Query psy2600
Match_columns 158
No_of_seqs 122 out of 1029
Neff 9.2
Searched_HMMs 29240
Date Fri Aug 16 20:21:12 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2600.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2600hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dkx_A RAS-related protein RAB 99.9 9.1E-25 3.1E-29 159.7 12.7 89 32-122 89-177 (216)
2 3dz8_A RAS-related protein RAB 99.9 1.4E-21 4.6E-26 139.2 13.0 114 8-123 14-188 (191)
3 2ew1_A RAS-related protein RAB 99.9 2.4E-21 8E-26 139.8 13.3 118 4-123 13-191 (201)
4 2fu5_C RAS-related protein RAB 99.9 7.3E-21 2.5E-25 134.1 15.6 91 32-124 84-174 (183)
5 1zbd_A Rabphilin-3A; G protein 99.9 7.9E-21 2.7E-25 136.2 15.1 113 12-126 3-176 (203)
6 2hup_A RAS-related protein RAB 99.9 5.1E-21 1.8E-25 137.6 13.7 116 5-122 17-194 (201)
7 2oil_A CATX-8, RAS-related pro 99.9 8.3E-21 2.8E-25 135.1 14.4 119 3-123 11-190 (193)
8 2a5j_A RAS-related protein RAB 99.9 1.6E-20 5.5E-25 133.6 15.7 115 7-123 11-186 (191)
9 2o52_A RAS-related protein RAB 99.9 1.1E-20 3.8E-25 135.7 14.4 119 5-125 13-192 (200)
10 3tkl_A RAS-related protein RAB 99.9 1.6E-20 5.5E-25 133.5 15.1 110 12-123 11-181 (196)
11 2g3y_A GTP-binding protein GEM 99.9 4.9E-21 1.7E-25 139.4 12.6 89 32-122 115-204 (211)
12 3cbq_A GTP-binding protein REM 99.9 1.1E-20 3.7E-25 135.5 13.9 89 32-122 100-189 (195)
13 2gf9_A RAS-related protein RAB 99.9 2.8E-20 9.7E-25 132.0 14.9 113 9-123 14-187 (189)
14 3q85_A GTP-binding protein REM 99.8 3.6E-20 1.2E-24 128.7 13.4 88 32-121 79-167 (169)
15 3tw8_B RAS-related protein RAB 99.8 4.9E-20 1.7E-24 129.1 14.0 91 32-125 85-175 (181)
16 2bme_A RAB4A, RAS-related prot 99.8 5.1E-20 1.7E-24 129.9 14.0 91 32-124 86-176 (186)
17 3kkq_A RAS-related protein M-R 99.8 8.5E-20 2.9E-24 128.6 14.3 88 32-121 93-182 (183)
18 2nzj_A GTP-binding protein REM 99.8 6.1E-20 2.1E-24 128.1 13.4 90 32-123 81-171 (175)
19 1z08_A RAS-related protein RAB 99.8 3.7E-20 1.3E-24 128.6 11.9 88 32-121 82-169 (170)
20 1z0f_A RAB14, member RAS oncog 99.8 7.6E-20 2.6E-24 127.9 13.6 88 32-121 91-178 (179)
21 3q72_A GTP-binding protein RAD 99.8 3.5E-20 1.2E-24 128.4 11.7 89 32-122 76-165 (166)
22 2g6b_A RAS-related protein RAB 99.8 1.3E-19 4.4E-24 127.1 14.4 89 32-122 87-175 (180)
23 3ihw_A Centg3; RAS, centaurin, 99.8 1E-19 3.4E-24 129.2 13.6 109 12-122 15-181 (184)
24 2bcg_Y Protein YP2, GTP-bindin 99.8 1.3E-19 4.6E-24 130.1 14.3 90 32-123 84-173 (206)
25 2cjw_A GTP-binding protein GEM 99.8 9.2E-20 3.1E-24 130.3 13.3 89 32-122 84-173 (192)
26 2il1_A RAB12; G-protein, GDP, 99.8 1E-19 3.5E-24 129.7 13.1 109 11-121 20-190 (192)
27 3q3j_B RHO-related GTP-binding 99.8 3.8E-20 1.3E-24 134.4 10.7 89 32-123 102-205 (214)
28 1g16_A RAS-related protein SEC 99.8 1.7E-19 5.7E-24 125.2 13.5 88 32-122 79-166 (170)
29 2iwr_A Centaurin gamma 1; ANK 99.8 1.9E-19 6.6E-24 126.2 13.5 91 32-124 76-172 (178)
30 1z0j_A RAB-22, RAS-related pro 99.8 1.5E-19 5.1E-24 125.4 12.8 87 32-120 82-168 (170)
31 3bc1_A RAS-related protein RAB 99.8 2.7E-19 9.3E-24 126.5 14.3 92 32-125 97-189 (195)
32 2efe_B Small GTP-binding prote 99.8 2E-19 6.8E-24 126.2 13.3 89 32-122 88-176 (181)
33 1r2q_A RAS-related protein RAB 99.8 1.1E-19 3.8E-24 125.9 11.9 87 32-120 82-168 (170)
34 2fg5_A RAB-22B, RAS-related pr 99.8 8.3E-20 2.8E-24 130.1 11.4 88 32-121 99-186 (192)
35 2f7s_A C25KG, RAS-related prot 99.8 1.8E-19 6.1E-24 130.4 12.8 91 32-124 111-202 (217)
36 3c5c_A RAS-like protein 12; GD 99.8 9E-20 3.1E-24 129.6 10.9 88 32-121 95-186 (187)
37 3cpj_B GTP-binding protein YPT 99.8 1.1E-19 3.9E-24 132.4 11.6 90 32-123 89-178 (223)
38 2fn4_A P23, RAS-related protei 99.8 2.2E-19 7.5E-24 125.7 12.6 91 32-124 84-175 (181)
39 3reg_A RHO-like small GTPase; 99.8 2.2E-19 7.7E-24 127.8 12.1 88 32-122 98-189 (194)
40 3t5g_A GTP-binding protein RHE 99.8 2.3E-19 7.9E-24 126.1 11.6 90 32-123 81-171 (181)
41 2p5s_A RAS and EF-hand domain 99.8 1.9E-19 6.6E-24 128.9 11.3 88 32-121 104-197 (199)
42 1z2a_A RAS-related protein RAB 99.8 2.5E-19 8.7E-24 124.0 11.4 87 32-121 81-167 (168)
43 3oes_A GTPase rhebl1; small GT 99.8 1.5E-19 5.1E-24 129.7 10.5 90 32-123 99-189 (201)
44 2atx_A Small GTP binding prote 99.8 5.3E-19 1.8E-23 125.8 13.3 86 32-120 93-192 (194)
45 1ek0_A Protein (GTP-binding pr 99.8 2.9E-19 9.9E-24 123.8 11.2 87 32-120 79-168 (170)
46 4djt_A GTP-binding nuclear pro 99.8 2.9E-19 1E-23 129.4 11.5 90 32-123 88-177 (218)
47 1u8z_A RAS-related protein RAL 99.8 4.4E-19 1.5E-23 122.5 11.9 88 32-121 79-167 (168)
48 2hxs_A RAB-26, RAS-related pro 99.8 5.6E-19 1.9E-23 123.6 12.3 88 32-121 83-173 (178)
49 1c1y_A RAS-related protein RAP 99.8 7.9E-19 2.7E-23 121.4 12.8 87 32-120 78-166 (167)
50 2bov_A RAla, RAS-related prote 99.8 1.2E-18 4.2E-23 124.7 14.0 90 32-123 89-179 (206)
51 2a9k_A RAS-related protein RAL 99.8 8.7E-19 3E-23 123.3 12.8 90 32-123 93-183 (187)
52 3cph_A RAS-related protein SEC 99.8 1.7E-18 5.8E-23 124.6 14.5 90 32-124 96-185 (213)
53 3t1o_A Gliding protein MGLA; G 99.8 3.6E-19 1.2E-23 126.3 10.7 88 32-124 101-195 (198)
54 2atv_A RERG, RAS-like estrogen 99.8 9E-19 3.1E-23 125.0 12.7 89 32-122 102-192 (196)
55 3l0i_B RAS-related protein RAB 99.8 1.7E-20 5.7E-25 134.4 3.3 108 12-121 28-196 (199)
56 2y8e_A RAB-protein 6, GH09086P 99.8 8.4E-19 2.9E-23 122.5 11.7 87 32-120 90-176 (179)
57 1kao_A RAP2A; GTP-binding prot 99.8 8.9E-19 3.1E-23 120.8 11.1 88 32-121 78-166 (167)
58 1ky3_A GTP-binding protein YPT 99.8 3E-18 1E-22 120.0 13.4 89 32-122 85-179 (182)
59 1m7b_A RND3/RHOE small GTP-bin 99.8 6E-19 2.1E-23 124.7 9.8 87 32-121 82-183 (184)
60 4dsu_A GTPase KRAS, isoform 2B 99.8 4.6E-18 1.6E-22 119.9 14.2 90 32-124 79-169 (189)
61 2q3h_A RAS homolog gene family 99.8 1.9E-18 6.4E-23 123.6 12.1 89 32-123 95-197 (201)
62 2yc2_C IFT27, small RAB-relate 99.8 2.5E-18 8.6E-23 123.1 12.8 90 32-123 100-194 (208)
63 1gwn_A RHO-related GTP-binding 99.8 8.2E-19 2.8E-23 126.7 10.2 87 32-121 103-204 (205)
64 2erx_A GTP-binding protein DI- 99.8 1.3E-18 4.4E-23 120.7 10.9 89 32-120 78-166 (172)
65 1wms_A RAB-9, RAB9, RAS-relate 99.8 4.3E-18 1.5E-22 119.0 13.6 87 32-121 83-174 (177)
66 3gj0_A GTP-binding nuclear pro 99.8 7.7E-19 2.6E-23 127.6 10.1 112 6-122 4-176 (221)
67 1z06_A RAS-related protein RAB 99.8 2E-18 6.7E-23 122.5 11.7 87 32-120 97-187 (189)
68 2j1l_A RHO-related GTP-binding 99.8 2E-18 6.8E-23 125.1 11.7 88 32-122 109-210 (214)
69 3bwd_D RAC-like GTP-binding pr 99.8 6.2E-19 2.1E-23 123.8 8.4 86 32-120 83-180 (182)
70 4bas_A ADP-ribosylation factor 99.8 1.6E-18 5.6E-23 123.4 10.4 119 3-123 3-191 (199)
71 2j0v_A RAC-like GTP-binding pr 99.8 1.3E-18 4.3E-23 125.6 9.9 89 32-123 84-182 (212)
72 1x3s_A RAS-related protein RAB 99.8 1.1E-17 3.6E-22 118.7 14.4 88 32-122 91-179 (195)
73 2gco_A H9, RHO-related GTP-bin 99.8 5.1E-18 1.8E-22 121.7 12.3 87 32-121 100-200 (201)
74 1vg8_A RAS-related protein RAB 99.8 8E-18 2.7E-22 120.6 13.0 89 32-123 84-177 (207)
75 2ce2_X GTPase HRAS; signaling 99.8 1.1E-17 3.6E-22 115.1 13.1 87 32-121 78-165 (166)
76 3con_A GTPase NRAS; structural 99.8 1.2E-17 4.1E-22 118.2 13.6 88 32-122 96-184 (190)
77 1mh1_A RAC1; GTP-binding, GTPa 99.8 3.4E-18 1.2E-22 120.2 10.1 87 32-121 80-180 (186)
78 3clv_A RAB5 protein, putative; 99.8 2.4E-17 8.2E-22 117.1 14.4 89 29-122 117-205 (208)
79 2fv8_A H6, RHO-related GTP-bin 99.8 8.1E-18 2.8E-22 121.1 11.3 88 32-122 100-201 (207)
80 4gzl_A RAS-related C3 botulinu 99.7 4E-18 1.4E-22 122.7 8.9 85 32-119 105-203 (204)
81 2gf0_A GTP-binding protein DI- 99.7 1.2E-17 4.2E-22 118.8 11.0 90 32-122 83-172 (199)
82 1r8s_A ADP-ribosylation factor 99.7 4.9E-18 1.7E-22 117.3 6.6 86 32-121 71-162 (164)
83 2f9l_A RAB11B, member RAS onco 99.7 2.5E-16 8.7E-21 112.6 14.8 90 32-123 81-170 (199)
84 3llu_A RAS-related GTP-binding 99.7 2.5E-17 8.6E-22 117.6 8.9 84 32-119 99-195 (196)
85 1f6b_A SAR1; gtpases, N-termin 99.7 4.5E-17 1.5E-21 116.7 9.4 84 32-119 96-197 (198)
86 2b6h_A ADP-ribosylation factor 99.7 1.3E-17 4.4E-22 118.9 6.4 85 32-120 100-190 (192)
87 1m2o_B GTP-binding protein SAR 99.7 3.9E-17 1.3E-21 116.2 8.8 83 32-118 94-189 (190)
88 1upt_A ARL1, ADP-ribosylation 99.7 2.8E-17 9.5E-22 114.1 7.8 86 32-121 78-169 (171)
89 1oix_A RAS-related protein RAB 99.7 3.2E-16 1.1E-20 111.6 13.2 110 8-119 20-190 (191)
90 2wkq_A NPH1-1, RAS-related C3 99.7 1.1E-16 3.7E-21 122.4 10.0 87 32-121 230-330 (332)
91 1zj6_A ADP-ribosylation factor 99.7 1.7E-16 6E-21 112.2 10.2 87 32-122 87-179 (187)
92 1zd9_A ADP-ribosylation factor 99.7 3.5E-17 1.2E-21 116.1 6.3 86 32-121 94-185 (188)
93 2x77_A ADP-ribosylation factor 99.7 3.9E-17 1.3E-21 115.6 6.5 87 32-122 93-185 (189)
94 1fzq_A ADP-ribosylation factor 99.7 7.7E-17 2.6E-21 113.8 7.9 86 32-121 87-178 (181)
95 2zej_A Dardarin, leucine-rich 99.7 5.4E-17 1.8E-21 114.8 6.9 90 30-122 81-179 (184)
96 2h57_A ADP-ribosylation factor 99.7 2.9E-16 9.9E-21 111.3 10.7 86 32-121 94-187 (190)
97 3th5_A RAS-related C3 botulinu 99.5 3.3E-18 1.1E-22 122.7 0.0 85 32-119 105-203 (204)
98 2h17_A ADP-ribosylation factor 99.7 3.7E-17 1.3E-21 115.2 4.9 83 32-118 92-180 (181)
99 1ksh_A ARF-like protein 2; sma 99.7 5.8E-16 2E-20 109.2 10.9 87 32-122 89-181 (186)
100 1moz_A ARL1, ADP-ribosylation 99.7 9.2E-17 3.1E-21 112.8 6.5 87 32-122 89-181 (183)
101 2qu8_A Putative nucleolar GTP- 99.7 1E-15 3.5E-20 111.8 11.2 89 32-123 112-207 (228)
102 3lvq_E ARF-GAP with SH3 domain 99.6 3.9E-16 1.4E-20 126.1 6.4 90 32-125 393-488 (497)
103 3o47_A ADP-ribosylation factor 99.6 4.9E-16 1.7E-20 119.8 6.4 86 32-121 236-327 (329)
104 2wji_A Ferrous iron transport 99.6 8.7E-16 3E-20 106.7 6.1 81 30-119 83-163 (165)
105 3r7w_A Gtpase1, GTP-binding pr 99.6 3.4E-15 1.2E-19 114.1 8.5 86 30-119 82-179 (307)
106 3c5h_A Glucocorticoid receptor 99.6 1E-14 3.5E-19 108.6 8.1 88 29-120 163-254 (255)
107 3r7w_B Gtpase2, GTP-binding pr 99.5 2.4E-15 8.4E-20 115.5 4.3 104 15-122 45-175 (331)
108 2cxx_A Probable GTP-binding pr 99.5 1.4E-14 4.7E-19 102.1 7.7 86 32-122 83-185 (190)
109 2wjg_A FEOB, ferrous iron tran 99.5 8.5E-15 2.9E-19 103.2 5.7 82 32-122 89-170 (188)
110 2gj8_A MNME, tRNA modification 99.5 2E-15 6.8E-20 105.8 1.5 82 30-121 85-166 (172)
111 2fh5_B SR-beta, signal recogni 99.5 1.4E-13 4.8E-18 99.0 11.0 84 32-118 82-213 (214)
112 3dpu_A RAB family protein; roc 99.5 2.9E-14 1E-18 116.3 8.0 85 32-122 125-209 (535)
113 3a1s_A Iron(II) transport prot 99.5 3.5E-14 1.2E-18 106.0 7.1 80 32-120 87-166 (258)
114 3pqc_A Probable GTP-binding pr 99.5 5.8E-14 2E-18 99.1 7.8 82 32-121 108-194 (195)
115 2lkc_A Translation initiation 99.5 1.9E-13 6.6E-18 95.2 10.1 82 32-122 82-172 (178)
116 1svi_A GTP-binding protein YSX 99.5 7.1E-14 2.4E-18 99.0 7.7 82 32-120 109-194 (195)
117 3iev_A GTP-binding protein ERA 99.5 3.6E-13 1.2E-17 102.9 11.2 85 32-121 96-182 (308)
118 2dyk_A GTP-binding protein; GT 99.5 6.1E-14 2.1E-18 96.1 6.1 78 30-119 81-160 (161)
119 2e87_A Hypothetical protein PH 99.5 4.3E-13 1.5E-17 104.3 10.4 86 32-122 250-337 (357)
120 1lnz_A SPO0B-associated GTP-bi 99.5 1.1E-13 3.8E-18 107.2 7.0 86 32-121 240-330 (342)
121 3b1v_A Ferrous iron uptake tra 99.4 8.6E-14 3E-18 104.7 6.0 82 30-120 82-163 (272)
122 3qq5_A Small GTP-binding prote 99.4 3.8E-14 1.3E-18 112.6 3.6 110 3-122 20-197 (423)
123 1u0l_A Probable GTPase ENGC; p 99.4 3.2E-13 1.1E-17 102.9 8.4 82 29-117 85-169 (301)
124 2hjg_A GTP-binding protein ENG 99.4 8.9E-13 3E-17 105.1 10.7 85 32-122 261-350 (436)
125 4dcu_A GTP-binding protein ENG 99.4 1.4E-12 4.7E-17 104.6 10.7 85 32-122 281-370 (456)
126 3i8s_A Ferrous iron transport 99.4 8.9E-14 3.1E-18 104.6 2.4 81 32-121 89-169 (274)
127 1nrj_B SR-beta, signal recogni 99.4 2.6E-13 8.8E-18 97.9 4.6 74 32-107 86-170 (218)
128 3gee_A MNME, tRNA modification 99.4 3E-12 1E-16 103.1 10.9 82 32-120 316-397 (476)
129 4dhe_A Probable GTP-binding pr 99.4 1.4E-12 4.7E-17 94.3 7.0 85 32-122 119-212 (223)
130 1cip_A Protein (guanine nucleo 99.3 1.5E-12 5E-17 101.3 7.0 106 15-122 192-345 (353)
131 3iby_A Ferrous iron transport 99.3 2.9E-13 9.8E-18 101.0 2.4 80 30-118 85-164 (256)
132 3k53_A Ferrous iron transport 99.3 1.3E-12 4.5E-17 97.8 5.2 83 32-122 85-167 (271)
133 2yv5_A YJEQ protein; hydrolase 99.3 5.3E-12 1.8E-16 96.2 8.2 82 30-116 81-164 (302)
134 2xtz_A Guanine nucleotide-bind 99.3 7.9E-12 2.7E-16 97.2 7.9 108 14-123 181-347 (354)
135 1zcb_A G alpha I/13; GTP-bindi 99.3 1.4E-11 4.7E-16 96.1 8.1 107 15-123 200-355 (362)
136 1azs_C GS-alpha; complex (lyas 99.2 1.8E-11 6.1E-16 96.5 7.6 107 15-123 216-387 (402)
137 1mky_A Probable GTP-binding pr 99.2 4.7E-11 1.6E-15 95.2 9.8 85 32-122 267-356 (439)
138 1xzp_A Probable tRNA modificat 99.2 2.9E-11 9.8E-16 97.6 8.0 79 32-121 327-405 (482)
139 3sjy_A Translation initiation 99.2 4E-11 1.4E-15 94.6 8.5 88 30-122 100-193 (403)
140 3geh_A MNME, tRNA modification 99.2 3.1E-11 1E-15 96.9 7.0 79 32-122 307-385 (462)
141 1mky_A Probable GTP-binding pr 99.2 5.5E-11 1.9E-15 94.8 8.1 79 32-122 85-167 (439)
142 1wf3_A GTP-binding protein; GT 99.2 3.4E-11 1.2E-15 91.7 6.3 80 32-120 90-172 (301)
143 3ohm_A Guanine nucleotide-bind 99.2 3E-11 1E-15 92.9 6.0 106 15-122 166-319 (327)
144 2qtf_A Protein HFLX, GTP-bindi 99.1 3.3E-10 1.1E-14 88.4 10.7 89 32-122 261-355 (364)
145 2hjg_A GTP-binding protein ENG 99.1 6.6E-11 2.3E-15 94.3 5.1 79 32-121 86-165 (436)
146 3cb4_D GTP-binding protein LEP 99.1 1.6E-09 5.4E-14 89.5 11.6 87 28-122 94-183 (599)
147 1ega_A Protein (GTP-binding pr 99.0 8.3E-10 2.8E-14 84.0 8.8 83 31-120 91-174 (301)
148 4fid_A G protein alpha subunit 99.0 3.2E-10 1.1E-14 87.6 6.3 105 15-121 160-328 (340)
149 2ywe_A GTP-binding protein LEP 99.0 2.4E-09 8.2E-14 88.4 10.6 87 28-122 96-185 (600)
150 1wb1_A Translation elongation 98.9 4E-09 1.4E-13 85.1 9.4 81 32-121 100-189 (482)
151 2qag_A Septin-2, protein NEDD5 98.9 2.4E-10 8.2E-15 89.1 2.1 82 34-122 149-234 (361)
152 3lxx_A GTPase IMAP family memb 98.9 8.9E-09 3E-13 75.3 9.5 88 32-121 116-214 (239)
153 2elf_A Protein translation elo 98.9 3E-09 1E-13 83.2 7.1 83 32-122 87-181 (370)
154 3tr5_A RF-3, peptide chain rel 98.9 9.5E-09 3.2E-13 83.7 10.3 40 32-77 109-148 (528)
155 1udx_A The GTP-binding protein 98.9 2.7E-09 9.4E-14 84.5 6.8 90 30-122 237-326 (416)
156 2xtp_A GTPase IMAP family memb 98.9 1.9E-09 6.4E-14 79.9 5.4 87 32-121 109-208 (260)
157 3p26_A Elongation factor 1 alp 98.9 1.4E-08 4.7E-13 81.9 10.0 76 32-111 138-228 (483)
158 2ged_A SR-beta, signal recogni 98.9 1.3E-08 4.5E-13 71.5 8.7 47 32-80 122-173 (193)
159 3t5d_A Septin-7; GTP-binding p 98.8 1.5E-09 5E-14 81.4 3.7 57 64-120 145-203 (274)
160 4dcu_A GTP-binding protein ENG 98.8 3.4E-09 1.2E-13 84.8 5.8 79 32-121 106-185 (456)
161 3izy_P Translation initiation 98.8 9.1E-10 3.1E-14 89.8 1.3 82 32-120 79-167 (537)
162 3h2y_A GTPase family protein; 98.8 1.7E-08 5.7E-13 78.8 8.0 81 30-119 71-158 (368)
163 1d2e_A Elongation factor TU (E 98.8 1.4E-08 4.7E-13 80.0 7.3 88 28-121 89-195 (397)
164 3j2k_7 ERF3, eukaryotic polype 98.8 4.9E-08 1.7E-12 77.9 9.9 77 32-113 122-217 (439)
165 1s0u_A EIF-2-gamma, translatio 98.7 4.2E-08 1.4E-12 77.5 9.3 86 28-121 104-198 (408)
166 3lxw_A GTPase IMAP family memb 98.7 5.9E-08 2E-12 71.6 9.1 89 32-122 109-209 (247)
167 2c78_A Elongation factor TU-A; 98.7 1.7E-08 5.8E-13 79.6 6.5 85 30-120 100-211 (405)
168 2qag_C Septin-7; cell cycle, c 98.7 8.4E-09 2.9E-13 81.8 4.3 81 34-120 142-226 (418)
169 1zun_B Sulfate adenylate trans 98.7 2.8E-08 9.7E-13 79.0 7.3 79 30-113 129-216 (434)
170 1jny_A EF-1-alpha, elongation 98.7 2.4E-08 8.1E-13 79.5 6.4 81 28-113 107-205 (435)
171 1pui_A ENGB, probable GTP-bind 98.7 5.8E-08 2E-12 69.1 7.5 58 64-121 138-199 (210)
172 3avx_A Elongation factor TS, e 98.7 8.9E-08 3E-12 83.8 9.4 86 30-121 384-486 (1289)
173 3izq_1 HBS1P, elongation facto 98.6 2E-08 6.9E-13 83.1 4.8 76 32-111 272-362 (611)
174 1kk1_A EIF2gamma; initiation o 98.6 7.1E-08 2.4E-12 76.2 7.6 86 28-121 106-200 (410)
175 3ec1_A YQEH GTPase; atnos1, at 98.6 3.5E-08 1.2E-12 77.0 5.6 81 30-119 73-160 (369)
176 3p32_A Probable GTPase RV1496/ 98.6 3.2E-08 1.1E-12 76.8 4.7 57 64-121 218-284 (355)
177 2dy1_A Elongation factor G; tr 98.6 1.9E-07 6.6E-12 78.0 9.4 29 95-123 248-276 (665)
178 1zo1_I IF2, translation initia 98.6 8.8E-09 3E-13 83.4 1.1 83 30-118 76-164 (501)
179 2wsm_A Hydrogenase expression/ 98.5 9.2E-08 3.1E-12 68.7 5.5 84 29-122 130-215 (221)
180 1f60_A Elongation factor EEF1A 98.5 1.1E-07 3.9E-12 76.1 4.8 79 28-111 108-202 (458)
181 1g7s_A Translation initiation 98.5 1.4E-06 4.8E-11 71.9 11.4 86 28-122 93-219 (594)
182 1puj_A YLQF, conserved hypothe 98.5 2E-07 6.9E-12 70.2 5.8 82 29-122 24-107 (282)
183 3mca_A HBS1, elongation factor 98.4 1.2E-07 4.2E-12 78.2 3.6 83 32-119 282-395 (592)
184 3l82_B F-box only protein 4; T 98.4 6.9E-07 2.4E-11 64.5 7.0 89 30-121 127-223 (227)
185 1dar_A EF-G, elongation factor 98.4 1.7E-06 5.8E-11 72.6 10.2 40 32-77 104-143 (691)
186 1r5b_A Eukaryotic peptide chai 98.4 1.6E-07 5.4E-12 75.5 3.3 84 27-112 143-243 (467)
187 2hf9_A Probable hydrogenase ni 98.4 3.7E-07 1.3E-11 65.7 4.6 55 67-121 168-224 (226)
188 2aka_B Dynamin-1; fusion prote 98.3 1.4E-07 4.7E-12 70.9 1.7 83 32-119 166-251 (299)
189 2qnr_A Septin-2, protein NEDD5 98.3 5E-07 1.7E-11 68.6 4.1 57 64-121 156-214 (301)
190 2h5e_A Peptide chain release f 98.2 1.2E-05 4E-10 65.6 10.7 27 96-122 253-279 (529)
191 2j69_A Bacterial dynamin-like 98.2 2.5E-06 8.5E-11 71.6 6.5 88 29-121 201-325 (695)
192 2xex_A Elongation factor G; GT 98.2 1.2E-05 4.2E-10 67.5 10.6 42 30-77 100-141 (693)
193 3def_A T7I23.11 protein; chlor 98.1 6E-06 2.1E-10 61.1 6.8 45 32-77 120-165 (262)
194 1h65_A Chloroplast outer envel 98.1 6.4E-06 2.2E-10 61.2 6.8 47 32-79 123-170 (270)
195 3l2o_B F-box only protein 4; s 98.1 3.7E-06 1.3E-10 63.5 5.1 87 30-121 212-308 (312)
196 1yrb_A ATP(GTP)binding protein 98.0 1.8E-05 6.1E-10 58.1 7.8 56 64-121 172-257 (262)
197 1t9h_A YLOQ, probable GTPase E 98.0 4.3E-06 1.5E-10 63.7 3.7 80 30-114 88-170 (307)
198 3cnl_A YLQF, putative uncharac 98.0 2.3E-06 7.9E-11 63.7 1.8 75 29-118 22-98 (262)
199 2p67_A LAO/AO transport system 97.9 1.6E-05 5.5E-10 61.2 5.8 84 28-121 169-261 (341)
200 3t34_A Dynamin-related protein 97.9 3.6E-06 1.2E-10 65.2 1.5 87 31-121 175-261 (360)
201 2rcn_A Probable GTPase ENGC; Y 97.8 9.6E-05 3.3E-09 57.4 8.7 77 30-114 132-212 (358)
202 1jwy_B Dynamin A GTPase domain 97.8 3.4E-05 1.2E-09 58.2 5.9 87 30-121 169-262 (315)
203 2www_A Methylmalonic aciduria 97.6 0.00011 3.8E-09 56.7 6.6 92 19-121 168-279 (349)
204 2rdo_7 EF-G, elongation factor 97.6 0.00031 1.1E-08 59.1 9.7 29 95-123 262-290 (704)
205 1wxq_A GTP-binding protein; st 97.5 7.8E-05 2.7E-09 58.6 3.8 45 64-113 215-262 (397)
206 2x2e_A Dynamin-1; nitration, h 97.4 8.4E-06 2.9E-10 63.0 -2.2 55 64-118 198-255 (353)
207 2qm8_A GTPase/ATPase; G protei 97.4 0.00036 1.2E-08 53.7 6.9 92 19-120 149-260 (337)
208 3vqt_A RF-3, peptide chain rel 97.3 0.0014 4.8E-08 53.6 9.2 44 28-77 123-166 (548)
209 1jal_A YCHF protein; nucleotid 97.3 0.0038 1.3E-07 48.5 11.3 41 64-104 200-240 (363)
210 3zvr_A Dynamin-1; hydrolase, D 96.8 0.00046 1.6E-08 58.5 2.6 82 30-118 189-275 (772)
211 3j25_A Tetracycline resistance 96.7 0.0016 5.6E-08 54.1 5.1 30 95-124 213-242 (638)
212 4a9a_A Ribosome-interacting GT 96.6 0.0081 2.8E-07 46.9 8.0 80 32-113 153-240 (376)
213 2qpt_A EH domain-containing pr 96.3 0.002 6.7E-08 52.7 3.0 44 30-78 190-233 (550)
214 4fn5_A EF-G 1, elongation fact 96.0 0.035 1.2E-06 46.6 8.9 27 96-122 266-292 (709)
215 1n0u_A EF-2, elongation factor 95.6 0.0091 3.1E-07 51.2 3.9 43 28-76 121-163 (842)
216 3sop_A Neuronal-specific septi 94.9 0.032 1.1E-06 41.3 4.6 14 64-77 141-154 (270)
217 3dm5_A SRP54, signal recogniti 93.5 0.15 5.3E-06 40.5 6.1 39 64-108 240-278 (443)
218 2dby_A GTP-binding protein; GD 92.8 0.048 1.6E-06 42.3 2.2 50 64-113 202-254 (368)
219 2j37_W Signal recognition part 90.0 0.29 9.8E-06 39.6 4.0 77 29-118 214-310 (504)
220 3e70_C DPA, signal recognition 84.2 2.3 7.8E-05 32.3 5.9 13 19-31 131-143 (328)
221 3c5h_A Glucocorticoid receptor 80.1 0.62 2.1E-05 33.7 1.4 22 12-33 14-44 (255)
222 1bif_A 6-phosphofructo-2-kinas 76.4 5.7 0.00019 31.4 6.1 16 16-31 38-53 (469)
223 3kl4_A SRP54, signal recogniti 72.8 6.7 0.00023 31.0 5.5 63 32-108 215-277 (433)
224 4a9a_A Ribosome-interacting GT 69.2 10 0.00035 29.3 5.7 51 64-121 250-300 (376)
225 4dzz_A Plasmid partitioning pr 65.1 14 0.00049 24.9 5.4 64 30-98 99-162 (206)
226 2qnr_A Septin-2, protein NEDD5 64.1 1.6 5.4E-05 32.6 0.3 18 14-31 15-32 (301)
227 2hf9_A Probable hydrogenase ni 63.6 2.1 7.2E-05 29.8 0.8 15 17-31 38-52 (226)
228 1j8m_F SRP54, signal recogniti 60.8 22 0.00077 26.2 6.1 66 30-110 214-280 (297)
229 2aka_B Dynamin-1; fusion prote 60.5 2.4 8.2E-05 30.9 0.7 18 14-31 23-40 (299)
230 1tq4_A IIGP1, interferon-induc 59.6 12 0.00042 29.2 4.6 59 64-122 176-254 (413)
231 2v3c_C SRP54, signal recogniti 56.8 28 0.00096 27.3 6.3 58 30-100 212-271 (432)
232 2qag_B Septin-6, protein NEDD5 56.6 5 0.00017 31.7 1.9 38 64-102 177-217 (427)
233 4b4t_L 26S protease subunit RP 53.2 23 0.00079 27.9 5.2 52 18-75 216-285 (437)
234 3h4m_A Proteasome-activating n 52.1 34 0.0011 24.4 5.8 13 19-31 53-65 (285)
235 2chg_A Replication factor C sm 52.1 26 0.00089 23.4 4.9 12 20-31 41-52 (226)
236 1ni3_A YCHF GTPase, YCHF GTP-b 51.0 20 0.0007 27.8 4.6 41 64-104 225-269 (392)
237 4b4t_J 26S protease regulatory 50.4 30 0.001 27.0 5.4 51 19-75 184-252 (405)
238 1wxq_A GTP-binding protein; st 49.4 4.2 0.00015 31.6 0.5 14 18-31 1-14 (397)
239 3zvl_A Bifunctional polynucleo 49.0 47 0.0016 25.7 6.4 13 19-31 260-272 (416)
240 3eie_A Vacuolar protein sortin 48.8 40 0.0014 24.8 5.8 14 18-31 52-65 (322)
241 1puj_A YLQF, conserved hypothe 48.8 5.2 0.00018 29.5 0.8 15 17-31 120-134 (282)
242 4b4t_M 26S protease regulatory 47.8 26 0.00089 27.6 4.8 52 18-75 216-285 (434)
243 3sr0_A Adenylate kinase; phosp 46.8 6.1 0.00021 27.7 0.9 13 19-31 2-14 (206)
244 2x2e_A Dynamin-1; nitration, h 45.7 5.8 0.0002 30.0 0.7 16 16-31 30-45 (353)
245 4b4t_K 26S protease regulatory 45.1 29 0.001 27.3 4.6 51 19-75 208-276 (428)
246 3cwq_A Para family chromosome 43.7 75 0.0026 21.7 7.5 63 29-98 91-153 (209)
247 4b4t_I 26S protease regulatory 42.2 37 0.0013 26.8 4.8 52 18-75 217-286 (437)
248 3kb2_A SPBC2 prophage-derived 40.6 7.7 0.00026 25.4 0.6 13 19-31 3-15 (173)
249 4b4t_H 26S protease regulatory 39.9 44 0.0015 26.7 4.9 53 18-76 244-314 (467)
250 3fb4_A Adenylate kinase; psych 39.7 9.1 0.00031 26.3 0.9 13 19-31 2-14 (216)
251 3dl0_A Adenylate kinase; phosp 39.5 9.2 0.00031 26.3 0.9 13 19-31 2-14 (216)
252 3umf_A Adenylate kinase; rossm 38.6 9 0.00031 27.1 0.7 12 20-31 32-43 (217)
253 1vma_A Cell division protein F 38.4 37 0.0013 25.2 4.2 13 19-31 106-118 (306)
254 3ea0_A ATPase, para family; al 38.3 94 0.0032 21.3 8.6 64 29-100 141-204 (245)
255 3t34_A Dynamin-related protein 37.8 9.1 0.00031 28.9 0.7 14 18-31 35-48 (360)
256 1jbk_A CLPB protein; beta barr 37.7 9.4 0.00032 25.0 0.7 13 19-31 45-57 (195)
257 3n70_A Transport activator; si 37.7 9.4 0.00032 24.6 0.7 14 18-31 25-38 (145)
258 3lw7_A Adenylate kinase relate 37.0 9.8 0.00033 24.7 0.7 13 19-31 3-15 (179)
259 1ly1_A Polynucleotide kinase; 35.8 11 0.00036 24.9 0.7 13 19-31 4-16 (181)
260 2dby_A GTP-binding protein; GD 35.5 7.1 0.00024 30.0 -0.2 14 18-31 2-15 (368)
261 1ye8_A Protein THEP1, hypothet 35.5 12 0.00041 25.3 1.0 13 19-31 2-14 (178)
262 3trf_A Shikimate kinase, SK; a 35.3 12 0.0004 24.9 0.9 13 19-31 7-19 (185)
263 3vaa_A Shikimate kinase, SK; s 34.4 13 0.00043 25.4 0.9 13 19-31 27-39 (199)
264 1kag_A SKI, shikimate kinase I 34.2 12 0.00039 24.6 0.7 13 19-31 6-18 (173)
265 3kl4_A SRP54, signal recogniti 33.8 33 0.0011 27.0 3.3 34 18-51 98-148 (433)
266 1kgd_A CASK, peripheral plasma 33.8 12 0.00041 25.1 0.7 13 19-31 7-19 (180)
267 2jaq_A Deoxyguanosine kinase; 33.4 13 0.00046 24.9 0.9 13 19-31 2-14 (205)
268 1qhx_A CPT, protein (chloramph 33.2 12 0.00042 24.6 0.7 13 19-31 5-17 (178)
269 1nks_A Adenylate kinase; therm 32.5 11 0.00038 25.0 0.4 13 19-31 3-15 (194)
270 1y63_A LMAJ004144AAA protein; 32.4 14 0.00048 24.8 0.9 13 19-31 12-24 (184)
271 2j69_A Bacterial dynamin-like 32.2 15 0.00051 30.7 1.2 16 16-31 68-83 (695)
272 1ko7_A HPR kinase/phosphatase; 32.1 29 0.00098 26.1 2.6 48 64-118 81-128 (314)
273 1cke_A CK, MSSA, protein (cyti 32.1 15 0.0005 25.4 1.0 14 18-31 6-19 (227)
274 1zp6_A Hypothetical protein AT 31.9 12 0.0004 25.1 0.4 13 19-31 11-23 (191)
275 2j37_W Signal recognition part 31.6 67 0.0023 25.8 4.8 15 17-31 101-115 (504)
276 2r8r_A Sensor protein; KDPD, P 31.5 16 0.00053 26.3 1.0 15 17-31 6-20 (228)
277 1e4v_A Adenylate kinase; trans 31.3 13 0.00045 25.6 0.6 13 19-31 2-14 (214)
278 2pt5_A Shikimate kinase, SK; a 31.3 16 0.00053 23.8 1.0 13 19-31 2-14 (168)
279 3do6_A Formate--tetrahydrofola 31.1 89 0.0031 25.3 5.3 68 44-119 346-416 (543)
280 2kjq_A DNAA-related protein; s 30.9 17 0.00059 23.7 1.1 13 19-31 38-50 (149)
281 1zcb_A G alpha I/13; GTP-bindi 30.9 16 0.00053 28.0 1.0 17 15-31 31-47 (362)
282 2qor_A Guanylate kinase; phosp 30.9 14 0.00048 25.2 0.7 13 19-31 14-26 (204)
283 3co5_A Putative two-component 30.7 10 0.00035 24.4 -0.1 13 19-31 29-41 (143)
284 3u61_B DNA polymerase accessor 30.6 1.1E+02 0.0036 22.2 5.6 13 19-31 49-62 (324)
285 2w58_A DNAI, primosome compone 30.6 14 0.00048 25.0 0.7 14 18-31 55-68 (202)
286 3cf4_G Acetyl-COA decarboxylas 30.6 68 0.0023 21.3 4.2 45 47-100 24-68 (170)
287 3cm0_A Adenylate kinase; ATP-b 30.6 16 0.00055 24.2 0.9 14 18-31 5-18 (186)
288 3t61_A Gluconokinase; PSI-biol 30.3 14 0.00049 25.0 0.6 13 19-31 20-32 (202)
289 2vli_A Antibiotic resistance p 30.2 17 0.00058 24.0 1.0 13 19-31 7-19 (183)
290 2p65_A Hypothetical protein PF 30.0 11 0.00038 24.6 0.0 13 19-31 45-57 (187)
291 1jjv_A Dephospho-COA kinase; P 29.7 17 0.00058 24.7 1.0 14 18-31 3-16 (206)
292 1lvg_A Guanylate kinase, GMP k 29.7 15 0.00052 25.1 0.7 13 19-31 6-18 (198)
293 3bos_A Putative DNA replicatio 29.6 15 0.00051 25.2 0.7 14 18-31 53-66 (242)
294 3ec2_A DNA replication protein 29.5 12 0.00042 24.9 0.2 13 19-31 40-52 (180)
295 1kht_A Adenylate kinase; phosp 29.5 15 0.00053 24.3 0.7 13 19-31 5-17 (192)
296 1uj2_A Uridine-cytidine kinase 29.4 17 0.00059 25.8 1.0 19 13-31 18-36 (252)
297 2rhm_A Putative kinase; P-loop 29.3 13 0.00046 24.7 0.4 14 18-31 6-19 (193)
298 3tlx_A Adenylate kinase 2; str 29.1 19 0.00066 25.5 1.2 14 18-31 30-43 (243)
299 2q5w_E Molybdopterin-convertin 29.0 45 0.0015 22.1 2.9 36 22-57 82-119 (149)
300 4gp7_A Metallophosphoesterase; 28.8 16 0.00055 24.3 0.7 12 20-31 12-23 (171)
301 1knq_A Gluconate kinase; ALFA/ 28.8 16 0.00054 24.1 0.6 13 19-31 10-22 (175)
302 2ohf_A Protein OLA1, GTP-bindi 28.6 13 0.00043 29.1 0.1 16 16-31 21-36 (396)
303 1aky_A Adenylate kinase; ATP:A 28.6 18 0.00062 24.9 1.0 14 18-31 5-18 (220)
304 1via_A Shikimate kinase; struc 28.5 14 0.00048 24.4 0.4 13 19-31 6-18 (175)
305 1wcv_1 SOJ, segregation protei 28.4 1.5E+02 0.0052 20.6 7.6 44 30-76 135-182 (257)
306 2iyv_A Shikimate kinase, SK; t 28.4 16 0.00056 24.2 0.7 13 19-31 4-16 (184)
307 1tev_A UMP-CMP kinase; ploop, 28.4 17 0.00057 24.2 0.7 14 18-31 4-17 (196)
308 3tau_A Guanylate kinase, GMP k 28.4 16 0.00056 25.1 0.7 12 20-31 11-22 (208)
309 2if2_A Dephospho-COA kinase; a 28.4 16 0.00056 24.7 0.7 13 19-31 3-15 (204)
310 1fm0_E Molybdopterin convertin 28.2 47 0.0016 22.1 2.9 35 23-57 85-121 (150)
311 3tr0_A Guanylate kinase, GMP k 28.0 17 0.00058 24.5 0.7 12 20-31 10-21 (205)
312 2j41_A Guanylate kinase; GMP, 28.0 17 0.00056 24.6 0.6 13 19-31 8-20 (207)
313 1e6c_A Shikimate kinase; phosp 27.9 17 0.0006 23.7 0.7 13 19-31 4-16 (173)
314 2plr_A DTMP kinase, probable t 27.7 21 0.00073 24.0 1.2 14 18-31 5-18 (213)
315 3iij_A Coilin-interacting nucl 27.7 17 0.00058 24.1 0.7 14 18-31 12-25 (180)
316 2v54_A DTMP kinase, thymidylat 27.3 18 0.00061 24.4 0.7 13 19-31 6-18 (204)
317 2qag_B Septin-6, protein NEDD5 27.1 23 0.00077 27.9 1.3 15 17-31 42-56 (427)
318 1qf9_A UMP/CMP kinase, protein 26.9 21 0.00071 23.6 1.0 14 18-31 7-20 (194)
319 2pbr_A DTMP kinase, thymidylat 26.8 18 0.00061 24.0 0.6 13 19-31 2-14 (195)
320 4eun_A Thermoresistant glucoki 26.8 18 0.00062 24.5 0.7 13 19-31 31-43 (200)
321 2qz4_A Paraplegin; AAA+, SPG7, 26.7 18 0.00063 25.3 0.7 14 18-31 40-53 (262)
322 2ale_A SNU13, NHP2/L7AE family 26.5 1.3E+02 0.0045 19.3 5.4 49 64-122 76-124 (134)
323 3uie_A Adenylyl-sulfate kinase 26.4 18 0.00063 24.5 0.7 13 19-31 27-39 (200)
324 1e9r_A Conjugal transfer prote 26.3 26 0.00089 27.0 1.6 25 16-40 52-91 (437)
325 2c95_A Adenylate kinase 1; tra 26.2 17 0.00058 24.3 0.4 13 19-31 11-23 (196)
326 1zuh_A Shikimate kinase; alpha 26.2 20 0.00067 23.4 0.7 14 18-31 8-21 (168)
327 2qpt_A EH domain-containing pr 26.1 18 0.00061 29.4 0.6 19 13-31 61-79 (550)
328 2cdn_A Adenylate kinase; phosp 26.1 19 0.00066 24.3 0.7 16 16-31 19-34 (201)
329 3szr_A Interferon-induced GTP- 26.1 72 0.0025 26.1 4.2 13 64-76 215-227 (608)
330 1ex7_A Guanylate kinase; subst 26.1 19 0.00066 24.7 0.7 12 20-31 4-15 (186)
331 2bdt_A BH3686; alpha-beta prot 25.9 19 0.00066 24.0 0.7 13 19-31 4-16 (189)
332 3b9q_A Chloroplast SRP recepto 25.8 67 0.0023 23.7 3.7 13 19-31 102-114 (302)
333 1zd8_A GTP:AMP phosphotransfer 25.6 19 0.00066 24.9 0.7 14 18-31 8-21 (227)
334 1ak2_A Adenylate kinase isoenz 25.4 22 0.00076 24.8 1.0 14 18-31 17-30 (233)
335 3lnc_A Guanylate kinase, GMP k 25.4 28 0.00095 24.2 1.5 13 19-31 29-41 (231)
336 2qgz_A Helicase loader, putati 25.1 22 0.00075 26.3 0.9 14 18-31 153-166 (308)
337 3ohm_A Guanine nucleotide-bind 25.1 26 0.0009 26.4 1.3 18 14-31 4-21 (327)
338 3syl_A Protein CBBX; photosynt 25.1 20 0.00068 26.0 0.7 15 17-31 67-81 (309)
339 3ney_A 55 kDa erythrocyte memb 25.1 21 0.00071 24.8 0.7 13 19-31 21-33 (197)
340 1ofh_A ATP-dependent HSL prote 25.0 20 0.0007 25.8 0.7 14 18-31 51-64 (310)
341 3a00_A Guanylate kinase, GMP k 24.8 20 0.0007 24.0 0.6 12 20-31 4-15 (186)
342 3pzx_A Formate--tetrahydrofola 24.7 35 0.0012 27.7 2.0 70 44-120 360-429 (557)
343 2bwj_A Adenylate kinase 5; pho 24.6 19 0.00064 24.1 0.4 14 18-31 13-26 (199)
344 3end_A Light-independent proto 24.6 2E+02 0.0067 20.6 8.7 62 29-99 180-242 (307)
345 2z0h_A DTMP kinase, thymidylat 24.6 21 0.00072 23.8 0.7 13 19-31 2-14 (197)
346 2bjv_A PSP operon transcriptio 24.6 21 0.00072 25.3 0.7 14 18-31 30-43 (265)
347 3a4m_A L-seryl-tRNA(SEC) kinas 24.5 21 0.00073 25.5 0.7 13 19-31 6-18 (260)
348 1ixz_A ATP-dependent metallopr 24.5 21 0.00073 25.1 0.7 12 20-31 52-63 (254)
349 1sxj_A Activator 1 95 kDa subu 24.3 1.5E+02 0.0053 23.4 5.8 14 18-31 78-91 (516)
350 2xb4_A Adenylate kinase; ATP-b 24.3 24 0.00082 24.5 0.9 13 19-31 2-14 (223)
351 1ukz_A Uridylate kinase; trans 24.3 26 0.0009 23.6 1.1 14 18-31 16-29 (203)
352 1cip_A Protein (guanine nucleo 24.2 28 0.00095 26.5 1.3 18 14-31 29-46 (353)
353 1lv7_A FTSH; alpha/beta domain 24.1 22 0.00074 25.1 0.7 14 18-31 46-59 (257)
354 3be4_A Adenylate kinase; malar 24.0 22 0.00074 24.5 0.7 14 18-31 6-19 (217)
355 2bbw_A Adenylate kinase 4, AK4 24.0 25 0.00084 24.8 1.0 13 19-31 29-41 (246)
356 1zak_A Adenylate kinase; ATP:A 23.9 19 0.00066 24.8 0.4 13 19-31 7-19 (222)
357 2xtz_A Guanine nucleotide-bind 23.8 34 0.0011 26.1 1.7 18 14-31 6-23 (354)
358 2wwf_A Thymidilate kinase, put 23.8 20 0.00067 24.3 0.4 13 19-31 12-24 (212)
359 2zay_A Response regulator rece 23.5 1.3E+02 0.0045 18.3 7.8 46 64-121 83-128 (147)
360 1njg_A DNA polymerase III subu 23.5 22 0.00077 24.0 0.6 13 19-31 47-59 (250)
361 3k9g_A PF-32 protein; ssgcid, 23.5 1.7E+02 0.0057 20.5 5.4 41 30-74 168-208 (267)
362 2qe7_A ATP synthase subunit al 23.3 83 0.0028 25.3 3.9 54 19-76 164-231 (502)
363 1f5n_A Interferon-induced guan 23.2 24 0.00083 29.0 0.9 16 16-31 37-52 (592)
364 3rpf_A Molybdopterin synthase 23.2 65 0.0022 21.4 2.8 37 21-57 80-118 (148)
365 2yvu_A Probable adenylyl-sulfa 23.0 24 0.00082 23.5 0.7 14 18-31 14-27 (186)
366 1d2n_A N-ethylmaleimide-sensit 22.9 23 0.0008 25.2 0.7 16 16-31 63-78 (272)
367 4ap8_A Molybdopterin synthase 22.9 54 0.0018 21.4 2.3 35 23-57 88-124 (135)
368 2wp4_A Molybdopterin-convertin 22.8 53 0.0018 21.8 2.3 37 22-58 90-128 (147)
369 1z6g_A Guanylate kinase; struc 22.6 24 0.00082 24.5 0.7 13 19-31 25-37 (218)
370 1rj9_A FTSY, signal recognitio 22.6 54 0.0018 24.2 2.6 13 19-31 104-116 (304)
371 1iqp_A RFCS; clamp loader, ext 22.5 1E+02 0.0035 22.1 4.2 13 19-31 48-60 (327)
372 3b9p_A CG5977-PA, isoform A; A 22.4 24 0.00081 25.5 0.6 14 18-31 55-68 (297)
373 4fid_A G protein alpha subunit 22.3 25 0.00087 26.7 0.8 16 16-31 4-19 (340)
374 2og2_A Putative signal recogni 22.3 84 0.0029 23.9 3.7 13 19-31 159-171 (359)
375 3pxg_A Negative regulator of g 22.0 29 0.00098 27.4 1.0 13 19-31 203-215 (468)
376 1nn5_A Similar to deoxythymidy 21.9 22 0.00077 24.0 0.4 13 19-31 11-23 (215)
377 3c8u_A Fructokinase; YP_612366 21.8 30 0.001 23.6 1.0 14 18-31 23-36 (208)
378 1znw_A Guanylate kinase, GMP k 21.8 26 0.00088 23.9 0.7 12 20-31 23-34 (207)
379 1gvn_B Zeta; postsegregational 21.7 27 0.00091 25.6 0.8 14 18-31 34-47 (287)
380 3bfv_A CAPA1, CAPB2, membrane 21.4 1.4E+02 0.0049 21.3 4.7 41 30-76 216-257 (271)
381 2ffh_A Protein (FFH); SRP54, s 21.1 99 0.0034 24.2 4.0 13 19-31 100-112 (425)
382 3t15_A Ribulose bisphosphate c 21.1 24 0.00082 25.8 0.4 14 18-31 37-50 (293)
383 4fcw_A Chaperone protein CLPB; 20.8 28 0.00094 25.2 0.7 14 18-31 48-61 (311)
384 3rl5_A Metallophosphoesterase 20.7 2E+02 0.0069 21.2 5.4 56 16-75 58-122 (296)
385 1l8q_A Chromosomal replication 20.6 27 0.00093 25.6 0.6 13 19-31 39-51 (324)
386 1s96_A Guanylate kinase, GMP k 20.6 28 0.00097 24.3 0.7 13 19-31 18-30 (219)
387 1sxj_B Activator 1 37 kDa subu 20.6 1.1E+02 0.0037 21.9 3.9 12 20-31 45-56 (323)
388 2ze6_A Isopentenyl transferase 20.5 29 0.00098 24.8 0.7 12 20-31 4-15 (253)
389 3pvs_A Replication-associated 20.5 1.7E+02 0.0057 22.9 5.2 14 18-31 51-64 (447)
390 3oaa_A ATP synthase subunit al 20.3 85 0.0029 25.4 3.4 54 19-76 164-231 (513)
391 3fwy_A Light-independent proto 20.3 38 0.0013 25.2 1.3 12 20-31 51-62 (314)
392 2yhs_A FTSY, cell division pro 20.2 1.1E+02 0.0036 24.7 4.0 13 19-31 295-307 (503)
393 4ag6_A VIRB4 ATPase, type IV s 20.2 48 0.0016 25.1 1.9 23 18-40 36-73 (392)
394 1uf9_A TT1252 protein; P-loop, 20.1 32 0.0011 23.0 0.9 14 18-31 9-22 (203)
395 1g3q_A MIND ATPase, cell divis 20.1 2.1E+02 0.0072 19.3 7.4 61 29-98 134-194 (237)
396 1iy2_A ATP-dependent metallopr 20.0 30 0.001 24.8 0.7 12 20-31 76-87 (278)
No 1
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.92 E-value=9.1e-25 Score=159.71 Aligned_cols=89 Identities=28% Similarity=0.394 Sum_probs=81.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.||+.+..|+..+....... +|++|||||+|+...+.++.++++.+++.+++.|+||||++|.||+++
T Consensus 89 ~ilv~di~~~~Sf~~i~~~~~~i~~~~~~~--~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAktg~nV~e~ 166 (216)
T 4dkx_A 89 AVVVYDITNVNSFQQTTKWIDDVRTERGSD--VIIMLVGNKTDLADKRQVSIEEGERKAKELNVMFIETSAKAGYNVKQL 166 (216)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred EEEEeecchhHHHHHHHHHHHHHHHhcCCC--CeEEEEeeccchHhcCcccHHHHhhHHHHhCCeeEEEeCCCCcCHHHH
Confidence 999999999999999999999998665544 999999999999888889999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+.|++.+...
T Consensus 167 F~~i~~~i~~~ 177 (216)
T 4dkx_A 167 FRRVAAALPGM 177 (216)
T ss_dssp HHHHHHHC---
T ss_pred HHHHHHHHHhh
Confidence 99999988654
No 2
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=1.4e-21 Score=139.20 Aligned_cols=114 Identities=29% Similarity=0.426 Sum_probs=102.3
Q ss_pred ccCCCCcceEEEEEEECCCCCCeE--------------------------------------------------------
Q psy2600 8 NLHNDNYEIQLKVVLLGDPSCGKI-------------------------------------------------------- 31 (158)
Q Consensus 8 ~~~~~~~~~~~ki~~~G~~~vgk~-------------------------------------------------------- 31 (158)
...+.+++..+||+++|.+++|||
T Consensus 14 ~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~ 93 (191)
T 3dz8_A 14 LYFQGNFDYMFKLLIIGNSSVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRHEKRVKLQIWDTAGQERYRTITTAYY 93 (191)
T ss_dssp EEETTEEEECEEEEEEESTTSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEETTTTEEEEEECHHHHHHCHHHHHHHH
T ss_pred cccccccCeeeEEEEECCCCcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEECCEEEEEEEEeCCChHHHHHHHHHHH
Confidence 344567889999999999999998
Q ss_pred -----EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCC
Q psy2600 32 -----VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 32 -----~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++.+++.++++||++|.
T Consensus 94 ~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 171 (191)
T 3dz8_A 94 RGAMGFILMYDITNEESFNAVQDWATQIKTYSWDN--AQVILVGNKCDMEEERVVPTEKGQLLAEQLGFDFFEASAKENI 171 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTB
T ss_pred ccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEECCCCC
Confidence 999999999999999999999998765444 9999999999998777778888999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHhH
Q psy2600 107 NCWVNTRTPEINPLKYL 123 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~~ 123 (158)
||+++|+.+.+.+.+..
