RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2600
(158 letters)
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET:
G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Length = 178
Score = 78.4 bits (194), Expect = 4e-19
Identities = 31/77 (40%), Positives = 46/77 (59%), Gaps = 1/77 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
V+ +YDIT+ QSF ++ W + ++ +S T VALV NK D+EH R + E+H +
Sbjct: 83 VLLVYDITNYQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHMRTIKPEKHLRFC 142
Query: 91 QSLHLHSFAVSARTGDN 107
Q S VSA+TGD+
Sbjct: 143 QENGFSSHFVSAKTGDS 159
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP
binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB:
3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Length = 179
Score = 71.4 bits (176), Expect = 2e-16
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT+ SFH W+D + + + + LV NK D+ +R V+ E + A+
Sbjct: 90 AVVVYDITNTNSFHQTSKWID--DVRTERGSDVIIMLVGNKTDLSDKRQVSTEEGERKAK 147
Query: 92 SLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 148 ELNVMFIETSAKAGYN 163
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking,
protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP:
c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Length = 170
Score = 71.0 bits (175), Expect = 2e-16
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT SF + WV L + + +V NK D+E +R V+++ A+
Sbjct: 82 AILVYDITDEDSFQKVKNWVK--ELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE 139
Query: 92 SLHLHSFAVSARTGDN 107
S+ + SA+
Sbjct: 140 SVGAKHYHTSAKQNKG 155
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase,
rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus
musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Length = 170
Score = 70.2 bits (173), Expect = 4e-16
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT ++F ++ WV L + VA+ NK D+ R V A
Sbjct: 82 AIIVYDITKEETFSTLKNWVR--ELRQHGPPSIVVAIAGNKCDLTDVREVMERDAKDYAD 139
Query: 92 SLHLHSFAVSARTGDN 107
S+H SA+ N
Sbjct: 140 SIHAIFVETSAKNAIN 155
>3bbp_A RAB-6, RAS-related protein RAB-6A; golgi complex, GRIP domain, RAB
GTPase, ARL GTPase, golgin, RAB effector, clAsp protein;
HET: GTP; 3.00A {Homo sapiens}
Length = 211
Score = 71.2 bits (175), Expect = 4e-16
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT+ SF W+D + + + + LV NK D+ +R V++E + A+
Sbjct: 92 AVVVYDITNVNSFQQTTKWID--DVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK 149
Query: 92 SLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 150 ELNVMFIETSAKAGYN 165
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle
transport, hydrolase; HET: GDP; 1.55A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A*
2gzh_A* 2d7c_A* 3bfk_A*
Length = 199
Score = 70.8 bits (174), Expect = 5e-16
Identities = 18/76 (23%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI ++ ++ W+ L + + + LV NK D+ H R V + A+
Sbjct: 81 ALLVYDIAKHLTYENVERWLK--ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 138
Query: 92 SLHLHSFAVSARTGDN 107
+L SA N
Sbjct: 139 KNNLSFIETSALDSTN 154
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 2.30A {Homo sapiens}
Length = 193
Score = 69.9 bits (172), Expect = 8e-16
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++D+T Q++ + W+ L + V LV NK D+ R V E A+
Sbjct: 101 ALLVFDLTKHQTYAVVERWLK--ELYDHAEATIVVMLVGNKSDLSQAREVPTEEARMFAE 158
Query: 92 SLHLHSFAVSARTGDN 107
+ L SA N
Sbjct: 159 NNGLLFLETSALDSTN 174
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular
trafficking, GTP-binding, lipoprotein, prenylation,
protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP:
c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Length = 191
Score = 69.6 bits (171), Expect = 1e-15
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI ++ ++ W+ L + + + LV NK D+ H R V + A+
