCCCcccccccHHHHHHHHHhcC
Confidence 99999875 4566776666654
No 281
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.45 E-value=0.00094 Score=51.82 Aligned_cols=111 Identities=11% Similarity=0.023 Sum_probs=73.3
Q ss_pred CCcceEEEEEEECCCC-------------CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC
Q psy2600 12 DNYEIQLKVVLLGDPS-------------CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ 78 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~-------------vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 78 (158)
...++..++.++-.++ +-|++++|...+.+..--+....+..+.-..- ..+++|-||+|+...
T Consensus 80 ~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigi----k~iiIvQNKIDlV~~ 155 (415)
T COG5257 80 AETELVRRVSFVDAPGHETLMATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGI----KNIIIVQNKIDLVSR 155 (415)
T ss_pred CCccEEEEEEEeeCCchHHHHHHHhcchhhhcceEEEEecCCCCCCCchHHHHHHHhhhcc----ceEEEEecccceecH
Confidence 3446777888887776 44779999998875443333333333432221 568999999999642
Q ss_pred cc--ccHHHHHHHHHH---hCCeEEEEeCCCCCCHHHHHHHHHHHHHHhHhhc
Q psy2600 79 RV--VTLERHAKLAQS---LHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSN 126 (158)
Q Consensus 79 ~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~ 126 (158)
.. ...++..+|.+- -+.+++.+||..+.||+.+++.|.+.+.......
T Consensus 156 E~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd~ 208 (415)
T COG5257 156 ERALENYEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERDL 208 (415)
T ss_pred HHHHHHHHHHHHHhcccccCCCceeeehhhhccCHHHHHHHHHHhCCCCccCC
Confidence 11 122333344332 2467999999999999999999999998765433
No 282
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=97.44 E-value=0.0019 Score=46.58 Aligned_cols=88 Identities=8% Similarity=-0.047 Sum_probs=46.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc------HHHHHHHHHHhCCeEEEEe----
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT------LERHAKLAQSLHLHSFAVS---- 101 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~S---- 101 (158)
+++|.++.+. + ......++.+++.-.+....++++|.|++|......+. ......+.+..+-.|+..+
T Consensus 87 illVi~~~~~-t-~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~~~~~~~~~~~~~~l~~l~~~c~~r~~~f~~~~~ 164 (196)
T cd01852 87 FLLVVPLGRF-T-EEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGGTLEDYLENSCEALKRLLEKCGGRYVAFNNKAK 164 (196)
T ss_pred EEEEEECCCc-C-HHHHHHHHHHHHHhChHhHhcEEEEEECccccCCCcHHHHHHhccHHHHHHHHHhCCeEEEEeCCCC
Confidence 8888887651 1 11122333333211110015678999999965332211 1233444455454444443
Q ss_pred -CCCCCCHHHHHHHHHHHHHH
Q psy2600 102 -ARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 102 -a~~~~~i~~lf~~l~~~~~~ 121 (158)
+..+..+.+|++.+.+.+.+
T Consensus 165 ~~~~~~q~~~Ll~~i~~~~~~ 185 (196)
T cd01852 165 GEEQEQQVKELLAKVESMVKE 185 (196)
T ss_pred cchhHHHHHHHHHHHHHHHHh
Confidence 34466788888888887765
No 283
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=97.40 E-value=0.0006 Score=52.67 Aligned_cols=94 Identities=15% Similarity=0.062 Sum_probs=55.5
Q ss_pred EEEEEEECCCCCCeE----------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHH-
Q psy2600 17 QLKVVLLGDPSCGKI----------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLER- 85 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~----------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~- 85 (158)
-+.++++-.+|+|.. ++++- .+.+.+++......+. . +|.++|.||+|+..........
T Consensus 126 g~D~viidT~G~~~~e~~i~~~aD~i~vv~---~~~~~~el~~~~~~l~--~-----~~~ivv~NK~Dl~~~~~~~~~~~ 195 (300)
T TIGR00750 126 GYDVIIVETVGVGQSEVDIANMADTFVVVT---IPGTGDDLQGIKAGLM--E-----IADIYVVNKADGEGATNVTIARL 195 (300)
T ss_pred CCCEEEEeCCCCchhhhHHHHhhceEEEEe---cCCccHHHHHHHHHHh--h-----hccEEEEEcccccchhHHHHHHH
Confidence 356777777777654 33332 2333444433333221 1 7889999999986432111000
Q ss_pred -----HHHHHHH---hCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 86 -----HAKLAQS---LHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 86 -----~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
...+.+. +..+++.+||+++.|++++++.+.+...
T Consensus 196 ~~~~~l~~l~~~~~~~~~~v~~iSA~~g~Gi~~L~~~i~~~~~ 238 (300)
T TIGR00750 196 MLALALEEIRRREDGWRPPVLTTSAVEGRGIDELWDAIEEHKT 238 (300)
T ss_pred HHHHHHhhccccccCCCCCEEEEEccCCCCHHHHHHHHHHHHH
Confidence 0111111 2235899999999999999999988744
No 284
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=97.35 E-value=0.0021 Score=50.45 Aligned_cols=93 Identities=12% Similarity=0.015 Sum_probs=54.5
Q ss_pred EEEEEECCCCCCeE----------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHH
Q psy2600 18 LKVVLLGDPSCGKI----------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLER 85 (158)
Q Consensus 18 ~ki~~~G~~~vgk~----------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~ 85 (158)
+.++++-..|+|.+ ++++.++ .+-+++......+.+ ..-++|.||+|+...... ...+
T Consensus 149 ~d~viieT~Gv~qs~~~i~~~aD~vlvv~~p---~~gd~iq~~k~gi~E-------~aDIiVVNKaDl~~~~~a~~~~~e 218 (332)
T PRK09435 149 YDVILVETVGVGQSETAVAGMVDFFLLLQLP---GAGDELQGIKKGIME-------LADLIVINKADGDNKTAARRAAAE 218 (332)
T ss_pred CCEEEEECCCCccchhHHHHhCCEEEEEecC---CchHHHHHHHhhhhh-------hhheEEeehhcccchhHHHHHHHH
Confidence 56677777777655 5666543 233333222221111 344899999998642211 1111
Q ss_pred HHHHHHH-------hCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 86 HAKLAQS-------LHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 86 ~~~~~~~-------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
....... +..+++.+||.++.||+++++.+.+.+.
T Consensus 219 l~~~L~l~~~~~~~w~~pVi~vSA~~g~GIdeL~~~I~~~~~ 260 (332)
T PRK09435 219 YRSALRLLRPKDPGWQPPVLTCSALEGEGIDEIWQAIEDHRA 260 (332)
T ss_pred HHHHHhcccccccCCCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 1111111 2246899999999999999999998765
No 285
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=97.32 E-value=0.0029 Score=48.14 Aligned_cols=43 Identities=16% Similarity=0.137 Sum_probs=28.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
.+++|+|+|.++.... ....++....... +|+++++||+|+..
T Consensus 95 aD~~IlVvda~~g~~~-~~~~i~~~~~~~~-----~P~iivvNK~D~~~ 137 (267)
T cd04169 95 VDSAVMVIDAAKGVEP-QTRKLFEVCRLRG-----IPIITFINKLDREG 137 (267)
T ss_pred CCEEEEEEECCCCccH-HHHHHHHHHHhcC-----CCEEEEEECCccCC
Confidence 5779999999874321 2234444443333 89999999999864
No 286
>PLN03127 Elongation factor Tu; Provisional
Probab=97.32 E-value=0.0022 Score=52.29 Aligned_cols=85 Identities=13% Similarity=-0.014 Sum_probs=47.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCccccH---HHHHHHHHHh-----CCeEEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVTL---ERHAKLAQSL-----HLHSFAV 100 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~-----~~~~~~~ 100 (158)
|.+++|.|.++... .+....+..+.... +| +|++.||+|+........ .+...+.... .++++.+
T Consensus 149 D~allVVda~~g~~-~qt~e~l~~~~~~g-----ip~iIvviNKiDlv~~~~~~~~i~~~i~~~l~~~~~~~~~vpiip~ 222 (447)
T PLN03127 149 DGGILVVSAPDGPM-PQTKEHILLARQVG-----VPSLVVFLNKVDVVDDEELLELVEMELRELLSFYKFPGDEIPIIRG 222 (447)
T ss_pred CEEEEEEECCCCCc-hhHHHHHHHHHHcC-----CCeEEEEEEeeccCCHHHHHHHHHHHHHHHHHHhCCCCCcceEEEe
Confidence 45999999875321 22233334444333 77 578999999864222111 1122222222 2567888
Q ss_pred eCC---CCCC-------HHHHHHHHHHHHH
Q psy2600 101 SAR---TGDN-------CWVNTRTPEINPL 120 (158)
Q Consensus 101 Sa~---~~~~-------i~~lf~~l~~~~~ 120 (158)
|+. ++.| +.+|++.+.+.+.
T Consensus 223 Sa~sa~~g~n~~~~~~~i~~Ll~~l~~~lp 252 (447)
T PLN03127 223 SALSALQGTNDEIGKNAILKLMDAVDEYIP 252 (447)
T ss_pred ccceeecCCCcccccchHHHHHHHHHHhCC
Confidence 775 4544 6777777776654
No 287
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=97.29 E-value=0.0023 Score=48.47 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=41.2
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeE--EEEeCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHS--FAVSARTGD 106 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~--~~~Sa~~~~ 106 (158)
++.+++|+|+++.........| ..+.... +|.++++||+|+.... .......+.+.++... +.+...++.
T Consensus 88 aD~~i~Vvd~~~g~~~~~~~~~-~~~~~~~-----~p~iivvNK~D~~~~~--~~~~~~~l~~~~~~~~~~~~ip~~~~~ 159 (268)
T cd04170 88 ADAALVVVSAQSGVEVGTEKLW-EFADEAG-----IPRIIFINKMDRERAD--FDKTLAALQEAFGRPVVPLQLPIGEGD 159 (268)
T ss_pred CCEEEEEEeCCCCCCHHHHHHH-HHHHHcC-----CCEEEEEECCccCCCC--HHHHHHHHHHHhCCCeEEEEecccCCC
Confidence 3679999999876544333333 2333333 8999999999986532 1223344444555443 334444444
Q ss_pred CH
Q psy2600 107 NC 108 (158)
Q Consensus 107 ~i 108 (158)
++
T Consensus 160 ~~ 161 (268)
T cd04170 160 DF 161 (268)
T ss_pred ce
Confidence 43
No 288
>PLN03126 Elongation factor Tu; Provisional
Probab=97.26 E-value=0.0021 Score=52.85 Aligned_cols=70 Identities=14% Similarity=0.031 Sum_probs=41.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCccccH---HHHHHHHHHh-----CCeEEEEeC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVTL---ERHAKLAQSL-----HLHSFAVSA 102 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~---~~~~~~~~~~-----~~~~~~~Sa 102 (158)
+++|+|+++... .....++..+.... +| ++++.||+|+........ .+...+.+.. ..+++.+|+
T Consensus 171 ailVVda~~G~~-~qt~e~~~~~~~~g-----i~~iIvvvNK~Dl~~~~~~~~~i~~~i~~~l~~~g~~~~~~~~vp~Sa 244 (478)
T PLN03126 171 AILVVSGADGPM-PQTKEHILLAKQVG-----VPNMVVFLNKQDQVDDEELLELVELEVRELLSSYEFPGDDIPIISGSA 244 (478)
T ss_pred EEEEEECCCCCc-HHHHHHHHHHHHcC-----CCeEEEEEecccccCHHHHHHHHHHHHHHHHHhcCCCcCcceEEEEEc
Confidence 899999876422 22234444444443 66 788999999864222111 1233344443 356899999
Q ss_pred CCCCC
Q psy2600 103 RTGDN 107 (158)
Q Consensus 103 ~~~~~ 107 (158)
.++.+
T Consensus 245 ~~g~n 249 (478)
T PLN03126 245 LLALE 249 (478)
T ss_pred ccccc
Confidence 88754
No 289
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=97.25 E-value=0.004 Score=51.85 Aligned_cols=29 Identities=10% Similarity=-0.380 Sum_probs=25.1
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
.++|.-||.+|.||..|++.+++.++...
T Consensus 250 ~PV~~GSA~~n~Gv~~LLd~i~~~~PsP~ 278 (527)
T TIGR00503 250 TPVFFGTALGNFGVDHFLDGLLQWAPKPE 278 (527)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCCCc
Confidence 35788999999999999999999987653
No 290
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=97.19 E-value=0.001 Score=49.77 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=42.3
Q ss_pred EEEEEEECCC---hhHHhhHHHHHHHHh---hhcCCCCCcEEEEEEeCCCCCCCc-ccc------------------HHH
Q psy2600 31 IVIFMYDITS---GQSFHSIPTWVDLFH---LNRKSSTPTYVALVANKGDMEHQR-VVT------------------LER 85 (158)
Q Consensus 31 ~~i~v~d~~~---~~s~~~~~~~~~~~~---~~~~~~~~~piilv~nK~Dl~~~~-~~~------------------~~~ 85 (158)
+++++.|... +..|-+ .++-.+. +.. .|.|.|.||+|+.+.. ... ..-
T Consensus 125 ~~v~LvD~~~~~~~~~f~s--~~L~s~s~~~~~~-----lP~vnvlsK~Dl~~~~~~~~l~~~~d~~~l~~~~~~~~~~l 197 (238)
T PF03029_consen 125 VVVFLVDSSFCSDPSKFVS--SLLLSLSIMLRLE-----LPHVNVLSKIDLLSKYLEFILEWFEDPDSLEDLLESDYKKL 197 (238)
T ss_dssp EEEEEE-GGG-SSHHHHHH--HHHHHHHHHHHHT-----SEEEEEE--GGGS-HHHHHHHHHHHSHHHHHHHHHT-HHHH
T ss_pred EEEEEEecccccChhhHHH--HHHHHHHHHhhCC-----CCEEEeeeccCcccchhHHHHHHhcChHHHHHHHHHHHHHH
Confidence 3788888753 333322 2222222 223 9999999999996411 000 001
Q ss_pred HHHHHH---HhC-C-eEEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 86 HAKLAQ---SLH-L-HSFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 86 ~~~~~~---~~~-~-~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
.+.+++ .++ . .++.+|+.++.++.+++..+-+.+
T Consensus 198 ~~~i~~~l~~~~~~~~f~pls~~~~~~~~~L~~~id~a~ 236 (238)
T PF03029_consen 198 NEEIAELLDDFGLVIRFIPLSSKDGEGMEELLAAIDKAN 236 (238)
T ss_dssp HHHHHHHCCCCSSS---EE-BTTTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhhcCCCceEEEEECCChHHHHHHHHHHHHHh
Confidence 111222 223 3 689999999999999998876653
No 291
>PRK12739 elongation factor G; Reviewed
Probab=97.18 E-value=0.007 Score=52.02 Aligned_cols=28 Identities=11% Similarity=-0.248 Sum_probs=23.4
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
+++..||.++.|+..+++.+++.++...
T Consensus 254 Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 281 (691)
T PRK12739 254 PVLCGSAFKNKGVQPLLDAVVDYLPSPL 281 (691)
T ss_pred EEEeccccCCccHHHHHHHHHHHCCChh
Confidence 4677899999999999999999887654
No 292
>KOG0090|consensus
Probab=97.16 E-value=0.0073 Score=44.29 Aligned_cols=43 Identities=16% Similarity=0.272 Sum_probs=26.0
Q ss_pred EEEEEECCC-hhHHhhHHHHHHHHh-hh--cCCCCCcEEEEEEeCCCCC
Q psy2600 32 VIFMYDITS-GQSFHSIPTWVDLFH-LN--RKSSTPTYVALVANKGDME 76 (158)
Q Consensus 32 ~i~v~d~~~-~~s~~~~~~~~~~~~-~~--~~~~~~~piilv~nK~Dl~ 76 (158)
++||.|..- .....+.-.++-.+. .. .... +|++++.||.|+.
T Consensus 112 iVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~--~~vLIaCNKqDl~ 158 (238)
T KOG0090|consen 112 IVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNK--PPVLIACNKQDLF 158 (238)
T ss_pred EEEEEeccccchhhHHHHHHHHHHHHhhccccCC--CCEEEEecchhhh
Confidence 888888653 333334434444443 22 1222 8999999999985
No 293
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.15 E-value=0.0017 Score=42.71 Aligned_cols=13 Identities=38% Similarity=0.887 Sum_probs=10.4
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|+++|.+++|||
T Consensus 1 ~V~iiG~~~~GKS 13 (116)
T PF01926_consen 1 RVAIIGRPNVGKS 13 (116)
T ss_dssp EEEEEESTTSSHH
T ss_pred CEEEECCCCCCHH
Confidence 5778888888887
No 294
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.13 E-value=0.0012 Score=46.94 Aligned_cols=42 Identities=17% Similarity=0.154 Sum_probs=26.3
Q ss_pred eEEEEEEECCChhHHhhHHHHHHH--HhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDL--FHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~--~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
|.+++|.|+.++-+..+ ..+.+. +...+ .|.++|.||+|+..
T Consensus 1 DvVl~VvDar~p~~~~~-~~i~~~~~l~~~~-----kp~IlVlNK~DL~~ 44 (172)
T cd04178 1 DVILEVLDARDPLGCRC-PQVEEAVLQAGGN-----KKLVLVLNKIDLVP 44 (172)
T ss_pred CEEEEEEECCCCCCCCC-HHHHHHHHhccCC-----CCEEEEEehhhcCC
Confidence 45789999877533221 223333 22222 89999999999853
No 295
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=97.08 E-value=0.0056 Score=46.67 Aligned_cols=44 Identities=14% Similarity=-0.050 Sum_probs=28.8
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
..+++++|.|.++...- ....++..+.... +|++++.||+|+.+
T Consensus 87 ~aD~ailVVDa~~g~~~-~t~~~~~~~~~~~-----~p~ivviNK~D~~~ 130 (270)
T cd01886 87 VLDGAVAVFDAVAGVEP-QTETVWRQADRYN-----VPRIAFVNKMDRTG 130 (270)
T ss_pred HcCEEEEEEECCCCCCH-HHHHHHHHHHHcC-----CCEEEEEECCCCCC
Confidence 44669999998764221 1223444444443 89999999999864
No 296
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.01 E-value=0.0021 Score=49.41 Aligned_cols=55 Identities=16% Similarity=0.105 Sum_probs=38.4
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSL--HLHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
..-++|.||+|+........+......+.. ...++.+||++|+|++++.++|...
T Consensus 231 ~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~~L~~~ 287 (290)
T PRK10463 231 AASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred cCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHHHHHHh
Confidence 456999999998642111122333333333 4779999999999999999999764
No 297
>PRK00007 elongation factor G; Reviewed
Probab=97.00 E-value=0.014 Score=50.15 Aligned_cols=29 Identities=10% Similarity=-0.219 Sum_probs=24.1
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
++++..||.++.|+..|++.+++.++...
T Consensus 255 ~Pv~~gSa~~~~Gv~~LLd~I~~~lPsP~ 283 (693)
T PRK00007 255 VPVLCGSAFKNKGVQPLLDAVVDYLPSPL 283 (693)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCCChh
Confidence 34677899999999999999999887654
No 298
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=96.96 E-value=0.0021 Score=46.45 Aligned_cols=53 Identities=25% Similarity=0.109 Sum_probs=40.3
Q ss_pred EEEEEeCCCCCCCccccHHHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 66 VALVANKGDMEHQRVVTLERHAKLAQSL--HLHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 66 iilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
=++|.||.||...-..+.+....-++.. +.+++++|+++|+|+++++.++...
T Consensus 145 DllVInK~DLa~~v~~dlevm~~da~~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 145 DLLVINKTDLAPYVGADLEVMARDAKEVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred eEEEEehHHhHHHhCccHHHHHHHHHHhCCCCCEEEEeCCCCcCHHHHHHHHHhh
Confidence 4789999999654344445566655554 4789999999999999998887654
No 299
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=96.95 E-value=0.0089 Score=46.60 Aligned_cols=106 Identities=15% Similarity=0.134 Sum_probs=65.4
Q ss_pred ceEEEEEEECCCCC-----------CeEEEEEEECCCh----------hHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeC
Q psy2600 15 EIQLKVVLLGDPSC-----------GKIVIFMYDITSG----------QSFHSIPTWVDLFHLNRK-SSTPTYVALVANK 72 (158)
Q Consensus 15 ~~~~ki~~~G~~~v-----------gk~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK 72 (158)
++.++++.+|.... .++++||.|+++- ..+.+....++.+..... .+ +|+++++||
T Consensus 160 ~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i~~~~~~~~--~pill~~NK 237 (317)
T cd00066 160 NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSICNSRWFAN--TSIILFLNK 237 (317)
T ss_pred ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHHHhCccccC--CCEEEEccC
Confidence 46788898988753 2569999999873 345444444444443211 22 899999999
Q ss_pred CCCCC----------------CccccHHHHHHHHHH-----h-----CCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 73 GDMEH----------------QRVVTLERHAKLAQS-----L-----HLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 73 ~Dl~~----------------~~~~~~~~~~~~~~~-----~-----~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
.|+.. ....+.+.+..+... . .+-...++|.+-.++..+|+.+.+.+...
T Consensus 238 ~D~f~~ki~~~~l~~~fp~y~g~~~~~~~~~~~i~~~F~~~~~~~~~~~~~~~t~a~Dt~~i~~vf~~v~~~i~~~ 313 (317)
T cd00066 238 KDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRNPNKEIYPHFTCATDTENIRFVFDAVKDIILQN 313 (317)
T ss_pred hHHHHHhhcCCCccccCCCCCCCCCCHHHHHHHHHHHHHHhhcCCCCeEEEEeccccchHHHHHHHHHHHHHHHHH
Confidence 99621 101123334333322 1 12245678888888888888888777654
No 300
>PRK12740 elongation factor G; Reviewed
Probab=96.95 E-value=0.0068 Score=51.84 Aligned_cols=29 Identities=14% Similarity=-0.152 Sum_probs=24.9
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
++++..||++|.|+..|++.++..++...
T Consensus 237 ~Pv~~gSA~~~~Gv~~LLd~i~~~lPsp~ 265 (668)
T PRK12740 237 VPVFCGSALKNKGVQRLLDAVVDYLPSPL 265 (668)
T ss_pred EEEEeccccCCccHHHHHHHHHHHCCChh
Confidence 34788999999999999999999887654
No 301
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=96.86 E-value=0.0082 Score=51.57 Aligned_cols=42 Identities=14% Similarity=-0.039 Sum_probs=28.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
|++++|+|.++......... +..+.... +|+++++||+|+..
T Consensus 100 D~~ilVvda~~g~~~~~~~~-~~~~~~~~-----~p~ivviNK~D~~~ 141 (689)
T TIGR00484 100 DGAVAVLDAVGGVQPQSETV-WRQANRYE-----VPRIAFVNKMDKTG 141 (689)
T ss_pred CEEEEEEeCCCCCChhHHHH-HHHHHHcC-----CCEEEEEECCCCCC
Confidence 34999999987544443333 33344333 89999999999874
No 302
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=96.85 E-value=0.0048 Score=45.68 Aligned_cols=43 Identities=19% Similarity=0.062 Sum_probs=28.9
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
.++++++|+|+++..+.+....| ....... +|+++|+||+|+.
T Consensus 96 ~aD~~ilVvD~~~g~~~~t~~~l-~~~~~~~-----~p~ilviNKiD~~ 138 (222)
T cd01885 96 LCDGALVVVDAVEGVCVQTETVL-RQALKER-----VKPVLVINKIDRL 138 (222)
T ss_pred hcCeeEEEEECCCCCCHHHHHHH-HHHHHcC-----CCEEEEEECCCcc
Confidence 44679999999876555433222 2222222 8899999999975
No 303
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=96.83 E-value=0.034 Score=43.84 Aligned_cols=107 Identities=15% Similarity=0.085 Sum_probs=65.3
Q ss_pred ceEEEEEEECCCCC-----------CeEEEEEEECCCh----------hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCC
Q psy2600 15 EIQLKVVLLGDPSC-----------GKIVIFMYDITSG----------QSFHSIPTWVDLFHLNRKSSTPTYVALVANKG 73 (158)
Q Consensus 15 ~~~~ki~~~G~~~v-----------gk~~i~v~d~~~~----------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 73 (158)
.+.++++.+|..+. .++++||.|+++- ..+.+....++.+.+.. .....|++|++||.