T Consensus 172 gi~~l~~~l~~~i~~~~ 188 (191)
T 3dz8_A 172 SVRQAFERLVDAICDKM 188 (191)
T ss_dssp SHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999987653
No 3
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.87 E-value=2.4e-21 Score=139.75 Aligned_cols=118 Identities=24% Similarity=0.375 Sum_probs=99.0
Q ss_pred ccccccCCCCcceEEEEEEECCCCCCeE----------------------------------------------------
Q psy2600 4 VKMLNLHNDNYEIQLKVVLLGDPSCGKI---------------------------------------------------- 31 (158)
Q Consensus 4 ~~~~~~~~~~~~~~~ki~~~G~~~vgk~---------------------------------------------------- 31 (158)
+.|.......++..+|++++|.+++|||
T Consensus 13 ~~~~~~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~ 92 (201)
T 2ew1_A 13 GLVPRGSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSIT 92 (201)
T ss_dssp ---------CCSEEEEEEEEESTTSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHH
T ss_pred cccCCCCccccccceEEEEECcCCCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCcHHHHHHH
Confidence 4455666667889999999999999998
Q ss_pred ---------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeC
Q psy2600 32 ---------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSA 102 (158)
Q Consensus 32 ---------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa 102 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++..++.++++||
T Consensus 93 ~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa 170 (201)
T 2ew1_A 93 QSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNK--VITVLVGNKIDLAERREVSQQRAEEFSEAQDMYYLETSA 170 (201)
T ss_dssp GGGSTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCCEEECCT
T ss_pred HHHHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHHHHHHHHHcCCEEEEEeC
Confidence 999999999999999999999998765444 999999999999866677788888999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHhH
Q psy2600 103 RTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~~~~ 123 (158)
++|.||+++|+.+++.+.+..
T Consensus 171 ~~g~gv~~l~~~l~~~i~~~~ 191 (201)
T 2ew1_A 171 KESDNVEKLFLDLACRLISEA 191 (201)
T ss_dssp TTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999887654
No 4
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.87 E-value=7.3e-21 Score=134.07 Aligned_cols=91 Identities=24% Similarity=0.323 Sum_probs=76.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.||+++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 161 (183)
T 2fu5_C 84 IMLVYDITNEKSFDNIRNWIRNIEEHASAD--VEKMILGNKCDVNDKRQVSKERGEKLALDYGIKFMETSAKANINVENA 161 (183)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEEC--CCSCCCSCHHHHHHHHHHHTCEEEECCC---CCHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECccCCccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999999998764433 999999999999876777788899999999999999999999999999
Q ss_pred HHHHHHHHHHhHh
Q psy2600 112 TRTPEINPLKYLQ 124 (158)
Q Consensus 112 f~~l~~~~~~~~~ 124 (158)
|+.+.+.+.+...
T Consensus 162 ~~~l~~~i~~~~~ 174 (183)
T 2fu5_C 162 FFTLARDIKAKMD 174 (183)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999877644
No 5
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.86 E-value=7.9e-21 Score=136.20 Aligned_cols=113 Identities=30% Similarity=0.439 Sum_probs=100.5
Q ss_pred CCcceEEEEEEECCCCCCeE------------------------------------------------------------
Q psy2600 12 DNYEIQLKVVLLGDPSCGKI------------------------------------------------------------ 31 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~vgk~------------------------------------------------------------ 31 (158)
..+++.+||+++|.+++|||
T Consensus 3 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d 82 (203)
T 1zbd_A 3 HMFDYMFKILIIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGLERYRTITTAYYRGAM 82 (203)
T ss_dssp CSCSEEEEEEEECSTTSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHTTGGGCS
T ss_pred cccceeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEECCeEEEEEEEECCCchhhcchHHHhhcCCC
Confidence 45678999999999999998
Q ss_pred -EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 -VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 -~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.||++
T Consensus 83 ~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 160 (203)
T 1zbd_A 83 GFILMYDITNEESFNAVQDWSTQIKTYSWDN--AQVLLVGNKCDMEDERVVSSERGRQLADHLGFEFFEASAKDNINVKQ 160 (203)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHHHHHSCSS--CEEEEEEECTTCTTSCCSCHHHHHHHHHHHTCEEEECBTTTTBSSHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCcccccCHHHHHHHHHHCCCeEEEEECCCCCCHHH
Confidence 999999999999999999999998765433 99999999999987777778889999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhhc
Q psy2600 111 NTRTPEINPLKYLQSN 126 (158)
Q Consensus 111 lf~~l~~~~~~~~~~~ 126 (158)
+|++|.+.+.+.....
T Consensus 161 l~~~l~~~i~~~~~~~ 176 (203)
T 1zbd_A 161 TFERLVDVICEKMSES 176 (203)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999988765443
No 6
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.86 E-value=5.1e-21 Score=137.60 Aligned_cols=116 Identities=28% Similarity=0.410 Sum_probs=97.5
Q ss_pred cccccCCCCcceEEEEEEECCCCCCeE-----------------------------------------------------
Q psy2600 5 KMLNLHNDNYEIQLKVVLLGDPSCGKI----------------------------------------------------- 31 (158)
Q Consensus 5 ~~~~~~~~~~~~~~ki~~~G~~~vgk~----------------------------------------------------- 31 (158)
.+....++.++..+||+++|.+++|||
T Consensus 17 ~~~~~~~~~~~~~~ki~vvG~~~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~ 96 (201)
T 2hup_A 17 RGSGDPDEQYDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQ 96 (201)
T ss_dssp ---------CCEEEEEEEEECTTSSHHHHHHHHHHSCC----------CEEEEEEEETTEEEEEEEECCTTCGGGHHHHH
T ss_pred CCCCCcccccccceEEEEECcCCCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEECCEEEEEEEEECCCcHhHHHHHH
Confidence 344555677889999999999999998
Q ss_pred --------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeC
Q psy2600 32 --------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSA 102 (158)
Q Consensus 32 --------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa 102 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++ .++++||
T Consensus 97 ~~~~~~d~iilv~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA 174 (201)
T 2hup_A 97 SYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSN--IVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSA 174 (201)
T ss_dssp HHHTTCSEEEEEEETTBHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCSEEEECBT
T ss_pred HHHhhCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCccccccccCHHHHHHHHHHcCCCEEEEEeC
Confidence 999999999999999999999998765443 99999999999987667778889999999998 9999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q psy2600 103 RTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~~~ 122 (158)
+++.||+++|++|++.+.+.
T Consensus 175 ~~g~gi~~l~~~l~~~i~~~ 194 (201)
T 2hup_A 175 KDSSNVEEAFLRVATELIMR 194 (201)
T ss_dssp TTTBSHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHh
Confidence 99999999999999998764
No 7
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.86 E-value=8.3e-21 Score=135.10 Aligned_cols=119 Identities=23% Similarity=0.357 Sum_probs=99.1
Q ss_pred cccccccCCCCcceEEEEEEECCCCCCeE---------------------------------------------------
Q psy2600 3 EVKMLNLHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------- 31 (158)
Q Consensus 3 ~~~~~~~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------- 31 (158)
|+.|.....+.++..+||+++|.+++|||
T Consensus 11 ~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~ 90 (193)
T 2oil_A 11 SSGLVPRGSEDYNFVFKVVLIGESGVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLGTAAVKAQIWDTAGLERYRAI 90 (193)
T ss_dssp ---------CCCSEEEEEEEESSTTSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEETTEEEEEEEEEESCCCTTCTT
T ss_pred ccccccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCCchhhhhh
Confidence 45677777888999999999999999998
Q ss_pred ----------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEe
Q psy2600 32 ----------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVS 101 (158)
Q Consensus 32 ----------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 101 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++..++.++++|
T Consensus 91 ~~~~~~~~d~vi~v~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~S 168 (193)
T 2oil_A 91 TSAYYRGAVGALLVFDLTKHQTYAVVERWLKELYDHAEAT--IVVMLVGNKSDLSQAREVPTEEARMFAENNGLLFLETS 168 (193)
T ss_dssp HHHHHTTCCEEEEEEETTCHHHHHTHHHHHHHHHTTSCTT--CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEC
T ss_pred hHHHhccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEe
Confidence 899999999999999999999998654333 99999999999976666777888899999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhH
Q psy2600 102 ARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~~~~~~~ 123 (158)
|+++.||+++|+.|.+.+.+..
T Consensus 169 a~~~~gi~~l~~~l~~~i~~~~ 190 (193)
T 2oil_A 169 ALDSTNVELAFETVLKEIFAKV 190 (193)
T ss_dssp TTTCTTHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHHh
Confidence 9999999999999999887654
No 8
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.86 E-value=1.6e-20 Score=133.59 Aligned_cols=115 Identities=23% Similarity=0.317 Sum_probs=101.7
Q ss_pred cccCCCCcceEEEEEEECCCCCCeE-------------------------------------------------------
Q psy2600 7 LNLHNDNYEIQLKVVLLGDPSCGKI------------------------------------------------------- 31 (158)
Q Consensus 7 ~~~~~~~~~~~~ki~~~G~~~vgk~------------------------------------------------------- 31 (158)
...........+|++++|..++|||
T Consensus 11 ~~~~~~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~ 90 (191)
T 2a5j_A 11 SSGLVPRGSYLFKYIIIGDTGVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNIDGKQIKLQIWDTAGQESFRSITRSY 90 (191)
T ss_dssp CCCCCCTTCEEEEEEEESSTTSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEETTEEEEEEEECCTTGGGTSCCCHHH
T ss_pred ccccccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEECCEEEEEEEEECCCchhhhhhHHHH
Confidence 3444556788999999999999998
Q ss_pred ------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCC
Q psy2600 32 ------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++.+++.++++||+++
T Consensus 91 ~~~~d~ii~v~d~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (191)
T 2a5j_A 91 YRGAAGALLVYDITRRETFNHLTSWLEDARQHSSSN--MVIMLIGNKSDLESRRDVKREEGEAFAREHGLIFMETSAKTA 168 (191)
T ss_dssp HTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTC
T ss_pred hccCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccCCccccCHHHHHHHHHHcCCEEEEEeCCCC
Confidence 999999999999999999999998765444 999999999999776677788899999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHhH
Q psy2600 106 DNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~~ 123 (158)
.||+++|+.|.+.+.+..
T Consensus 169 ~gi~~l~~~l~~~i~~~~ 186 (191)
T 2a5j_A 169 CNVEEAFINTAKEIYRKI 186 (191)
T ss_dssp TTHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 999999999999987754
No 9
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=135.65 Aligned_cols=119 Identities=24% Similarity=0.329 Sum_probs=98.8
Q ss_pred cccccCCCCcceEEEEEEECCCCCCeE-----------------------------------------------------
Q psy2600 5 KMLNLHNDNYEIQLKVVLLGDPSCGKI----------------------------------------------------- 31 (158)
Q Consensus 5 ~~~~~~~~~~~~~~ki~~~G~~~vgk~----------------------------------------------------- 31 (158)
.|.......++..+||+++|..++|||
T Consensus 13 ~~~~~~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~ 92 (200)
T 2o52_A 13 GLVPRGSIWSDFLFKFLVIGSAGTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVGGKTVKLQIWDTAGQERFRSVTR 92 (200)
T ss_dssp ---------CCEEEEEEEEESTTSSHHHHHHHHHC------------CCEEEEEEEETTEEEEEEEECCTTHHHHSCCCH
T ss_pred ccccccccccCcceEEEEECcCCCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEECCeeeEEEEEcCCCcHhHHHHHH
Confidence 344445557788999999999999998
Q ss_pred --------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCC
Q psy2600 32 --------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSAR 103 (158)
Q Consensus 32 --------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 103 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+...++..+++..++.++++||+
T Consensus 93 ~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~SA~ 170 (200)
T 2o52_A 93 SYYRGAAGALLVYDITSRETYNSLAAWLTDARTLASPN--IVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSAL 170 (200)
T ss_dssp HHHTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHTCTT--CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEECTT
T ss_pred HHhccCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCcccccccCHHHHHHHHHHcCCEEEEEeCC
Confidence 899999999999999999999998655444 9999999999997666677788889999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHhHhh
Q psy2600 104 TGDNCWVNTRTPEINPLKYLQS 125 (158)
Q Consensus 104 ~~~~i~~lf~~l~~~~~~~~~~ 125 (158)
+|.||+++|++|.+.+.+....
T Consensus 171 ~g~gi~~l~~~l~~~i~~~~~~ 192 (200)
T 2o52_A 171 TGENVEEAFLKCARTILNKIDS 192 (200)
T ss_dssp TCTTHHHHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHHHHHHhc
Confidence 9999999999999998876543
No 10
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.86 E-value=1.6e-20 Score=133.53 Aligned_cols=110 Identities=26% Similarity=0.422 Sum_probs=100.1
Q ss_pred CCcceEEEEEEECCCCCCeE------------------------------------------------------------
Q psy2600 12 DNYEIQLKVVLLGDPSCGKI------------------------------------------------------------ 31 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~vgk~------------------------------------------------------------ 31 (158)
...+..+||+++|.+++|||
T Consensus 11 ~~~~~~~ki~v~G~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 90 (196)
T 3tkl_A 11 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 90 (196)
T ss_dssp CCCSEEEEEEEECSTTSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEETTEEEEEEEEEECCSGGGCTTHHHHHTTCS
T ss_pred cccccceEEEEECcCCCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEECCEEEEEEEEECCCcHhhhhhHHHHHhhCC
Confidence 45678899999999999998
Q ss_pred -EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 -VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 -~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+...++..+++.+++.++++||+++.||++
T Consensus 91 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~ 168 (196)
T 3tkl_A 91 GIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 168 (196)
T ss_dssp EEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEEECTTTCTTHHH
T ss_pred EEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCHHH
Confidence 999999999999999999999998765544 99999999999987777888889999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|+++.+.+.+..
T Consensus 169 l~~~l~~~i~~~~ 181 (196)
T 3tkl_A 169 SFMTMAAEIKKRM 181 (196)
T ss_dssp HHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 11
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.86 E-value=4.9e-21 Score=139.39 Aligned_cols=89 Identities=18% Similarity=0.104 Sum_probs=77.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++.||+.+..|+..+... .... +|+++|+||+|+...+.+..+++..++..+++.|++|||++|.||++
T Consensus 115 ~ilVydvt~~~sf~~~~~~~~~l~~~~~~~~--~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~e~SAk~g~~v~e 192 (211)
T 2g3y_A 115 YLIVYSITDRASFEKASELRIQLRRARQTED--IPIILVGNKSDLVRCREVSVSEGRACAVVFDCKFIETSAAVQHNVKE 192 (211)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHTSGGGTT--SCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCCC--CcEEEEEEChHHhcCceEeHHHHHHHHHHcCCEEEEEeCCCCCCHHH
Confidence 89999999999999999999888743 2223 89999999999976667777888888888999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|+.+++.+...
T Consensus 193 lf~~l~~~i~~~ 204 (211)
T 2g3y_A 193 LFEGIVRQVRLR 204 (211)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999988543
No 12
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.86 E-value=1.1e-20 Score=135.48 Aligned_cols=89 Identities=24% Similarity=0.249 Sum_probs=79.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++.+|+.+..|+.++..... .. +|+++|+||+|+...+.+..+++..+++.+++.|+++||++|.||++
T Consensus 100 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~a~~~~~~~~e~Sa~~~~~v~~ 177 (195)
T 3cbq_A 100 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 177 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSC--CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEeechhccccCCcCHHHHHHHHHHhCCEEEEEcCCCCCCHHH
Confidence 8999999999999999999999886543 23 99999999999987777788889999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|+.+++.+...
T Consensus 178 lf~~l~~~i~~~ 189 (195)
T 3cbq_A 178 LFEGAVRQIRLR 189 (195)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHHh
Confidence 999999988653
No 13
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.85 E-value=2.8e-20 Score=132.00 Aligned_cols=113 Identities=28% Similarity=0.388 Sum_probs=99.7
Q ss_pred cCCCCcceEEEEEEECCCCCCeE---------------------------------------------------------
Q psy2600 9 LHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------------- 31 (158)
Q Consensus 9 ~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------------- 31 (158)
......++.+||+++|.+++|||
T Consensus 14 ~~~~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~l~Dt~G~~~~~~~~~~~~~ 93 (189)
T 2gf9_A 14 LVPRGSDYMFKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYR 93 (189)
T ss_dssp CCCTTCSEEEEEEEECSTTSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEETTEEEEEEEEECCSCCSSCCSGGGGGT
T ss_pred CCCcccCceeEEEEECCCCCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEECCeEEEEEEEeCCCcHHHhhhHHHhcc
Confidence 34456778999999999999998
Q ss_pred ----EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 32 ----VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 32 ----~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++.+++.++++||++|.|
T Consensus 94 ~~d~ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~g 171 (189)
T 2gf9_A 94 GAMGFLLMYDIANQESFAAVQDWATQIKTYSWDN--AQVILVGNKCDLEDERVVPAEDGRRLADDLGFEFFEASAKENIN 171 (189)
T ss_dssp TCSEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBS
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccCCCHHHHHHHHHHcCCeEEEEECCCCCC
Confidence 999999999999999999999998765333 99999999999987666777888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhH
Q psy2600 108 CWVNTRTPEINPLKYL 123 (158)
Q Consensus 108 i~~lf~~l~~~~~~~~ 123 (158)
|+++|+.|.+.+.+..
T Consensus 172 i~~l~~~l~~~i~~~~ 187 (189)
T 2gf9_A 172 VKQVFERLVDVICEKM 187 (189)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHh
Confidence 9999999999887643
No 14
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.84 E-value=3.6e-20 Score=128.67 Aligned_cols=88 Identities=24% Similarity=0.258 Sum_probs=79.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+.++..... .. +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.|+++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 156 (169)
T 3q85_A 79 FLIVFSVTDRRSFSKVPETLLRLRAGRPHHD--LPVILVGNKSDLARSREVSLEEGRHLAGTLSCKHIETSAALHHNTRE 156 (169)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSTTSC--CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEEEECCChHHHHHHHHHHHHHHhcccCCC--CCEEEEeeCcchhhcccCCHHHHHHHHHHcCCcEEEecCccCCCHHH
Confidence 9999999999999999999999986543 23 89999999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+|+.+++.+..
T Consensus 157 l~~~l~~~i~~ 167 (169)
T 3q85_A 157 LFEGAVRQIRL 167 (169)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHh
Confidence 99999998765
No 15
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.84 E-value=4.9e-20 Score=129.10 Aligned_cols=91 Identities=27% Similarity=0.336 Sum_probs=81.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+...... +|+++|+||+|+...+.+..++...++..++++++++||++|.|++++
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (181)
T 3tw8_B 85 VIVVYDVTSAESFVNVKRWLHEINQNCDD---VCRILVGNKNDDPERKVVETEDAYKFAGQMGIQLFETSAKENVNVEEM 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCTT---SEEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCCCchhcccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 99999999999999999999999876543 999999999999877777888899999999999999999999999999
Q ss_pred HHHHHHHHHHhHhh
Q psy2600 112 TRTPEINPLKYLQS 125 (158)
Q Consensus 112 f~~l~~~~~~~~~~ 125 (158)
|+.+.+.+.+....
T Consensus 162 ~~~l~~~~~~~~~~ 175 (181)
T 3tw8_B 162 FNCITELVLRAKKD 175 (181)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999998876543
No 16
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.84 E-value=5.1e-20 Score=129.92 Aligned_cols=91 Identities=24% Similarity=0.360 Sum_probs=81.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+...++..+++..++.++++||++|.||+++
T Consensus 86 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 163 (186)
T 2bme_A 86 ALLVYDITSRETYNALTNWLTDARMLASQN--IVIILCGNKKDLDADREVTFLEASRFAQENELMFLETSALTGENVEEA 163 (186)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEecCCCCCCHHHH
Confidence 999999999999999999999988665444 999999999999766677778889999999999999999999999999
Q ss_pred HHHHHHHHHHhHh
Q psy2600 112 TRTPEINPLKYLQ 124 (158)
Q Consensus 112 f~~l~~~~~~~~~ 124 (158)
|+.+.+.+.+...
T Consensus 164 ~~~l~~~~~~~~~ 176 (186)
T 2bme_A 164 FVQCARKILNKIE 176 (186)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887643
No 17
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.84 E-value=8.5e-20 Score=128.59 Aligned_cols=88 Identities=23% Similarity=0.222 Sum_probs=79.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCC-CCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSAR-TGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~-~~~~i~ 109 (158)
+++|||++++.+|+.+..|+..+... .... +|+++|+||+|+...+.+..+++..+++.++++|+++||+ ++.||+
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~v~ 170 (183)
T 3kkq_A 93 FLIVYSVTDKASFEHVDRFHQLILRVKDRES--FPMILVANKVDLMHLRKVTRDQGKEMATKYNIPYIETSAKDPPLNVD 170 (183)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTSSC--CCEEEEEECTTCSTTCCSCHHHHHHHHHHHTCCEEEEBCSSSCBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEECCCchhccCcCHHHHHHHHHHhCCeEEEeccCCCCCCHH
Confidence 99999999999999999999998753 2233 8999999999998777888889999999999999999999 999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++|+.+.+.+.+
T Consensus 171 ~l~~~l~~~i~~ 182 (183)
T 3kkq_A 171 KTFHDLVRVIRQ 182 (183)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999998764
No 18
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.84 E-value=6.1e-20 Score=128.06 Aligned_cols=90 Identities=19% Similarity=0.110 Sum_probs=78.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+.... ... +|+++|+||+|+...+.+..+++..++..++++++++||++|.||++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~~--~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 158 (175)
T 2nzj_A 81 YVIVYSIADRGSFESASELRIQLRRTHQADH--VPIILVGNKADLARCREVSVEEGRACAVVFDCKFIETSATLQHNVAE 158 (175)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHHTSEEEECBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhccCC--CCEEEEEEChhhccccccCHHHHHHHHHHcCCeEEEEecCCCCCHHH
Confidence 999999999999999999999887542 122 89999999999987777778888889999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|+.|.+.+....
T Consensus 159 l~~~l~~~~~~~~ 171 (175)
T 2nzj_A 159 LFEGVVRQLRLRR 171 (175)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887643
No 19
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.84 E-value=3.7e-20 Score=128.63 Aligned_cols=88 Identities=23% Similarity=0.329 Sum_probs=78.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.|++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 159 (170)
T 1z08_A 82 AILVYDITDEDSFQKVKNWVKELRKMLGNE--ICLCIVGNKIDLEKERHVSIQEAESYAESVGAKHYHTSAKQNKGIEEL 159 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHGGG--SEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHHH
Confidence 999999999999999999999988544333 899999999999876677788899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|+++.+.+.+
T Consensus 160 ~~~l~~~~~~ 169 (170)
T 1z08_A 160 FLDLCKRMIE 169 (170)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999988754
No 20
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.84 E-value=7.6e-20 Score=127.90 Aligned_cols=88 Identities=26% Similarity=0.374 Sum_probs=78.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++.+++.++++||++|.||+++
T Consensus 91 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 168 (179)
T 1z0f_A 91 ALMVYDITRRSTYNHLSSWLTDARNLTNPN--TVIILIGNKADLEAQRDVTYEEAKQFAEENGLLFLEASAKTGENVEDA 168 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEeCcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999998765444 999999999999766667778899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|+++.+.+.+
T Consensus 169 ~~~l~~~i~~ 178 (179)
T 1z0f_A 169 FLEAAKKIYQ 178 (179)
T ss_dssp HHHHHHHHC-
T ss_pred HHHHHHHHhh
Confidence 9999987743
No 21
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.84 E-value=3.5e-20 Score=128.42 Aligned_cols=89 Identities=18% Similarity=0.140 Sum_probs=78.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+.... ... +|+++|+||+|+...+.+..+++..++..++++++++||++|.|+++
T Consensus 76 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 153 (166)
T 3q72_A 76 YVIVYSVTDKGSFEKASELRVQLRRARQTDD--VPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAALHHNVQA 153 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHCC---C--CCEEEEEECTTCCSSCCSCHHHHHHHHHHTTCEEEECBGGGTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEeccccccccccCHHHHHHHHHHhCCcEEEeccCCCCCHHH
Confidence 899999999999999999999988542 223 89999999999987778888899999999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|+.+.+.+.+.
T Consensus 154 l~~~l~~~~~~~ 165 (166)
T 3q72_A 154 LFEGVVRQIRLR 165 (166)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhc
Confidence 999999987653
No 22
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.83 E-value=1.3e-19 Score=127.10 Aligned_cols=89 Identities=29% Similarity=0.396 Sum_probs=79.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++...+++.+++.++++||+++.|++++
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 164 (180)
T 2g6b_A 87 LLLLYDVTNKASFDNIQAWLTEIHEYAQHD--VALMLLGNKVDSAHERVVKREDGEKLAKEYGLPFMETSAKTGLNVDLA 164 (180)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECCSTTSCCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 899999999999999999999998765443 999999999999877777788889999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+++.+.+.+.
T Consensus 165 ~~~l~~~~~~~ 175 (180)
T 2g6b_A 165 FTAIAKELKRR 175 (180)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999988653
No 23
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.83 E-value=1e-19 Score=129.21 Aligned_cols=109 Identities=22% Similarity=0.265 Sum_probs=94.5
Q ss_pred CCcceEEEEEEECCCCCCeE------------------------------------------------------EEEEEE
Q psy2600 12 DNYEIQLKVVLLGDPSCGKI------------------------------------------------------VIFMYD 37 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~vgk~------------------------------------------------------~i~v~d 37 (158)
....-.+|++++|.+++||| +++|||
T Consensus 15 ~~~~~~~ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~l~i~Dt~G~~~~~~~~~~~~~i~v~d 94 (184)
T 3ihw_A 15 YFQGPELKVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQSYLLLIRDEGGPPELQFAAWVDAVVFVFS 94 (184)
T ss_dssp -CCCCEEEEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEEEEEEEEECSSSCCHHHHHHCSEEEEEEE
T ss_pred CCCCCeeEEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEEEEEEEEECCCChhhheecCCCEEEEEEE
Confidence 34456789999999999998 899999
Q ss_pred CCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCC--CCccccHHHHHHHHHHhC-CeEEEEeCCCCCCHHHHHH
Q psy2600 38 ITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDME--HQRVVTLERHAKLAQSLH-LHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 38 ~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~~-~~~~~~Sa~~~~~i~~lf~ 113 (158)
++++.+|+.+..|+..+..... .. +|+++|+||+|+. ..+.+..+++..+++.++ +.|+++||++|.||+++|+
T Consensus 95 ~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~e~Sa~~~~gv~~lf~ 172 (184)
T 3ihw_A 95 LEDEISFQTVYNYFLRLCSFRNASE--VPMVLVGTQDAISAANPRVIDDSRARKLSTDLKRCTYYETCATYGLNVERVFQ 172 (184)
T ss_dssp TTCHHHHHHHHHHHHHHHTTSCGGG--SCEEEEEECTTCBTTBCCCSCHHHHHHHHHHTTTCEEEEEBTTTTBTHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccccccccCHHHHHHHHHHcCCCeEEEecCCCCCCHHHHHH
Confidence 9999999999999999986532 22 8999999999993 466778889999999987 8999999999999999999
Q ss_pred HHHHHHHHh
Q psy2600 114 TPEINPLKY 122 (158)
Q Consensus 114 ~l~~~~~~~ 122 (158)
.+++.+.+.
T Consensus 173 ~l~~~i~~~ 181 (184)
T 3ihw_A 173 DVAQKVVAL 181 (184)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988764
No 24
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.83 E-value=1.3e-19 Score=130.13 Aligned_cols=90 Identities=23% Similarity=0.316 Sum_probs=80.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.||+++
T Consensus 84 vilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 161 (206)
T 2bcg_Y 84 IIIVYDVTDQESFNGVKMWLQEIDRYATST--VLKLLVGNKCDLKDKRVVEYDVAKEFADANKMPFLETSALDSTNVEDA 161 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCCEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999999998665444 999999999999876677788888999999999999999999999999
Q ss_pred HHHHHHHHHHhH
Q psy2600 112 TRTPEINPLKYL 123 (158)
Q Consensus 112 f~~l~~~~~~~~ 123 (158)
|+.+.+.+.+..
T Consensus 162 ~~~l~~~i~~~~ 173 (206)
T 2bcg_Y 162 FLTMARQIKESM 173 (206)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 999999887653
No 25
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.83 E-value=9.2e-20 Score=130.30 Aligned_cols=89 Identities=19% Similarity=0.133 Sum_probs=77.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.||+.+..|+..+.... ..+ +|+++|+||+|+...+.+..+++..++..+++.|++|||++|.||++
T Consensus 84 ~i~v~dv~~~~s~~~~~~~~~~l~~~~~~~~--~piilV~NK~Dl~~~r~v~~~~~~~~a~~~~~~~~e~SA~~g~~v~~ 161 (192)
T 2cjw_A 84 YLIVYSITDRASFEKASELRIQLRRARQTED--IPIILVGNKSDLVRXREVSVSEGRAXAVVFDXKFIETSAAVQHNVKE 161 (192)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSC--CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCCCC--CeEEEEEechhhhccccccHHHHHHHHHHhCCceEEeccccCCCHHH
Confidence 899999999999999999998887542 223 89999999999976666777788888888899999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|+.+++.+...
T Consensus 162 lf~~l~~~~~~~ 173 (192)
T 2cjw_A 162 LFEGIVRQVRLR 173 (192)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhh
Confidence 999999988654
No 26
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.83 E-value=1e-19 Score=129.69 Aligned_cols=109 Identities=27% Similarity=0.399 Sum_probs=95.6
Q ss_pred CCCcceEEEEEEECCCCCCeE-----------------------------------------------------------
Q psy2600 11 NDNYEIQLKVVLLGDPSCGKI----------------------------------------------------------- 31 (158)
Q Consensus 11 ~~~~~~~~ki~~~G~~~vgk~----------------------------------------------------------- 31 (158)
....+..+||+++|..++|||
T Consensus 20 p~~~~~~~ki~vvG~~~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~ 99 (192)
T 2il1_A 20 PRPADFKLQVIIIGSRGVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELRGKKIRLQIWDTAGQERFNSITSAYYRSA 99 (192)
T ss_dssp --CCSEEEEEEEECSTTSSHHHHHHHHCC--------CCTTEEEEEEEEEETTEEEEEEEEEECCSGGGHHHHHHHHHHC
T ss_pred CcccCCceEEEEECCCCCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEECCeEEEEEEEeCCCcHHHHHHHHHHhcCC
Confidence 346678899999999999998
Q ss_pred --EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh-CCeEEEEeCCCCCCH
Q psy2600 32 --VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL-HLHSFAVSARTGDNC 108 (158)
Q Consensus 32 --~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i 108 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++.. +..++++||++|.||
T Consensus 100 d~iilV~D~~~~~s~~~~~~~~~~i~~~~~~~--~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~~SA~~g~gi 177 (192)
T 2il1_A 100 KGIILVYDITKKETFDDLPKWMKMIDKYASED--AELLLVGNKLDCETDREITRQQGEKFAQQITGMRFCEASAKDNFNV 177 (192)
T ss_dssp SEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHHHHHHHHTSTTCEEEECBTTTTBSH
T ss_pred CEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHHHHHHHHhcCCCeEEEEeCCCCCCH
Confidence 999999999999999999999988765544 999999999999876677778888888875 789999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2600 109 WVNTRTPEINPLK 121 (158)
Q Consensus 109 ~~lf~~l~~~~~~ 121 (158)
+++|+.|.+.+.+
T Consensus 178 ~~l~~~l~~~i~~ 190 (192)
T 2il1_A 178 DEIFLKLVDDILK 190 (192)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
No 27
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.83 E-value=3.8e-20 Score=134.39 Aligned_cols=89 Identities=22% Similarity=0.242 Sum_probs=78.3
Q ss_pred EEEEEECCChhHHhh-HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHS-IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~-~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 97 (158)
+|+|||++++.+|+. +..|+..+...... +|+++|+||+|+... +.+..+++..+++.+++ .|
T Consensus 102 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 178 (214)
T 3q3j_B 102 VLLCFDISRPETVDSALKKWRTEILDYCPS---TRVLLIGCKTDLRTDLSTLMELSHQKQAPISYEQGCAIAKQLGAEIY 178 (214)
T ss_dssp EEEEEETTCTHHHHHHHTHHHHHHHHHCTT---SEEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccchhhhhhhcccccCccCHHHHHHHHHHcCCCEE
Confidence 999999999999999 68999999876543 999999999999652 56788899999999998 89
Q ss_pred EEEeCCCCCC-HHHHHHHHHHHHHHhH
Q psy2600 98 FAVSARTGDN-CWVNTRTPEINPLKYL 123 (158)
Q Consensus 98 ~~~Sa~~~~~-i~~lf~~l~~~~~~~~ 123 (158)
++|||++|.| |+++|+.+++.+....
T Consensus 179 ~e~SA~~g~g~v~~lf~~l~~~~~~~~ 205 (214)
T 3q3j_B 179 LEGSAFTSEKSIHSIFRTASMLCLNKP 205 (214)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHC--
T ss_pred EEeccCCCcccHHHHHHHHHHHHhccC
Confidence 9999999998 9999999999887654
No 28
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.83 E-value=1.7e-19 Score=125.15 Aligned_cols=88 Identities=31% Similarity=0.389 Sum_probs=77.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+. .+.+..+++..+++.++++++++||++|.|++++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~l 155 (170)
T 1g16_A 79 IILVYDITDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 155 (170)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCT-TCCSCHHHHHHHHHHHTCCEEECBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCC-cCccCHHHHHHHHHHcCCeEEEEECCCCCCHHHH
Confidence 899999999999999999999998765443 9999999999994 4456677888899999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+.+.+.+.+.
T Consensus 156 ~~~l~~~~~~~ 166 (170)
T 1g16_A 156 FFTLAKLIQEK 166 (170)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 99999988764
No 29
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.82 E-value=1.9e-19 Score=126.23 Aligned_cols=91 Identities=19% Similarity=0.224 Sum_probs=76.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC---CCCCcEEEEEEeCCCCC--CCccccHHHHHHHHHHh-CCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK---SSTPTYVALVANKGDME--HQRVVTLERHAKLAQSL-HLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~--~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|++.+..... .. +|+++|+||+|+. ..+.+..+++..+++.+ ++.++++||++|
T Consensus 76 ~ilv~D~~~~~s~~~~~~~~~~i~~~~~~~~~~--~piilv~nK~Dl~~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (178)
T 2iwr_A 76 VIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGG--LALALVGTQDRISASSPRVVGDARARALXADMKRCSYYETXATYG 153 (178)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCSSSCC--CEEEEEEECTTCBTTBCCCSCHHHHHHHHHHHSSEEEEEEBTTTT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccccccccCcCCHHHHHHHHHhhcCCeEEEEecccc
Confidence 9999999999999999998776664322 23 8999999999993 45567788888898886 688999999999
Q ss_pred CCHHHHHHHHHHHHHHhHh
Q psy2600 106 DNCWVNTRTPEINPLKYLQ 124 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~~~ 124 (158)
.||+++|+.+++.+.+...
T Consensus 154 ~~i~~lf~~l~~~~~~~~~ 172 (178)
T 2iwr_A 154 LNVDRVFQEVAQKVVTLRK 172 (178)
T ss_dssp BTHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHh
Confidence 9999999999998877543
No 30
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.82 E-value=1.5e-19 Score=125.38 Aligned_cols=87 Identities=25% Similarity=0.273 Sum_probs=77.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+++.+..|+..+....... +|+++|+||+|+...+.+..++...+++.++..++++||+++.|++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~l~~~~~~~--~~iilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 159 (170)
T 1z0j_A 82 AIIVYDITKEETFSTLKNWVRELRQHGPPS--IVVAIAGNKCDLTDVREVMERDAKDYADSIHAIFVETSAKNAININEL 159 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--SEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECCccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence 899999999999999999999998765444 999999999999876677788888999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|+.+.+.+.
T Consensus 160 ~~~i~~~i~ 168 (170)
T 1z0j_A 160 FIEISRRIP 168 (170)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHh
Confidence 999988763
No 31
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.82 E-value=2.7e-19 Score=126.51 Aligned_cols=92 Identities=25% Similarity=0.397 Sum_probs=81.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++.+++.+..|+..+..... .. +|+++|+||+|+...+.+..+++..+++.+++.++++||+++.||++
T Consensus 97 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 174 (195)
T 3bc1_A 97 FLLLFDLTNEQSFLNVRNWISQLQMHAYSEN--PDIVLCGNKSDLEDQRAVKEEEARELAEKYGIPYFETSAANGTNISH 174 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSSSSS--CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccccccCHHHHHHHHHHcCCCEEEEECCCCCCHHH
Confidence 8999999999999999999999986543 23 89999999999976666777888999999999999999999999999
Q ss_pred HHHHHHHHHHHhHhh
Q psy2600 111 NTRTPEINPLKYLQS 125 (158)
Q Consensus 111 lf~~l~~~~~~~~~~ 125 (158)
+|+.|.+.+.+....
T Consensus 175 l~~~l~~~~~~~~~~ 189 (195)
T 3bc1_A 175 AIEMLLDLIMKRMER 189 (195)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999998776543
No 32
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.82 E-value=2e-19 Score=126.23 Aligned_cols=89 Identities=26% Similarity=0.288 Sum_probs=78.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.||+++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 165 (181)
T 2efe_B 88 AIIVFDVTNQASFERAKKWVQELQAQGNPN--MVMALAGNKSDLLDARKVTAEDAQTYAQENGLFFMETSAKTATNVKEI 165 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCSSSCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccccCCHHHHHHHHHHcCCEEEEEECCCCCCHHHH
Confidence 999999999999999999999998765433 999999999999876777788899999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+.|.+.+...
T Consensus 166 ~~~l~~~~~~~ 176 (181)
T 2efe_B 166 FYEIARRLPRV 176 (181)
T ss_dssp HHHHHHTCC--
T ss_pred HHHHHHHHHhc
Confidence 99999887553
No 33
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.82 E-value=1.1e-19 Score=125.89 Aligned_cols=87 Identities=25% Similarity=0.310 Sum_probs=77.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.|++++
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~l 159 (170)
T 1r2q_A 82 AIVVYDITNEESFARAKNWVKELQRQASPN--IVIALSGNKADLANKRAVDFQEAQSYADDNSLLFMETSAKTSMNVNEI 159 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECccCccccccCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999999998664443 999999999999766667778888999999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|++|.+.+.
T Consensus 160 ~~~i~~~~~ 168 (170)
T 1r2q_A 160 FMAIAKKLP 168 (170)
T ss_dssp HHHHHHTSC
T ss_pred HHHHHHHHh
Confidence 999988763
No 34
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.82 E-value=8.3e-20 Score=130.11 Aligned_cols=88 Identities=23% Similarity=0.265 Sum_probs=78.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++.+++.++++||+++.||+++
T Consensus 99 iilV~d~~~~~s~~~~~~~~~~i~~~~~~~--~piiiv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 176 (192)
T 2fg5_A 99 AVIVYDITKQDSFYTLKKWVKELKEHGPEN--IVMAIAGNKCDLSDIREVPLKDAKEYAESIGAIVVETSAKNAINIEEL 176 (192)
T ss_dssp EEEEEETTCTHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHHHHHHHHTTTCEEEECBTTTTBSHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCcCHHHH
Confidence 899999999999999999999998765444 999999999999766667788899999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|+.|.+.+.+
T Consensus 177 ~~~l~~~i~~ 186 (192)
T 2fg5_A 177 FQGISRQIPP 186 (192)
T ss_dssp HHHHHHTCC-
T ss_pred HHHHHHHHHh
Confidence 9999988754
No 35
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.82 E-value=1.8e-19 Score=130.45 Aligned_cols=91 Identities=29% Similarity=0.407 Sum_probs=79.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..+++..+++.+++.++++||+++.||++
T Consensus 111 iilV~D~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 188 (217)
T 2f7s_A 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYCEN--PDIVLIGNKADLPDQREVNERQARELADKYGIPYFETSAATGQNVEK 188 (217)
T ss_dssp EEEEEETTCHHHHHHHHHHHHTCCCCCTTTC--CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEEEBTTTTBTHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCC--CCEEEEEECCccccccccCHHHHHHHHHHCCCcEEEEECCCCCCHHH
Confidence 8999999999999999999998875432 23 99999999999987667778889999999999999999999999999
Q ss_pred HHHHHHHHHHHhHh
Q psy2600 111 NTRTPEINPLKYLQ 124 (158)
Q Consensus 111 lf~~l~~~~~~~~~ 124 (158)
+|++|.+.+.+...
T Consensus 189 l~~~l~~~i~~~~~ 202 (217)
T 2f7s_A 189 AVETLLDLIMKRME 202 (217)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999877543
No 36
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.82 E-value=9e-20 Score=129.58 Aligned_cols=88 Identities=27% Similarity=0.281 Sum_probs=78.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC---CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeC-CCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK---SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSA-RTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa-~~~~~ 107 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..+++..+++.+++.|+++|| ++|.|
T Consensus 95 ~ilv~d~~~~~s~~~~~~~~~~i~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~e~Sa~~~g~g 172 (187)
T 3c5c_A 95 FLVVYSVDSRQSFDSSSSYLELLALHAKETQRS--IPALLLGNKLDMAQYRQVTKAEGVALAGRFGCLFFEVSACLDFEH 172 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHHHHCCC--CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECCSSSCSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhhccCCC--CCEEEEEECcchhhcCccCHHHHHHHHHHcCCcEEEEeecCcccc
Confidence 9999999999999999999999986521 22 899999999999876777888999999999999999999 89999
Q ss_pred HHHHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINPLK 121 (158)
Q Consensus 108 i~~lf~~l~~~~~~ 121 (158)
|+++|+.+++.+.+
T Consensus 173 v~~lf~~l~~~i~~ 186 (187)
T 3c5c_A 173 VQHVFHEAVREARR 186 (187)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999988753
No 37
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.82 E-value=1.1e-19 Score=132.40 Aligned_cols=90 Identities=23% Similarity=0.308 Sum_probs=77.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..+++..+++.+++.++++||+++.||+++
T Consensus 89 vilV~D~~~~~s~~~~~~~l~~i~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 166 (223)
T 3cpj_B 89 ALIVYDISKSSSYENCNHWLSELRENADDN--VAVGLIGNKSDLAHLRAVPTEESKTFAQENQLLFTETSALNSENVDKA 166 (223)
T ss_dssp EEEEEC-CCHHHHHHHHHHHHHHHHHCC----CEEEEEECCGGGGGGCCSCHHHHHHHHHHTTCEEEECCCC-CCCHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999998664433 999999999999766677778889999999999999999999999999
Q ss_pred HHHHHHHHHHhH
Q psy2600 112 TRTPEINPLKYL 123 (158)
Q Consensus 112 f~~l~~~~~~~~ 123 (158)
|++|.+.+.+..
T Consensus 167 ~~~l~~~i~~~~ 178 (223)
T 3cpj_B 167 FEELINTIYQKV 178 (223)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHHHh
Confidence 999999887654
No 38
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.82 E-value=2.2e-19 Score=125.72 Aligned_cols=91 Identities=24% Similarity=0.265 Sum_probs=79.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhh-hcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHL-NRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+.. ..... +|+++|+||+|+...+.+..+++..++...++.++++||++|.||++
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gv~~ 161 (181)
T 2fn4_A 84 FLLVFAINDRQSFNEVGKLFTQILRVKDRDD--FPVVLVGNKADLESQRQVPRSEASAFGASHHVAYFEASAKLRLNVDE 161 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTSSC--CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECBTTTTBSHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECcccccccccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999999999853 33333 89999999999987667778888899999999999999999999999
Q ss_pred HHHHHHHHHHHhHh
Q psy2600 111 NTRTPEINPLKYLQ 124 (158)
Q Consensus 111 lf~~l~~~~~~~~~ 124 (158)
+|+.|.+.+.+...
T Consensus 162 l~~~l~~~~~~~~~ 175 (181)
T 2fn4_A 162 AFEQLVRAVRKYQE 175 (181)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhhc
Confidence 99999999876543
No 39
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.81 E-value=2.2e-19 Score=127.85 Aligned_cols=88 Identities=17% Similarity=0.130 Sum_probs=77.6
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCC--CccccHHHHHHHHHHhCCe-EEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEH--QRVVTLERHAKLAQSLHLH-SFAVSARTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--~~~~~~~~~~~~~~~~~~~-~~~~Sa~~~~~ 107 (158)
+++|||++++.+|+.+ ..|+..+...... +|+++|+||+|+.. .+.+..+++..+++.+++. ++++||++|.|
T Consensus 98 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~g 174 (194)
T 3reg_A 98 VLLCFAVNNRTSFDNISTKWEPEIKHYIDT---AKTVLVGLKVDLRKDGSDDVTKQEGDDLCQKLGCVAYIEASSVAKIG 174 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SEEEEEEECGGGCCTTTTCCCHHHHHHHHHHHTCSCEEECBTTTTBS
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhccCCCCcccHHHHHHHHHhcCCCEEEEeecCCCCC
Confidence 9999999999999997 6899888866443 99999999999974 3567788999999999988 99999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2600 108 CWVNTRTPEINPLKY 122 (158)
Q Consensus 108 i~~lf~~l~~~~~~~ 122 (158)
|+++|+.+++.+.+.
T Consensus 175 i~~l~~~l~~~i~~~ 189 (194)
T 3reg_A 175 LNEVFEKSVDCIFSN 189 (194)
T ss_dssp HHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999999988654
No 40
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.81 E-value=2.3e-19 Score=126.14 Aligned_cols=90 Identities=24% Similarity=0.213 Sum_probs=79.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+.++..... .. +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.|+.+
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 158 (181)
T 3t5g_A 81 YILVYSVTSIKSFEVIKVIHGKLLDMVGKVQ--IPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESSAKENQTAVD 158 (181)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHC------CCEEEEEECTTCTTTCCSCHHHHHHHHHHTTCEEEECCTTSHHHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccchhcceecHHHHHHHHHHhCCcEEEEecCCCCCHHH
Confidence 9999999999999999999999875432 23 89999999999987778888999999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|+.+++.+....
T Consensus 159 l~~~l~~~~~~~~ 171 (181)
T 3t5g_A 159 VFRRIILEAEKMD 171 (181)
T ss_dssp HHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHhc
Confidence 9999999987653
No 41
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.81 E-value=1.9e-19 Score=128.87 Aligned_cols=88 Identities=28% Similarity=0.355 Sum_probs=76.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC------CCccccHHHHHHHHHHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME------HQRVVTLERHAKLAQSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~------~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 105 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+. ..+.+..+.++.+++.+++.++++||++|
T Consensus 104 iilv~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~SA~~g 181 (199)
T 2p5s_A 104 VLLLYDVTCEKSFLNIREWVDMIEDAAHET--VPIMLVGNKADIRDTAATEGQKCVPGHFGEKLAMTYGALFCETSAKDG 181 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHC-----CCEEEEEECGGGHHHHHHTTCCCCCHHHHHHHHHHHTCEEEECCTTTC
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHhcCCC--CCEEEEEECcccccccccccccccCHHHHHHHHHHcCCeEEEeeCCCC
Confidence 999999999999999999999988665433 8999999999985 34566778888999999999999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.||+++|..+.+.+.+
T Consensus 182 ~gv~el~~~l~~~i~~ 197 (199)
T 2p5s_A 182 SNIVEAVLHLAREVKK 197 (199)
T ss_dssp TTHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988753
No 42
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.81 E-value=2.5e-19 Score=124.00 Aligned_cols=87 Identities=22% Similarity=0.275 Sum_probs=77.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+...... .|+++|+||+|+...+.+..++++.+++.+++.++++||+++.|++++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 157 (168)
T 1z2a_A 81 CVLVFSTTDRESFEAISSWREKVVAEVGD---IPTALVQNKIDLLDDSCIKNEEAEGLAKRLKLRFYRTSVKEDLNVSEV 157 (168)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCS---CCEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEECBTTTTBSSHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECcccCcccccCHHHHHHHHHHcCCeEEEEecCCCCCHHHH
Confidence 89999999999999999999999865432 899999999999766667778888999999999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|+.+.+.+.+
T Consensus 158 ~~~l~~~~~~ 167 (168)
T 1z2a_A 158 FKYLAEKHLQ 167 (168)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHHhh
Confidence 9999987753
No 43
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.81 E-value=1.5e-19 Score=129.65 Aligned_cols=90 Identities=26% Similarity=0.222 Sum_probs=78.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+.... ... +|+++|+||+|+...+.+...++..+++.+++.++++||++|.||++
T Consensus 99 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~v~~ 176 (201)
T 3oes_A 99 YVLVYSVTSLHSFQVIESLYQKLHEGHGKTR--VPVVLVGNKADLSPEREVQAVEGKKLAESWGATFMESSARENQLTQG 176 (201)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHC-----C--CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEECCTTCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccCccccccCHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 899999999999999999999998542 222 89999999999987777888899999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|+.|.+.+.+..
T Consensus 177 l~~~l~~~i~~~~ 189 (201)
T 3oes_A 177 IFTKVIQEIARVE 189 (201)
T ss_dssp HHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhhh
Confidence 9999999987654
No 44
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.81 E-value=5.3e-19 Score=125.79 Aligned_cols=86 Identities=17% Similarity=0.241 Sum_probs=75.7
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+. .|+..+...... +|+++|+||+|+... +.+..+++..+++.++. .|
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 169 (194)
T 2atx_A 93 FLICFSVVNPASFQNVKEEWVPELKEYAPN---VPFLLIGTQIDLRDDPKTLARLNDMKEKPICVEQGQKLAKEIGACCY 169 (194)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECTTSTTCHHHHHHHTTTTCCCCCHHHHHHHHHHHTCSCE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhcccccchhhcccccCcccCHHHHHHHHHHcCCcEE
Confidence 99999999999999997 899999876432 999999999999653 35677888999999997 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+++||++|.||+++|+.+.+.+.
T Consensus 170 ~~~Sa~~g~gi~~l~~~l~~~i~ 192 (194)
T 2atx_A 170 VECSALTQKGLKTVFDEAIIAIL 192 (194)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHH
T ss_pred EEeeCCCCCCHHHHHHHHHHHHh
Confidence 99999999999999999998875
No 45
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.81 E-value=2.9e-19 Score=123.79 Aligned_cols=87 Identities=32% Similarity=0.337 Sum_probs=76.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC---ccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ---RVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~---~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+... +.+..++...+++.+++.++++||++|.|+
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi 156 (170)
T 1ek0_A 79 ALVVYDVTKPQSFIKARHWVKELHEQASKD--IIIALVGNKIDXLQEGGERKVAREEGEKLAEEKGLLFFETSAKTGENV 156 (170)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHSCTT--CEEEEEEECGGGGGSSCCCCSCHHHHHHHHHHHTCEEEECCTTTCTTH
T ss_pred EEEEEecCChHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCCccccccccCCCHHHHHHHHHHcCCEEEEEeCCCCCCH
Confidence 999999999999999999999998665433 999999999998654 567778888999999999999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 109 WVNTRTPEINPL 120 (158)
Q Consensus 109 ~~lf~~l~~~~~ 120 (158)
+++|+.+.+.+.
T Consensus 157 ~~l~~~l~~~i~ 168 (170)
T 1ek0_A 157 NDVFLGIGEKIP 168 (170)
T ss_dssp HHHHHHHHTTSC
T ss_pred HHHHHHHHHHHh
Confidence 999999987653
No 46
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.81 E-value=2.9e-19 Score=129.40 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=77.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||+++..+|+.+..|+..+....... +|+++|+||+|+...+.+..+....+++..++.++++||++|.||+++
T Consensus 88 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l 165 (218)
T 4djt_A 88 AILFFDVTSRITCQNLARWVKEFQAVVGNE--APIVVCANKIDIKNRQKISKKLVMEVLKGKNYEYFEISAKTAHNFGLP 165 (218)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCSS--SCEEEEEECTTCC----CCHHHHHHHTTTCCCEEEEEBTTTTBTTTHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCccccccCHHHHHHHHHHcCCcEEEEecCCCCCHHHH
Confidence 899999999999999999999998665444 899999999999876677788888888888999999999999999999
Q ss_pred HHHHHHHHHHhH
Q psy2600 112 TRTPEINPLKYL 123 (158)
Q Consensus 112 f~~l~~~~~~~~ 123 (158)
|+.|.+.+.+..
T Consensus 166 ~~~l~~~~~~~~ 177 (218)
T 4djt_A 166 FLHLARIFTGRP 177 (218)
T ss_dssp HHHHHHHHHCCT
T ss_pred HHHHHHHHhccc
Confidence 999999987653
No 47
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.81 E-value=4.4e-19 Score=122.50 Aligned_cols=88 Identities=20% Similarity=0.203 Sum_probs=78.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..+++..+++.++++++++||++|.|+++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 156 (168)
T 1u8z_A 79 FLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNKSDLEDKRQVSVEEAKNRADQWNVNYVETSAKTRANVDK 156 (168)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTT--SCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECCTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999999999986543 23 89999999999976666778889999999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+|+++.+.+.+
T Consensus 157 l~~~l~~~i~~ 167 (168)
T 1u8z_A 157 VFFDLMREIRA 167 (168)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 48
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.80 E-value=5.6e-19 Score=123.61 Aligned_cols=88 Identities=34% Similarity=0.518 Sum_probs=76.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC---CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK---SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..+++..+++.++++++++||++|.||
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi 160 (178)
T 2hxs_A 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQ--PLVALVGNKIDLEHMRTIKPEKHLRFCQENGFSSHFVSAKTGDSV 160 (178)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHHHHTCC--CEEEEEEECGGGGGGCSSCHHHHHHHHHHHTCEEEEECTTTCTTH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhcccCCC--CeEEEEEEccccccccccCHHHHHHHHHHcCCcEEEEeCCCCCCH
Confidence 9999999999999999999999886421 21 458999999999766667778889999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2600 109 WVNTRTPEINPLK 121 (158)
Q Consensus 109 ~~lf~~l~~~~~~ 121 (158)
+++|+++.+.+.+
T Consensus 161 ~~l~~~l~~~~~~ 173 (178)
T 2hxs_A 161 FLCFQKVAAEILG 173 (178)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 49
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.80 E-value=7.9e-19 Score=121.39 Aligned_cols=87 Identities=22% Similarity=0.202 Sum_probs=76.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh-CCeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL-HLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~~~~~~~Sa~~~~~i~ 109 (158)
+++|||++++.+|+.+..|+..+.... ... +|+++|+||+|+...+.+..+++..+++.+ +.+++++||++|.|++
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~ 155 (167)
T 1c1y_A 78 FALVYSITAQSTFNDLQDLREQILRVKDTED--VPMILVGNKCDLEDERVVGKEQGQNLARQWCNCAFLESSAKSKINVN 155 (167)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSC--CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTSCEEEECBTTTTBSHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhCcCC--CcEEEEEECccccccccCCHHHHHHHHHHccCCcEEEecCCCCCCHH
Confidence 999999999999999999999888543 223 899999999999876677788888999887 7899999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 110 VNTRTPEINPL 120 (158)
Q Consensus 110 ~lf~~l~~~~~ 120 (158)
++|+++.+.+.
T Consensus 156 ~l~~~l~~~i~ 166 (167)
T 1c1y_A 156 EIFYDLVRQIN 166 (167)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999998763
No 50
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.80 E-value=1.2e-18 Score=124.65 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=80.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..+++..+++.+++.++++||++|.||++
T Consensus 89 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 166 (206)
T 2bov_A 89 FLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 166 (206)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSC--CCEEEEEECTTCGGGCCSCHHHHHHHHHHHTCEEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEeccCccccccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Confidence 9999999999999999999999986543 23 89999999999987666778889999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|+++++.+.+..
T Consensus 167 l~~~l~~~i~~~~ 179 (206)
T 2bov_A 167 VFFDLMREIRARK 179 (206)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcc
Confidence 9999999987753
No 51
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.80 E-value=8.7e-19 Score=123.26 Aligned_cols=90 Identities=20% Similarity=0.187 Sum_probs=79.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..+++..+++.+++.++++||+++.||++
T Consensus 93 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 170 (187)
T 2a9k_A 93 FLCVFSITEMESFAATADFREQILRVKEDEN--VPFLLVGNKSDLEDKRQVSVEEAKNRAEQWNVNYVETSAKTRANVDK 170 (187)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHCCTT--CCEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccccccCccCHHHHHHHHHHcCCeEEEeCCCCCCCHHH
Confidence 9999999999999999999999886543 23 89999999999976666778889999999999999999999999999
Q ss_pred HHHHHHHHHHHhH
Q psy2600 111 NTRTPEINPLKYL 123 (158)
Q Consensus 111 lf~~l~~~~~~~~ 123 (158)
+|++|.+.+.+..