Sbjct: 105 ALLVYDIAKHLTYENVERWLK--ELRDHADSNIVIMLVGNKSDLRHLRAVPTDEARAFAE 162
Query: 92 SLHLHSFAVSARTGDN 107
L SA N
Sbjct: 163 KNGLSFIETSALDSTN 178
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase
nucleotide free complex; 2.00A {Mus musculus} SCOP:
c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Length = 183
Score = 69.5 bits (171), Expect = 1e-15
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YDIT+ +SF +I W + ++ +S ++ NK D+ +R V+ ER KLA
Sbjct: 84 IMLVYDITNEKSFDNIRNW--IRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLAL 141
Query: 92 SLHLHSFAVSARTGDN 107
+ SA+ N
Sbjct: 142 DYGIKFMETSAKANIN 157
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular
transport, endocytosis, prenylation, protein transport,
transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8
PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Length = 186
Score = 69.5 bits (171), Expect = 1e-15
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS ++++++ W L +S + L NK D++ R VT ++ AQ
Sbjct: 86 ALLVYDITSRETYNALTNW--LTDARMLASQNIVIILCGNKKDLDADREVTFLEASRFAQ 143
Query: 92 SLHLHSFAVSARTGDN 107
L SA TG+N
Sbjct: 144 ENELMFLETSALTGEN 159
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, unknown
function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 180
Score = 69.1 bits (170), Expect = 1e-15
Identities = 26/76 (34%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
++ +YD+T+ SF +I W L ++ + + L+ NK D H+RVV E KLA+
Sbjct: 87 LLLLYDVTNKASFDNIQAW--LTEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKLAK 144
Query: 92 SLHLHSFAVSARTGDN 107
L SA+TG N
Sbjct: 145 EYGLPFMETSAKTGLN 160
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Length = 189
Score = 69.2 bits (170), Expect = 1e-15
Identities = 26/76 (34%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ MYDI + +SF ++ W + S V LV NK D+E +RVV E +LA
Sbjct: 98 FLLMYDIANQESFAAVQDW--ATQIKTYSWDNAQVILVGNKCDLEDERVVPAEDGRRLAD 155
Query: 92 SLHLHSFAVSARTGDN 107
L F SA+ N
Sbjct: 156 DLGFEFFEASAKENIN 171
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A*
3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Length = 206
Score = 69.6 bits (171), Expect = 1e-15
Identities = 21/76 (27%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+ + W L ++R +++ LV NK D++ +RVV + + A
Sbjct: 84 IIIVYDVTDQESFNGVKMW--LQEIDRYATSTVLKLLVGNKCDLKDKRVVEYDVAKEFAD 141
Query: 92 SLHLHSFAVSARTGDN 107
+ + SA N
Sbjct: 142 ANKMPFLETSALDSTN 157
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural
genomics, structural genomics consortium, SGC, protein
transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8
PDB: 1z0a_A*
Length = 191
Score = 69.2 bits (170), Expect = 1e-15
Identities = 23/76 (30%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT ++F+ + +W L + SS+ + L+ NK D+E +R V E A+
Sbjct: 97 ALLVYDITRRETFNHLTSW--LEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGEAFAR 154
Query: 92 SLHLHSFAVSARTGDN 107
L SA+T N
Sbjct: 155 EHGLIFMETSAKTACN 170
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein,
GDPNP, SLP2A, exophil GTP-binding, lipoprotein,
membrane, methylation; HET: GNP; 1.80A {Mus musculus}
PDB: 2iey_A* 2if0_A* 2zet_A*
Length = 195
Score = 69.2 bits (170), Expect = 1e-15
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 1/76 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++D+T+ QSF ++ W+ ++ S P V L NK D+E QR V E +LA+
Sbjct: 97 FLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIV-LCGNKSDLEDQRAVKEEEARELAE 155
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA G N
Sbjct: 156 KYGIPYFETSAANGTN 171
Score = 28.7 bits (65), Expect = 0.59
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 11 NDNYEIQLKVVLLGDPSCGK 30