T Consensus 183 ~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l~~~~-~~~~~piil~~NK~ 261 (342)
T smart00275 183 KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESICNSR-WFANTSIILFLNKI 261 (342)
T ss_pred CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHHHcCc-cccCCcEEEEEecH
Confidence 35578899998752 3569999999862 34555555555554321 11128999999999
Q ss_pred CCCCC---------------ccccHHHHHHHHHH-----h----C--CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 74 DMEHQ---------------RVVTLERHAKLAQS-----L----H--LHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 74 Dl~~~---------------~~~~~~~~~~~~~~-----~----~--~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
|+... ...+.+.+..+... . + +-.+.|+|.+-.++..+|+.+...+...
T Consensus 262 D~~~~Kl~~~~l~~~fp~y~g~~~~~~~~~yi~~~F~~~~~~~~~r~~y~h~t~a~Dt~~~~~v~~~v~~~I~~~ 336 (342)
T smart00275 262 DLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNRNSSRKSIYHHFTCATDTRNIRVVFDAVKDIILQR 336 (342)
T ss_pred HhHHHHhCCCchhccCCCCCCCCCHHHHHHHHHHHHHHhccCCCCceEEEEEeeecccHHHHHHHHHHHHHHHHH
Confidence 97210 00122333333221 1 1 2245677888888999998888777654
No 304
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=96.76 E-value=0.014 Score=47.73 Aligned_cols=78 Identities=14% Similarity=0.104 Sum_probs=43.9
Q ss_pred CCeEEEEEEECCChh---HH---hhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCC---C-ccc--cHHHHHHHHHHhC
Q psy2600 28 CGKIVIFMYDITSGQ---SF---HSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEH---Q-RVV--TLERHAKLAQSLH 94 (158)
Q Consensus 28 vgk~~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~---~-~~~--~~~~~~~~~~~~~ 94 (158)
..|.+++|.|++... .| .+....+..+.... +| +|++.||+|... . ... ...+...+....+
T Consensus 108 ~aD~ailVVda~~G~~e~~~~~~~qT~eh~~~~~~~g-----i~~iiv~vNKmD~~~~~~~~~~~~~i~~~i~~~l~~~g 182 (446)
T PTZ00141 108 QADVAILVVASTAGEFEAGISKDGQTREHALLAFTLG-----VKQMIVCINKMDDKTVNYSQERYDEIKKEVSAYLKKVG 182 (446)
T ss_pred hcCEEEEEEEcCCCceecccCCCccHHHHHHHHHHcC-----CCeEEEEEEccccccchhhHHHHHHHHHHHHHHHHhcC
Confidence 446699999987531 11 12223333344333 55 789999999532 1 111 0112222333333
Q ss_pred -----CeEEEEeCCCCCCHHH
Q psy2600 95 -----LHSFAVSARTGDNCWV 110 (158)
Q Consensus 95 -----~~~~~~Sa~~~~~i~~ 110 (158)
++++.+|+.+|.|+.+
T Consensus 183 ~~~~~~~~ipiSa~~g~ni~~ 203 (446)
T PTZ00141 183 YNPEKVPFIPISGWQGDNMIE 203 (446)
T ss_pred CCcccceEEEeecccCCCccc
Confidence 5689999999999864
No 305
>KOG3886|consensus
Probab=96.68 E-value=0.01 Score=44.26 Aligned_cols=43 Identities=14% Similarity=0.250 Sum_probs=29.2
Q ss_pred EEEEEECCChhHHhhHHH---HHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPT---WVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~---~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
+++|||+...+-..++.. .++.+.++.+. ..+.+...|.|+..
T Consensus 85 li~vFDves~e~~~D~~~yqk~Le~ll~~SP~---AkiF~l~hKmDLv~ 130 (295)
T KOG3886|consen 85 LIYVFDVESREMEKDFHYYQKCLEALLQNSPE---AKIFCLLHKMDLVQ 130 (295)
T ss_pred eeeeeeccchhhhhhHHHHHHHHHHHHhcCCc---ceEEEEEeechhcc
Confidence 889999987654444443 44444455544 67888899999863
No 306
>COG3596 Predicted GTPase [General function prediction only]
Probab=96.66 E-value=0.018 Score=43.89 Aligned_cols=58 Identities=17% Similarity=-0.002 Sum_probs=37.1
Q ss_pred cEEEEEEeCCCCCCC--------ccc-------cHHHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQ--------RVV-------TLERHAKLAQSL--HLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~--------~~~-------~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
.+++++.|.+|.... ..- ..+++....+.. =.+++..|...+.|++++...++..+..
T Consensus 149 ~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 149 KRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQEVKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred ceeEEEEehhhhhccccccccccCCCCHHHHHHHHHHHHHHHHHHhhcCCeEEeccccCccHHHHHHHHHHhCcc
Confidence 789999999996322 111 111111111111 1357788889999999999999988764
No 307
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=96.56 E-value=0.0039 Score=47.08 Aligned_cols=57 Identities=14% Similarity=-0.014 Sum_probs=33.2
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHH---H----hCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQ---S----LHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~---~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+.=++|.||+|.+.... ...+.+.... . |..+++.|||.++.||+++++.+.+....
T Consensus 168 iaDi~vVNKaD~~gA~~-~~~~l~~~l~l~~~~~~~W~ppV~~tsA~~~~Gi~eL~~~i~~~~~~ 231 (266)
T PF03308_consen 168 IADIFVVNKADRPGADR-TVRDLRSMLHLLREREDGWRPPVLKTSALEGEGIDELWEAIDEHRDY 231 (266)
T ss_dssp H-SEEEEE--SHHHHHH-HHHHHHHHHHHCSTSCTSB--EEEEEBTTTTBSHHHHHHHHHHHHHH
T ss_pred hccEEEEeCCChHHHHH-HHHHHHHHHhhccccccCCCCCEEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 44489999999643111 1112222221 1 22478999999999999999998875433
No 308
>KOG1486|consensus
Probab=96.52 E-value=0.048 Score=41.29 Aligned_cols=51 Identities=22% Similarity=0.005 Sum_probs=41.6
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
++.+.|.||+|. ++.++...+++..+ -+.+||.-+.|++.+++.++..+.-
T Consensus 239 ~~ClYvYnKID~-----vs~eevdrlAr~Pn--svViSC~m~lnld~lle~iWe~l~L 289 (364)
T KOG1486|consen 239 IKCLYVYNKIDQ-----VSIEEVDRLARQPN--SVVISCNMKLNLDRLLERIWEELNL 289 (364)
T ss_pred EEEEEEeeccce-----ecHHHHHHHhcCCC--cEEEEeccccCHHHHHHHHHHHhce
Confidence 788999999994 45678888888754 3577899999999999999987754
No 309
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=96.50 E-value=0.033 Score=45.15 Aligned_cols=64 Identities=8% Similarity=-0.000 Sum_probs=43.2
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCC--CCHHHHHHHHHH
Q psy2600 47 IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTG--DNCWVNTRTPEI 117 (158)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~lf~~l~~ 117 (158)
...|++++++.+ +|+++|.||+|-.... +......+.+.++.+++.+||..- ..|..++..++-
T Consensus 169 Ee~~i~eLk~~~-----kPfiivlN~~dp~~~e--t~~l~~~l~eky~vpvl~v~c~~l~~~DI~~il~~vL~ 234 (492)
T TIGR02836 169 EERVIEELKELN-----KPFIILLNSTHPYHPE--TEALRQELEEKYDVPVLAMDVESMRESDILSVLEEVLY 234 (492)
T ss_pred HHHHHHHHHhcC-----CCEEEEEECcCCCCch--hHHHHHHHHHHhCCceEEEEHHHcCHHHHHHHHHHHHh
Confidence 458999998776 9999999999932211 233445666778888888887643 345555554443
No 310
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=96.49 E-value=0.024 Score=41.98 Aligned_cols=73 Identities=12% Similarity=0.176 Sum_probs=38.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCcc-ccH--HHHHH-HHHHh--CCeEEEEe
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRV-VTL--ERHAK-LAQSL--HLHSFAVS 101 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~-~~~--~~~~~-~~~~~--~~~~~~~S 101 (158)
.|.+++++|.+....... ..++..+.... .| +++|.||+|+.+... ... ..... +.... +..++.+|
T Consensus 104 aDvVllviDa~~~~~~~~-~~i~~~l~~~g-----~p~vi~VvnK~D~~~~~~~~~~~~~~l~~~~~~~~~~~~ki~~iS 177 (225)
T cd01882 104 ADLVLLLIDASFGFEMET-FEFLNILQVHG-----FPRVMGVLTHLDLFKKNKTLRKTKKRLKHRFWTEVYQGAKLFYLS 177 (225)
T ss_pred cCEEEEEEecCcCCCHHH-HHHHHHHHHcC-----CCeEEEEEeccccCCcHHHHHHHHHHHHHHHHHhhCCCCcEEEEe
Confidence 455999999875332221 23344443333 56 456999999853221 110 11111 22221 35689999
Q ss_pred CCCCCC
Q psy2600 102 ARTGDN 107 (158)
Q Consensus 102 a~~~~~ 107 (158)
|++...
T Consensus 178 a~~~~~ 183 (225)
T cd01882 178 GIVHGR 183 (225)
T ss_pred eccCCC
Confidence 998743
No 311
>KOG0461|consensus
Probab=96.41 E-value=0.014 Score=45.98 Aligned_cols=100 Identities=18% Similarity=0.216 Sum_probs=59.8
Q ss_pred EECCCCCCeEEEEEEECCChhHHhhHHH-HHHHHhhhcCCCCCcEEEEEEeCCCCCC--CccccHHH-HHHHHHHh----
Q psy2600 22 LLGDPSCGKIVIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEH--QRVVTLER-HAKLAQSL---- 93 (158)
Q Consensus 22 ~~G~~~vgk~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~-~~~~~~~~---- 93 (158)
++|.+.+=|-.++|+|+....-.+..+. .+.++. + ...++|.||+|... ++....++ ..++.+.+
T Consensus 87 iiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~--c-----~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461|consen 87 IIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELL--C-----KKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred HHhhhheeeeeeEEEehhcccccccchhhhhhhhh--c-----cceEEEEeccccccchhhhhHHHHHHHHHHHHHHhcC
Confidence 3566666677999999875322222221 222322 2 44688888888642 22211111 22222221
Q ss_pred --C-CeEEEEeCCCC----CCHHHHHHHHHHHHHHhHhhccc
Q psy2600 94 --H-LHSFAVSARTG----DNCWVNTRTPEINPLKYLQSNNE 128 (158)
Q Consensus 94 --~-~~~~~~Sa~~~----~~i~~lf~~l~~~~~~~~~~~~~ 128 (158)
| .+++++||+.| +.|.+|.+.+.+.+.+..+....
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~g 201 (522)
T KOG0461|consen 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEG 201 (522)
T ss_pred cCCCCceeEEecCCCccchhHHHHHHHHHHHhhcCCCcCCCC
Confidence 2 57899999999 78888888888888877655444
No 312
>KOG1144|consensus
Probab=96.12 E-value=0.046 Score=47.05 Aligned_cols=33 Identities=12% Similarity=-0.148 Sum_probs=26.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHhHhhccc
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINPLKYLQSNNE 128 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~~~~ 128 (158)
+++.|||.+|.||.+|+.+|++.....+.....
T Consensus 663 siVPTSA~sGeGipdLl~llv~ltQk~m~~kl~ 695 (1064)
T KOG1144|consen 663 SIVPTSAISGEGIPDLLLLLVQLTQKTMVEKLA 695 (1064)
T ss_pred EeeecccccCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999887766554443
No 313
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=95.96 E-value=0.064 Score=43.07 Aligned_cols=76 Identities=18% Similarity=0.166 Sum_probs=42.5
Q ss_pred EEEEEECCChh---HHhh---HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHH----HHHHHHHhC-----Ce
Q psy2600 32 VIFMYDITSGQ---SFHS---IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLER----HAKLAQSLH-----LH 96 (158)
Q Consensus 32 ~i~v~d~~~~~---s~~~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~----~~~~~~~~~-----~~ 96 (158)
+|||.|..+.+ .|.- .+...-..+...- .-+|++.||.|+.+=.+-..++ ...+.+..| ..
T Consensus 112 aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi----~~lIVavNKMD~v~wde~rf~ei~~~v~~l~k~~G~~~~~v~ 187 (428)
T COG5256 112 AVLVVDARDGEFEAGFGVGGQTREHAFLARTLGI----KQLIVAVNKMDLVSWDEERFEEIVSEVSKLLKMVGYNPKDVP 187 (428)
T ss_pred EEEEEECCCCccccccccCCchhHHHHHHHhcCC----ceEEEEEEcccccccCHHHHHHHHHHHHHHHHHcCCCccCCe
Confidence 99999987642 2211 1221212222221 5689999999987411111111 122333433 45
Q ss_pred EEEEeCCCCCCHHHH
Q psy2600 97 SFAVSARTGDNCWVN 111 (158)
Q Consensus 97 ~~~~Sa~~~~~i~~l 111 (158)
|+.+|+..|.|+.+.
T Consensus 188 FIPiSg~~G~Nl~~~ 202 (428)
T COG5256 188 FIPISGFKGDNLTKK 202 (428)
T ss_pred EEecccccCCccccc
Confidence 999999999997654
No 314
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=95.94 E-value=0.017 Score=45.06 Aligned_cols=54 Identities=15% Similarity=0.005 Sum_probs=38.8
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHh-CCeEEEEeCCCCCCHHHHHH-HHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSL-HLHSFAVSARTGDNCWVNTR-TPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~~lf~-~l~~~~~~ 121 (158)
+|+|+|+||+|+..... ....+.... ...++.+||+.+.++.++.+ .+.+.+++
T Consensus 215 KPvI~VlNK~Dl~~~~~----~~~~l~~~~~~~~iI~iSA~~e~~L~~L~~~~i~~~lPe 270 (318)
T cd01899 215 KPMVIAANKADIPDAEN----NISKLRLKYPDEIVVPTSAEAELALRRAAKQGLIKYDPG 270 (318)
T ss_pred CcEEEEEEHHHccChHH----HHHHHHhhCCCCeEEEEeCcccccHHHHHHhhHHHhCCC
Confidence 89999999999753221 111222233 45689999999999999997 58887754
No 315
>KOG1143|consensus
Probab=95.92 E-value=0.17 Score=40.51 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=18.0
Q ss_pred CCCCcceEEEEEEECCCCCCeE
Q psy2600 10 HNDNYEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 10 ~~~~~~~~~ki~~~G~~~vgk~ 31 (158)
.+.-.-+.++++++|+.-+||+
T Consensus 160 Pd~QqfievRvAVlGg~D~GKS 181 (591)
T KOG1143|consen 160 PDSQQFIEVRVAVLGGCDVGKS 181 (591)
T ss_pred CCcccceEEEEEEecCcccCcc
Confidence 3445558899999999999998
No 316
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.86 E-value=0.022 Score=44.51 Aligned_cols=76 Identities=17% Similarity=0.106 Sum_probs=48.3
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
.+.++-|.|+-++.+... ..+...... .+.++|+||+||..... .......+.+..+...+.+++..+.+.
T Consensus 35 ~d~vvevvDar~P~~s~~-----~~l~~~v~~---k~~i~vlNK~DL~~~~~-~~~W~~~~~~~~~~~~~~v~~~~~~~~ 105 (322)
T COG1161 35 VDVVVEVVDARDPLGTRN-----PELERIVKE---KPKLLVLNKADLAPKEV-TKKWKKYFKKEEGIKPIFVSAKSRQGG 105 (322)
T ss_pred CCEEEEEEeccccccccC-----ccHHHHHcc---CCcEEEEehhhcCCHHH-HHHHHHHHHhcCCCccEEEEeecccCc
Confidence 356899999988765443 222222222 55599999999975332 333444455555666788888888876
Q ss_pred HHHHH
Q psy2600 109 WVNTR 113 (158)
Q Consensus 109 ~~lf~ 113 (158)
..+..
T Consensus 106 ~~i~~ 110 (322)
T COG1161 106 KKIRK 110 (322)
T ss_pred cchHH
Confidence 66664
No 317
>KOG2486|consensus
Probab=95.81 E-value=0.0071 Score=46.13 Aligned_cols=54 Identities=15% Similarity=-0.107 Sum_probs=32.2
Q ss_pred cEEEEEEeCCCCCCCcc--c--cHHHHH----HHHHH---hCCeEEEEeCCCCCCHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRV--V--TLERHA----KLAQS---LHLHSFAVSARTGDNCWVNTRTPEI 117 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~--~--~~~~~~----~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (158)
+|+.+|.||||....-. - ....+. .+.+. ...+++.+|+.++.|+++|..-+..
T Consensus 249 VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~Pw~~~Ssvt~~Grd~Ll~~i~q 313 (320)
T KOG2486|consen 249 VPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLPWIYVSSVTSLGRDLLLLHIAQ 313 (320)
T ss_pred CCeEEeeehhhhhhhccccccCccccceeehhhccccceeccCCceeeecccccCceeeeeehhh
Confidence 99999999999632110 0 001111 11111 1245678999999999887765544
No 318
>PTZ00258 GTP-binding protein; Provisional
Probab=95.76 E-value=0.081 Score=42.50 Aligned_cols=43 Identities=12% Similarity=0.044 Sum_probs=27.8
Q ss_pred CcEEEEEEeCC--CC-CCCccccHHHHHHHHHHh-CCeEEEEeCCCCC
Q psy2600 63 PTYVALVANKG--DM-EHQRVVTLERHAKLAQSL-HLHSFAVSARTGD 106 (158)
Q Consensus 63 ~~piilv~nK~--Dl-~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~ 106 (158)
.+|+++|+|+. |+ ..... .......++... +..++.+||+...
T Consensus 220 ~KP~iyv~N~~E~D~~~~~~~-~~~~l~~~~~~~~~~~~v~~sa~~E~ 266 (390)
T PTZ00258 220 AKPMIYLVNMSEKDFIRQKNK-WLAKIKEWVGEKGGGPIIPYSAEFEE 266 (390)
T ss_pred cCCEEEEEECchhhhcccchH-HHHHHHHHHHhcCCCeEEEeeHHHHH
Confidence 38999999999 76 22211 223444555555 4778999986554
No 319
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=95.59 E-value=0.092 Score=42.46 Aligned_cols=84 Identities=13% Similarity=0.035 Sum_probs=53.7
Q ss_pred CCeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh---CCeEEEEe
Q psy2600 28 CGKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL---HLHSFAVS 101 (158)
Q Consensus 28 vgk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~---~~~~~~~S 101 (158)
.-+.+++|.+.++ .++.+.+ .-+..... .-.++|.+|+|..+...+ .+...+..... ..++|.+|
T Consensus 73 ~~d~alLvV~~deGl~~qtgEhL----~iLdllgi----~~giivltk~D~~d~~r~-e~~i~~Il~~l~l~~~~i~~~s 143 (447)
T COG3276 73 GIDYALLVVAADEGLMAQTGEHL----LILDLLGI----KNGIIVLTKADRVDEARI-EQKIKQILADLSLANAKIFKTS 143 (447)
T ss_pred CCceEEEEEeCccCcchhhHHHH----HHHHhcCC----CceEEEEeccccccHHHH-HHHHHHHHhhcccccccccccc
Confidence 3466999999864 3343332 22332221 346999999998653322 12222232222 35679999
Q ss_pred CCCCCCHHHHHHHHHHHHH
Q psy2600 102 ARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~~~~ 120 (158)
+.+|.||++|.+.|.+...
T Consensus 144 ~~~g~GI~~Lk~~l~~L~~ 162 (447)
T COG3276 144 AKTGRGIEELKNELIDLLE 162 (447)
T ss_pred cccCCCHHHHHHHHHHhhh
Confidence 9999999999999999884
No 320
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=95.51 E-value=0.075 Score=43.51 Aligned_cols=88 Identities=18% Similarity=0.027 Sum_probs=54.1
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc--ccHHHHHHHH------HHhCCeEEEEe
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV--VTLERHAKLA------QSLHLHSFAVS 101 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~------~~~~~~~~~~S 101 (158)
|+++++.|+.+. ..-+.+--+....+.. .+-|+|.||+|.+..+. +-++...-|. ++++++++..|
T Consensus 93 DgvlLlVDA~EG-pMPQTrFVlkKAl~~g-----L~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQLdFPivYAS 166 (603)
T COG1217 93 DGVLLLVDASEG-PMPQTRFVLKKALALG-----LKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQLDFPIVYAS 166 (603)
T ss_pred ceEEEEEEcccC-CCCchhhhHHHHHHcC-----CCcEEEEeCCCCCCCCHHHHHHHHHHHHHHhCCChhhCCCcEEEee
Confidence 569999998752 2222222222333333 44588999999875332 2222222232 24567889999
Q ss_pred CCCCC----------CHHHHHHHHHHHHHHhH
Q psy2600 102 ARTGD----------NCWVNTRTPEINPLKYL 123 (158)
Q Consensus 102 a~~~~----------~i~~lf~~l~~~~~~~~ 123 (158)
++.|. +..-||+.|++.++...
T Consensus 167 ~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~ 198 (603)
T COG1217 167 ARNGTASLDPEDEADDMAPLFETILDHVPAPK 198 (603)
T ss_pred ccCceeccCccccccchhHHHHHHHHhCCCCC
Confidence 99873 57889999998887664
No 321
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=95.48 E-value=0.077 Score=38.85 Aligned_cols=14 Identities=43% Similarity=0.840 Sum_probs=12.3
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
++|+++|..|+|||
T Consensus 1 l~IlllG~tGsGKS 14 (212)
T PF04548_consen 1 LRILLLGKTGSGKS 14 (212)
T ss_dssp EEEEEECSTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 47899999999998
No 322
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=95.31 E-value=0.12 Score=41.25 Aligned_cols=76 Identities=14% Similarity=-0.028 Sum_probs=36.7
Q ss_pred HHhhHHHHHH-HHhhhcCCCCCcEEEEEEeCCCCC-------CCccccHHH----HHHH-HHH---hC---CeEEEEeCC
Q psy2600 43 SFHSIPTWVD-LFHLNRKSSTPTYVALVANKGDME-------HQRVVTLER----HAKL-AQS---LH---LHSFAVSAR 103 (158)
Q Consensus 43 s~~~~~~~~~-~~~~~~~~~~~~piilv~nK~Dl~-------~~~~~~~~~----~~~~-~~~---~~---~~~~~~Sa~ 103 (158)
.|.....|+. .+.+.. +++.+|-+|+|.. ..+....++ .++. .+. .| ..+|-+|+.
T Consensus 125 rf~~ndv~La~~i~~~g-----K~fyfVRTKvD~Dl~~~~~~~p~~f~~e~~L~~IR~~c~~~L~k~gv~~P~VFLVS~~ 199 (376)
T PF05049_consen 125 RFTENDVQLAKEIQRMG-----KKFYFVRTKVDSDLYNERRRKPRTFNEEKLLQEIRENCLENLQKAGVSEPQVFLVSSF 199 (376)
T ss_dssp S--HHHHHHHHHHHHTT------EEEEEE--HHHHHHHHHCC-STT--HHTHHHHHHHHHHHHHHCTT-SS--EEEB-TT
T ss_pred CCchhhHHHHHHHHHcC-----CcEEEEEecccccHhhhhccCCcccCHHHHHHHHHHHHHHHHHHcCCCcCceEEEeCC
Confidence 3544444443 344444 8999999999951 111222222 2221 222 23 258899998
Q ss_pred CC--CCHHHHHHHHHHHHHHhH
Q psy2600 104 TG--DNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 104 ~~--~~i~~lf~~l~~~~~~~~ 123 (158)
+- .+...|.+.+.+.+....