T Consensus 171 l~~~l~~~i~~~~ 183 (187)
T 2a9k_A 171 VFFDLMREIRARK 183 (187)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999887653
No 52
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.80 E-value=1.7e-18 Score=124.61 Aligned_cols=90 Identities=29% Similarity=0.391 Sum_probs=79.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+. .+.+..++...+++.++++++++||+++.||+++
T Consensus 96 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 172 (213)
T 3cph_A 96 IILVYDVTDERTFTNIKQWFKTVNEHANDE--AQLLLVGNKSDME-TRVVTADQGEALAKELGIPFIESSAKNDDNVNEI 172 (213)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHTTTC--SEEEEEEECTTCS-SCCSCHHHHHHHHHHHTCCEEECBTTTTBSSHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CCEEEEEECCCCc-ccccCHHHHHHHHHHcCCEEEEEeCCCCCCHHHH
Confidence 999999999999999999999998665433 9999999999994 4556677888899999999999999999999999
Q ss_pred HHHHHHHHHHhHh
Q psy2600 112 TRTPEINPLKYLQ 124 (158)
Q Consensus 112 f~~l~~~~~~~~~ 124 (158)
|+.|.+.+.+...
T Consensus 173 ~~~l~~~~~~~~~ 185 (213)
T 3cph_A 173 FFTLAKLIQEKID 185 (213)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 9999999887653
No 53
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.80 E-value=3.6e-19 Score=126.31 Aligned_cols=88 Identities=13% Similarity=0.188 Sum_probs=74.3
Q ss_pred EEEEEECC------ChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCC
Q psy2600 32 VIFMYDIT------SGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSART 104 (158)
Q Consensus 32 ~i~v~d~~------~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~ 104 (158)
+|+|||++ +..+|+.+..|+.++..... . +|+++|+||+|+... +..+++..+++.+++ .++++||++
T Consensus 101 ~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~-~--~piilv~NK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~Sa~~ 175 (198)
T 3t1o_A 101 IVFVADSAPNRLRANAESMRNMRENLAEYGLTLD-D--VPIVIQVNKRDLPDA--LPVEMVRAVVDPEGKFPVLEAVATE 175 (198)
T ss_dssp EEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTT-S--SCEEEEEECTTSTTC--CCHHHHHHHHCTTCCSCEEECBGGG
T ss_pred EEEEEECCcchhhHhHHHHHHHHHHHHhhccccC-C--CCEEEEEEchhcccc--cCHHHHHHHHHhcCCceEEEEecCC
Confidence 99999999 56788888889888753222 2 999999999999753 567788899999998 999999999
Q ss_pred CCCHHHHHHHHHHHHHHhHh
Q psy2600 105 GDNCWVNTRTPEINPLKYLQ 124 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~~~ 124 (158)
|.||+++|++|++.+.+...
T Consensus 176 ~~gv~~l~~~l~~~i~~~~~ 195 (198)
T 3t1o_A 176 GKGVFETLKEVSRLVLARVA 195 (198)
T ss_dssp TBTHHHHHHHHHHHHHHHHC
T ss_pred CcCHHHHHHHHHHHHHHHhh
Confidence 99999999999999887643
No 54
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.80 E-value=9e-19 Score=124.99 Aligned_cols=89 Identities=28% Similarity=0.336 Sum_probs=79.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCC-CHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD-NCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~-~i~ 109 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..+++..+++.+++.++++||++|. ||+
T Consensus 102 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~g~~gi~ 179 (196)
T 2atv_A 102 FVLVYDITDRGSFEEVLPLKNILDEIKKPKN--VTLILVGNKADLDHSRQVSTEEGEKLATELACAFYECSACTGEGNIT 179 (196)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTSC--CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSEEEECCTTTCTTCHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhhCCCC--CcEEEEEECcccccccccCHHHHHHHHHHhCCeEEEECCCcCCcCHH
Confidence 8999999999999999999999886432 23 8999999999998766777888999999999999999999999 999
Q ss_pred HHHHHHHHHHHHh
Q psy2600 110 VNTRTPEINPLKY 122 (158)
Q Consensus 110 ~lf~~l~~~~~~~ 122 (158)
++|+.|.+.+.+.
T Consensus 180 ~l~~~l~~~i~~~ 192 (196)
T 2atv_A 180 EIFYELCREVRRR 192 (196)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhh
Confidence 9999999988654
No 55
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.80 E-value=1.7e-20 Score=134.42 Aligned_cols=108 Identities=27% Similarity=0.427 Sum_probs=87.8
Q ss_pred CCcceEEEEEEECCCCCCeE------------------------------------------------------------
Q psy2600 12 DNYEIQLKVVLLGDPSCGKI------------------------------------------------------------ 31 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~~vgk~------------------------------------------------------------ 31 (158)
...+..+||+++|.+++|||
T Consensus 28 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d 107 (199)
T 3l0i_B 28 PEYDYLFKLLLIGDSGVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRTITSSYYRGAH 107 (199)
T ss_dssp CCCSEEEEEEEECCTTSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEETTEEEEEEEECCTTCTTCCCCSCC--CCCS
T ss_pred cccCcceEEEEECCCCCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEECCEEEEEEEEECCCcHhHHHHHHHHhhcCC
Confidence 35678899999999999998
Q ss_pred -EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 -VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 -~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++++.+++.++++++++||+++.||++
T Consensus 108 ~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~p~ilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gv~~ 185 (199)
T 3l0i_B 108 GIIVVYDVTDQESFNNVKQWLQEIDRYASEN--VNKLLVGNKCDLTTKKVVDYTTAKEFADSLGIPFLETSAKNATNVEQ 185 (199)
T ss_dssp EEEECC-CCCSHHHHHHHHHHHHHHSCC-CC--SEEEEC-CCSSCC--CCCCSCC-CHHHHTTTCCBCCCCC---HHHHH
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHhccCC--CCEEEEEECccCCccccCCHHHHHHHHHHcCCeEEEEECCCCCCHHH
Confidence 999999999999999999999998655444 99999999999986666666678888999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+|++|.+.+.+
T Consensus 186 l~~~l~~~l~~ 196 (199)
T 3l0i_B 186 SFMTMAAEIKK 196 (199)
T ss_dssp HHHHHTTTTTT
T ss_pred HHHHHHHHHHH
Confidence 99999987754
No 56
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.79 E-value=8.4e-19 Score=122.53 Aligned_cols=87 Identities=30% Similarity=0.421 Sum_probs=77.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+....... +|+++|+||+|+...+.+..++...+++.+++.++++||+++.|++++
T Consensus 90 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 167 (179)
T 2y8e_A 90 AVVVYDITNTNSFHQTSKWIDDVRTERGSD--VIIMLVGNKTDLSDKRQVSTEEGERKAKELNVMFIETSAKAGYNVKQL 167 (179)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTTS--SEEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEEEBTTTTBSHHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECCcccccCcCCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 999999999999999999999988654433 999999999999876677778888899999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|+.+.+.+.
T Consensus 168 ~~~l~~~~~ 176 (179)
T 2y8e_A 168 FRRVAAALP 176 (179)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHh
Confidence 999988764
No 57
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.79 E-value=8.9e-19 Score=120.83 Aligned_cols=88 Identities=23% Similarity=0.171 Sum_probs=77.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...+.+..++...+++.++++++++||++|.|+++
T Consensus 78 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 155 (167)
T 1kao_A 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEK--VPVILVGNKVDLESEREVSSSEGRALAEEWGCPFMETSAKSKTMVDE 155 (167)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTTSC--CCEEEEEECGGGGGGCCSCHHHHHHHHHHHTSCEEEECTTCHHHHHH
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECCcccccccCCHHHHHHHHHHhCCCEEEecCCCCcCHHH
Confidence 9999999999999999999998875432 23 89999999999976667778888899999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+|+.+.+.+.+
T Consensus 156 l~~~l~~~~~~ 166 (167)
T 1kao_A 156 LFAEIVRQMNY 166 (167)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHhh
Confidence 99999987753
No 58
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.79 E-value=3e-18 Score=119.97 Aligned_cols=89 Identities=24% Similarity=0.355 Sum_probs=75.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC----CCCCcEEEEEEeCCCCC-CCccccHHHHHHHHH-HhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK----SSTPTYVALVANKGDME-HQRVVTLERHAKLAQ-SLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~-~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+. ..+.+..+++..+++ ..+..++++||++|
T Consensus 85 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~~Sa~~~ 162 (182)
T 1ky3_A 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPET--FPFVILGNKIDAEESKKIVSEKSAQELAKSLGDIPLFLTSAKNA 162 (182)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSCTTT--CCEEEEEECTTSCGGGCCSCHHHHHHHHHHTTSCCEEEEBTTTT
T ss_pred EEEEEECCChHHHHHHHHHHHHHHHHhcccCcCC--CcEEEEEECCccccccccCCHHHHHHHHHhcCCCeEEEEecCCC
Confidence 8999999999999999999999885432 22 8999999999995 344566778888888 45688999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2600 106 DNCWVNTRTPEINPLKY 122 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~ 122 (158)
.||+++|+.+.+.+.+.
T Consensus 163 ~gi~~l~~~l~~~~~~~ 179 (182)
T 1ky3_A 163 INVDTAFEEIARSALQQ 179 (182)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHh
Confidence 99999999999988764
No 59
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.79 E-value=6e-19 Score=124.73 Aligned_cols=87 Identities=17% Similarity=0.261 Sum_probs=75.0
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhC-CeE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLH-LHS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~-~~~ 97 (158)
+++|||++++.+|+.+ ..|+..+...... +|+++|+||+|+... +.+..+++..+++.++ ..|
T Consensus 82 ~i~v~d~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 158 (184)
T 1m7b_A 82 VLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 158 (184)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEEcchhhcchhhHhhhhhcccCCCCHHHHHHHHHHcCCcEE
Confidence 9999999999999998 6899988866433 999999999999642 4567788999999888 789
Q ss_pred EEEeCC-CCCCHHHHHHHHHHHHHH
Q psy2600 98 FAVSAR-TGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 98 ~~~Sa~-~~~~i~~lf~~l~~~~~~ 121 (158)
+++||+ ++.||+++|+.+++.+..
T Consensus 159 ~e~Sa~~~~~gi~~l~~~i~~~~l~ 183 (184)
T 1m7b_A 159 IECSALQSENSVRDIFHVATLACVN 183 (184)
T ss_dssp EECBTTTBHHHHHHHHHHHHHHHHT
T ss_pred EEeeecCCCcCHHHHHHHHHHHHhc
Confidence 999999 689999999999988753
No 60
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.78 E-value=4.6e-18 Score=119.85 Aligned_cols=90 Identities=21% Similarity=0.215 Sum_probs=78.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+.. +.+..+....+++.++++++++||++|.|+++
T Consensus 79 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gi~~ 155 (189)
T 4dsu_A 79 FLCVFAINNTKSFEDIHHYREQIKRVKDSED--VPMVLVGNKCDLPS-RTVDTKQAQDLARSYGIPFIETSAKTRQGVDD 155 (189)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHTTCSC--CCEEEEEECTTSSS-CSSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEECccCcc-cccCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 8999999999999999999999986432 23 89999999999974 45567788999999999999999999999999
Q ss_pred HHHHHHHHHHHhHh
Q psy2600 111 NTRTPEINPLKYLQ 124 (158)
Q Consensus 111 lf~~l~~~~~~~~~ 124 (158)
+|+++.+.+.+...
T Consensus 156 l~~~l~~~~~~~~~ 169 (189)
T 4dsu_A 156 AFYTLVREIRKHKE 169 (189)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Confidence 99999999877643
No 61
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=123.58 Aligned_cols=89 Identities=19% Similarity=0.293 Sum_probs=77.4
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCC------------CccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEH------------QRVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+. .|+..+...... +|+++|+||+|+.. .+.+..+++..+++.++. .|
T Consensus 95 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 171 (201)
T 2q3h_A 95 FLLCFSVVSPSSFQNVSEKWVPEIRCHCPK---APIILVGTQSDLREDVKVLIELDKCKEKPVPEEAAKLLAEEIKAASY 171 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSS---SCEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEECHhhhhchhhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 99999999999999997 799998876443 99999999999864 245677788899999887 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
+++||++|.||+++|+.+++.+.+..
T Consensus 172 ~~~Sa~~g~gi~~l~~~l~~~~~~~~ 197 (201)
T 2q3h_A 172 IECSALTQKNLKEVFDAAIVAGIQYS 197 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHHHH
T ss_pred EEEecCCCCCHHHHHHHHHHHHhccc
Confidence 99999999999999999999887653
No 62
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.78 E-value=2.5e-18 Score=123.06 Aligned_cols=90 Identities=27% Similarity=0.364 Sum_probs=70.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC---CCCCcEEEEEEeCCCCCC-CccccHHHHHHHHHHhCCeEEEEeCCC-CC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK---SSTPTYVALVANKGDMEH-QRVVTLERHAKLAQSLHLHSFAVSART-GD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~~Sa~~-~~ 106 (158)
+|+|||++++.+|+.+..|+..+..... .. +|+++|+||+|+.. .+.+..+++..+++.+++.++++||++ +.
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~--~piilv~nK~Dl~~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~ 177 (208)
T 2yc2_C 100 AILVFDVSSMESFESCKAWFELLKSARPDRERP--LRAVLVANKTDLPPQRHQVRLDMAQDWATTNTLDFFDVSANPPGK 177 (208)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHCSCTTSC--CEEEEEEECC-------CCCHHHHHHHHHHTTCEEEECCC-----
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhhcccccC--CcEEEEEECcccchhhccCCHHHHHHHHHHcCCEEEEeccCCCCc
Confidence 9999999999999999999999987654 33 99999999999987 667778899999999999999999999 99
Q ss_pred CHHHHHHHHHHHHHHhH
Q psy2600 107 NCWVNTRTPEINPLKYL 123 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~~ 123 (158)
||.++|+.+.+.+.+..
T Consensus 178 gi~~l~~~i~~~~~~~~ 194 (208)
T 2yc2_C 178 DADAPFLSIATTFYRNY 194 (208)
T ss_dssp --CHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999999887654
No 63
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.78 E-value=8.2e-19 Score=126.67 Aligned_cols=87 Identities=18% Similarity=0.268 Sum_probs=75.1
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCC------------CccccHHHHHHHHHHhC-CeE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEH------------QRVVTLERHAKLAQSLH-LHS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~------------~~~~~~~~~~~~~~~~~-~~~ 97 (158)
+|+|||++++.+|+.+ ..|+..+...... +|+++|+||+|+.. .+.+..+++..+++.++ ..|
T Consensus 103 ~ilv~D~~~~~s~~~~~~~~~~~i~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 179 (205)
T 1gwn_A 103 VLICFDISRPETLDSVLKKWKGEIQEFCPN---TKMLLVGCKSDLRTDVSTLVELSNHRQTPVSYDQGANMAKQIGAATY 179 (205)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CEEEEEEECGGGGGCHHHHHHHHTTTCCCCCHHHHHHHHHHHTCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCC---CCEEEEEechhhccchhhhhhhcccccCCCCHHHHHHHHHHcCCCEE
Confidence 9999999999999998 7899998866433 99999999999964 24567788899999887 689
Q ss_pred EEEeCC-CCCCHHHHHHHHHHHHHH
Q psy2600 98 FAVSAR-TGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 98 ~~~Sa~-~~~~i~~lf~~l~~~~~~ 121 (158)
++|||+ ++.||+++|+.+++.+..
T Consensus 180 ~e~SAk~~~~gv~~lf~~l~~~~l~ 204 (205)
T 1gwn_A 180 IECSALQSENSVRDIFHVATLACVN 204 (205)
T ss_dssp EECCTTTCHHHHHHHHHHHHHHHHH
T ss_pred EEeeeccCCcCHHHHHHHHHHHHhh
Confidence 999999 689999999999988764
No 64
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.78 E-value=1.3e-18 Score=120.71 Aligned_cols=89 Identities=21% Similarity=0.144 Sum_probs=75.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+++.+..|+..+.+.......+|+++|+||+|+...+.+...+...+++.++++++++||++|.|++++
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 157 (172)
T 2erx_A 78 FILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAEALARTWKCAFMETSAKLNHNVKEL 157 (172)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGGCCSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccccccCHHHHHHHHHHhCCeEEEecCCCCcCHHHH
Confidence 99999999999999999999888765321112899999999999766667777888899999999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|+++.+.+.
T Consensus 158 ~~~l~~~~~ 166 (172)
T 2erx_A 158 FQELLNLEK 166 (172)
T ss_dssp HHHHHHTCC
T ss_pred HHHHHHHHh
Confidence 999998764
No 65
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.78 E-value=4.3e-18 Score=118.95 Aligned_cols=87 Identities=20% Similarity=0.287 Sum_probs=74.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC----CCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-HhCCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK----SSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-SLHLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 106 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+. .+.+..+++..+++ ..+..++++||++|.
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~p~i~v~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 159 (177)
T 1wms_A 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPES--FPFVILGNKIDIS-ERQVSTEEAQAWCRDNGDYPYFETSAKDAT 159 (177)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHTCSCTTT--SCEEEEEECTTCS-SCSSCHHHHHHHHHHTTCCCEEECCTTTCT
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHccccccCC--CcEEEEEECCccc-ccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 8999999999999999999999885432 22 8999999999997 44566778888888 557899999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
|++++|+.+.+.+.+
T Consensus 160 gi~~l~~~l~~~~~~ 174 (177)
T 1wms_A 160 NVAAAFEEAVRRVLA 174 (177)
T ss_dssp THHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHh
Confidence 999999999998764
No 66
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.78 E-value=7.7e-19 Score=127.64 Aligned_cols=112 Identities=22% Similarity=0.338 Sum_probs=95.1
Q ss_pred ccccCCCCcceEEEEEEECCCCCCeE------------------------------------------------------
Q psy2600 6 MLNLHNDNYEIQLKVVLLGDPSCGKI------------------------------------------------------ 31 (158)
Q Consensus 6 ~~~~~~~~~~~~~ki~~~G~~~vgk~------------------------------------------------------ 31 (158)
|..+........+||+++|.+++|||
T Consensus 4 ~~~~~~~~~~~~~ki~v~G~~~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 83 (221)
T 3gj0_A 4 MASAAQGEPQVQFKLVLVGDGGTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTNRGPIKFNVWDTAGQEKFGGLRDG 83 (221)
T ss_dssp --CCSTTCCCCEEEEEEEECTTSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEETTEEEEEEEEEECSGGGTSCCCHH
T ss_pred cccccCCCcccceEEEEECCCCCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEeCCChHHHhHHHHH
Confidence 44555667778899999999999998
Q ss_pred -------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCC
Q psy2600 32 -------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSART 104 (158)
Q Consensus 32 -------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 104 (158)
+++|||++++.+|+.+..|+..+...... +|+++|+||+|+...... .+...+++..++.|+++||++
T Consensus 84 ~~~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~Sa~~ 158 (221)
T 3gj0_A 84 YYIQAQCAIIMFDVTSRVTYKNVPNWHRDLVRVCEN---IPIVLCGNKVDIKDRKVK--AKSIVFHRKKNLQYYDISAKS 158 (221)
T ss_dssp HHTTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSTT---CCEEEEEECTTSSSCSSC--GGGCCHHHHHTCEEEECBGGG
T ss_pred HHhcCCEEEEEEECCCHHHHHHHHHHHHHHHHhCCC---CCEEEEEECCcccccccc--HHHHHHHHHcCCEEEEEeCCC
Confidence 99999999999999999999999976543 899999999999754332 256667888899999999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2600 105 GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~ 122 (158)
|.||+++|++|.+.+...
T Consensus 159 ~~gi~~l~~~l~~~l~~~ 176 (221)
T 3gj0_A 159 NYNFEKPFLWLARKLIGD 176 (221)
T ss_dssp TBTTTHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHhC
Confidence 999999999999988764
No 67
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.78 E-value=2e-18 Score=122.47 Aligned_cols=87 Identities=28% Similarity=0.367 Sum_probs=74.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCC---CC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTG---DN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~---~~ 107 (158)
+|+|||++++.+|+.+..|+..+.... ... +|+++|+||+|+...+.+..++...+++.+++.++++||+++ .|
T Consensus 97 iilv~D~~~~~s~~~~~~~~~~i~~~~~~~~--~piilv~nK~Dl~~~~~v~~~~~~~~~~~~~~~~~~~Sa~~~~~~~~ 174 (189)
T 1z06_A 97 VVFVYDMTNMASFHSLPAWIEECKQHLLAND--IPRILVGNKCDLRSAIQVPTDLAQKFADTHSMPLFETSAKNPNDNDH 174 (189)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHCCCSC--CCEEEEEECTTCGGGCCSCHHHHHHHHHHTTCCEEECCSSSGGGGSC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCCC--CCEEEEEECccccccceeCHHHHHHHHHHcCCEEEEEeCCcCCcccC
Confidence 999999999999999999999998653 233 899999999999776677788889999999999999999999 99
Q ss_pred HHHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINPL 120 (158)
Q Consensus 108 i~~lf~~l~~~~~ 120 (158)
|.++|+.|.+.+.
T Consensus 175 i~~l~~~l~~~i~ 187 (189)
T 1z06_A 175 VEAIFMTLAHKLK 187 (189)
T ss_dssp HHHHHHHHC----
T ss_pred HHHHHHHHHHHHh
Confidence 9999999988764
No 68
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.78 E-value=2e-18 Score=125.14 Aligned_cols=88 Identities=25% Similarity=0.315 Sum_probs=76.4
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc------------cccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQR------------VVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+. .|+..+...... +|+++|+||+|+.... .+..+++..+++.++. .+
T Consensus 109 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 185 (214)
T 2j1l_A 109 LLLCFDVTSPNSFDNIFNRWYPEVNHFCKK---VPIIVVGCKTDLRKDKSLVNKLRRNGLEPVTYHRGQEMARSVGAVAY 185 (214)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSS---CCEEEEEECGGGGSCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEChhhhccchhhhhhcccccCcccHHHHHHHHHhcCCCEE
Confidence 89999999999999996 799998866433 8999999999997542 4666788889999997 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+++||++|.||+++|+.+.+.+.+.
T Consensus 186 ~~~SA~~g~gi~el~~~l~~~~~~~ 210 (214)
T 2j1l_A 186 LECSARLHDNVHAVFQEAAEVALSS 210 (214)
T ss_dssp EECBTTTTBSHHHHHHHHHHHHHHC
T ss_pred EEecCCCCCCHHHHHHHHHHHHHHh
Confidence 9999999999999999999988754
No 69
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.78 E-value=6.2e-19 Score=123.79 Aligned_cols=86 Identities=15% Similarity=0.230 Sum_probs=74.5
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc----------ccHHHHHHHHHHhCC-eEEE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRV----------VTLERHAKLAQSLHL-HSFA 99 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~----------~~~~~~~~~~~~~~~-~~~~ 99 (158)
+++|||++++.+|+.+. .|+..+...... +|+++|+||+|+...+. +..+++..+++.++. .|++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 159 (182)
T 3bwd_D 83 FILAFSLISKASYENVSKKWIPELKHYAPG---VPIVLVGTKLDLRDDKQFFIDHPGAVPITTVQGEELKKLIGAPAYIE 159 (182)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CCEEEEEECHHHHTCHHHHHHC--CCCCCHHHHHHHHHHHTCSEEEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEechhhhcCcccccccccCCCCCHHHHHHHHHHcCCCEEEE
Confidence 99999999999999997 799998876432 89999999999865443 366788889999896 8999
Q ss_pred EeCCCCCCHHHHHHHHHHHHH
Q psy2600 100 VSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 100 ~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+||++|.||+++|+.+.+.+.
T Consensus 160 ~Sa~~~~gi~~l~~~l~~~i~ 180 (182)
T 3bwd_D 160 CSSKSQENVKGVFDAAIRVVL 180 (182)
T ss_dssp CCTTTCTTHHHHHHHHHHHHS
T ss_pred EECCCCCCHHHHHHHHHHHHh
Confidence 999999999999999998764
No 70
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.77 E-value=1.6e-18 Score=123.36 Aligned_cols=119 Identities=16% Similarity=0.127 Sum_probs=83.4
Q ss_pred cccccccCCCCcceEEEEEEECCCCCCeE---------------------------------------------------
Q psy2600 3 EVKMLNLHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------- 31 (158)
Q Consensus 3 ~~~~~~~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------- 31 (158)
++.+.....+......||+++|..++|||
T Consensus 3 ~~~~~~~~~~~~~~~~ki~v~G~~~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~ 82 (199)
T 4bas_A 3 SSHHHHHHMGQSKTKLQVVMCGLDNSGKTTIINQVKPAQSSSKHITATVGYNVETFEKGRVAFTVFDMGGAKKFRGLWET 82 (199)
T ss_dssp -------------CEEEEEEECCTTSCHHHHHHHHSCCC----CCCCCSSEEEEEEEETTEEEEEEEECCSGGGGGGGGG
T ss_pred ccccccccccCCCCCcEEEEECCCCCCHHHHHHHHhcCCCcccccccccceeEEEEEeCCEEEEEEECCCCHhHHHHHHH
Confidence 34444555667778899999999999998
Q ss_pred -------EEEEEECCChhHHhhHHHHHHHHhhhcC--------CCCCcEEEEEEeCCCCCCCccc---cHHHHHH-HHHH
Q psy2600 32 -------VIFMYDITSGQSFHSIPTWVDLFHLNRK--------SSTPTYVALVANKGDMEHQRVV---TLERHAK-LAQS 92 (158)
Q Consensus 32 -------~i~v~d~~~~~s~~~~~~~~~~~~~~~~--------~~~~~piilv~nK~Dl~~~~~~---~~~~~~~-~~~~ 92 (158)
+|+|||++++.+|+.+..|+..+..... .. +|+++|+||+|+...... ....... +++.
T Consensus 83 ~~~~~d~ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~ 160 (199)
T 4bas_A 83 YYDNIDAVIFVVDSSDHLRLCVVKSEIQAMLKHEDIRRELPGGGR--VPFLFFANKMDAAGAKTAAELVEILDLTTLMGD 160 (199)
T ss_dssp GCTTCSEEEEEEETTCGGGHHHHHHHHHHHHTSHHHHSBCTTSCB--CCEEEEEECTTSTTCCCHHHHHHHHTHHHHHTT
T ss_pred HHhcCCEEEEEEECCcHHHHHHHHHHHHHHHhChhhhhcccccCC--CCEEEEEECcCCCCCCCHHHHHHHhcchhhccC
Confidence 9999999999999999999988874311 12 899999999999754221 1111111 1134
Q ss_pred hCCeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 93 LHLHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 93 ~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
.++.+++|||++|.||+++|+.|.+.+.+..
T Consensus 161 ~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~~~ 191 (199)
T 4bas_A 161 HPFVIFASNGLKGTGVHEGFSWLQETASRQS 191 (199)
T ss_dssp SCEEEEECBTTTTBTHHHHHHHHHHHHHHHC
T ss_pred CeeEEEEeeCCCccCHHHHHHHHHHHHHHHh
Confidence 5678999999999999999999999987653
No 71
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.77 E-value=1.3e-18 Score=125.55 Aligned_cols=89 Identities=16% Similarity=0.206 Sum_probs=76.5
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc--------ccHHHHHHHHHHhCC-eEEEEe
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRV--------VTLERHAKLAQSLHL-HSFAVS 101 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--------~~~~~~~~~~~~~~~-~~~~~S 101 (158)
+|+|||++++.+|+.+. .|+..+...... +|+++|+||+|+...+. +..+++..+++.++. .|+++|
T Consensus 84 ~ilv~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~S 160 (212)
T 2j0v_A 84 FVLAFSLISKASYENVLKKWMPELRRFAPN---VPIVLVGTKLDLRDDKGYLADHTNVITSTQGEELRKQIGAAAYIECS 160 (212)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---CCEEEEEECHHHHTCHHHHHTCSSCCCHHHHHHHHHHHTCSEEEECC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEeCHHhhhCccccccccCCCCHHHHHHHHHHcCCceEEEcc
Confidence 99999999999999996 899999876432 99999999999865443 367788889999985 899999
Q ss_pred CCCCCCHHHHHHHHHHHHHHhH
Q psy2600 102 ARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~~~~~~~ 123 (158)
|++|.||+++|+.+++.+.+..
T Consensus 161 a~~g~gi~~l~~~l~~~~~~~~ 182 (212)
T 2j0v_A 161 SKTQQNVKAVFDTAIKVVLQPP 182 (212)
T ss_dssp TTTCTTHHHHHHHHHHHHHCC-
T ss_pred CCCCCCHHHHHHHHHHHHhhhh
Confidence 9999999999999999887653
No 72
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.77 E-value=1.1e-17 Score=118.65 Aligned_cols=88 Identities=24% Similarity=0.293 Sum_probs=76.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+|+|||++++.+|+.+..|+..+..... .. +|+++|+||+|+.. +.+..+++..+++.+++.++++||+++.||++
T Consensus 91 ii~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 167 (195)
T 1x3s_A 91 VILVYDVTRRDTFVKLDNWLNELETYCTRND--IVNMLVGNKIDKEN-REVDRNEGLKFARKHSMLFIEASAKTCDGVQC 167 (195)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHTTCCSCSC--CEEEEEEECTTSSS-CCSCHHHHHHHHHHTTCEEEECCTTTCTTHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCcCC--CcEEEEEECCcCcc-cccCHHHHHHHHHHcCCEEEEecCCCCCCHHH
Confidence 8999999999999999999999986432 22 89999999999953 45667788899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|+.|.+.+.+.
T Consensus 168 l~~~l~~~~~~~ 179 (195)
T 1x3s_A 168 AFEELVEKIIQT 179 (195)
T ss_dssp HHHHHHHHHHTS
T ss_pred HHHHHHHHHHhh
Confidence 999999988753
No 73
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.77 E-value=5.1e-18 Score=121.66 Aligned_cols=87 Identities=20% Similarity=0.260 Sum_probs=75.0
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+ ..|+..+...... +|+++|+||+|+... +.+..+++..+++..+. .+
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (201)
T 2gco_A 100 ILMCFSIDSPDSLENIPEKWTPEVKHFCPN---VPIILVGNKKDLRQDEHTRRELAKMKQEPVRSEEGRDMANRISAFGY 176 (201)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECGGGTTCHHHHHHHHTTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEecHHhhcCccchhhhcccccCcCCHHHHHHHHHhCCCcEE
Confidence 9999999999999999 6898888865433 899999999999754 34667788889999887 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+++||++|.||+++|+.|.+.+.+
T Consensus 177 ~~~SA~~g~gi~~l~~~i~~~~l~ 200 (201)
T 2gco_A 177 LECSAKTKEGVREVFEMATRAGLQ 200 (201)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhc
Confidence 999999999999999999987653
No 74
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.77 E-value=8e-18 Score=120.56 Aligned_cols=89 Identities=24% Similarity=0.346 Sum_probs=75.5
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC----CCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-HhCCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK----SSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-SLHLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~----~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-~~~~~~~~~Sa~~~~ 106 (158)
+|+|||++++.+|+.+..|+..+..... .. +|+++|+||+|+. .+.+..+++..+++ ..+..++++||++|.
T Consensus 84 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~-~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~ 160 (207)
T 1vg8_A 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPEN--FPFVVLGNKIDLE-NRQVATKRAQAWCYSKNNIPYFETSAKEAI 160 (207)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHHCCSSGGG--SCEEEEEECTTSS-CCCSCHHHHHHHHHHTTSCCEEECBTTTTB
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcccccCCC--CcEEEEEECCCCc-ccccCHHHHHHHHHhcCCceEEEEeCCCCC
Confidence 8999999999999999999998875432 12 8999999999997 34556677888887 567899999999999
Q ss_pred CHHHHHHHHHHHHHHhH
Q psy2600 107 NCWVNTRTPEINPLKYL 123 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~~ 123 (158)
||+++|+.|.+.+.+..
T Consensus 161 gi~~l~~~l~~~~~~~~ 177 (207)
T 1vg8_A 161 NVEQAFQTIARNALKQE 177 (207)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhc
Confidence 99999999999887654
No 75
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.77 E-value=1.1e-17 Score=115.14 Aligned_cols=87 Identities=21% Similarity=0.237 Sum_probs=75.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||+++..+++.+..|+..+..... .. +|+++|+||+|+.. +....++...+++.++++++++||+++.|+++
T Consensus 78 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~--~p~iiv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 154 (166)
T 2ce2_X 78 FLCVFAINNTKSFEDIHQYREQIKRVKDSDD--VPMVLVGNKSDLAA-RTVESRQAQDLARSYGIPYIETSAKTRQGVED 154 (166)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSC--CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEEECTTTCTTHHH
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHhcCCCC--CcEEEEEEchhhhh-cccCHHHHHHHHHHcCCeEEEecCCCCCCHHH
Confidence 9999999999999999999999886543 23 89999999999875 44567788889999999999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+|+++.+.+.+
T Consensus 155 l~~~l~~~~~~ 165 (166)
T 2ce2_X 155 AFYTLVREIRQ 165 (166)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHh
Confidence 99999988753
No 76
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.77 E-value=1.2e-17 Score=118.25 Aligned_cols=88 Identities=22% Similarity=0.255 Sum_probs=77.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC-CCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK-SSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~-~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
+++|||+++..+|+.+..|+..+..... .. +|+++|+||+|+.. +.+..+++..+++.+++.++++||+++.|+++
T Consensus 96 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~--~p~ilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~ 172 (190)
T 3con_A 96 FLCVFAINNSKSFADINLYREQIKRVKDSDD--VPMVLVGNKCDLPT-RTVDTKQAHELAKSYGIPFIETSAKTRQGVED 172 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHHHTCSC--CCEEEEEECTTCSC-CCSCHHHHHHHHHHHTCCEEECCTTTCTTHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhCCCC--CeEEEEEECCcCCc-ccCCHHHHHHHHHHcCCeEEEEeCCCCCCHHH
Confidence 8999999999999999999999886543 22 89999999999975 45567788899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy2600 111 NTRTPEINPLKY 122 (158)
Q Consensus 111 lf~~l~~~~~~~ 122 (158)
+|++|.+.+.+.
T Consensus 173 l~~~l~~~~~~~ 184 (190)
T 3con_A 173 AFYTLVREIRQY 184 (190)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999988754
No 77
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.76 E-value=3.4e-18 Score=120.25 Aligned_cols=87 Identities=17% Similarity=0.183 Sum_probs=75.4
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+. .|+..+...... +|+++|+||+|+... +.+..+++..+++.++. .+
T Consensus 80 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 156 (186)
T 1mh1_A 80 SLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 156 (186)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTT---SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEECCChhhHHHHHHHHHHHHHHhCCC---CCEEEEeEcccccccchhhhhhcccccccCCHHHHHHHHHhcCCcEE
Confidence 99999999999999997 799998876442 899999999998643 45667788889999886 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+++||++|.||+++|+.+.+.+.+
T Consensus 157 ~~~Sa~~g~gi~~l~~~l~~~~~~ 180 (186)
T 1mh1_A 157 LECSALTQRGLKTVFDEAIRAVLC 180 (186)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHSC
T ss_pred EEecCCCccCHHHHHHHHHHHHhc
Confidence 999999999999999999998754
No 78
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.76 E-value=2.4e-17 Score=117.12 Aligned_cols=89 Identities=26% Similarity=0.294 Sum_probs=77.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
.+.+|+|||++++.+|+.+..|+..+..... +|+++|+||+| ...+.+..+++..+++.+++.++++||+++.|+
T Consensus 117 ~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~----~piilv~NK~D-~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 191 (208)
T 3clv_A 117 ATCAIVVFDISNSNTLDRAKTWVNQLKISSN----YIIILVANKID-KNKFQVDILEVQKYAQDNNLLFIQTSAKTGTNI 191 (208)
T ss_dssp CSEEEEEEETTCHHHHHHHHHHHHHHHHHSC----CEEEEEEECTT-CC-CCSCHHHHHHHHHHTTCEEEEECTTTCTTH
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHhhCC----CcEEEEEECCC-cccccCCHHHHHHHHHHcCCcEEEEecCCCCCH
Confidence 3559999999999999999999999986543 89999999999 444566778899999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy2600 109 WVNTRTPEINPLKY 122 (158)
Q Consensus 109 ~~lf~~l~~~~~~~ 122 (158)
+++|++|.+.+.+.
T Consensus 192 ~~l~~~l~~~~~~~ 205 (208)
T 3clv_A 192 KNIFYMLAEEIYKN 205 (208)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999988764
No 79
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=8.1e-18 Score=121.13 Aligned_cols=88 Identities=20% Similarity=0.277 Sum_probs=75.5
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+ ..|+..+...... +|+++|+||+|+... +.+..+++..+++..+. .+
T Consensus 100 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 176 (207)
T 2fv8_A 100 ILMCFSVDSPDSLENIPEKWVPEVKHFCPN---VPIILVANKKDLRSDEHVRTELARMKQEPVRTDDGRAMAVRIQAYDY 176 (207)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHSTT---CCEEEEEECGGGGGCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEEchhhhccccchhhhhhcccCCCCHHHHHHHHHhcCCCEE
Confidence 9999999999999998 6899888865433 899999999999654 34667788888888887 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+++||++|.||+++|+.|.+.+.+.
T Consensus 177 ~~~SA~~g~gi~el~~~l~~~i~~~ 201 (207)
T 2fv8_A 177 LECSAKTKEGVREVFETATRAALQK 201 (207)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHSC
T ss_pred EEeeCCCCCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999987653
No 80
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.75 E-value=4e-18 Score=122.66 Aligned_cols=85 Identities=16% Similarity=0.194 Sum_probs=73.2
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc------------ccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRV------------VTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~------------~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+. .|+..+...... +|+++|+||+|+..... +..+++..+++.++. ++
T Consensus 105 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 4gzl_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCSS---CCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHhCCC---CCEEEEEechhhccchhhhhhhhccccccccHHHHHHHHHhcCCcEE
Confidence 99999999999999997 899998876533 99999999999865432 667788889999885 59
Q ss_pred EEEeCCCCCCHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
+++||++|.||+++|+.+.+.+
T Consensus 182 ~~~SA~~g~gi~~l~~~l~~~~ 203 (204)
T 4gzl_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
T ss_dssp EECCTTTCTTHHHHHHHHHHTT
T ss_pred EEeeCCCCCCHHHHHHHHHHHh
Confidence 9999999999999999998764
No 81
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.75 E-value=1.2e-17 Score=118.81 Aligned_cols=90 Identities=22% Similarity=0.149 Sum_probs=75.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||++++.+|+.+..|+..+.........+|+++|+||+|+.. +.+..+++..+++.+++.++++||++|.||+++
T Consensus 83 ~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~gi~~l 161 (199)
T 2gf0_A 83 FILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ-REVDTREAQAVAQEWKCAFMETSAKMNYNVKEL 161 (199)
T ss_dssp EEEEEETTCHHHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS-CSSCHHHHHHHHHHHTCEEEECBTTTTBSHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc-cccCHHHHHHHHHHhCCeEEEEecCCCCCHHHH
Confidence 9999999999999999988887775432111189999999999975 455677888899999999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+++.+.+.+.
T Consensus 162 ~~~l~~~~~~~ 172 (199)
T 2gf0_A 162 FQELLTLETRR 172 (199)
T ss_dssp HHHHHHHCSSS
T ss_pred HHHHHHHHhhh
Confidence 99999877543
No 82
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.73 E-value=4.9e-18 Score=117.26 Aligned_cols=86 Identities=14% Similarity=0.088 Sum_probs=63.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHH-H----HHHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAK-L----AQSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+....|+..+... .... +|+++|+||+|+..... ..+... + ++..+++++++||++|
T Consensus 71 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 146 (164)
T 1r8s_A 71 LIFVVDSNDRERVNEAREELMRMLAEDELRD--AVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSG 146 (164)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhcC--CeEEEEEECcCCcCCCC--HHHHHHHhCcccccCccEEEEEcccCCC
Confidence 99999999999999999999888742 2222 89999999999965321 122211 1 1123456999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.||+++|+.+.+.+.+
T Consensus 147 ~gi~~l~~~l~~~i~~ 162 (164)
T 1r8s_A 147 DGLYEGLDWLSNQLRN 162 (164)
T ss_dssp BTHHHHHHHHHHHC--
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 83
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.72 E-value=2.5e-16 Score=112.60 Aligned_cols=90 Identities=20% Similarity=0.326 Sum_probs=78.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|||+++..+|+.+..|+..+....... .|+++|+||+|+...+.+...+++.++...++.++++||+++.|++++
T Consensus 81 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~~d~Sal~~~~i~~l 158 (199)
T 2f9l_A 81 ALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTDEARAFAEKNNLSFIETSALDSTNVEEA 158 (199)
T ss_dssp EEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECTTCGGGCCSCHHHHHHHHHHTTCEEEECCTTTCTTHHHH
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CeEEEEEECcccccccCcCHHHHHHHHHHcCCeEEEEeCCCCCCHHHH
Confidence 889999999999999999998887554333 899999999999766666777888999999999999999999999999
Q ss_pred HHHHHHHHHHhH
Q psy2600 112 TRTPEINPLKYL 123 (158)
Q Consensus 112 f~~l~~~~~~~~ 123 (158)
|+.+.+.+.+..
T Consensus 159 ~~~l~~~~~~~~ 170 (199)
T 2f9l_A 159 FKNILTEIYRIV 170 (199)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999887654
No 84
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.71 E-value=2.5e-17 Score=117.61 Aligned_cols=84 Identities=15% Similarity=0.125 Sum_probs=67.6
Q ss_pred EEEEEECCCh--hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC-------CccccHHHHHHHHH----HhCCeEE
Q psy2600 32 VIFMYDITSG--QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH-------QRVVTLERHAKLAQ----SLHLHSF 98 (158)
Q Consensus 32 ~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~-------~~~~~~~~~~~~~~----~~~~~~~ 98 (158)
+|+|||+++. +++..+..|+.++...... +|+++|+||+|+.. .+.+.......+++ .+++.|+
T Consensus 99 ~i~v~d~~~~~~~~~~~~~~~l~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~ 175 (196)
T 3llu_A 99 LIYVIDAQDDYMEALTRLHITVSKAYKVNPD---MNFEVFIHKVDGLSDDHKIETQRDIHQRANDDLADAGLEKLHLSFY 175 (196)
T ss_dssp EEEEEETTSCCHHHHHHHHHHHHHHHHHCTT---CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTTCTTSCEEEE
T ss_pred EEEEEECCCchHHHHHHHHHHHHHHHhcCCC---CcEEEEEeccccCchhhhhHHHhHHHHHHHHHHHHhhhhcCCcceE
Confidence 9999999997 6777777888887544333 99999999999754 33455556777777 6678899
Q ss_pred EEeCCCCCCHHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
+|||++ .||+++|..+++.+
T Consensus 176 e~Sa~~-~~v~~~f~~l~~~l 195 (196)
T 3llu_A 176 LTSIYD-HSIFEAFSKVVQKL 195 (196)
T ss_dssp EECTTS-THHHHHHHHHHHHT
T ss_pred EEEech-hhHHHHHHHHHHHh
Confidence 999999 99999999998865
No 85
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.71 E-value=4.5e-17 Score=116.73 Aligned_cols=84 Identities=14% Similarity=0.106 Sum_probs=67.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-----------------h
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-----------------L 93 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-----------------~ 93 (158)
+++|||++++.+|+.+..|+.++... .... +|+++|+||+|+.. .+..++...+... .
T Consensus 96 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (198)
T 1f6b_A 96 IVFLVDCADHERLLESKEELDSLMTDETIAN--VPILILGNKIDRPE--AISEERLREMFGLYGQTTGKGSVSLKELNAR 171 (198)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--SCEEEEEECTTSTT--CCCHHHHHHHHTCTTTCCCSSCCCTTTCCSC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCC--CcEEEEEECCCccc--cCCHHHHHHHhCcccccccccccccccccCc
Confidence 99999999999999999999988743 2222 89999999999975 3455666665542 2
Q ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHH
Q psy2600 94 HLHSFAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 94 ~~~~~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
+..+++|||++|.||+++|+++.+.+
T Consensus 172 ~~~~~~~SA~~g~gv~~l~~~l~~~l 197 (198)
T 1f6b_A 172 PLEVFMCSVLKRQGYGEGFRWMAQYI 197 (198)
T ss_dssp CEEEEECBTTTTBSHHHHHHHHHTTC
T ss_pred eEEEEEEECCCCCCHHHHHHHHHHhc
Confidence 35799999999999999999998653
No 86
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.71 E-value=1.3e-17 Score=118.92 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=64.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHH-HH----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAK-LA----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~~----~~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|+..+.... ... +|+++|+||+|+..... ..+... +. +..++.++++||++|
T Consensus 100 iilv~D~~~~~s~~~~~~~l~~~~~~~~~~~--~piilv~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~~SA~~g 175 (192)
T 2b6h_A 100 LIFVVDSNDRERVQESADELQKMLQEDELRD--AVLLVFANKQDMPNAMP--VSELTDKLGLQHLRSRTWYVQATCATQG 175 (192)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCSSCCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHhcccccCC--CeEEEEEECCCCCCCCC--HHHHHHHhCcccccCCceEEEECcCCCc
Confidence 999999999999999999998887422 222 99999999999965321 122211 11 122356999999999
Q ss_pred CCHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPL 120 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~ 120 (158)
.||+++|++|++.+.
T Consensus 176 ~gi~~l~~~l~~~i~ 190 (192)
T 2b6h_A 176 TGLYDGLDWLSHELS 190 (192)
T ss_dssp BTHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHh
Confidence 999999999998764
No 87
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.70 E-value=3.9e-17 Score=116.23 Aligned_cols=83 Identities=12% Similarity=0.076 Sum_probs=66.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH------------hCCeEE
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS------------LHLHSF 98 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~------------~~~~~~ 98 (158)
+++|||++++.+|+.+..|+..+... .... +|+++|+||+|+.. .+..++.....+. .++.++
T Consensus 94 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (190)
T 1m2o_B 94 IVFLVDAADPERFDEARVELDALFNIAELKD--VPFVILGNKIDAPN--AVSEAELRSALGLLNTTGSQRIEGQRPVEVF 169 (190)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTT--CCCHHHHHHHTTCSSCCC---CCSSCCEEEE
T ss_pred EEEEEECCChHHHHHHHHHHHHHHcchhhcC--CCEEEEEECCCCcC--CCCHHHHHHHhCCccccccccccccceEEEE
Confidence 99999999999999999999988743 2222 89999999999975 3445555554432 346799
Q ss_pred EEeCCCCCCHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~ 118 (158)
+|||++|.||+++|+++.+.
T Consensus 170 ~~Sa~~g~gi~~l~~~l~~~ 189 (190)
T 1m2o_B 170 MCSVVMRNGYLEAFQWLSQY 189 (190)
T ss_dssp ECBTTTTBSHHHHHHHHHTT
T ss_pred EeECCcCCCHHHHHHHHHhh
Confidence 99999999999999999864
No 88
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.70 E-value=2.8e-17 Score=114.07 Aligned_cols=86 Identities=17% Similarity=0.091 Sum_probs=65.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHH-H----HHHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAK-L----AQSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+....|+..+.... ... +|+++|+||+|+..... ..+... + ++..++.++++||++|
T Consensus 78 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 153 (171)
T 1upt_A 78 VIYVVDSCDRDRIGISKSELVAMLEEEELRK--AILVVFANKQDMEQAMT--SSEMANSLGLPALKDRKWQIFKTSATKG 153 (171)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCC--HHHHHHHHTGGGCTTSCEEEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhchhhCC--CEEEEEEECCCCcCCCC--HHHHHHHhCchhccCCceEEEECcCCCC
Confidence 999999999999999999888876432 122 99999999999975432 122211 1 2234567999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.|++++|+++.+.+.+
T Consensus 154 ~gi~~l~~~l~~~i~~ 169 (171)
T 1upt_A 154 TGLDEAMEWLVETLKS 169 (171)
T ss_dssp TTHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHhh
Confidence 9999999999988754
No 89
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.70 E-value=3.2e-16 Score=111.62 Aligned_cols=110 Identities=26% Similarity=0.421 Sum_probs=92.5
Q ss_pred ccCCCCcceEEEEEEECCCCCCeE--------------------------------------------------------
Q psy2600 8 NLHNDNYEIQLKVVLLGDPSCGKI-------------------------------------------------------- 31 (158)
Q Consensus 8 ~~~~~~~~~~~ki~~~G~~~vgk~-------------------------------------------------------- 31 (158)
......+++.+|++++|..|+|||
T Consensus 20 ~~~~~~~~~~~kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~ 99 (191)
T 1oix_A 20 GTRDDEYDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYY 99 (191)
T ss_dssp ----CCCSEEEEEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHH
T ss_pred CCcccccCcceEEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHh
Confidence 334456778999999999999998
Q ss_pred -----EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCC
Q psy2600 32 -----VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 32 -----~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
+++|||.++..+|+.+..|+..+....... .|+++|+||+|+...+.+....+..++...++.++++||+++.
T Consensus 100 ~~~~~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~--~~i~~v~nK~Dl~~~~~~~~~~a~~l~~~~~~~~ld~Sald~~ 177 (191)
T 1oix_A 100 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSN--IVIMLVGNKSDLRHLRAVPTDEARAFAEKNGLSFIETSALDST 177 (191)
T ss_dssp TTCCEEEEEEETTCHHHHHTHHHHHHHHHHHSCTT--CEEEEEEECGGGGGGCCSCHHHHHHHHHHTTCEEEECCTTTCT
T ss_pred hcCCEEEEEEECcCHHHHHHHHHHHHHHHHhcCCC--CcEEEEEECcccccccccCHHHHHHHHHHcCCEEEEEeCCCCC
Confidence 789999999999999989998877544333 8999999999997655666778899999999999999999999
Q ss_pred CHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINP 119 (158)
Q Consensus 107 ~i~~lf~~l~~~~ 119 (158)
|++++|+.+.+.+
T Consensus 178 ~v~~l~~~l~~~i 190 (191)
T 1oix_A 178 NVEAAFQTILTEI 190 (191)
T ss_dssp THHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh
Confidence 9999999998765
No 90
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.69 E-value=1.1e-16 Score=122.41 Aligned_cols=87 Identities=18% Similarity=0.204 Sum_probs=75.7
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCC------------ccccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQ------------RVVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~------------~~~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+. .|+..+...... +|+++|+||+|+... +.+..+++..+++..+. .+
T Consensus 230 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~---~p~ilv~nK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 306 (332)
T 2wkq_A 230 FLICFSLVSPASFHHVRAKWYPEVRHHCPN---TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 306 (332)
T ss_dssp EEEEEETTCHHHHHHHHHTHHHHHHHHCTT---SCEEEEEECHHHHTCHHHHHHHHHTTCCCCCHHHHHHHHHHTTCSEE
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhhCCC---CcEEEEEEchhcccccchhhhccccccccccHHHHHHHHHHcCCcEE
Confidence 99999999999999987 799888866442 999999999998543 45677888899999987 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
++|||++|.||+++|+.+.+.+.+
T Consensus 307 ~~~Sa~~~~gi~~l~~~l~~~~~~ 330 (332)
T 2wkq_A 307 LECSALTQRGLKTVFDEAIRAVLC 330 (332)
T ss_dssp EECCTTTCTTHHHHHHHHHHHHHC
T ss_pred EEecCCCCcCHHHHHHHHHHHHhc
Confidence 999999999999999999988754
No 91
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.69 E-value=1.7e-16 Score=112.16 Aligned_cols=87 Identities=16% Similarity=0.064 Sum_probs=67.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-----HhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-----SLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|+..+.... ... +|+++|+||+|+.... ..++...... ..++.++++||++|
T Consensus 87 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 162 (187)
T 1zj6_A 87 VIVVVDSTDRERISVTREELYKMLAHEDLRK--AGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTG 162 (187)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTSGGGTT--CEEEEEEECTTSTTCC--CHHHHHHHHTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhchhhCC--CeEEEEEECCCCcCCC--CHHHHHHHhChhhhcCCCcEEEEccCCCC
Confidence 999999999999999999999887532 122 9999999999996532 2333333322 23568999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2600 106 DNCWVNTRTPEINPLKY 122 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~ 122 (158)
.||+++|++|++.+...
T Consensus 163 ~gi~~l~~~l~~~~~~~ 179 (187)
T 1zj6_A 163 EGLCQGLEWMMSRLKIR 179 (187)
T ss_dssp BTHHHHHHHHHHHHCC-
T ss_pred cCHHHHHHHHHHHHHHH
Confidence 99999999999987554
No 92
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.68 E-value=3.5e-17 Score=116.07 Aligned_cols=86 Identities=12% Similarity=0.123 Sum_probs=64.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHH-H----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKL-A----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~-~----~~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|+..+... .... +|+++|+||+|+.... ...+.... . ...++.++++||++|
T Consensus 94 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~--~~~~~~~~~~~~~~~~~~~~~~~~SA~~g 169 (188)
T 1zd9_A 94 IVYMVDAADQEKIEASKNELHNLLDKPQLQG--IPVLVLGNKRDLPGAL--DEKELIEKMNLSAIQDREICCYSISCKEK 169 (188)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CCEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhCcccCC--CCEEEEEECCCCccCC--CHHHHHHHhChhhhccCCeeEEEEECCCC
Confidence 99999999999999999999888643 1122 8999999999996532 12222111 1 123457899999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.||+++|++|.+.+.+
T Consensus 170 ~gv~~l~~~l~~~~~~ 185 (188)
T 1zd9_A 170 DNIDITLQWLIQHSKS 185 (188)
T ss_dssp TTHHHHHHHHHHTCC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987754
No 93
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.68 E-value=3.9e-17 Score=115.59 Aligned_cols=87 Identities=16% Similarity=0.068 Sum_probs=66.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHH-H----HHHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAK-L----AQSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~-~----~~~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+....|+..+.... ... +|+++|+||+|+..... ..+... + +...++.++++||+++
T Consensus 93 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 168 (189)
T 2x77_A 93 VIYVVDSTDRDRMGVAKHELYALLDEDELRK--SLLLIFANKQDLPDAAS--EAEIAEQLGVSSIMNRTWTIVKSSSKTG 168 (189)
T ss_dssp EEEEEETTCCTTHHHHHHHHHHHHTCSTTTT--CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHhhhhcCC--CeEEEEEECCCCcCCCC--HHHHHHHhChhhccCCceEEEEccCCCc
Confidence 999999999999999999988876432 122 99999999999975422 122221 1 1223457999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2600 106 DNCWVNTRTPEINPLKY 122 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~ 122 (158)
.||+++|+.+.+.+.+.
T Consensus 169 ~gi~~l~~~l~~~i~~~ 185 (189)
T 2x77_A 169 DGLVEGMDWLVERLREQ 185 (189)
T ss_dssp TTHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988653
No 94
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.68 E-value=7.7e-17 Score=113.81 Aligned_cols=86 Identities=17% Similarity=0.068 Sum_probs=64.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHH-----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLA-----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|+..+... .... +|+++|+||+|+..... .++..... ...++.+++|||++|
T Consensus 87 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~g 162 (181)
T 1fzq_A 87 LIYVIDSADRKRFEETGQELTELLEEEKLSC--VPVLIFANKQDLLTAAP--ASEIAEGLNLHTIRDRVWQIQSCSALTG 162 (181)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHTTCGGGTT--CCEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhhcC--CCEEEEEECcCcccCCC--HHHHHHHhCchhccCCceEEEEccCCCC
Confidence 99999999999999999999887632 2222 89999999999975432 22222211 122457999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.||+++|+++.+.+.+
T Consensus 163 ~gi~~l~~~l~~~~~~ 178 (181)
T 1fzq_A 163 EGVQDGMNWVCKNVNA 178 (181)
T ss_dssp TTHHHHHHHHHHTC--
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999987754
No 95
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.68 E-value=5.4e-17 Score=114.80 Aligned_cols=90 Identities=16% Similarity=0.197 Sum_probs=69.9
Q ss_pred eEEEEEEECCCh-hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc---HHHHHHHHHHhCCe----EEEEe
Q psy2600 30 KIVIFMYDITSG-QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT---LERHAKLAQSLHLH----SFAVS 101 (158)
Q Consensus 30 k~~i~v~d~~~~-~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~---~~~~~~~~~~~~~~----~~~~S 101 (158)
+.+++|||++++ .+|+.+..|+.++...... +|+++|+||+|+...+.+. ......+++.+++. |+++|
T Consensus 81 ~~~i~v~d~~~~~~s~~~~~~~~~~~~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~S 157 (184)
T 2zej_A 81 ALYLAVYDLSKGQAEVDAMKPWLFNIKARASS---SPVILVGTHLDVSDEKQRKACMSKITKELLNKRGFPAIRDYHFVN 157 (184)
T ss_dssp EEEEEEEEGGGCHHHHHTHHHHHHHHHHHCTT---CEEEEEEECGGGCCHHHHHHHHHHHHHHTTTCTTSCEEEEEEECC
T ss_pred cEEEEEEeCCcchhHHHHHHHHHHHHHhhCCC---CcEEEEEECCCcccchhhHHHHHHHHHHHHHhcCCcchhheEEEe
Confidence 348899999997 5899999999998865432 8999999999997543332 23345555566776 99999
Q ss_pred CCCCC-CHHHHHHHHHHHHHHh
Q psy2600 102 ARTGD-NCWVNTRTPEINPLKY 122 (158)
Q Consensus 102 a~~~~-~i~~lf~~l~~~~~~~ 122 (158)
|+++. +++++++.+.+.+...