+ +Y+ +K + LGD GK
Sbjct: 5 DGDYDYLIKFLALGDSGVGK 24
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB
protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus}
SCOP: c.37.1.8
Length = 203
Score = 69.6 bits (171), Expect = 1e-15
Identities = 30/76 (39%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I MYDIT+ +SF+++ W + S V LV NK DME +RVV+ ER +LA
Sbjct: 84 FILMYDITNEESFNAVQDW--STQIKTYSWDNAQVLLVGNKCDMEDERVVSSERGRQLAD 141
Query: 92 SLHLHSFAVSARTGDN 107
L F SA+ N
Sbjct: 142 HLGFEFFEASAKDNIN 157
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.20A {Homo sapiens}
Length = 200
Score = 69.2 bits (170), Expect = 2e-15
Identities = 25/76 (32%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDITS ++++S+ W L +S V L NK D++ +R VT ++ AQ
Sbjct: 101 ALLVYDITSRETYNSLAAW--LTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQ 158
Query: 92 SLHLHSFAVSARTGDN 107
L SA TG+N
Sbjct: 159 ENELMFLETSALTGEN 174
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural
genomics, structural genomics consortium, SGC, signaling
protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Length = 201
Score = 69.2 bits (170), Expect = 2e-15
Identities = 22/76 (28%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I YDIT +SF +P W+ + + +S LV NK D+ +R V+ +R + ++
Sbjct: 102 LILTYDITCEESFRCLPEWLR--EIEQYASNKVITVLVGNKIDLAERREVSQQRAEEFSE 159
Query: 92 SLHLHSFAVSARTGDN 107
+ ++ SA+ DN
Sbjct: 160 AQDMYYLETSAKESDN 175
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens}
SCOP: c.37.1.8
Length = 192
Score = 69.2 bits (170), Expect = 2e-15
Identities = 21/76 (27%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT SF+++ WV L +A+ NK D+ R V L+ + A+
Sbjct: 99 AVIVYDITKQDSFYTLKKWVK--ELKEHGPENIVMAIAGNKCDLSDIREVPLKDAKEYAE 156
Query: 92 SLHLHSFAVSARTGDN 107
S+ SA+ N
Sbjct: 157 SIGAIVVETSAKNAIN 172
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular
trafficking, protein transport; HET: GDP; 2.15A {Homo
sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Length = 179
Score = 68.8 bits (169), Expect = 2e-15
Identities = 23/76 (30%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT +++ + +W+ ++ T + L+ NK D+E QR VT E + A+
Sbjct: 91 ALMVYDITRRSTYNHLSSWLT--DARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFAE 148
Query: 92 SLHLHSFAVSARTGDN 107
L SA+TG+N
Sbjct: 149 ENGLLFLEASAKTGEN 164
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein
transport-protein binding compl; HET: GTP; 2.18A {Homo
sapiens}
Length = 196
Score = 68.8 bits (169), Expect = 2e-15
Identities = 23/76 (30%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W L ++R +S LV NK D+ ++VV + A
Sbjct: 92 IIVVYDVTDQESFNNVKQW--LQEIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 149
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 150 SLGIPFLETSAKNATN 165
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics
consortium, SGC, cell GTP-binding, lipoprotein,
membrane, methylation; HET: GDP; 1.90A {Homo sapiens}
Length = 191
Score = 68.8 bits (169), Expect = 2e-15
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I MYDIT+ +SF+++ W + S V LV NK DME +RVV E+ LA+
Sbjct: 99 FILMYDITNEESFNAVQDW--ATQIKTYSWDNAQVILVGNKCDMEEERVVPTEKGQLLAE 156
Query: 92 SLHLHSFAVSARTGDN 107
L F SA+ +
Sbjct: 157 QLGFDFFEASAKENIS 172
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding,
guanine-nucleotide exchang GDI-displacement factor;
2.85A {Homo sapiens}
Length = 199
Score = 68.4 bits (168), Expect = 3e-15
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T +SF+++ W+ ++R +S LV NK D+ ++VV + A
Sbjct: 109 IIVVYDVTDQESFNNVKQWLQ--EIDRYASENVNKLLVGNKCDLTTKKVVDYTTAKEFAD 166
Query: 92 SLHLHSFAVSARTGDN 107
SL + SA+ N
Sbjct: 167 SLGIPFLETSAKNATN 182
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics,