T Consensus 200 dl~~yDFp~L~~tL~~dLp~~K 221 (376)
T PF05049_consen 200 DLSKYDFPKLEETLEKDLPAHK 221 (376)
T ss_dssp TTTSTTHHHHHHHHHHHS-GGG
T ss_pred CcccCChHHHHHHHHHHhHHHH
Confidence 74 457788888888776543
No 323
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.27 E-value=0.19 Score=38.86 Aligned_cols=94 Identities=14% Similarity=0.048 Sum_probs=52.7
Q ss_pred EEEEECCCCCCeE----------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHHH
Q psy2600 19 KVVLLGDPSCGKI----------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLERH 86 (158)
Q Consensus 19 ki~~~G~~~vgk~----------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~ 86 (158)
-++++--.|+|.+ +++|.-+.--+. +.-...-+-+ +-=++|.||.|....... ....+
T Consensus 145 DvIIVETVGvGQsev~I~~~aDt~~~v~~pg~GD~---~Q~iK~GimE-------iaDi~vINKaD~~~A~~a~r~l~~a 214 (323)
T COG1703 145 DVIIVETVGVGQSEVDIANMADTFLVVMIPGAGDD---LQGIKAGIME-------IADIIVINKADRKGAEKAARELRSA 214 (323)
T ss_pred CEEEEEecCCCcchhHHhhhcceEEEEecCCCCcH---HHHHHhhhhh-------hhheeeEeccChhhHHHHHHHHHHH
Confidence 4566666676655 555553332233 3222222222 344899999996432110 00011
Q ss_pred HHHHH----H--hCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 87 AKLAQ----S--LHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 87 ~~~~~----~--~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
..+.. . |..+++.|||..|+||.+|++.+.+.....
T Consensus 215 l~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~ 256 (323)
T COG1703 215 LDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFL 256 (323)
T ss_pred HHhhcccccccCCCCceeEeeeccCCCHHHHHHHHHHHHHHH
Confidence 11111 1 224589999999999999999998776544
No 324
>KOG0410|consensus
Probab=95.11 E-value=0.017 Score=45.06 Aligned_cols=80 Identities=20% Similarity=0.143 Sum_probs=51.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCC--CcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSST--PTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
++-|-|++.|..-++...-+.-+++..-... -..++=|-||+|...... . .+.++ .+.+||.+|.|.+
T Consensus 261 llHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~-e-------~E~n~--~v~isaltgdgl~ 330 (410)
T KOG0410|consen 261 LLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEV-E-------EEKNL--DVGISALTGDGLE 330 (410)
T ss_pred EEEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccccC-c-------cccCC--ccccccccCccHH
Confidence 8899999998776666655555554442110 022556778888643211 1 12222 5688999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++...+-.....
T Consensus 331 el~~a~~~kv~~ 342 (410)
T KOG0410|consen 331 ELLKAEETKVAS 342 (410)
T ss_pred HHHHHHHHHhhh
Confidence 999887766554
No 325
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=95.02 E-value=0.048 Score=41.88 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=28.6
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc--HHHHHHHHHHhCCeEEEE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT--LERHAKLAQSLHLHSFAV 100 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~ 100 (158)
|||+++++... +..+ .....++... +++|.|..|+|.....++. ......-.+.+++.+|.-
T Consensus 117 cLYfI~pt~~~-L~~~Di~~mk~Ls~~------vNvIPvIaKaD~lt~~el~~~k~~i~~~l~~~~I~~f~f 181 (281)
T PF00735_consen 117 CLYFIPPTGHG-LKPLDIEFMKRLSKR------VNVIPVIAKADTLTPEELQAFKQRIREDLEENNIKIFDF 181 (281)
T ss_dssp EEEEE-TTSSS-S-HHHHHHHHHHTTT------SEEEEEESTGGGS-HHHHHHHHHHHHHHHHHTT--S---
T ss_pred EEEEEcCCCcc-chHHHHHHHHHhccc------ccEEeEEecccccCHHHHHHHHHHHHHHHHHcCceeecc
Confidence 88888876532 2221 1233333322 8899999999975432221 122333344567765553
No 326
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=94.86 E-value=0.12 Score=40.23 Aligned_cols=17 Identities=24% Similarity=0.472 Sum_probs=15.2
Q ss_pred ceEEEEEEECCCCCCeE
Q psy2600 15 EIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 15 ~~~~ki~~~G~~~vgk~ 31 (158)
...++|+++|.+|+|||
T Consensus 36 ~~~~rIllvGktGVGKS 52 (313)
T TIGR00991 36 VSSLTILVMGKGGVGKS 52 (313)
T ss_pred ccceEEEEECCCCCCHH
Confidence 46789999999999998
No 327
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=94.77 E-value=0.15 Score=38.50 Aligned_cols=82 Identities=16% Similarity=0.193 Sum_probs=46.0
Q ss_pred CCcceEEEEEEECCCCCCeE----------------------------------EEEEEECCChhHH--hh--HHHHHHH
Q psy2600 12 DNYEIQLKVVLLGDPSCGKI----------------------------------VIFMYDITSGQSF--HS--IPTWVDL 53 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~vgk~----------------------------------~i~v~d~~~~~s~--~~--~~~~~~~ 53 (158)
+..+..++|+++|.+|+||| -+.++|.-.-... +. ....+..
T Consensus 26 ~~~~~~~~IllvG~tGvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~g~~i~vIDTPGl~~~~~~~~~~~~~~~~ 105 (249)
T cd01853 26 EELDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSS 105 (249)
T ss_pred hhccCCeEEEEECCCCCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEECCeEEEEEECCCcCcchhhHHHHHHHHHH
Confidence 35567889999999999998 3566775332111 11 1223333
Q ss_pred HhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC
Q psy2600 54 FHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH 94 (158)
Q Consensus 54 ~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 94 (158)
+..+.... .+++++..++.|.......+....+.+.+.+|
T Consensus 106 I~~~l~~~-~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG 145 (249)
T cd01853 106 IKRYLKKK-TPDVVLYVDRLDMYRRDYLDLPLLRAITDSFG 145 (249)
T ss_pred HHHHHhcc-CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhC
Confidence 33222110 17789999999975433332233444444444
No 328
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=94.53 E-value=0.27 Score=38.99 Aligned_cols=76 Identities=21% Similarity=0.229 Sum_probs=47.3
Q ss_pred CCCeEEEEEEECCChhHHhhHH--HHHHHHhhhcCCCCCcEEEEEEeCCCCCC-Ccccc---HHHHHHHHHHhCC---eE
Q psy2600 27 SCGKIVIFMYDITSGQSFHSIP--TWVDLFHLNRKSSTPTYVALVANKGDMEH-QRVVT---LERHAKLAQSLHL---HS 97 (158)
Q Consensus 27 ~vgk~~i~v~d~~~~~s~~~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~~~---~~~~~~~~~~~~~---~~ 97 (158)
+.++.+|++.|+-. .-+++.+ .++..+... ..+++..||.||.. +++.- ..+...+++++++ .+
T Consensus 108 STadlAIlLVDAR~-Gvl~QTrRHs~I~sLLGI------rhvvvAVNKmDLvdy~e~~F~~I~~dy~~fa~~L~~~~~~~ 180 (431)
T COG2895 108 STADLAILLVDARK-GVLEQTRRHSFIASLLGI------RHVVVAVNKMDLVDYSEEVFEAIVADYLAFAAQLGLKDVRF 180 (431)
T ss_pred ccccEEEEEEecch-hhHHHhHHHHHHHHHhCC------cEEEEEEeeecccccCHHHHHHHHHHHHHHHHHcCCCcceE
Confidence 35577999999732 2233322 233333321 56899999999974 22211 1234557777774 58
Q ss_pred EEEeCCCCCCHH
Q psy2600 98 FAVSARTGDNCW 109 (158)
Q Consensus 98 ~~~Sa~~~~~i~ 109 (158)
+.+||..|.||-
T Consensus 181 IPiSAl~GDNV~ 192 (431)
T COG2895 181 IPISALLGDNVV 192 (431)
T ss_pred EechhccCCccc
Confidence 999999998864
No 329
>KOG2423|consensus
Probab=94.23 E-value=0.3 Score=39.42 Aligned_cols=86 Identities=13% Similarity=0.041 Sum_probs=51.6
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
.|.+|-|.|+-|+....- ...-..++...+ +..+|+|.|||||.. ..++......+.+.+..--|..|..+..|=
T Consensus 214 SDVvvqVlDARDPmGTrc-~~ve~ylkke~p---hKHli~vLNKvDLVP-twvt~~Wv~~lSkeyPTiAfHAsi~nsfGK 288 (572)
T KOG2423|consen 214 SDVVVQVLDARDPMGTRC-KHVEEYLKKEKP---HKHLIYVLNKVDLVP-TWVTAKWVRHLSKEYPTIAFHASINNSFGK 288 (572)
T ss_pred cceeEEeeeccCCccccc-HHHHHHHhhcCC---cceeEEEeecccccc-HHHHHHHHHHHhhhCcceeeehhhcCccch
Confidence 355999999988643221 122222222222 277999999999964 234455566666666655578887777775
Q ss_pred HHHHHHHHHHH
Q psy2600 109 WVNTRTPEINP 119 (158)
Q Consensus 109 ~~lf~~l~~~~ 119 (158)
..+++.+-+..
T Consensus 289 galI~llRQf~ 299 (572)
T KOG2423|consen 289 GALIQLLRQFA 299 (572)
T ss_pred hHHHHHHHHHH
Confidence 55555544443
No 330
>PRK09602 translation-associated GTPase; Reviewed
Probab=94.16 E-value=0.095 Score=42.21 Aligned_cols=52 Identities=15% Similarity=0.010 Sum_probs=35.4
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH-HHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV-NTRTPEINP 119 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~-lf~~l~~~~ 119 (158)
+|+++|+||+|+.... .....+.+..+..++.+||..+.++.+ +.+.+++.+
T Consensus 218 KPvI~VlNK~D~~~~~----~~l~~i~~~~~~~vvpISA~~e~~l~~~l~~~i~~~l 270 (396)
T PRK09602 218 KPMVIAANKADLPPAE----ENIERLKEEKYYIVVPTSAEAELALRRAAKAGLIDYI 270 (396)
T ss_pred CCEEEEEEchhcccch----HHHHHHHhcCCCcEEEEcchhhhhHHHHHHHhHHhhC
Confidence 8999999999975321 112222222345689999999999988 666665554
No 331
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=93.88 E-value=0.11 Score=45.10 Aligned_cols=43 Identities=14% Similarity=-0.070 Sum_probs=25.9
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
.+|++|+|+|..+.-..+....|.. +.... +|.++++||+|..
T Consensus 109 ~aD~~llVvda~~g~~~~t~~~~~~-~~~~~-----~p~ivviNKiD~~ 151 (720)
T TIGR00490 109 AVDGAIVVVCAVEGVMPQTETVLRQ-ALKEN-----VKPVLFINKVDRL 151 (720)
T ss_pred hcCEEEEEEecCCCCCccHHHHHHH-HHHcC-----CCEEEEEEChhcc
Confidence 3456999999876322222222322 22222 6778999999974
No 332
>KOG1424|consensus
Probab=93.38 E-value=0.17 Score=41.78 Aligned_cols=64 Identities=23% Similarity=0.251 Sum_probs=41.9
Q ss_pred eEEEEEEECCChhHHhh--HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH---HhCCeEEEEeCCC
Q psy2600 30 KIVIFMYDITSGQSFHS--IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ---SLHLHSFAVSART 104 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~---~~~~~~~~~Sa~~ 104 (158)
|.+|.+.|+-++--|.. +..++.+.. .. +-.+|+.||+||.. .+....|++ +.++.+++-||..
T Consensus 176 DivvqIVDARnPllfr~~dLe~Yvke~d---~~---K~~~LLvNKaDLl~-----~~qr~aWa~YF~~~ni~~vf~SA~~ 244 (562)
T KOG1424|consen 176 DIVVQIVDARNPLLFRSPDLEDYVKEVD---PS---KANVLLVNKADLLP-----PEQRVAWAEYFRQNNIPVVFFSALA 244 (562)
T ss_pred ceEEEEeecCCccccCChhHHHHHhccc---cc---cceEEEEehhhcCC-----HHHHHHHHHHHHhcCceEEEEeccc
Confidence 56888899888755543 233444332 22 56799999999964 334445544 4468888888876
No 333
>KOG0466|consensus
Probab=93.27 E-value=0.065 Score=41.70 Aligned_cols=60 Identities=17% Similarity=-0.003 Sum_probs=44.4
Q ss_pred cEEEEEEeCCCCCCCcc--ccHHHHHHHHHH---hCCeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 64 TYVALVANKGDMEHQRV--VTLERHAKLAQS---LHLHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
..++++-||+||....+ ...++...|.+. -+.+++.+||.-+.||+.+.+.+++.++...
T Consensus 180 khiiilQNKiDli~e~~A~eq~e~I~kFi~~t~ae~aPiiPisAQlkyNId~v~eyivkkIPvPv 244 (466)
T KOG0466|consen 180 KHIIILQNKIDLIKESQALEQHEQIQKFIQGTVAEGAPIIPISAQLKYNIDVVCEYIVKKIPVPV 244 (466)
T ss_pred ceEEEEechhhhhhHHHHHHHHHHHHHHHhccccCCCceeeehhhhccChHHHHHHHHhcCCCCc
Confidence 67899999999864222 123334445443 2568999999999999999999999987654
No 334
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=92.84 E-value=0.59 Score=37.45 Aligned_cols=102 Identities=14% Similarity=0.111 Sum_probs=58.5
Q ss_pred ceEEEEEEECCCCCC-----------eEEEEEEECCC----------hhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeC
Q psy2600 15 EIQLKVVLLGDPSCG-----------KIVIFMYDITS----------GQSFHSIPTWVDLFHLN-RKSSTPTYVALVANK 72 (158)
Q Consensus 15 ~~~~ki~~~G~~~vg-----------k~~i~v~d~~~----------~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK 72 (158)
...++++.+|+.+.. +++|||.++++ ...+.+.....+.+... .-.+ .|++|+.||
T Consensus 235 ~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~~i~~~~~~~~--~~iil~lnK 312 (389)
T PF00503_consen 235 SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFESICNNPWFKN--TPIILFLNK 312 (389)
T ss_dssp TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHHHHHTSGGGTT--SEEEEEEE-
T ss_pred ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHHHHHhCccccc--CceEEeeec
Confidence 346799999999833 57999999764 12233333444444421 1122 999999999
Q ss_pred CCCC-----CCc-----------c--ccHHHHHHHHHH--------h----CCeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 73 GDME-----HQR-----------V--VTLERHAKLAQS--------L----HLHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 73 ~Dl~-----~~~-----------~--~~~~~~~~~~~~--------~----~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
.|+. ... . -+.+.+..+... . .+-+..|+|.+..++..+|..+.+.
T Consensus 313 ~D~f~~Kl~~~~~l~~~fp~y~g~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~h~t~a~d~~~~~~v~~~v~~~ 388 (389)
T PF00503_consen 313 IDLFEEKLKKGPKLSKYFPDYTGDRPNDVDSAIKFIKNKFLRLNRNNSPSRRIYVHFTCATDTENIRKVFNAVKDI 388 (389)
T ss_dssp HHHHHHHTTTSSCGGGTSTTGGSH-TSSHHHHHHHHHHHHHCTHSTTTTCS-EEEEEESTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHccCCCchHhhCCCCCCCcccCHHHHHHHHHHHHHHhccCCCCCcceEEEEeeecccHHHHHHHHHhcCc
Confidence 9962 110 0 122334443331 1 1124567777777888888877654
No 335
>KOG0780|consensus
Probab=92.72 E-value=0.9 Score=36.62 Aligned_cols=89 Identities=9% Similarity=0.016 Sum_probs=60.5
Q ss_pred EEEECCCCCCeE-----------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc
Q psy2600 20 VVLLGDPSCGKI-----------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT 82 (158)
Q Consensus 20 i~~~G~~~vgk~-----------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~ 82 (158)
|.++|-.|+||+ +++|-|.=....|+++..|....+ +|+..-++++|-. .+.
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagAfDQLkqnA~k~~--------iP~ygsyte~dpv---~ia 172 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGAFDQLKQNATKAR--------VPFYGSYTEADPV---KIA 172 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccchHHHHHHHhHhhC--------CeeEecccccchH---HHH
Confidence 789999999998 888888777778888877776664 9999888888832 122
Q ss_pred HHHHHHHHHHhCCe--EEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 83 LERHAKLAQSLHLH--SFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 83 ~~~~~~~~~~~~~~--~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
.++-.-.++.+++ ++.||-+..+. ..||+.+.+....
T Consensus 173 -~egv~~fKke~fdvIIvDTSGRh~qe-~sLfeEM~~v~~a 211 (483)
T KOG0780|consen 173 -SEGVDRFKKENFDVIIVDTSGRHKQE-ASLFEEMKQVSKA 211 (483)
T ss_pred -HHHHHHHHhcCCcEEEEeCCCchhhh-HHHHHHHHHHHhh
Confidence 2333333344444 45666666655 5688877765443
No 336
>KOG0458|consensus
Probab=92.53 E-value=1.5 Score=36.97 Aligned_cols=75 Identities=16% Similarity=0.157 Sum_probs=43.1
Q ss_pred EEEEEECCChhHHhh-------HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHH----HHHH-HHhC-----
Q psy2600 32 VIFMYDITSGQSFHS-------IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH----AKLA-QSLH----- 94 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~-------~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~----~~~~-~~~~----- 94 (158)
+++|.|.+. ..|+. .+.....++..+- .-++++.||.|+..=.+-..+++ ..|. +..|
T Consensus 282 avLvvd~s~-~~FE~gfd~~gQtrEha~llr~Lgi----~qlivaiNKmD~V~Wsq~RF~eIk~~l~~fL~~~~gf~es~ 356 (603)
T KOG0458|consen 282 AVLVVDAST-GEFESGFDPGGQTREHALLLRSLGI----SQLIVAINKMDLVSWSQDRFEEIKNKLSSFLKESCGFKESS 356 (603)
T ss_pred EEEEEECCc-chhhhccCCCCchHHHHHHHHHcCc----ceEEEEeecccccCccHHHHHHHHHHHHHHHHHhcCcccCC
Confidence 999999864 33333 3333333333332 56899999999863111111121 1222 3333
Q ss_pred CeEEEEeCCCCCCHHHH
Q psy2600 95 LHSFAVSARTGDNCWVN 111 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~l 111 (158)
+.|+.||+..|+|+...
T Consensus 357 v~FIPiSGl~GeNL~k~ 373 (603)
T KOG0458|consen 357 VKFIPISGLSGENLIKI 373 (603)
T ss_pred cceEecccccCCccccc
Confidence 46999999999996544
No 337
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=92.43 E-value=0.47 Score=43.46 Aligned_cols=43 Identities=16% Similarity=0.099 Sum_probs=27.2
Q ss_pred EEEEEECCChh-----HH----hhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQ-----SF----HSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 32 ~i~v~d~~~~~-----s~----~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
+|+++|+.+.- .. ..++..+.++.+.-.-. .|+.+|.+|||+.
T Consensus 205 vil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg~~--~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 205 VVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGAR--FPVYLVLTKADLL 256 (1169)
T ss_pred EEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhCCC--CCEEEEEecchhh
Confidence 88999876521 11 12344555555332323 9999999999975
No 338
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=92.10 E-value=1.4 Score=30.91 Aligned_cols=63 Identities=16% Similarity=0.189 Sum_probs=42.7
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFA 99 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 99 (158)
..|.++++...+ ..+......+++.++... .++.+|.||+|.... ...+..++.+.+|++++.
T Consensus 114 ~aD~vliv~~~~-~~~~~~~~~~~~~l~~~~-----~~~~vV~N~~~~~~~---~~~~~~~~~~~~~~~vl~ 176 (179)
T cd03110 114 GADAALLVTEPT-PSGLHDLERAVELVRHFG-----IPVGVVINKYDLNDE---IAEEIEDYCEEEGIPILG 176 (179)
T ss_pred cCCEEEEEecCC-cccHHHHHHHHHHHHHcC-----CCEEEEEeCCCCCcc---hHHHHHHHHHHcCCCeEE
Confidence 346688888776 446666777777666543 678899999996432 234566777777877653
No 339
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=92.04 E-value=1.5 Score=37.22 Aligned_cols=98 Identities=16% Similarity=0.171 Sum_probs=63.1
Q ss_pred ccccccccCCCCcceEEEEEEECCCCCCeE--------------------------------------------------
Q psy2600 2 LEVKMLNLHNDNYEIQLKVVLLGDPSCGKI-------------------------------------------------- 31 (158)
Q Consensus 2 ~~~~~~~~~~~~~~~~~ki~~~G~~~vgk~-------------------------------------------------- 31 (158)
+++.|+.+..+....-+=++++|.+|+||+
T Consensus 54 lhVPmvdrtp~d~PPPfIvavvGPpGtGKsTLirSlVrr~tk~ti~~i~GPiTvvsgK~RRiTflEcp~Dl~~miDvaKI 133 (1077)
T COG5192 54 LHVPMVDRTPKDLPPPFIVAVVGPPGTGKSTLIRSLVRRFTKQTIDEIRGPITVVSGKTRRITFLECPSDLHQMIDVAKI 133 (1077)
T ss_pred cccccccCCcccCCCCeEEEeecCCCCChhHHHHHHHHHHHHhhhhccCCceEEeecceeEEEEEeChHHHHHHHhHHHh
Confidence 578888888777778888899999999998
Q ss_pred ---EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHH-----HHHHHHh-CCeEEEEe
Q psy2600 32 ---VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH-----AKLAQSL-HLHSFAVS 101 (158)
Q Consensus 32 ---~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-----~~~~~~~-~~~~~~~S 101 (158)
+++++|.+- .|+-. ..+++-+..... +.++-|++..|+......-.... +-|.+-+ |..+|..|
T Consensus 134 aDLVlLlIdgnf--GfEMETmEFLnil~~HGm----PrvlgV~ThlDlfk~~stLr~~KKrlkhRfWtEiyqGaKlFyls 207 (1077)
T COG5192 134 ADLVLLLIDGNF--GFEMETMEFLNILISHGM----PRVLGVVTHLDLFKNPSTLRSIKKRLKHRFWTEIYQGAKLFYLS 207 (1077)
T ss_pred hheeEEEecccc--CceehHHHHHHHHhhcCC----CceEEEEeecccccChHHHHHHHHHHhhhHHHHHcCCceEEEec
Confidence 667776543 34443 245555555542 44888999999965332111111 1122322 67788888
Q ss_pred CCCC
Q psy2600 102 ARTG 105 (158)
Q Consensus 102 a~~~ 105 (158)
-..+
T Consensus 208 gV~n 211 (1077)
T COG5192 208 GVEN 211 (1077)
T ss_pred cccc
Confidence 7654
No 340
>PRK14974 cell division protein FtsY; Provisional
Probab=92.03 E-value=1.2 Score=35.21 Aligned_cols=41 Identities=10% Similarity=0.002 Sum_probs=22.7
Q ss_pred EEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Q psy2600 67 ALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 67 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~ 113 (158)
-+|.||.|.... .-.+..++...+.++..++ +|++++++..
T Consensus 283 giIlTKlD~~~~----~G~~ls~~~~~~~Pi~~i~--~Gq~v~Dl~~ 323 (336)
T PRK14974 283 GVILTKVDADAK----GGAALSIAYVIGKPILFLG--VGQGYDDLIP 323 (336)
T ss_pred EEEEeeecCCCC----ccHHHHHHHHHCcCEEEEe--CCCChhhccc
Confidence 556677775321 1233444445566766665 5777766544
No 341
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=91.90 E-value=1.4 Score=34.49 Aligned_cols=42 Identities=12% Similarity=-0.016 Sum_probs=24.9
Q ss_pred EEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Q psy2600 66 VALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 66 iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~ 113 (158)
.-+|.||.|.... .-.+..++...++++..++ +|++++++-.