T Consensus 158 a~~~~~~~~~l~~~i~~~~~~~ 179 (184)
T 2zej_A 158 ATEESDALAKLRKTIINESLNF 179 (184)
T ss_dssp TTSCCHHHHHHHHHHHHHHHCC
T ss_pred cccCchhHHHHHHHHHHHHhcc
Confidence 99996 9999999998887653
No 96
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.68 E-value=2.9e-16 Score=111.28 Aligned_cols=86 Identities=17% Similarity=0.107 Sum_probs=67.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcC---CCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-----HhCCeEEEEeCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRK---SSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-----SLHLHSFAVSAR 103 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~---~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~ 103 (158)
+++|||++++.+|+.+..|+..+..... .. +|+++|+||+|+... ...++...... ..++.++++||+
T Consensus 94 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~--~~~~~~~~~~~~~~~~~~~~~~~~~Sa~ 169 (190)
T 2h57_A 94 IIFVIDSSDRLRMVVAKEELDTLLNHPDIKHRR--IPILFFANKMDLRDA--VTSVKVSQLLCLENIKDKPWHICASDAI 169 (190)
T ss_dssp EEEEEETTCHHHHHHHHHHHHHHHHSTTTTTSC--CCEEEEEECTTSTTC--CCHHHHHHHHTGGGCCSSCEEEEECBTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhccCC--CeEEEEEeCcCcccC--CCHHHHHHHhChhhccCCceEEEEccCC
Confidence 9999999999999999999988875422 22 899999999999653 23445555443 235679999999
Q ss_pred CCCCHHHHHHHHHHHHHH
Q psy2600 104 TGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 104 ~~~~i~~lf~~l~~~~~~ 121 (158)
+|.||+++|+.|.+.+.+
T Consensus 170 ~~~gi~~l~~~l~~~i~~ 187 (190)
T 2h57_A 170 KGEGLQEGVDWLQDQIQT 187 (190)
T ss_dssp TTBTHHHHHHHHHHHC--
T ss_pred CCcCHHHHHHHHHHHHHH
Confidence 999999999999987754
No 97
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.50 E-value=3.3e-18 Score=122.73 Aligned_cols=85 Identities=16% Similarity=0.198 Sum_probs=71.1
Q ss_pred EEEEEECCChhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc------------cccHHHHHHHHHHhCC-eE
Q psy2600 32 VIFMYDITSGQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQR------------VVTLERHAKLAQSLHL-HS 97 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~------------~~~~~~~~~~~~~~~~-~~ 97 (158)
+++|||++++.+|+.+. .|+..+...... +|+++|+||+|+.... .+..+++..+++.++. .+
T Consensus 105 iilv~D~~~~~s~~~~~~~~~~~l~~~~~~---~piilv~NK~Dl~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 181 (204)
T 3th5_A 105 FLICFSLVSPASFENVRAKWYPEVRHHCPN---TPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKY 181 (204)
Confidence 89999999999999987 898888765432 8999999999996432 4455667778888887 89
Q ss_pred EEEeCCCCCCHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
+++||++|.||+++|+.+.+.+
T Consensus 182 ~~vSA~~g~gi~~l~~~l~~~i 203 (204)
T 3th5_A 182 LECSALTQRGLKTVFDEAIRAV 203 (204)
Confidence 9999999999999999998764
No 98
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.67 E-value=3.7e-17 Score=115.18 Aligned_cols=83 Identities=17% Similarity=0.101 Sum_probs=63.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHH-----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLA-----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|+..+.... ... +|+++|+||+|+.... ..++..... ...++.++++||++|
T Consensus 92 ii~v~D~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~NK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~g 167 (181)
T 2h17_A 92 VIVVVDSTDRERISVTREELYKMLAHEDLRK--AGLLIFANKQDVKECM--TVAEISQFLKLTSIKDHQWHIQACCALTG 167 (181)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCC--CHHHHHHHTTGGGCCSSCEEEEECBTTTT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHhChhhCC--CeEEEEEECCCcccCC--CHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 999999999999999999998887431 122 9999999999996532 233333322 123457999999999
Q ss_pred CCHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEIN 118 (158)
Q Consensus 106 ~~i~~lf~~l~~~ 118 (158)
.||+++|++|.+.
T Consensus 168 ~gi~~l~~~l~~~ 180 (181)
T 2h17_A 168 EGLCQGLEWMMSR 180 (181)
T ss_dssp BTHHHHHHHHHTC
T ss_pred cCHHHHHHHHHhh
Confidence 9999999999864
No 99
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.67 E-value=5.8e-16 Score=109.17 Aligned_cols=87 Identities=16% Similarity=0.109 Sum_probs=67.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-----HhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-----SLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|+..+... .... +|+++|+||+|+..... .++...... ..++.++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (186)
T 1ksh_A 89 LIWVVDSADRQRMQDCQRELQSLLVEERLAG--ATLLIFANKQDLPGALS--CNAIQEALELDSIRSHHWRIQGCSAVTG 164 (186)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCC--HHHHHHHTTGGGCCSSCEEEEECCTTTC
T ss_pred EEEEEECcCHHHHHHHHHHHHHHHhChhcCC--CcEEEEEeCccCCCCCC--HHHHHHHhChhhccCCceEEEEeeCCCC
Confidence 99999999999999999999888743 2122 99999999999975432 223222211 23567999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2600 106 DNCWVNTRTPEINPLKY 122 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~ 122 (158)
.|++++|+.+.+.+.+.
T Consensus 165 ~gi~~l~~~l~~~i~~~ 181 (186)
T 1ksh_A 165 EDLLPGIDWLLDDISSR 181 (186)
T ss_dssp TTHHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhc
Confidence 99999999999988653
No 100
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.66 E-value=9.2e-17 Score=112.81 Aligned_cols=87 Identities=17% Similarity=0.048 Sum_probs=66.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH-----HhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ-----SLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~-----~~~~~~~~~Sa~~~ 105 (158)
+++|||++++.+|+.+..|+..+.... ... +|+++|+||+|+.... ...+...... ..++.++++||++|
T Consensus 89 ii~v~d~~~~~s~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~--~~~~i~~~~~~~~~~~~~~~~~~~Sa~~~ 164 (183)
T 1moz_A 89 VIFVVDSTDKDRMSTASKELHLMLQEEELQD--AALLVFANKQDQPGAL--SASEVSKELNLVELKDRSWSIVASSAIKG 164 (183)
T ss_dssp EEEEEETTCTTTHHHHHHHHHHHTTSSTTSS--CEEEEEEECTTSTTCC--CHHHHHHHTTTTTCCSSCEEEEEEBGGGT
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHcChhhCC--CeEEEEEECCCCCCCC--CHHHHHHHhCcccccCCceEEEEccCCCC
Confidence 899999999999999999999887542 222 9999999999996532 2233333221 12347999999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2600 106 DNCWVNTRTPEINPLKY 122 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~ 122 (158)
.||+++|+++.+.+.+.
T Consensus 165 ~gi~~l~~~l~~~~~~~ 181 (183)
T 1moz_A 165 EGITEGLDWLIDVIKEE 181 (183)
T ss_dssp BTHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHhc
Confidence 99999999999988653
No 101
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.65 E-value=1e-15 Score=111.80 Aligned_cols=89 Identities=11% Similarity=0.014 Sum_probs=67.5
Q ss_pred EEEEEECCChhHHhh--HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHH---HHHHHHHHhC--CeEEEEeCCC
Q psy2600 32 VIFMYDITSGQSFHS--IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLE---RHAKLAQSLH--LHSFAVSART 104 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~---~~~~~~~~~~--~~~~~~Sa~~ 104 (158)
+|+|||++++.+|+. ...|+..+...... +|+++|+||+|+...+.+... ....+++..+ +.++++||++
T Consensus 112 ~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~---~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~ 188 (228)
T 2qu8_A 112 ILFIIDISEQCGLTIKEQINLFYSIKSVFSN---KSIVIGFNKIDKCNMDSLSIDNKLLIKQILDNVKNPIKFSSFSTLT 188 (228)
T ss_dssp EEEEEETTCTTSSCHHHHHHHHHHHHTCC-C---CCEEEEEECGGGCC--CCCHHHHHHHHHHHHHCCSCEEEEECCTTT
T ss_pred EEEEEecccccCcchHHHHHHHHHHHHhhcC---CcEEEEEeCcccCCchhhHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 899999999888763 23566666643222 899999999999765555543 4556666666 7899999999
Q ss_pred CCCHHHHHHHHHHHHHHhH
Q psy2600 105 GDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~~ 123 (158)
|.||+++|+.|.+.+.+..
T Consensus 189 g~gi~~l~~~l~~~i~~~~ 207 (228)
T 2qu8_A 189 GVGVEQAKITACELLKNDQ 207 (228)
T ss_dssp CTTHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHH
Confidence 9999999999999887653
No 102
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.62 E-value=3.9e-16 Score=126.10 Aligned_cols=90 Identities=14% Similarity=0.108 Sum_probs=64.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeCCCCCCCccccHHHHHHHH-----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLA-----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 105 (158)
+|+|||++++.+|+.+..|+..+.... ..+ +|+++|+||+|+..... ..+..... ...++.+++|||++|
T Consensus 393 ~i~V~D~~~~~s~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~SA~~g 468 (497)
T 3lvq_E 393 LIFVVDCADRDRIDEARQELHRIINDREMRD--AIILIFANKQDLPDAMK--PHEIQEKLGLTRIRDRNWYVQPSCATSG 468 (497)
T ss_dssp EEEEEETTCGGGHHHHHHHHHHHHTSGGGTT--CEEEEEEECCSSSSCCC--HHHHHHHTTCTTCCSSCEEEEECBTTTT
T ss_pred EEEEEECcchhHHHHHHHHHHHHhhhhhcCC--CcEEEEEECCCCCcCCC--HHHHHHHhchhhhhcCCeEEEEEECCCC
Confidence 999999999999999999998886432 122 99999999999965322 22222111 112345999999999
Q ss_pred CCHHHHHHHHHHHHHHhHhh
Q psy2600 106 DNCWVNTRTPEINPLKYLQS 125 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~~~~ 125 (158)
.||+++|++|.+.+.+....
T Consensus 469 ~gi~~l~~~l~~~~~~~~~~ 488 (497)
T 3lvq_E 469 DGLYEGLTWLTSNYKSKLAA 488 (497)
T ss_dssp BTHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHHHHHHhcCCC
Confidence 99999999999988765443
No 103
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.62 E-value=4.9e-16 Score=119.83 Aligned_cols=86 Identities=13% Similarity=0.069 Sum_probs=64.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhh-hcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHH-----HHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHL-NRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA-----QSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~-~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~-----~~~~~~~~~~Sa~~~ 105 (158)
+|+|||++++.+|+.+..|+..+.. ..... +|+++|+||+|+..... ..+..... ...++.++++||++|
T Consensus 236 vilV~D~~~~~s~~~~~~~~~~~~~~~~~~~--~piilV~NK~Dl~~~~~--~~~i~~~~~~~~~~~~~~~~~~vSAk~g 311 (329)
T 3o47_A 236 LIFVVDSNDRERVNEAREELMRMLAEDELRD--AVLLVFANKQDLPNAMN--AAEITDKLGLHSLRHRNWYIQATCATSG 311 (329)
T ss_dssp EEEEEETTCSSSHHHHHHHHHHHHTCGGGTT--CEEEEEEECTTSTTCCC--HHHHHHHHTCTTCCSSCEEEEECBTTTT
T ss_pred EEEEEECCchHHHHHHHHHHHHHHhhhccCC--CeEEEEEECccCCcccC--HHHHHHHhchhhhhcCCCEEEEEECCCC
Confidence 9999999999999999888877763 22222 99999999999975432 22222111 112356999999999
Q ss_pred CCHHHHHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~ 121 (158)
.||+++|+.|++.+.+
T Consensus 312 ~gi~el~~~l~~~l~~ 327 (329)
T 3o47_A 312 DGLYEGLDWLSNQLRN 327 (329)
T ss_dssp BTHHHHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHh
Confidence 9999999999988754
No 104
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.60 E-value=8.7e-16 Score=106.74 Aligned_cols=81 Identities=16% Similarity=0.053 Sum_probs=63.5
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+.+++|+|+++.+ ....|+..+.+.. +|+++|+||+|+...+.+.. +...+++.++++++++||++|.||+
T Consensus 83 ~~~i~v~D~~~~~---~~~~~~~~~~~~~-----~p~ilv~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~SA~~~~~v~ 153 (165)
T 2wji_A 83 DLVVNIVDATALE---RNLYLTLQLMEMG-----ANLLLALNKMDLAKSLGIEI-DVDKLEKILGVKVVPLSAAKKMGIE 153 (165)
T ss_dssp SEEEEEEETTCHH---HHHHHHHHHHHTT-----CCEEEEEECHHHHHHTTCCC-CHHHHHHHHTSCEEECBGGGTBSHH
T ss_pred CEEEEEecCCchh---HhHHHHHHHHhcC-----CCEEEEEEchHhccccChhh-HHHHHHHHhCCCEEEEEcCCCCCHH
Confidence 4589999988754 3455777776533 89999999999864333332 4677888889999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 110 VNTRTPEINP 119 (158)
Q Consensus 110 ~lf~~l~~~~ 119 (158)
++|+.+.+.+
T Consensus 154 ~l~~~l~~~~ 163 (165)
T 2wji_A 154 ELKKAISIAV 163 (165)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHh
Confidence 9999998765
No 105
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.59 E-value=3.4e-15 Score=114.05 Aligned_cols=86 Identities=12% Similarity=0.230 Sum_probs=68.7
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHh---hhcCCCCCcEEEEEEeCCCCCC--Ccc----ccHHHHHHHHHHhC---CeE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFH---LNRKSSTPTYVALVANKGDMEH--QRV----VTLERHAKLAQSLH---LHS 97 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~piilv~nK~Dl~~--~~~----~~~~~~~~~~~~~~---~~~ 97 (158)
+++|+|||++++.+|+++..|...+. ...+. +|+++|+||+|+.. .+. +..+++..+++.+| +++
T Consensus 82 d~vi~V~D~t~~~s~~~l~~~~~~l~~l~~~~~~---~piilv~NK~Dl~~~~~r~~~~~v~~~~~~~~~~~~g~~~~~~ 158 (307)
T 3r7w_A 82 QVLIHVFDVESTEVLKDIEIFAKALKQLRKYSPD---AKIFVLLHKMDLVQLDKREELFQIMMKNLSETSSEFGFPNLIG 158 (307)
T ss_dssp SEEEEEEETTCSCHHHHHHHHHHHHHHHHHHCTT---CEEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHTTTCCSCEE
T ss_pred CEEEEEEECCChhhHHHHHHHHHHHHHHHHhCCC---CeEEEEEecccccchhhhhHHHHHHHHHHHHHHHHcCCCCeEE
Confidence 34999999999999999877755554 33322 99999999999975 343 45577888888887 789
Q ss_pred EEEeCCCCCCHHHHHHHHHHHH
Q psy2600 98 FAVSARTGDNCWVNTRTPEINP 119 (158)
Q Consensus 98 ~~~Sa~~~~~i~~lf~~l~~~~ 119 (158)
++|||++ .++.++|..+++.+
T Consensus 159 ~~tSa~~-~~i~e~~~~iv~~l 179 (307)
T 3r7w_A 159 FPTSIWD-ESLYKAWSQIVCSL 179 (307)
T ss_dssp EECCTTS-SHHHHHHHHHHHTT
T ss_pred EEeeecC-ChHHHHHHHHHHHH
Confidence 9999999 89999999888754
No 106
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=108.57 Aligned_cols=88 Identities=19% Similarity=0.137 Sum_probs=71.6
Q ss_pred CeEEEEEEECCCh--hHHhhHHHHHHHHhhh-cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH-hCCeEEEEeCCC
Q psy2600 29 GKIVIFMYDITSG--QSFHSIPTWVDLFHLN-RKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS-LHLHSFAVSART 104 (158)
Q Consensus 29 gk~~i~v~d~~~~--~s~~~~~~~~~~~~~~-~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~-~~~~~~~~Sa~~ 104 (158)
++++|+|||++++ .+|+.+..|+.++... .... +|+++|+||+|+...+.+ +++..+++. .++.++++||++
T Consensus 163 ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~--~piilV~NK~Dl~~~~~v--~~~~~~~~~~~~~~~~e~SAk~ 238 (255)
T 3c5h_A 163 VDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTK--KPIVVVLTKCDEGVERYI--RDAHTFALSKKNLQVVETSARS 238 (255)
T ss_dssp CCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTT--CCEEEEEECGGGBCHHHH--HHHHHHHHTSSSCCEEECBTTT
T ss_pred CCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCC--CCEEEEEEcccccccHHH--HHHHHHHHhcCCCeEEEEECCC
Confidence 5999999999998 9999999999998754 2222 899999999999654444 466777776 478999999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEINPL 120 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~ 120 (158)
|.||+++|+.|++.+.
T Consensus 239 g~gv~elf~~l~~~l~ 254 (255)
T 3c5h_A 239 NVNVDLAFSTLVQLID 254 (255)
T ss_dssp TBSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHhc
Confidence 9999999999998763
No 107
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.55 E-value=2.4e-15 Score=115.55 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=75.0
Q ss_pred ceEEEEEEECCCC--------------CCeEEEEEEECCCh--hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC
Q psy2600 15 EIQLKVVLLGDPS--------------CGKIVIFMYDITSG--QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ 78 (158)
Q Consensus 15 ~~~~ki~~~G~~~--------------vgk~~i~v~d~~~~--~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 78 (158)
.+.+.+|..|... -++++|+|||++++ +++..+..|+.++....+. +|++++|||+|+...
T Consensus 45 ~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~Ditd~~~~~~~~l~~~l~~~~~~~~~---ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 45 LIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVIDSQDEYINAITNLAMIIEYAYKVNPS---INIEVLIHKVDGLSE 121 (331)
T ss_dssp SSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEECCCSSCTTHHHHHHHHHHHHHHHHCTT---CEEEEECCCCCSSCS
T ss_pred EEEEEEEECCCchhccchhhhhhhhccCCCEEEEEEECCchHHHHHHHHHHHHHHHhhcCCC---CcEEEEEECcccCch
Confidence 3667777776532 24679999999997 3333334445555544333 999999999999753
Q ss_pred -------ccccHHHHHHHHHH----hCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 79 -------RVVTLERHAKLAQS----LHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 79 -------~~~~~~~~~~~~~~----~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+.+..++++.+++. +++.||+|||++ .||.++|..+++.+...
T Consensus 122 ~~R~~~~R~V~~~~~~~la~~~~~~~~i~f~eTSAkd-~nV~eAFs~iv~~li~~ 175 (331)
T 3r7w_B 122 DFKVDAQRDIMQRTGEELLELGLDGVQVSFYLTSIFD-HSIYEAFSRIVQKLIPE 175 (331)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSSCSCCCEEEECCCSSS-SHHHHHHHHHHTTSSTT
T ss_pred hhhhhHHHHhhHHHHHHHHhhcccccCceEEEeccCC-CcHHHHHHHHHHHHHhh
Confidence 34666667777775 578899999997 59999999999876543
No 108
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.54 E-value=1.4e-14 Score=102.08 Aligned_cols=86 Identities=19% Similarity=0.114 Sum_probs=64.3
Q ss_pred EEEEEECCChhHHhhH-HHHHHH--------H-hhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe-----
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDL--------F-HLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH----- 96 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~--------~-~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~----- 96 (158)
+++||+++|..+|..+ ..|... + ....... +|+++|+||+|+.... .+....+++.++..
T Consensus 83 ~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~ 157 (190)
T 2cxx_A 83 IDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELD--IPTIVAVNKLDKIKNV---QEVINFLAEKFEVPLSEID 157 (190)
T ss_dssp CCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTT--CCEEEEEECGGGCSCH---HHHHHHHHHHHTCCGGGHH
T ss_pred CCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcC--CceEEEeehHhccCcH---HHHHHHHHHHhhhhhhccC
Confidence 4577777777788776 567642 2 1111122 8999999999997543 45677888888864
Q ss_pred --EEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 97 --SFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 97 --~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
++++||++|.||+++|+.+.+.+.+.
T Consensus 158 ~~~~~~Sa~~~~~v~~l~~~l~~~~~~~ 185 (190)
T 2cxx_A 158 KVFIPISAKFGDNIERLKNRIFEVIRER 185 (190)
T ss_dssp HHEEECCTTTCTTHHHHHHHHHHHHHHC
T ss_pred CcEEEEecCCCCCHHHHHHHHHHhcchh
Confidence 79999999999999999999988664
No 109
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.53 E-value=8.5e-15 Score=103.20 Aligned_cols=82 Identities=16% Similarity=0.023 Sum_probs=63.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|.+ +++....|+..+.... +|+++|+||+|+...+.+. .....+++.+++.++++||+++.||+++
T Consensus 89 ~i~v~d~~---~~~~~~~~~~~~~~~~-----~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~Sa~~~~~v~~l 159 (188)
T 2wjg_A 89 VVNIVDAT---ALERNLYLTLQLMEMG-----ANLLLALNKMDLAKSLGIE-IDVDKLEKILGVKVVPLSAAKKMGIEEL 159 (188)
T ss_dssp EEEEEEGG---GHHHHHHHHHHHHTTT-----CCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBGGGTBSHHHH
T ss_pred EEEEecch---hHHHHHHHHHHHHhcC-----CCEEEEEEhhhccccccch-HHHHHHHHHhCCCeEEEEecCCCCHHHH
Confidence 56666654 3555667887776533 8999999999986433333 3567788888999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+.+.+.+.+.
T Consensus 160 ~~~i~~~~~~~ 170 (188)
T 2wjg_A 160 KKAISIAVKDK 170 (188)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHHhc
Confidence 99999988654
No 110
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.52 E-value=2e-15 Score=105.83 Aligned_cols=82 Identities=20% Similarity=0.137 Sum_probs=61.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+.+++|||+++..+++ ...|+..+.+..... +|+++|+||+|+..... .+++..+..++++||++|.||+
T Consensus 85 d~~i~v~D~~~~~s~~-~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~~~-------~~~~~~~~~~~~~SA~~g~gv~ 154 (172)
T 2gj8_A 85 DRVLFMVDGTTTDAVD-PAEIWPEFIARLPAK--LPITVVRNKADITGETL-------GMSEVNGHALIRLSARTGEGVD 154 (172)
T ss_dssp SEEEEEEETTTCCCCS-HHHHCHHHHHHSCTT--CCEEEEEECHHHHCCCC-------EEEEETTEEEEECCTTTCTTHH
T ss_pred CEEEEEEECCCCCCHH-HHHHHHHHHHhcccC--CCEEEEEECccCCcchh-------hhhhccCCceEEEeCCCCCCHH
Confidence 4599999999988876 457888877654433 89999999999853211 1112246689999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++|+.+.+.+..
T Consensus 155 ~l~~~l~~~~~~ 166 (172)
T 2gj8_A 155 VLRNHLKQSMGF 166 (172)
T ss_dssp HHHHHHHHHC--
T ss_pred HHHHHHHHHhhh
Confidence 999999887643
No 111
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.51 E-value=1.4e-13 Score=99.03 Aligned_cols=84 Identities=17% Similarity=0.188 Sum_probs=53.9
Q ss_pred EEEEEECCChh-HHhhHHHHHH-HHhhh--cCCCCCcEEEEEEeCCCCCCCccccHHHHHHHH---H-------------
Q psy2600 32 VIFMYDITSGQ-SFHSIPTWVD-LFHLN--RKSSTPTYVALVANKGDMEHQRVVTLERHAKLA---Q------------- 91 (158)
Q Consensus 32 ~i~v~d~~~~~-s~~~~~~~~~-~~~~~--~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~---~------------- 91 (158)
+|+|||+++.. ++.....|+. .+... .... +|+++|+||+|+....... .....+. .
T Consensus 82 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~piilv~nK~Dl~~~~~~~-~~~~~l~~~l~~~~~~~~~~~s~~ 158 (214)
T 2fh5_B 82 VVFVVDSAAFQREVKDVAEFLYQVLIDSMALKNS--PSLLIACNKQDIAMAKSAK-LIQQQLEKELNTLRVTRSAAPSTL 158 (214)
T ss_dssp EEEEEETTTHHHHHHHHHHHHHHHHHHHHTSTTC--CEEEEEEECTTSTTCCCHH-HHHHHHHHHHHHHHHHCC------
T ss_pred EEEEEECCCcCHHHHHHHHHHHHHHhhhhhcccC--CCEEEEEECCCCCCcccHH-HHHHHHHHHHHHHhccchhccccc
Confidence 99999999854 4666655444 44332 1222 8999999999997543211 1111111 1
Q ss_pred --------------------Hh--CCeEEEEeCCCC------CCHHHHHHHHHHH
Q psy2600 92 --------------------SL--HLHSFAVSARTG------DNCWVNTRTPEIN 118 (158)
Q Consensus 92 --------------------~~--~~~~~~~Sa~~~------~~i~~lf~~l~~~ 118 (158)
.+ ++.|++|||++| .||+++|++|.+.
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~SAk~g~~~~~~~gv~~lf~~l~~~ 213 (214)
T 2fh5_B 159 DSSSTAPAQLGKKGKEFEFSQLPLKVEFLECSAKGGRGDTGSADIQDLEKWLAKI 213 (214)
T ss_dssp ------CCCSSCTTSCCCGGGSSSCEEEEECBCC-------CCBCHHHHHHHHHH
T ss_pred cCCccccccccCCCCCcccccCCCcEEEEEeeccCCCccccccChHHHHHHHHHh
Confidence 11 567999999999 9999999999875
No 112
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.51 E-value=2.9e-14 Score=116.29 Aligned_cols=85 Identities=13% Similarity=0.118 Sum_probs=68.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|||+++ ++....|+..+..+... .|+++|+||+|+...+.+..+....++...+.+++++||++|.||+++
T Consensus 125 ii~V~D~s~---~~~~~~~~~~l~~~~~~---~pvilV~NK~Dl~~~~~v~~~~~~~~~~~~~~~~~~vSA~~g~gi~eL 198 (535)
T 3dpu_A 125 YMLLLDSRT---DSNKHYWLRHIEKYGGK---SPVIVVMNKIDENPSYNIEQKKINERFPAIENRFHRISCKNGDGVESI 198 (535)
T ss_dssp EEEEECGGG---GGGHHHHHHHHHHHSSS---CCEEEEECCTTTCTTCCCCHHHHHHHCGGGTTCEEECCC-----CTTH
T ss_pred EEEEEeCCC---chhHHHHHHHHHHhCCC---CCEEEEEECCCcccccccCHHHHHHHHHhcCCceEEEecCcccCHHHH
Confidence 889998864 46778899999877653 899999999999877777777888888888899999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+.+.+.+.+.
T Consensus 199 ~~~l~~~~~~~ 209 (535)
T 3dpu_A 199 AKSLKSAVLHP 209 (535)
T ss_dssp HHHHHHHHTCT
T ss_pred HHHHHHHHhcc
Confidence 99999987653
No 113
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.50 E-value=3.5e-14 Score=106.04 Aligned_cols=80 Identities=14% Similarity=-0.024 Sum_probs=63.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|+++.++. ..|...+.... +|+++|+||+|+...+.+. .+...+++.+|++++++||++|.|++++
T Consensus 87 ii~V~D~t~~~~~---~~~~~~l~~~~-----~pvilv~NK~Dl~~~~~i~-~~~~~l~~~lg~~vi~~SA~~g~gi~el 157 (258)
T 3a1s_A 87 VILVADSVNPEQS---LYLLLEILEME-----KKVILAMTAIDEAKKTGMK-IDRYELQKHLGIPVVFTSSVTGEGLEEL 157 (258)
T ss_dssp EEEEEETTSCHHH---HHHHHHHHTTT-----CCEEEEEECHHHHHHTTCC-BCHHHHHHHHCSCEEECCTTTCTTHHHH
T ss_pred EEEEeCCCchhhH---HHHHHHHHhcC-----CCEEEEEECcCCCCccchH-HHHHHHHHHcCCCEEEEEeeCCcCHHHH
Confidence 8899999875543 34666666543 9999999999986433333 2467788889999999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|+.+.+.+.
T Consensus 158 ~~~i~~~~~ 166 (258)
T 3a1s_A 158 KEKIVEYAQ 166 (258)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 999998764
No 114
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.50 E-value=5.8e-14 Score=99.11 Aligned_cols=82 Identities=16% Similarity=0.091 Sum_probs=56.0
Q ss_pred EEEEEECCChhH--HhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc--cccHHHHHHHHHHhC-CeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQS--FHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR--VVTLERHAKLAQSLH-LHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s--~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~-~~~~~~Sa~~~~ 106 (158)
+++|+|.++..+ +..+..|+... . +|+++|+||+|+.... ....++...++...+ +.++++||++|.
T Consensus 108 vi~v~d~~~~~~~~~~~~~~~~~~~---~-----~p~i~v~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 179 (195)
T 3pqc_A 108 VFLLVDGRIPPQDSDLMMVEWMKSL---N-----IPFTIVLTKMDKVKMSERAKKLEEHRKVFSKYGEYTIIPTSSVTGE 179 (195)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHHHT---T-----CCEEEEEECGGGSCGGGHHHHHHHHHHHHHSSCCSCEEECCTTTCT
T ss_pred EEEEecCCCCCCHHHHHHHHHHHHc---C-----CCEEEEEEChhcCChHHHHHHHHHHHHHHhhcCCCceEEEecCCCC
Confidence 677888766432 22333444332 2 8999999999986432 223334455555534 689999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
||+++|+++.+.+.+
T Consensus 180 gv~~l~~~l~~~l~~ 194 (195)
T 3pqc_A 180 GISELLDLISTLLKE 194 (195)
T ss_dssp THHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHHhhc
Confidence 999999999988753
No 115
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.49 E-value=1.9e-13 Score=95.16 Aligned_cols=82 Identities=12% Similarity=-0.005 Sum_probs=54.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh-------C--CeEEEEeC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL-------H--LHSFAVSA 102 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-------~--~~~~~~Sa 102 (158)
+++|||+++....+.. .++..+.... +|+++|+||+|+.... .++.....+.. + ..++++||
T Consensus 82 ~i~v~d~~~~~~~~~~-~~l~~~~~~~-----~p~ilv~nK~Dl~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa 152 (178)
T 2lkc_A 82 VILVVAADDGVMPQTV-EAINHAKAAN-----VPIIVAINKMDKPEAN---PDRVMQELMEYNLVPEEWGGDTIFCKLSA 152 (178)
T ss_dssp EEEEEETTCCCCHHHH-HHHHHHGGGS-----CCEEEEEETTTSSCSC---HHHHHHHHTTTTCCBTTTTSSEEEEECCS
T ss_pred EEEEEECCCCCcHHHH-HHHHHHHhCC-----CCEEEEEECccCCcCC---HHHHHHHHHhcCcChhHcCCcccEEEEec
Confidence 8999999883222211 2233333322 8999999999996531 22332222222 2 47999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q psy2600 103 RTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~~~ 122 (158)
++|.||+++|+.|.+.+...
T Consensus 153 ~~~~gv~~l~~~l~~~~~~~ 172 (178)
T 2lkc_A 153 KTKEGLDHLLEMILLVSEME 172 (178)
T ss_dssp SSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCCHHHHHHHHHHhhhhh
Confidence 99999999999999987654
No 116
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.49 E-value=7.1e-14 Score=98.96 Aligned_cols=82 Identities=12% Similarity=-0.008 Sum_probs=57.0
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHH----HhCCeEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ----SLHLHSFAVSARTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~----~~~~~~~~~Sa~~~~~ 107 (158)
+++|+|+++..++.... ++..+.... +|+++|+||+|+...+.+.. ....+.+ ..+..++++||++|.|
T Consensus 109 ~i~v~d~~~~~~~~~~~-~~~~~~~~~-----~p~i~v~nK~Dl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~Sa~~~~g 181 (195)
T 1svi_A 109 VVQIVDLRHAPSNDDVQ-MYEFLKYYG-----IPVIVIATKADKIPKGKWDK-HAKVVRQTLNIDPEDELILFSSETKKG 181 (195)
T ss_dssp EEEEEETTSCCCHHHHH-HHHHHHHTT-----CCEEEEEECGGGSCGGGHHH-HHHHHHHHHTCCTTSEEEECCTTTCTT
T ss_pred EEEEEECCCCCCHHHHH-HHHHHHHcC-----CCEEEEEECcccCChHHHHH-HHHHHHHHHcccCCCceEEEEccCCCC
Confidence 88899998876666532 222222222 89999999999976544322 2222322 2357899999999999
Q ss_pred HHHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINPL 120 (158)
Q Consensus 108 i~~lf~~l~~~~~ 120 (158)
|+++|+.+.+.+.
T Consensus 182 v~~l~~~l~~~l~ 194 (195)
T 1svi_A 182 KDEAWGAIKKMIN 194 (195)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhc
Confidence 9999999988763
No 117
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.47 E-value=3.6e-13 Score=102.86 Aligned_cols=85 Identities=19% Similarity=0.081 Sum_probs=71.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC--CeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH--LHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~ 109 (158)
+++|+|+++..++.+...|+..+.... +|+++|+||+|+.............+.+.++ ..++++||++|.|++
T Consensus 96 il~VvD~~~~~~~~~~~~~~~~l~~~~-----~pvilV~NK~Dl~~~~~~~~~~~~~l~~~~~~~~~i~~vSA~~g~gv~ 170 (308)
T 3iev_A 96 ILFMIDATEGWRPRDEEIYQNFIKPLN-----KPVIVVINKIDKIGPAKNVLPLIDEIHKKHPELTEIVPISALKGANLD 170 (308)
T ss_dssp EEEEEETTTBSCHHHHHHHHHHTGGGC-----CCEEEEEECGGGSSSGGGGHHHHHHHHHHCTTCCCEEECBTTTTBSHH
T ss_pred EEEEEeCCCCCCchhHHHHHHHHHhcC-----CCEEEEEECccCCCCHHHHHHHHHHHHHhccCCCeEEEEeCCCCCCHH
Confidence 899999999888888888888887644 8999999999997334445666777777775 779999999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 110 VNTRTPEINPLK 121 (158)
Q Consensus 110 ~lf~~l~~~~~~ 121 (158)
++|+.+.+.+.+
T Consensus 171 ~L~~~l~~~l~~ 182 (308)
T 3iev_A 171 ELVKTILKYLPE 182 (308)
T ss_dssp HHHHHHHHHSCB
T ss_pred HHHHHHHHhCcc
Confidence 999999988753
No 118
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.47 E-value=6.1e-14 Score=96.13 Aligned_cols=78 Identities=17% Similarity=0.018 Sum_probs=55.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHh-hhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDN 107 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~-~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~ 107 (158)
+.+++|+|+++..+. ...|+.... ... +|+++|+||+|+.... ++...++ .++. .++++||++|.|
T Consensus 81 ~~~i~v~d~~~~~~~--~~~~~~~~~~~~~-----~p~ilv~nK~Dl~~~~----~~~~~~~-~~~~~~~~~~Sa~~~~g 148 (161)
T 2dyk_A 81 EVVLFAVDGRAELTQ--ADYEVAEYLRRKG-----KPVILVATKVDDPKHE----LYLGPLY-GLGFGDPIPTSSEHARG 148 (161)
T ss_dssp SEEEEEEESSSCCCH--HHHHHHHHHHHHT-----CCEEEEEECCCSGGGG----GGCGGGG-GGSSCSCEECBTTTTBS
T ss_pred CEEEEEEECCCcccH--hHHHHHHHHHhcC-----CCEEEEEECcccccch----HhHHHHH-hCCCCCeEEEecccCCC
Confidence 349999999875333 223333333 322 8999999999986432 2334444 5676 799999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 108 CWVNTRTPEINP 119 (158)
Q Consensus 108 i~~lf~~l~~~~ 119 (158)
++++|+.+.+.+
T Consensus 149 v~~l~~~l~~~l 160 (161)
T 2dyk_A 149 LEELLEAIWERL 160 (161)
T ss_dssp HHHHHHHHHHHC
T ss_pred hHHHHHHHHHhC
Confidence 999999998764
No 119
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=99.45 E-value=4.3e-13 Score=104.33 Aligned_cols=86 Identities=16% Similarity=0.155 Sum_probs=69.7
Q ss_pred EEEEEECCChh--HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 32 VIFMYDITSGQ--SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 32 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+++|+|+++.. +++....|+..+..... + .|+++|+||+|+.....+ ++...+++..+.+++++||++|.||+
T Consensus 250 illV~D~s~~~~~~~~~~~~~~~~i~~~~~-~--~piilV~NK~Dl~~~~~~--~~~~~~~~~~~~~~~~iSA~~g~gi~ 324 (357)
T 2e87_A 250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFK-D--LPFLVVINKIDVADEENI--KRLEKFVKEKGLNPIKISALKGTGID 324 (357)
T ss_dssp EEEEECTTCTTSSCHHHHHHHHHHHHHHTT-T--SCEEEEECCTTTCCHHHH--HHHHHHHHHTTCCCEECBTTTTBTHH
T ss_pred EEEEEeCCccccCCHHHHHHHHHHHHHhcC-C--CCEEEEEECcccCChHHH--HHHHHHHHhcCCCeEEEeCCCCcCHH
Confidence 88999998877 67778889998886443 2 899999999999754332 34556666778899999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2600 110 VNTRTPEINPLKY 122 (158)
Q Consensus 110 ~lf~~l~~~~~~~ 122 (158)
++|+++.+.+...
T Consensus 325 ~l~~~i~~~l~~~ 337 (357)
T 2e87_A 325 LVKEEIIKTLRPL 337 (357)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988654
No 120
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.45 E-value=1.1e-13 Score=107.21 Aligned_cols=86 Identities=17% Similarity=0.114 Sum_probs=70.8
Q ss_pred EEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC--CeEEEEeCCCCC
Q psy2600 32 VIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH--LHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~~ 106 (158)
+|+|+|+++ +.+++++..|+.++..+......+|+++|+||+|+... .+..+.+.+.++ ..++++||+++.
T Consensus 240 ll~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~----~e~~~~l~~~l~~~~~v~~iSA~tg~ 315 (342)
T 1lnz_A 240 IVHVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA----AENLEAFKEKLTDDYPVFPISAVTRE 315 (342)
T ss_dssp EEEEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH----HHHHHHHHHHCCSCCCBCCCSSCCSS
T ss_pred EEEEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC----HHHHHHHHHHhhcCCCEEEEECCCCc
Confidence 899999998 78999999999999976543223999999999998642 234566777766 679999999999
Q ss_pred CHHHHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEINPLK 121 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~ 121 (158)
|++++|+.|.+.+.+
T Consensus 316 gi~eL~~~l~~~l~~ 330 (342)
T 1lnz_A 316 GLRELLFEVANQLEN 330 (342)
T ss_dssp TTHHHHHHHHHHHTS
T ss_pred CHHHHHHHHHHHHhh
Confidence 999999999998754
No 121
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.45 E-value=8.6e-14 Score=104.70 Aligned_cols=82 Identities=13% Similarity=-0.028 Sum_probs=63.5
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+.+++|+|+++.+++ ..|...+.+.. +|+++|+||+|+...+.+. .+...+++.++++++++||++|.||+
T Consensus 82 d~vi~V~D~t~~e~~---~~~~~~l~~~~-----~p~ilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 152 (272)
T 3b1v_A 82 DSILNVVDATNLERN---LYLTTQLIETG-----IPVTIALNMIDVLDGQGKK-INVDKLSYHLGVPVVATSALKQTGVD 152 (272)
T ss_dssp SEEEEEEEGGGHHHH---HHHHHHHHHTC-----SCEEEEEECHHHHHHTTCC-CCHHHHHHHHTSCEEECBTTTTBSHH
T ss_pred CEEEEEecCCchHhH---HHHHHHHHhcC-----CCEEEEEEChhhCCcCCcH-HHHHHHHHHcCCCEEEEEccCCCCHH
Confidence 448889998775443 45666666533 8999999999986433333 35677888899999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 110 VNTRTPEINPL 120 (158)
Q Consensus 110 ~lf~~l~~~~~ 120 (158)
++|+.+.+.+.
T Consensus 153 el~~~i~~~~~ 163 (272)
T 3b1v_A 153 QVVKKAAHTTT 163 (272)
T ss_dssp HHHHHHHHSCT
T ss_pred HHHHHHHHHHh
Confidence 99999988653
No 122
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.44 E-value=3.8e-14 Score=112.63 Aligned_cols=110 Identities=16% Similarity=0.064 Sum_probs=83.4
Q ss_pred cccccccCCCCcceEEEEEEECCCCCCeE---------------------------------------------------
Q psy2600 3 EVKMLNLHNDNYEIQLKVVLLGDPSCGKI--------------------------------------------------- 31 (158)
Q Consensus 3 ~~~~~~~~~~~~~~~~ki~~~G~~~vgk~--------------------------------------------------- 31 (158)
++.++.++.......+||+++|..++|||
T Consensus 20 e~~~msm~~~~~~~~~kI~IvG~~~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~~~~l~liDTpG~~d~~~l 99 (423)
T 3qq5_A 20 DPRRYTMRLPDAGFRRYIVVAGRRNVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHPIGPVTLVDTPGLDDVGEL 99 (423)
T ss_dssp ----CCCCC---CCCEEEEEECSCSTTTTTTTTSSCC-------------CCCCEEEEEETTTEEEEEEECSSTTCCCTT
T ss_pred chhhCccccCCCCCCEEEEEECCCCCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECCCCeEEEEECcCCCcccch
Confidence 34556777777788899999999999998
Q ss_pred -----------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC
Q psy2600 32 -----------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH 94 (158)
Q Consensus 32 -----------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~ 94 (158)
+|+|+|++.. +....|+..+.+.+ +|+++|+||+|+...... +..+.+++.++
T Consensus 100 ~~~~~~~~~~~l~~aD~vllVvD~~~~---~~~~~~l~~l~~~~-----~piIvV~NK~Dl~~~~~~--~~~~~l~~~~g 169 (423)
T 3qq5_A 100 GRLRVEKARRVFYRADCGILVTDSAPT---PYEDDVVNLFKEME-----IPFVVVVNKIDVLGEKAE--ELKGLYESRYE 169 (423)
T ss_dssp CCCCHHHHHHHHTSCSEEEEECSSSCC---HHHHHHHHHHHHTT-----CCEEEECCCCTTTTCCCT--HHHHHSSCCTT
T ss_pred hHHHHHHHHHHHhcCCEEEEEEeCCCh---HHHHHHHHHHHhcC-----CCEEEEEeCcCCCCccHH--HHHHHHHHHcC
Confidence 7888887332 33456788777664 999999999999765443 45666667778
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
++++++||++|.|++++|+.+.+.+.+.
T Consensus 170 ~~v~~vSAktg~gI~eL~~~L~~~l~~~ 197 (423)
T 3qq5_A 170 AKVLLVSALQKKGFDDIGKTISEILPGD 197 (423)
T ss_dssp CCCCCCSSCCTTSTTTHHHHHHHHSCCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhhhh
Confidence 9999999999999999999999988654
No 123
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=99.43 E-value=3.2e-13 Score=102.90 Aligned_cols=82 Identities=18% Similarity=0.093 Sum_probs=67.6
Q ss_pred CeEEEEEEECCChh-HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhC--CeEEEEeCCCC
Q psy2600 29 GKIVIFMYDITSGQ-SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH--LHSFAVSARTG 105 (158)
Q Consensus 29 gk~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~--~~~~~~Sa~~~ 105 (158)
.+.+|+|||++++. +|..+..|+..++... +|+++|+||+|+...+.+ ++...+++.++ ..+++|||++|
T Consensus 85 ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~-----~piilv~NK~DL~~~~~v--~~~~~~~~~~~~~~~~~~~SAktg 157 (301)
T 1u0l_A 85 VDQVILVVTVKMPETSTYIIDKFLVLAEKNE-----LETVMVINKMDLYDEDDL--RKVRELEEIYSGLYPIVKTSAKTG 157 (301)
T ss_dssp CCEEEEEECSSTTCCCHHHHHHHHHHHHHTT-----CEEEEEECCGGGCCHHHH--HHHHHHHHHHTTTSCEEECCTTTC
T ss_pred CCEEEEEEeCCCCCCCHHHHHHHHHHHHHCC-----CCEEEEEeHHHcCCchhH--HHHHHHHHHHhhhCcEEEEECCCC
Confidence 46799999999987 7888899999877532 999999999999754332 34667777777 89999999999
Q ss_pred CCHHHHHHHHHH
Q psy2600 106 DNCWVNTRTPEI 117 (158)
Q Consensus 106 ~~i~~lf~~l~~ 117 (158)
.||+++|..+..
T Consensus 158 ~gv~~lf~~l~g 169 (301)
T 1u0l_A 158 MGIEELKEYLKG 169 (301)
T ss_dssp TTHHHHHHHHSS
T ss_pred cCHHHHHHHhcC
Confidence 999999997654
No 124
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.42 E-value=8.9e-13 Score=105.09 Aligned_cols=85 Identities=15% Similarity=0.008 Sum_probs=63.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHH-HHHHH----hCCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA-KLAQS----LHLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~ 106 (158)
+++|+|+++..++++. .|+..+.... +|+++|+||+|+........++.. .+.+. .+.+++++||++|.
T Consensus 261 ~llv~D~~~~~s~~~~-~~~~~~~~~~-----~~iiiv~NK~Dl~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~SA~tg~ 334 (436)
T 2hjg_A 261 VAVVLDGEEGIIEQDK-RIAGYAHEAG-----KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 334 (436)
T ss_dssp EEEEEETTTCCCHHHH-HHHHHHHHTT-----CEEEEEEECGGGSCCCTTHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred EEEEEcCCcCCcHHHH-HHHHHHHHcC-----CcEEEEEECccCCCcchHHHHHHHHHHHHhcccCCCCCEEEEecccCC
Confidence 8999999998777765 5777766543 999999999999765443333332 22333 25789999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy2600 107 NCWVNTRTPEINPLKY 122 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~ 122 (158)
||+++|+.+.+.+...
T Consensus 335 ~v~~l~~~i~~~~~~~ 350 (436)
T 2hjg_A 335 RIHTLMPAIIKASENH 350 (436)
T ss_dssp TGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999877653
No 125
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.41 E-value=1.4e-12 Score=104.55 Aligned_cols=85 Identities=15% Similarity=0.001 Sum_probs=64.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh-----CCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL-----HLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-----~~~~~~~Sa~~~~ 106 (158)
+|+|+|+++..+ +....|...+.... +|+++|+||+|+...+....++....++.. +.+++++||++|.
T Consensus 281 ~llviD~~~~~~-~~~~~~~~~~~~~~-----~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 354 (456)
T 4dcu_A 281 VAVVLDGEEGII-EQDKRIAGYAHEAG-----KAVVIVVNKWDAVDKDESTMKEFEENIRDHFQFLDYAPILFMSALTKK 354 (456)
T ss_dssp EEEEEETTTCCC-HHHHHHHHHHHHTT-----CEEEEEEECGGGSCCCSSHHHHHHHHHHHHCGGGTTSCEEECCTTTCT
T ss_pred EEEEEeCCCCcC-HHHHHHHHHHHHcC-----CCEEEEEEChhcCCCchHHHHHHHHHHHHhcccCCCCCEEEEcCCCCc
Confidence 889999887422 23345666655533 899999999999865555556666666654 4789999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy2600 107 NCWVNTRTPEINPLKY 122 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~ 122 (158)
||+++|+.+.+.+...
T Consensus 355 gv~~l~~~i~~~~~~~ 370 (456)
T 4dcu_A 355 RIHTLMPAIIKASENH 370 (456)
T ss_dssp TGGGHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887554
No 126
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.39 E-value=8.9e-14 Score=104.60 Aligned_cols=81 Identities=9% Similarity=-0.056 Sum_probs=60.9
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|+++.+++. .|...+.+.. +|+++|+||+|+...+.+. .....+++.+|++++++||++|.|++++
T Consensus 89 ii~VvD~~~~~~~~---~~~~~l~~~~-----~p~ivv~NK~Dl~~~~~~~-~~~~~l~~~lg~~~i~~SA~~g~gi~el 159 (274)
T 3i8s_A 89 LINVVDASNLERNL---YLTLQLLELG-----IPCIVALNMLDIAEKQNIR-IEIDALSARLGCPVIPLVSTRGRGIEAL 159 (274)
T ss_dssp EEEEEEGGGHHHHH---HHHHHHHHHT-----CCEEEEEECHHHHHHTTEE-ECHHHHHHHHTSCEEECCCGGGHHHHHH
T ss_pred EEEEecCCChHHHH---HHHHHHHhcC-----CCEEEEEECccchhhhhHH-HHHHHHHHhcCCCEEEEEcCCCCCHHHH
Confidence 88899988755444 3444444443 9999999999986433222 2356677888999999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|+.+.+.+..
T Consensus 160 ~~~i~~~~~~ 169 (274)
T 3i8s_A 160 KLAIDRYKAN 169 (274)
T ss_dssp HHHHHTCCCC
T ss_pred HHHHHHHHhc
Confidence 9999887653
No 127
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.38 E-value=2.6e-13 Score=97.93 Aligned_cols=74 Identities=14% Similarity=0.145 Sum_probs=51.4
Q ss_pred EEEEEECC-ChhHHhhHHHHHHHHhhh----cCCCCCcEEEEEEeCCCCCCCcccc------HHHHHHHHHHhCCeEEEE
Q psy2600 32 VIFMYDIT-SGQSFHSIPTWVDLFHLN----RKSSTPTYVALVANKGDMEHQRVVT------LERHAKLAQSLHLHSFAV 100 (158)
Q Consensus 32 ~i~v~d~~-~~~s~~~~~~~~~~~~~~----~~~~~~~piilv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~ 100 (158)
+|+|+|++ ++.+|.....|+.++... .... +|+++|+||+|+...+.+. .++...++...+..|+++
T Consensus 86 ~i~v~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 163 (218)
T 1nrj_B 86 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTARPPSKIKDALESEIQKVIERRKKSLNEV 163 (218)
T ss_dssp EEEEEETTSCTTCCHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred EEEEEECCCChHHHHHHHHHHHHHHhcccccccCC--CCEEEEEEchHhcccCCHHHHHHHHHHHHHHHHHHHhcccccc
Confidence 89999999 889999999998888743 2223 9999999999997655433 345666777777889999
Q ss_pred eCCCCCC
Q psy2600 101 SARTGDN 107 (158)
Q Consensus 101 Sa~~~~~ 107 (158)
||++|.+
T Consensus 164 Sa~~~~~ 170 (218)
T 1nrj_B 164 ERKINEE 170 (218)
T ss_dssp -------
T ss_pred ccccccc
Confidence 9998876
No 128
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.38 E-value=3e-12 Score=103.10 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=60.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|++++.+++.+..+...+.... + +|+++|+||+|+...... ..+.+.+....+++++||++|.||+++
T Consensus 316 vl~VvD~s~~~s~~~~~~~~~~l~~l~--~--~piIvV~NK~Dl~~~~~~---~~~~l~~~~~~~~i~vSAktg~GI~eL 388 (476)
T 3gee_A 316 ILYLLDLGTERLDDELTEIRELKAAHP--A--AKFLTVANKLDRAANADA---LIRAIADGTGTEVIGISALNGDGIDTL 388 (476)
T ss_dssp EEEEEETTTCSSGGGHHHHHHHHHHCT--T--SEEEEEEECTTSCTTTHH---HHHHHHHHHTSCEEECBTTTTBSHHHH
T ss_pred EEEEEECCCCcchhhhHHHHHHHHhcC--C--CCEEEEEECcCCCCccch---hHHHHHhcCCCceEEEEECCCCCHHHH
Confidence 899999999888875433333333222 2 899999999999765433 223344442367999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 112 TRTPEINPL 120 (158)
Q Consensus 112 f~~l~~~~~ 120 (158)
|+.+.+.+.
T Consensus 389 ~~~i~~~~~ 397 (476)
T 3gee_A 389 KQHMGDLVK 397 (476)
T ss_dssp HHHHTHHHH
T ss_pred HHHHHHHHh
Confidence 999999876
No 129
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.35 E-value=1.4e-12 Score=94.30 Aligned_cols=85 Identities=14% Similarity=-0.028 Sum_probs=56.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc--HHHHHHHHHH-------hCCeEEEEeC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT--LERHAKLAQS-------LHLHSFAVSA 102 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~--~~~~~~~~~~-------~~~~~~~~Sa 102 (158)
+++|+|.++..+ .....|+..+.... +|+++|+||+|+....... .......... .+.+++++||
T Consensus 119 vi~v~d~~~~~~-~~~~~~~~~l~~~~-----~p~i~v~nK~Dl~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~SA 192 (223)
T 4dhe_A 119 MILMMDARRPLT-ELDRRMIEWFAPTG-----KPIHSLLTKCDKLTRQESINALRATQKSLDAYRDAGYAGKLTVQLFSA 192 (223)
T ss_dssp EEEEEETTSCCC-HHHHHHHHHHGGGC-----CCEEEEEECGGGSCHHHHHHHHHHHHHHHHHHHHHTCCSCEEEEEEBT
T ss_pred EEEEEeCCCCCC-HHHHHHHHHHHhcC-----CCEEEEEeccccCChhhHHHHHHHHHHHHHhhhhcccCCCCeEEEeec
Confidence 889999876422 22235566665533 8999999999986533321 1112222222 3567999999
Q ss_pred CCCCCHHHHHHHHHHHHHHh
Q psy2600 103 RTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~~~ 122 (158)
++|.||.++|+.|.+.+...
T Consensus 193 ~~g~gv~~l~~~l~~~~~~~ 212 (223)
T 4dhe_A 193 LKRTGLDDAHALIESWLRPA 212 (223)
T ss_dssp TTTBSHHHHHHHHHHHHC--
T ss_pred CCCcCHHHHHHHHHHhcCcc
Confidence 99999999999999988654
No 130
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.34 E-value=1.5e-12 Score=101.30 Aligned_cols=106 Identities=18% Similarity=0.165 Sum_probs=83.6
Q ss_pred ceEEEEEEECCCC-----------CCeEEEEEEECCC----------hhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeC
Q psy2600 15 EIQLKVVLLGDPS-----------CGKIVIFMYDITS----------GQSFHSIPTWVDLFHLNR-KSSTPTYVALVANK 72 (158)
Q Consensus 15 ~~~~ki~~~G~~~-----------vgk~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK 72 (158)
.+.+.+|.+|... -.+++|||||+++ ..+|.+...|+..+.... ..+ +|++|++||
T Consensus 192 ~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~i~~~~~~~~--~piiLv~NK 269 (353)
T 1cip_A 192 DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDSICNNKWFTD--TSIILFLNK 269 (353)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHHHHTCGGGTT--SEEEEEEEC
T ss_pred CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHHHHcCccccC--CcEEEEEEC
Confidence 5778899998764 3578999999999 567888888888887532 123 999999999
Q ss_pred CCCCCCc---------------cccHHHHHHHHH-----------HhCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 73 GDMEHQR---------------VVTLERHAKLAQ-----------SLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 73 ~Dl~~~~---------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+|+...+ .++.+++..++. ..++.+++|||+++.||.++|+++.+.+.+.
T Consensus 270 ~DL~~~ki~~~~l~~~fp~~~g~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~etSA~~~~nV~~vF~~v~~~i~~~ 345 (353)
T 1cip_A 270 KDLFEEKIKKSPLTICYPEYAGSNTYEEAAAYIQCQFEDLNKRKDTKEIYTHFTCATDTKNVQFVFDAVTDVIIKN 345 (353)
T ss_dssp HHHHHHHHTTSCGGGTCTTCCSCSCHHHHHHHHHHHHHTTCSCTTTCCEEEEECCTTCHHHHHHHHHHHHHHHHHH
T ss_pred cCchhhhccccchhhcccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEECcCchhHHHHHHHHHHHHHHH
Confidence 9985321 245677888776 2456789999999999999999999988654
No 131
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.33 E-value=2.9e-13 Score=100.97 Aligned_cols=80 Identities=13% Similarity=0.019 Sum_probs=59.5
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+.+|+|+|+++.+++..+ ...+.... +|+++|+||+|+...+.+. .....+.+.+|++++++||++|.|++
T Consensus 85 d~vi~VvDas~~~~~~~l---~~~l~~~~-----~pvilv~NK~Dl~~~~~~~-~~~~~l~~~lg~~vi~~SA~~g~gi~ 155 (256)
T 3iby_A 85 DCIINVIDACHLERHLYL---TSQLFELG-----KPVVVALNMMDIAEHRGIS-IDTEKLESLLGCSVIPIQAHKNIGIP 155 (256)
T ss_dssp SEEEEEEEGGGHHHHHHH---HHHHTTSC-----SCEEEEEECHHHHHHTTCE-ECHHHHHHHHCSCEEECBGGGTBSHH
T ss_pred CEEEEEeeCCCchhHHHH---HHHHHHcC-----CCEEEEEEChhcCCcCCcH-HHHHHHHHHcCCCEEEEECCCCCCHH
Confidence 448899998876555443 33333332 9999999999986433222 13456778889999999999999999
Q ss_pred HHHHHHHHH
Q psy2600 110 VNTRTPEIN 118 (158)
Q Consensus 110 ~lf~~l~~~ 118 (158)
++|+.+.+.