structural genomics consortium, SGC, protein transport;
HET: GDP; 2.10A {Homo sapiens}
Length = 192
Score = 68.4 bits (168), Expect = 3e-15
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT ++F +P W + +++ +S + LV NK D E R +T ++ K AQ
Sbjct: 102 IILVYDITKKETFDDLPKW--MKMIDKYASEDAELLLVGNKLDCETDREITRQQGEKFAQ 159
Query: 92 SLHLHSFA-VSARTGDN 107
+ F SA+ N
Sbjct: 160 QITGMRFCEASAKDNFN 176
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB:
2iez_A*
Length = 217
Score = 68.5 bits (168), Expect = 4e-15
Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ M+D+TS QSF ++ W+ N P V L+ NK D+ QR V + +LA
Sbjct: 111 FLLMFDLTSQQSFLNVRNWMSQLQANAYCENPDIV-LIGNKADLPDQREVNERQARELAD 169
Query: 92 SLHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 170 KYGIPYFETSAATGQN 185
Score = 29.2 bits (66), Expect = 0.44
Identities = 7/25 (28%), Positives = 15/25 (60%)
Query: 6 MLNLHNDNYEIQLKVVLLGDPSCGK 30
++ + +Y+ +K++ LGD GK
Sbjct: 14 LVPRGSGDYDYLIKLLALGDSGVGK 38
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein
transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8
PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A*
1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A*
2hei_A* 1z07_A*
Length = 170
Score = 67.5 bits (166), Expect = 4e-15
Identities = 25/76 (32%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT+ +SF WV L R++S +AL NK D+ ++R V + A
Sbjct: 82 AIVVYDITNEESFARAKNWVK--ELQRQASPNIVIALSGNKADLANKRAVDFQEAQSYAD 139
Query: 92 SLHLHSFAVSARTGDN 107
L SA+T N
Sbjct: 140 DNSLLFMETSAKTSMN 155
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics,
structural genomics consortium, SGC, signaling protein;
HET: GDP; 2.05A {Homo sapiens}
Length = 201
Score = 68.1 bits (167), Expect = 4e-15
Identities = 22/77 (28%), Positives = 35/77 (45%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I YDIT SF S+P W++ + + + + L+ NK D+ R V+L LA+
Sbjct: 105 AILAYDITKRSSFLSVPHWIE--DVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAE 162
Query: 92 SLHLHSFA-VSARTGDN 107
+ SA+ N
Sbjct: 163 HYDILCAIETSAKDSSN 179
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide,
transport protein; HET: GNH; 2.08A {Arabidopsis
thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Length = 181
Score = 67.6 bits (166), Expect = 4e-15
Identities = 24/76 (31%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I ++D+T+ SF WV L + + +AL NK D+ R VT E AQ
Sbjct: 88 AIIVFDVTNQASFERAKKWVQ--ELQAQGNPNMVMALAGNKSDLLDARKVTAEDAQTYAQ 145
Query: 92 SLHLHSFAVSARTGDN 107
L SA+T N
Sbjct: 146 ENGLFFMETSAKTATN 161
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon
cuniculi}
Length = 218
Score = 68.5 bits (168), Expect = 5e-15
Identities = 15/76 (19%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +D+TS + ++ WV + + ANK D+++++ ++ + ++ +
Sbjct: 88 AILFFDVTSRITCQNLARWVK--EFQAVVGNEAPIVVCANKIDIKNRQKISKKLVMEVLK 145
Query: 92 SLHLHSFAVSARTGDN 107
+ F +SA+T N
Sbjct: 146 GKNYEYFEISAKTAHN 161
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking,
protein transport; HET: GDP; 1.90A {Mus musculus} SCOP:
c.37.1.8 PDB: 1z22_A*
Length = 168
Score = 67.1 bits (165), Expect = 5e-15
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++ T +SF +I +W + ALV NK D+ + E LA+
Sbjct: 81 CVLVFSTTDRESFEAISSWREKV---VAEVGDIPTALVQNKIDLLDDSCIKNEEAEGLAK 137
Query: 92 SLHLHSFAVSARTGDN 107
L L + S + N
Sbjct: 138 RLKLRFYRTSVKEDLN 153
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular
transport, acetylation, golgi apparatus, lipoprotein,
membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Length = 223
Score = 67.8 bits (166), Expect = 9e-15
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDI+ S+ + W+ L + V L+ NK D+ H R V E AQ
Sbjct: 89 ALIVYDISKSSSYENCNHWLS--ELRENADDNVAVGLIGNKSDLAHLRAVPTEESKTFAQ 146