T Consensus 262 ~giIlTKlD~t~~----~G~~l~~~~~~~~Pi~~v~--~Gq~~~Dl~~ 303 (318)
T PRK10416 262 TGIILTKLDGTAK----GGVVFAIADELGIPIKFIG--VGEGIDDLQP 303 (318)
T ss_pred CEEEEECCCCCCC----ccHHHHHHHHHCCCEEEEe--CCCChhhCcc
Confidence 3567778774321 2244555566677777776 6777665543
No 342
>PRK07560 elongation factor EF-2; Reviewed
Probab=91.75 E-value=0.84 Score=39.75 Aligned_cols=43 Identities=19% Similarity=0.024 Sum_probs=27.2
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
.+|++|+|+|....-.-.....|.. ..... .|.+++.||+|+.
T Consensus 110 ~~D~avlVvda~~g~~~~t~~~~~~-~~~~~-----~~~iv~iNK~D~~ 152 (731)
T PRK07560 110 AVDGAIVVVDAVEGVMPQTETVLRQ-ALRER-----VKPVLFINKVDRL 152 (731)
T ss_pred hcCEEEEEEECCCCCCccHHHHHHH-HHHcC-----CCeEEEEECchhh
Confidence 4577999999876433222233332 23222 6779999999975
No 343
>PF09547 Spore_IV_A: Stage IV sporulation protein A (spore_IV_A); InterPro: IPR014201 This entry is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=91.36 E-value=3.8 Score=33.61 Aligned_cols=69 Identities=7% Similarity=0.002 Sum_probs=45.2
Q ss_pred hhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCC--CCHHHHHHHHH
Q psy2600 41 GQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTG--DNCWVNTRTPE 116 (158)
Q Consensus 41 ~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~--~~i~~lf~~l~ 116 (158)
++++... ..-++++++.. +|++++.|-.+-... .+.+-+..+.++++.+++.++|..- ..|..++..++
T Consensus 162 Re~Y~eAEervI~ELk~ig-----KPFvillNs~~P~s~--et~~L~~eL~ekY~vpVlpvnc~~l~~~DI~~Il~~vL 233 (492)
T PF09547_consen 162 RENYVEAEERVIEELKEIG-----KPFVILLNSTKPYSE--ETQELAEELEEKYDVPVLPVNCEQLREEDITRILEEVL 233 (492)
T ss_pred hHHHHHHHHHHHHHHHHhC-----CCEEEEEeCCCCCCH--HHHHHHHHHHHHhCCcEEEeehHHcCHHHHHHHHHHHH
Confidence 3455444 46777887766 999999999884332 2345567788889999988887643 23444444433
No 344
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=91.19 E-value=0.65 Score=34.88 Aligned_cols=41 Identities=7% Similarity=-0.061 Sum_probs=22.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
+++|.|.+..-.-++...+...+... . .++++|.||+|...
T Consensus 166 IL~Vvda~~d~~~~d~l~ia~~ld~~---~--~rti~ViTK~D~~~ 206 (240)
T smart00053 166 ILAVTPANVDLANSDALKLAKEVDPQ---G--ERTIGVITKLDLMD 206 (240)
T ss_pred EEEEEECCCCCCchhHHHHHHHHHHc---C--CcEEEEEECCCCCC
Confidence 67777764321111222333333322 2 78999999999764
No 345
>KOG0463|consensus
Probab=91.07 E-value=2.2 Score=34.48 Aligned_cols=19 Identities=26% Similarity=0.559 Sum_probs=16.0
Q ss_pred Ccc-eEEEEEEECCCCCCeE
Q psy2600 13 NYE-IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 13 ~~~-~~~ki~~~G~~~vgk~ 31 (158)
..| +.+++.++|+.-.||+
T Consensus 128 ~~DF~E~RVAVVGNVDAGKS 147 (641)
T KOG0463|consen 128 EKDFIEARVAVVGNVDAGKS 147 (641)
T ss_pred CccceeEEEEEEecccCCcc
Confidence 344 6789999999999998
No 346
>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases. All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.
Probab=90.90 E-value=4.4 Score=28.78 Aligned_cols=67 Identities=13% Similarity=0.083 Sum_probs=46.4
Q ss_pred HhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHH
Q psy2600 44 FHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTP 115 (158)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l 115 (158)
..++..|++++++.... .-+++|-|-.-... .....+++.+.+.+|++++.-+++.-.+..++...+
T Consensus 61 ~~~~~~~~~~l~~~~~~---~~v~IvSNsaGs~~--d~~~~~a~~~~~~lgIpvl~h~~kKP~~~~~i~~~~ 127 (168)
T PF09419_consen 61 PPEYAEWLNELKKQFGK---DRVLIVSNSAGSSD--DPDGERAEALEKALGIPVLRHRAKKPGCFREILKYF 127 (168)
T ss_pred CHHHHHHHHHHHHHCCC---CeEEEEECCCCccc--CccHHHHHHHHHhhCCcEEEeCCCCCccHHHHHHHH
Confidence 34567899999865432 24788888764322 234678889999999999888887776666555544
No 347
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=90.71 E-value=4 Score=33.12 Aligned_cols=26 Identities=19% Similarity=-0.003 Sum_probs=18.0
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
.++|.+|+.+|.|++-| ..+...++.
T Consensus 314 vPi~~tSsVTg~GldlL-~e~f~~Lp~ 339 (527)
T COG5258 314 VPIFYTSSVTGEGLDLL-DEFFLLLPK 339 (527)
T ss_pred EEEEEEecccCccHHHH-HHHHHhCCc
Confidence 46899999999997644 444444443
No 348
>KOG4273|consensus
Probab=90.66 E-value=0.41 Score=36.34 Aligned_cols=41 Identities=15% Similarity=0.390 Sum_probs=31.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
+++|||.+....+..+..|+.-..-+.- -.++.+|||+|..
T Consensus 82 ~vmvfdlse~s~l~alqdwl~htdinsf----dillcignkvdrv 122 (418)
T KOG4273|consen 82 FVMVFDLSEKSGLDALQDWLPHTDINSF----DILLCIGNKVDRV 122 (418)
T ss_pred EEEEEeccchhhhHHHHhhccccccccc----hhheecccccccc
Confidence 8999999998889999999875442221 2357789999964
No 349
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=90.28 E-value=0.71 Score=39.81 Aligned_cols=22 Identities=27% Similarity=0.582 Sum_probs=18.6
Q ss_pred CCCCcceEEEEEEECCCCCCeE
Q psy2600 10 HNDNYEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 10 ~~~~~~~~~ki~~~G~~~vgk~ 31 (158)
+.+.-++.+.|+++|.+|+|||
T Consensus 111 g~~~LdfslrIvLVGKTGVGKS 132 (763)
T TIGR00993 111 GQDPLDFSLNILVLGKSGVGKS 132 (763)
T ss_pred hccccCcceEEEEECCCCCCHH
Confidence 3455678899999999999998
No 350
>KOG1547|consensus
Probab=89.57 E-value=3.4 Score=31.36 Aligned_cols=18 Identities=17% Similarity=0.466 Sum_probs=14.4
Q ss_pred cceEEEEEEECCCCCCeE
Q psy2600 14 YEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 14 ~~~~~ki~~~G~~~vgk~ 31 (158)
..|.|.|+++|.++.||+
T Consensus 43 ~GF~FNIMVVgqSglgks 60 (336)
T KOG1547|consen 43 TGFDFNIMVVGQSGLGKS 60 (336)
T ss_pred ccCceEEEEEecCCCCch
Confidence 457788888888888887
No 351
>KOG0082|consensus
Probab=89.43 E-value=7.4 Score=31.00 Aligned_cols=106 Identities=16% Similarity=0.112 Sum_probs=62.5
Q ss_pred eEEEEEEECCCCCC-----------eEEEEEEECCCh--hHHhh--------HHHHHHHHhhhc-CCCCCcEEEEEEeCC
Q psy2600 16 IQLKVVLLGDPSCG-----------KIVIFMYDITSG--QSFHS--------IPTWVDLFHLNR-KSSTPTYVALVANKG 73 (158)
Q Consensus 16 ~~~ki~~~G~~~vg-----------k~~i~v~d~~~~--~s~~~--------~~~~~~~~~~~~-~~~~~~piilv~nK~ 73 (158)
..++++.+|..+.. +++|||.++++= ..+++ -....+.+.+.. -.+ .++||..||.
T Consensus 195 ~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~sI~n~~~F~~--tsiiLFLNK~ 272 (354)
T KOG0082|consen 195 LKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFESICNNKWFAN--TSIILFLNKK 272 (354)
T ss_pred CceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHHHHhcCccccc--CcEEEEeecH
Confidence 56789999988732 568999988751 11111 122333333211 123 8999999999
Q ss_pred CCCCC---------------ccccHHHHHHHHHH--------h--CCeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 74 DMEHQ---------------RVVTLERHAKLAQS--------L--HLHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 74 Dl~~~---------------~~~~~~~~~~~~~~--------~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
||-.+ ...+.+++..+.+. . .+=...+.|.+-.+|..+|+++.+.+....
T Consensus 273 DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~~k~iy~h~T~AtDT~nv~~vf~av~d~Ii~~n 347 (354)
T KOG0082|consen 273 DLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNKDKKIYVHFTCATDTQNVQFVFDAVTDTIIQNN 347 (354)
T ss_pred HHHHHHhccCchhhhCcCCCCCCChHHHHHHHHHHHHHHhcccCCcceEEEEeeccHHHHHHHHHHHHHHHHHHH
Confidence 98210 00123344333321 1 111345678888899999999998887654
No 352
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=89.42 E-value=0.59 Score=41.37 Aligned_cols=43 Identities=16% Similarity=0.038 Sum_probs=29.7
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
+.|++|+|.|++..-.......|.. +.... +|++++.||+|..
T Consensus 121 ~~D~ailVvda~~Gv~~~t~~~~~~-~~~~~-----~p~i~~iNK~D~~ 163 (843)
T PLN00116 121 ITDGALVVVDCIEGVCVQTETVLRQ-ALGER-----IRPVLTVNKMDRC 163 (843)
T ss_pred hcCEEEEEEECCCCCcccHHHHHHH-HHHCC-----CCEEEEEECCccc
Confidence 6678999999886544333333433 33333 8999999999975
No 353
>KOG0468|consensus
Probab=89.29 E-value=0.91 Score=39.07 Aligned_cols=38 Identities=24% Similarity=0.311 Sum_probs=26.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
+++++|+...-.+...+-+...+ +++ .|+++|.||+|.
T Consensus 224 vVlvvDv~EGVmlntEr~ikhai-q~~-----~~i~vviNKiDR 261 (971)
T KOG0468|consen 224 VVLVVDVAEGVMLNTERIIKHAI-QNR-----LPIVVVINKVDR 261 (971)
T ss_pred EEEEEEcccCceeeHHHHHHHHH-hcc-----CcEEEEEehhHH
Confidence 99999998766665433333332 333 899999999995
No 354
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=89.25 E-value=0.57 Score=33.99 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=35.1
Q ss_pred EEEEECCCCCCeE-----------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeC
Q psy2600 19 KVVLLGDPSCGKI-----------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANK 72 (158)
Q Consensus 19 ki~~~G~~~vgk~-----------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK 72 (158)
-++++|..|+||| .++..|.-....++++..|.+.+. +|+..+.+.
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~--------vp~~~~~~~ 65 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILG--------VPFYVARTE 65 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHT--------EEEEESSTT
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhc--------cccchhhcc
Confidence 4789999999998 788888777778888887777765 666654333
No 355
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=89.19 E-value=3.5 Score=34.71 Aligned_cols=71 Identities=10% Similarity=0.016 Sum_probs=47.8
Q ss_pred HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeC--CCCCCHHHHHHHHHHHHH
Q psy2600 43 SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSA--RTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 43 s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa--~~~~~i~~lf~~l~~~~~ 120 (158)
.+.++...++.++++. +|++++.||.|...+.+ .+..++++++.|+.+..+.+ .-|.|-.++-+.+++.+.
T Consensus 357 Gl~NL~RHIenvr~FG-----vPvVVAINKFd~DTe~E--i~~I~~~c~e~Gv~va~~~~~~~Gg~Gai~LA~aVveA~~ 429 (557)
T PRK13505 357 GFANLERHIENIRKFG-----VPVVVAINKFVTDTDAE--IAALKELCEELGVEVALSEVWAKGGEGGVELAEKVVELIE 429 (557)
T ss_pred HHHHHHHHHHHHHHcC-----CCEEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEecccccCCcchHHHHHHHHHHHh
Confidence 4555666777777666 99999999999864332 35678889999987653322 235566666666666554
No 356
>KOG0447|consensus
Probab=89.18 E-value=1.7 Score=36.72 Aligned_cols=66 Identities=20% Similarity=0.208 Sum_probs=39.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHh-hhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-h----CCeEEEEeC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-L----HLHSFAVSA 102 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~----~~~~~~~Sa 102 (158)
+|+|+. ..|.+..+..+..+- +.++.+ ...|+|.+|+|+......++..+++..+- + .+.||.+-.
T Consensus 452 IILCIQ---DGSVDAERSnVTDLVsq~DP~G--rRTIfVLTKVDlAEknlA~PdRI~kIleGKLFPMKALGYfaVVT 523 (980)
T KOG0447|consen 452 IILCIQ---DGSVDAERSIVTDLVSQMDPHG--RRTIFVLTKVDLAEKNVASPSRIQQIIEGKLFPMKALGYFAVVT 523 (980)
T ss_pred EEEEec---cCCcchhhhhHHHHHHhcCCCC--CeeEEEEeecchhhhccCCHHHHHHHHhcCccchhhcceeEEEe
Confidence 566653 234555555555555 445544 77899999999976545556666665442 1 245666533
No 357
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=89.07 E-value=4 Score=31.28 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=41.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEE
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSF 98 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 98 (158)
+|+|-.+| +..+.++...++..+... +|..+|.||.++.. . +.+.+++..|++++
T Consensus 189 ai~VTEPT-p~glhD~kr~~el~~~f~-----ip~~iViNr~~~g~-----s-~ie~~~~e~gi~il 243 (284)
T COG1149 189 AILVTEPT-PFGLHDLKRALELVEHFG-----IPTGIVINRYNLGD-----S-EIEEYCEEEGIPIL 243 (284)
T ss_pred EEEEecCC-ccchhHHHHHHHHHHHhC-----CceEEEEecCCCCc-----h-HHHHHHHHcCCCee
Confidence 77776665 567777878788777776 99999999996532 2 77888888887754
No 358
>KOG2484|consensus
Probab=88.75 E-value=1.2 Score=35.81 Aligned_cols=43 Identities=21% Similarity=0.133 Sum_probs=29.9
Q ss_pred CeEEEEEEECCChhHHhh--HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHS--IPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
.|.+|.|.|+-||.+... .+.|+..... + ..+|+|.||+||..
T Consensus 147 sDVVleVlDARDPlgtR~~~vE~~V~~~~g----n--KkLILVLNK~DLVP 191 (435)
T KOG2484|consen 147 SDVVLEVLDARDPLGTRCPEVEEAVLQAHG----N--KKLILVLNKIDLVP 191 (435)
T ss_pred hheEEEeeeccCCCCCCChhHHHHHHhccC----C--ceEEEEeehhccCC
Confidence 466999999999865443 3444433221 1 67899999999964
No 359
>PTZ00416 elongation factor 2; Provisional
Probab=88.27 E-value=0.67 Score=40.99 Aligned_cols=43 Identities=19% Similarity=0.103 Sum_probs=29.1
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
.+|++|+|+|.++.-..... ..+..+.... +|++++.||+|+.
T Consensus 115 ~~D~ailVvda~~g~~~~t~-~~~~~~~~~~-----~p~iv~iNK~D~~ 157 (836)
T PTZ00416 115 VTDGALVVVDCVEGVCVQTE-TVLRQALQER-----IRPVLFINKVDRA 157 (836)
T ss_pred cCCeEEEEEECCCCcCccHH-HHHHHHHHcC-----CCEEEEEEChhhh
Confidence 56789999998874333322 3334444333 8999999999985
No 360
>KOG3887|consensus
Probab=87.92 E-value=7.8 Score=29.54 Aligned_cols=88 Identities=10% Similarity=0.078 Sum_probs=44.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC-Ccc------ccHHHHHHHHHH----hCCeEEEE
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH-QRV------VTLERHAKLAQS----LHLHSFAV 100 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-~~~------~~~~~~~~~~~~----~~~~~~~~ 100 (158)
+++|+|+-+. -.+.+.+....+.....-++++.+=+...|.|-.. +.. +.....+.++.. ..+.|+-|
T Consensus 105 LifvIDaQdd-y~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~kietqrdI~qr~~d~l~d~gle~v~vsf~LT 183 (347)
T KOG3887|consen 105 LIFVIDAQDD-YMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDFKIETQRDIHQRTNDELADAGLEKVQVSFYLT 183 (347)
T ss_pred EEEEEechHH-HHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhhhhhhHHHHHHHhhHHHHhhhhccceEEEEEe
Confidence 8888887542 22222222222221111222388889999999542 111 111112222222 12345555
Q ss_pred eCCCCCCHHHHHHHHHHHHHH
Q psy2600 101 SARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 101 Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
|. ...+|-|.|..+++.+..
T Consensus 184 SI-yDHSIfEAFSkvVQkLip 203 (347)
T KOG3887|consen 184 SI-YDHSIFEAFSKVVQKLIP 203 (347)
T ss_pred ee-cchHHHHHHHHHHHHHhh
Confidence 54 566888899888876543
No 361
>KOG1954|consensus
Probab=87.87 E-value=0.76 Score=36.90 Aligned_cols=41 Identities=17% Similarity=0.256 Sum_probs=27.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
++++||+...+--++....+..++.+. -.+-+|.||+|...
T Consensus 185 IiLlfD~hKLDIsdEf~~vi~aLkG~E-----dkiRVVLNKADqVd 225 (532)
T KOG1954|consen 185 IILLFDAHKLDISDEFKRVIDALKGHE-----DKIRVVLNKADQVD 225 (532)
T ss_pred EEEEechhhccccHHHHHHHHHhhCCc-----ceeEEEeccccccC
Confidence 899999865444444445555565333 45788899999643
No 362
>KOG1970|consensus
Probab=86.96 E-value=2.8 Score=35.37 Aligned_cols=44 Identities=9% Similarity=0.103 Sum_probs=21.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
+|+|=|+-+..-+++.+.+.+-+..+.... ..|+|++.+-+-..
T Consensus 197 liLveDLPn~~~~d~~~~f~evL~~y~s~g-~~PlIf~iTd~~~~ 240 (634)
T KOG1970|consen 197 LILVEDLPNQFYRDDSETFREVLRLYVSIG-RCPLIFIITDSLSN 240 (634)
T ss_pred EEEeeccchhhhhhhHHHHHHHHHHHHhcC-CCcEEEEEeccccC
Confidence 677777654322222222222222222211 27888888877653
No 363
>PF11111 CENP-M: Centromere protein M (CENP-M); InterPro: IPR020987 The prime candidate for specifying centromere identity is the array of nucleosomes assembles associated with CENP-A []. CENP-A recruits a nucleosome associated complex (CENP-A-NAC complex) comprised of CENP-M which this entry represents, along with two other proteins []. Assembly of the CENP-A NAC at centromeres is partly dependent on CENP-M. The CENP-A NAC is essential, as disruption of the complex causes errors of chromosome alignment and segregation that preclude cell survival [].
Probab=86.85 E-value=9.3 Score=27.31 Aligned_cols=89 Identities=12% Similarity=0.053 Sum_probs=59.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
|-++|++|.+..-|++..+.-+..+...-.- =.+.++++-....+...+...+..+++..+..+++.+--....+..
T Consensus 66 DlIVFvinl~sk~SL~~ve~SL~~vd~~ffl---GKVCfl~t~a~~~~~~sv~~~~V~kla~~y~~plL~~~le~~~~~~ 142 (176)
T PF11111_consen 66 DLIVFVINLHSKYSLQSVEASLSHVDPSFFL---GKVCFLATNAGRESHCSVHPNEVRKLAATYNSPLLFADLENEEGRT 142 (176)
T ss_pred EEEEEEEecCCcccHHHHHHHHhhCChhhhc---cceEEEEcCCCcccccccCHHHHHHHHHHhCCCEEEeecccchHHH
Confidence 4489999999988888876555544311111 1245556655555556778889999999999998887666666655
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
.+=+.|++.+.-
T Consensus 143 ~lAqRLL~~lqi 154 (176)
T PF11111_consen 143 SLAQRLLRMLQI 154 (176)
T ss_pred HHHHHHHHHHHH
Confidence 555555555443
No 364
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=85.83 E-value=7.6 Score=31.71 Aligned_cols=41 Identities=15% Similarity=-0.005 Sum_probs=25.9
Q ss_pred EEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH-HHHHH
Q psy2600 67 ALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC-WVNTR 113 (158)
Q Consensus 67 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~lf~ 113 (158)
=+|.+|.|... ..-.+..++...++++..+ .+|++| +++..
T Consensus 330 ~~I~TKlDEt~----~~G~~l~~~~~~~lPi~yv--t~Gq~VP~Dl~~ 371 (420)
T PRK14721 330 GCIITKVDEAA----SLGIALDAVIRRKLVLHYV--TNGQKVPEDLHE 371 (420)
T ss_pred EEEEEeeeCCC----CccHHHHHHHHhCCCEEEE--ECCCCchhhhhh
Confidence 56788888643 2335666677778777666 357777 44443
No 365
>KOG0448|consensus
Probab=84.62 E-value=6.9 Score=33.85 Aligned_cols=41 Identities=24% Similarity=0.177 Sum_probs=22.6
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhC--------CeEEEEeCCC
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLH--------LHSFAVSART 104 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--------~~~~~~Sa~~ 104 (158)
+-+.++-||+|.........+........++ --+|++||+.
T Consensus 262 pniFIlnnkwDasase~ec~e~V~~Qi~eL~v~~~~eA~DrvfFVS~~e 310 (749)
T KOG0448|consen 262 PNIFILNNKWDASASEPECKEDVLKQIHELSVVTEKEAADRVFFVSAKE 310 (749)
T ss_pred CcEEEEechhhhhcccHHHHHHHHHHHHhcCcccHhhhcCeeEEEeccc
Confidence 5578889999986543322333332222222 2368888653
No 366
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.45 E-value=13 Score=31.46 Aligned_cols=39 Identities=13% Similarity=0.057 Sum_probs=24.9
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
.+.-+|.||+|... ..-....+....++++..++ +|++|
T Consensus 485 ~~~gvILTKlDEt~----~lG~aLsv~~~~~LPI~yvt--~GQ~V 523 (559)
T PRK12727 485 KPQGVVLTKLDETG----RFGSALSVVVDHQMPITWVT--DGQRV 523 (559)
T ss_pred CCeEEEEecCcCcc----chhHHHHHHHHhCCCEEEEe--CCCCc
Confidence 35568899999632 23456666667777766653 46666
No 367
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=83.77 E-value=7.3 Score=30.54 Aligned_cols=81 Identities=16% Similarity=0.064 Sum_probs=45.5
Q ss_pred EEEEEECCCh---hHHhhHHHHHHHHhhhcCCCCCc-EEEEEEeCCCCCCCccc---cHHHHHHHHHHhCC-----eEEE
Q psy2600 32 VIFMYDITSG---QSFHSIPTWVDLFHLNRKSSTPT-YVALVANKGDMEHQRVV---TLERHAKLAQSLHL-----HSFA 99 (158)
Q Consensus 32 ~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~~~~~---~~~~~~~~~~~~~~-----~~~~ 99 (158)
+|+|..++|. ++-++ +...++.. + .++++.||||+..+.++ -..+.+.+...+++ +++.