T Consensus 156 el~~~i~~~ 164 (256)
T 3iby_A 156 ALQQSLLHC 164 (256)
T ss_dssp HHHHHHHTC
T ss_pred HHHHHHHhh
Confidence 999999886
No 132
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.32 E-value=1.3e-12 Score=97.83 Aligned_cols=83 Identities=14% Similarity=0.053 Sum_probs=60.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|.++. +....|...+..... +|+++|+||+|+...+.... ....+.+.++++++++||++|.|+.++
T Consensus 85 vi~v~D~~~~---~~~~~~~~~~~~~~~----~p~ilv~NK~Dl~~~~~~~~-~~~~l~~~lg~~~~~~Sa~~g~gi~~l 156 (271)
T 3k53_A 85 IVDIVDSTCL---MRNLFLTLELFEMEV----KNIILVLNKFDLLKKKGAKI-DIKKMRKELGVPVIPTNAKKGEGVEEL 156 (271)
T ss_dssp EEEEEEGGGH---HHHHHHHHHHHHTTC----CSEEEEEECHHHHHHHTCCC-CHHHHHHHHSSCEEECBGGGTBTHHHH
T ss_pred EEEEecCCcc---hhhHHHHHHHHhcCC----CCEEEEEEChhcCcccccHH-HHHHHHHHcCCcEEEEEeCCCCCHHHH
Confidence 6777777653 233345555554332 79999999999853322222 366788889999999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+.+.+.+...
T Consensus 157 ~~~i~~~~~~~ 167 (271)
T 3k53_A 157 KRMIALMAEGK 167 (271)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHhcc
Confidence 99999887543
No 133
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=99.31 E-value=5.3e-12 Score=96.22 Aligned_cols=82 Identities=18% Similarity=0.152 Sum_probs=65.7
Q ss_pred eEEEEEEECCChh-HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc-HHHHHHHHHHhCCeEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQ-SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT-LERHAKLAQSLHLHSFAVSARTGDN 107 (158)
Q Consensus 30 k~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-~~~~~~~~~~~~~~~~~~Sa~~~~~ 107 (158)
|.+++|+|++++. ++..+..|+..+.... +|+++|+||+|+.....+. .++...+++..+.+++++||++|.|
T Consensus 81 D~vliV~d~~~p~~s~~~l~~~l~~~~~~~-----~~~ilV~NK~DL~~~~~v~~~~~~~~~~~~~g~~~~~~SA~~g~g 155 (302)
T 2yv5_A 81 DRVIIVETLKMPEFNNYLLDNMLVVYEYFK-----VEPVIVFNKIDLLNEEEKKELERWISIYRDAGYDVLKVSAKTGEG 155 (302)
T ss_dssp CEEEEEECSTTTTCCHHHHHHHHHHHHHTT-----CEEEEEECCGGGCCHHHHHHHHHHHHHHHHTTCEEEECCTTTCTT
T ss_pred CEEEEEEECCCCCCCHHHHHHHHHHHHhCC-----CCEEEEEEcccCCCccccHHHHHHHHHHHHCCCeEEEEECCCCCC
Confidence 5599999999886 8888899999877533 8999999999996533222 3445566677789999999999999
Q ss_pred HHHHHHHHH
Q psy2600 108 CWVNTRTPE 116 (158)
Q Consensus 108 i~~lf~~l~ 116 (158)
++++|..+.
T Consensus 156 i~~L~~~l~ 164 (302)
T 2yv5_A 156 IDELVDYLE 164 (302)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHhhcc
Confidence 999998643
No 134
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=99.28 E-value=7.9e-12 Score=97.21 Aligned_cols=108 Identities=14% Similarity=0.069 Sum_probs=79.4
Q ss_pred cceEEEEEEECCCC-----------CCeEEEEEEECC----------ChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEe
Q psy2600 14 YEIQLKVVLLGDPS-----------CGKIVIFMYDIT----------SGQSFHSIPTWVDLFHLNR-KSSTPTYVALVAN 71 (158)
Q Consensus 14 ~~~~~ki~~~G~~~-----------vgk~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~n 71 (158)
..+.+.+|.+|... -++++|+|||++ +..+|++...|++.+.... ... +|++||+|
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~--~piiLvgN 258 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEK--TSFMLFLN 258 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSS--CEEEEEEE
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCC--CeEEEEEE
Confidence 56889999998875 347799999998 7889999999998887432 223 99999999
Q ss_pred CCCCCCCcc--c-------------------cHHHHHHHHHH----------------hCCeEEEEeCCCCCCHHHHHHH
Q psy2600 72 KGDMEHQRV--V-------------------TLERHAKLAQS----------------LHLHSFAVSARTGDNCWVNTRT 114 (158)
Q Consensus 72 K~Dl~~~~~--~-------------------~~~~~~~~~~~----------------~~~~~~~~Sa~~~~~i~~lf~~ 114 (158)
|+|+...+. + +.+++..++.. ..+.+++|||+++.||.++|+.
T Consensus 259 K~DL~~~k~~~v~l~~~~~fp~y~~~~~~~~~~~~a~~~~~~~f~~l~~~~~~~~~~~~~~~~~eTSA~d~~nV~~vF~~ 338 (354)
T 2xtz_A 259 KFDIFEKKVLDVPLNVCEWFRDYQPVSSGKQEIEHAYEFVKKKFEELYYQNTAPDRVDRVFKIYRTTALDQKLVKKTFKL 338 (354)
T ss_dssp CHHHHHHHTTTSCGGGSGGGTTCCCCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTTTTSCEEEEECCTTCHHHHHHHHHH
T ss_pred CcchhhhhcccccccccccccccccccCCCcCHHHHHHHHHHHHHHhhhccccccccCcceEEEEEEeecchhHHHHHHH
Confidence 999843211 1 23556666443 1234689999999999999999
Q ss_pred HHHHHHHhH
Q psy2600 115 PEINPLKYL 123 (158)
Q Consensus 115 l~~~~~~~~ 123 (158)
+.+.+.+..
T Consensus 339 v~~~I~~~~ 347 (354)
T 2xtz_A 339 VDETLRRRN 347 (354)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999887653
No 135
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=99.26 E-value=1.4e-11 Score=96.15 Aligned_cols=107 Identities=17% Similarity=0.139 Sum_probs=81.3
Q ss_pred ceEEEEEEECCCC-----------CCeEEEEEEECCC----------hhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeC
Q psy2600 15 EIQLKVVLLGDPS-----------CGKIVIFMYDITS----------GQSFHSIPTWVDLFHLNR-KSSTPTYVALVANK 72 (158)
Q Consensus 15 ~~~~ki~~~G~~~-----------vgk~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK 72 (158)
.+.+.++.+|... -.+++|||||+++ ..+|.+...|+..+.... ..+ +|+||++||
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~--~piILv~NK 277 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSN--VSIILFLNK 277 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTT--SEEEEEEEC
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCC--CCEEEEEEC
Confidence 4778899998764 3467999999999 789999999998887432 223 999999999
Q ss_pred CCCCCCc----------------cccHHHHHHHHH-----------HhCCeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 73 GDMEHQR----------------VVTLERHAKLAQ-----------SLHLHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 73 ~Dl~~~~----------------~~~~~~~~~~~~-----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
+|+...+ .++.+++..++. ..++.+++|||+++.||.++|+++.+.+.+..
T Consensus 278 ~DL~~~ki~~~~l~~~fp~y~g~~~~~~e~~~~~~~~f~~l~~~~~~~~~~~~~tSA~d~~nV~~vF~~v~~~i~~~~ 355 (362)
T 1zcb_A 278 TDLLEEKVQVVSIKDYFLEFEGDPHCLRDVQKFLVECFRGKRRDQQQRPLYHHFTTAINTENIRLVFRDVKDTILHDN 355 (362)
T ss_dssp HHHHHHHTTTCCGGGTCTTCCSCTTCHHHHHHHHHHHHHTTCSSCC--CCEEEECCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhhccccchhhcCccccCCCCCHHHHHHHHHHHHHHhhcccCCCceEEEEEecCCchhHHHHHHHHHHHHHHHH
Confidence 9985321 245667777652 23567899999999999999999999887643
No 136
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=99.23 E-value=1.8e-11 Score=96.54 Aligned_cols=107 Identities=14% Similarity=0.072 Sum_probs=80.3
Q ss_pred ceEEEEEEECCCC-----------CCeEEEEEEECCC----------hhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeC
Q psy2600 15 EIQLKVVLLGDPS-----------CGKIVIFMYDITS----------GQSFHSIPTWVDLFHLNR-KSSTPTYVALVANK 72 (158)
Q Consensus 15 ~~~~ki~~~G~~~-----------vgk~~i~v~d~~~----------~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK 72 (158)
.+.+.+|.+|... -++++|||||+++ ..+|+....|+..+.... ..+ +|++||+||
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~--~piiLvgNK 293 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRT--ISVILFLNK 293 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSS--CCEEEEEEC
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCC--CeEEEEEEC
Confidence 4778899998764 3577999999999 899999999999987542 233 899999999
Q ss_pred CCCCCCcc---c---------------------------cHHHHHHHH-----HH--------hCCeEEEEeCCCCCCHH
Q psy2600 73 GDMEHQRV---V---------------------------TLERHAKLA-----QS--------LHLHSFAVSARTGDNCW 109 (158)
Q Consensus 73 ~Dl~~~~~---~---------------------------~~~~~~~~~-----~~--------~~~~~~~~Sa~~~~~i~ 109 (158)
+|+...+. + +.+++..++ +. .++.+++|||+++.||.
T Consensus 294 ~DL~~~ki~~~~~~l~~~fp~y~~~~~~~~~~~~~g~~~~~~~a~~fi~~kF~~~~~~~~~~~~~~~~~~TSA~d~~nV~ 373 (402)
T 1azs_C 294 QDLLAEKVLAGKSKIEDYFPEFARYTTPEDATPEPGEDPRVTRAKYFIRDEFLRISTASGDGRHYCYPHFTCAVDTENIR 373 (402)
T ss_dssp HHHHHHHHHHCSSCGGGTCGGGGTCCCCSSCCCCTTCCHHHHHHHHHHHHHHHHHHHTSCTTSSCEEEEECCTTCHHHHH
T ss_pred hhhhhhhhcccccchhhccccccccccccccccccCCcccHHHHHHHHHHHHHHhhccccccCcccEEEEEEeecCcCHH
Confidence 99853221 1 134455553 22 13457899999999999
Q ss_pred HHHHHHHHHHHHhH
Q psy2600 110 VNTRTPEINPLKYL 123 (158)
Q Consensus 110 ~lf~~l~~~~~~~~ 123 (158)
++|..+.+.+....
T Consensus 374 ~vF~~v~~~I~~~~ 387 (402)
T 1azs_C 374 RVFNDCRDIIQRMH 387 (402)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988876653
No 137
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.22 E-value=4.7e-11 Score=95.21 Aligned_cols=85 Identities=18% Similarity=0.097 Sum_probs=56.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHH-HHHHH----hCCeEEEEeCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA-KLAQS----LHLHSFAVSARTGD 106 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~-~~~~~----~~~~~~~~Sa~~~~ 106 (158)
+++|+|+++..++++. .+...+.... +|+++|+||+|+...+....++.. .+.+. .+.+++++||++|.
T Consensus 267 vllv~d~~~~~~~~~~-~i~~~l~~~~-----~~~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SA~~g~ 340 (439)
T 1mky_A 267 VVIVLDATQGITRQDQ-RMAGLMERRG-----RASVVVFNKWDLVVHREKRYDEFTKLFREKLYFIDYSPLIFTSADKGW 340 (439)
T ss_dssp EEEEEETTTCCCHHHH-HHHHHHHHTT-----CEEEEEEECGGGSTTGGGCHHHHHHHHHHHCGGGTTSCEEECBTTTTB
T ss_pred EEEEEeCCCCCCHHHH-HHHHHHHHcC-----CCEEEEEECccCCCchhhHHHHHHHHHHHHhccCCCCcEEEEECCCCC
Confidence 6777887765554432 2333333322 899999999998754433333332 22232 24689999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy2600 107 NCWVNTRTPEINPLKY 122 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~ 122 (158)
||+++|+.+.+.+...
T Consensus 341 gv~~l~~~i~~~~~~~ 356 (439)
T 1mky_A 341 NIDRMIDAMNLAYASY 356 (439)
T ss_dssp SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhh
Confidence 9999999998876553
No 138
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.21 E-value=2.9e-11 Score=97.57 Aligned_cols=79 Identities=18% Similarity=0.125 Sum_probs=58.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+|+|+|++++.++++.. +++.+ . . +|+++|+||+|+... +..++...+.. .+.+++++||++|.||+++
T Consensus 327 vl~VvD~s~~~s~~~~~-il~~l----~-~--~piivV~NK~DL~~~--~~~~~~~~~~~-~~~~~i~iSAktg~Gi~eL 395 (482)
T 1xzp_A 327 VLFVLDASSPLDEEDRK-ILERI----K-N--KRYLVVINKVDVVEK--INEEEIKNKLG-TDRHMVKISALKGEGLEKL 395 (482)
T ss_dssp EEEEEETTSCCCHHHHH-HHHHH----T-T--SSEEEEEEECSSCCC--CCHHHHHHHHT-CSTTEEEEEGGGTCCHHHH
T ss_pred EEEEecCCCCCCHHHHH-HHHHh----c-C--CCEEEEEECcccccc--cCHHHHHHHhc-CCCcEEEEECCCCCCHHHH
Confidence 89999999887776543 33333 1 1 899999999999643 23334443322 3468999999999999999
Q ss_pred HHHHHHHHHH
Q psy2600 112 TRTPEINPLK 121 (158)
Q Consensus 112 f~~l~~~~~~ 121 (158)
|+.|.+.+..
T Consensus 396 ~~~l~~~~~~ 405 (482)
T 1xzp_A 396 EESIYRETQE 405 (482)
T ss_dssp HHHHHHHTHH
T ss_pred HHHHHHHHhh
Confidence 9999997764
No 139
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.21 E-value=4e-11 Score=94.64 Aligned_cols=88 Identities=14% Similarity=-0.039 Sum_probs=63.9
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh------CCeEEEEeCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL------HLHSFAVSAR 103 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~------~~~~~~~Sa~ 103 (158)
|.+|+|+|+++..++.+...|+..+..... .|+++|+||+|+...... .+..+.+.+.. +.+++++||+
T Consensus 100 D~~ilVvda~~~~~~~qt~~~~~~~~~~~~----~~iivviNK~Dl~~~~~~-~~~~~~i~~~l~~~~~~~~~ii~vSA~ 174 (403)
T 3sjy_A 100 DGAILVVAANEPFPQPQTREHFVALGIIGV----KNLIIVQNKVDVVSKEEA-LSQYRQIKQFTKGTWAENVPIIPVSAL 174 (403)
T ss_dssp SEEEEEEETTSCSSCHHHHHHHHHHHHHTC----CCEEEEEECGGGSCHHHH-HHHHHHHHHHHTTSTTTTCCEEECBTT
T ss_pred CEEEEEEECCCCCCcHHHHHHHHHHHHcCC----CCEEEEEECccccchHHH-HHHHHHHHHHHHhhCCCCCEEEEEECC
Confidence 449999999987777788888877775542 589999999998643221 11122222222 4679999999
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q psy2600 104 TGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 104 ~~~~i~~lf~~l~~~~~~~ 122 (158)
+|.||+++++.|.+.+...
T Consensus 175 ~g~gi~~L~~~l~~~l~~~ 193 (403)
T 3sjy_A 175 HKINIDSLIEGIEEYIKTP 193 (403)
T ss_dssp TTBSHHHHHHHHHHHSCCC
T ss_pred CCcChHHHHHHHHHhCCCC
Confidence 9999999999999876543
No 140
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.18 E-value=3.1e-11 Score=96.93 Aligned_cols=79 Identities=13% Similarity=-0.015 Sum_probs=56.7
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVN 111 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 111 (158)
+++|+|.+++.++.. ..|+..+.. .|+++|+||+|+....... ....+. .+.+++++||++|.|++++
T Consensus 307 vl~VvD~s~~~~~~~-~~i~~~l~~-------~piivV~NK~Dl~~~~~~~--~~~~~~--~~~~~i~iSAktg~Gi~eL 374 (462)
T 3geh_A 307 VLLTIDAATGWTTGD-QEIYEQVKH-------RPLILVMNKIDLVEKQLIT--SLEYPE--NITQIVHTAAAQKQGIDSL 374 (462)
T ss_dssp EEEEEETTTCSCHHH-HHHHHHHTT-------SCEEEEEECTTSSCGGGST--TCCCCT--TCCCEEEEBTTTTBSHHHH
T ss_pred EEEEeccCCCCCHHH-HHHHHhccC-------CcEEEEEECCCCCcchhhH--HHHHhc--cCCcEEEEECCCCCCHHHH
Confidence 899999988655543 445555431 7999999999997544332 111111 3467999999999999999
Q ss_pred HHHHHHHHHHh
Q psy2600 112 TRTPEINPLKY 122 (158)
Q Consensus 112 f~~l~~~~~~~ 122 (158)
|+.+.+.+...
T Consensus 375 ~~~i~~~~~~~ 385 (462)
T 3geh_A 375 ETAILEIVQTG 385 (462)
T ss_dssp HHHHHHHHTTS
T ss_pred HHHHHHHHhcc
Confidence 99999987653
No 141
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.18 E-value=5.5e-11 Score=94.82 Aligned_cols=79 Identities=22% Similarity=0.150 Sum_probs=54.8
Q ss_pred EEEEEECCChhHHhh--HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHH-HHHHHHhCC-eEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHS--IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH-AKLAQSLHL-HSFAVSARTGDN 107 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~-~~~~~~~~~-~~~~~Sa~~~~~ 107 (158)
+|+|+|.++..++.+ +..|+. ... +|+++|+||+|+... . .... ..+. .+++ +++++||++|.|
T Consensus 85 il~V~D~~~~~~~~d~~i~~~l~---~~~-----~p~ilv~NK~D~~~~--~-~~~~~~~~~-~lg~~~~~~iSA~~g~g 152 (439)
T 1mky_A 85 VLFVVDGKRGITKEDESLADFLR---KST-----VDTILVANKAENLRE--F-EREVKPELY-SLGFGEPIPVSAEHNIN 152 (439)
T ss_dssp EEEEEETTTCCCHHHHHHHHHHH---HHT-----CCEEEEEESCCSHHH--H-HHHTHHHHG-GGSSCSCEECBTTTTBS
T ss_pred EEEEEECCCCCCHHHHHHHHHHH---HcC-----CCEEEEEeCCCCccc--c-HHHHHHHHH-hcCCCCEEEEeccCCCC
Confidence 999999887544332 223333 222 899999999997421 1 1122 3333 4566 689999999999
Q ss_pred HHHHHHHHHHHHHHh
Q psy2600 108 CWVNTRTPEINPLKY 122 (158)
Q Consensus 108 i~~lf~~l~~~~~~~ 122 (158)
+.++|+.+.+.+.+.
T Consensus 153 v~~L~~~i~~~l~~~ 167 (439)
T 1mky_A 153 LDTMLETIIKKLEEK 167 (439)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcccc
Confidence 999999999988753
No 142
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.17 E-value=3.4e-11 Score=91.70 Aligned_cols=80 Identities=15% Similarity=0.000 Sum_probs=56.0
Q ss_pred EEEEEECCChhHHhhHHHHH-HHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh-C-CeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIPTWV-DLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL-H-LHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~-~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~-~-~~~~~~Sa~~~~~i 108 (158)
+++|+|+++..+.. ..|+ +.+.... .. +|+++|+||+|+..... ......+.+ + .+++++||++|.|+
T Consensus 90 il~VvD~~~~~~~~--~~~i~~~l~~~~-~~--~p~ilV~NK~Dl~~~~~----~~~~~~~~~~~~~~~~~iSA~~g~gv 160 (301)
T 1wf3_A 90 VVWVVDLRHPPTPE--DELVARALKPLV-GK--VPILLVGNKLDAAKYPE----EAMKAYHELLPEAEPRMLSALDERQV 160 (301)
T ss_dssp EEEEEETTSCCCHH--HHHHHHHHGGGT-TT--SCEEEEEECGGGCSSHH----HHHHHHHHTSTTSEEEECCTTCHHHH
T ss_pred EEEEEECCCCCChH--HHHHHHHHHhhc-CC--CCEEEEEECcccCCchH----HHHHHHHHhcCcCcEEEEeCCCCCCH
Confidence 99999998764433 3454 4555442 12 89999999999865332 022333332 3 46899999999999
Q ss_pred HHHHHHHHHHHH
Q psy2600 109 WVNTRTPEINPL 120 (158)
Q Consensus 109 ~~lf~~l~~~~~ 120 (158)
+++|+.+.+.+.
T Consensus 161 ~~l~~~l~~~l~ 172 (301)
T 1wf3_A 161 AELKADLLALMP 172 (301)
T ss_dssp HHHHHHHHTTCC
T ss_pred HHHHHHHHHhcc
Confidence 999999988764
No 143
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=99.17 E-value=3e-11 Score=92.91 Aligned_cols=106 Identities=11% Similarity=0.100 Sum_probs=80.6
Q ss_pred ceEEEEEEECCCC-----------CCeEEEEEEECC----------ChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeC
Q psy2600 15 EIQLKVVLLGDPS-----------CGKIVIFMYDIT----------SGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANK 72 (158)
Q Consensus 15 ~~~~ki~~~G~~~-----------vgk~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK 72 (158)
.+.+.+|.+|... -++++|+|||++ +.++|.+...|+..+.... ..+ +|++|++||
T Consensus 166 ~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~i~~~~~~~~--~~iiL~~NK 243 (327)
T 3ohm_A 166 SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQN--SSVILFLNK 243 (327)
T ss_dssp TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHHHHTSGGGTT--CEEEEEEEC
T ss_pred ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHHHhhhhccCC--ceEEEEEEC
Confidence 4678899998754 447899999665 6677888878888876432 123 999999999
Q ss_pred CCCCCCc----------------cccHHHHHHHHH----------HhCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 73 GDMEHQR----------------VVTLERHAKLAQ----------SLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 73 ~Dl~~~~----------------~~~~~~~~~~~~----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+|+...+ ..+.+++..+.. ..++.+++|||+++.||+++|..+.+.+.+.
T Consensus 244 ~DL~~~ki~~~~l~~~fp~y~g~~~~~e~a~~fi~~~F~~~~~~~~~~i~~~~TsA~d~~nV~~vF~~v~~~Il~~ 319 (327)
T 3ohm_A 244 KDLLEEKIMYSHLVDYFPEYDGPQRDAQAAREFILKMFVDLNPDSDKIIYSHFTCATDTENIRFVFAAVKDTILQL 319 (327)
T ss_dssp HHHHHHHTTTSCGGGTCTTCCSCSSCHHHHHHHHHHHHHSSCTTTTSCEEEEECCTTCHHHHHHHHHHHHHHHHHT
T ss_pred chhhhhhhccchHhhhchhccCCCCCHHHHHHHHHHHHHhhcccccCCcEEEEEEeecCHHHHHHHHHHHHHHHHH
Confidence 9985432 356677777743 3456678999999999999999999998764
No 144
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.14 E-value=3.3e-10 Score=88.37 Aligned_cols=89 Identities=16% Similarity=0.119 Sum_probs=63.2
Q ss_pred EEEEEECCChh--HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc-cHHHHHHHHHHh-C--CeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQ--SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV-TLERHAKLAQSL-H--LHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~--s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~-~~~~~~~~~~~~-~--~~~~~~Sa~~~ 105 (158)
+++|+|++++. +++.+..|...+....... .|+++|+||+|+...... ....+..+++.+ . ..++++||+++
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~--~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~~~~SA~~g 338 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSG--KPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDVIPISALKR 338 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCS--CCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEEEECBTTTT
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCC--CCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcEEEEECCCC
Confidence 88999998876 5666666766666544333 899999999998653210 011233344555 2 36899999999
Q ss_pred CCHHHHHHHHHHHHHHh
Q psy2600 106 DNCWVNTRTPEINPLKY 122 (158)
Q Consensus 106 ~~i~~lf~~l~~~~~~~ 122 (158)
.|++++++.|.+.+...
T Consensus 339 ~gi~~L~~~I~~~l~~~ 355 (364)
T 2qtf_A 339 TNLELLRDKIYQLATQL 355 (364)
T ss_dssp BSHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccc
Confidence 99999999999887654
No 145
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.10 E-value=6.6e-11 Score=94.27 Aligned_cols=79 Identities=19% Similarity=0.117 Sum_probs=53.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 110 (158)
+|+|+|.++..++.+ .|+..+... .+ +|+++|+||+|+..... ....+. .+++ .++++||++|.|+.+
T Consensus 86 il~vvD~~~~~~~~d--~~~~~~l~~--~~--~pvilv~NK~D~~~~~~----~~~~~~-~lg~~~~~~iSA~~g~gv~~ 154 (436)
T 2hjg_A 86 IIFMVNGREGVTAAD--EEVAKILYR--TK--KPVVLAVNKLDNTEMRA----NIYDFY-SLGFGEPYPISGTHGLGLGD 154 (436)
T ss_dssp EEEEEETTTCSCHHH--HHHHHHHTT--CC--SCEEEEEECCCC---------CCCSSG-GGSSCCCEECBTTTTBTHHH
T ss_pred EEEEEeCCCCCCHHH--HHHHHHHHH--cC--CCEEEEEECccCccchh----hHHHHH-HcCCCCeEEEeCcCCCChHH
Confidence 889999987655443 344333321 12 89999999999864221 111122 3454 689999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+++.+.+.+.+
T Consensus 155 L~~~i~~~l~~ 165 (436)
T 2hjg_A 155 LLDAVAEHFKN 165 (436)
T ss_dssp HHHHHHHTGGG
T ss_pred HHHHHHHhcCc
Confidence 99999988864
No 146
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.05 E-value=1.6e-09 Score=89.48 Aligned_cols=87 Identities=13% Similarity=0.063 Sum_probs=67.7
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCe---EEEEeCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLH---SFAVSART 104 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~---~~~~Sa~~ 104 (158)
..|++|+|+|+++..+++....|...... + +|+++|+||+|+.... .......+.+.+++. ++++||++
T Consensus 94 ~aD~aILVVDa~~gv~~qt~~~~~~~~~~-~-----ipiIvViNKiDl~~a~--~~~v~~ei~~~lg~~~~~vi~vSAkt 165 (599)
T 3cb4_D 94 ACEGALLVVDAGQGVEAQTLANCYTAMEM-D-----LEVVPVLNKIDLPAAD--PERVAEEIEDIVGIDATDAVRCSAKT 165 (599)
T ss_dssp HCSEEEEEEETTTCCCTHHHHHHHHHHHT-T-----CEEEEEEECTTSTTCC--HHHHHHHHHHHTCCCCTTCEEECTTT
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHC-C-----CCEEEeeeccCccccc--HHHHHHHHHHHhCCCcceEEEeeccc
Confidence 34679999999988777777777765542 2 8999999999997533 233455666666763 89999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2600 105 GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~ 122 (158)
|.||+++|+.+.+.+...
T Consensus 166 g~GI~~Ll~~I~~~lp~p 183 (599)
T 3cb4_D 166 GVGVQDVLERLVRDIPPP 183 (599)
T ss_dssp CTTHHHHHHHHHHHSCCC
T ss_pred CCCchhHHHHHhhcCCCc
Confidence 999999999999887654
No 147
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.04 E-value=8.3e-10 Score=83.95 Aligned_cols=83 Identities=22% Similarity=0.118 Sum_probs=57.7
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHH
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCW 109 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~ 109 (158)
.+++|+|.++ +.....|+.+.... .. .|+++|+||+|+...+....+....+.+.++. .++.+||+++.|+.
T Consensus 91 ~vl~Vvd~~~---~~~~~~~i~~~l~~--~~--~P~ilvlNK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 91 LVIFVVEGTR---WTPDDEMVLNKLRE--GK--APVILAVNKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp EEEEEEETTC---CCHHHHHHHHHHHS--SS--SCEEEEEESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred EEEEEEeCCC---CCHHHHHHHHHHHh--cC--CCEEEEEECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 3889999876 44444455443321 11 89999999999875222223344555555665 68999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 110 VNTRTPEINPL 120 (158)
Q Consensus 110 ~lf~~l~~~~~ 120 (158)
++++.+.+.+.
T Consensus 164 ~l~~~i~~~l~ 174 (301)
T 1ega_A 164 TIAAIVRKHLP 174 (301)
T ss_dssp HHHHHHHTTCC
T ss_pred HHHHHHHHhCC
Confidence 99999987664
No 148
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.03 E-value=3.2e-10 Score=87.63 Aligned_cols=105 Identities=13% Similarity=0.065 Sum_probs=78.9
Q ss_pred ceEEEEEEECCCC-----------CCeEEEEEEECC----------ChhHHhhHHHHHHHHhhhc-CCCCCcEEEEEEeC
Q psy2600 15 EIQLKVVLLGDPS-----------CGKIVIFMYDIT----------SGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANK 72 (158)
Q Consensus 15 ~~~~ki~~~G~~~-----------vgk~~i~v~d~~----------~~~s~~~~~~~~~~~~~~~-~~~~~~piilv~nK 72 (158)
.+.+.+|.+|... -++++|||||++ +..+|.+...|+..+.... ..+ +|++|++||
T Consensus 160 ~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~~i~~~~~~~~--~piiLv~NK 237 (340)
T 4fid_A 160 DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFKDIMTNEFLKG--AVKLIFLNK 237 (340)
T ss_dssp SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHHHHHHCGGGTT--SEEEEEEEC
T ss_pred eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHHHHhhhhccCC--CeEEEEEEC
Confidence 4678899988764 457899999998 7788998888888887432 233 999999999
Q ss_pred CCCCCCc---------------cccHHHHHHHHHH-h--------------------------CCeEEEEeCCCCCCHHH
Q psy2600 73 GDMEHQR---------------VVTLERHAKLAQS-L--------------------------HLHSFAVSARTGDNCWV 110 (158)
Q Consensus 73 ~Dl~~~~---------------~~~~~~~~~~~~~-~--------------------------~~~~~~~Sa~~~~~i~~ 110 (158)
+|+...+ ..+.+++..++.. + ++-+++|||++..||..
T Consensus 238 ~DL~~eki~~~~l~~~fp~y~g~~~~e~a~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~iy~h~TsA~dt~nv~~ 317 (340)
T 4fid_A 238 MDLFEEKLTKVPLNTIFPEYTGGDNAVMGAQYIQQLFTGKLQTEEMNISGADGTANIEGAVNEKVYTNPTNATDGSNIKR 317 (340)
T ss_dssp HHHHHHHHHHSCGGGTCTTCCCTTCHHHHHHHHHHHHHTTSEEEESCC--------------CEEEEEEECTTCHHHHHH
T ss_pred chhhhhhcCcchHHHhhhhhcCCCCHHHHHHHHHHhcccccchhhhhccccccccccccccCcceEEEEEEeeCcHHHHH
Confidence 9984311 0134455444432 2 25578999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+|..+.+.+.+
T Consensus 318 vF~~v~~~Il~ 328 (340)
T 4fid_A 318 VFMLAVDVIMK 328 (340)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998887
No 149
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.00 E-value=2.4e-09 Score=88.36 Aligned_cols=87 Identities=13% Similarity=0.076 Sum_probs=67.6
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC---eEEEEeCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL---HSFAVSART 104 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~---~~~~~Sa~~ 104 (158)
..+++|+|+|+++..+++....|..... .. +|+++|+||+|+.... ......++.+.+++ +++++||++
T Consensus 96 ~aD~aILVVDa~~gv~~qt~~~~~~a~~-~~-----ipiIvviNKiDl~~a~--~~~v~~el~~~lg~~~~~vi~vSAkt 167 (600)
T 2ywe_A 96 ACEGALLLIDASQGIEAQTVANFWKAVE-QD-----LVIIPVINKIDLPSAD--VDRVKKQIEEVLGLDPEEAILASAKE 167 (600)
T ss_dssp TCSEEEEEEETTTBCCHHHHHHHHHHHH-TT-----CEEEEEEECTTSTTCC--HHHHHHHHHHTSCCCGGGCEECBTTT
T ss_pred hCCEEEEEEECCCCccHHHHHHHHHHHH-CC-----CCEEEEEeccCccccC--HHHHHHHHHHhhCCCcccEEEEEeec
Confidence 4577999999999877877777776553 22 8999999999997533 22334556666675 489999999
Q ss_pred CCCHHHHHHHHHHHHHHh
Q psy2600 105 GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~~~ 122 (158)
|.||+++|+.+++.+...
T Consensus 168 g~GI~~Lle~I~~~lp~p 185 (600)
T 2ywe_A 168 GIGIEEILEAIVNRIPPP 185 (600)
T ss_dssp TBSHHHHHHHHHHHSCCC
T ss_pred CCCchHHHHHHHHhcccc
Confidence 999999999999887654
No 150
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=98.93 E-value=4e-09 Score=85.09 Aligned_cols=81 Identities=15% Similarity=0.032 Sum_probs=57.0
Q ss_pred EEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHHHHHHHHHh----CCeEEEEeC
Q psy2600 32 VIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLERHAKLAQSL----HLHSFAVSA 102 (158)
Q Consensus 32 ~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~----~~~~~~~Sa 102 (158)
+|+|+|+++ +++++.+ ..+.... +|+++|+||+|+...... ..++...+.+.. +.+++++||
T Consensus 100 ~ilVvda~~g~~~qt~e~l----~~~~~~~-----ip~IvviNK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~ii~vSA 170 (482)
T 1wb1_A 100 ALIVVDAKEGPKTQTGEHM----LILDHFN-----IPIIVVITKSDNAGTEEIKRTEMIMKSILQSTHNLKNSSIIPISA 170 (482)
T ss_dssp EEEEEETTTCSCHHHHHHH----HHHHHTT-----CCBCEEEECTTSSCHHHHHHHHHHHHHHHHHSSSGGGCCEEECCT
T ss_pred EEEEEecCCCccHHHHHHH----HHHHHcC-----CCEEEEEECCCcccchhHHHHHHHHHHHHhhhcccccceEEEEEC
Confidence 999999987 4454433 3333333 788999999999642211 123344455444 467999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~~~ 121 (158)
++|.|+.++++.|.+.+..
T Consensus 171 ~~g~gI~~L~~~L~~~i~~ 189 (482)
T 1wb1_A 171 KTGFGVDELKNLIITTLNN 189 (482)
T ss_dssp TTCTTHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHhhcC
Confidence 9999999999999998753
No 151
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.93 E-value=2.4e-10 Score=89.08 Aligned_cols=82 Identities=11% Similarity=0.143 Sum_probs=47.6
Q ss_pred EEEECCC-hhHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccH--HHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 34 FMYDITS-GQSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTL--ERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 34 ~v~d~~~-~~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
++|++++ ..++..+. .|+..+. .. +|+|+|+||+|+...+.+.. ..+..+++.+++.++++||+++.+ .
T Consensus 149 ~vy~I~~~~~~l~~~d~~~~~~l~----~~--~piIlV~NK~Dl~~~~ev~~~k~~i~~~~~~~~i~~~~~Sa~~~~~-~ 221 (361)
T 2qag_A 149 CFYFISPFGHGLKPLDVAFMKAIH----NK--VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAESDE-D 221 (361)
T ss_dssp EEEEECSSSSSCCHHHHHHHHHTC----S---SCEEEEEECCSSSCHHHHHHHHHHHHHHTTCC-CCSCCCC--------
T ss_pred EEEEEecCCCCcchhHHHHHHHhc----cC--CCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEeCCCcCCCc-c
Confidence 5555554 34455443 3444332 22 89999999999976554433 455666667788999999999999 8
Q ss_pred HHHHHHHHHHHHh
Q psy2600 110 VNTRTPEINPLKY 122 (158)
Q Consensus 110 ~lf~~l~~~~~~~ 122 (158)
+.|..+.+.+...
T Consensus 222 e~~~~l~~~i~~~ 234 (361)
T 2qag_A 222 EDFKEQTRLLKAS 234 (361)
T ss_dssp --CHHHHHHHHHT
T ss_pred hhHHHHHHHHHhc
Confidence 8888888887654
No 152
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=98.90 E-value=8.9e-09 Score=75.34 Aligned_cols=88 Identities=6% Similarity=-0.070 Sum_probs=52.8
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc------HHHHHHHHHHhCCeEEEEeCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT------LERHAKLAQSLHLHSFAVSARTG 105 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~------~~~~~~~~~~~~~~~~~~Sa~~~ 105 (158)
+|+|+|+++... ....|+..+..........|+++|+||+|+.....+. .+....+.+..+..|+.+++..+
T Consensus 116 ~l~v~d~~~~~~--~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~~~~~~~i~~~~~~l~~l~~~~~~~~~~~~~~~~ 193 (239)
T 3lxx_A 116 LLLVVPLGRYTE--EEHKATEKILKMFGERARSFMILIFTRKDDLGDTNLHDYLREAPEDIQDLMDIFGDRYCALNNKAT 193 (239)
T ss_dssp EEEEEETTCCSS--HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC------------CHHHHHHHHHHSSSEEECCTTCC
T ss_pred EEEEeeCCCCCH--HHHHHHHHHHHHhhhhccceEEEEEeCCccCCcccHHHHHHhchHHHHHHHHHcCCEEEEEECCCC
Confidence 889999875332 1123333333110000006899999999986543332 23567777888877877777654
Q ss_pred -----CCHHHHHHHHHHHHHH
Q psy2600 106 -----DNCWVNTRTPEINPLK 121 (158)
Q Consensus 106 -----~~i~~lf~~l~~~~~~ 121 (158)
.++.++|..+.+.+.+
T Consensus 194 ~~~~~~~v~~ll~~i~~~~~~ 214 (239)
T 3lxx_A 194 GAEQEAQRAQLLGLIQRVVRE 214 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHH
Confidence 5888999888877754
No 153
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=98.89 E-value=3e-09 Score=83.16 Aligned_cols=83 Identities=4% Similarity=-0.100 Sum_probs=58.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEE-EEEEe-CCCCCCCccccH--HHHHHHHHHhC---CeEEE--EeC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV-ALVAN-KGDMEHQRVVTL--ERHAKLAQSLH---LHSFA--VSA 102 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ilv~n-K~Dl~~~~~~~~--~~~~~~~~~~~---~~~~~--~Sa 102 (158)
+|+|+| + ...+.+...|+..+.... +|. ++++| |+|+ ....+.. ++...+.+..+ +++++ +||
T Consensus 87 ailVvd-~-~g~~~qt~e~~~~~~~~~-----i~~~ivvvNNK~Dl-~~~~~~~~~~~i~~~l~~~~~~~~~ii~~~~SA 158 (370)
T 2elf_A 87 AVLCIP-P-QGLDAHTGECIIALDLLG-----FKHGIIALTRSDST-HMHAIDELKAKLKVITSGTVLQDWECISLNTNK 158 (370)
T ss_dssp EEEEEC-T-TCCCHHHHHHHHHHHHTT-----CCEEEEEECCGGGS-CHHHHHHHHHHHHHHTTTSTTTTCEEEECCCCT
T ss_pred EEEEEc-C-CCCcHHHHHHHHHHHHcC-----CCeEEEEEEeccCC-CHHHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 899999 4 445666667777666554 665 88898 9998 4322211 23444444333 68999 999
Q ss_pred CC---CCCHHHHHHHHHHHHHHh
Q psy2600 103 RT---GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 103 ~~---~~~i~~lf~~l~~~~~~~ 122 (158)
++ +.|++++++.|.+.+...
T Consensus 159 ~~~~~g~gi~~L~~~l~~~~~~~ 181 (370)
T 2elf_A 159 SAKNPFEGVDELKARINEVAEKI 181 (370)
T ss_dssp TSSSTTTTHHHHHHHHHHHHHHH
T ss_pred ccCcCCCCHHHHHHHHHhhcccc
Confidence 99 999999999999887653
No 154
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=98.89 E-value=9.5e-09 Score=83.74 Aligned_cols=40 Identities=20% Similarity=0.235 Sum_probs=30.1
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
+|+|+|+++..+......|. .+...+ +|+++|+||+|+..
T Consensus 109 allVvDa~~g~~~~t~~~~~-~~~~~~-----iPiivviNK~Dl~~ 148 (528)
T 3tr5_A 109 ALMVIDAAKGVEPRTIKLME-VCRLRH-----TPIMTFINKMDRDT 148 (528)
T ss_dssp EEEEEETTTCSCHHHHHHHH-HHHTTT-----CCEEEEEECTTSCC
T ss_pred EEEEEeCCCCCCHHHHHHHH-HHHHcC-----CCEEEEEeCCCCcc
Confidence 99999999876666655553 344333 89999999999864
No 155
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.89 E-value=2.7e-09 Score=84.53 Aligned_cols=90 Identities=13% Similarity=0.077 Sum_probs=66.1
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
+.+++++|++ ..++.++..|..++..+.......|.++|+||+|+... ..........+..+..++.+||+++.|++
T Consensus 237 ~~lL~vvDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~--~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 237 RVLLYVLDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE--EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp SEEEEEEETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH--HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred HhhhEEeCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH--HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 3489999998 66787887787777654311001788999999998653 12233444455567889999999999999
Q ss_pred HHHHHHHHHHHHh
Q psy2600 110 VNTRTPEINPLKY 122 (158)
Q Consensus 110 ~lf~~l~~~~~~~ 122 (158)
++++.+.+.+.+.
T Consensus 314 eL~~~i~~~l~~~ 326 (416)
T 1udx_A 314 ALKEALHALVRST 326 (416)
T ss_dssp HHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhc
Confidence 9999999998764
No 156
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=98.88 E-value=1.9e-09 Score=79.86 Aligned_cols=87 Identities=11% Similarity=0.007 Sum_probs=51.6
Q ss_pred EEEEEECCChhHH-hhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccH-------HHHHHHHHHhCCe---E--E
Q psy2600 32 VIFMYDITSGQSF-HSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTL-------ERHAKLAQSLHLH---S--F 98 (158)
Q Consensus 32 ~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~-------~~~~~~~~~~~~~---~--~ 98 (158)
+|+|+|+++.... ..+..|+.++....... .+++++.||+|+... .+.. .....+++..+.. + +
T Consensus 109 il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~--~~i~vv~nK~Dl~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 185 (260)
T 2xtp_A 109 LLLVTQLGRYTSQDQQAAQRVKEIFGEDAMG--HTIVLFTHKEDLNGG-SLMDYMHDSDNKALSKLVAACGGRICAFNNR 185 (260)
T ss_dssp EEEEEETTCCCHHHHHHHHHHHHHHCGGGGG--GEEEEEECGGGGTTC-CHHHHHHHCCCHHHHHHHHHTTTCEEECCTT
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhCchhhc--cEEEEEEcccccCCc-cHHHHHHhcchHHHHHHHHHhCCeEEEecCc
Confidence 8899998862221 12223444332111010 444455559999743 2222 2244466665532 2 7
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
++||+++.|++++|..+.+.+..
T Consensus 186 ~~SA~~~~gv~~l~~~i~~~~~~ 208 (260)
T 2xtp_A 186 AEGSNQDDQVKELMDCIEDLLME 208 (260)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHHHHHHHh
Confidence 89999999999999999998865
No 157
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=98.85 E-value=1.4e-08 Score=81.90 Aligned_cols=76 Identities=12% Similarity=0.054 Sum_probs=43.4
Q ss_pred EEEEEECCChhHHhh------HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHH----HHHHHHh-----CCe
Q psy2600 32 VIFMYDITSGQSFHS------IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERH----AKLAQSL-----HLH 96 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~------~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~----~~~~~~~-----~~~ 96 (158)
+|+|+|+++..++.. ....+..+.... . .|+++|+||+|+........++. ..+.+.. +++
T Consensus 138 ~llVvDa~~g~~~~~~~~~~qt~e~~~~~~~~~-~---~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~~~~~~ 213 (483)
T 3p26_A 138 AILCVDCSTNAFESGFDLDGQTKEHMLLASSLG-I---HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNIN 213 (483)
T ss_dssp EEEEEECCC------CCCCHHHHHHHHHHHHTT-C---CCEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCCGGGEE
T ss_pred EEEEEECCCCccccccchhhhHHHHHHHHHHcC-C---CcEEEEEECcCcccchHHHHHHHHHHHHHHHHHcCCCcccce
Confidence 999999998654322 122222222222 1 56999999999875322222222 2233333 357
Q ss_pred EEEEeCCCCCCHHHH
Q psy2600 97 SFAVSARTGDNCWVN 111 (158)
Q Consensus 97 ~~~~Sa~~~~~i~~l 111 (158)
++++||++|.||.++
T Consensus 214 ~i~iSA~~g~gi~el 228 (483)
T 3p26_A 214 WVPISGFSGEGVYKI 228 (483)
T ss_dssp EEECCSSSCTTSSSS
T ss_pred EEEEeeecCCCcccc
Confidence 899999999998753
No 158
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=98.85 E-value=1.3e-08 Score=71.52 Aligned_cols=47 Identities=17% Similarity=0.236 Sum_probs=37.9
Q ss_pred EEEEEECC-ChhHHhhHHHHHHHHhhhc----CCCCCcEEEEEEeCCCCCCCcc
Q psy2600 32 VIFMYDIT-SGQSFHSIPTWVDLFHLNR----KSSTPTYVALVANKGDMEHQRV 80 (158)
Q Consensus 32 ~i~v~d~~-~~~s~~~~~~~~~~~~~~~----~~~~~~piilv~nK~Dl~~~~~ 80 (158)
+|+|||++ +..+|.....|+..+.... ... +|+++|+||+|+.....
T Consensus 122 ~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~p~ilv~nK~Dl~~~~~ 173 (193)
T 2ged_A 122 LIFMVDSTVDPKKLTTTAEFLVDILSITESSCENG--IDILIACNKSELFTARP 173 (193)
T ss_dssp EEEEEETTCCHHHHHHHHHHHHHHHHHHHHHSTTC--CCEEEEEECTTSTTCCC
T ss_pred EEEEEECCCCchhHHHHHHHHHHHHhhhhhccccC--CCEEEEEEchHhcCCCC
Confidence 99999999 8999999988888876432 122 99999999999975443
No 159
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=98.84 E-value=1.5e-09 Score=81.36 Aligned_cols=57 Identities=7% Similarity=-0.033 Sum_probs=31.7
Q ss_pred cEEEEEEeCCCCCCCcccc--HHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVT--LERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~--~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+|+++|+||+|+....... ...........++.++.+||.++.|+.+++..|.+.++
T Consensus 145 ~pvi~V~nK~D~~~~~e~~~~~~~i~~~l~~~~i~v~~~sa~~~~~~~~l~~~l~~~~p 203 (274)
T 3t5d_A 145 VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEENKLVKKIKDRLP 203 (274)
T ss_dssp SCEEEEESSGGGSCHHHHHHHHHHHHHHHHHTTCCCCCC-----------CHHHHHTCS
T ss_pred CCEEEEEeccCCCCHHHHHHHHHHHHHHHHHcCCeEEcCCCCCChhHHHHHHHHhcCCC
Confidence 8999999999986432221 12233444566888999999999999999999887653
No 160
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=98.83 E-value=3.4e-09 Score=84.80 Aligned_cols=79 Identities=19% Similarity=0.125 Sum_probs=48.3
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCC-eEEEEeCCCCCCHHH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHL-HSFAVSARTGDNCWV 110 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~-~~~~~Sa~~~~~i~~ 110 (158)
+|+|+|..+. +.....|+.++... .+ +|+++|+||+|+.... .....+. ..+. .++++||++|.|+.+
T Consensus 106 il~VvD~~~~--~~~~d~~l~~~l~~--~~--~pvilV~NK~D~~~~~----~~~~e~~-~lg~~~~~~iSA~~g~gv~~ 174 (456)
T 4dcu_A 106 IIFMVNGREG--VTAADEEVAKILYR--TK--KPVVLAVNKLDNTEMR----ANIYDFY-SLGFGEPYPISGTHGLGLGD 174 (456)
T ss_dssp EEEEEESSSC--SCHHHHHHHHHHTT--CC--SCEEEEEECC-------------CCSG-GGSSSSEEECCTTTCTTHHH
T ss_pred EEEEEeCCCC--CChHHHHHHHHHHH--cC--CCEEEEEECccchhhh----hhHHHHH-HcCCCceEEeecccccchHH
Confidence 8899997653 33334444444322 12 8999999999985321 1111111 2333 468999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
+++.+.+.+..
T Consensus 175 L~~~i~~~l~~ 185 (456)
T 4dcu_A 175 LLDAVAEHFKN 185 (456)
T ss_dssp HHHHHHTTGGG
T ss_pred HHHHHHhhccc
Confidence 99999987754
No 161
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=98.80 E-value=9.1e-10 Score=89.77 Aligned_cols=82 Identities=17% Similarity=0.153 Sum_probs=53.6
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc--cccHHHHHHH---HHHh--CCeEEEEeCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR--VVTLERHAKL---AQSL--HLHSFAVSART 104 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~--~~~~~~~~~~---~~~~--~~~~~~~Sa~~ 104 (158)
+|+|+|+++....+.... +..+.... +|+++|+||+|+.... .+.. +...+ ++.+ ..+++++||++
T Consensus 79 vILVVDa~dg~~~qt~e~-l~~~~~~~-----vPiIVViNKiDl~~~~~~~v~~-~l~~~~~~~e~~~~~~~iv~vSAkt 151 (537)
T 3izy_P 79 VILVVAADDGVMKQTVES-IQHAKDAH-----VPIVLAINKCDKAEADPEKVKK-ELLAYDVVCEDYGGDVQAVHVSALT 151 (537)
T ss_dssp CEEECBSSSCCCHHHHHH-HHHHHTTT-----CCEEECCBSGGGTTTSCCSSSS-HHHHTTSCCCCSSSSEEECCCCSSS
T ss_pred EEEEEECCCCccHHHHHH-HHHHHHcC-----CcEEEEEecccccccchHHHHH-HHHhhhhhHHhcCCCceEEEEECCC
Confidence 999999988544433332 33333332 8999999999986321 1111 11111 1122 24789999999
Q ss_pred CCCHHHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEINPL 120 (158)
Q Consensus 105 ~~~i~~lf~~l~~~~~ 120 (158)
|.|+.++|+.+...+.
T Consensus 152 G~GI~eLle~I~~l~~ 167 (537)
T 3izy_P 152 GENMMALAEATIALAE 167 (537)
T ss_dssp SCSSHHHHHHHHHHHT
T ss_pred CCCchhHHHHHHHhhh
Confidence 9999999999998764
No 162
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=98.78 E-value=1.7e-08 Score=78.83 Aligned_cols=81 Identities=25% Similarity=0.270 Sum_probs=59.0
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH----HHHHhCC---eEEEEeC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK----LAQSLHL---HSFAVSA 102 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~---~~~~~Sa 102 (158)
+.+++|+|++++. ..|...+.+.... .|+++|+||+|+.... ...+.... +++..|. .++.+||
T Consensus 71 ~~il~VvD~~d~~-----~~~~~~l~~~~~~---~p~ilV~NK~DL~~~~-~~~~~~~~~l~~~~~~~g~~~~~v~~iSA 141 (368)
T 3h2y_A 71 ALVVKIVDIFDFN-----GSWLPGLHRFVGN---NKVLLVGNKADLIPKS-VKHDKVKHWMRYSAKQLGLKPEDVFLISA 141 (368)
T ss_dssp CEEEEEEETTSHH-----HHCCTTHHHHSSS---SCEEEEEECGGGSCTT-SCHHHHHHHHHHHHHHTTCCCSEEEECCT
T ss_pred cEEEEEEECCCCc-----ccHHHHHHHHhCC---CcEEEEEEChhcCCcc-cCHHHHHHHHHHHHHHcCCCcccEEEEeC
Confidence 4599999998853 3566666654332 8999999999996432 22233333 3566676 7999999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEINP 119 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~ 119 (158)
++|.|++++++.+.+..
T Consensus 142 ~~g~gi~~L~~~l~~~~ 158 (368)
T 3h2y_A 142 AKGQGIAELADAIEYYR 158 (368)
T ss_dssp TTCTTHHHHHHHHHHHH
T ss_pred CCCcCHHHHHhhhhhhc
Confidence 99999999999987643
No 163
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=98.77 E-value=1.4e-08 Score=79.98 Aligned_cols=88 Identities=11% Similarity=-0.086 Sum_probs=59.0
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCccc---cHHHHHHHHHHhC-----CeEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVV---TLERHAKLAQSLH-----LHSF 98 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~ 98 (158)
..|.+|+|+|+++....+.. .++..+.... +| +++|+||+|+...... ...+...+.+.++ .+++
T Consensus 89 ~aD~~ilVvda~~g~~~qt~-e~l~~~~~~~-----vp~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i 162 (397)
T 1d2e_A 89 PLDGCILVVAANDGPMPQTR-EHLLLARQIG-----VEHVVVYVNKADAVQDSEMVELVELEIRELLTEFGYKGEETPII 162 (397)
T ss_dssp CCSEEEEEEETTTCSCHHHH-HHHHHHHHTT-----CCCEEEEEECGGGCSCHHHHHHHHHHHHHHHHHTTSCTTTSCEE
T ss_pred hCCEEEEEEECCCCCCHHHH-HHHHHHHHcC-----CCeEEEEEECcccCCCHHHHHHHHHHHHHHHHHcCCCcccCcEE
Confidence 35779999999885433323 3334444433 77 7899999998642211 1234556666665 5799
Q ss_pred EEeCCCCCC----------HHHHHHHHHHHHHH
Q psy2600 99 AVSARTGDN----------CWVNTRTPEINPLK 121 (158)
Q Consensus 99 ~~Sa~~~~~----------i~~lf~~l~~~~~~ 121 (158)
++||++|.| +.++++.+.+.+..
T Consensus 163 ~~SA~~g~n~~~~~~~~g~i~~Ll~~l~~~~p~ 195 (397)
T 1d2e_A 163 VGSALCALEQRDPELGLKSVQKLLDAVDTYIPV 195 (397)
T ss_dssp ECCHHHHHTTCCTTTTHHHHHHHHHHHHHHSCC
T ss_pred EeehhhcccccCCCccCCcHHHHHHHHHHhCCC
Confidence 999999765 88899888876653
No 164
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=98.75 E-value=4.9e-08 Score=77.86 Aligned_cols=77 Identities=16% Similarity=0.165 Sum_probs=47.4
Q ss_pred EEEEEECCChh---HHh---hHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCc---c---ccHHHHHHHHHHhC----
Q psy2600 32 VIFMYDITSGQ---SFH---SIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQR---V---VTLERHAKLAQSLH---- 94 (158)
Q Consensus 32 ~i~v~d~~~~~---s~~---~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~---~---~~~~~~~~~~~~~~---- 94 (158)
+|+|+|+++.. +|+ +....+..+.... +| +++|+||+|+.... . ....+...+.+.++
T Consensus 122 ~ilVVDa~~g~~e~~~~~~~qt~e~l~~~~~~~-----v~~iIvviNK~Dl~~~~~~~~~~~~i~~~~~~~l~~~g~~~~ 196 (439)
T 3j2k_7 122 AVLVISARKGEFETGFEKGGQTREHAMLAKTAG-----VKHLIVLINKMDDPTVNWSNERYEECKEKLVPFLKKVGFNPK 196 (439)
T ss_pred EEEEEECCCCccccccCCCchHHHHHHHHHHcC-----CCeEEEEeecCCCcccchHHHHHHHHHHHHHHHHHHhccccc
Confidence 89999998742 222 2222233333322 55 99999999985311 0 11223344444444
Q ss_pred --CeEEEEeCCCCCCHHHHHH
Q psy2600 95 --LHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 95 --~~~~~~Sa~~~~~i~~lf~ 113 (158)
++++++||++|.|+.++++
T Consensus 197 ~~~~~i~iSA~~G~ni~~l~~ 217 (439)
T 3j2k_7 197 KDIHFMPCSGLTGANLKEQSD 217 (439)
T ss_pred CCeeEEEeeccCCcccccccc
Confidence 4699999999999999765
No 165
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.75 E-value=4.2e-08 Score=77.46 Aligned_cols=86 Identities=13% Similarity=0.045 Sum_probs=54.2
Q ss_pred CCeEEEEEEECCC----hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc--ccHHHHHHHHHH---hCCeEE
Q psy2600 28 CGKIVIFMYDITS----GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV--VTLERHAKLAQS---LHLHSF 98 (158)
Q Consensus 28 vgk~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~ 98 (158)
..|.+|+|+|+++ +++++.+.. +..... .|+++|+||+|+..... ...++...+.+. .+.+++
T Consensus 104 ~~D~~ilVvda~~g~~~~qt~e~l~~----~~~l~~----~~iivv~NK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i 175 (408)
T 1s0u_A 104 LMDGAILVIAANEPCPQPQTKEHLMA----LEILGI----DKIIIVQNKIDLVDEKQAEENYEQIKEFVKGTIAENAPII 175 (408)
T ss_dssp CCSEEEEEEETTSCSSCHHHHHHHHH----HHHTTC----CCEEEEEECTTSSCTTTTTTHHHHHHHHHTTSTTTTCCEE
T ss_pred hCCEEEEEEECCCCCCCchhHHHHHH----HHHcCC----CeEEEEEEccCCCCHHHHHHHHHHHHHHHhhcCCCCCeEE
Confidence 4588999999985 345544432 222221 57999999999975332 223445555554 257899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
++||++|.||+++++.|.+.+..