Query: 92 SLHLHSFAVSARTGDN 107
L SA +N
Sbjct: 147 ENQLLFTETSALNSEN 162
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium,
SGC, limited proteolysis, GTP-binding,
nucleotide-binding, signaling protein; HET: GDP; 1.85A
{Homo sapiens}
Length = 187
Score = 66.8 bits (164), Expect = 1e-14
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVTLERHAKLAQ 91
+ +Y + S QSF S ++++L L+ K + + L+ NK DM R VT LA
Sbjct: 96 LVVYSVDSRQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQYRQVTKAEGVALAG 155
Query: 92 SLHLHSFAVSART 104
F VSA
Sbjct: 156 RFGCLFFEVSACL 168
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine
exchange factor; 2.10A {Homo sapiens}
Length = 181
Score = 66.0 bits (162), Expect = 2e-14
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
VI +YD+TS +SF ++ W+ ++ LV NK D ++VV E K A
Sbjct: 85 VIVVYDVTSAESFVNVKRWLHEI---NQNCDDVCRILVGNKNDDPERKVVETEDAYKFAG 141
Query: 92 SLHLHSFAVSARTGDN 107
+ + F SA+ N
Sbjct: 142 QMGIQLFETSAKENVN 157
Score = 28.7 bits (65), Expect = 0.52
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 11 NDNYEIQLKVVLLGDPSCGK 30
+Y+ K++++GD GK
Sbjct: 3 ARDYDHLFKLLIIGDSGVGK 22
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE
delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} PDB:
1xtq_A* 1xtr_A* 1xts_A* 2l0x_A*
Length = 181
Score = 64.5 bits (158), Expect = 7e-14
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I +Y +TS +SF I L+ + LV NK D+ +RV++ E LA+S
Sbjct: 82 ILVYSVTSIKSFEVIKVIHGK-LLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAES 140
Query: 93 LHLHSFAVSARTGDN 107
+ SA+
Sbjct: 141 WNAAFLESSAKENQT 155
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular
trafficking, protein transport; HET: GNP; 1.81A {Mus
musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Length = 189
Score = 64.5 bits (158), Expect = 8e-14
Identities = 22/77 (28%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV-ALVANKGDMEHQRVVTLERHAKLA 90
V+F+YD+T+ SFHS+P W++ + LV NK D+ V + K A
Sbjct: 97 VVFVYDMTNMASFHSLPAWIE--ECKQHLLANDIPRILVGNKCDLRSAIQVPTDLAQKFA 154
Query: 91 QSLHLHSFAVSARTGDN 107
+ + F SA+ ++
Sbjct: 155 DTHSMPLFETSAKNPND 171
Score = 27.9 bits (63), Expect = 1.1
Identities = 5/20 (25%), Positives = 11/20 (55%)
Query: 11 NDNYEIQLKVVLLGDPSCGK 30
+ K++++GD + GK
Sbjct: 14 RGSRSRIFKIIVIGDSNVGK 33
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein,
endocytosis/exocytosis complex; HET: GDP; 1.80A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A*
2ocy_C 2eqb_A
Length = 170
Score = 64.1 bits (157), Expect = 9e-14
Identities = 27/76 (35%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YDIT ++F +I W +N ++ + LV NK DME RVVT ++ LA+
Sbjct: 79 IILVYDITDERTFTNIKQW--FKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAK 135
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+ DN
Sbjct: 136 ELGIPFIESSAKNDDN 151
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport;
HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB:
1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Length = 207
Score = 64.6 bits (158), Expect = 9e-14
Identities = 18/78 (23%), Positives = 37/78 (47%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV--ALVANKGDMEHQRVVTLERHAKL 89
+ ++D+T+ +F ++ +W D F + P ++ NK D+E+++V T A
Sbjct: 84 CVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRAQAWC 143
Query: 90 AQSLHLHSFAVSARTGDN 107
++ F SA+ N
Sbjct: 144 YSKNNIPYFETSAKEAIN 161
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular
transport, cytoplasm, cytoplasmic vesicle, exocytosis,
GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae}
SCOP: c.37.1.8
Length = 213
Score = 63.9 bits (156), Expect = 2e-13