T Consensus 102 AILVVsA~dGpmPqTrEH----iLlarqvG-----vp~ivvflnK~Dmvdd~ellelVemEvreLLs~y~f~gd~~Pii~ 172 (394)
T COG0050 102 AILVVAATDGPMPQTREH----ILLARQVG-----VPYIVVFLNKVDMVDDEELLELVEMEVRELLSEYGFPGDDTPIIR 172 (394)
T ss_pred cEEEEEcCCCCCCcchhh----hhhhhhcC-----CcEEEEEEecccccCcHHHHHHHHHHHHHHHHHcCCCCCCcceee
Confidence 8888888873 33332 22233433 4 58888999999764432 22334556666654 3555
Q ss_pred EeCCCC--------CCHHHHHHHHHHHHHH
Q psy2600 100 VSARTG--------DNCWVNTRTPEINPLK 121 (158)
Q Consensus 100 ~Sa~~~--------~~i~~lf~~l~~~~~~ 121 (158)
-||..- ..|.+|++.+-+.+..
T Consensus 173 gSal~ale~~~~~~~~i~eLm~avd~yip~ 202 (394)
T COG0050 173 GSALKALEGDAKWEAKIEELMDAVDSYIPT 202 (394)
T ss_pred chhhhhhcCCcchHHHHHHHHHHHHhcCCC
Confidence 555421 2355666555555543
No 368
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=83.54 E-value=3.8 Score=26.69 Aligned_cols=52 Identities=19% Similarity=0.155 Sum_probs=33.8
Q ss_pred EEEECCCCCCeE------------EEEEEECCChh------HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 20 VVLLGDPSCGKI------------VIFMYDITSGQ------SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 20 i~~~G~~~vgk~------------~i~v~d~~~~~------s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|++.|.+|+||+ -++-++..... +...+..++....... .|.+++.--+|..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~-----~~~vl~iDe~d~l 70 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSA-----KPCVLFIDEIDKL 70 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTS-----TSEEEEEETGGGT
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccc-----cceeeeeccchhc
Confidence 579999999998 45556654322 3333455555554332 3789999999864
No 369
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=82.73 E-value=0.63 Score=33.57 Aligned_cols=19 Identities=32% Similarity=0.607 Sum_probs=16.6
Q ss_pred EEEEEEECCCCCCeEEEEE
Q psy2600 17 QLKVVLLGDPSCGKIVIFM 35 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~~i~v 35 (158)
.+|++++|+.+|||+.|+.
T Consensus 2 ~~Kiv~vG~~~vGKTsLi~ 20 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLIC 20 (195)
T ss_pred ceEEEEECCCCcCHHHHHH
Confidence 4799999999999997763
No 370
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=82.47 E-value=5.4 Score=31.84 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=22.1
Q ss_pred cEEEEEEeCCCCCCCccc--cHHHHHHHHHHhCCeEEE
Q psy2600 64 TYVALVANKGDMEHQRVV--TLERHAKLAQSLHLHSFA 99 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~ 99 (158)
+-+|.|..|+|.....++ ......+....+++.+|.
T Consensus 163 vNlIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~ 200 (373)
T COG5019 163 VNLIPVIAKADTLTDDELAEFKERIREDLEQYNIPVFD 200 (373)
T ss_pred cCeeeeeeccccCCHHHHHHHHHHHHHHHHHhCCceeC
Confidence 778999999997643322 222334444556777765
No 371
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=82.27 E-value=3.3 Score=35.97 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=30.1
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
+-|++++|+|+...-..+...-|....+ ++ +|.+++.||.|.
T Consensus 99 vlDgavvVvdaveGV~~QTEtv~rqa~~-~~-----vp~i~fiNKmDR 140 (697)
T COG0480 99 VLDGAVVVVDAVEGVEPQTETVWRQADK-YG-----VPRILFVNKMDR 140 (697)
T ss_pred hhcceEEEEECCCCeeecHHHHHHHHhh-cC-----CCeEEEEECccc
Confidence 5577999999987544444445555443 33 899999999996
No 372
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=79.14 E-value=4.7 Score=30.67 Aligned_cols=91 Identities=11% Similarity=-0.095 Sum_probs=43.9
Q ss_pred eEEEEEEECCCh-----h--HHhh-HHHHHH---HHhhhcCCCCCcEEEEEEeCCCCCCCcc--ccHHHHHHHHHHhCCe
Q psy2600 30 KIVIFMYDITSG-----Q--SFHS-IPTWVD---LFHLNRKSSTPTYVALVANKGDMEHQRV--VTLERHAKLAQSLHLH 96 (158)
Q Consensus 30 k~~i~v~d~~~~-----~--s~~~-~~~~~~---~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~ 96 (158)
.++|+++|+.+. + .+.. ...+.. ++.+.-.-. +|+.+|.||+|+...=. ...-..+...+-+|..
T Consensus 27 nGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~--~PVYvv~Tk~D~l~GF~ef~~~L~~~~r~q~lG~t 104 (266)
T PF14331_consen 27 NGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVR--LPVYVVFTKCDLLPGFDEFFSDLSEEEREQVLGFT 104 (266)
T ss_pred CEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCC--CCeEeeeECCCcccCHHHHHHhCCHHHHhCCcccc
Confidence 568999997642 1 1122 223333 333222222 99999999999853110 0000111122234543
Q ss_pred EEEEeCCCCCC---HHHHHHHHHHHHHHh
Q psy2600 97 SFAVSARTGDN---CWVNTRTPEINPLKY 122 (158)
Q Consensus 97 ~~~~Sa~~~~~---i~~lf~~l~~~~~~~ 122 (158)
+=......... +.+.|+.+...+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~~l~~~L~~~ 133 (266)
T PF14331_consen 105 FPYDEDADGDAWAWFDEEFDELVARLNAR 133 (266)
T ss_pred cCCccccccchHHHHHHHHHHHHHHHHHH
Confidence 32222233333 677777766655443
No 373
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=78.77 E-value=5.7 Score=27.96 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=23.3
Q ss_pred HHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Q psy2600 85 RHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEI 117 (158)
Q Consensus 85 ~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (158)
+.....+..|.+++.+|+.++.+++++...+..
T Consensus 3 ~~~~~y~~~gy~v~~~S~~~~~g~~~l~~~l~~ 35 (161)
T PF03193_consen 3 ELLEQYEKLGYPVFFISAKTGEGIEELKELLKG 35 (161)
T ss_dssp HHHHHHHHTTSEEEE-BTTTTTTHHHHHHHHTT
T ss_pred HHHHHHHHcCCcEEEEeCCCCcCHHHHHHHhcC
Confidence 344555677888888888888888888775443
No 374
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=77.89 E-value=9.9 Score=27.05 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=34.4
Q ss_pred hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEE
Q psy2600 41 GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAV 100 (158)
Q Consensus 41 ~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (158)
++.-.++..|+.+++... +.++++-|.. +.....+++.+|++|+.-
T Consensus 45 ~~~tpe~~~W~~e~k~~g-----i~v~vvSNn~---------e~RV~~~~~~l~v~fi~~ 90 (175)
T COG2179 45 PDATPELRAWLAELKEAG-----IKVVVVSNNK---------ESRVARAAEKLGVPFIYR 90 (175)
T ss_pred CCCCHHHHHHHHHHHhcC-----CEEEEEeCCC---------HHHHHhhhhhcCCceeec
Confidence 455667889999999766 7778877743 346777888899988763
No 375
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=77.64 E-value=4.8 Score=26.80 Aligned_cols=12 Identities=42% Similarity=0.852 Sum_probs=11.1
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+++.|.+++|||
T Consensus 2 ii~~G~pgsGKS 13 (143)
T PF13671_consen 2 IILCGPPGSGKS 13 (143)
T ss_dssp EEEEESTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 689999999998
No 376
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.16 E-value=5.6 Score=36.63 Aligned_cols=19 Identities=32% Similarity=0.616 Sum_probs=14.7
Q ss_pred CcceEE-EEEEECCCCCCeE
Q psy2600 13 NYEIQL-KVVLLGDPSCGKI 31 (158)
Q Consensus 13 ~~~~~~-ki~~~G~~~vgk~ 31 (158)
++-|.+ ..++||.++.||+
T Consensus 120 r~lyeLPWy~viG~pgsGKT 139 (1188)
T COG3523 120 RYLYELPWYMVIGPPGSGKT 139 (1188)
T ss_pred chhhcCCceEEecCCCCCcc
Confidence 344443 7899999999999
No 377
>KOG3929|consensus
Probab=76.20 E-value=26 Score=27.03 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=12.4
Q ss_pred CcEEEEEEeCCCCC
Q psy2600 63 PTYVALVANKGDME 76 (158)
Q Consensus 63 ~~piilv~nK~Dl~ 76 (158)
++|+++||.|.|.-
T Consensus 190 P~PV~IVgsKYDvF 203 (363)
T KOG3929|consen 190 PVPVVIVGSKYDVF 203 (363)
T ss_pred CCceEEeccchhhh
Confidence 58999999999974
No 378
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=76.02 E-value=9 Score=26.23 Aligned_cols=39 Identities=18% Similarity=0.311 Sum_probs=20.0
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKG 73 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 73 (158)
+.+|+|.+.+..-+-.+...|........ ..+++|.||+
T Consensus 130 d~vi~V~~~~~~~~~~~~~~l~~~~~~~~-----~~~i~V~nk~ 168 (168)
T PF00350_consen 130 DVVIFVVDANQDLTESDMEFLKQMLDPDK-----SRTIFVLNKA 168 (168)
T ss_dssp EEEEEEEETTSTGGGHHHHHHHHHHTTTC-----SSEEEEEE-G
T ss_pred CEEEEEeccCcccchHHHHHHHHHhcCCC-----CeEEEEEcCC
Confidence 44777777766433333334444443332 3367777774
No 379
>KOG2485|consensus
Probab=75.93 E-value=3.6 Score=32.20 Aligned_cols=55 Identities=13% Similarity=-0.050 Sum_probs=32.5
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC--HHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN--CWVNTRTPEINP 119 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~--i~~lf~~l~~~~ 119 (158)
+|-|+|.||+||....+ .....+.++.+....++..+|....+ +..++..+....
T Consensus 74 k~riiVlNK~DLad~~~-~k~~iq~~~~~~~~~~~~~~c~~~~~~~v~~l~~il~~~~ 130 (335)
T KOG2485|consen 74 KPRIIVLNKMDLADPKE-QKKIIQYLEWQNLESYIKLDCNKDCNKQVSPLLKILTILS 130 (335)
T ss_pred CceEEEEecccccCchh-hhHHHHHHHhhcccchhhhhhhhhhhhccccHHHHHHHHH
Confidence 78899999999965322 23345555555445566555555444 555555544433
No 380
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=74.98 E-value=17 Score=28.67 Aligned_cols=44 Identities=18% Similarity=0.068 Sum_probs=26.9
Q ss_pred EEEEeCCCCCCCccccHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHHH
Q psy2600 67 ALVANKGDMEHQRVVTLERHAKLAQSLH--LHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 67 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~ 113 (158)
++|.||+|+..... .+..+...++.+ ..++.+|. .+....+++.
T Consensus 149 ~ivlNK~Dlv~~~~--l~~l~~~l~~lnp~A~i~~~~~-~~~~~~~ll~ 194 (323)
T COG0523 149 VIVLNKTDLVDAEE--LEALEARLRKLNPRARIIETSY-GDVDLAELLD 194 (323)
T ss_pred EEEEecccCCCHHH--HHHHHHHHHHhCCCCeEEEccc-cCCCHHHhhc
Confidence 88999999976443 334455556554 56777766 3444444443
No 381
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=74.54 E-value=31 Score=26.31 Aligned_cols=72 Identities=15% Similarity=0.105 Sum_probs=43.1
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
.+..++|.|.+.. .+.+. +...+.+.. -+.-+|.||+|.... .-.+..+....+.++.+++ +|+++
T Consensus 191 ~~~~~LVl~a~~~--~~~~~-~~~~f~~~~-----~~~g~IlTKlDe~~~----~G~~l~~~~~~~~Pi~~~~--~Gq~~ 256 (272)
T TIGR00064 191 PDEVLLVLDATTG--QNALE-QAKVFNEAV-----GLTGIILTKLDGTAK----GGIILSIAYELKLPIKFIG--VGEKI 256 (272)
T ss_pred CceEEEEEECCCC--HHHHH-HHHHHHhhC-----CCCEEEEEccCCCCC----ccHHHHHHHHHCcCEEEEe--CCCCh
Confidence 3557889998642 22222 223333222 235788999997532 2355566667788888876 78887
Q ss_pred HHHHHH
Q psy2600 109 WVNTRT 114 (158)
Q Consensus 109 ~~lf~~ 114 (158)
+++-..
T Consensus 257 ~dl~~~ 262 (272)
T TIGR00064 257 DDLAPF 262 (272)
T ss_pred HhCccC
Confidence 766443
No 382
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=73.20 E-value=14 Score=28.33 Aligned_cols=27 Identities=22% Similarity=0.274 Sum_probs=24.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR 58 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~ 58 (158)
+-++.|+-+...|.++..++.+++.+.
T Consensus 54 vAv~iDiRs~~~~~~l~~~l~~l~~~~ 80 (286)
T COG1660 54 VAVVIDVRSREFFGDLEEVLDELKDNG 80 (286)
T ss_pred EEEEEecccchhHHHHHHHHHHHHhcC
Confidence 788999999999999999999999664
No 383
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=73.00 E-value=4.1 Score=32.98 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
--++++|..|||||
T Consensus 204 ~vi~LVGPTGVGKT 217 (407)
T COG1419 204 RVIALVGPTGVGKT 217 (407)
T ss_pred cEEEEECCCCCcHH
Confidence 35789999999998
No 384
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=71.73 E-value=35 Score=26.25 Aligned_cols=54 Identities=20% Similarity=0.315 Sum_probs=35.1
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|+.++|.+++||+ +++||-.-. +..++...+++++.....- ...++|.+..|.+
T Consensus 71 r~~Ifg~~g~GKt~L~l~~i~~~~~~~v~~V~~~iG-er~~ev~e~~~~~~~~~~~---~~tvvv~~t~d~~ 138 (274)
T cd01132 71 RELIIGDRQTGKTAIAIDTIINQKGKKVYCIYVAIG-QKASTVAQVVKTLEEHGAM---EYTIVVAATASDP 138 (274)
T ss_pred EEEeeCCCCCCccHHHHHHHHHhcCCCeEEEEEecc-cchHHHHHHHHHHHhcCcc---ceeEEEEeCCCCc
Confidence 7889999999999 333443332 3456666677777643321 3457788888865
No 385
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=71.23 E-value=43 Score=25.40 Aligned_cols=58 Identities=26% Similarity=0.186 Sum_probs=35.2
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH 96 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~ 96 (158)
..|.+|.|.|++- .|+....+..+...+..- .++.+|.||+|.. .......+...+.+
T Consensus 155 ~vD~vivVvDpS~-~sl~taeri~~L~~elg~----k~i~~V~NKv~e~------e~~~~~~~~~~~~~ 212 (255)
T COG3640 155 GVDLVIVVVDPSY-KSLRTAERIKELAEELGI----KRIFVVLNKVDEE------EELLRELAEELGLE 212 (255)
T ss_pred CCCEEEEEeCCcH-HHHHHHHHHHHHHHHhCC----ceEEEEEeeccch------hHHHHhhhhccCCe
Confidence 3467899998863 455555554444444331 7899999999953 22344455555554
No 386
>PF13479 AAA_24: AAA domain
Probab=71.03 E-value=13 Score=27.03 Aligned_cols=14 Identities=36% Similarity=0.878 Sum_probs=13.3
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
+|+++.|.+|+|||
T Consensus 4 ~~~lIyG~~G~GKT 17 (213)
T PF13479_consen 4 IKILIYGPPGSGKT 17 (213)
T ss_pred eEEEEECCCCCCHH
Confidence 68999999999998
No 387
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=69.99 E-value=14 Score=29.56 Aligned_cols=41 Identities=22% Similarity=0.170 Sum_probs=28.5
Q ss_pred cEEEEEEeCCCCCCCccc-cHHHHHHHHHHhCCeEEEEeCCC
Q psy2600 64 TYVALVANKGDMEHQRVV-TLERHAKLAQSLHLHSFAVSART 104 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~~~~~~~~Sa~~ 104 (158)
+|+++++||.|....... .-.....+++..+..++.+||..
T Consensus 207 KP~lyvaN~~e~~~~~~n~~~~~i~~~~~~~~~~vV~~sA~~ 248 (372)
T COG0012 207 KPMLYVANVSEDDLANLNEYVKRLKELAAKENAEVVPVSAAI 248 (372)
T ss_pred CCeEEEEECCcccccchhHHHHHHHHHhhhcCCcEEEeeHHH
Confidence 899999999997532210 12345566666677889999864
No 388
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=69.89 E-value=40 Score=29.88 Aligned_cols=42 Identities=19% Similarity=0.045 Sum_probs=27.5
Q ss_pred EEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH-HHHHHH
Q psy2600 67 ALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC-WVNTRT 114 (158)
Q Consensus 67 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~lf~~ 114 (158)
=+|.+|.|.... .-.+..+....++++..++ +|++| +++...
T Consensus 327 glIlTKLDEt~~----~G~iL~i~~~~~lPI~yit--~GQ~VPdDL~~a 369 (767)
T PRK14723 327 GCIITKLDEATH----LGPALDTVIRHRLPVHYVS--TGQKVPEHLELA 369 (767)
T ss_pred EEEEeccCCCCC----ccHHHHHHHHHCCCeEEEe--cCCCChhhcccC
Confidence 467899996432 3356667777788877764 47787 555443
No 389
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=69.67 E-value=2.6 Score=30.09 Aligned_cols=13 Identities=38% Similarity=0.943 Sum_probs=12.4
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|+++|.+|+||+
T Consensus 2 riiilG~pGaGK~ 14 (178)
T COG0563 2 RILILGPPGAGKS 14 (178)
T ss_pred eEEEECCCCCCHH
Confidence 7899999999998
No 390
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=69.23 E-value=33 Score=27.09 Aligned_cols=40 Identities=23% Similarity=0.214 Sum_probs=28.2
Q ss_pred EEEEEEECCCCCCeE-----------------EEEEEECCChhHHhhHHHHHHHHhh
Q psy2600 17 QLKVVLLGDPSCGKI-----------------VIFMYDITSGQSFHSIPTWVDLFHL 56 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~-----------------~i~v~d~~~~~s~~~~~~~~~~~~~ 56 (158)
.+-|.+.|.+|+||| .++..|++...+--.+.-|..++..
T Consensus 56 ~~~igi~G~~GaGKSTl~~~l~~~l~~~g~~v~vi~~Dp~s~~~~gallgd~~r~~~ 112 (332)
T PRK09435 56 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMER 112 (332)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeCCCccccchhhhchHhHHHh
Confidence 357899999999998 7777777655444445556666553
No 391
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=68.20 E-value=44 Score=27.47 Aligned_cols=14 Identities=21% Similarity=0.380 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-++++|..|+|||
T Consensus 101 ~vi~lvG~~GvGKT 114 (429)
T TIGR01425 101 NVIMFVGLQGSGKT 114 (429)
T ss_pred eEEEEECCCCCCHH
Confidence 46889999999998
No 392
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=68.02 E-value=7.9 Score=29.57 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=11.8
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-+.++|.+|+|||
T Consensus 73 ~vi~l~G~~G~GKT 86 (272)
T TIGR00064 73 NVILFVGVNGVGKT 86 (272)
T ss_pred eEEEEECCCCCcHH
Confidence 35678899999998
No 393
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=67.99 E-value=16 Score=24.46 Aligned_cols=61 Identities=15% Similarity=0.011 Sum_probs=41.4
Q ss_pred EEEEEEeCCCCCC---Cccc---cHHHHHHHHHHhCC-----eEEEEeCCCCCCHHHHHHHHHHHHHHhHhh
Q psy2600 65 YVALVANKGDMEH---QRVV---TLERHAKLAQSLHL-----HSFAVSARTGDNCWVNTRTPEINPLKYLQS 125 (158)
Q Consensus 65 piilv~nK~Dl~~---~~~~---~~~~~~~~~~~~~~-----~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~~ 125 (158)
-++++|.|.+.-+ .... .-+-..++...+|+ .++.+||.+++.+.+.++..++.+.+....
T Consensus 56 GV~v~GC~~geCHy~~GN~ka~rR~~~lke~l~elgie~eRv~~~wiSa~E~ekf~e~~~efv~~i~~lGpn 127 (132)
T COG1908 56 GVLVAGCKIGECHYISGNYKAKRRMELLKELLKELGIEPERVRVLWISAAEGEKFAETINEFVERIKELGPN 127 (132)
T ss_pred eEEEecccccceeeeccchHHHHHHHHHHHHHHHhCCCcceEEEEEEehhhHHHHHHHHHHHHHHHHHhCCC
Confidence 5789999998531 1110 11223344455564 489999999999999999999998876433
No 394
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=67.91 E-value=34 Score=27.16 Aligned_cols=41 Identities=12% Similarity=0.003 Sum_probs=23.6
Q ss_pred EEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Q psy2600 67 ALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 67 ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~ 113 (158)
=++.+|+|-...- -.....+..+++++.++-. |+++++|..
T Consensus 288 GiIlTKlDgtAKG----G~il~I~~~l~~PI~fiGv--GE~~~DL~~ 328 (340)
T COG0552 288 GIILTKLDGTAKG----GIILSIAYELGIPIKFIGV--GEGYDDLRP 328 (340)
T ss_pred eEEEEecccCCCc----ceeeeHHHHhCCCEEEEeC--CCChhhccc
Confidence 3557888853221 1334556677888777643 666666543
No 395
>PF08438 MMR_HSR1_C: GTPase of unknown function C-terminal; InterPro: IPR013646 This domain is found at the C terminus of IPR002917 from INTERPRO in archaeal and eukaryotic GTP-binding proteins. ; PDB: 1WXQ_A.
Probab=66.01 E-value=8.8 Score=25.21 Aligned_cols=31 Identities=29% Similarity=0.233 Sum_probs=18.2
Q ss_pred EEeCCCCCCCccccHHHHHHHHHHhC-CeEEEEeCC
Q psy2600 69 VANKGDMEHQRVVTLERHAKLAQSLH-LHSFAVSAR 103 (158)
Q Consensus 69 v~nK~Dl~~~~~~~~~~~~~~~~~~~-~~~~~~Sa~ 103 (158)
++||+|++. ..+...++.+.+. ..++.|||.
T Consensus 1 AaNK~D~~~----a~~ni~kl~~~~~~~~vVp~SA~ 32 (109)
T PF08438_consen 1 AANKADLPA----ADENIEKLKEKYPDEPVVPTSAA 32 (109)
T ss_dssp EEE-GGG-S-----HHHHHHHHHHHTT-EEEEE-HH
T ss_pred CCccccccc----cHhHHHHHHHhCCCCceeeccHH
Confidence 589999753 2445666666664 678889885
No 396
>PRK10867 signal recognition particle protein; Provisional
Probab=65.25 E-value=60 Score=26.71 Aligned_cols=14 Identities=21% Similarity=0.449 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-++++|.+|+|||
T Consensus 101 ~vI~~vG~~GsGKT 114 (433)
T PRK10867 101 TVIMMVGLQGAGKT 114 (433)
T ss_pred EEEEEECCCCCcHH
Confidence 56889999999998
No 397
>KOG2655|consensus
Probab=64.71 E-value=33 Score=27.53 Aligned_cols=40 Identities=13% Similarity=0.102 Sum_probs=23.4
Q ss_pred cEEEEEEeCCCCCCCccc--cHHHHHHHHHHhCCeEEEEeCC
Q psy2600 64 TYVALVANKGDMEHQRVV--TLERHAKLAQSLHLHSFAVSAR 103 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~ 103 (158)
+.+|.|..|+|.....++ ....+......+++.+|.-...