T Consensus 176 ~vSA~~g~gi~~L~~~l~~~i~~ 198 (408)
T 1s0u_A 176 PISAHHEANIDVLLKAIQDFIPT 198 (408)
T ss_dssp EC------CHHHHHHHHHHHSCC
T ss_pred EeeCCCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999987654
No 166
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=98.73 E-value=5.9e-08 Score=71.60 Aligned_cols=89 Identities=10% Similarity=-0.064 Sum_probs=53.6
Q ss_pred EEEEEECCChhHH-hhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc------cHHHHHHHHHHhCCeEEEEeCCC
Q psy2600 32 VIFMYDITSGQSF-HSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV------TLERHAKLAQSLHLHSFAVSART 104 (158)
Q Consensus 32 ~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~------~~~~~~~~~~~~~~~~~~~Sa~~ 104 (158)
+|+|+|+++.... ..+..|+.++....... .|+++++||+|+...... .......+.+..+..++..++..
T Consensus 109 il~V~d~~~~~~~~~~~~~~l~~~~~~~~~~--~~iilv~nK~Dl~~~~~~~~l~~~~~~~l~~l~~~~g~~~~~~~~~~ 186 (247)
T 3lxw_A 109 LLLVTQLGRFTAQDQQAVRQVRDMFGEDVLK--WMVIVFTRKEDLAGGSLHDYVSNTENRALRELVAECGGRVCAFDNRA 186 (247)
T ss_dssp EEEEEETTBCCHHHHHHHHHHHHHHCGGGGG--GEEEEEECGGGGTTCCHHHHHHHCCCHHHHHHHHHTTTCEEECCTTC
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhChhhhc--cEEEEEEchHhcCCCCHHHHHhhcccHHHHHHHHHcCCeEEEEeCCC
Confidence 7888888742111 11223333332111012 899999999999643211 01335667777777776666554
Q ss_pred -----CCCHHHHHHHHHHHHHHh
Q psy2600 105 -----GDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 105 -----~~~i~~lf~~l~~~~~~~ 122 (158)
+.+|.+|++.+.+.+.+.
T Consensus 187 ~~~~~~~~v~~Ll~~i~~~~~~~ 209 (247)
T 3lxw_A 187 TGREQEAQVEQLLGMVEGLVLEH 209 (247)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CccccHHHHHHHHHHHHHHHHHc
Confidence 478999999998887653
No 167
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=98.73 E-value=1.7e-08 Score=79.59 Aligned_cols=85 Identities=13% Similarity=0.035 Sum_probs=58.0
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCccc---cHHHHHHHHHHhC-----CeEEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVV---TLERHAKLAQSLH-----LHSFAV 100 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~ 100 (158)
|.+|+|+|+++.. +.+...|+..+.... +| +++|+||+|+...... ...+...+.+.++ .+++++
T Consensus 100 D~~ilVvda~~g~-~~qt~~~l~~~~~~~-----ip~iivviNK~Dl~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~i~~ 173 (405)
T 2c78_A 100 DGAILVVSAADGP-MPQTREHILLARQVG-----VPYIVVFMNKVDMVDDPELLDLVEMEVRDLLNQYEFPGDEVPVIRG 173 (405)
T ss_dssp SSEEEEEETTTCC-CHHHHHHHHHHHHTT-----CCCEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTTSCTTTSCEEEC
T ss_pred CEEEEEEECCCCC-cHHHHHHHHHHHHcC-----CCEEEEEEECccccCcHHHHHHHHHHHHHHHHHhcccccCCCEEEc
Confidence 4499999998754 334456666665543 77 8999999998742211 1224555666655 579999
Q ss_pred eCCCCCC------------------HHHHHHHHHHHHH
Q psy2600 101 SARTGDN------------------CWVNTRTPEINPL 120 (158)
Q Consensus 101 Sa~~~~~------------------i~~lf~~l~~~~~ 120 (158)
||++|.| +.++++.+.+.+.
T Consensus 174 SA~~g~~v~~~~~~~~~~~~~~~~~i~~Ll~~l~~~lp 211 (405)
T 2c78_A 174 SALLALEQMHRNPKTRRGENEWVDKIWELLDAIDEYIP 211 (405)
T ss_dssp CHHHHHHHHHHCTTCCTTSCHHHHHHHHHHHHHHHHSC
T ss_pred cHHHhhhhhccccccccCCCcccccHHHHHHHHHhhcC
Confidence 9999987 6677777766554
No 168
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.71 E-value=8.4e-09 Score=81.78 Aligned_cols=81 Identities=9% Similarity=0.087 Sum_probs=42.8
Q ss_pred EEEECCCh-hHHhhHH-HHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccH--HHHHHHHHHhCCeEEEEeCCCCCCHH
Q psy2600 34 FMYDITSG-QSFHSIP-TWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTL--ERHAKLAQSLHLHSFAVSARTGDNCW 109 (158)
Q Consensus 34 ~v~d~~~~-~s~~~~~-~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~~~~~~~~Sa~~~~~i~ 109 (158)
++|+.+.. .+++... .|+..+.. . +++|+|+||+|+...+.+.. ..+...+..+++.+|++|++++.++.
T Consensus 142 lL~ldePt~~~L~~~d~~~lk~L~~----~--v~iIlVinK~Dll~~~ev~~~k~~i~~~~~~~~i~~~~~sa~~~~~v~ 215 (418)
T 2qag_C 142 CLYFIAPSGHGLKPLDIEFMKRLHE----K--VNIIPLIAKADTLTPEECQQFKKQIMKEIQEHKIKIYEFPETDDEEEN 215 (418)
T ss_dssp EEEECCC-CCSCCHHHHHHHHHHTT----T--SEEEEEEESTTSSCHHHHHHHHHHHHHHHHHHTCCCCCCC--------
T ss_pred EEEEecCcccCCCHHHHHHHHHHhc----c--CcEEEEEEcccCccHHHHHHHHHHHHHHHHHcCCeEEeCCCCCCcCHH
Confidence 34443332 3555554 57766642 2 89999999999876544443 56677778889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 110 VNTRTPEINPL 120 (158)
Q Consensus 110 ~lf~~l~~~~~ 120 (158)
++|..+...++
T Consensus 216 ~~~~~l~~~iP 226 (418)
T 2qag_C 216 KLVKKIKDRLP 226 (418)
T ss_dssp ---------CC
T ss_pred HHHHHHHhhCC
Confidence 98888876554
No 169
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=98.71 E-value=2.8e-08 Score=79.04 Aligned_cols=79 Identities=18% Similarity=0.154 Sum_probs=51.9
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc-c-c--cHHHHHHHHHHhC-----CeEEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR-V-V--TLERHAKLAQSLH-----LHSFAV 100 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~-~-~--~~~~~~~~~~~~~-----~~~~~~ 100 (158)
+.+|+|+|+++.. +.+...|+..+..... .|+++|+||+|+.... . + ...+...+++.++ .+++++
T Consensus 129 D~~ilVvDa~~g~-~~qt~~~l~~~~~~~~----~~iIvviNK~Dl~~~~~~~~~~i~~~~~~~~~~~g~~~~~~~~i~v 203 (434)
T 1zun_B 129 DLAIILVDARYGV-QTQTRRHSYIASLLGI----KHIVVAINKMDLNGFDERVFESIKADYLKFAEGIAFKPTTMAFVPM 203 (434)
T ss_dssp SEEEEEEETTTCS-CHHHHHHHHHHHHTTC----CEEEEEEECTTTTTSCHHHHHHHHHHHHHHHHTTTCCCSEEEEEEC
T ss_pred CEEEEEEECCCCC-cHHHHHHHHHHHHcCC----CeEEEEEEcCcCCcccHHHHHHHHHHHHHHHHHhCCCccCceEEEE
Confidence 3489999988743 2333445554444331 4699999999996421 1 1 1234555666676 679999
Q ss_pred eCCCCCCHHHHHH
Q psy2600 101 SARTGDNCWVNTR 113 (158)
Q Consensus 101 Sa~~~~~i~~lf~ 113 (158)
||++|.|+.++|.
T Consensus 204 SA~~g~gi~~~~~ 216 (434)
T 1zun_B 204 SALKGDNVVNKSE 216 (434)
T ss_dssp CTTTCTTTSSCCT
T ss_pred eccCCCCcccccc
Confidence 9999999988544
No 170
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=98.69 E-value=2.4e-08 Score=79.52 Aligned_cols=81 Identities=15% Similarity=0.117 Sum_probs=53.6
Q ss_pred CCeEEEEEEECCChhHHhhHHHHH-------HHHhhhcCCCCCcEEEEEEeCCCCCCCc------cccHHHHHHHHHHhC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWV-------DLFHLNRKSSTPTYVALVANKGDMEHQR------VVTLERHAKLAQSLH 94 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~-------~~~~~~~~~~~~~piilv~nK~Dl~~~~------~~~~~~~~~~~~~~~ 94 (158)
..|++|+|+|+++ .+|+....|. ..+..... .++++|+||+|+.... ....++...+++.++
T Consensus 107 ~aD~~ilVvDa~~-gsfe~~~~~~~qt~~~~~~~~~~~~----~~iivviNK~Dl~~~~~~~~~~~~~~~~i~~~~~~~~ 181 (435)
T 1jny_A 107 QADAAILVVSAKK-GEYEAGMSVEGQTREHIILAKTMGL----DQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKFMRSYG 181 (435)
T ss_dssp CCSEEEEEEECST-THHHHHHSTTCHHHHHHHHHHHTTC----TTCEEEEECGGGSSSTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hcCEEEEEEECCC-CccccccccchHHHHHHHHHHHcCC----CeEEEEEEcccCCCccccHHHHHHHHHHHHHHHHHcC
Confidence 3467999999998 7777543332 22222221 4689999999986521 111344556666665
Q ss_pred -----CeEEEEeCCCCCCHHHHHH
Q psy2600 95 -----LHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 95 -----~~~~~~Sa~~~~~i~~lf~ 113 (158)
+.++++||++|.|+.+++.
T Consensus 182 ~~~~~~~~i~iSA~~g~~v~e~~~ 205 (435)
T 1jny_A 182 FNTNKVRFVPVVAPSGDNITHKSE 205 (435)
T ss_dssp CCCTTCEEEECBTTTTBTTTBCCS
T ss_pred CCcCCceEEEeecccCcccccccc
Confidence 5799999999999986554
No 171
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=98.68 E-value=5.8e-08 Score=69.10 Aligned_cols=58 Identities=9% Similarity=-0.055 Sum_probs=41.6
Q ss_pred cEEEEEEeCCCCCCCc--cccHHHHHHHHHHhC--CeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQR--VVTLERHAKLAQSLH--LHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~--~~~~~~~~~~~~~~~--~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+|+++|+||+|+.+.. ......+..++...+ +.++++||+++.|++++++.+.+.+.+
T Consensus 138 ~~~~~v~nK~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~~ 199 (210)
T 1pui_A 138 IAVLVLLTKADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFSE 199 (210)
T ss_dssp CCEEEEEECGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC-
T ss_pred CCeEEEEecccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHhh
Confidence 8899999999986421 111234445555544 467899999999999999999887543
No 172
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=98.66 E-value=8.9e-08 Score=83.83 Aligned_cols=86 Identities=13% Similarity=-0.021 Sum_probs=59.8
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCccc---cHHHHHHHHHHhC-----CeEEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVV---TLERHAKLAQSLH-----LHSFAV 100 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~---~~~~~~~~~~~~~-----~~~~~~ 100 (158)
|.+|+|+|+++.. +.+...|+..+.... +| +|+|+||+|+...... ...+...+.+.++ ++++++
T Consensus 384 D~aILVVDAtdGv-~~QTrEhL~ll~~lg-----IP~IIVVINKiDLv~d~e~le~i~eEi~elLk~~G~~~~~vp~Ipv 457 (1289)
T 3avx_A 384 DGAILVVAATDGP-MPQTREHILLGRQVG-----VPYIIVFLNKCDMVDDEELLELVEMEVRELLSQYDFPGDDTPIVRG 457 (1289)
T ss_dssp SEEEEEEETTTCS-CTTHHHHHHHHHHHT-----CSCEEEEEECCTTCCCHHHHHHHHHHHHHHHHHTTSCTTTCCEEEC
T ss_pred CEEEEEEcCCccC-cHHHHHHHHHHHHcC-----CCeEEEEEeecccccchhhHHHHHHHHHHHHHhccccccceeEEEE
Confidence 3399999998753 334455666665544 77 8999999999753221 1234556666665 579999
Q ss_pred eCCCC--------CCHHHHHHHHHHHHHH
Q psy2600 101 SARTG--------DNCWVNTRTPEINPLK 121 (158)
Q Consensus 101 Sa~~~--------~~i~~lf~~l~~~~~~ 121 (158)
||++| .||.++++.+.+.+..
T Consensus 458 SAktG~ng~~~w~eGI~eLleaL~~~Ip~ 486 (1289)
T 3avx_A 458 SALKALEGDAEWEAKILELAGFLDSYIPE 486 (1289)
T ss_dssp CSTTTTTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred EeccCCCCCccccccchhhHhHHhhhcCC
Confidence 99999 4688899888876643
No 173
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=98.64 E-value=2e-08 Score=83.14 Aligned_cols=76 Identities=12% Similarity=0.030 Sum_probs=45.3
Q ss_pred EEEEEECCChh---HHhhHHHHH---HHHhhhcCCCCCcEEEEEEeCCCCCCCcccc----HHHHHHHHHHhC-----Ce
Q psy2600 32 VIFMYDITSGQ---SFHSIPTWV---DLFHLNRKSSTPTYVALVANKGDMEHQRVVT----LERHAKLAQSLH-----LH 96 (158)
Q Consensus 32 ~i~v~d~~~~~---s~~~~~~~~---~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~----~~~~~~~~~~~~-----~~ 96 (158)
+|+|+|+++.. +|.....+. ..+.... . .++++|+||+|+....... ..+...+....+ ++
T Consensus 272 ~llVVDa~~g~~e~~~~~~~qt~e~l~~~~~lg--i--~~iIVVvNKiDl~~~~~~~~~ei~~~l~~~l~~~g~~~~~~~ 347 (611)
T 3izq_1 272 AILCVDCSTNAFESGFDLDGQTKEHMLLASSLG--I--HNLIIAMNKMDNVDWSQQRFEEIKSKLLPYLVDIGFFEDNIN 347 (611)
T ss_dssp EEEEEECSHHHHHTTCCTTSHHHHHHHHHHTTT--C--CEEEEEEECTTTTTTCHHHHHHHHHHHHHHHHHHTCCGGGCE
T ss_pred eEEEEECCCCcccccchhhhHHHHHHHHHHHcC--C--CeEEEEEecccccchhHHHHHHHHHHHHHHHHhhcccccCcc
Confidence 99999998632 221111222 2222222 1 5699999999987522211 122333444444 57
Q ss_pred EEEEeCCCCCCHHHH
Q psy2600 97 SFAVSARTGDNCWVN 111 (158)
Q Consensus 97 ~~~~Sa~~~~~i~~l 111 (158)
++++||++|.||.++
T Consensus 348 ~i~vSA~tG~gI~el 362 (611)
T 3izq_1 348 WVPISGFSGEGVYKI 362 (611)
T ss_dssp EEECCTTTCTTTSSC
T ss_pred EEeeecccCCCcccc
Confidence 999999999999876
No 174
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=98.64 E-value=7.1e-08 Score=76.16 Aligned_cols=86 Identities=12% Similarity=0.050 Sum_probs=58.2
Q ss_pred CCeEEEEEEECCC----hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcc--ccHHHHHHHHHH---hCCeEE
Q psy2600 28 CGKIVIFMYDITS----GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV--VTLERHAKLAQS---LHLHSF 98 (158)
Q Consensus 28 vgk~~i~v~d~~~----~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~--~~~~~~~~~~~~---~~~~~~ 98 (158)
..|.+|+|+|+++ +++++.+.. +..... .|+++|+||+|+..... ...++...+.+. .+.+++
T Consensus 106 ~~D~~ilVvda~~g~~~~qt~e~l~~----~~~~~~----~~iivviNK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~~~i 177 (410)
T 1kk1_A 106 LMDGAILVIAANEPCPRPQTREHLMA----LQIIGQ----KNIIIAQNKIELVDKEKALENYRQIKEFIEGTVAENAPII 177 (410)
T ss_dssp GCSEEEEEEETTSCSSCHHHHHHHHH----HHHHTC----CCEEEEEECGGGSCHHHHHHHHHHHHHHHTTSTTTTCCEE
T ss_pred hCCEEEEEEECCCCCCChhHHHHHHH----HHHcCC----CcEEEEEECccCCCHHHHHHHHHHHHHHHHhcCcCCCeEE
Confidence 3478999999985 344444432 232221 57999999999865321 112233344443 357899
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
++||++|.|+.++++.|.+.+..
T Consensus 178 ~vSA~~g~gi~~L~~~l~~~~~~ 200 (410)
T 1kk1_A 178 PISALHGANIDVLVKAIEDFIPT 200 (410)
T ss_dssp ECBTTTTBSHHHHHHHHHHHSCC
T ss_pred EeeCCCCCCHHHHHHHHHHhCCC
Confidence 99999999999999999987654
No 175
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=98.63 E-value=3.5e-08 Score=77.01 Aligned_cols=81 Identities=20% Similarity=0.169 Sum_probs=57.0
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH----HHHHhCC---eEEEEeC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK----LAQSLHL---HSFAVSA 102 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~----~~~~~~~---~~~~~Sa 102 (158)
+.+++|+|++++.+ .|..++.+.... .|+++|+||+|+.... ...+.... +++..|. .++.+||
T Consensus 73 ~lil~VvD~~d~~~-----s~~~~l~~~l~~---~piilV~NK~DLl~~~-~~~~~~~~~l~~~~~~~g~~~~~v~~iSA 143 (369)
T 3ec1_A 73 ALVVNIVDIFDFNG-----SFIPGLPRFAAD---NPILLVGNKADLLPRS-VKYPKLLRWMRRMAEELGLCPVDVCLVSA 143 (369)
T ss_dssp CEEEEEEETTCSGG-----GCCSSHHHHCTT---SCEEEEEECGGGSCTT-CCHHHHHHHHHHHHHTTTCCCSEEEECBT
T ss_pred cEEEEEEECCCCCC-----chhhHHHHHhCC---CCEEEEEEChhcCCCc-cCHHHHHHHHHHHHHHcCCCcccEEEEEC
Confidence 34899999998763 344444443322 8999999999986432 22233333 3555676 6899999
Q ss_pred CCCCCHHHHHHHHHHHH
Q psy2600 103 RTGDNCWVNTRTPEINP 119 (158)
Q Consensus 103 ~~~~~i~~lf~~l~~~~ 119 (158)
++|.|++++++.+.+..
T Consensus 144 ~~g~gi~~L~~~I~~~~ 160 (369)
T 3ec1_A 144 AKGIGMAKVMEAINRYR 160 (369)
T ss_dssp TTTBTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHhhc
Confidence 99999999999987654
No 176
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.61 E-value=3.2e-08 Score=76.79 Aligned_cols=57 Identities=21% Similarity=0.077 Sum_probs=40.6
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHH----------hCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQS----------LHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~----------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
.|.++|+||+|+...... ......+.+. ++.+++.+||++|.||+++++.+.+.+..
T Consensus 218 ~p~ivVlNK~Dl~~~~~~-~~~~~~l~~~l~~~~~~~~~~~~~vi~iSA~~g~Gi~~L~~~i~~~~~~ 284 (355)
T 3p32_A 218 LADIVVVNKADGEHHKEA-RLAARELSAAIRLIYPREALWRPPVLTMSAVEGRGLAELWDTVERHRQV 284 (355)
T ss_dssp GCSEEEEECCCGGGHHHH-HHHHHHHHHHHHHHSTTCCSCCCCEEEEBGGGTBSHHHHHHHHHHHHHH
T ss_pred cCCEEEEECCCCcChhHH-HHHHHHHHHHHhhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 688999999998542221 1112222222 14679999999999999999999988765
No 177
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=98.59 E-value=1.9e-07 Score=78.01 Aligned_cols=29 Identities=3% Similarity=-0.362 Sum_probs=25.7
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
++++++||++|.||.++|+.+++.++...
T Consensus 248 ~pv~~~SA~~~~Gv~~Ll~~i~~~lp~p~ 276 (665)
T 2dy1_A 248 YPVALASGEREIGVLPLLELILEALPSPT 276 (665)
T ss_dssp EEEEECBTTTTBSHHHHHHHHHHHSCCHH
T ss_pred eEEEEeecccCcCHHHHHHHHHHhCCCcc
Confidence 46899999999999999999999887654
No 178
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=98.58 E-value=8.8e-09 Score=83.35 Aligned_cols=83 Identities=18% Similarity=0.113 Sum_probs=51.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC--ccccHH--HHHHHHHHhC--CeEEEEeCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ--RVVTLE--RHAKLAQSLH--LHSFAVSAR 103 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~--~~~~~~--~~~~~~~~~~--~~~~~~Sa~ 103 (158)
|.+++|+|+++....+.. .++..+.... +|+++++||+|+... ..+..+ +...+++.++ .+++++||+
T Consensus 76 D~aILVVda~~g~~~qT~-e~l~~~~~~~-----vPiIVviNKiDl~~~~~~~v~~~l~~~~~~~~~~~~~~~~v~vSAk 149 (501)
T 1zo1_I 76 DIVVLVVAADDGVMPQTI-EAIQHAKAAQ-----VPVVVAVNKIDKPEADPDRVKNELSQYGILPEEWGGESQFVHVSAK 149 (501)
T ss_dssp SSEEEEEETTTBSCTTTH-HHHHHHHHTT-----CCEEEEEECSSSSTTCCCCTTCCCCCCCCCTTCCSSSCEEEECCTT
T ss_pred CEEEEEeecccCccHHHH-HHHHHHHhcC-----ceEEEEEEeccccccCHHHHHHHHHHhhhhHHHhCCCccEEEEeee
Confidence 449999999874222222 2233333333 899999999998642 111100 0001122233 689999999
Q ss_pred CCCCHHHHHHHHHHH
Q psy2600 104 TGDNCWVNTRTPEIN 118 (158)
Q Consensus 104 ~~~~i~~lf~~l~~~ 118 (158)
+|.|+.++|+.+...
T Consensus 150 tG~gI~eLle~I~~~ 164 (501)
T 1zo1_I 150 AGTGIDELLDAILLQ 164 (501)
T ss_dssp TCTTCTTHHHHTTTT
T ss_pred eccCcchhhhhhhhh
Confidence 999999999998754
No 179
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=98.55 E-value=9.2e-08 Score=68.72 Aligned_cols=84 Identities=13% Similarity=0.049 Sum_probs=56.3
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHh--CCeEEEEeCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSL--HLHSFAVSARTGD 106 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~ 106 (158)
...+++|+|+++... ....+.. ... .|+++|+||+|+........++.....+.. +.+++++||++|.
T Consensus 130 ~~~~i~vvd~~~~~~--~~~~~~~---~~~-----~~~iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~i~~~Sa~~g~ 199 (221)
T 2wsm_A 130 ENYRVVMVSVTEGDD--VVEKHPE---IFR-----VADLIVINKVALAEAVGADVEKMKADAKLINPRAKIIEMDLKTGK 199 (221)
T ss_dssp CSEEEEEEEGGGCTT--HHHHCHH---HHH-----TCSEEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECBTTTTB
T ss_pred cCcEEEEEeCCCcch--hhhhhhh---hhh-----cCCEEEEecccCCcchhhHHHHHHHHHHHhCCCCeEEEeecCCCC
Confidence 456889999876431 1111211 122 788999999998542222345555555554 4689999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy2600 107 NCWVNTRTPEINPLKY 122 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~ 122 (158)
|++++|+.+.+.+...
T Consensus 200 gi~~l~~~l~~~~~~~ 215 (221)
T 2wsm_A 200 GFEEWIDFLRGILNVH 215 (221)
T ss_dssp THHHHHHHHHHHHC--
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999999877553
No 180
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=98.48 E-value=1.1e-07 Score=76.12 Aligned_cols=79 Identities=13% Similarity=0.096 Sum_probs=50.5
Q ss_pred CCeEEEEEEECCCh---hHHh---hHHHHHHHHhhhcCCCCCc-EEEEEEeCCCCCC-Ccc---ccHHHHHHHHHHhC--
Q psy2600 28 CGKIVIFMYDITSG---QSFH---SIPTWVDLFHLNRKSSTPT-YVALVANKGDMEH-QRV---VTLERHAKLAQSLH-- 94 (158)
Q Consensus 28 vgk~~i~v~d~~~~---~s~~---~~~~~~~~~~~~~~~~~~~-piilv~nK~Dl~~-~~~---~~~~~~~~~~~~~~-- 94 (158)
..|.+|+|+|+++. .+|+ +...++..+.... + ++++|+||+|+.. ... ....+...+++.++
T Consensus 108 ~aD~~ilVvda~~g~~~~sf~~~~qt~~~~~~~~~~~-----v~~iivviNK~Dl~~~~~~~~~~i~~~~~~~l~~~g~~ 182 (458)
T 1f60_A 108 QADCAILIIAGGVGEFEAGISKDGQTREHALLAFTLG-----VRQLIVAVNKMDSVKWDESRFQEIVKETSNFIKKVGYN 182 (458)
T ss_dssp CCSEEEEEEECSHHHHHHHTCTTSHHHHHHHHHHHTT-----CCEEEEEEECGGGGTTCHHHHHHHHHHHHHHHHHHTCC
T ss_pred hCCEEEEEEeCCcCccccccCcchhHHHHHHHHHHcC-----CCeEEEEEEccccccCCHHHHHHHHHHHHHHHHHcCCC
Confidence 45679999999875 3443 2333333333332 5 4999999999863 111 11233455556665
Q ss_pred ---CeEEEEeCCCCCCHHHH
Q psy2600 95 ---LHSFAVSARTGDNCWVN 111 (158)
Q Consensus 95 ---~~~~~~Sa~~~~~i~~l 111 (158)
++++++||++|.|+.++
T Consensus 183 ~~~~~~i~vSA~~g~nv~~~ 202 (458)
T 1f60_A 183 PKTVPFVPISGWNGDNMIEA 202 (458)
T ss_dssp GGGCCEEECCTTTCBTTTBC
T ss_pred ccCceEEEeecccCcCcccc
Confidence 57999999999998754
No 181
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=98.47 E-value=1.4e-06 Score=71.89 Aligned_cols=86 Identities=21% Similarity=0.188 Sum_probs=57.4
Q ss_pred CCeEEEEEEECCC---hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCcccc-------------H---HHH--
Q psy2600 28 CGKIVIFMYDITS---GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT-------------L---ERH-- 86 (158)
Q Consensus 28 vgk~~i~v~d~~~---~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~-------------~---~~~-- 86 (158)
..|.+|+|+|+++ +++++.+.. +.... +|+++++||+|+....... . ...
T Consensus 93 ~aD~aILVvDa~~Gv~~qT~e~l~~----l~~~~-----vPiIVViNKiDl~~~~~~~~~~~~~e~sa~~~~~v~~~~~e 163 (594)
T 1g7s_A 93 LADLAILIVDINEGFKPQTQEALNI----LRMYR-----TPFVVAANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDT 163 (594)
T ss_dssp SCSEEEEEEETTTCCCHHHHHHHHH----HHHTT-----CCEEEEEECGGGSTTCCCCTTCCHHHHHTTSCHHHHHHHHH
T ss_pred hCCEEEEEEECCCCccHhHHHHHHH----HHHcC-----CeEEEEecccccccccccccCCchHHHHHHhHHHHHHHHHH
Confidence 4688999999998 667665432 33333 8999999999986321100 0 000
Q ss_pred --HHH---HHHhC---------------CeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 87 --AKL---AQSLH---------------LHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 87 --~~~---~~~~~---------------~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
..+ ....+ .+++.+||++|.||.++++++...+...
T Consensus 164 ~i~ei~~~L~e~gl~~e~~~~l~~~~~~vpvv~vSA~tG~GI~eLl~~I~~~~~~~ 219 (594)
T 1g7s_A 164 KVYELVGKLHEEGFESERFDRVTDFASQVSIIPISAITGEGIPELLTMLMGLAQQY 219 (594)
T ss_dssp HHHHHHHHHHHTTCEEEEGGGCSCTTTEEEEEECCTTTCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHhccCcceEEEEeccCCCCchhHHHHHHhhcccc
Confidence 011 11112 3689999999999999999999877643
No 182
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.47 E-value=2e-07 Score=70.19 Aligned_cols=82 Identities=15% Similarity=0.079 Sum_probs=59.1
Q ss_pred CeEEEEEEECCChhHHhh--HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHS--IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
.|.+++|+|+.++.++.. +..|+ . + +|.++|+||+|+..... .+....+.+..+.+++.+||.++.
T Consensus 24 aDvVl~VvDAr~p~~~~~~~l~~~l-------~-~--kp~ilVlNK~DL~~~~~--~~~~~~~~~~~g~~~i~iSA~~~~ 91 (282)
T 1puj_A 24 IDIVYELVDARIPMSSRNPMIEDIL-------K-N--KPRIMLLNKADKADAAV--TQQWKEHFENQGIRSLSINSVNGQ 91 (282)
T ss_dssp CSEEEEEEETTSTTTTSCHHHHHHC-------S-S--SCEEEEEECGGGSCHHH--HHHHHHHHHTTTCCEEECCTTTCT
T ss_pred CCEEEEEEeCCCCCccCCHHHHHHH-------C-C--CCEEEEEECcccCCHHH--HHHHHHHHHhcCCcEEEEECCCcc
Confidence 477999999999877653 33333 1 1 89999999999964211 112233334457889999999999
Q ss_pred CHHHHHHHHHHHHHHh
Q psy2600 107 NCWVNTRTPEINPLKY 122 (158)
Q Consensus 107 ~i~~lf~~l~~~~~~~ 122 (158)
|+.++++.+.+.+...
T Consensus 92 gi~~L~~~i~~~l~~~ 107 (282)
T 1puj_A 92 GLNQIVPASKEILQEK 107 (282)
T ss_dssp TGGGHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHH
Confidence 9999999888877643
No 183
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=98.41 E-value=1.2e-07 Score=78.21 Aligned_cols=83 Identities=13% Similarity=0.085 Sum_probs=49.1
Q ss_pred EEEEEECCChh---HH---hhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCC-cccc---HHHHHHHH-HHhCC----
Q psy2600 32 VIFMYDITSGQ---SF---HSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQ-RVVT---LERHAKLA-QSLHL---- 95 (158)
Q Consensus 32 ~i~v~d~~~~~---s~---~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~-~~~~---~~~~~~~~-~~~~~---- 95 (158)
+|+|+|+++.. ++ ......+..+.... +| +|+|+||+|+... .... ..+...+. +..++
T Consensus 282 alLVVDa~~g~~e~gi~~~~qt~e~l~~~~~lg-----ip~iIvviNKiDl~~~~~~~~~~i~~el~~~l~~~~g~~~~~ 356 (592)
T 3mca_A 282 AVLVVDSSQNNFERGFLENGQTREHAYLLRALG-----ISEIVVSVNKLDLMSWSEDRFQEIKNIVSDFLIKMVGFKTSN 356 (592)
T ss_dssp CCSEEEEEECCSSTTSCSCSSHHHHHHHHHHSS-----CCCEEEEEECGGGGTTCHHHHHHHHHHHHHHHTTTSCCCGGG
T ss_pred EEEEEECCCCccccccccchHHHHHHHHHHHcC-----CCeEEEEEeccccccccHHHHHHHHHHHHHHHHHhhCCCccc
Confidence 78899987532 22 12222333333333 55 9999999998641 1111 11222333 33344
Q ss_pred -eEEEEeCCCCCCHH--------------HHHHHHHHHH
Q psy2600 96 -HSFAVSARTGDNCW--------------VNTRTPEINP 119 (158)
Q Consensus 96 -~~~~~Sa~~~~~i~--------------~lf~~l~~~~ 119 (158)
+++++||++|.||. .|++.|...+
T Consensus 357 ~~ii~iSA~~G~gI~e~~~~~~~~w~~g~~Lle~l~~~~ 395 (592)
T 3mca_A 357 VHFVPISAISGTNLIQKDSSDLYKWYKGPTLLSALDQLV 395 (592)
T ss_dssp EEEEEECSSSCSSSCSCCCCGGGGTCCSCCHHHHHHTSC
T ss_pred eEEEEEecccCcccccccccccccccchHHHHHHHHhhc
Confidence 69999999999998 6777776544
No 184
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=98.41 E-value=6.9e-07 Score=64.52 Aligned_cols=89 Identities=6% Similarity=-0.156 Sum_probs=57.6
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhh-cCC--CCCcEEEEEEeCC-CCCCCccccHHHHHHHHH----HhCCeEEEEe
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLN-RKS--STPTYVALVANKG-DMEHQRVVTLERHAKLAQ----SLHLHSFAVS 101 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~-~~~--~~~~piilv~nK~-Dl~~~~~~~~~~~~~~~~----~~~~~~~~~S 101 (158)
+++|||.|.+|.+.++ ....+.++... ..+ ....|++|.+||. |++. ..+..+...... ...+.++.||
T Consensus 127 dglIfVVDSsD~~R~e-ak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~--Ams~~EI~e~L~L~~l~R~W~Iq~cs 203 (227)
T 3l82_B 127 DGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQDTE 203 (227)
T ss_dssp SEEEEEEECBTTCCCC-HHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEEEE
T ss_pred CEEEEEeccccHhHHH-HHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC--CCCHHHHHHHcCCcCCCCCEEEEEeE
Confidence 3499999999986654 43333333211 111 1238999999995 7753 333333332211 1345689999
Q ss_pred CCCCCCHHHHHHHHHHHHHH
Q psy2600 102 ARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 102 a~~~~~i~~lf~~l~~~~~~ 121 (158)
|++|+|+.+.++||.+.+..
T Consensus 204 A~TGeGL~EGLdWL~~~l~~ 223 (227)
T 3l82_B 204 AETLTGFLNGIEWILEEVES 223 (227)
T ss_dssp TTTCTTHHHHHHHHTTTTTT
T ss_pred CCCCcCHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 185
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=98.40 E-value=1.7e-06 Score=72.61 Aligned_cols=40 Identities=23% Similarity=0.243 Sum_probs=31.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
+|+|+|+++..++.....|.. +...+ +|+++|+||+|+..
T Consensus 104 ~ilVvDa~~g~~~~t~~~~~~-~~~~~-----~p~ivviNKiD~~~ 143 (691)
T 1dar_A 104 AIVVFDSSQGVEPQSETVWRQ-AEKYK-----VPRIAFANKMDKTG 143 (691)
T ss_dssp EEEEEETTTCSCHHHHHHHHH-HHHTT-----CCEEEEEECTTSTT
T ss_pred EEEEEECCCCcchhhHHHHHH-HHHcC-----CCEEEEEECCCccc
Confidence 999999998777777666654 33333 89999999999864
No 186
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=98.37 E-value=1.6e-07 Score=75.46 Aligned_cols=84 Identities=19% Similarity=0.177 Sum_probs=53.4
Q ss_pred CCCeEEEEEEECCCh---hHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCc---c---ccHHHHHHHHHHh-C-
Q psy2600 27 SCGKIVIFMYDITSG---QSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQR---V---VTLERHAKLAQSL-H- 94 (158)
Q Consensus 27 ~vgk~~i~v~d~~~~---~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~---~---~~~~~~~~~~~~~-~- 94 (158)
...|.+|+|+|+++. .+|+...+|.+.+......+ +| +++|+||+|+.... . ....+...+.+.. +
T Consensus 143 ~~aD~~ilVvDa~~g~~e~sf~~~~qt~e~l~~~~~~~--vp~iivviNK~Dl~~~~~~~~~~~~i~~e~~~~l~~~~g~ 220 (467)
T 1r5b_A 143 SQADIGVLVISARRGEFEAGFERGGQTREHAVLARTQG--INHLVVVINKMDEPSVQWSEERYKECVDKLSMFLRRVAGY 220 (467)
T ss_dssp TSCSEEEEEEECSTTHHHHTTSTTCCHHHHHHHHHHTT--CSSEEEEEECTTSTTCSSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred ccCCEEEEEEeCCcCccccccCCCCcHHHHHHHHHHcC--CCEEEEEEECccCCCccccHHHHHHHHHHHHHHHHHhcCC
Confidence 346889999999985 45553333333333111111 76 99999999995311 1 1122455566555 3
Q ss_pred -----CeEEEEeCCCCCCHHHHH
Q psy2600 95 -----LHSFAVSARTGDNCWVNT 112 (158)
Q Consensus 95 -----~~~~~~Sa~~~~~i~~lf 112 (158)
++++++||++|.|+.++|
T Consensus 221 ~~~~~~~~i~vSA~~g~~i~~l~ 243 (467)
T 1r5b_A 221 NSKTDVKYMPVSAYTGQNVKDRV 243 (467)
T ss_dssp CHHHHEEEEECBTTTTBTTSSCC
T ss_pred CccCCceEEeccccccccccccc
Confidence 459999999999998766
No 187
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=98.35 E-value=3.7e-07 Score=65.73 Aligned_cols=55 Identities=15% Similarity=0.045 Sum_probs=43.4
Q ss_pred EEEEeCCCCCCCccccHHHHHHHHHHh--CCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 67 ALVANKGDMEHQRVVTLERHAKLAQSL--HLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 67 ilv~nK~Dl~~~~~~~~~~~~~~~~~~--~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
++|+||+|+...+....++...+++.+ +..++++||++|.|++++|+.+.+.+..
T Consensus 168 iiv~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~g~gv~~l~~~l~~~~~~ 224 (226)
T 2hf9_A 168 LIVINKIDLADAVGADIKKMENDAKRINPDAEVVLLSLKTMEGFDKVLEFIEKSVKE 224 (226)
T ss_dssp EEEEECGGGHHHHTCCHHHHHHHHHHHCTTSEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred EEEEeccccCchhHHHHHHHHHHHHHhCCCCeEEEEEecCCCCHHHHHHHHHHHHHh
Confidence 999999998643323455666666654 5789999999999999999999887653
No 188
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=98.32 E-value=1.4e-07 Score=70.89 Aligned_cols=83 Identities=8% Similarity=-0.111 Sum_probs=53.2
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH--hC-CeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS--LH-LHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~--~~-~~~~~~Sa~~~~~i 108 (158)
+++|+|.++..+..+...|+..+.... .|+++|+||+|+................. .+ ..++++||++|.|+
T Consensus 166 il~v~d~~~~~~~~~~~~~~~~~~~~~-----~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~SA~~~~gi 240 (299)
T 2aka_B 166 ILAVSPANSDLANSDALKIAKEVDPQG-----QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGK 240 (299)
T ss_dssp EEEEEESSSCGGGCHHHHHHHHHCTTC-----SSEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCCBCTTSC
T ss_pred EEEEecCCcchhhhHHHHHHHHhCCCC-----CeEEEEEEccccCCCCchHHHHHhCCcCcCCCCcEEEECCChhhcccc
Confidence 447999987555444445665554322 89999999999865433112221110001 12 35789999999999
Q ss_pred HHHHHHHHHHH
Q psy2600 109 WVNTRTPEINP 119 (158)
Q Consensus 109 ~~lf~~l~~~~ 119 (158)
.++|+.+.+..
T Consensus 241 ~~l~~~l~~~~ 251 (299)
T 2aka_B 241 KDITAALAAER 251 (299)
T ss_dssp BCHHHHHHHHH
T ss_pred ccHHHHHHHHH
Confidence 99999998744
No 189
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.28 E-value=5e-07 Score=68.57 Aligned_cols=57 Identities=7% Similarity=-0.040 Sum_probs=38.9
Q ss_pred cEEEEEEeCCCCCCCccc--cHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVV--TLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+++++|+||+|+...+++ ..+++..+++.+++.+|++||+++ |++++|..+.+.+..
T Consensus 156 ~~iilV~~K~Dl~~~~e~~~~~~~~~~~~~~~~~~~~e~Sa~~~-~v~e~f~~l~~~i~~ 214 (301)
T 2qnr_A 156 VNIVPVIAKADTLTLKERERLKKRILDEIEEHNIKIYHLPDAES-DEDEDFKEQTRLLKA 214 (301)
T ss_dssp SCEEEEECCGGGSCHHHHHHHHHHHHHHHHHTTCCCCCCC----------CHHHHHHHHT
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHHHHHHHHHcCCeEEecCCccc-cccHHHHHHHHHhhc
Confidence 799999999998754332 235677788889999999999999 999999999988864
No 190
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=98.20 E-value=1.2e-05 Score=65.57 Aligned_cols=27 Identities=7% Similarity=-0.390 Sum_probs=23.8
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
++|..||.+|.||.+|++.+.+.++..
T Consensus 253 Pv~~gSA~~~~Gv~~LLd~i~~~~P~P 279 (529)
T 2h5e_A 253 PVFFGTALGNFGVDHMLDGLVEWAPAP 279 (529)
T ss_dssp EEEECBTTTTBSHHHHHHHHHHHSCSS
T ss_pred EEEeeecccCCCHHHHHHHHHHhCCCC
Confidence 578899999999999999999987654
No 191
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=98.18 E-value=2.5e-06 Score=71.65 Aligned_cols=88 Identities=11% Similarity=0.073 Sum_probs=59.9
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHH----------HHHH-----HHHHh
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLE----------RHAK-----LAQSL 93 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~----------~~~~-----~~~~~ 93 (158)
.|.+|+|+|+++..++.+...|...+.... .|+++|+||+|+.....++.+ .... +....
T Consensus 201 aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~-----~~iiiVlNK~Dl~~~~~~~~ee~e~l~~~~~~i~~~~~~~l~~~~ 275 (695)
T 2j69_A 201 CHAILFVMRASQPCTLGERRYLENYIKGRG-----LTVFFLVNAWDQVRESLIDPDDVEELQASENRLRQVFNANLAEYC 275 (695)
T ss_dssp SSEEEEEEETTSTTCHHHHHHHHHHTTTSC-----CCEEEEEECGGGGGGGCSSTTCHHHHHHHHHHHHHHHHHHHGGGG
T ss_pred CCEEEEEEeCCCccchhHHHHHHHHHHhhC-----CCEEEEEECcccccccccChhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467999999998877777666665554332 789999999998643211110 1111 11111
Q ss_pred --------CCeEEEEeCC--------------CCCCHHHHHHHHHHHHHH
Q psy2600 94 --------HLHSFAVSAR--------------TGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 94 --------~~~~~~~Sa~--------------~~~~i~~lf~~l~~~~~~ 121 (158)
+..++.+||+ ++.|+.+++..+.+.+..
T Consensus 276 ~~~g~~~~~~~v~~vSAk~al~~~~~~~~~~~~~~Gi~~L~~~L~~~l~~ 325 (695)
T 2j69_A 276 TVEGQNIYDERVFELSSIQALRRRLKNPQADLDGTGFPKFMDSLNTFLTR 325 (695)
T ss_dssp BSSSCBCGGGTEEECCHHHHHHHHHHCTTCCCTTSSHHHHHHHHHHHHHH
T ss_pred cccccccCCCcEEEEeChHHHHhhccCchhhhhccCHHHHHHHHHHHHHH
Confidence 1358999999 999999999999887754
No 192
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=98.18 E-value=1.2e-05 Score=67.45 Aligned_cols=42 Identities=17% Similarity=0.096 Sum_probs=31.8
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
|.+|+|+|+++..++.....|.. +.... +|+++|+||+|+..
T Consensus 100 D~~llVvDa~~g~~~~~~~~~~~-~~~~~-----~p~ilviNK~Dl~~ 141 (693)
T 2xex_A 100 DGAVTVLDAQSGVEPQTETVWRQ-ATTYG-----VPRIVFVNKMDKLG 141 (693)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHH-HHHTT-----CCEEEEEECTTSTT
T ss_pred CEEEEEECCCCCCcHHHHHHHHH-HHHcC-----CCEEEEEECCCccc
Confidence 45999999998777766655543 44433 89999999999864
No 193
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=98.12 E-value=6e-06 Score=61.14 Aligned_cols=45 Identities=7% Similarity=0.003 Sum_probs=30.0
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
+++|++++... +... ..|+..+..........|+++|+||+|+..
T Consensus 120 il~V~~~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 120 LLYVDRLDVYA-VDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EEEEEESSCSC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred EEEEEcCCCCC-CCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 88888887654 5444 467777775432211148999999999853
No 194
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=98.11 E-value=6.4e-06 Score=61.22 Aligned_cols=47 Identities=0% Similarity=-0.024 Sum_probs=30.6
Q ss_pred EEEEEECCChhHHhhH-HHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCc
Q psy2600 32 VIFMYDITSGQSFHSI-PTWVDLFHLNRKSSTPTYVALVANKGDMEHQR 79 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~-~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 79 (158)
+++|+|++.. ++... ..|+..+..........|+++|+||+|+....
T Consensus 123 il~v~~~d~~-~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~~ 170 (270)
T 1h65_A 123 LLYVDRLDAY-RVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPPD 170 (270)
T ss_dssp EEEEEESSCC-CCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCGG
T ss_pred EEEEEeCCCC-cCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCcC
Confidence 8899888653 35443 47777776442211115899999999986433
No 195
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.09 E-value=3.7e-06 Score=63.49 Aligned_cols=87 Identities=6% Similarity=-0.169 Sum_probs=56.8
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHH---h-hhc-CCCCCcEEEEEEeC-CCCCCCccccHHHHHHHHH----HhCCeEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLF---H-LNR-KSSTPTYVALVANK-GDMEHQRVVTLERHAKLAQ----SLHLHSFA 99 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~---~-~~~-~~~~~~piilv~nK-~Dl~~~~~~~~~~~~~~~~----~~~~~~~~ 99 (158)
+++|||.|.+|.+.++ ....+.++ . +.. ..+ .|++|.+|| -|++. ..+..+...... ...+.++.
T Consensus 212 dglIfVVDSsDreRle-ak~EL~eL~~mL~e~~~l~~--apLLVfANKkQDlp~--Ams~~EI~e~L~L~~l~r~W~Iq~ 286 (312)
T 3l2o_B 212 DGFIYVANAEAHKRHE-WQDEFSHIMAMTDPAFGSSG--RPLLVLSCISQGDVK--RMPCFYLAHELHLNLLNHPWLVQD 286 (312)
T ss_dssp SEEEECCBCBTTCCCC-HHHHHHHHHHHHCHHHHCTT--CCEEEEEEESSTTSC--BCCHHHHHHHTTGGGGCSCEEEEE
T ss_pred CEEEEEecCCcHhHHH-HHHHHHHHHHHhcchhhcCC--CeEEEEeCCcccccC--CCCHHHHHHHcCCccCCCcEEEEe
Confidence 4599999999987665 33322222 1 111 122 899999997 58854 233333322111 12356899
Q ss_pred EeCCCCCCHHHHHHHHHHHHHH
Q psy2600 100 VSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 100 ~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
|||.+|+|+.+.++++.+.+..
T Consensus 287 csA~tGeGL~EGldWL~~~l~~ 308 (312)
T 3l2o_B 287 TEAETLTGFLNGIEWILEEVES 308 (312)
T ss_dssp EETTTCTTHHHHHHHHHHHSCC
T ss_pred cccCCCcCHHHHHHHHHHHHHh
Confidence 9999999999999999988754
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.03 E-value=1.8e-05 Score=58.11 Aligned_cols=56 Identities=18% Similarity=0.087 Sum_probs=39.9
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHH----------------------------HHHHhC--CeEEEEeCCCCCCHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAK----------------------------LAQSLH--LHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~----------------------------~~~~~~--~~~~~~Sa~~~~~i~~lf~ 113 (158)
.|+++|+||+|+.....+ .+... +++.++ ..++++||+++.|++++++
T Consensus 172 ~p~~iv~NK~D~~~~~~~--~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SA~~~~gi~~l~~ 249 (262)
T 1yrb_A 172 ATTIPALNKVDLLSEEEK--ERHRKYFEDIDYLTARLKLDPSMQGLMAYKMCSMMTEVLPPVRVLYLSAKTREGFEDLET 249 (262)
T ss_dssp SCEEEEECCGGGCCHHHH--HHHHHHHHCHHHHHHHHHHCCSHHHHHHHHHHHHHHHHSCCCCCEECCTTTCTTHHHHHH
T ss_pred CCeEEEEecccccccccH--HHHHHHHhChHHHHHHHhccccccchhHhHHHHHHHHhcCcccceEEEecCcccHHHHHH
Confidence 899999999998643211 11111 123433 4789999999999999999
Q ss_pred HHHHHHHH
Q psy2600 114 TPEINPLK 121 (158)
Q Consensus 114 ~l~~~~~~ 121 (158)
.+.+.+..
T Consensus 250 ~i~~~~~~ 257 (262)
T 1yrb_A 250 LAYEHYCT 257 (262)
T ss_dssp HHHHHHHH
T ss_pred HHHHHhcc
Confidence 99887653
No 197
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=97.98 E-value=4.3e-06 Score=63.66 Aligned_cols=80 Identities=11% Similarity=0.110 Sum_probs=52.4
Q ss_pred eEEEEEEECCChh-HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccc--cHHHHHHHHHHhCCeEEEEeCCCCC
Q psy2600 30 KIVIFMYDITSGQ-SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV--TLERHAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 30 k~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~--~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
|.+++|+|+.++. +...+..++....... +|.++|.||+||...... .........+..|.+++.+||.++.
T Consensus 88 D~v~~V~~~~~p~~~~~~i~r~L~~~~~~~-----~~~vivlnK~DL~~~~~~~~~~~~~~~~y~~~g~~v~~~sa~~~~ 162 (307)
T 1t9h_A 88 DQAVLVFSAVQPSFSTALLDRFLVLVEAND-----IQPIICITKMDLIEDQDTEDTIQAYAEDYRNIGYDVYLTSSKDQD 162 (307)
T ss_dssp CEEEEEEESTTTTCCHHHHHHHHHHHHTTT-----CEEEEEEECGGGCCCHHHHHHHHHHHHHHHHHTCCEEECCHHHHT
T ss_pred CEEEEEEeCCCCCCCHHHHHHHHHHHHHCC-----CCEEEEEECCccCchhhhHHHHHHHHHHHHhCCCeEEEEecCCCC
Confidence 4499999998654 3334445554444333 888999999999754210 0122333444568899999999998
Q ss_pred CHHHHHHH
Q psy2600 107 NCWVNTRT 114 (158)
Q Consensus 107 ~i~~lf~~ 114 (158)
|+++|+..
T Consensus 163 g~~~L~~~ 170 (307)
T 1t9h_A 163 SLADIIPH 170 (307)
T ss_dssp TCTTTGGG
T ss_pred CHHHHHhh
Confidence 88877653
No 198
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.95 E-value=2.3e-06 Score=63.72 Aligned_cols=75 Identities=7% Similarity=0.035 Sum_probs=53.3
Q ss_pred CeEEEEEEECCChhHHhh--HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCC
Q psy2600 29 GKIVIFMYDITSGQSFHS--IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGD 106 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~--~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~ 106 (158)
.|.+++|+|+.++.+... +. |+ + +|.++|.||+|+..... .+....+.+..|.++ .+||.++.
T Consensus 22 ~D~vl~VvDar~P~~~~~~~l~-ll---------~--k~~iivlNK~DL~~~~~--~~~~~~~~~~~g~~v-~iSa~~~~ 86 (262)
T 3cnl_A 22 VNTVVEVRDARAPFATSAYGVD-FS---------R--KETIILLNKVDIADEKT--TKKWVEFFKKQGKRV-ITTHKGEP 86 (262)
T ss_dssp CSEEEEEEETTSTTTTSCTTSC-CT---------T--SEEEEEEECGGGSCHHH--HHHHHHHHHHTTCCE-EECCTTSC
T ss_pred CCEEEEEeeCCCCCcCcChHHH-hc---------C--CCcEEEEECccCCCHHH--HHHHHHHHHHcCCeE-EEECCCCc
Confidence 477999999998876653 22 22 1 89999999999964211 122233444557788 99999999
Q ss_pred CHHHHHHHHHHH
Q psy2600 107 NCWVNTRTPEIN 118 (158)
Q Consensus 107 ~i~~lf~~l~~~ 118 (158)
|+++++..+...
T Consensus 87 gi~~L~~~l~~~ 98 (262)
T 3cnl_A 87 RKVLLKKLSFDR 98 (262)
T ss_dssp HHHHHHHHCCCT
T ss_pred CHHHHHHHHHHh
Confidence 999998877554
No 199
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=97.90 E-value=1.6e-05 Score=61.24 Aligned_cols=84 Identities=14% Similarity=-0.018 Sum_probs=49.8
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccH--HHHHHHHHHh-------CCeEE
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTL--ERHAKLAQSL-------HLHSF 98 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~--~~~~~~~~~~-------~~~~~ 98 (158)
..|.+++|+|++....+..+... ... .|.++|+||+|+........ .+........ ...++
T Consensus 169 ~aD~vl~Vvd~~~~~~~~~l~~~-----~~~-----~p~ivv~NK~Dl~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~vi 238 (341)
T 2p67_A 169 MVDCFISLQIAGGGDDLQGIKKG-----LME-----VADLIVINKDDGDNHTNVAIARHMYESALHILRRKYDEWQPRVL 238 (341)
T ss_dssp TCSEEEEEECC------CCCCHH-----HHH-----HCSEEEECCCCTTCHHHHHHHHHHHHHHHHHSCCSBTTBCCEEE
T ss_pred hCCEEEEEEeCCccHHHHHHHHh-----hhc-----ccCEEEEECCCCCChHHHHHHHHHHHHHHHhccccccCCCCcEE
Confidence 45779999998765443322111 111 77899999999864221110 0111111111 34689
Q ss_pred EEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 99 AVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 99 ~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
.+||++|.|++++++.+.+.+..
T Consensus 239 ~iSA~~g~gi~~L~~~l~~~~~~ 261 (341)
T 2p67_A 239 TCSALEKRGIDEIWHAIIDFKTA 261 (341)
T ss_dssp ECBGGGTBSHHHHHHHHHHHHHH
T ss_pred EeeCCCCCCHHHHHHHHHHHHHH
Confidence 99999999999999999987653
No 200
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=97.86 E-value=3.6e-06 Score=65.18 Aligned_cols=87 Identities=11% Similarity=-0.020 Sum_probs=55.7
Q ss_pred EEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHH
Q psy2600 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWV 110 (158)
Q Consensus 31 ~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~ 110 (158)
++|+|+|.++..... ..|+..+......+ .|+++|+||+|+.............+...++..|+.+|++.+.++++
T Consensus 175 ~iilvv~~~~~~~~~--~~~~~l~~~~~~~~--~~~i~V~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~s~~~i~~ 250 (360)
T 3t34_A 175 CIILAISPANQDLAT--SDAIKISREVDPSG--DRTFGVLTKIDLMDKGTDAVEILEGRSFKLKYPWVGVVNRSQADINK 250 (360)
T ss_dssp EEEEEEEETTSCGGG--CHHHHHHHHSCTTC--TTEEEEEECGGGCCTTCCSHHHHTTSSSCCSSCCEEECCCCHHHHHT
T ss_pred eEEEEeecccCCcCC--HHHHHHHHHhcccC--CCEEEEEeCCccCCCcccHHHHHcCccccccCCeEEEEECChHHhcc
Confidence 488888876544332 23444444444333 78999999999875443333333333444578899999999998887
Q ss_pred HHHHHHHHHHH
Q psy2600 111 NTRTPEINPLK 121 (158)
Q Consensus 111 lf~~l~~~~~~ 121 (158)
.+..+.....+
T Consensus 251 ~~~~~~~~~~e 261 (360)
T 3t34_A 251 NVDMIAARKRE 261 (360)
T ss_dssp TCCHHHHHHHH
T ss_pred CCCHHHHHHHH
Confidence 77665544433
No 201
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=97.81 E-value=9.6e-05 Score=57.38 Aligned_cols=77 Identities=14% Similarity=0.094 Sum_probs=49.4
Q ss_pred eEEEEEEECCChh-HHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHH---HHHhCCeEEEEeCCCC
Q psy2600 30 KIVIFMYDITSGQ-SFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL---AQSLHLHSFAVSARTG 105 (158)
Q Consensus 30 k~~i~v~d~~~~~-s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~---~~~~~~~~~~~Sa~~~ 105 (158)
|.+++|... ++. +...+..|+....... +|.++|.||+||..... .+....+ .+..|++++.+||.++
T Consensus 132 D~v~iv~a~-~P~~~~~~i~r~L~~a~~~~-----~~~iivlNK~DL~~~~~--~~~~~~~~~~y~~~G~~v~~~Sa~~~ 203 (358)
T 2rcn_A 132 DQIVIVSAI-LPELSLNIIDRYLVGCETLQ-----VEPLIVLNKIDLLDDEG--MDFVNEQMDIYRNIGYRVLMVSSHTQ 203 (358)
T ss_dssp CEEEEEEES-TTTCCHHHHHHHHHHHHHHT-----CEEEEEEECGGGCCHHH--HHHHHHHHHHHHTTTCCEEECBTTTT
T ss_pred CEEEEEEeC-CCCCCHHHHHHHHHHHHhcC-----CCEEEEEECccCCCchh--HHHHHHHHHHHHhCCCcEEEEecCCC
Confidence 556777554 443 3334455555544444 78899999999964321 1112233 3346788999999999
Q ss_pred CCHHHHHHH
Q psy2600 106 DNCWVNTRT 114 (158)
Q Consensus 106 ~~i~~lf~~ 114 (158)
.|++++...