Identities = 26/76 (34%), Positives = 41/76 (53%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+I +YD+T ++F +I W +N ++ + LV NK DME RVVT ++ LA+
Sbjct: 96 IILVYDVTDERTFTNIKQW--FKTVNEHANDEAQLLLVGNKSDME-TRVVTADQGEALAK 152
Query: 92 SLHLHSFAVSARTGDN 107
L + SA+ DN
Sbjct: 153 ELGIPFIESSAKNDDN 168
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural
genomics, SGC, structural genomics consortium, signaling
protein; HET: GDP; 2.15A {Homo sapiens}
Length = 199
Score = 63.1 bits (154), Expect = 3e-13
Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 8/82 (9%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH------QRVVTLER 85
V+ +YD+T +SF +I WVD + + + LV NK D+ Q+ V
Sbjct: 104 VLLLYDVTCEKSFLNIREWVD--MIEDAAHETVPIMLVGNKADIRDTAATEGQKCVPGHF 161
Query: 86 HAKLAQSLHLHSFAVSARTGDN 107
KLA + SA+ G N
Sbjct: 162 GEKLAMTYGALFCETSAKDGSN 183
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL,
RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2a78_A*
Length = 187
Score = 63.0 bits (154), Expect = 4e-13
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++ IT +SF + + + L K LV NK D+E +R V++E A+
Sbjct: 94 LCVFSITEMESFAATADFREQ-ILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 152
Query: 93 LHLHSFAVSARTGDN 107
+++ SA+T N
Sbjct: 153 WNVNYVETSAKTRAN 167
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP
binding, GTP hydrolysis, structural genomics, structural
genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 196
Score = 62.6 bits (153), Expect = 5e-13
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT SF + + L+ K + LV NK D++H R V+ E KLA
Sbjct: 103 VLVYDITDRGSFEEVLPLKN--ILDEIKKPKNVTLILVGNKADLDHSRQVSTEEGEKLAT 160
Query: 92 SLHLHSFAVSARTG 105
L + SA TG
Sbjct: 161 ELACAFYECSACTG 174
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase,
signaling protein; HET: GDP; 1.50A {Saguinus oedipus}
SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A*
1zc4_A* 2kwi_A* 2ke5_A*
Length = 168
Score = 61.3 bits (150), Expect = 8e-13
Identities = 20/75 (26%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++ IT +SF + + + L K LV NK D+E +R V++E A
Sbjct: 80 LCVFSITEMESFAATADFREQ-ILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRADQ 138
Query: 93 LHLHSFAVSARTGDN 107
+++ SA+T N
Sbjct: 139 WNVNYVETSAKTRAN 153
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GNP; 1.32A {Homo sapiens}
SCOP: c.37.1.8
Length = 195
Score = 61.9 bits (151), Expect = 1e-12
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV-ALVANKGDMEHQRVVTLERHAKLA 90
VI +YD+T +F + W L L + V LV NK D E R V K A
Sbjct: 91 VILVYDVTRRDTFVKLDNW--LNELETYCTRNDIVNMLVGNKIDKE-NREVDRNEGLKFA 147
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T D
Sbjct: 148 RKHSMLFIEASAKTCDG 164
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural
genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo
sapiens}
Length = 201
Score = 61.8 bits (151), Expect = 1e-12
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +Y +TS SF I + T V LV NK D+ +R V KLA+S
Sbjct: 100 VLVYSVTSLHSFQVIESLYQKL-HEGHGKTRVPVVLVGNKADLSPEREVQAVEGKKLAES 158
Query: 93 LHLHSFAVSARTGDN 107
SAR
Sbjct: 159 WGATFMESSARENQL 173
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase,
ribosylating toxin, GTP-binding, lipoprotein,
prenylation; HET: GDP; 2.66A {Homo sapiens}
Length = 206
Score = 61.9 bits (151), Expect = 1e-12
Identities = 20/75 (26%), Positives = 36/75 (48%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++ IT +SF + + + L K LV NK D+E +R V++E A+
Sbjct: 90 LCVFSITEMESFAATADFREQ-ILRVKEDENVPFLLVGNKSDLEDKRQVSVEEAKNRAEQ 148
Query: 93 LHLHSFAVSARTGDN 107
+++ SA+T N
Sbjct: 149 WNVNYVETSAKTRAN 163
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP;
1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Length = 167
Score = 61.0 bits (149), Expect = 1e-12