T Consensus 159 vNiIPVI~KaD~lT~~El~~~K~~I~~~i~~~nI~vf~fp~~ 200 (366)
T KOG2655|consen 159 VNLIPVIAKADTLTKDELNQFKKRIRQDIEEHNIKVFDFPTD 200 (366)
T ss_pred ccccceeeccccCCHHHHHHHHHHHHHHHHHcCcceecCCCC
Confidence 788999999997643332 1222334445566766554443
No 398
>KOG0460|consensus
Probab=63.80 E-value=36 Score=27.36 Aligned_cols=69 Identities=14% Similarity=0.044 Sum_probs=38.9
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc---ccHHHHHHHHHHhC-----CeEEEEe
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV---VTLERHAKLAQSLH-----LHSFAVS 101 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~---~~~~~~~~~~~~~~-----~~~~~~S 101 (158)
|++|+|...+|.. ..+.+..+...++-.- ..+++..||.|+..+.+ +-+-+.+++...+| ++++.=|
T Consensus 142 DGaILVVaatDG~-MPQTrEHlLLArQVGV----~~ivvfiNKvD~V~d~e~leLVEmE~RElLse~gf~Gd~~PvI~GS 216 (449)
T KOG0460|consen 142 DGAILVVAATDGP-MPQTREHLLLARQVGV----KHIVVFINKVDLVDDPEMLELVEMEIRELLSEFGFDGDNTPVIRGS 216 (449)
T ss_pred CceEEEEEcCCCC-CcchHHHHHHHHHcCC----ceEEEEEecccccCCHHHHHHHHHHHHHHHHHcCCCCCCCCeeecc
Confidence 5688898888832 2222333333344331 45889999999874333 22334555666665 3566555
Q ss_pred CC
Q psy2600 102 AR 103 (158)
Q Consensus 102 a~ 103 (158)
|.
T Consensus 217 AL 218 (449)
T KOG0460|consen 217 AL 218 (449)
T ss_pred hh
Confidence 44
No 399
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=63.75 E-value=25 Score=27.13 Aligned_cols=52 Identities=21% Similarity=0.257 Sum_probs=35.8
Q ss_pred EEEEECCCCCCeE-------------------------------------EEEEEECCChhHHhhHHHHHHHHhhhcCCC
Q psy2600 19 KVVLLGDPSCGKI-------------------------------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSS 61 (158)
Q Consensus 19 ki~~~G~~~vgk~-------------------------------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~ 61 (158)
.+++.|.+|+||| +.++.|+.+...+.....++..++...
T Consensus 8 ~i~i~G~~GsGKtt~~~~l~~~g~~~~d~~~~~L~~~l~~~~~~~~~~~~~av~iD~r~~~~~~~~~~~~~~L~~~g--- 84 (288)
T PRK05416 8 LVIVTGLSGAGKSVALRALEDLGYYCVDNLPPSLLPKLVELLAQSGGIRKVAVVIDVRSRPFFDDLPEALDELRERG--- 84 (288)
T ss_pred EEEEECCCCCcHHHHHHHHHHcCCeEECCcCHHHHHHHHHHHHhcCCCCCeEEEEccCchhhHHHHHHHHHHHHHcC---
Confidence 6889999999998 467778776554455666777776543
Q ss_pred CCcEEEEEEeCCCC
Q psy2600 62 TPTYVALVANKGDM 75 (158)
Q Consensus 62 ~~~piilv~nK~Dl 75 (158)
.++.+|.-+++.
T Consensus 85 --~~~~iI~L~a~~ 96 (288)
T PRK05416 85 --IDVRVLFLDASD 96 (288)
T ss_pred --CcEEEEEEECCH
Confidence 455556666663
No 400
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=63.59 E-value=8.8 Score=26.69 Aligned_cols=12 Identities=33% Similarity=0.631 Sum_probs=10.7
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+++.|.+|+|||
T Consensus 3 ~~~~G~~G~GKT 14 (173)
T cd03115 3 ILLVGLQGVGKT 14 (173)
T ss_pred EEEECCCCCCHH
Confidence 578899999998
No 401
>PRK08118 topology modulation protein; Reviewed
Probab=62.97 E-value=3.8 Score=28.74 Aligned_cols=13 Identities=38% Similarity=0.774 Sum_probs=12.5
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
||+++|.+|+|||
T Consensus 3 rI~I~G~~GsGKS 15 (167)
T PRK08118 3 KIILIGSGGSGKS 15 (167)
T ss_pred EEEEECCCCCCHH
Confidence 7999999999998
No 402
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.81 E-value=16 Score=29.97 Aligned_cols=14 Identities=29% Similarity=0.574 Sum_probs=12.8
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+.++|..|+|||
T Consensus 242 ~vI~LVGptGvGKT 255 (436)
T PRK11889 242 QTIALIGPTGVGKT 255 (436)
T ss_pred cEEEEECCCCCcHH
Confidence 57899999999998
No 403
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=62.44 E-value=16 Score=25.31 Aligned_cols=36 Identities=17% Similarity=0.228 Sum_probs=19.2
Q ss_pred EEEEEECCChhH-HhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 32 VIFMYDITSGQS-FHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 32 ~i~v~d~~~~~s-~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
++++.|...... ......+...+...+ ++|.||+|+
T Consensus 122 vv~vvDa~~~~~~~~~~~~~~~Qi~~ad--------~ivlnk~dl 158 (158)
T cd03112 122 VITLVDAKHANQHLDQQTEAQSQIAFAD--------RILLNKTDL 158 (158)
T ss_pred EEEEEEhhHhHHHhhccHHHHHHHHHCC--------EEEEecccC
Confidence 788888654222 111123334433222 778999995
No 404
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=61.45 E-value=34 Score=26.48 Aligned_cols=38 Identities=18% Similarity=0.182 Sum_probs=26.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGD 74 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 74 (158)
+.++.|+-....+..+...+.++++.. +.+-++.--++
T Consensus 54 ~Ai~iD~R~~~~~~~~~~~~~~l~~~~-----~~~~ilFLdA~ 91 (284)
T PF03668_consen 54 VAIVIDIRSREFFEDLFEALDELRKKG-----IDVRILFLDAS 91 (284)
T ss_pred EEEEEeCCChHHHHHHHHHHHHHHhcC-----CceEEEEEECC
Confidence 889999988877877777777777554 44455555555
No 405
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=60.84 E-value=11 Score=30.33 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|..|+|||
T Consensus 139 ii~lvGptGvGKT 151 (374)
T PRK14722 139 VFALMGPTGVGKT 151 (374)
T ss_pred EEEEECCCCCCHH
Confidence 5679999999998
No 406
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=60.80 E-value=17 Score=25.47 Aligned_cols=12 Identities=33% Similarity=0.443 Sum_probs=11.3
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
||+-|-+++||+
T Consensus 5 IwltGlsGsGKt 16 (156)
T PF01583_consen 5 IWLTGLSGSGKT 16 (156)
T ss_dssp EEEESSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 789999999998
No 407
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=60.72 E-value=9.2 Score=28.81 Aligned_cols=15 Identities=27% Similarity=0.718 Sum_probs=13.7
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
-++++++|..|+|||
T Consensus 13 ~fr~viIG~sGSGKT 27 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKT 27 (241)
T ss_pred CceEEEECCCCCCHH
Confidence 368999999999999
No 408
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=60.57 E-value=16 Score=25.76 Aligned_cols=39 Identities=23% Similarity=0.297 Sum_probs=22.8
Q ss_pred EEEEEEECCChhHHhhHHH-HHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 31 IVIFMYDITSGQSFHSIPT-WVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~-~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
.++.|.|+.+......... +...+...+ ++|.||+|+..
T Consensus 116 ~iI~vVDa~~~~~~~~~~~~~~~Qi~~AD--------vIvlnK~D~~~ 155 (178)
T PF02492_consen 116 SIITVVDATNFDELENIPELLREQIAFAD--------VIVLNKIDLVS 155 (178)
T ss_dssp EEEEEEEGTTHGGHTTHCHHHHHHHCT-S--------EEEEE-GGGHH
T ss_pred ceeEEeccccccccccchhhhhhcchhcC--------EEEEeccccCC
Confidence 4888999876544444433 333333222 88999999854
No 409
>PRK07261 topology modulation protein; Provisional
Probab=59.74 E-value=4.7 Score=28.38 Aligned_cols=13 Identities=31% Similarity=0.634 Sum_probs=12.3
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+++++|.+|+|||
T Consensus 2 ri~i~G~~GsGKS 14 (171)
T PRK07261 2 KIAIIGYSGSGKS 14 (171)
T ss_pred EEEEEcCCCCCHH
Confidence 6899999999998
No 410
>KOG1534|consensus
Probab=59.50 E-value=25 Score=26.35 Aligned_cols=15 Identities=20% Similarity=0.005 Sum_probs=12.6
Q ss_pred cEEEEEEeCCCCCCC
Q psy2600 64 TYVALVANKGDMEHQ 78 (158)
Q Consensus 64 ~piilv~nK~Dl~~~ 78 (158)
+|-|=|.+|.||.+.
T Consensus 165 ~P~INvlsKMDLlk~ 179 (273)
T KOG1534|consen 165 VPHINVLSKMDLLKD 179 (273)
T ss_pred CcchhhhhHHHHhhh
Confidence 888999999998643
No 411
>PRK08727 hypothetical protein; Validated
Probab=59.07 E-value=28 Score=25.73 Aligned_cols=13 Identities=31% Similarity=0.371 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+|||
T Consensus 43 ~l~l~G~~G~GKT 55 (233)
T PRK08727 43 WLYLSGPAGTGKT 55 (233)
T ss_pred eEEEECCCCCCHH
Confidence 4999999999999
No 412
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=58.33 E-value=16 Score=28.44 Aligned_cols=14 Identities=29% Similarity=0.636 Sum_probs=12.1
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.++++|++|.|||
T Consensus 62 p~lLivG~snnGKT 75 (302)
T PF05621_consen 62 PNLLIVGDSNNGKT 75 (302)
T ss_pred CceEEecCCCCcHH
Confidence 35889999999998
No 413
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=58.03 E-value=10 Score=28.58 Aligned_cols=26 Identities=12% Similarity=-0.262 Sum_probs=22.9
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
.++|..||+++.|+.++++.+.+.++
T Consensus 241 ~pv~~gSa~~~~G~~~ll~~~~~~~p 266 (268)
T cd04170 241 VPVLCGSALTNIGVRELLDALVHLLP 266 (268)
T ss_pred EEEEEeeCCCCcCHHHHHHHHHHhCC
Confidence 46899999999999999999988754
No 414
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=57.70 E-value=84 Score=26.53 Aligned_cols=53 Identities=2% Similarity=-0.135 Sum_probs=26.8
Q ss_pred EEEEEEeCCCCCCC-ccc-----cH--HHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHH
Q psy2600 65 YVALVANKGDMEHQ-RVV-----TL--ERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEI 117 (158)
Q Consensus 65 piilv~nK~Dl~~~-~~~-----~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~ 117 (158)
|+|+|.+-+|.... ... +. .-...+.+..++..+...+....-+...+..++.
T Consensus 167 PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~ 227 (519)
T PF03215_consen 167 PLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILK 227 (519)
T ss_pred CEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHH
Confidence 99999997764311 100 00 1112333444566666666655555555555444
No 415
>PF01268 FTHFS: Formate--tetrahydrofolate ligase; InterPro: IPR000559 Formate--tetrahydrofolate ligase (6.3.4.3 from EC) (formyltetrahydrofolate synthetase) (FTHFS) is one of the enzymes participating in the transfer of one-carbon units, an essential element of various biosynthetic pathways. In many of these processes the transfers of one-carbon units are mediated by the coenzyme tetrahydrofolate (THF). In eukaryotes the FTHFS activity is expressed by a multifunctional enzyme, C-1-tetrahydrofolate synthase (C1-THF synthase), which also catalyses the dehydrogenase and cyclohydrolase activities. Two forms of C1-THF synthases are known [], one is located in the mitochondrial matrix, while the second one is cytoplasmic. In both forms the FTHFS domain consists of about 600 amino acid residues and is located in the C-terminal section of C1-THF synthase. In prokaryotes FTHFS activity is expressed by a monofunctional homotetrameric enzyme of about 560 amino acid residues []. The crystal structure of N(10)-formyltetrahydrofolate synthetase from Moorella thermoacetica shows that the subunit is composed of three domains organised around three mixed beta-sheets. There are two cavities between adjacent domains. One of them was identified as the nucleotide binding site by homology modelling. The large domain contains a seven-stranded beta-sheet surrounded by helices on both sides. The second domain contains a five-stranded beta-sheet with two alpha-helices packed on one side while the other two are a wall of the active site cavity. The third domain contains a four-stranded beta-sheet forming a half-barrel. The concave side is covered by two helices while the convex side is another wall of the large cavity. Arg 97 is likely involved in formyl phosphate binding. The tetrameric molecule is relatively flat with the shape of the letter X, and the active sites are located at the end of the subunits far from the subunit interface [].; GO: 0004329 formate-tetrahydrofolate ligase activity, 0005524 ATP binding, 0009396 folic acid-containing compound biosynthetic process; PDB: 2EO2_A 3DO6_B 1FPM_A 3RBO_A 3PZX_B 3QB6_A 1FP7_A 3SIN_B 1EG7_A 3QUS_A ....
Probab=57.14 E-value=11 Score=31.75 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=40.7
Q ss_pred HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCC---CCCHHHHHHHHHHHH
Q psy2600 43 SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSART---GDNCWVNTRTPEINP 119 (158)
Q Consensus 43 s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~lf~~l~~~~ 119 (158)
.|.++.+.++.++.+. +|+|+..|+..-..+.+ .+...+++++.|+. +.+|-.+ |.|-.+|-+.+++.+
T Consensus 356 G~~NL~rHIeNik~fG-----vpvVVAIN~F~tDT~aE--i~~I~~~~~~~Gv~-~avs~~wa~GGeGa~eLA~~Vv~a~ 427 (557)
T PF01268_consen 356 GFANLERHIENIKKFG-----VPVVVAINRFPTDTDAE--IELIRELCEELGVR-AAVSEHWAKGGEGAVELAEAVVEAC 427 (557)
T ss_dssp HHHHHHHHHHHHHCTT-------EEEEEE--TTS-HHH--HHHHHHHCCCCCEE-EEEC-HHHHGGGGCHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHhcC-----CCeEEEecCCCCCCHHH--HHHHHHHHHhCCCC-EEEechhhcccccHHHHHHHHHHHh
Confidence 3555666777777665 99999999987543222 23455566667776 4455444 567778888888777
No 416
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=57.05 E-value=1.1e+02 Score=25.39 Aligned_cols=89 Identities=9% Similarity=-0.003 Sum_probs=50.8
Q ss_pred EEEEEEECCCCCCeE-----------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc
Q psy2600 17 QLKVVLLGDPSCGKI-----------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR 79 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~-----------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 79 (158)
...|.++|-.|.||| .++..|+-.+..++++...-+.+. +|+.-..+-.| .
T Consensus 100 P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~~--------v~~f~~~~~~~----P 167 (451)
T COG0541 100 PTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQVG--------VPFFGSGTEKD----P 167 (451)
T ss_pred CeEEEEEeccCCChHhHHHHHHHHHHHcCCceEEEecccCChHHHHHHHHHHHHcC--------CceecCCCCCC----H
Confidence 355899999999998 777777777777777666555443 66554322222 1
Q ss_pred cccHHHHHHHHHHhCCeEEEEeCCCCCCH-HHHHHHHHH
Q psy2600 80 VVTLERHAKLAQSLHLHSFAVSARTGDNC-WVNTRTPEI 117 (158)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i-~~lf~~l~~ 117 (158)
.-....+...++..+..++-+...-...+ ++|++.+..
T Consensus 168 v~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El~~ 206 (451)
T COG0541 168 VEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDELKE 206 (451)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccccHHHHHHHHH
Confidence 11223455556666555544433333333 355555544
No 417
>PRK13695 putative NTPase; Provisional
Probab=56.96 E-value=63 Score=22.39 Aligned_cols=46 Identities=7% Similarity=-0.149 Sum_probs=26.6
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
.|++++.+|... ......+....+..++++ +.+|-+++.+.+++.+
T Consensus 127 ~~~i~v~h~~~~-------~~~~~~i~~~~~~~i~~~---~~~~r~~~~~~~~~~~ 172 (174)
T PRK13695 127 KPVIATLHRRSV-------HPFVQEIKSRPGGRVYEL---TPENRDSLPFEILNRL 172 (174)
T ss_pred CeEEEEECchhh-------HHHHHHHhccCCcEEEEE---cchhhhhHHHHHHHHH
Confidence 788888887532 122333444445556665 4556667777776654
No 418
>COG5008 PilU Tfp pilus assembly protein, ATPase PilU [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=56.00 E-value=97 Score=24.25 Aligned_cols=66 Identities=17% Similarity=0.093 Sum_probs=33.4
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 47 IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
...|-..+++--... +.+|++|---|-. +-+.+..+++.-.++..-.-| + +-.+.++.|+...++.
T Consensus 186 Tesw~~AlkNtlRQa--pDvI~IGEvRsre-----tMeyAi~fAeTGHLcmaTLHA-N--~anQaleRIinffP~E 251 (375)
T COG5008 186 TESWEVALKNTLRQA--PDVILIGEVRSRE-----TMEYAIQFAETGHLCMATLHA-N--NANQALERIINFFPEE 251 (375)
T ss_pred hHHHHHHHHHHHhcC--CCeEEEeecccHh-----HHHHHHHHHhcCceEEEEecc-C--CchHHHHHHHhhCcHH
Confidence 344666555221111 4567777655521 345666777765554433222 2 3346666666665553
No 419
>PRK06217 hypothetical protein; Validated
Probab=55.98 E-value=5.8 Score=28.04 Aligned_cols=14 Identities=14% Similarity=0.510 Sum_probs=12.8
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-+|+++|.+|+|||
T Consensus 2 ~~I~i~G~~GsGKS 15 (183)
T PRK06217 2 MRIHITGASGSGTT 15 (183)
T ss_pred eEEEEECCCCCCHH
Confidence 36999999999999
No 420
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=55.40 E-value=99 Score=26.19 Aligned_cols=88 Identities=10% Similarity=0.014 Sum_probs=43.7
Q ss_pred EEEEECCCCCCeE----------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH
Q psy2600 19 KVVLLGDPSCGKI----------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88 (158)
Q Consensus 19 ki~~~G~~~vgk~----------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 88 (158)
=++++|.+++||| -...++.+...+. ...+....+.-..+ .++|+=.+-.+ ...-.....
T Consensus 371 LVil~G~pGSGKST~A~~l~~~~g~~~vn~D~lg~~---~~~~~~a~~~L~~G--~sVVIDaTn~~-----~~~R~~~i~ 440 (526)
T TIGR01663 371 MVIAVGFPGAGKSHFCKKFFQPAGYKHVNADTLGST---QNCLTACERALDQG--KRCAIDNTNPD-----AASRAKFLQ 440 (526)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEECcHHHHHH---HHHHHHHHHHHhCC--CcEEEECCCCC-----HHHHHHHHH
Confidence 3678999999999 1123333322222 22233333222222 56665333332 223356777
Q ss_pred HHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 89 LAQSLHLHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 89 ~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
+|+.+|+++..+-. ....+.+.+.+..+
T Consensus 441 lAk~~gv~v~~i~~--~~p~e~~~~Rn~~R 468 (526)
T TIGR01663 441 CARAAGIPCRCFLF--NAPLAQAKHNIAFR 468 (526)
T ss_pred HHHHcCCeEEEEEe--CCCHHHHHHHHHhh
Confidence 88888876433211 22456665555433
No 421
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=54.98 E-value=5.3 Score=25.79 Aligned_cols=13 Identities=31% Similarity=0.698 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+++|||
T Consensus 1 vI~I~G~~gsGKS 13 (121)
T PF13207_consen 1 VIIISGPPGSGKS 13 (121)
T ss_dssp EEEEEESTTSSHH
T ss_pred CEEEECCCCCCHH
Confidence 4789999999998
No 422
>PRK14531 adenylate kinase; Provisional
Probab=54.89 E-value=6 Score=28.02 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=13.6
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
..+++++|.+|+||+
T Consensus 2 ~~~i~i~G~pGsGKs 16 (183)
T PRK14531 2 KQRLLFLGPPGAGKG 16 (183)
T ss_pred CcEEEEECCCCCCHH
Confidence 458999999999998
No 423
>cd00477 FTHFS Formyltetrahydrofolate synthetase (FTHFS) catalyzes the ATP-dependent activation of formate ion via its addition to the N10 position of tetrahydrofolate. FTHFS is a highly expressed key enzyme in both the Wood-Ljungdahl pathway of autotrophic CO2 fixation (acetogenesis) and the glycine synthase/reductase pathways of purinolysis. The key physiological role of this enzyme in acetogens is to catalyze the formylation of tetrahydrofolate, an initial step in the reduction of carbon dioxide and other one-carbon precursors to acetate. In purinolytic organisms, the enzymatic reaction is reversed, liberating formate from 10-formyltetrahydrofolate with concurrent production of ATP.
Probab=54.63 E-value=87 Score=26.45 Aligned_cols=71 Identities=14% Similarity=0.022 Sum_probs=46.6
Q ss_pred HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEe--CCCCCCHHHHHHHHHHHHH
Q psy2600 43 SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVS--ARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 43 s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S--a~~~~~i~~lf~~l~~~~~ 120 (158)
.+.++...++.++++. +|+++..|+..-..+.+ .+..+++++..|..+..+. +.-|.|-.+|-+.+++.+.
T Consensus 341 G~~NL~~Hi~n~~~fg-----~p~VVaiN~F~~Dt~~E--i~~v~~~~~~~g~~~~~~~~~~~GG~Ga~eLA~~Vi~a~e 413 (524)
T cd00477 341 GFANLRKHIENIKKFG-----VPVVVAINKFSTDTDAE--LALVRKLAEEAGAFVAVSEHWAEGGKGAVELAEAVIEACE 413 (524)
T ss_pred HHHHHHHHHHHHHHcC-----CCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCEEEehhhhhhhhhHHHHHHHHHHHhc
Confidence 3455666667776665 99999999998544333 3456778888887654432 2335667777777776554
No 424
>cd00756 MoaE MoaE family. Members of this family are involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor for a diverse group of redox enzymes. Moco biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. Moco contains a tricyclic pyranopterin, termed molybdopterin (MPT), which carries the cis-dithiolene group responsible for molybdenum ligation. This dithiolene group is generated by MPT synthase in the second major step in Moco biosynthesis. MPT synthase is a heterotetramer consisting of two large (MoaE) and two small (MoaD) subunits.
Probab=53.57 E-value=43 Score=22.41 Aligned_cols=36 Identities=11% Similarity=0.233 Sum_probs=28.2
Q ss_pred EECCCCCCeEEEEEEECCC--hhHHhhHHHHHHHHhhh
Q psy2600 22 LLGDPSCGKIVIFMYDITS--GQSFHSIPTWVDLFHLN 57 (158)
Q Consensus 22 ~~G~~~vgk~~i~v~d~~~--~~s~~~~~~~~~~~~~~ 57 (158)
=+|...+|+.++++.-.+. .+.|+.....+++++..
T Consensus 71 R~G~l~vGe~~v~i~v~a~hR~~af~A~~~~id~lK~~ 108 (124)
T cd00756 71 RVGRLPPGEAIVLVAVSSPHRKEAFEACEFLIDRLKHR 108 (124)
T ss_pred EEcccCCCCEEEEEEEecCCHHHHHHHHHHHHHHHHhh
Confidence 4799999999777666554 56788888889988865
No 425
>COG1806 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.37 E-value=24 Score=27.07 Aligned_cols=34 Identities=6% Similarity=-0.167 Sum_probs=25.7
Q ss_pred HHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 84 ERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 84 ~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
..++.+++..|++++.+|.+ .|+|.=..|+..+.