T Consensus 204 ~gl~~L~~~ 212 (358)
T 2rcn_A 204 DGLKPLEEA 212 (358)
T ss_dssp BTHHHHHHH
T ss_pred cCHHHHHHh
Confidence 999988764
No 202
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=97.79 E-value=3.4e-05 Score=58.19 Aligned_cols=87 Identities=10% Similarity=-0.012 Sum_probs=50.6
Q ss_pred eEEEEEEECCChhHH-hhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCC----
Q psy2600 30 KIVIFMYDITSGQSF-HSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSART---- 104 (158)
Q Consensus 30 k~~i~v~d~~~~~s~-~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---- 104 (158)
+++++|+|.++.... .+...+...+... + .|+++|+||+|+........+........++..|+.+|+..
T Consensus 169 d~iilvvd~~~~~~~~~~~~~i~~~~~~~---~--~~~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~~~~v~~~sa~~~ 243 (315)
T 1jwy_B 169 NAIIVAVTPANTDLANSDALQLAKEVDPE---G--KRTIGVITKLDLMDKGTDAMEVLTGRVIPLTLGFIGVINRSQEDI 243 (315)
T ss_dssp TEEEEEEEESSSCSTTCSHHHHHHHHCSS---C--SSEEEEEECTTSSCSSCCCHHHHTTSSSCCTTCEEECCCCCHHHH
T ss_pred CeEEEEEEecCcchhhhHHHHHHHHhCCC---C--CcEEEEEcCcccCCcchHHHHHHhCCCccCCCCeEEEecCChhhh
Confidence 458999997543321 2222344444332 2 89999999999865333111111110011225677776665
Q ss_pred --CCCHHHHHHHHHHHHHH
Q psy2600 105 --GDNCWVNTRTPEINPLK 121 (158)
Q Consensus 105 --~~~i~~lf~~l~~~~~~ 121 (158)
+.|+.+++..+.+.+..
T Consensus 244 ~~~~gv~~l~~~~~~~~~~ 262 (315)
T 1jwy_B 244 IAKKSIRESLKSEILYFKN 262 (315)
T ss_dssp SSSCCHHHHHHHHHHHHHT
T ss_pred ccCCCHHHHHHHHHHHHhC
Confidence 67889999988877754
No 203
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=97.63 E-value=0.00011 Score=56.74 Aligned_cols=92 Identities=12% Similarity=0.094 Sum_probs=52.1
Q ss_pred EEEEECCCCCC----------eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH
Q psy2600 19 KVVLLGDPSCG----------KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88 (158)
Q Consensus 19 ki~~~G~~~vg----------k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 88 (158)
.++++-.+|.+ +.+++|+|++.....+.+.. .+ . . .|.++|+||+|+...... ......
T Consensus 168 ~~iliDT~Gi~~~~~~l~~~~d~vl~V~d~~~~~~~~~i~~---~i--l--~---~~~ivVlNK~Dl~~~~~~-~~~~~~ 236 (349)
T 2www_A 168 DIILIETVGVGQSEFAVADMVDMFVLLLPPAGGDELQGIKR---GI--I--E---MADLVAVTKSDGDLIVPA-RRIQAE 236 (349)
T ss_dssp SEEEEECCCC--CHHHHHTTCSEEEEEECCC-----------------C--C---SCSEEEECCCSGGGHHHH-HHHHHH
T ss_pred CEEEEECCCcchhhhhHHhhCCEEEEEEcCCcchhHHHhHH---HH--H--h---cCCEEEEeeecCCCchhH-HHHHHH
Confidence 44555555554 55999999876533221111 11 1 1 677999999998531110 011122
Q ss_pred HHH----------HhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 89 LAQ----------SLHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 89 ~~~----------~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+.. .++.+++.+||+++.|++++++.|.+.+..
T Consensus 237 l~~~l~~~~~~a~~~~~~vi~iSA~~g~Gi~~L~~~I~~~~~~ 279 (349)
T 2www_A 237 YVSALKLLRKRSQVWKPKVIRISARSGEGISEMWDKMKDFQDL 279 (349)
T ss_dssp HHHHHTTCC-----CCCEEEECCTTTCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCccccCCCceEEEEecCCCCCHHHHHHHHHHHHHH
Confidence 221 123568999999999999999999887644
No 204
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=97.62 E-value=0.00031 Score=59.06 Aligned_cols=29 Identities=7% Similarity=-0.268 Sum_probs=25.3
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhH
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKYL 123 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~ 123 (158)
+++|..||++|.|+..|++.+++.++...
T Consensus 262 ~Pv~~gSa~~~~Gv~~LLd~i~~~lPsP~ 290 (704)
T 2rdo_7 262 ILVTCGSAFKNKGVQAMLDAVIDYLPSPV 290 (704)
T ss_pred eEEEEeecccCccHHHHHHHHHHHCCChh
Confidence 46889999999999999999999887654
No 205
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=97.46 E-value=7.8e-05 Score=58.65 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=32.4
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHH---hCCeEEEEeCCCCCCHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQS---LHLHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~---~~~~~~~~Sa~~~~~i~~lf~ 113 (158)
+|+++|+||+|+.. .+....+.+. .+..++.+||+.+.++.++++
T Consensus 215 kP~i~v~NK~D~~~-----~~~l~~l~~~~~~~~~~vv~iSA~~e~~l~~L~~ 262 (397)
T 1wxq_A 215 KPMVIAANKADAAS-----DEQIKRLVREEEKRGYIVIPTSAAAELTLRKAAK 262 (397)
T ss_dssp SCEEEEEECGGGSC-----HHHHHHHHHHHHHTTCEEEEECHHHHHHHHSCSS
T ss_pred CCEEEEEeCccccc-----hHHHHHHHHHHhhcCCcEEEEeccchhhHHHHHh
Confidence 89999999999862 2223333333 367899999999988877644
No 206
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=97.42 E-value=8.4e-06 Score=63.01 Aligned_cols=55 Identities=13% Similarity=-0.074 Sum_probs=35.8
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHH--HHHHhC-CeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAK--LAQSLH-LHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~--~~~~~~-~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
.|+++|+||+|+............. +...++ ..++.+||+++.|+.++++.+.+.
T Consensus 198 ~~~i~V~NK~Dl~~~~~~~~~~~~~~~~~l~~~~~~v~~~SA~~~~~i~~l~~~l~~e 255 (353)
T 2x2e_A 198 QRTIGVITKLDLMDEGTDARDVLENKLLPLRRGYIGVVNRSQKDIDGKKDITAALAAE 255 (353)
T ss_dssp TTEEEEEECGGGSCTTCCCHHHHTTCSSCCTTCEEECCCCCHHHHHTTCCHHHHHHHH
T ss_pred CceEEEeccccccCcchhHHHHHhCCcccccCCceEEEeCCcccccccccHHHHHHHH
Confidence 8999999999986433211111110 000123 246789999999999999998873
No 207
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.42 E-value=0.00036 Score=53.65 Aligned_cols=92 Identities=12% Similarity=0.054 Sum_probs=52.5
Q ss_pred EEEEECCCCCC----------eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHH
Q psy2600 19 KVVLLGDPSCG----------KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88 (158)
Q Consensus 19 ki~~~G~~~vg----------k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~ 88 (158)
.++++--+|.+ +.+++++|.+..+..+.+..++. . .+.+++.||+|+.............
T Consensus 149 ~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i~~~i~-----~-----~~~ivvlNK~Dl~~~~~~s~~~~~~ 218 (337)
T 2qm8_A 149 DVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGIKKGIF-----E-----LADMIAVNKADDGDGERRASAAASE 218 (337)
T ss_dssp CEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------CCTTHH-----H-----HCSEEEEECCSTTCCHHHHHHHHHH
T ss_pred CEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHHHHHHh-----c-----cccEEEEEchhccCchhHHHHHHHH
Confidence 45555555554 44888998764332211111111 1 4557777999974322222222233
Q ss_pred HHHH----------hCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 89 LAQS----------LHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 89 ~~~~----------~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+... ++.+++.+||+++.|++++++.|.+...
T Consensus 219 l~~a~~l~~~~~~~~~~~vl~~Sal~g~gi~~L~~~I~~~~~ 260 (337)
T 2qm8_A 219 YRAALHILTPPSATWTPPVVTISGLHGKGLDSLWSRIEDHRS 260 (337)
T ss_dssp HHHHHTTBCCSBTTBCCCEEEEBTTTTBSHHHHHHHHHHHHH
T ss_pred HHHHHHhccccccCCCCCEEEEeCCCCCCHHHHHHHHHHHHH
Confidence 3321 1346889999999999999999988764
No 208
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=97.28 E-value=0.0014 Score=53.59 Aligned_cols=44 Identities=20% Similarity=0.183 Sum_probs=31.7
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH 77 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 77 (158)
+.|++|+|+|....---+....| ....+++ +|.+++.||+|...
T Consensus 123 ~~DgAvlVvda~~GV~~qT~~v~-~~a~~~~-----lp~i~fINK~Dr~~ 166 (548)
T 3vqt_A 123 AVDSALVVIDAAKGVEAQTRKLM-DVCRMRA-----TPVMTFVNKMDREA 166 (548)
T ss_dssp SCSEEEEEEETTTBSCHHHHHHH-HHHHHTT-----CCEEEEEECTTSCC
T ss_pred hcCceEEEeecCCCcccccHHHH-HHHHHhC-----CceEEEEecccchh
Confidence 66889999999875444444455 3444444 99999999999753
No 209
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=97.28 E-value=0.0038 Score=48.46 Aligned_cols=41 Identities=17% Similarity=0.092 Sum_probs=29.8
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCC
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSART 104 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~ 104 (158)
+|+++++||.|..-...........++...+..++.+||+.
T Consensus 200 KPvi~v~N~~e~~~~~n~~~~~v~~~~~~~~~~~i~~sA~~ 240 (363)
T 1jal_A 200 KPTMYIANVNEDGFENNPYLDRVREIAAKEGAVVVPVCAAI 240 (363)
T ss_dssp SCEEEEEECCTTCSSSCHHHHHHHHHHHHTTCEEEEECHHH
T ss_pred CcEEEEEecccccccccHHHHHHHHHHHHcCCCEEEechHH
Confidence 89999999999642112224456677777788999999764
No 210
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=96.85 E-value=0.00046 Score=58.51 Aligned_cols=82 Identities=9% Similarity=-0.102 Sum_probs=51.5
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHH----hC-CeEEEEeCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS----LH-LHSFAVSART 104 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~----~~-~~~~~~Sa~~ 104 (158)
+.+++|.|.+....-.+...++..+.... .|+++|.||+|+........ .... .+. ++ .+++.+||++
T Consensus 189 DlIL~VVDAs~~~~~~d~l~ll~~L~~~g-----~pvIlVlNKiDlv~~~~~~~-~il~-~~~~~l~lg~~~VV~iSA~~ 261 (772)
T 3zvr_A 189 CLILAVSPANSDLANSDALKIAKEVDPQG-----QRTIGVITKLDLMDEGTDAR-DVLE-NKLLPLRRGYIGVVNRSQKD 261 (772)
T ss_dssp EEEEEEEETTSCSSSCHHHHHHHHHCTTC-----SSEEEEEECTTSSCTTCCSH-HHHT-TCSSCCSSCEEECCCCCCEE
T ss_pred cEEEEEEcCCCCcchhHHHHHHHHHHhcC-----CCEEEEEeCcccCCcchhhH-HHHH-HHhhhhhccCCceEEecccc
Confidence 35889999876433333334455554332 89999999999864333221 1111 111 12 2457799999
Q ss_pred CCCHHHHHHHHHHH
Q psy2600 105 GDNCWVNTRTPEIN 118 (158)
Q Consensus 105 ~~~i~~lf~~l~~~ 118 (158)
|.|+++|++.+.+.
T Consensus 262 G~GvdeL~eaI~~e 275 (772)
T 3zvr_A 262 IDGKKDITAALAAE 275 (772)
T ss_dssp SSSSEEHHHHHHHH
T ss_pred cccchhHHHHHHHH
Confidence 99999999998864
No 211
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=96.74 E-value=0.0016 Score=54.11 Aligned_cols=30 Identities=7% Similarity=-0.180 Sum_probs=24.9
Q ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHHHhHh
Q psy2600 95 LHSFAVSARTGDNCWVNTRTPEINPLKYLQ 124 (158)
Q Consensus 95 ~~~~~~Sa~~~~~i~~lf~~l~~~~~~~~~ 124 (158)
.+++..||.++.||+.|++.+.+.++....
T Consensus 213 ~Pv~~gSa~~~~Gv~~LLd~i~~~~p~p~~ 242 (638)
T 3j25_A 213 FPLYHGSAKSNIGIDNLIEVITNKFYSSTH 242 (638)
T ss_dssp CCCCCCCSTTCCSHHHHHHHHHHSCCCSGG
T ss_pred ccccccccccCCCchhHhhhhhccccCccc
Confidence 457889999999999999999988765543
No 212
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=96.62 E-value=0.0081 Score=46.86 Aligned_cols=80 Identities=8% Similarity=-0.014 Sum_probs=42.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCC--------CccccHHHHHHHHHHhCCeEEEEeCC
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH--------QRVVTLERHAKLAQSLHLHSFAVSAR 103 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~--------~~~~~~~~~~~~~~~~~~~~~~~Sa~ 103 (158)
+++|.|.+++. .+......++..........|.+++.||+|... ....+.++...+...+.+.--.+-..
T Consensus 153 il~vvD~~~p~--~~~~~i~~EL~~~~~~l~~k~~~i~~nK~d~~gi~i~~~~~~~~l~~eeik~il~~~~lt~kpv~~~ 230 (376)
T 4a9a_A 153 LFIILDVNKPL--HHKQIIEKELEGVGIRLNKTPPDILIKKKEKGGISITNTVPLTHLGNDEIRAVMSEYRINSAEIAFR 230 (376)
T ss_dssp EEEEEETTSHH--HHHHHHHHHHHHTTEEETCCCCCEEEEECSSSCEEEEESSCCSSCCHHHHHHHHHHTTCCSEEEEEC
T ss_pred cccccccCccH--HHHHHHHHHHHHhhHhhccCChhhhhhHhhhhhhhhhcchhhhhccHHHHHHHHHHhcccCCCeeec
Confidence 88999998763 334444444543322111167889999999631 12244556666655555432222223
Q ss_pred CCCCHHHHHH
Q psy2600 104 TGDNCWVNTR 113 (158)
Q Consensus 104 ~~~~i~~lf~ 113 (158)
.+...+++.+
T Consensus 231 ~nv~eddl~d 240 (376)
T 4a9a_A 231 CDATVDDLID 240 (376)
T ss_dssp SCCCHHHHHH
T ss_pred ccCCHHHHHH
Confidence 3445555544
No 213
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=96.32 E-value=0.002 Score=52.73 Aligned_cols=44 Identities=16% Similarity=0.276 Sum_probs=34.3
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ 78 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 78 (158)
+.+|+|+|+++....+....|+..+.... .|+++|+||+|+...
T Consensus 190 D~il~VvDa~~~~~~~~~~~~l~~l~~~~-----~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 190 DLIILLFDAHKLEISDEFSEAIGALRGHE-----DKIRVVLNKADMVET 233 (550)
T ss_dssp SEEEEEEETTSCCCCHHHHHHHHHTTTCG-----GGEEEEEECGGGSCH
T ss_pred CEEEEEEeCCcCCCCHHHHHHHHHHHhcC-----CCEEEEEECCCccCH
Confidence 56999999987655666677877776543 889999999998653
No 214
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=95.96 E-value=0.035 Score=46.64 Aligned_cols=27 Identities=4% Similarity=-0.310 Sum_probs=23.2
Q ss_pred eEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 96 HSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 96 ~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+.+..||..+.|+..+++.+++.++..
T Consensus 266 pv~~gsa~~~~gv~~lLd~i~~~lPsP 292 (709)
T 4fn5_A 266 PAVCGSSFKNKGVPLVLDAVIDYLPAP 292 (709)
T ss_dssp EEEECBTTTTBTHHHHHHHHHHHSCCT
T ss_pred eeeeeecccCCchHHHHHHHHhhCCCC
Confidence 467889999999999999999887654
No 215
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=95.57 E-value=0.0091 Score=51.22 Aligned_cols=43 Identities=16% Similarity=0.114 Sum_probs=33.8
Q ss_pred CCeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 28 vgk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
..+++|+|+|+++..+++....|.... ... +|+++|+||+|+.
T Consensus 121 ~aD~ailVvDa~~g~~~qt~~~~~~~~-~~~-----~p~ilviNK~D~~ 163 (842)
T 1n0u_A 121 VTDGALVVVDTIEGVCVQTETVLRQAL-GER-----IKPVVVINKVDRA 163 (842)
T ss_dssp TCSEEEEEEETTTBSCHHHHHHHHHHH-HTT-----CEEEEEEECHHHH
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHH-HcC-----CCeEEEEECCCcc
Confidence 457799999999988888776665443 222 8999999999975
No 216
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.88 E-value=0.032 Score=41.35 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=12.2
Q ss_pred cEEEEEEeCCCCCC
Q psy2600 64 TYVALVANKGDMEH 77 (158)
Q Consensus 64 ~piilv~nK~Dl~~ 77 (158)
+++++|.+|+|...
T Consensus 141 ~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 141 VNIIPVIAKADTMT 154 (270)
T ss_dssp SEEEEEETTGGGSC
T ss_pred CcEEEEEeccccCC
Confidence 78999999999764
No 217
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.50 E-value=0.15 Score=40.49 Aligned_cols=39 Identities=8% Similarity=-0.023 Sum_probs=25.3
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
.+..+|.||+|.... ...+.......+.++.+++. |+++
T Consensus 240 ~i~gVIlTKlD~~~~----gG~~ls~~~~~g~PI~fig~--Ge~v 278 (443)
T 3dm5_A 240 PIGSIIVTKLDGSAK----GGGALSAVAATGAPIKFIGT--GEKI 278 (443)
T ss_dssp TTEEEEEECCSSCSS----HHHHHHHHHTTCCCEEEEEC--SSST
T ss_pred CCeEEEEECCCCccc----ccHHHHHHHHHCCCEEEEEc--CCCh
Confidence 345688999997532 23455556667888877775 5543
No 218
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=92.83 E-value=0.048 Score=42.34 Aligned_cols=50 Identities=20% Similarity=0.039 Sum_probs=35.7
Q ss_pred cEEEEEEeCCCCC--CC-ccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHH
Q psy2600 64 TYVALVANKGDME--HQ-RVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTR 113 (158)
Q Consensus 64 ~piilv~nK~Dl~--~~-~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~ 113 (158)
+|+++++||.|.. .. .....+....+++..+..++.+||+.+.++.+++.
T Consensus 202 KPvi~v~N~~e~d~~~~~~n~~~~~v~~~a~~~g~~vv~iSAk~E~el~eL~~ 254 (368)
T 2dby_A 202 KPVIYVANVAEEDLPDGRGNPQVEAVRRKALEEGAEVVVVSARLEAELAELSG 254 (368)
T ss_dssp SCEEEEEECCGGGTTTCTTCHHHHHHHHHHHHHTCEEEEECHHHHHHHHTSCH
T ss_pred CCeEEeccccHHhhcccchhhHHHHHHHHHHHcCCeEEEeechhHHHHHHhch
Confidence 7999999999842 21 12234567778888889999999988666555543
No 219
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=89.97 E-value=0.29 Score=39.58 Aligned_cols=77 Identities=12% Similarity=-0.005 Sum_probs=46.7
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEE-EEEEeCCCCCCCccccHHHHHHHHHHhCCeE----------
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV-ALVANKGDMEHQRVVTLERHAKLAQSLHLHS---------- 97 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pi-ilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~---------- 97 (158)
.+.+++|.|.+.... .......+... +|+ .+|.||+|...... .........+.++
T Consensus 214 pd~vllVvDa~~g~~---~~~~a~~~~~~------~~i~gvVlNK~D~~~~~g----~~l~~~~~~g~PI~fig~ge~~~ 280 (504)
T 2j37_W 214 PDNIVYVMDASIGQA---CEAQAKAFKDK------VDVASVIVTKLDGHAKGG----GALSAVAATKSPIIFIGTGEHID 280 (504)
T ss_dssp CSEEEEEEETTCCTT---HHHHHHHHHHH------HCCCCEEEECTTSCCCCT----HHHHHHHHHCCCEEEEECSSSTT
T ss_pred CceEEEEEecccccc---HHHHHHHHHhh------cCceEEEEeCCccccchH----HHHHHHHHhCCCeEEeccccchh
Confidence 356899999876432 12222333322 564 88999999863221 2223334444443
Q ss_pred --------EEEeCCCCCC-HHHHHHHHHHH
Q psy2600 98 --------FAVSARTGDN-CWVNTRTPEIN 118 (158)
Q Consensus 98 --------~~~Sa~~~~~-i~~lf~~l~~~ 118 (158)
+.+|+..|.| +.+|++.+.+.
T Consensus 281 dl~~f~~~~~vsal~G~Gdi~~Lie~i~e~ 310 (504)
T 2j37_W 281 DFEPFKTQPFISKLLGMGDIEGLIDKVNEL 310 (504)
T ss_dssp CEECCTHHHHHHCCCTTTTTTTTHHHHTTT
T ss_pred hhhccCcceeeehhcCCCcHHHHHHHHHHH
Confidence 3468888988 99998888765
No 220
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=84.22 E-value=2.3 Score=32.27 Aligned_cols=13 Identities=23% Similarity=0.455 Sum_probs=10.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-+.++|..|+|||
T Consensus 131 vi~lvG~nGaGKT 143 (328)
T 3e70_C 131 VIMFVGFNGSGKT 143 (328)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4678888888887
No 221
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=80.14 E-value=0.62 Score=33.71 Aligned_cols=22 Identities=14% Similarity=0.252 Sum_probs=18.5
Q ss_pred CCcceEEEEEEECCC---------CCCeEEE
Q psy2600 12 DNYEIQLKVVLLGDP---------SCGKIVI 33 (158)
Q Consensus 12 ~~~~~~~ki~~~G~~---------~vgk~~i 33 (158)
.....++||+++|.+ +||||.+
T Consensus 14 ~~~~~~~ki~lvG~~~~~~~~~~~~vGKSsL 44 (255)
T 3c5h_A 14 LYFQGTYNISVVGLSGTEKEKGQCGIGKSCL 44 (255)
T ss_dssp SSCCSCEEEEEEESCCCTTTTTTCCCSHHHH
T ss_pred CCCCceeEEEEECCCccccccCCCCcCHHHH
Confidence 456678999999999 9999943
No 222
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=76.42 E-value=5.7 Score=31.39 Aligned_cols=16 Identities=31% Similarity=0.515 Sum_probs=14.1
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
...+|+++|-+++|||
T Consensus 38 ~~~~IvlvGlpGsGKS 53 (469)
T 1bif_A 38 CPTLIVMVGLPARGKT 53 (469)
T ss_dssp CCEEEEEECCTTSSHH
T ss_pred CcEEEEEECCCCCCHH
Confidence 3568999999999998
No 223
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=72.80 E-value=6.7 Score=30.97 Aligned_cols=63 Identities=16% Similarity=0.117 Sum_probs=38.4
Q ss_pred EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 32 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
+++|.|.+..+ +.......+.+.. .+..+|.||+|... ....+.......+.++.+++. |+++
T Consensus 215 vlLVlDa~~gq---~a~~~a~~f~~~~-----~~~gVIlTKlD~~a----~~G~als~~~~~g~Pi~fig~--Ge~v 277 (433)
T 3kl4_A 215 VILVIDASIGQ---KAYDLASRFHQAS-----PIGSVIITKMDGTA----KGGGALSAVVATGATIKFIGT--GEKI 277 (433)
T ss_dssp EEEEEEGGGGG---GGHHHHHHHHHHC-----SSEEEEEECGGGCS----CHHHHHHHHHHHTCEEEEEEC--CSSS
T ss_pred eEEEEeCccch---HHHHHHHHHhccc-----CCcEEEEecccccc----cchHHHHHHHHHCCCEEEEEC--CCCh
Confidence 77888876432 2223334444332 45688999999753 233455666677899888776 6554
No 224
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=69.17 E-value=10 Score=29.32 Aligned_cols=51 Identities=16% Similarity=-0.128 Sum_probs=36.7
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
.|.+++.||+|... .++.+.+.+ ...++.+|+..+.|+++|...+.+.+.-
T Consensus 250 ~p~i~v~nKid~~~-----~eele~l~~--~~~~~~is~~~e~gLd~Li~~~y~~L~L 300 (376)
T 4a9a_A 250 MPAIYVLNKIDSLS-----IEELELLYR--IPNAVPISSGQDWNLDELLQVMWDRLNL 300 (376)
T ss_dssp ECEEEEEECGGGSC-----HHHHHHHTT--STTEEECCTTTCTTHHHHHHHHHHHHCC
T ss_pred cceEEEEecccccC-----HHHHHHHhc--ccchhhhhhhhcccchhHHHHHHHHcCC
Confidence 78999999999642 233333222 2347899999999999999888877643
No 225
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=65.10 E-value=14 Score=24.86 Aligned_cols=64 Identities=11% Similarity=-0.001 Sum_probs=37.3
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSF 98 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 98 (158)
|.++++...+.. + .....+++.+......+...++.+|.|++|... .. ..+..++.+.++.+++
T Consensus 99 d~viiv~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~~--~~-~~~~~~~l~~~~~~vl 162 (206)
T 4dzz_A 99 DLVIIPVTPSPL-D-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEMA--TM-LNVLKESIKDTGVKAF 162 (206)
T ss_dssp SEEEEEECSCTT-T-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTTE--EE-EHHHHHHHHHHTCCBC
T ss_pred CEEEEEecCCHH-H-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCCc--hH-HHHHHHHHHHcCCcee
Confidence 457888876543 4 666666666664321111167799999999532 12 2345555566675544
No 226
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=64.13 E-value=1.6 Score=32.57 Aligned_cols=18 Identities=17% Similarity=0.473 Sum_probs=14.4
Q ss_pred cceEEEEEEECCCCCCeE
Q psy2600 14 YEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 14 ~~~~~ki~~~G~~~vgk~ 31 (158)
.++.++++++|..|+|||
T Consensus 15 ~~~~~~I~lvG~nG~GKS 32 (301)
T 2qnr_A 15 KGFEFTLMVVGESGLGKS 32 (301)
T ss_dssp ---CEEEEEEEETTSSHH
T ss_pred cCCCEEEEEECCCCCCHH
Confidence 457789999999999998
No 227
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=63.65 E-value=2.1 Score=29.76 Aligned_cols=15 Identities=20% Similarity=0.341 Sum_probs=14.1
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
.+|++++|.+|+|||
T Consensus 38 ~~~i~ivG~~gvGKT 52 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKT 52 (226)
T ss_dssp CEEEEEEESTTSSHH
T ss_pred CeEEEEEcCCCCCHH
Confidence 589999999999998
No 228
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=60.83 E-value=22 Score=26.23 Aligned_cols=66 Identities=12% Similarity=0.038 Sum_probs=39.7
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcE-EEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCH
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNC 108 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i 108 (158)
+.+++|.|.+.. .+.......+... .+ ..+|.||+|.... ......+....+.++..++ .|+++
T Consensus 214 d~vllVvda~~g---~~~~~~~~~~~~~------~~i~gvVlnk~D~~~~----~g~~~~~~~~~~~pi~~i~--~Ge~v 278 (297)
T 1j8m_F 214 DEVTLVIDASIG---QKAYDLASKFNQA------SKIGTIIITKMDGTAK----GGGALSAVAATGATIKFIG--TGEKI 278 (297)
T ss_dssp SEEEEEEEGGGG---GGHHHHHHHHHHT------CTTEEEEEECGGGCTT----HHHHHHHHHTTTCCEEEEE--CSSST
T ss_pred CEEEEEeeCCch---HHHHHHHHHHHhh------CCCCEEEEeCCCCCcc----hHHHHHHHHHHCcCEEEEe--CCCCh
Confidence 558889887632 2332333333321 34 6788999996432 2345566777888887776 46666
Q ss_pred HH
Q psy2600 109 WV 110 (158)
Q Consensus 109 ~~ 110 (158)
++
T Consensus 279 ~d 280 (297)
T 1j8m_F 279 DE 280 (297)
T ss_dssp TC
T ss_pred hh
Confidence 54
No 229
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=60.48 E-value=2.4 Score=30.91 Aligned_cols=18 Identities=22% Similarity=0.228 Sum_probs=15.6
Q ss_pred cceEEEEEEECCCCCCeE
Q psy2600 14 YEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 14 ~~~~~ki~~~G~~~vgk~ 31 (158)
..-..||+++|.+++|||
T Consensus 23 ~~~~~~i~vvG~~~~GKS 40 (299)
T 2aka_B 23 DLDLPQIAVVGGQSAGKS 40 (299)
T ss_dssp TCCCCEEEEEEBTTSCHH
T ss_pred CCCCCeEEEEeCCCCCHH
Confidence 345679999999999999
No 230
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=59.61 E-value=12 Score=29.21 Aligned_cols=59 Identities=14% Similarity=-0.040 Sum_probs=36.6
Q ss_pred cEEEEEEeCCCCC-------CCccccHHH----HHHHH----HHhC---CeEEEEeC--CCCCCHHHHHHHHHHHHHHh
Q psy2600 64 TYVALVANKGDME-------HQRVVTLER----HAKLA----QSLH---LHSFAVSA--RTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 64 ~piilv~nK~Dl~-------~~~~~~~~~----~~~~~----~~~~---~~~~~~Sa--~~~~~i~~lf~~l~~~~~~~ 122 (158)
.|+++|.||.|+. .-......+ ...+. ...| ...+.+|+ ..+.|++++.+.+.+.+.+.
T Consensus 176 ~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~~~Lpeg 254 (413)
T 1tq4_A 176 KEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLISDLPIY 254 (413)
T ss_dssp CEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHHHHSCGG
T ss_pred CCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHHHhCccc
Confidence 8999999999962 101111122 22232 1222 25688899 66678999999998877553
No 231
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=56.76 E-value=28 Score=27.28 Aligned_cols=58 Identities=14% Similarity=0.067 Sum_probs=32.8
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCc-E-EEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEE
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPT-Y-VALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAV 100 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~-p-iilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (158)
+.+++|.|.+... +.......+. .. . | ..+|.||+|..... ..+..+....+.++..+
T Consensus 212 d~vllVvda~~g~---~~~~~~~~~~---~~---~~~i~gvVlnK~D~~~~~----g~~l~~~~~~~~pi~~i 271 (432)
T 2v3c_C 212 DEIILVIDGTIGQ---QAGIQAKAFK---EA---VGEIGSIIVTKLDGSAKG----GGALSAVAETKAPIKFI 271 (432)
T ss_dssp SEEEEEEEGGGGG---GHHHHHHHHH---TT---SCSCEEEEEECSSSCSTT----HHHHHHHHHSSCCEEEE
T ss_pred cceeEEeeccccH---HHHHHHHHHh---hc---ccCCeEEEEeCCCCccch----HHHHHHHHHHCCCEEEe
Confidence 4588899876532 2222222332 11 4 5 78999999975321 23444566667665554
No 232
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=56.60 E-value=5 Score=31.66 Aligned_cols=38 Identities=13% Similarity=0.151 Sum_probs=22.0
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHH---HHhCCeEEEEeC
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLA---QSLHLHSFAVSA 102 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~---~~~~~~~~~~Sa 102 (158)
+|+|+|.||+|.....++. .-...+. ...|+.++.+|.
T Consensus 177 ~~vI~Vi~KtD~Lt~~E~~-~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 177 VNIIPIIAKADAISKSELT-KFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp SEEEEEESCGGGSCHHHHH-HHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCEEEEEcchhccchHHHH-HHHHHHHHHHHHcCCcEEecCC
Confidence 8999999999976433221 1111122 234677777775
No 233
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=53.21 E-value=23 Score=27.92 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=33.0
Q ss_pred EEEEEECCCCCCeE------------EEEEEECCC------hhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 18 LKVVLLGDPSCGKI------------VIFMYDITS------GQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 18 ~ki~~~G~~~vgk~------------~i~v~d~~~------~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
--+++.|.+|+||| -++..+.++ .++...++.+....+.. -|.|+...-+|.
T Consensus 216 rGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~~~------~P~IifiDEiDa 285 (437)
T 4b4t_L 216 KGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEH------EPCIIFMDEVDA 285 (437)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHHHS------CSEEEEEECCCS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHHhc------CCceeeeecccc
Confidence 46889999999998 344445433 12333344444444333 678888999985
No 234
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=52.14 E-value=34 Score=24.42 Aligned_cols=13 Identities=38% Similarity=0.779 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+|||
T Consensus 53 ~~ll~G~~GtGKT 65 (285)
T 3h4m_A 53 GILLYGPPGTGKT 65 (285)
T ss_dssp EEEEESSSSSSHH
T ss_pred eEEEECCCCCcHH
Confidence 5899999999998
No 235
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=52.09 E-value=26 Score=23.40 Aligned_cols=12 Identities=33% Similarity=0.725 Sum_probs=11.5
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+++.|.+|+||+
T Consensus 41 ~ll~G~~G~GKT 52 (226)
T 2chg_A 41 LLFSGPPGTGKT 52 (226)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 899999999998
No 236
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=51.04 E-value=20 Score=27.76 Aligned_cols=41 Identities=15% Similarity=0.042 Sum_probs=28.0
Q ss_pred cEEEEEEeCCCCC-C-CccccHHHHHHHHHHhC--CeEEEEeCCC
Q psy2600 64 TYVALVANKGDME-H-QRVVTLERHAKLAQSLH--LHSFAVSART 104 (158)
Q Consensus 64 ~piilv~nK~Dl~-~-~~~~~~~~~~~~~~~~~--~~~~~~Sa~~ 104 (158)
.|+++++|+.|.. . ...-.......++...+ ..++.+||..
T Consensus 225 kp~~y~~Nv~e~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~sa~~ 269 (392)
T 1ni3_A 225 KPVIYLVNMSERDFLRQKNKYLPKIKKWIDENSPGDTLIPMSVAF 269 (392)
T ss_dssp SCEEEEEECCHHHHTTTCCSSHHHHHHHHHTTSTTCCEEEECHHH
T ss_pred CceEEEEEecchhhcccchHHHHHHHHHHHhcCCCCeEEEEEhHH
Confidence 8999999999842 1 11112345666776665 7799999885
No 237
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=50.39 E-value=30 Score=27.04 Aligned_cols=51 Identities=14% Similarity=0.124 Sum_probs=32.1
Q ss_pred EEEEECCCCCCeE------------EEEEEECCCh------hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 19 KVVLLGDPSCGKI------------VIFMYDITSG------QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 19 ki~~~G~~~vgk~------------~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
-+++.|.+|+||| -++..+.++. ++-..++..+...+.. -|.|+..--+|.
T Consensus 184 GvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar~~------aP~IIFiDEiDa 252 (405)
T 4b4t_J 184 GVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREH------APSIIFMDEIDS 252 (405)
T ss_dssp CEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHHHT------CSEEEEEESSSC
T ss_pred ceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHHHh------CCceEeeecchh
Confidence 5789999999998 3444444331 2333344444444433 677888888885
No 238
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=49.39 E-value=4.2 Score=31.58 Aligned_cols=14 Identities=29% Similarity=0.738 Sum_probs=12.9
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
+|++++|.+|+|||
T Consensus 1 ~kI~ivG~pnvGKS 14 (397)
T 1wxq_A 1 MEIGVVGKPNVGKS 14 (397)
T ss_dssp CEEEEEECTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 58999999999998
No 239
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=49.01 E-value=47 Score=25.66 Aligned_cols=13 Identities=46% Similarity=0.623 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
=|++.|.+|+|||
T Consensus 260 lIil~G~pGSGKS 272 (416)
T 3zvl_A 260 VVVAVGFPGAGKS 272 (416)
T ss_dssp EEEEESCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4788999999998
No 240
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=48.84 E-value=40 Score=24.82 Aligned_cols=14 Identities=36% Similarity=0.646 Sum_probs=12.7
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+|||
T Consensus 52 ~~vLl~GppGtGKT 65 (322)
T 3eie_A 52 SGILLYGPPGTGKS 65 (322)
T ss_dssp CEEEEECSSSSCHH
T ss_pred CeEEEECCCCCcHH
Confidence 46899999999998
No 241
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=48.82 E-value=5.2 Score=29.47 Aligned_cols=15 Identities=27% Similarity=0.713 Sum_probs=13.8
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
.++++++|.+|+|||
T Consensus 120 ~~~v~~vG~~nvGKS 134 (282)
T 1puj_A 120 AIRALIIGIPNVGKS 134 (282)
T ss_dssp CEEEEEEESTTSSHH
T ss_pred CceEEEEecCCCchH
Confidence 478999999999998
No 242
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=47.84 E-value=26 Score=27.61 Aligned_cols=52 Identities=12% Similarity=0.126 Sum_probs=32.8
Q ss_pred EEEEEECCCCCCeE------------EEEEEECCCh------hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 18 LKVVLLGDPSCGKI------------VIFMYDITSG------QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 18 ~ki~~~G~~~vgk~------------~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
--+++.|.+|+||| -++..+.++. ++-..++..+...+.. -|.|+..--+|.
T Consensus 216 rGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~~~------aP~IifiDEiDa 285 (434)
T 4b4t_M 216 KGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEK------APTIIFIDELDA 285 (434)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHHHH------CSEEEEEECTHH
T ss_pred CeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHHhc------CCeEEeecchhh
Confidence 46899999999998 4555555432 2223334444444443 577888888884
No 243
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=46.77 E-value=6.1 Score=27.68 Aligned_cols=13 Identities=46% Similarity=0.738 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|+++|.+|+||+
T Consensus 2 ~Iil~GpPGsGKg 14 (206)
T 3sr0_A 2 ILVFLGPPGAGKG 14 (206)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4889999999998
No 244
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=45.73 E-value=5.8 Score=30.03 Aligned_cols=16 Identities=25% Similarity=0.372 Sum_probs=14.4
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
-..+|+++|.+++|||
T Consensus 30 ~~~~I~vvG~~~~GKS 45 (353)
T 2x2e_A 30 DLPQIAVVGGQSAGKS 45 (353)
T ss_dssp CCCEEEEECBTTSSHH
T ss_pred CCCeEEEECCCCCCHH
Confidence 4569999999999998
No 245
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=45.07 E-value=29 Score=27.26 Aligned_cols=51 Identities=18% Similarity=0.169 Sum_probs=31.5
Q ss_pred EEEEECCCCCCeE------------EEEEEECCCh------hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 19 KVVLLGDPSCGKI------------VIFMYDITSG------QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 19 ki~~~G~~~vgk~------------~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
-+++.|.+|+||| -++..+.++. ++-..++..+...+.. -|.|+..--+|.
T Consensus 208 GiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~~~------aP~IifiDEiD~ 276 (428)
T 4b4t_K 208 GVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAREN------APSIIFIDEVDS 276 (428)
T ss_dssp EEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHHHT------CSEEEEEECTHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHHHc------CCCeeechhhhh
Confidence 4899999999998 4455554431 2223344444444433 677888887773
No 246
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=43.71 E-value=75 Score=21.66 Aligned_cols=63 Identities=5% Similarity=0.011 Sum_probs=38.5
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSF 98 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 98 (158)
.|.+|++...+ ..+.......++.+.... . .++.+|.|++|..... ...+..+..+.++.+++
T Consensus 91 aD~viiv~~~~-~~~~~~~~~~~~~l~~~~-~---~~~~vv~N~~~~~~~~--~~~~~~~~l~~~g~~v~ 153 (209)
T 3cwq_A 91 CDLLVIPSTPD-ALALDALMLTIETLQKLG-N---NRFRILLTIIPPYPSK--DGDEARQLLTTAGLPLF 153 (209)
T ss_dssp SSEEEEEECSS-HHHHHHHHHHHHHHHHTC-S---SSEEEEECSBCCTTSC--HHHHHHHHHHHTTCCBC
T ss_pred CCEEEEEecCC-chhHHHHHHHHHHHHhcc-C---CCEEEEEEecCCccch--HHHHHHHHHHHcCCchh
Confidence 45678887653 566677767777766532 1 5688999999964301 12344555555665544
No 247
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=42.19 E-value=37 Score=26.83 Aligned_cols=52 Identities=15% Similarity=0.082 Sum_probs=32.3
Q ss_pred EEEEEECCCCCCeE------------EEEEEECCCh------hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 18 LKVVLLGDPSCGKI------------VIFMYDITSG------QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 18 ~ki~~~G~~~vgk~------------~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
--+++.|.+|+||| -++..+.++. ++-..++..+...+.. -|.|+..--+|.
T Consensus 217 rGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar~~------aP~IIfiDEiDa 286 (437)
T 4b4t_I 217 KGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGEN------APSIVFIDEIDA 286 (437)
T ss_dssp SEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHHHT------CSEEEEEEEESS
T ss_pred CCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHHhc------CCcEEEEehhhh
Confidence 35899999999998 4455554431 2222333444444333 677888888885
No 248
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=40.56 E-value=7.7 Score=25.36 Aligned_cols=13 Identities=31% Similarity=0.470 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 3 ~i~l~G~~GsGKs 15 (173)
T 3kb2_A 3 LIILEGPDCCFKS 15 (173)
T ss_dssp EEEEECSSSSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5889999999998
No 249
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=39.87 E-value=44 Score=26.67 Aligned_cols=53 Identities=11% Similarity=0.122 Sum_probs=32.9
Q ss_pred EEEEEECCCCCCeE------------EEEEEECCCh------hHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 18 LKVVLLGDPSCGKI------------VIFMYDITSG------QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 18 ~ki~~~G~~~vgk~------------~i~v~d~~~~------~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
--+++.|.+|+||| -++..+.++. ++-..++..+...+.. -|.|++.--+|..
T Consensus 244 rGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar~~------aP~IIfiDEiDai 314 (467)
T 4b4t_H 244 KGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTK------KACIIFFDEIDAV 314 (467)
T ss_dssp SEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHHHT------CSEEEEEECCTTT
T ss_pred CceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHHhc------CCceEeecccccc
Confidence 36889999999998 4445554331 2223333444443332 6788999999853
No 250
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=39.67 E-value=9.1 Score=26.29 Aligned_cols=13 Identities=46% Similarity=0.782 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|++.|.+|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (216)
T 3fb4_A 2 NIVLMGLPGAGKG 14 (216)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6899999999998
No 251
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=39.46 E-value=9.2 Score=26.31 Aligned_cols=13 Identities=46% Similarity=0.749 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|++.|.+|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (216)
T 3dl0_A 2 NLVLMGLPGAGKG 14 (216)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6899999999998
No 252
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=38.60 E-value=9 Score=27.11 Aligned_cols=12 Identities=42% Similarity=0.808 Sum_probs=10.6
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
|+++|.+|+||+
T Consensus 32 I~llGpPGsGKg 43 (217)
T 3umf_A 32 IFVLGGPGSGKG 43 (217)
T ss_dssp EEEECCTTCCHH
T ss_pred EEEECCCCCCHH
Confidence 567899999998
No 253
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=38.38 E-value=37 Score=25.21 Aligned_cols=13 Identities=23% Similarity=0.475 Sum_probs=11.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|..|+|||
T Consensus 106 vi~ivG~~GsGKT 118 (306)
T 1vma_A 106 VIMVVGVNGTGKT 118 (306)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEEcCCCChHH
Confidence 4789999999998
No 254
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=38.33 E-value=94 Score=21.28 Aligned_cols=64 Identities=13% Similarity=0.087 Sum_probs=41.5
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAV 100 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (158)
.|.++++... +..+...+..+++.+....... ..+-+|.|+++.... ... +.+.+.++.+++.+
T Consensus 141 ad~viiv~~~-~~~~~~~~~~~~~~l~~~~~~~--~~~~~v~N~~~~~~~--~~~---~~~~~~~~~~v~~~ 204 (245)
T 3ea0_A 141 LDELCIVTTP-SLQSLRRAGQLLKLCKEFEKPI--SRIEIILNRADTNSR--ITS---DEIEKVIGRPISKR 204 (245)
T ss_dssp CSEEEEEECS-SHHHHHHHHHHHHHHHTCSSCC--SCEEEEEESTTSCTT--SCH---HHHHHHHTSCEEEE
T ss_pred CCEEEEEecC-cHHHHHHHHHHHHHHHHhCCCc--cceEEEEecCCCCCC--CCH---HHHHHHhCCCeEEE
Confidence 3557777765 4667777778888877554322 557899999985432 222 34555678777665
No 255
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=37.80 E-value=9.1 Score=28.95 Aligned_cols=14 Identities=29% Similarity=0.498 Sum_probs=13.1
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.+|+++|.+++|||
T Consensus 35 p~I~vvG~~~sGKS 48 (360)
T 3t34_A 35 PAIAVVGGQSSGKS 48 (360)
T ss_dssp CEEEEECBTTSSHH
T ss_pred CEEEEECCCCCcHH
Confidence 39999999999998
No 256
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=37.69 E-value=9.4 Score=25.04 Aligned_cols=13 Identities=46% Similarity=0.915 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+|||
T Consensus 45 ~~ll~G~~G~GKT 57 (195)
T 1jbk_A 45 NPVLIGEPGVGKT 57 (195)
T ss_dssp EEEEECCTTSCHH
T ss_pred ceEEECCCCCCHH
Confidence 4789999999998
No 257
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=37.65 E-value=9.4 Score=24.63 Aligned_cols=14 Identities=36% Similarity=0.781 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+++.|.+|+||+
T Consensus 25 ~~vll~G~~GtGKt 38 (145)
T 3n70_A 25 IAVWLYGAPGTGRM 38 (145)
T ss_dssp SCEEEESSTTSSHH
T ss_pred CCEEEECCCCCCHH
Confidence 45899999999997
No 258
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=37.01 E-value=9.8 Score=24.69 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=11.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-|++.|.+|+|||
T Consensus 3 ~I~l~G~~GsGKs 15 (179)
T 3lw7_A 3 VILITGMPGSGKS 15 (179)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999998
No 259
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=35.84 E-value=11 Score=24.86 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-|++.|.+|+|||
T Consensus 4 ~I~i~G~~GsGKS 16 (181)
T 1ly1_A 4 IILTIGCPGSGKS 16 (181)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEecCCCCCHH
Confidence 4789999999998
No 260
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=35.49 E-value=7.1 Score=30.05 Aligned_cols=14 Identities=43% Similarity=0.653 Sum_probs=12.9
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
+++.++|.+|+|||
T Consensus 2 ~~v~IVG~pnvGKS 15 (368)
T 2dby_A 2 LAVGIVGLPNVGKS 15 (368)
T ss_dssp CSEEEECCSSSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 57899999999998
No 261
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=35.47 E-value=12 Score=25.35 Aligned_cols=13 Identities=38% Similarity=0.958 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
++.++|..|+|||
T Consensus 2 ~i~l~G~nGsGKT 14 (178)
T 1ye8_A 2 KIIITGEPGVGKT 14 (178)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6789999999998
No 262
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=35.28 E-value=12 Score=24.93 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|+++|.+|+|||
T Consensus 7 ~i~l~G~~GsGKs 19 (185)
T 3trf_A 7 NIYLIGLMGAGKT 19 (185)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 263
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=34.36 E-value=13 Score=25.36 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.++++|.+|+|||
T Consensus 27 ~i~l~G~~GsGKs 39 (199)
T 3vaa_A 27 RIFLTGYMGAGKT 39 (199)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEEcCCCCCHH
Confidence 6899999999999
No 264
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=34.21 E-value=12 Score=24.63 Aligned_cols=13 Identities=31% Similarity=0.570 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.++++|.+|+|||
T Consensus 6 ~i~l~G~~GsGKS 18 (173)
T 1kag_A 6 NIFLVGPMGAGKS 18 (173)
T ss_dssp CEEEECCTTSCHH
T ss_pred eEEEECCCCCCHH
Confidence 4889999999998
No 265
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=33.81 E-value=33 Score=26.99 Aligned_cols=34 Identities=15% Similarity=0.271 Sum_probs=23.1
Q ss_pred EEEEEECCCCCCeE-----------------EEEEEECCChhHHhhHHHHH
Q psy2600 18 LKVVLLGDPSCGKI-----------------VIFMYDITSGQSFHSIPTWV 51 (158)
Q Consensus 18 ~ki~~~G~~~vgk~-----------------~i~v~d~~~~~s~~~~~~~~ 51 (158)
.-++++|.+|+||| +++..|+-.+..++.+..|.
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r~~a~eqL~~~~ 148 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYRPAAYDQLLQLG 148 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSCHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccchhHHHHHHHHH
Confidence 46788899999998 45566665555555554443
No 266
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=33.77 E-value=12 Score=25.10 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|.+|+|||
T Consensus 7 ~i~i~GpsGsGKS 19 (180)
T 1kgd_A 7 TLVLLGAHGVGRR 19 (180)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999998
No 267
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=33.37 E-value=13 Score=24.91 Aligned_cols=13 Identities=31% Similarity=0.639 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 2 ~I~i~G~~GsGKs 14 (205)
T 2jaq_A 2 KIAIFGTVGAGKS 14 (205)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCccCHH
Confidence 4889999999998
No 268
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=33.18 E-value=12 Score=24.61 Aligned_cols=13 Identities=38% Similarity=0.606 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-|++.|-+|+|||
T Consensus 5 ~i~l~G~~GsGKS 17 (178)
T 1qhx_A 5 MIILNGGSSAGKS 17 (178)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4889999999998
No 269
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=32.51 E-value=11 Score=25.01 Aligned_cols=13 Identities=31% Similarity=0.437 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 3 ~I~i~G~~GsGKs 15 (194)
T 1nks_A 3 IGIVTGIPGVGKS 15 (194)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 270
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=32.41 E-value=14 Score=24.79 Aligned_cols=13 Identities=31% Similarity=0.782 Sum_probs=12.3
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+|||
T Consensus 12 ~I~l~G~~GsGKS 24 (184)
T 1y63_A 12 NILITGTPGTGKT 24 (184)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 6999999999998
No 271
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=32.21 E-value=15 Score=30.74 Aligned_cols=16 Identities=31% Similarity=0.478 Sum_probs=14.6
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
-.++|+++|.+++|||
T Consensus 68 ~~~~V~VvG~~naGKS 83 (695)
T 2j69_A 68 GVFRLLVLGDMKRGKS 83 (695)
T ss_dssp CCEEEEEECCTTSCHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 4689999999999998
No 272
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=32.12 E-value=29 Score=26.12 Aligned_cols=48 Identities=15% Similarity=-0.058 Sum_probs=35.8
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEIN 118 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~ 118 (158)
+| ++|.+|-|.. +++..+.++..+++++.++..+...+..+..++...