T Consensus 234 ~~ae~l~~r~~~pvidvt~~---SIEEtAa~Il~~~~ 267 (273)
T COG1806 234 AYAEALFRRNGIPVIDVTNK---SIEETAAKILALLG 267 (273)
T ss_pred HHHHHHHHHhCCCEEecccc---hHHHHHHHHHHHHh
Confidence 34677788889999987765 88888777776653
No 426
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=53.13 E-value=9.8 Score=27.78 Aligned_cols=26 Identities=15% Similarity=0.446 Sum_probs=22.3
Q ss_pred eEEEEEEECCCCCCeE----------------EEEEEECCCh
Q psy2600 16 IQLKVVLLGDPSCGKI----------------VIFMYDITSG 41 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~----------------~i~v~d~~~~ 41 (158)
+.-++.++|..|+||| -+++||+...
T Consensus 22 ~~~H~~I~G~TGsGKS~~~~~ll~~l~~~~~~~~ii~D~~GE 63 (229)
T PF01935_consen 22 FNRHIAIFGTTGSGKSNTVKVLLEELLKKKGAKVIIFDPHGE 63 (229)
T ss_pred ccceEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEcCCCc
Confidence 4678999999999998 6799998764
No 427
>PF12846 AAA_10: AAA-like domain
Probab=52.85 E-value=11 Score=28.27 Aligned_cols=21 Identities=24% Similarity=0.589 Sum_probs=18.0
Q ss_pred EEEEECCCCCCeE---------------EEEEEECC
Q psy2600 19 KVVLLGDPSCGKI---------------VIFMYDIT 39 (158)
Q Consensus 19 ki~~~G~~~vgk~---------------~i~v~d~~ 39 (158)
.++++|.+|+||| .++++|..
T Consensus 3 h~~i~G~tGsGKT~~~~~l~~~~~~~g~~~~i~D~~ 38 (304)
T PF12846_consen 3 HTLILGKTGSGKTTLLKNLLEQLIRRGPRVVIFDPK 38 (304)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHcCCCEEEEcCC
Confidence 5789999999999 77788876
No 428
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=52.70 E-value=62 Score=21.65 Aligned_cols=42 Identities=12% Similarity=0.092 Sum_probs=24.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
|.++++.+.+ ..++......++.+.+.... .++.+|.|+++-
T Consensus 68 D~vviv~~~~-~~s~~~~~~~l~~l~~~~~~---~~~~lVvN~~~~ 109 (139)
T cd02038 68 DEVIVVTTPE-PTSITDAYALIKKLAKQLRV---LNFRVVVNRAES 109 (139)
T ss_pred CeEEEEcCCC-hhHHHHHHHHHHHHHHhcCC---CCEEEEEeCCCC
Confidence 4477777664 44555544445555432221 567789999874
No 429
>PRK13507 formate--tetrahydrofolate ligase; Provisional
Probab=52.39 E-value=1.2e+02 Score=26.07 Aligned_cols=69 Identities=9% Similarity=-0.058 Sum_probs=44.5
Q ss_pred HhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCC---CCCHHHHHHHHHHHHH
Q psy2600 44 FHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSART---GDNCWVNTRTPEINPL 120 (158)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~lf~~l~~~~~ 120 (158)
|.++...++.++++. +|+++..|+..-..+.+ .+..+++++..|..+. +|..+ |.|-.+|-+.+++.+.
T Consensus 387 ~~NL~~Hi~n~~~fg-----~pvVVaiN~F~~Dt~~E--i~~l~~~~~~~g~~~~-v~~~wa~GGeGa~eLA~~Vv~a~e 458 (587)
T PRK13507 387 CANLLHHIGTVKKSG-----INPVVCINAFYTDTHAE--IAIVRRLAEQAGARVA-VSRHWEKGGEGALELADAVIDACN 458 (587)
T ss_pred HHHHHHHHHHHHHcC-----CCeEEEeCCCCCCCHHH--HHHHHHHHHHcCCCEE-EechhhccchhHHHHHHHHHHHhh
Confidence 344555666666665 99999999997544333 3456677888887654 34444 4566667766666554
No 430
>PF05729 NACHT: NACHT domain
Probab=52.13 E-value=7.3 Score=26.32 Aligned_cols=12 Identities=33% Similarity=0.703 Sum_probs=11.2
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+++.|.+|+|||
T Consensus 3 l~I~G~~G~GKS 14 (166)
T PF05729_consen 3 LWISGEPGSGKS 14 (166)
T ss_pred EEEECCCCCChH
Confidence 689999999998
No 431
>PRK06620 hypothetical protein; Validated
Probab=52.10 E-value=41 Score=24.61 Aligned_cols=14 Identities=29% Similarity=0.577 Sum_probs=12.7
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+++.|.+|+|||
T Consensus 45 ~~l~l~Gp~G~GKT 58 (214)
T PRK06620 45 FTLLIKGPSSSGKT 58 (214)
T ss_pred ceEEEECCCCCCHH
Confidence 46899999999998
No 432
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=51.94 E-value=19 Score=29.57 Aligned_cols=15 Identities=27% Similarity=0.465 Sum_probs=12.9
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
..-++++|.+|+|||
T Consensus 95 p~vI~lvG~~GsGKT 109 (437)
T PRK00771 95 PQTIMLVGLQGSGKT 109 (437)
T ss_pred CeEEEEECCCCCcHH
Confidence 346889999999998
No 433
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=51.69 E-value=1.4e+02 Score=24.64 Aligned_cols=14 Identities=21% Similarity=0.444 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-++++|.+|+|||
T Consensus 100 ~vi~~vG~~GsGKT 113 (428)
T TIGR00959 100 TVILMVGLQGSGKT 113 (428)
T ss_pred EEEEEECCCCCcHH
Confidence 46889999999998
No 434
>PRK13343 F0F1 ATP synthase subunit alpha; Provisional
Probab=51.61 E-value=74 Score=26.78 Aligned_cols=54 Identities=19% Similarity=0.345 Sum_probs=32.5
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
++.++|..++||+ +++||-.-. +...++..+++.+.....- ...++|.+-.|.+
T Consensus 164 R~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~IG-er~rev~e~~~~l~~~~~l---~~tvvV~atsd~~ 231 (502)
T PRK13343 164 RELIIGDRQTGKTAIAIDAIINQKDSDVICVYVAIG-QKASAVARVIETLREHGAL---EYTTVVVAEASDP 231 (502)
T ss_pred EEEeeCCCCCCccHHHHHHHHhhcCCCEEEEEEEec-cChHHHHHHHHHHHhcCcc---ceeEEEEeccccc
Confidence 7889999999999 333444332 3445566667777644322 2345556666643
No 435
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=51.55 E-value=90 Score=24.04 Aligned_cols=54 Identities=15% Similarity=0.078 Sum_probs=32.7
Q ss_pred EEEEECCCCCCeE---------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI---------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~---------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|+.++|.+++||+ .+++|-.-. +..++...+++.+.....- ...++|.+..|.+
T Consensus 71 r~~If~~~G~GKTtLa~~i~~~i~~~~~~~~V~~~iG-er~~Ev~e~~~~~~~~~~~---~~tvvv~~t~d~~ 139 (274)
T cd01133 71 KIGLFGGAGVGKTVLIMELINNIAKAHGGYSVFAGVG-ERTREGNDLYHEMKESGVL---SKTALVYGQMNEP 139 (274)
T ss_pred EEEEecCCCCChhHHHHHHHHHHHhcCCCEEEEEEec-cCcHHHHHHHHHHHhcCCc---ceeEEEEECCCCC
Confidence 7889999999998 122222222 3444555666666643321 3457778888865
No 436
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=51.22 E-value=73 Score=26.56 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=27.0
Q ss_pred CCeEEEEEEECCChhHHhh-HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHS-IPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
..|++|.|+|+... .+. ..+..+-.+... +||+-..||.|-..
T Consensus 104 AvDsAvMVIDaAKG--iE~qT~KLfeVcrlR~-----iPI~TFiNKlDR~~ 147 (528)
T COG4108 104 AVDSAVMVIDAAKG--IEPQTLKLFEVCRLRD-----IPIFTFINKLDREG 147 (528)
T ss_pred hhheeeEEEecccC--ccHHHHHHHHHHhhcC-----CceEEEeecccccc
Confidence 34679999998752 111 122333333222 99999999999754
No 437
>KOG0459|consensus
Probab=50.96 E-value=28 Score=28.53 Aligned_cols=88 Identities=18% Similarity=0.160 Sum_probs=50.4
Q ss_pred EECCCCCCeEEEEEEECCC---hhHHhh---HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc---cHH---HHHHH
Q psy2600 22 LLGDPSCGKIVIFMYDITS---GQSFHS---IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV---TLE---RHAKL 89 (158)
Q Consensus 22 ~~G~~~vgk~~i~v~d~~~---~~s~~~---~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~---~~~---~~~~~ 89 (158)
++|.++-+|..++|.++-. ...|+. .+.-....+... - ..+|++.||.|-+..... ..+ ....+
T Consensus 174 mI~GasqAD~~vLvisar~gefetgFerGgQTREha~Lakt~g-v---~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~f 249 (501)
T KOG0459|consen 174 MIGGASQADLAVLVISARKGEFETGFEKGGQTREHAMLAKTAG-V---KHLIVLINKMDDPTVNWSNERYEECKEKLQPF 249 (501)
T ss_pred hccccchhhhhhhhhhhhhchhhcccccccchhHHHHHHHhhc-c---ceEEEEEEeccCCccCcchhhHHHHHHHHHHH
Confidence 5778888888888887622 223332 122222222111 1 568999999997642221 111 12223
Q ss_pred HHHhC------CeEEEEeCCCCCCHHHHHH
Q psy2600 90 AQSLH------LHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 90 ~~~~~------~~~~~~Sa~~~~~i~~lf~ 113 (158)
.+..| ..|+.+|..+|.++.+...
T Consensus 250 Lr~~g~n~~~d~~f~p~sg~tG~~~k~~~~ 279 (501)
T KOG0459|consen 250 LRKLGFNPKPDKHFVPVSGLTGANVKDRTD 279 (501)
T ss_pred HHHhcccCCCCceeeecccccccchhhccc
Confidence 33333 4589999999999887664
No 438
>PHA00729 NTP-binding motif containing protein
Probab=50.28 E-value=9 Score=28.55 Aligned_cols=14 Identities=29% Similarity=0.639 Sum_probs=13.0
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+++.|.+|+|||
T Consensus 18 ~nIlItG~pGvGKT 31 (226)
T PHA00729 18 VSAVIFGKQGSGKT 31 (226)
T ss_pred EEEEEECCCCCCHH
Confidence 48999999999999
No 439
>PLN02390 molybdopterin synthase catalytic subunit
Probab=50.02 E-value=48 Score=21.78 Aligned_cols=36 Identities=14% Similarity=0.254 Sum_probs=27.5
Q ss_pred EECCCCCCeEEEEEEECC--ChhHHhhHHHHHHHHhhh
Q psy2600 22 LLGDPSCGKIVIFMYDIT--SGQSFHSIPTWVDLFHLN 57 (158)
Q Consensus 22 ~~G~~~vgk~~i~v~d~~--~~~s~~~~~~~~~~~~~~ 57 (158)
=+|...+|++.+++.-.+ ..+.|+..+..+++++..
T Consensus 60 R~G~l~vge~~v~v~v~s~HR~~Af~A~~~~id~lK~~ 97 (111)
T PLN02390 60 RLGPVPVGETSVFVAVSSVHRADALDACKFLIDELKAS 97 (111)
T ss_pred eeecccCCCEEEEEEEECCCHHHHHHHHHHHHHHHhhc
Confidence 479999999977665544 356898888888888855
No 440
>PRK04195 replication factor C large subunit; Provisional
Probab=49.80 E-value=1.2e+02 Score=25.17 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=30.7
Q ss_pred EEEEEECCCCCCeE------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 18 LKVVLLGDPSCGKI------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 18 ~ki~~~G~~~vgk~------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
-.+++.|.+|+||+ -++.++.++..+.+.+..++........-....+.+|+..-+|.
T Consensus 40 ~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~ 109 (482)
T PRK04195 40 KALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTADVIERVAGEAATSGSLFGARRKLILLDEVDG 109 (482)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccHHHHHHHHHHhhccCcccCCCCeEEEEecCcc
Confidence 45889999999998 24445555544444444444443322110000234555555664
No 441
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=49.67 E-value=86 Score=26.27 Aligned_cols=12 Identities=25% Similarity=0.573 Sum_probs=11.2
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+++.|..|+||+
T Consensus 43 ~Lf~GP~GtGKT 54 (484)
T PRK14956 43 YIFFGPRGVGKT 54 (484)
T ss_pred EEEECCCCCCHH
Confidence 689999999998
No 442
>PRK07165 F0F1 ATP synthase subunit alpha; Validated
Probab=49.59 E-value=79 Score=26.64 Aligned_cols=69 Identities=14% Similarity=0.184 Sum_probs=38.1
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHH
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLE 84 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~ 84 (158)
|+.++|+.++||+ +++||-.- .+...+...+++.++....-. ..++++++ .|-+-.+.....
T Consensus 145 R~~Ifg~~gtGKT~lal~~I~~q~~~dv~~V~~~I-Ger~~ev~~~~~~l~~~gal~--~tvvV~at-sd~~~~r~~ap~ 220 (507)
T PRK07165 145 RELIIGDRQTGKTHIALNTIINQKNTNVKCIYVAI-GQKRENLSRIYETLKEHDALK--NTIIIDAP-STSPYEQYLAPY 220 (507)
T ss_pred EEEeecCCCCCccHHHHHHHHHhcCCCeEEEEEEc-cCChHHHHHHHHHhhhcCcee--eeEEEEeC-CCCHHHHHHHHH
Confidence 7889999999999 44444433 234556666777777543221 34455444 473333333333
Q ss_pred HHHHHHH
Q psy2600 85 RHAKLAQ 91 (158)
Q Consensus 85 ~~~~~~~ 91 (158)
.+...++
T Consensus 221 ~a~tiAE 227 (507)
T PRK07165 221 VAMAHAE 227 (507)
T ss_pred HHHHHHH
Confidence 3334444
No 443
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=49.37 E-value=29 Score=25.69 Aligned_cols=15 Identities=27% Similarity=0.505 Sum_probs=13.3
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
..++++.|.+|+|||
T Consensus 12 ~~~~liyG~~G~GKt 26 (220)
T TIGR01618 12 PNMYLIYGKPGTGKT 26 (220)
T ss_pred CcEEEEECCCCCCHH
Confidence 356999999999998
No 444
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=49.37 E-value=47 Score=24.13 Aligned_cols=13 Identities=23% Similarity=0.427 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+||+
T Consensus 44 ~~~l~G~~G~GKT 56 (227)
T PRK08903 44 FFYLWGEAGSGRS 56 (227)
T ss_pred eEEEECCCCCCHH
Confidence 5899999999998
No 445
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=49.32 E-value=8.8 Score=24.55 Aligned_cols=13 Identities=31% Similarity=0.795 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+|||
T Consensus 4 ~~~l~G~~G~GKT 16 (148)
T smart00382 4 VILIVGPPGSGKT 16 (148)
T ss_pred EEEEECCCCCcHH
Confidence 5789999999998
No 446
>PRK05339 PEP synthetase regulatory protein; Provisional
Probab=49.04 E-value=36 Score=26.12 Aligned_cols=36 Identities=8% Similarity=-0.105 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 83 LERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
-..++.+.+++|++++.++.+ .|+|.=..+++.+..
T Consensus 229 l~~A~~l~~k~~~pvIdvT~k---SIEEtA~~Il~~~~~ 264 (269)
T PRK05339 229 LAEAERLFRREGIPVIDVTNK---SIEETAAKILEILGL 264 (269)
T ss_pred HHHHHHHHHHcCCCEEECCCC---cHHHHHHHHHHHHHh
Confidence 345677788889999987554 899988888876643
No 447
>COG4639 Predicted kinase [General function prediction only]
Probab=48.44 E-value=89 Score=22.17 Aligned_cols=12 Identities=50% Similarity=0.661 Sum_probs=11.1
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
++++|.+++||+
T Consensus 5 vvL~G~~~sGKs 16 (168)
T COG4639 5 VVLRGASGSGKS 16 (168)
T ss_pred EEEecCCCCchh
Confidence 678999999998
No 448
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=47.98 E-value=7.8 Score=25.80 Aligned_cols=13 Identities=46% Similarity=0.846 Sum_probs=11.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|+++|.+|+||+
T Consensus 1 ~vlL~G~~G~GKt 13 (139)
T PF07728_consen 1 PVLLVGPPGTGKT 13 (139)
T ss_dssp EEEEEESSSSSHH
T ss_pred CEEEECCCCCCHH
Confidence 3789999999998
No 449
>COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism]
Probab=47.98 E-value=29 Score=25.44 Aligned_cols=21 Identities=10% Similarity=-0.205 Sum_probs=15.1
Q ss_pred EEeCCCCCCHHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
.|||.+.+=|.|++.-+-+..
T Consensus 179 PTSALDPElVgEVLkv~~~LA 199 (256)
T COG4598 179 PTSALDPELVGEVLKVMQDLA 199 (256)
T ss_pred CcccCCHHHHHHHHHHHHHHH
Confidence 489998877777776665544
No 450
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=47.94 E-value=30 Score=27.74 Aligned_cols=43 Identities=14% Similarity=0.108 Sum_probs=27.7
Q ss_pred CcEEEEEEeCCCCC-CCccccHHHHHHHHHHhCCeEEEEeCCCC
Q psy2600 63 PTYVALVANKGDME-HQRVVTLERHAKLAQSLHLHSFAVSARTG 105 (158)
Q Consensus 63 ~~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (158)
-+|+++|+|+.|.. ....-..+....++...+..++.+||...
T Consensus 199 ~KP~i~v~N~~e~~~~~~~~~~~~i~~~~~~~~~~~i~~sa~~E 242 (364)
T PRK09601 199 AKPVLYVANVDEDDLADGNPYVKKVREIAAKEGAEVVVICAKIE 242 (364)
T ss_pred cCCeEEEEECCccccccccHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 48999999999852 11111223445565566888899998543
No 451
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=47.81 E-value=45 Score=24.57 Aligned_cols=52 Identities=15% Similarity=0.331 Sum_probs=32.2
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|+.++|.+++||+ ++++. - .+..+++..+++++.....- ...++|++..|.+
T Consensus 17 r~~I~g~~g~GKt~Ll~~i~~~~~~d~~V~~~--i-Ger~~Ev~~~~~~~~~~~~~---~~t~vv~~t~~~~ 82 (215)
T PF00006_consen 17 RIGIFGGAGVGKTVLLQEIANNQDADVVVYAL--I-GERGREVTEFIEELKGEGAL---ERTVVVAATSDEP 82 (215)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHCTTTEEEEEE--E-SECHHHHHHHHHHHHHTTGG---GGEEEEEEETTS-
T ss_pred EEEEEcCcccccchhhHHHHhcccccceeeee--c-cccchhHHHHHHHHhhcccc---cccccccccchhh
Confidence 7889999999998 33332 2 23455666777777643221 3346667777754
No 452
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=47.71 E-value=51 Score=26.36 Aligned_cols=15 Identities=27% Similarity=0.271 Sum_probs=13.0
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
--=+++.|..|+|||
T Consensus 62 ~~GlYl~G~vG~GKT 76 (362)
T PF03969_consen 62 PKGLYLWGPVGRGKT 76 (362)
T ss_pred CceEEEECCCCCchh
Confidence 345899999999999
No 453
>PRK09281 F0F1 ATP synthase subunit alpha; Validated
Probab=47.44 E-value=78 Score=26.62 Aligned_cols=54 Identities=24% Similarity=0.372 Sum_probs=34.1
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|+.++|..++||+ +++||-.- -+...+...+++.++....- ...++|.+-.|.+
T Consensus 164 r~~Ifg~~g~GKt~lal~~i~~~~~~dv~~V~~~I-Ger~~ev~e~~~~~~~~~~l---~~tvvv~atsd~p 231 (502)
T PRK09281 164 RELIIGDRQTGKTAIAIDTIINQKGKDVICIYVAI-GQKASTVAQVVRKLEEHGAM---EYTIVVAATASDP 231 (502)
T ss_pred EEEeecCCCCCchHHHHHHHHHhcCCCeEEEEEEe-cCChHHHHHHHHHHhhcCCc---cceEEEEeCCCCC
Confidence 7889999999999 33455443 23455666777777744322 2346666667654
No 454
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=47.40 E-value=7.1 Score=25.08 Aligned_cols=12 Identities=33% Similarity=0.670 Sum_probs=10.7
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
|++.|.+|+|||
T Consensus 1 I~i~G~~G~GKS 12 (107)
T PF00910_consen 1 IWIYGPPGIGKS 12 (107)
T ss_pred CEEECCCCCCHH
Confidence 578999999998
No 455
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=47.20 E-value=6.2 Score=27.20 Aligned_cols=13 Identities=46% Similarity=0.920 Sum_probs=9.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
||++.|.+++|||
T Consensus 1 rI~i~G~~stGKT 13 (163)
T PF13521_consen 1 RIVITGGPSTGKT 13 (163)
T ss_dssp -EEEE--TTSHHH
T ss_pred CEEEECCCCCCHH
Confidence 7899999999998
No 456
>PRK08181 transposase; Validated
Probab=47.18 E-value=37 Score=25.95 Aligned_cols=13 Identities=38% Similarity=0.777 Sum_probs=12.3
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+|||
T Consensus 108 nlll~Gp~GtGKT 120 (269)
T PRK08181 108 NLLLFGPPGGGKS 120 (269)
T ss_pred eEEEEecCCCcHH
Confidence 5999999999999
No 457
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=47.05 E-value=25 Score=28.44 Aligned_cols=14 Identities=29% Similarity=0.494 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-++++|..|+|||
T Consensus 175 ~vi~lvGptGvGKT 188 (388)
T PRK12723 175 RVFILVGPTGVGKT 188 (388)
T ss_pred eEEEEECCCCCCHH
Confidence 46889999999998
No 458
>PRK14530 adenylate kinase; Provisional
Probab=46.84 E-value=9.8 Score=27.64 Aligned_cols=13 Identities=46% Similarity=0.915 Sum_probs=12.4
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|+++|.+|+||+
T Consensus 5 ~I~i~G~pGsGKs 17 (215)
T PRK14530 5 RILLLGAPGAGKG 17 (215)
T ss_pred EEEEECCCCCCHH
Confidence 7899999999998
No 459
>COG2759 MIS1 Formyltetrahydrofolate synthetase [Nucleotide transport and metabolism]
Probab=46.76 E-value=1.1e+02 Score=25.62 Aligned_cols=72 Identities=13% Similarity=0.067 Sum_probs=47.3
Q ss_pred HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEE--EEeCCCCCCHHHHHHHHHHHHH
Q psy2600 43 SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSF--AVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 43 s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~--~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
.|.++...++.++++. +|+++..||.--..+. .....++++..+|.++. ++=++-+.|-.+|-+..+..+.
T Consensus 354 G~aNL~~Hi~Nikkfg-----vp~VVAIN~F~tDt~~--Ei~~i~~~~~~~gv~~~ls~vwakGg~Gg~eLA~kVv~~~~ 426 (554)
T COG2759 354 GFANLLKHIENIKKFG-----VPVVVAINKFPTDTEA--EIAAIEKLCEEHGVEVALSEVWAKGGEGGIELAKKVVEAIE 426 (554)
T ss_pred HHHHHHHHHHHHHHcC-----CCeEEEeccCCCCCHH--HHHHHHHHHHHcCCceeehhhhhccCccHHHHHHHHHHHHh
Confidence 3555556666777666 9999999998743322 23456778888886642 2334556777777777777665
Q ss_pred H
Q psy2600 121 K 121 (158)
Q Consensus 121 ~ 121 (158)
+
T Consensus 427 ~ 427 (554)
T COG2759 427 Q 427 (554)
T ss_pred C
Confidence 4
No 460
>PRK14532 adenylate kinase; Provisional
Probab=46.73 E-value=10 Score=26.71 Aligned_cols=13 Identities=38% Similarity=0.823 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+++++|.+|+||+
T Consensus 2 ~i~~~G~pGsGKs 14 (188)
T PRK14532 2 NLILFGPPAAGKG 14 (188)
T ss_pred EEEEECCCCCCHH
Confidence 6899999999998
No 461
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=46.73 E-value=11 Score=28.79 Aligned_cols=16 Identities=25% Similarity=0.594 Sum_probs=14.4
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
-.++++++|.+|+|||
T Consensus 117 ~~~~~~~vG~~nvGKS 132 (276)
T TIGR03596 117 RPIRAMIVGIPNVGKS 132 (276)
T ss_pred CCeEEEEECCCCCCHH
Confidence 3588999999999998
No 462
>PRK03839 putative kinase; Provisional
Probab=46.17 E-value=10 Score=26.56 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|+++|-+|+|||
T Consensus 2 ~I~l~G~pGsGKs 14 (180)
T PRK03839 2 IIAITGTPGVGKT 14 (180)
T ss_pred EEEEECCCCCCHH
Confidence 5899999999999
No 463
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=45.73 E-value=1.4e+02 Score=24.15 Aligned_cols=45 Identities=13% Similarity=0.136 Sum_probs=34.5
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
+.+++|.+.+ -.+.....+.+..+++.+... .+..+|.||.+...
T Consensus 241 d~iviv~e~s-l~slR~ak~lld~l~~~r~~~--~~p~lv~n~~~~~~ 285 (366)
T COG4963 241 DEIVIVAEPS-LASLRNAKELLDELKRLRPND--PKPILVLNRVGVPK 285 (366)
T ss_pred CeEEEEeccc-HHHHHHHHHHHHHHHHhCCCC--CCceEEeeecCCCC
Confidence 3488888764 457777788888888776665 77899999999754
No 464
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=45.37 E-value=10 Score=24.56 Aligned_cols=14 Identities=36% Similarity=0.688 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+||+
T Consensus 20 ~~v~i~G~~G~GKT 33 (151)
T cd00009 20 KNLLLYGPPGTGKT 33 (151)
T ss_pred CeEEEECCCCCCHH
Confidence 36889999999998
No 465
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=45.33 E-value=11 Score=28.79 Aligned_cols=16 Identities=25% Similarity=0.615 Sum_probs=14.4
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
-.++++++|.+|||||
T Consensus 120 ~~~~~~~~G~pnvGKS 135 (287)
T PRK09563 120 RAIRAMIIGIPNVGKS 135 (287)
T ss_pred CceEEEEECCCCCCHH
Confidence 4578999999999998
No 466
>KOG3859|consensus
Probab=45.25 E-value=38 Score=26.52 Aligned_cols=18 Identities=17% Similarity=0.379 Sum_probs=14.7
Q ss_pred cceEEEEEEECCCCCCeE
Q psy2600 14 YEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 14 ~~~~~ki~~~G~~~vgk~ 31 (158)
..|.+.|+-+|..|.||+
T Consensus 39 ~GF~FNilCvGETg~GKs 56 (406)
T KOG3859|consen 39 QGFCFNILCVGETGLGKS 56 (406)
T ss_pred cCceEEEEEeccCCccHH
Confidence 457788888888888887
No 467
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=45.21 E-value=8.9 Score=27.76 Aligned_cols=13 Identities=54% Similarity=0.902 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|+++|.+|+||+
T Consensus 1 rI~i~G~pGsGKs 13 (210)
T TIGR01351 1 RLVLLGPPGSGKG 13 (210)
T ss_pred CEEEECCCCCCHH
Confidence 5899999999998
No 468
>PRK14738 gmk guanylate kinase; Provisional
Probab=45.02 E-value=14 Score=26.80 Aligned_cols=16 Identities=38% Similarity=0.414 Sum_probs=12.9
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
...-++++|.+|+||+
T Consensus 12 ~~~~ivi~GpsG~GK~ 27 (206)
T PRK14738 12 KPLLVVISGPSGVGKD 27 (206)
T ss_pred CCeEEEEECcCCCCHH
Confidence 3455778899999998
No 469
>TIGR00962 atpA proton translocating ATP synthase, F1 alpha subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. The alpha-subunit contains a highly conserved adenine-specific noncatalytic nucleotide-binding domain. The conserved amino acid sequence is Gly-X-X-X-X-Gly-Lys. Proton translocating ATP synthase F1, alpha subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), B subunit.
Probab=44.75 E-value=1e+02 Score=25.97 Aligned_cols=54 Identities=22% Similarity=0.343 Sum_probs=33.4
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|+.++|..++||+ +++||-.- -+...++..+++.+.....- .-.++|.+-.|.+
T Consensus 163 r~~I~g~~g~GKt~Lal~~i~~~~~~dv~~V~~~I-Ger~rev~e~~~~~~~~~~l---~~tvvV~atsd~p 230 (501)
T TIGR00962 163 RELIIGDRQTGKTAVAIDTIINQKDSDVYCVYVAI-GQKASTVAQVVRKLEEHGAM---DYTIVVAATASDS 230 (501)
T ss_pred EEEeecCCCCCccHHHHHHHHhhcCCCeEEEEEEc-cCChHHHHHHHHHHHhcCcc---ceeEEEEecCCCC
Confidence 7889999999999 33344333 23455666677777644322 3346666666654
No 470
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=44.74 E-value=19 Score=27.35 Aligned_cols=26 Identities=12% Similarity=-0.309 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+++|..||.++.||..|++.+.+.++
T Consensus 240 ~Pv~~gsa~~~~Gv~~Lld~i~~~~P 265 (267)
T cd04169 240 TPVFFGSALNNFGVQELLDALVDLAP 265 (267)
T ss_pred EEEEecccccCcCHHHHHHHHHHHCC
Confidence 47899999999999999999988764
No 471
>PTZ00088 adenylate kinase 1; Provisional
Probab=44.69 E-value=11 Score=28.01 Aligned_cols=14 Identities=57% Similarity=0.935 Sum_probs=13.1
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.+++++|.+|+||+
T Consensus 7 mrIvl~G~PGsGK~ 20 (229)
T PTZ00088 7 LKIVLFGAPGVGKG 20 (229)
T ss_pred ceEEEECCCCCCHH
Confidence 57999999999998
No 472
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=43.90 E-value=39 Score=27.53 Aligned_cols=60 Identities=15% Similarity=0.008 Sum_probs=36.4
Q ss_pred cceEEEEEEECCCCCCeE------------EEEEEECCCh------hHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCC
Q psy2600 14 YEIQLKVVLLGDPSCGKI------------VIFMYDITSG------QSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGD 74 (158)
Q Consensus 14 ~~~~~ki~~~G~~~vgk~------------~i~v~d~~~~------~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~D 74 (158)
...-.-+.+.|.+|+||| -+++.+.... ++-..++..+....... ... .|.+|.++-+|
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~--aPcVLFIDEID 222 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKG--KMSCLFINDLD 222 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccC--CCeEEEEehhh
Confidence 344456788999999999 3455554321 23333444444444221 112 78999999999
Q ss_pred C
Q psy2600 75 M 75 (158)
Q Consensus 75 l 75 (158)
.
T Consensus 223 A 223 (413)
T PLN00020 223 A 223 (413)
T ss_pred h
Confidence 5
No 473
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=43.84 E-value=9.6 Score=26.82 Aligned_cols=13 Identities=46% Similarity=0.894 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|+++|.+|+||+
T Consensus 1 ~I~i~G~pGsGKs 13 (194)
T cd01428 1 RILLLGPPGSGKG 13 (194)
T ss_pred CEEEECCCCCCHH
Confidence 4899999999998
No 474
>PRK02496 adk adenylate kinase; Provisional
Probab=43.80 E-value=13 Score=26.12 Aligned_cols=14 Identities=36% Similarity=0.762 Sum_probs=12.9
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.+++++|.+++||+
T Consensus 2 ~~i~i~G~pGsGKs 15 (184)
T PRK02496 2 TRLIFLGPPGAGKG 15 (184)
T ss_pred eEEEEECCCCCCHH
Confidence 57999999999998
No 475
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=43.47 E-value=11 Score=30.20 Aligned_cols=14 Identities=43% Similarity=0.657 Sum_probs=13.3
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
+++.++|.+|+|||
T Consensus 3 ~~vgIVG~PNvGKS 16 (364)
T PRK09601 3 LKCGIVGLPNVGKS 16 (364)
T ss_pred cEEEEECCCCCCHH
Confidence 68999999999998
No 476
>PRK09602 translation-associated GTPase; Reviewed
Probab=43.21 E-value=12 Score=30.32 Aligned_cols=14 Identities=36% Similarity=0.764 Sum_probs=13.2
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
+|+.++|.+++|||
T Consensus 2 ~kigivG~pnvGKS 15 (396)
T PRK09602 2 ITIGLVGKPNVGKS 15 (396)
T ss_pred cEEEEECCCCCCHH
Confidence 58999999999998
No 477
>PRK06526 transposase; Provisional
Probab=43.19 E-value=43 Score=25.31 Aligned_cols=13 Identities=54% Similarity=0.928 Sum_probs=12.3
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.++++|.+|+|||
T Consensus 100 nlll~Gp~GtGKT 112 (254)
T PRK06526 100 NVVFLGPPGTGKT 112 (254)
T ss_pred eEEEEeCCCCchH
Confidence 6899999999999
No 478
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=43.02 E-value=21 Score=27.41 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=18.2
Q ss_pred EEEEECCCCCCeE---------------EEEEEECCC
Q psy2600 19 KVVLLGDPSCGKI---------------VIFMYDITS 40 (158)
Q Consensus 19 ki~~~G~~~vgk~---------------~i~v~d~~~ 40 (158)
|+.+.|..||||| =++++|.+-
T Consensus 2 ~ia~~gKGGVGKTTta~nLA~~La~~G~rVLlID~Dp 38 (290)
T CHL00072 2 KLAVYGKGGIGKSTTSCNISIALARRGKKVLQIGCDP 38 (290)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeccC
Confidence 6889999999998 577788753
No 479
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=42.98 E-value=1.5e+02 Score=22.64 Aligned_cols=52 Identities=10% Similarity=-0.030 Sum_probs=23.8
Q ss_pred cEEEEEEeCCCCC----------CCccccHHHHHHHHHHh---------CCeEEEEe-CCCCCCHHHHHHHH
Q psy2600 64 TYVALVANKGDME----------HQRVVTLERHAKLAQSL---------HLHSFAVS-ARTGDNCWVNTRTP 115 (158)
Q Consensus 64 ~piilv~nK~Dl~----------~~~~~~~~~~~~~~~~~---------~~~~~~~S-a~~~~~i~~lf~~l 115 (158)
.+..+|...+++. ....++.+....++..+ ..+.|.+. .-....++++.+.|
T Consensus 98 ~~~c~i~~~~~~e~~~~~N~~R~~~~~~~~e~i~~m~~RfE~P~~~nrWD~plf~i~~~~~~~~~~~I~~~l 169 (270)
T PF08433_consen 98 TTFCVIYCDCPLETCLQRNSKRPEPERYPEETIDDMIQRFEEPDPKNRWDSPLFTIDSSDEELPLEEIWNAL 169 (270)
T ss_dssp -EEEEEEEE--HHHHHHHHHHTT-S--S-HHHHHHHHHH---TTSS-GGGS-SEEEE-TTS---HHHHHHHH
T ss_pred CCEEEEEECCCHHHHHHhhhccCCCCCCCHHHHHHHHHHhcCCCCCCCccCCeEEEecCCCCCCHHHHHHHH
Confidence 7888888888862 12225566666666543 22345554 44444556666555
No 480
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=42.96 E-value=12 Score=21.91 Aligned_cols=12 Identities=25% Similarity=0.565 Sum_probs=10.0
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+++.|.+++||+
T Consensus 2 i~i~G~~gsGKs 13 (69)
T cd02019 2 IAITGGSGSGKS 13 (69)
T ss_pred EEEECCCCCCHH
Confidence 578899999985
No 481
>PRK13949 shikimate kinase; Provisional
Probab=42.60 E-value=13 Score=26.08 Aligned_cols=13 Identities=31% Similarity=0.595 Sum_probs=12.4
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|+++|-+++|||
T Consensus 3 ~I~liG~~GsGKs 15 (169)
T PRK13949 3 RIFLVGYMGAGKT 15 (169)
T ss_pred EEEEECCCCCCHH
Confidence 7999999999998
No 482
>PF13173 AAA_14: AAA domain
Probab=42.50 E-value=75 Score=20.77 Aligned_cols=24 Identities=21% Similarity=0.480 Sum_probs=17.9
Q ss_pred EEEECCCCCCeE----------E----EEEEECCChhH
Q psy2600 20 VVLLGDPSCGKI----------V----IFMYDITSGQS 43 (158)
Q Consensus 20 i~~~G~~~vgk~----------~----i~v~d~~~~~s 43 (158)
+++.|..++||| . ++.++.++...
T Consensus 5 ~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~ 42 (128)
T PF13173_consen 5 IILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRD 42 (128)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHH
Confidence 578999999999 3 56667766544
No 483
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=42.28 E-value=22 Score=27.05 Aligned_cols=26 Identities=8% Similarity=-0.257 Sum_probs=23.0
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+++|..||.++.||..|++.+.+.++
T Consensus 243 ~PV~~gSa~~~~Gi~~lld~i~~~~p 268 (270)
T cd01886 243 VPVLCGSAFKNKGVQPLLDAVVDYLP 268 (270)
T ss_pred EEEEeCcCCCCcCHHHHHHHHHHhcC
Confidence 57899999999999999999988764
No 484
>PRK08116 hypothetical protein; Validated
Probab=42.00 E-value=1.5e+02 Score=22.45 Aligned_cols=13 Identities=31% Similarity=0.519 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-+++.|.+|+|||
T Consensus 116 gl~l~G~~GtGKT 128 (268)
T PRK08116 116 GLLLWGSVGTGKT 128 (268)
T ss_pred eEEEECCCCCCHH
Confidence 4899999999998
No 485
>PF10551 MULE: MULE transposase domain; InterPro: IPR018289 This entry represents a domain found in Mutator-like elements (MULE)-encoded tranposases, some of which also contain a zinc-finger motif [, ]. This domain is also found in a transposase for the insertion sequence element IS256 in transposon Tn4001 [].
Probab=41.83 E-value=60 Score=19.72 Aligned_cols=37 Identities=14% Similarity=0.179 Sum_probs=28.8
Q ss_pred EEECCCCCCeEEEEEEECCChhHHhhHHHHHHHHhhh
Q psy2600 21 VLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLN 57 (158)
Q Consensus 21 ~~~G~~~vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~ 57 (158)
+++|-.+-|+++++.|-+...++.+.....++.++..
T Consensus 16 ~~~~~d~~~~~~~v~~~l~~~e~~~~~~~~l~~~~~~ 52 (93)
T PF10551_consen 16 IAVGIDGNGRGFPVAFALVSSESEESYEWFLEKLKEA 52 (93)
T ss_pred eEEEEcCCCCEEEEEEEEEcCCChhhhHHHHHHhhhc
Confidence 5889999999999999888877777776666666543
No 486
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=41.68 E-value=38 Score=26.37 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=15.9
Q ss_pred CcceEEEEEEECCCCCCeE
Q psy2600 13 NYEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 13 ~~~~~~ki~~~G~~~vgk~ 31 (158)
...-..++++.|..|+|||
T Consensus 19 ~~~~~~r~vL~G~~GsGKS 37 (309)
T PF10236_consen 19 KSSKNNRYVLTGERGSGKS 37 (309)
T ss_pred ccCCceEEEEECCCCCCHH
Confidence 3445679999999999999
No 487
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=41.67 E-value=1.7e+02 Score=26.77 Aligned_cols=12 Identities=25% Similarity=0.465 Sum_probs=10.7
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+++.|..|+||+
T Consensus 41 yLFtGPpGtGKT 52 (944)
T PRK14949 41 YLFTGTRGVGKT 52 (944)
T ss_pred EEEECCCCCCHH
Confidence 478999999998
No 488
>PF14784 ECIST_Cterm: C-terminal domain of the ECSIT protein
Probab=41.44 E-value=58 Score=21.99 Aligned_cols=37 Identities=16% Similarity=0.237 Sum_probs=22.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEE
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVAL 68 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piil 68 (158)
.||..-++...+-+.+..|+..+.+.++....+|+++
T Consensus 87 ti~Amc~tg~~~~~sL~~WI~~Lq~~NP~L~~ipV~F 123 (126)
T PF14784_consen 87 TIFAMCMTGTSDKDSLLSWIRGLQETNPNLAQIPVLF 123 (126)
T ss_pred eEEEEEeccCCCHHHHHHHHHHHHhhCCchhcceEEE
Confidence 3333334444444556679999998777655577665
No 489
>PLN02759 Formate--tetrahydrofolate ligase
Probab=41.30 E-value=2.4e+02 Score=24.52 Aligned_cols=69 Identities=9% Similarity=-0.030 Sum_probs=43.4
Q ss_pred HhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCC---CCCHHHHHHHHHHHH
Q psy2600 44 FHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSART---GDNCWVNTRTPEINP 119 (158)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~---~~~i~~lf~~l~~~~ 119 (158)
+.++...++.++++. +|+|+..|+..-..+.+ .+..++++...|. .+.. |..+ |.|-.+|-+.+++.+
T Consensus 436 ~~NL~~Hi~n~~~fg-----~pvVVaiN~F~~Dt~~E--i~~v~~~~~~~ga~~~~~-~~~wa~GGeGa~eLA~~Vv~a~ 507 (637)
T PLN02759 436 CVNLARHIENTKSYG-----VNVVVAINMFATDTEAE--LEAVRQAALAAGAFDAVL-CTHHAHGGKGAVDLGEAVQKAC 507 (637)
T ss_pred hhhHHHHHHHHHHcC-----CCeEEEecCCCCCCHHH--HHHHHHHHHHcCCCcEEE-echhhcccHHHHHHHHHHHHHH
Confidence 333445556666655 99999999998544332 3456778888884 5433 3333 556667777766655
Q ss_pred H
Q psy2600 120 L 120 (158)
Q Consensus 120 ~ 120 (158)
.
T Consensus 508 e 508 (637)
T PLN02759 508 E 508 (637)
T ss_pred h
Confidence 4
No 490
>KOG3079|consensus
Probab=41.24 E-value=18 Score=26.19 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=11.2
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
|+++|.+|+||+
T Consensus 11 ifVlGGPGsgKg 22 (195)
T KOG3079|consen 11 IFVLGGPGSGKG 22 (195)
T ss_pred EEEEcCCCCCcc
Confidence 689999999998
No 491
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=40.80 E-value=1e+02 Score=20.05 Aligned_cols=40 Identities=15% Similarity=0.145 Sum_probs=25.3
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKG 73 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~ 73 (158)
+...+|+|.+ .+..+.....+..++..+.. +|+.++.++-
T Consensus 38 ~i~avvi~~d-~~~~~~~~~ll~~i~~~~~~---iPVFl~~~~~ 77 (115)
T PF03709_consen 38 DIAAVVISWD-GEEEDEAQELLDKIRERNFG---IPVFLLAERD 77 (115)
T ss_dssp TEEEEEEECH-HHHHHHHHHHHHHHHHHSTT----EEEEEESCC
T ss_pred CeeEEEEEcc-cccchhHHHHHHHHHHhCCC---CCEEEEecCC
Confidence 3444555544 44555556788888876655 9999888855
No 492
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=40.74 E-value=18 Score=25.72 Aligned_cols=14 Identities=36% Similarity=0.703 Sum_probs=12.3
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+++.|.+|+|||
T Consensus 48 ~~l~l~G~~G~GKT 61 (178)
T PF01695_consen 48 ENLILYGPPGTGKT 61 (178)
T ss_dssp -EEEEEESTTSSHH
T ss_pred eEEEEEhhHhHHHH
Confidence 36999999999998
No 493
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=40.62 E-value=13 Score=25.95 Aligned_cols=12 Identities=50% Similarity=0.816 Sum_probs=11.1
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
++++|.+|+||+
T Consensus 2 i~i~G~pGsGKs 13 (183)
T TIGR01359 2 VFVLGGPGSGKG 13 (183)
T ss_pred EEEECCCCCCHH
Confidence 689999999998
No 494
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=40.52 E-value=69 Score=20.95 Aligned_cols=13 Identities=31% Similarity=0.590 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
|+++.|..++||+
T Consensus 1 ~i~~~GkgG~GKT 13 (116)
T cd02034 1 KIAITGKGGVGKT 13 (116)
T ss_pred CEEEECCCCCCHH
Confidence 4789999999998
No 495
>PRK05642 DNA replication initiation factor; Validated
Probab=40.48 E-value=86 Score=23.15 Aligned_cols=14 Identities=21% Similarity=0.368 Sum_probs=12.2
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+|||
T Consensus 46 ~~l~l~G~~G~GKT 59 (234)
T PRK05642 46 SLIYLWGKDGVGRS 59 (234)
T ss_pred CeEEEECCCCCCHH
Confidence 45789999999999
No 496
>PRK00279 adk adenylate kinase; Reviewed
Probab=40.47 E-value=15 Score=26.72 Aligned_cols=13 Identities=46% Similarity=0.905 Sum_probs=12.3
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|+++|.+++||+
T Consensus 2 ~I~v~G~pGsGKs 14 (215)
T PRK00279 2 RLILLGPPGAGKG 14 (215)
T ss_pred EEEEECCCCCCHH
Confidence 6999999999998
No 497
>PRK14528 adenylate kinase; Provisional
Probab=40.35 E-value=15 Score=26.16 Aligned_cols=14 Identities=29% Similarity=0.700 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-+++++|.+|+||+
T Consensus 2 ~~i~i~G~pGsGKt 15 (186)
T PRK14528 2 KNIIFMGPPGAGKG 15 (186)
T ss_pred cEEEEECCCCCCHH
Confidence 36899999999998
No 498
>KOG0726|consensus
Probab=40.09 E-value=1.2e+02 Score=24.10 Aligned_cols=28 Identities=18% Similarity=0.176 Sum_probs=17.2
Q ss_pred HHHHHHHhhhcC--CCCCcEEEEEEeCCCC
Q psy2600 48 PTWVDLFHLNRK--SSTPTYVALVANKGDM 75 (158)
Q Consensus 48 ~~~~~~~~~~~~--~~~~~piilv~nK~Dl 75 (158)
+..++.+.+.+. +..++.+|.+-|+++-
T Consensus 307 rtmLELLNQldGFdsrgDvKvimATnrie~ 336 (440)
T KOG0726|consen 307 RTMLELLNQLDGFDSRGDVKVIMATNRIET 336 (440)
T ss_pred HHHHHHHHhccCccccCCeEEEEecccccc
Confidence 345555554442 1224889999999984
No 499
>CHL00059 atpA ATP synthase CF1 alpha subunit
Probab=40.04 E-value=71 Score=26.74 Aligned_cols=54 Identities=26% Similarity=0.382 Sum_probs=32.9
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|+.++|..++||+ +++||-.-. +.-.++..+++.++....- ...++|.+-.|.+
T Consensus 143 R~~I~g~~g~GKt~Lal~~I~~q~~~dv~cV~~~IG-er~rev~e~~~~l~~~~~l---~~tvvV~atad~~ 210 (485)
T CHL00059 143 RELIIGDRQTGKTAVATDTILNQKGQNVICVYVAIG-QKASSVAQVVTTLQERGAM---EYTIVVAETADSP 210 (485)
T ss_pred EEEeecCCCCCHHHHHHHHHHhcccCCeEEEEEEec-CCchHHHHHHHHhhcccch---hceEEEEeCCCCC
Confidence 7889999999998 344444432 3445566677777643321 2345666666654
No 500
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=39.89 E-value=72 Score=23.69 Aligned_cols=16 Identities=38% Similarity=0.573 Sum_probs=12.2
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
-.+=|+++|-|..|||
T Consensus 11 ~kl~ivmVGLPArGKs 26 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKS 26 (222)
T ss_dssp --EEEEEESSTTSSHH
T ss_pred CCEEEEEECCCCCCHH
Confidence 3455788999999998
Done!