T Consensus 81 ~P-~IIltrg~~~------peelie~A~~~~IPVL~T~~~ts~~~~~l~~~l~~~ 128 (314)
T 1ko7_A 81 TP-AIIVTRDLEP------PEELIEAAKEHETPLITSKIATTQLMSRLTTFLEHE 128 (314)
T ss_dssp CC-CEEECTTCCC------CHHHHHHHHHTTCCEEECCSCHHHHHHHHHHHHHHH
T ss_pred CC-EEEEeCCCCC------CHHHHHHHHHCCCeEEEECCchhHHHHHHHHHHHHh
Confidence 66 5567888764 346778888899999999888777777776666554
No 273
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=32.10 E-value=15 Score=25.36 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=12.7
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..++++|.+|+|||
T Consensus 6 ~~i~i~G~~GsGKS 19 (227)
T 1cke_A 6 PVITIDGPSGAGKG 19 (227)
T ss_dssp CEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 36999999999998
No 274
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=31.94 E-value=12 Score=25.08 Aligned_cols=13 Identities=38% Similarity=0.680 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|.+|+|||
T Consensus 11 ~i~l~G~~GsGKS 23 (191)
T 1zp6_A 11 ILLLSGHPGSGKS 23 (191)
T ss_dssp EEEEEECTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 3789999999998
No 275
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=31.62 E-value=67 Score=25.77 Aligned_cols=15 Identities=27% Similarity=0.414 Sum_probs=12.7
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
...|+++|.+|+|||
T Consensus 101 ~~vI~ivG~~GvGKT 115 (504)
T 2j37_W 101 QNVIMFVGLQGSGKT 115 (504)
T ss_dssp -EEEEEECSTTSSHH
T ss_pred CeEEEEECCCCCCHH
Confidence 357889999999998
No 276
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=31.51 E-value=16 Score=26.27 Aligned_cols=15 Identities=47% Similarity=0.649 Sum_probs=14.1
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
.+++++.|.+|+|||
T Consensus 6 ~l~I~~~~kgGvGKT 20 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKT 20 (228)
T ss_dssp CEEEEEESSTTSSHH
T ss_pred eEEEEEECCCCCcHH
Confidence 589999999999998
No 277
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=31.33 E-value=13 Score=25.55 Aligned_cols=13 Identities=46% Similarity=0.912 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|++.|.+|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (214)
T 1e4v_A 2 RIILLGAPVAGKG 14 (214)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 278
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=31.31 E-value=16 Score=23.84 Aligned_cols=13 Identities=31% Similarity=0.498 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
+|++.|.+|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (168)
T 2pt5_A 2 RIYLIGFMCSGKS 14 (168)
T ss_dssp EEEEESCTTSCHH
T ss_pred eEEEECCCCCCHH
Confidence 5899999999998
No 279
>3do6_A Formate--tetrahydrofolate ligase; TM1766, putative formyltetrahydrofolate synthetase, structural genomics; HET: MSE; 1.85A {Thermotoga maritima} SCOP: c.37.1.0
Probab=31.13 E-value=89 Score=25.29 Aligned_cols=68 Identities=13% Similarity=0.097 Sum_probs=43.5
Q ss_pred HhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCC---CCCHHHHHHHHHHHH
Q psy2600 44 FHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSART---GDNCWVNTRTPEINP 119 (158)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~---~~~i~~lf~~l~~~~ 119 (158)
+.++...++.++++. +|+++..|+..-..+.+ .+..+++++..|..+ .+|-.+ |.|-.+|-+.+++.+
T Consensus 346 ~~NL~kHIen~~~fG-----vpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~-~~s~~wa~GG~G~~~LA~~Vv~~~ 416 (543)
T 3do6_A 346 FKNLRVHVENLRKFN-----LPVVVALNRFSTDTEKE--IAYVVKECEKLGVRV-AVSEVFKKGSEGGVELAKAVAEAA 416 (543)
T ss_dssp HHHHHHHHHHHHHTT-----CCEEEEEECCTTCCHHH--HHHHHHHHHTTTCEE-EEECHHHHGGGGSHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHcC-----CCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCE-EEechhhccchhHHHHHHHHHHHh
Confidence 445556667777665 99999999987543332 345677888888865 444433 455556655555544
No 280
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=30.93 E-value=17 Score=23.71 Aligned_cols=13 Identities=23% Similarity=0.450 Sum_probs=11.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|..|+|||
T Consensus 38 ~~~l~G~~G~GKT 50 (149)
T 2kjq_A 38 FIYVWGEEGAGKS 50 (149)
T ss_dssp EEEEESSSTTTTC
T ss_pred EEEEECCCCCCHH
Confidence 4789999999998
No 281
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=30.89 E-value=16 Score=28.02 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=15.2
Q ss_pred ceEEEEEEECCCCCCeE
Q psy2600 15 EIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 15 ~~~~ki~~~G~~~vgk~ 31 (158)
.-.+|++++|..++||+
T Consensus 31 ~~~~killlG~~~SGKS 47 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKS 47 (362)
T ss_dssp CCCEEEEEECSTTSSHH
T ss_pred cCccEEEEECCCCCcHH
Confidence 44789999999999998
No 282
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=30.85 E-value=14 Score=25.22 Aligned_cols=13 Identities=31% Similarity=0.434 Sum_probs=11.5
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|.+|+||+
T Consensus 14 ~i~l~G~sGsGKs 26 (204)
T 2qor_A 14 PLVVCGPSGVGKG 26 (204)
T ss_dssp CEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 3689999999998
No 283
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=30.74 E-value=10 Score=24.44 Aligned_cols=13 Identities=23% Similarity=0.209 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+||+
T Consensus 29 ~vll~G~~GtGKt 41 (143)
T 3co5_A 29 PVFLTGEAGSPFE 41 (143)
T ss_dssp CEEEEEETTCCHH
T ss_pred cEEEECCCCccHH
Confidence 5899999999998
No 284
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=30.62 E-value=1.1e+02 Score=22.23 Aligned_cols=13 Identities=31% Similarity=0.649 Sum_probs=9.2
Q ss_pred EEEEECC-CCCCeE
Q psy2600 19 KVVLLGD-PSCGKI 31 (158)
Q Consensus 19 ki~~~G~-~~vgk~ 31 (158)
+++++|. +|+||+
T Consensus 49 ~~~L~~G~~G~GKT 62 (324)
T 3u61_B 49 HIILHSPSPGTGKT 62 (324)
T ss_dssp SEEEECSSTTSSHH
T ss_pred eEEEeeCcCCCCHH
Confidence 3455555 999998
No 285
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=30.60 E-value=14 Score=24.98 Aligned_cols=14 Identities=29% Similarity=0.299 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+|||
T Consensus 55 ~~~~l~G~~GtGKT 68 (202)
T 2w58_A 55 KGLYLHGSFGVGKT 68 (202)
T ss_dssp CEEEEECSTTSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 46889999999998
No 286
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=30.60 E-value=68 Score=21.31 Aligned_cols=45 Identities=11% Similarity=0.083 Sum_probs=30.8
Q ss_pred HHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEE
Q psy2600 47 IPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAV 100 (158)
Q Consensus 47 ~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (158)
+....+.+.+.. .|+|++|.-+.... ..++..++++..+++++.+
T Consensus 24 v~~aa~~L~~Ak-----rPvil~G~g~~~~~----a~~~l~~lae~~~iPV~~t 68 (170)
T 3cf4_G 24 PEMAAKIISKAK-----RPLLMVGTLALDPE----LLDRVVKISKAANIPIAAT 68 (170)
T ss_dssp HHHHHHHHHHCS-----SEEEEECSTTCCHH----HHHHHHHHHHHHTCCEEEC
T ss_pred HHHHHHHHHcCC-----CCEEEECCCccchh----HHHHHHHHHHHhCCCEEEC
Confidence 444555555433 89999999876321 2457788999999998654
No 287
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=30.57 E-value=16 Score=24.23 Aligned_cols=14 Identities=43% Similarity=0.719 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+++.|.+|+|||
T Consensus 5 ~~I~l~G~~GsGKS 18 (186)
T 3cm0_A 5 QAVIFLGPPGAGKG 18 (186)
T ss_dssp EEEEEECCTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999998
No 288
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=30.32 E-value=14 Score=25.04 Aligned_cols=13 Identities=31% Similarity=0.611 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 20 ~I~l~G~~GsGKS 32 (202)
T 3t61_A 20 SIVVMGVSGSGKS 32 (202)
T ss_dssp CEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 289
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=30.24 E-value=17 Score=23.97 Aligned_cols=13 Identities=23% Similarity=0.256 Sum_probs=8.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-|++.|.+|+|||
T Consensus 7 ~I~l~G~~GsGKS 19 (183)
T 2vli_A 7 IIWINGPFGVGKT 19 (183)
T ss_dssp EEEEECCC----C
T ss_pred EEEEECCCCCCHH
Confidence 5889999999999
No 290
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=29.98 E-value=11 Score=24.65 Aligned_cols=13 Identities=54% Similarity=0.989 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+||+
T Consensus 45 ~vll~G~~G~GKT 57 (187)
T 2p65_A 45 NPILLGDPGVGKT 57 (187)
T ss_dssp EEEEESCGGGCHH
T ss_pred ceEEECCCCCCHH
Confidence 5689999999998
No 291
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=29.72 E-value=17 Score=24.69 Aligned_cols=14 Identities=36% Similarity=0.347 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
+.+.++|.+|+|||
T Consensus 3 ~~i~l~G~~GsGKS 16 (206)
T 1jjv_A 3 YIVGLTGGIGSGKT 16 (206)
T ss_dssp EEEEEECSTTSCHH
T ss_pred cEEEEECCCCCCHH
Confidence 46899999999998
No 292
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=29.68 E-value=15 Score=25.07 Aligned_cols=13 Identities=46% Similarity=0.598 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.++++|..|+|||
T Consensus 6 ~i~lvGpsGaGKS 18 (198)
T 1lvg_A 6 PVVLSGPSGAGKS 18 (198)
T ss_dssp CEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999998
No 293
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=29.57 E-value=15 Score=25.22 Aligned_cols=14 Identities=21% Similarity=0.389 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+|||
T Consensus 53 ~~~ll~G~~G~GKT 66 (242)
T 3bos_A 53 QAIYLWGPVKSGRT 66 (242)
T ss_dssp SEEEEECSTTSSHH
T ss_pred CeEEEECCCCCCHH
Confidence 36899999999998
No 294
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=29.53 E-value=12 Score=24.86 Aligned_cols=13 Identities=31% Similarity=0.739 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+|||
T Consensus 40 ~~~l~G~~G~GKT 52 (180)
T 3ec2_A 40 GLTFVGSPGVGKT 52 (180)
T ss_dssp EEEECCSSSSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5789999999998
No 295
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=29.49 E-value=15 Score=24.29 Aligned_cols=13 Identities=38% Similarity=0.601 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 5 ~I~i~G~~GsGKs 17 (192)
T 1kht_A 5 VVVVTGVPGVGST 17 (192)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 296
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=29.44 E-value=17 Score=25.77 Aligned_cols=19 Identities=21% Similarity=0.204 Sum_probs=14.1
Q ss_pred CcceEEEEEEECCCCCCeE
Q psy2600 13 NYEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 13 ~~~~~~ki~~~G~~~vgk~ 31 (158)
...-.+.|.+.|.+++|||
T Consensus 18 ~~~~~~iI~I~G~~GSGKS 36 (252)
T 1uj2_A 18 NGGEPFLIGVSGGTASGKS 36 (252)
T ss_dssp ---CCEEEEEECSTTSSHH
T ss_pred cCCCcEEEEEECCCCCCHH
Confidence 3334567999999999998
No 297
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=29.35 E-value=13 Score=24.71 Aligned_cols=14 Identities=29% Similarity=0.662 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-|++.|.+|+|||
T Consensus 6 ~~I~l~G~~GsGKS 19 (193)
T 2rhm_A 6 ALIIVTGHPATGKT 19 (193)
T ss_dssp EEEEEEESTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35889999999998
No 298
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=29.13 E-value=19 Score=25.48 Aligned_cols=14 Identities=36% Similarity=0.619 Sum_probs=13.0
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 30 ~~I~l~G~~GsGKs 43 (243)
T 3tlx_A 30 GRYIFLGAPGSGKG 43 (243)
T ss_dssp EEEEEECCTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 57999999999998
No 299
>2q5w_E Molybdopterin-converting factor subunit 2; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_A*
Probab=28.99 E-value=45 Score=22.14 Aligned_cols=36 Identities=6% Similarity=0.089 Sum_probs=28.3
Q ss_pred EECCCCCCeEEEEEEECCC--hhHHhhHHHHHHHHhhh
Q psy2600 22 LLGDPSCGKIVIFMYDITS--GQSFHSIPTWVDLFHLN 57 (158)
Q Consensus 22 ~~G~~~vgk~~i~v~d~~~--~~s~~~~~~~~~~~~~~ 57 (158)
=+|...+|+.+++|.-.+. .+.|+.....+++++..
T Consensus 82 R~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~ 119 (149)
T 2q5w_E 82 RIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEI 119 (149)
T ss_dssp ECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEcccCCCCeEEEEEEEcccHHHHHHHHHHHHHHHHhh
Confidence 3788889999777665544 56899999999999866
No 300
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=28.81 E-value=16 Score=24.26 Aligned_cols=12 Identities=50% Similarity=0.822 Sum_probs=11.1
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+.++|..|+|||
T Consensus 12 ~~l~G~nGsGKS 23 (171)
T 4gp7_A 12 VVLIGSSGSGKS 23 (171)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECCCCCCHH
Confidence 679999999999
No 301
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=28.77 E-value=16 Score=24.07 Aligned_cols=13 Identities=38% Similarity=0.503 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.++++|.+|+|||
T Consensus 10 ~i~l~G~~GsGKS 22 (175)
T 1knq_A 10 IYVLMGVSGSGKS 22 (175)
T ss_dssp EEEEECSTTSCHH
T ss_pred EEEEEcCCCCCHH
Confidence 4889999999998
No 302
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=28.62 E-value=13 Score=29.05 Aligned_cols=16 Identities=38% Similarity=0.632 Sum_probs=14.1
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
..+++.++|.+|+|||
T Consensus 21 ~~~kvgIVG~pnvGKS 36 (396)
T 2ohf_A 21 TSLKIGIVGLPNVGKS 36 (396)
T ss_dssp SCCCEEEECCSSSSHH
T ss_pred CCCEEEEECCCCCCHH
Confidence 3478999999999998
No 303
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=28.62 E-value=18 Score=24.91 Aligned_cols=14 Identities=43% Similarity=0.880 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 5 ~~I~l~G~~GsGKs 18 (220)
T 1aky_A 5 IRMVLIGPPGAGKG 18 (220)
T ss_dssp CEEEEECCTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 36899999999998
No 304
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=28.51 E-value=14 Score=24.40 Aligned_cols=13 Identities=31% Similarity=0.521 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
++++.|.+|+||+
T Consensus 6 ~i~i~G~~GsGKs 18 (175)
T 1via_A 6 NIVFIGFMGSGKS 18 (175)
T ss_dssp CEEEECCTTSCHH
T ss_pred EEEEEcCCCCCHH
Confidence 5899999999998
No 305
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=28.40 E-value=1.5e+02 Score=20.64 Aligned_cols=44 Identities=5% Similarity=-0.004 Sum_probs=25.4
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHh---hhcCCCCCcEEE-EEEeCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFH---LNRKSSTPTYVA-LVANKGDME 76 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~---~~~~~~~~~pii-lv~nK~Dl~ 76 (158)
|.+|++...+ ..++..+..+++.+. ...... .+++ +|.|++|..
T Consensus 135 D~viiv~~~~-~~s~~~~~~~~~~l~~~~~~~~~~--~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 135 EGVVVPVQAE-YYALEGVAGLLATLEEVRAGLNPR--LRLLGILVTMYDGR 182 (257)
T ss_dssp SEEEEEEESS-THHHHHHHHHHHHHHHHHHHTCTT--CEEEEEEEESBCTT
T ss_pred CeEEEEecCc-hHHHHHHHHHHHHHHHHHHHhCCC--ceEEEEEEEeECCC
Confidence 5588888765 345555444444443 211112 6664 899999853
No 306
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=28.40 E-value=16 Score=24.23 Aligned_cols=13 Identities=54% Similarity=0.800 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 4 ~I~l~G~~GsGKs 16 (184)
T 2iyv_A 4 KAVLVGLPGSGKS 16 (184)
T ss_dssp SEEEECSTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 4889999999998
No 307
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=28.40 E-value=17 Score=24.16 Aligned_cols=14 Identities=50% Similarity=0.764 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-|++.|.+|+|||
T Consensus 4 ~~I~l~G~~GsGKs 17 (196)
T 1tev_A 4 LVVFVLGGPGAGKG 17 (196)
T ss_dssp EEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 35899999999998
No 308
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=28.39 E-value=16 Score=25.06 Aligned_cols=12 Identities=42% Similarity=0.567 Sum_probs=11.2
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
++++|..|+||+
T Consensus 11 i~l~GpsGsGKs 22 (208)
T 3tau_A 11 IVLSGPSGVGKG 22 (208)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECcCCCCHH
Confidence 789999999998
No 309
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=28.35 E-value=16 Score=24.69 Aligned_cols=13 Identities=38% Similarity=0.802 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
++++.|..|+|||
T Consensus 3 ~i~i~G~~GsGKS 15 (204)
T 2if2_A 3 RIGLTGNIGCGKS 15 (204)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCcCHH
Confidence 6899999999998
No 310
>1fm0_E Molybdopterin convertin factor, subunit 2; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.41.5.1 PDB: 1fma_E 1nvi_E 3bii_E 1nvj_A
Probab=28.24 E-value=47 Score=22.06 Aligned_cols=35 Identities=14% Similarity=0.260 Sum_probs=27.8
Q ss_pred ECCCCCCeEEEEEEECCC--hhHHhhHHHHHHHHhhh
Q psy2600 23 LGDPSCGKIVIFMYDITS--GQSFHSIPTWVDLFHLN 57 (158)
Q Consensus 23 ~G~~~vgk~~i~v~d~~~--~~s~~~~~~~~~~~~~~ 57 (158)
+|...+|+.+++|.-.+. .+.|+.....+++++..
T Consensus 85 ~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~ 121 (150)
T 1fm0_E 85 IGELWPGDEIVFVGVTSAHRSSAFEAGQFIMDYLKTR 121 (150)
T ss_dssp CEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EcccCCCCEEEEEEEEcCcHHHHHHHHHHHHHHHHhc
Confidence 688889999777665544 57899999999999866
No 311
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=28.01 E-value=17 Score=24.51 Aligned_cols=12 Identities=17% Similarity=0.396 Sum_probs=11.2
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
++++|..|+|||
T Consensus 10 i~l~Gp~GsGKS 21 (205)
T 3tr0_A 10 FIISAPSGAGKT 21 (205)
T ss_dssp EEEECCTTSCHH
T ss_pred EEEECcCCCCHH
Confidence 789999999998
No 312
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=27.97 E-value=17 Score=24.56 Aligned_cols=13 Identities=38% Similarity=0.470 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|.+|+|||
T Consensus 8 ~i~l~G~~GsGKS 20 (207)
T 2j41_A 8 LIVLSGPSGVGKG 20 (207)
T ss_dssp EEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999998
No 313
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=27.91 E-value=17 Score=23.67 Aligned_cols=13 Identities=23% Similarity=0.746 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 4 ~I~l~G~~GsGKs 16 (173)
T 1e6c_A 4 PIFMVGARGCGMT 16 (173)
T ss_dssp CEEEESCTTSSHH
T ss_pred eEEEECCCCCCHH
Confidence 4899999999998
No 314
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=27.75 E-value=21 Score=24.03 Aligned_cols=14 Identities=21% Similarity=0.304 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 5 ~~I~i~G~~GsGKs 18 (213)
T 2plr_A 5 VLIAFEGIDGSGKS 18 (213)
T ss_dssp EEEEEECCTTSSHH
T ss_pred eEEEEEcCCCCCHH
Confidence 46899999999998
No 315
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=27.67 E-value=17 Score=24.06 Aligned_cols=14 Identities=36% Similarity=0.712 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 12 ~~i~i~G~~GsGKs 25 (180)
T 3iij_A 12 PNILLTGTPGVGKT 25 (180)
T ss_dssp CCEEEECSTTSSHH
T ss_pred CeEEEEeCCCCCHH
Confidence 35889999999998
No 316
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=27.33 E-value=18 Score=24.37 Aligned_cols=13 Identities=31% Similarity=0.383 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 6 ~I~l~G~~GsGKs 18 (204)
T 2v54_A 6 LIVFEGLDKSGKT 18 (204)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEEcCCCCCHH
Confidence 5899999999998
No 317
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=27.10 E-value=23 Score=27.91 Aligned_cols=15 Identities=20% Similarity=0.488 Sum_probs=13.4
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
.+++.++|..|+|||
T Consensus 42 i~~vaLvG~nGaGKS 56 (427)
T 2qag_B 42 CFNILCVGETGLGKS 56 (427)
T ss_dssp EEEEEEECSTTSSSH
T ss_pred eeEEEEECCCCCCHH
Confidence 367999999999998
No 318
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=26.95 E-value=21 Score=23.61 Aligned_cols=14 Identities=43% Similarity=0.589 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 7 ~~I~l~G~~GsGKs 20 (194)
T 1qf9_A 7 NVVFVLGGPGSGKG 20 (194)
T ss_dssp EEEEEEESTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 46899999999998
No 319
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=26.85 E-value=18 Score=24.03 Aligned_cols=13 Identities=23% Similarity=0.312 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (195)
T 2pbr_A 2 LIAFEGIDGSGKT 14 (195)
T ss_dssp EEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999998
No 320
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=26.81 E-value=18 Score=24.54 Aligned_cols=13 Identities=38% Similarity=0.662 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|..|+|||
T Consensus 31 ~i~l~G~~GsGKS 43 (200)
T 4eun_A 31 HVVVMGVSGSGKT 43 (200)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999998
No 321
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=26.73 E-value=18 Score=25.35 Aligned_cols=14 Identities=50% Similarity=0.983 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
--+++.|.+|+||+
T Consensus 40 ~~vll~G~~GtGKT 53 (262)
T 2qz4_A 40 KGALLLGPPGCGKT 53 (262)
T ss_dssp CEEEEESCTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 35889999999998
No 322
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=26.51 E-value=1.3e+02 Score=19.33 Aligned_cols=49 Identities=4% Similarity=-0.065 Sum_probs=27.4
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHHh
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~~ 122 (158)
+|++.+++|.+|. ..+....+...+.+.-..+..+.++++.+...+...
T Consensus 76 VP~~~v~sk~eLG----------~a~G~~~~~s~vaI~d~~~s~~~~l~~~i~~~~~~~ 124 (134)
T 2ale_A 76 VPYVFVPSRVALG----------RACGVSRPVIAASITTNDASAIKTQIYAVKDKIETL 124 (134)
T ss_dssp CCEEEESCHHHHH----------HHTTCSSCCSEEEEECCTTCTTHHHHHHHHHHHHHH
T ss_pred CCEEEECCHHHHH----------HHhCCCCCeEEEEEEcCChHHHHHHHHHHHHHHHHh
Confidence 8888887776652 111112232333333344456788888777766554
No 323
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=26.42 E-value=18 Score=24.51 Aligned_cols=13 Identities=23% Similarity=0.279 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|.+|+|||
T Consensus 27 ~i~l~G~sGsGKS 39 (200)
T 3uie_A 27 VIWVTGLSGSGKS 39 (200)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5889999999998
No 324
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=26.32 E-value=26 Score=27.02 Aligned_cols=25 Identities=16% Similarity=0.231 Sum_probs=20.8
Q ss_pred eEEEEEEECCCCCCeE---------------EEEEEECCC
Q psy2600 16 IQLKVVLLGDPSCGKI---------------VIFMYDITS 40 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~---------------~i~v~d~~~ 40 (158)
-...++++|.+|+||| -++|+|+..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkg 91 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNG 91 (437)
T ss_dssp GGGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETT
T ss_pred CcceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 3457899999999998 778899864
No 325
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=26.19 E-value=17 Score=24.26 Aligned_cols=13 Identities=31% Similarity=0.636 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 11 ~I~l~G~~GsGKs 23 (196)
T 2c95_A 11 IIFVVGGPGSGKG 23 (196)
T ss_dssp EEEEEECTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 326
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=26.17 E-value=20 Score=23.44 Aligned_cols=14 Identities=36% Similarity=0.458 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+++.|.+|+|||
T Consensus 8 ~~i~l~G~~GsGKS 21 (168)
T 1zuh_A 8 QHLVLIGFMGSGKS 21 (168)
T ss_dssp CEEEEESCTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 46889999999998
No 327
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=26.12 E-value=18 Score=29.37 Aligned_cols=19 Identities=26% Similarity=0.429 Sum_probs=16.2
Q ss_pred CcceEEEEEEECCCCCCeE
Q psy2600 13 NYEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 13 ~~~~~~ki~~~G~~~vgk~ 31 (158)
..+-..+|+++|.+++|||
T Consensus 61 ~~~~~~~V~vvG~~n~GKS 79 (550)
T 2qpt_A 61 DFDGKPMVLVAGQYSTGKT 79 (550)
T ss_dssp TTSSCCEEEEEEBTTSCHH
T ss_pred cccCCcEEEEECCCCCCHH
Confidence 3455789999999999998
No 328
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=26.11 E-value=19 Score=24.31 Aligned_cols=16 Identities=44% Similarity=0.787 Sum_probs=13.6
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
....|++.|.+++|||
T Consensus 19 ~~~~I~l~G~~GsGKS 34 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKG 34 (201)
T ss_dssp SCCEEEEECCTTSSHH
T ss_pred CCeEEEEECCCCCCHH
Confidence 3357999999999998
No 329
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=26.10 E-value=72 Score=26.10 Aligned_cols=13 Identities=15% Similarity=0.069 Sum_probs=11.4
Q ss_pred cEEEEEEeCCCCC
Q psy2600 64 TYVALVANKGDME 76 (158)
Q Consensus 64 ~piilv~nK~Dl~ 76 (158)
.+.|+|.||.|+.
T Consensus 215 ~rtI~VlTK~Dlv 227 (608)
T 3szr_A 215 DRTIGILTKPDLV 227 (608)
T ss_dssp CSEEEEEECGGGS
T ss_pred CceEEEecchhhc
Confidence 6789999999975
No 330
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=26.08 E-value=19 Score=24.68 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=11.1
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
|++.|.+|+||+
T Consensus 4 IVi~GPSG~GK~ 15 (186)
T 1ex7_A 4 IVISGPSGTGKS 15 (186)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 789999999997
No 331
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=25.86 E-value=19 Score=24.01 Aligned_cols=13 Identities=23% Similarity=0.411 Sum_probs=11.5
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|..|+|||
T Consensus 4 ii~l~G~~GaGKS 16 (189)
T 2bdt_A 4 LYIITGPAGVGKS 16 (189)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCcHH
Confidence 3689999999998
No 332
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=25.84 E-value=67 Score=23.68 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-+.++|..|+|||
T Consensus 102 vi~lvG~nGsGKT 114 (302)
T 3b9q_A 102 VIMIVGVNGGGKT 114 (302)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEEcCCCCCHH
Confidence 5789999999998
No 333
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=25.63 E-value=19 Score=24.92 Aligned_cols=14 Identities=43% Similarity=0.845 Sum_probs=12.7
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 8 ~~I~l~G~~GsGKs 21 (227)
T 1zd8_A 8 LRAVIMGAPGSGKG 21 (227)
T ss_dssp CEEEEEECTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 46899999999998
No 334
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=25.43 E-value=22 Score=24.79 Aligned_cols=14 Identities=50% Similarity=0.850 Sum_probs=12.8
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 17 ~~I~l~G~~GsGKs 30 (233)
T 1ak2_A 17 VRAVLLGPPGAGKG 30 (233)
T ss_dssp CEEEEECCTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 46999999999998
No 335
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=25.40 E-value=28 Score=24.16 Aligned_cols=13 Identities=38% Similarity=0.672 Sum_probs=7.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-+.++|..|+|||
T Consensus 29 ii~l~Gp~GsGKS 41 (231)
T 3lnc_A 29 ILVLSSPSGCGKT 41 (231)
T ss_dssp EEEEECSCC----
T ss_pred EEEEECCCCCCHH
Confidence 3789999999998
No 336
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=25.12 E-value=22 Score=26.32 Aligned_cols=14 Identities=36% Similarity=0.423 Sum_probs=12.8
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+|||
T Consensus 153 ~~lll~G~~GtGKT 166 (308)
T 2qgz_A 153 KGLYLYGDMGIGKS 166 (308)
T ss_dssp CEEEEECSTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 57899999999998
No 337
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=25.10 E-value=26 Score=26.39 Aligned_cols=18 Identities=39% Similarity=0.549 Sum_probs=15.2
Q ss_pred cceEEEEEEECCCCCCeE
Q psy2600 14 YEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 14 ~~~~~ki~~~G~~~vgk~ 31 (158)
..-++|++++|...+||+
T Consensus 4 ~~~~~klLlLG~geSGKS 21 (327)
T 3ohm_A 4 ARRELKLLLLGTGESGKS 21 (327)
T ss_dssp -CCEEEEEEECSTTSSHH
T ss_pred hcccceEEEEcCCCccHH
Confidence 345789999999999998
No 338
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=25.10 E-value=20 Score=25.97 Aligned_cols=15 Identities=33% Similarity=0.698 Sum_probs=13.2
Q ss_pred EEEEEEECCCCCCeE
Q psy2600 17 QLKVVLLGDPSCGKI 31 (158)
Q Consensus 17 ~~ki~~~G~~~vgk~ 31 (158)
...+++.|.+|+|||
T Consensus 67 ~~~vll~G~~GtGKT 81 (309)
T 3syl_A 67 TLHMSFTGNPGTGKT 81 (309)
T ss_dssp CCEEEEEECTTSSHH
T ss_pred CceEEEECCCCCCHH
Confidence 346899999999998
No 339
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=25.08 E-value=21 Score=24.84 Aligned_cols=13 Identities=31% Similarity=0.685 Sum_probs=11.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|..|+||+
T Consensus 21 ~ivl~GPSGaGKs 33 (197)
T 3ney_A 21 TLVLIGASGVGRS 33 (197)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECcCCCCHH
Confidence 4789999999998
No 340
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=25.05 E-value=20 Score=25.76 Aligned_cols=14 Identities=21% Similarity=0.591 Sum_probs=12.4
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+||+
T Consensus 51 ~~vll~G~~GtGKT 64 (310)
T 1ofh_A 51 KNILMIGPTGVGKT 64 (310)
T ss_dssp CCEEEECCTTSSHH
T ss_pred ceEEEECCCCCCHH
Confidence 35889999999998
No 341
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=24.80 E-value=20 Score=24.00 Aligned_cols=12 Identities=33% Similarity=0.595 Sum_probs=10.9
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
++++|..|+|||
T Consensus 4 i~l~GpsGaGKs 15 (186)
T 3a00_A 4 IVISGPSGTGKS 15 (186)
T ss_dssp EEEESSSSSSHH
T ss_pred EEEECCCCCCHH
Confidence 578999999998
No 342
>3pzx_A Formate--tetrahydrofolate ligase; HET: TOE; 2.20A {Moorella thermoacetica} SCOP: c.37.1.10 PDB: 1fp7_A 1fpm_A* 3qb6_A* 3qus_A* 3rbo_A* 3sin_A* 1eg7_A
Probab=24.70 E-value=35 Score=27.72 Aligned_cols=70 Identities=10% Similarity=-0.026 Sum_probs=40.2
Q ss_pred HhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHH
Q psy2600 44 FHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPL 120 (158)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~ 120 (158)
+.++...++.++++. +|+++..|+..-..+.+ .+..+++++..|..+..+=+.-|.|-.+|-+.+++.+.
T Consensus 360 ~~NL~kHien~~~fG-----vpvVVaiN~F~tDT~aE--i~~v~~~~~~~G~~~~~~wa~GG~G~~~LA~~Vv~~~~ 429 (557)
T 3pzx_A 360 FANLEKHIENIGKFG-----VPAVVAINAFPTDTEAE--LNLLYELCAKAGAEVALSWAKGGEGGLELARKVLQTLE 429 (557)
T ss_dssp HHHHHHHHHHHHTTT-----CCEEEEEECCTTCCHHH--HHHHHHHCCSSEEEEECHHHHGGGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-----CCeEEEEeCCCCCCHHH--HHHHHHHHHHcCCCEEEEecccchhHHHHHHHHHHHHh
Confidence 344555666666655 99999999987533222 22344455555654332223335666677666666654
No 343
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=24.63 E-value=19 Score=24.08 Aligned_cols=14 Identities=29% Similarity=0.589 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 13 ~~I~l~G~~GsGKs 26 (199)
T 2bwj_A 13 KIIFIIGGPGSGKG 26 (199)
T ss_dssp CEEEEEECTTSSHH
T ss_pred CEEEEECCCCCCHH
Confidence 46899999999998
No 344
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=24.57 E-value=2e+02 Score=20.65 Aligned_cols=62 Identities=11% Similarity=0.151 Sum_probs=38.7
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEE-EEEeCCCCCCCccccHHHHHHHHHHhCCeEEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVA-LVANKGDMEHQRVVTLERHAKLAQSLHLHSFA 99 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~ 99 (158)
.+.+|++.+. +..+......+++.+...... ...+++ +|.|+++-. ...+.+.+.++.+++.
T Consensus 180 aD~viiv~~~-~~~s~~~~~~~~~~l~~~~~~-~~~~~~gvV~N~~~~~-------~~~~~~~~~~g~~v~~ 242 (307)
T 3end_A 180 ADQAVVVTAN-DFDSIYAMNRIIAAVQAKSKN-YKVRLAGCVANRSRAT-------DEVDRFCKETNFRRLA 242 (307)
T ss_dssp CSEEEEEECS-SHHHHHHHHHHHHHHHTTTTT-CCCEEEEEEEESCSCC-------HHHHHHHHHHTCCEEE
T ss_pred CCEEEEEecC-cHHHHHHHHHHHHHHHHhhhc-CCCceEEEEEecCCcH-------HHHHHHHHHcCCCcee
Confidence 4567888765 456777777777777643211 115654 899999831 2455666677776554
No 345
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=24.57 E-value=21 Score=23.79 Aligned_cols=13 Identities=23% Similarity=0.248 Sum_probs=11.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-|++.|.+|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (197)
T 2z0h_A 2 FITFEGIDGSGKS 14 (197)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3789999999998
No 346
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=24.56 E-value=21 Score=25.33 Aligned_cols=14 Identities=29% Similarity=0.560 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+++.|.+|+||+
T Consensus 30 ~~vll~G~~GtGKt 43 (265)
T 2bjv_A 30 KPVLIIGERGTGKE 43 (265)
T ss_dssp SCEEEECCTTSCHH
T ss_pred CCEEEECCCCCcHH
Confidence 46899999999998
No 347
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=24.51 E-value=21 Score=25.49 Aligned_cols=13 Identities=38% Similarity=0.652 Sum_probs=12.0
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-|++.|.+|+|||
T Consensus 6 lIvl~G~pGSGKS 18 (260)
T 3a4m_A 6 LIILTGLPGVGKS 18 (260)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEEcCCCCCHH
Confidence 5899999999998
No 348
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=24.47 E-value=21 Score=25.11 Aligned_cols=12 Identities=50% Similarity=0.947 Sum_probs=11.5
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
++++|.+|+|||
T Consensus 52 ~ll~G~~G~GKT 63 (254)
T 1ixz_A 52 VLLVGPPGVGKT 63 (254)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 899999999998
No 349
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=24.34 E-value=1.5e+02 Score=23.39 Aligned_cols=14 Identities=36% Similarity=0.598 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
--+++.|.+|+||+
T Consensus 78 ~~lLL~GppGtGKT 91 (516)
T 1sxj_A 78 RAAMLYGPPGIGKT 91 (516)
T ss_dssp SEEEEECSTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 46889999999998
No 350
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=24.33 E-value=24 Score=24.50 Aligned_cols=13 Identities=23% Similarity=0.547 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 2 ~I~l~G~~GsGKs 14 (223)
T 2xb4_A 2 NILIFGPNGSGKG 14 (223)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 5889999999998
No 351
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=24.26 E-value=26 Score=23.57 Aligned_cols=14 Identities=36% Similarity=0.612 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+|+|||
T Consensus 16 ~~I~l~G~~GsGKs 29 (203)
T 1ukz_A 16 SVIFVLGGPGAGKG 29 (203)
T ss_dssp EEEEEECSTTSSHH
T ss_pred cEEEEECCCCCCHH
Confidence 46899999999998
No 352
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=24.20 E-value=28 Score=26.50 Aligned_cols=18 Identities=33% Similarity=0.495 Sum_probs=15.1
Q ss_pred cceEEEEEEECCCCCCeE
Q psy2600 14 YEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 14 ~~~~~ki~~~G~~~vgk~ 31 (158)
..-.+|++++|...+||+
T Consensus 29 ~~~~~klLlLG~geSGKS 46 (353)
T 1cip_A 29 AAREVKLLLLGAGESGKS 46 (353)
T ss_dssp --CEEEEEEECSTTSSHH
T ss_pred hcccceEEEEcCCCCCch
Confidence 445899999999999998
No 353
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=24.14 E-value=22 Score=25.13 Aligned_cols=14 Identities=36% Similarity=0.695 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+||+
T Consensus 46 ~~vll~G~~GtGKT 59 (257)
T 1lv7_A 46 KGVLMVGPPGTGKT 59 (257)
T ss_dssp CEEEEECCTTSCHH
T ss_pred CeEEEECcCCCCHH
Confidence 35899999999998
No 354
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=24.05 E-value=22 Score=24.53 Aligned_cols=14 Identities=36% Similarity=0.722 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|++.|.+++|||
T Consensus 6 ~~I~l~G~~GsGKs 19 (217)
T 3be4_A 6 HNLILIGAPGSGKG 19 (217)
T ss_dssp CEEEEEECTTSSHH
T ss_pred eEEEEECCCCCCHH
Confidence 46899999999998
No 355
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=23.98 E-value=25 Score=24.75 Aligned_cols=13 Identities=46% Similarity=0.828 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.++++|..|+|||
T Consensus 29 ~i~l~G~~GsGKS 41 (246)
T 2bbw_A 29 RAVILGPPGSGKG 41 (246)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 356
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=23.87 E-value=19 Score=24.79 Aligned_cols=13 Identities=46% Similarity=0.751 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 7 ~I~l~G~~GsGKs 19 (222)
T 1zak_A 7 KVMISGAPASGKG 19 (222)
T ss_dssp CEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 357
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=23.84 E-value=34 Score=26.06 Aligned_cols=18 Identities=33% Similarity=0.276 Sum_probs=15.8
Q ss_pred cceEEEEEEECCCCCCeE
Q psy2600 14 YEIQLKVVLLGDPSCGKI 31 (158)
Q Consensus 14 ~~~~~ki~~~G~~~vgk~ 31 (158)
..-.+|++++|..++||+
T Consensus 6 ~~~~~k~lllG~~~sGKs 23 (354)
T 2xtz_A 6 GIHIRKLLLLGAGESGKS 23 (354)
T ss_dssp CCEEEEEEEECSTTSSHH
T ss_pred CCCceeEEEECCCCCcHH
Confidence 456789999999999998
No 358
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=23.76 E-value=20 Score=24.32 Aligned_cols=13 Identities=31% Similarity=0.314 Sum_probs=12.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 12 ~I~l~G~~GsGKS 24 (212)
T 2wwf_A 12 FIVFEGLDRSGKS 24 (212)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEEcCCCCCHH
Confidence 5899999999998
No 359
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=23.47 E-value=1.3e+02 Score=18.28 Aligned_cols=46 Identities=7% Similarity=-0.066 Sum_probs=23.9
Q ss_pred cEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHHHHHHH
Q psy2600 64 TYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121 (158)
Q Consensus 64 ~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~lf~~l~~~~~~ 121 (158)
+|+|++....+. ... ..+...|...|-.- ..+..++...+...+..
T Consensus 83 ~pii~ls~~~~~--------~~~-~~~~~~g~~~~l~k---p~~~~~L~~~i~~~~~~ 128 (147)
T 2zay_A 83 IPVIALSGRATA--------KEE-AQLLDMGFIDFIAK---PVNAIRLSARIKRVLKL 128 (147)
T ss_dssp SCEEEEESSCCH--------HHH-HHHHHHTCSEEEES---SCCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCH--------HHH-HHHHhCCCCEEEeC---CCCHHHHHHHHHHHHHH
Confidence 788877765541 122 22234565544433 33566666666555543
No 360
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=23.47 E-value=22 Score=24.04 Aligned_cols=13 Identities=23% Similarity=0.399 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-+++.|.+|+|||
T Consensus 47 ~~ll~G~~G~GKT 59 (250)
T 1njg_A 47 AYLFSGTRGVGKT 59 (250)
T ss_dssp EEEEECSTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 4789999999998
No 361
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=23.46 E-value=1.7e+02 Score=20.46 Aligned_cols=41 Identities=10% Similarity=-0.025 Sum_probs=28.7
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGD 74 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~D 74 (158)
|.+|++...+ ..+...+...++.+...... .++.+|.|+++
T Consensus 168 D~vivv~~~~-~~s~~~~~~~~~~l~~~~~~---~~~~vv~N~~~ 208 (267)
T 3k9g_A 168 DYVIIPMTAE-KWAVESLDLFNFFVRKLNLF---LPIFLIITRFK 208 (267)
T ss_dssp SEEEEEEESC-TTHHHHHHHHHHHHHTTTCC---CCEEEEEEEEC
T ss_pred CeEEEEeCCC-hHHHHHHHHHHHHHHHHhcc---CCEEEEEeccc
Confidence 5688888764 55667676777777655432 67789999995
No 362
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=23.26 E-value=83 Score=25.35 Aligned_cols=54 Identities=20% Similarity=0.353 Sum_probs=33.6
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|+.++|.+++||+ +++||-.-. +..++...+++.+.....- -..++|++-.|.+
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~iG-eR~~Ev~~~~~~~~~~g~m---~~tvvV~atad~p 231 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVICIYVAIG-QKQSTVAGVVETLRQHDAL---DYTIVVTASASEP 231 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEEES-CCHHHHHHHHHHHHHTTCS---TTEEEEEECTTSC
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEECC-CcchHHHHHHHHHhhCCCc---ceeEEEEECCCCC
Confidence 5689999999998 333444333 3445566677777743321 2346677777765
No 363
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=23.22 E-value=24 Score=29.01 Aligned_cols=16 Identities=25% Similarity=0.239 Sum_probs=14.0
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
-...|.++|.+|+|||
T Consensus 37 ~~~~VaivG~pnvGKS 52 (592)
T 1f5n_A 37 PMVVVAIVGLYRTGKS 52 (592)
T ss_dssp BEEEEEEEEBTTSSHH
T ss_pred CCcEEEEECCCCCCHH
Confidence 3578999999999998
No 364
>3rpf_A Molybdopterin synthase catalytic subunit; MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=23.18 E-value=65 Score=21.38 Aligned_cols=37 Identities=16% Similarity=0.269 Sum_probs=28.4
Q ss_pred EEECCCCCCeEEEEEEECCC--hhHHhhHHHHHHHHhhh
Q psy2600 21 VLLGDPSCGKIVIFMYDITS--GQSFHSIPTWVDLFHLN 57 (158)
Q Consensus 21 ~~~G~~~vgk~~i~v~d~~~--~~s~~~~~~~~~~~~~~ 57 (158)
-=+|...+|+.+++|.-.+. .+.|+.....+++++..
T Consensus 80 HR~G~l~~Ge~~v~VaVss~HR~~Af~A~~~~id~lK~~ 118 (148)
T 3rpf_A 80 HSLGDVLIGQSSFLCVSMGKNRKNALELYENFIEDFKHN 118 (148)
T ss_dssp EEEEEEETTCEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred EEEcccCCCCEEEEEEEEcccHHHHHHHHHHHHHHHHhc
Confidence 35788889998776665544 56899888999999865
No 365
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=22.98 E-value=24 Score=23.47 Aligned_cols=14 Identities=43% Similarity=0.584 Sum_probs=12.3
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-+++.|.+|+|||
T Consensus 14 ~~i~l~G~~GsGKs 27 (186)
T 2yvu_A 14 IVVWLTGLPGSGKT 27 (186)
T ss_dssp EEEEEECCTTSSHH
T ss_pred cEEEEEcCCCCCHH
Confidence 35889999999998
No 366
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=22.94 E-value=23 Score=25.24 Aligned_cols=16 Identities=38% Similarity=0.557 Sum_probs=13.6
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
..-.+++.|.+|+||+
T Consensus 63 ~~~~vLl~G~~GtGKT 78 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKT 78 (272)
T ss_dssp SEEEEEEECSTTSSHH
T ss_pred CCeEEEEECCCCCcHH
Confidence 3457899999999998
No 367
>4ap8_A Molybdopterin synthase catalytic subunit; transferase; 2.78A {Homo sapiens}
Probab=22.87 E-value=54 Score=21.42 Aligned_cols=35 Identities=14% Similarity=0.201 Sum_probs=26.9
Q ss_pred ECCCCCCeEEEEEEECCC--hhHHhhHHHHHHHHhhh
Q psy2600 23 LGDPSCGKIVIFMYDITS--GQSFHSIPTWVDLFHLN 57 (158)
Q Consensus 23 ~G~~~vgk~~i~v~d~~~--~~s~~~~~~~~~~~~~~ 57 (158)
+|...+|+.+++|.-.+. .+.|+.....+++++..
T Consensus 88 ~G~l~~ge~~v~Vav~s~HR~~Af~A~~~~id~lK~~ 124 (135)
T 4ap8_A 88 LGLVPVSEASIIIAVSSAHRAASLEAVSYAIDTLKAK 124 (135)
T ss_dssp CEEEETTSEEEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred cccccCCCeEEEEEEEccCHHHHHHHHHHHHHHHhhc
Confidence 688889988776665443 57899988889998865
No 368
>2wp4_A Molybdopterin-converting factor subunit 2 1; transferase; 2.49A {Mycobacterium tuberculosis}
Probab=22.81 E-value=53 Score=21.75 Aligned_cols=37 Identities=11% Similarity=0.252 Sum_probs=28.6
Q ss_pred EECCCCCCeEEEEEEECCC--hhHHhhHHHHHHHHhhhc
Q psy2600 22 LLGDPSCGKIVIFMYDITS--GQSFHSIPTWVDLFHLNR 58 (158)
Q Consensus 22 ~~G~~~vgk~~i~v~d~~~--~~s~~~~~~~~~~~~~~~ 58 (158)
=+|...+|+.+++|.-.+. .+.|+.....+++++..-
T Consensus 90 R~G~l~vGe~~v~VaVss~HR~~Af~A~~~~iD~lK~~a 128 (147)
T 2wp4_A 90 RTGELQIGDAAVVIGASAPHRAEAFDAARMCIELLKQEV 128 (147)
T ss_dssp ECEEECTTCEEEEEEEEESSHHHHHHHHHHHHHHHHHHC
T ss_pred EEcccCCCCeEEEEEEeccCHHHHHHHHHHHHHHHHhhC
Confidence 3788899999777665544 568999999999998663
No 369
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=22.59 E-value=24 Score=24.48 Aligned_cols=13 Identities=31% Similarity=0.460 Sum_probs=11.6
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.++++|..|+|||
T Consensus 25 ~~~lvGpsGsGKS 37 (218)
T 1z6g_A 25 PLVICGPSGVGKG 37 (218)
T ss_dssp CEEEECSTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 3789999999998
No 370
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=22.57 E-value=54 Score=24.24 Aligned_cols=13 Identities=31% Similarity=0.501 Sum_probs=11.7
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-+.++|..|+|||
T Consensus 104 vi~lvG~nGsGKT 116 (304)
T 1rj9_A 104 VVLVVGVNGVGKT 116 (304)
T ss_dssp EEEEECSTTSSHH
T ss_pred EEEEECCCCCcHH
Confidence 5789999999998
No 371
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=22.46 E-value=1e+02 Score=22.06 Aligned_cols=13 Identities=31% Similarity=0.721 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+||+
T Consensus 48 ~~ll~G~~G~GKT 60 (327)
T 1iqp_A 48 HLLFAGPPGVGKT 60 (327)
T ss_dssp EEEEESCTTSSHH
T ss_pred eEEEECcCCCCHH
Confidence 3899999999998
No 372
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=22.41 E-value=24 Score=25.47 Aligned_cols=14 Identities=36% Similarity=0.660 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
--+++.|.+|+||+
T Consensus 55 ~~vll~Gp~GtGKT 68 (297)
T 3b9p_A 55 KGLLLFGPPGNGKT 68 (297)
T ss_dssp SEEEEESSSSSCHH
T ss_pred CeEEEECcCCCCHH
Confidence 36899999999998
No 373
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=22.33 E-value=25 Score=26.68 Aligned_cols=16 Identities=38% Similarity=0.571 Sum_probs=13.7
Q ss_pred eEEEEEEECCCCCCeE
Q psy2600 16 IQLKVVLLGDPSCGKI 31 (158)
Q Consensus 16 ~~~ki~~~G~~~vgk~ 31 (158)
-++|++++|...+||+
T Consensus 4 ~~~klLLLG~geSGKS 19 (340)
T 4fid_A 4 KPITVMLLGSGESGKS 19 (340)
T ss_dssp CCEEEEEEECTTSSHH
T ss_pred CcceEEEECCCCCcHH
Confidence 3689999999999998
No 374
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=22.26 E-value=84 Score=23.93 Aligned_cols=13 Identities=23% Similarity=0.463 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-+.++|..|+|||
T Consensus 159 vi~lvG~nGsGKT 171 (359)
T 2og2_A 159 VIMIVGVNGGGKT 171 (359)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEEcCCCChHH
Confidence 5789999999998
No 375
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=22.02 E-value=29 Score=27.36 Aligned_cols=13 Identities=46% Similarity=0.915 Sum_probs=11.9
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.++++|.+|+||+
T Consensus 203 ~~LL~G~pG~GKT 215 (468)
T 3pxg_A 203 NPVLIGEPGVGKT 215 (468)
T ss_dssp EEEEESCTTTTTH
T ss_pred CeEEECCCCCCHH
Confidence 5789999999998
No 376
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=21.86 E-value=22 Score=24.02 Aligned_cols=13 Identities=38% Similarity=0.434 Sum_probs=12.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.|++.|.+|+|||
T Consensus 11 ~I~l~G~~GsGKs 23 (215)
T 1nn5_A 11 LIVLEGVDRAGKS 23 (215)
T ss_dssp EEEEEESTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 5899999999998
No 377
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=21.82 E-value=30 Score=23.63 Aligned_cols=14 Identities=43% Similarity=0.574 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..+.++|..|+|||
T Consensus 23 ~~v~I~G~sGsGKS 36 (208)
T 3c8u_A 23 QLVALSGAPGSGKS 36 (208)
T ss_dssp EEEEEECCTTSCTH
T ss_pred eEEEEECCCCCCHH
Confidence 46889999999998
No 378
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=21.78 E-value=26 Score=23.95 Aligned_cols=12 Identities=50% Similarity=0.670 Sum_probs=11.1
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+.++|..|+|||
T Consensus 23 ~~l~GpnGsGKS 34 (207)
T 1znw_A 23 VVLSGPSAVGKS 34 (207)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCCCCHH
Confidence 679999999998
No 379
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=21.66 E-value=27 Score=25.55 Aligned_cols=14 Identities=36% Similarity=0.586 Sum_probs=12.5
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-+++.|.+|+|||
T Consensus 34 ~livl~G~sGsGKS 47 (287)
T 1gvn_B 34 TAFLLGGQPGSGKT 47 (287)
T ss_dssp EEEEEECCTTSCTH
T ss_pred eEEEEECCCCCCHH
Confidence 46889999999998
No 380
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=21.41 E-value=1.4e+02 Score=21.29 Aligned_cols=41 Identities=10% Similarity=0.147 Sum_probs=26.1
Q ss_pred eEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEE-EEEeCCCCC
Q psy2600 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVA-LVANKGDME 76 (158)
Q Consensus 30 k~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~pii-lv~nK~Dl~ 76 (158)
+.+|+|.... ..+...+...++.+.+.. .+++ +|.|++|..
T Consensus 216 D~vilVv~~~-~~~~~~~~~~~~~l~~~~-----~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 216 GNVVYVVNSE-NNNKDEVKKGKELIEATG-----AKLLGVVLNRMPKD 257 (271)
T ss_dssp CEEEEEEETT-SCCHHHHHHHHHHHHTTT-----CEEEEEEEEEECC-
T ss_pred CEEEEEEeCC-CCcHHHHHHHHHHHHhCC-----CCEEEEEEeCCcCC
Confidence 4478887764 345566666666666433 5555 889999853
No 381
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=21.14 E-value=99 Score=24.16 Aligned_cols=13 Identities=31% Similarity=0.342 Sum_probs=11.1
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|..|+|||
T Consensus 100 vi~i~G~~GsGKT 112 (425)
T 2ffh_A 100 LWFLVGLQGSGKT 112 (425)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCCCCHH
Confidence 4667899999998
No 382
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=21.13 E-value=24 Score=25.79 Aligned_cols=14 Identities=29% Similarity=0.349 Sum_probs=11.7
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
.-+++.|.+|+|||
T Consensus 37 ~~lLl~GppGtGKT 50 (293)
T 3t15_A 37 LILGIWGGKGQGKS 50 (293)
T ss_dssp SEEEEEECTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 34677799999998
No 383
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=20.75 E-value=28 Score=25.18 Aligned_cols=14 Identities=29% Similarity=0.458 Sum_probs=12.7
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+||+
T Consensus 48 ~~~ll~G~~GtGKt 61 (311)
T 4fcw_A 48 GSFLFLGPTGVGKT 61 (311)
T ss_dssp EEEEEESCSSSSHH
T ss_pred eEEEEECCCCcCHH
Confidence 46899999999998
No 384
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=20.68 E-value=2e+02 Score=21.18 Aligned_cols=56 Identities=16% Similarity=0.201 Sum_probs=37.1
Q ss_pred eEEEEEEECCCCC---------CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCC
Q psy2600 16 IQLKVVLLGDPSC---------GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75 (158)
Q Consensus 16 ~~~ki~~~G~~~v---------gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl 75 (158)
-..|++++++.-. +|.+|++-|+++....+++..+++.+..... .++++|.-.-|.
T Consensus 58 ~~mri~~iSD~H~~~~~l~i~~~D~vi~aGDl~~~g~~~e~~~~~~~L~~l~~----~~v~~V~GNHD~ 122 (296)
T 3rl5_A 58 GHTRFVCISDTRSRTDGIQMPYGDILLHTGDFTELGLPSEVKKFNDWLGNLPY----EYKIVIAGNHEL 122 (296)
T ss_dssp TEEEEEEEBCCTTCCTTCCCCSCSEEEECSCCSSSCCHHHHHHHHHHHHTSCC----SEEEECCCTTCG
T ss_pred CCeEEEEEeeCCCCcchhccCCCCEEEECCcccCCCCHHHHHHHHHHHHhCCC----CeEEEEcCCccc
Confidence 3478888887653 5789999999986655555555555554321 456666666775
No 385
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=20.58 E-value=27 Score=25.62 Aligned_cols=13 Identities=23% Similarity=0.509 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
.+++.|.+|+|||
T Consensus 39 ~lll~G~~GtGKT 51 (324)
T 1l8q_A 39 PIFIYGSVGTGKT 51 (324)
T ss_dssp SEEEECSSSSSHH
T ss_pred eEEEECCCCCcHH
Confidence 4789999999998
No 386
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=20.58 E-value=28 Score=24.35 Aligned_cols=13 Identities=15% Similarity=0.225 Sum_probs=10.2
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-++++|..|+||+
T Consensus 18 ii~l~GpsGsGKS 30 (219)
T 1s96_A 18 LYIVSAPSGAGKS 30 (219)
T ss_dssp EEEEECCTTSCHH
T ss_pred EEEEECCCCCCHH
Confidence 3568888888887
No 387
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=20.56 E-value=1.1e+02 Score=21.90 Aligned_cols=12 Identities=33% Similarity=0.697 Sum_probs=11.3
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
+++.|.+|+||+
T Consensus 45 ~ll~G~~G~GKt 56 (323)
T 1sxj_B 45 MIISGMPGIGKT 56 (323)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECcCCCCHH
Confidence 889999999998
No 388
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=20.53 E-value=29 Score=24.77 Aligned_cols=12 Identities=25% Similarity=0.501 Sum_probs=11.2
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
++++|.+|+|||
T Consensus 4 i~I~G~~GSGKS 15 (253)
T 2ze6_A 4 HLIYGPTCSGKT 15 (253)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCCcCHH
Confidence 689999999998
No 389
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=20.50 E-value=1.7e+02 Score=22.86 Aligned_cols=14 Identities=36% Similarity=0.686 Sum_probs=12.6
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
-.+++.|.+|+||+
T Consensus 51 ~~vLL~GppGtGKT 64 (447)
T 3pvs_A 51 HSMILWGPPGTGKT 64 (447)
T ss_dssp CEEEEECSTTSSHH
T ss_pred cEEEEECCCCCcHH
Confidence 36899999999998
No 390
>3oaa_A ATP synthase subunit alpha; rossmann fold, hydrolase, hydrolase-transport PROT complex; HET: ANP ADP; 3.26A {Escherichia coli DH1} PDB: 2a7u_A
Probab=20.33 E-value=85 Score=25.36 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=32.7
Q ss_pred EEEEECCCCCCeE--------------EEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCC
Q psy2600 19 KVVLLGDPSCGKI--------------VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76 (158)
Q Consensus 19 ki~~~G~~~vgk~--------------~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 76 (158)
|+.++|..++||+ +++||-.-. +...+...+++.+.....- ...++|.+-.|.+
T Consensus 164 R~~Ifg~~g~GKT~l~l~~I~n~~~~dv~~V~~~IG-eR~~ev~e~~~~l~~~g~m---~~tvvV~atad~p 231 (513)
T 3oaa_A 164 RELIIGDRQTGKTALAIDAIINQRDSGIKCIYVAIG-QKASTISNVVRKLEEHGAL---ANTIVVVATASES 231 (513)
T ss_dssp BCEEEESSSSSHHHHHHHHHHTTSSSSCEEEEEEES-CCHHHHHHHHHHHHHHSCS---TTEEEEEECTTSC
T ss_pred EEEeecCCCCCcchHHHHHHHhhccCCceEEEEEec-CChHHHHHHHHHHhhcCcc---cceEEEEECCCCC
Confidence 5679999999998 223343322 3445566677777654321 2346777777754
No 391
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=20.26 E-value=38 Score=25.23 Aligned_cols=12 Identities=25% Similarity=0.412 Sum_probs=9.9
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
|++.|..|||||
T Consensus 51 IAIaGKGGVGKT 62 (314)
T 3fwy_A 51 FAVYGKGGIGKS 62 (314)
T ss_dssp EEEECSTTSSHH
T ss_pred EEEECCCccCHH
Confidence 455699999998
No 392
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=20.22 E-value=1.1e+02 Score=24.73 Aligned_cols=13 Identities=23% Similarity=0.519 Sum_probs=11.8
Q ss_pred EEEEECCCCCCeE
Q psy2600 19 KVVLLGDPSCGKI 31 (158)
Q Consensus 19 ki~~~G~~~vgk~ 31 (158)
-+.++|..|+|||
T Consensus 295 VI~LVGpNGSGKT 307 (503)
T 2yhs_A 295 VILMVGVNGVGKT 307 (503)
T ss_dssp EEEEECCTTSSHH
T ss_pred EEEEECCCcccHH
Confidence 4789999999998
No 393
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=20.18 E-value=48 Score=25.14 Aligned_cols=23 Identities=22% Similarity=0.380 Sum_probs=18.7
Q ss_pred EEEEEECCCCCCeE---------------EEEEEECCC
Q psy2600 18 LKVVLLGDPSCGKI---------------VIFMYDITS 40 (158)
Q Consensus 18 ~ki~~~G~~~vgk~---------------~i~v~d~~~ 40 (158)
..++++|.+|+||| -++++|...
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~ 73 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPER 73 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 46789999999998 567788754
No 394
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=20.14 E-value=32 Score=22.96 Aligned_cols=14 Identities=21% Similarity=0.399 Sum_probs=12.7
Q ss_pred EEEEEECCCCCCeE
Q psy2600 18 LKVVLLGDPSCGKI 31 (158)
Q Consensus 18 ~ki~~~G~~~vgk~ 31 (158)
..|.+.|.+|+|||
T Consensus 9 ~~I~i~G~~GsGKS 22 (203)
T 1uf9_A 9 IIIGITGNIGSGKS 22 (203)
T ss_dssp EEEEEEECTTSCHH
T ss_pred eEEEEECCCCCCHH
Confidence 46899999999998
No 395
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=20.08 E-value=2.1e+02 Score=19.32 Aligned_cols=61 Identities=5% Similarity=0.036 Sum_probs=36.7
Q ss_pred CeEEEEEEECCChhHHhhHHHHHHHHhhhcCCCCCcEEEEEEeCCCCCCCccccHHHHHHHHHHhCCeEE
Q psy2600 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSF 98 (158)
Q Consensus 29 gk~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~ 98 (158)
.+.+|++... +..+...+...++.+.+... ..+-+|.|+++..... . ....+.+.++.+++
T Consensus 134 ad~vi~v~~~-~~~~~~~~~~~~~~l~~~~~----~~~~vv~N~~~~~~~~-~---~~~~~~~~~~~~~~ 194 (237)
T 1g3q_A 134 GEEALLVTNP-EISCLTDTMKVGIVLKKAGL----AILGFVLNRYGRSDRD-I---PPEAAEDVMEVPLL 194 (237)
T ss_dssp CSEEEEEECS-CHHHHHHHHHHHHHHHHTTC----EEEEEEEEEETSCTTC-C---CHHHHHHHHCSCEE
T ss_pred CCeEEEEecC-CcccHHHHHHHHHHHHhCCC----ceEEEEEecCCcccch-h---HHHHHHHHhCccce
Confidence 3557788765 45677777777777765421 4567899999864322 1 22334455676644
No 396
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=20.02 E-value=30 Score=24.82 Aligned_cols=12 Identities=50% Similarity=0.947 Sum_probs=11.6
Q ss_pred EEEECCCCCCeE
Q psy2600 20 VVLLGDPSCGKI 31 (158)
Q Consensus 20 i~~~G~~~vgk~ 31 (158)
++++|.+|+|||
T Consensus 76 vll~Gp~GtGKT 87 (278)
T 1iy2_A 76 VLLVGPPGVGKT 87 (278)
T ss_dssp EEEECCTTSSHH
T ss_pred EEEECCCcChHH
Confidence 899999999998
Done!