Identities = 21/75 (28%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I +Y + + QSF I D + K V LV NK D+E +R V+ LA+
Sbjct: 79 ILVYSLVNQQSFQDIKPMRDQ-IIRVKRYEKVPVILVGNKVDLESEREVSSSEGRALAEE 137
Query: 93 LHLHSFAVSARTGDN 107
SA++
Sbjct: 138 WGCPFMETSAKSKTM 152
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT
complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Length = 208
Score = 61.5 bits (150), Expect = 1e-12
Identities = 26/79 (32%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV-ALVANKGDMEHQR-VVTLERHAKL 89
I ++D++S +SF S W +L R LVANK D+ QR V L+
Sbjct: 100 AILVFDVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPPQRHQVRLDMAQDW 159
Query: 90 AQSLHLHSFAVSAR-TGDN 107
A + L F VSA G +
Sbjct: 160 ATTNTLDFFDVSANPPGKD 178
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens}
SCOP: c.37.1.8 PDB: 2ery_A*
Length = 181
Score = 61.0 bits (149), Expect = 2e-12
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ ++ I QSF+ + L K V LV NK D+E QR V + S
Sbjct: 85 LLVFAINDRQSFNEVGKLFTQ-ILRVKDRDDFPVVLVGNKADLESQRQVPRSEASAFGAS 143
Query: 93 LHLHSFAVSARTGDN 107
H+ F SA+ N
Sbjct: 144 HHVAYFEASAKLRLN 158
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.76A {Mus musculus}
Length = 169
Score = 60.6 bits (148), Expect = 2e-12
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++ +T +SF +P + L V LV NK D+ R V+LE LA
Sbjct: 80 LIVFSVTDRRSFSKVPETLL--RLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG 137
Query: 92 SLHLHSFAVSARTGDN 107
+L SA N
Sbjct: 138 TLSCKHIETSAALHHN 153
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis,
YPT/RAB protein, endocytosis, hydrolase,
endocytosis/exocytosis complex; HET: GDP; 1.35A
{Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Length = 182
Score = 60.7 bits (148), Expect = 2e-12
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 4/80 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV--ALVANKGDMEH-QRVVTLERHAK 88
+ +YD+T+ SF +I +W D F ++ ++P ++ NK D E +++V+ + +
Sbjct: 85 CVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEKSAQE 144
Query: 89 LAQSLHLHSFA-VSARTGDN 107
LA+SL SA+ N
Sbjct: 145 LAKSLGDIPLFLTSAKNAIN 164
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein;
HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Length = 172
Score = 60.2 bits (147), Expect = 3e-12
Identities = 21/77 (27%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 33 IFMYDITSGQSFHSIPTWVD--LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I +Y ITS QS + + S P + LV NK D R V LA
Sbjct: 79 ILVYSITSRQSLEELKPIYEQICEIKGDVESIP--IMLVGNKCDESPSREVQSSEAEALA 136
Query: 91 QSLHLHSFAVSARTGDN 107
++ SA+ N
Sbjct: 137 RTWKCAFMETSAKLNHN 153
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein;
HET: GDP; 1.20A {Mus musculus} PDB: 3kkp_A* 3kko_A*
3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Length = 183
Score = 59.9 bits (146), Expect = 4e-12
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+ +Y +T SF + + L + + + LVANK D+ H R VT ++ ++A
Sbjct: 94 LIVYSVTDKASFEHVDRFHQLILRVKDRESFPMI-LVANKVDLMHLRKVTRDQGKEMATK 152
Query: 93 LHLHSFAVSARTG 105
++ SA+
Sbjct: 153 YNIPYIETSAKDP 165
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics
consortium, SGC, GDP, membrane, nucleotide-binding,
nucleotide binding protein; HET: GDP; 1.82A {Homo
sapiens}
Length = 195
Score = 59.9 bits (146), Expect = 5e-12
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY-VALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++ +T +SF +P + L V LV NK D+ R V+LE LA
Sbjct: 101 LIVFSVTDRRSFSKVPETLL--RLRAGRPHHDLPVILVGNKSDLARSREVSLEEGRHLAG 158
Query: 92 SLHLHSFAVSARTGDN 107
+L SA N
Sbjct: 159 TLSCKHIETSAALHHN 174
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics,
GTP-binding, nucleotide-binding, signaling protein; HET:
GDP; 1.89A {Plasmodium falciparum}
Length = 208
Score = 59.5 bits (144), Expect = 9e-12
Identities = 24/76 (31%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I ++DI++ + TWV+ K S+ + LVANK D V + K AQ
Sbjct: 120 AIVVFDISNSNTLDRAKTWVN----QLKISSNYIIILVANKIDKNK-FQVDILEVQKYAQ 174
Query: 92 SLHLHSFAVSARTGDN 107
+L SA+TG N
Sbjct: 175 DNNLLFIQTSAKTGTN 190
Score = 31.7 bits (72), Expect = 0.060
Identities = 10/38 (26%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 13 NYEIQLKVVLLGDPSCGK---IVIFMYDITSGQSFHSI 47
+ K VLLG+ S GK ++ D + +I
Sbjct: 3 EKKSSYKTVLLGESSVGKSSIVLRLTKDTFHENTNTTI 40
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport;
HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB:
1s8f_A* 1yzl_A* 2ocb_A*
Length = 177
Score = 58.3 bits (142), Expect = 1e-11
Identities = 14/79 (17%), Positives = 31/79 (39%), Gaps = 4/79 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVD--LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ + + QSF ++ W +++ + K ++ NK D+ R V+ E
Sbjct: 83 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISE-RQVSTEEAQAW 141
Query: 90 AQSLHLHSFA-VSARTGDN 107
+ + + SA+ N
Sbjct: 142 CRDNGDYPYFETSAKDATN 160
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and
GEM like GTP protein 1, structural genomics; HET: GDP;
2.50A {Homo sapiens}
Length = 175
Score = 58.3 bits (142), Expect = 1e-11
Identities = 19/73 (26%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 36 YDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH 94
Y I SF S L R + + LV NK D+ R V++E A
Sbjct: 85 YSIADRGSFESASELRI--QLRRTHQADHVPIILVGNKADLARCREVSVEEGRACAVVFD 142
Query: 95 LHSFAVSARTGDN 107
SA N
Sbjct: 143 CKFIETSATLQHN 155
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding,
nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum
tepidum}
Length = 535
Score = 60.4 bits (146), Expect = 1e-11
Identities = 11/77 (14%), Positives = 26/77 (33%), Gaps = 6/77 (7%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ + + D + + W+ S V +V NK D + ++ +
Sbjct: 124 VYMLLLDSRT---DSNKHYWLRHIEKYGGKSP---VIVVMNKIDENPSYNIEQKKINERF 177
Query: 91 QSLHLHSFAVSARTGDN 107
++ +S + GD
Sbjct: 178 PAIENRFHRISCKNGDG 194
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation,
cytoplasm, HOST- virus interaction, nucleotide-binding,
nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens}
PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A*
1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C*
3ch5_A* 1qg4_A* 3ea5_A* 1qg2_A* 1byu_A* 3ran_A* 3gjx_C*
...
Length = 221
Score = 58.9 bits (143), Expect = 2e-11
Identities = 16/76 (21%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I M+D+TS ++ ++P W + + L NK D++ ++V + +
Sbjct: 91 AIIMFDVTSRVTYKNVPNWHRDL---VRVCENIPIVLCGNKVDIKDRKVK--AKSIVFHR 145
Query: 92 SLHLHSFAVSARTGDN 107
+L + +SA++ N
Sbjct: 146 KKNLQYYDISAKSNYN 161
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein;
HET: GNP; 1.66A {Homo sapiens} PDB: 3q7p_A* 3q7q_A*
2gjs_A* 2dpx_A*
Length = 166
Score = 57.1 bits (139), Expect = 3e-11
Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 3/73 (4%)
Query: 36 YDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH 94
Y +T SF L R + + + LV NK D+ R V+++ A
Sbjct: 80 YSVTDKGSFEKASELRV--QLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFD 137
Query: 95 LHSFAVSARTGDN 107
SA N
Sbjct: 138 CKFIETSAALHHN 150
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase;
HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A*
4dso_A*
Length = 189
Score = 57.2 bits (139), Expect = 5e-11
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++ I + +SF I + + K S + LV NK D+ R V ++ LA+
Sbjct: 79 FLCVFAINNTKSFEDIHHYREQI-KRVKDSEDVPMVLVGNKCDLP-SRTVDTKQAQDLAR 136
Query: 92 SLHLHSFAVSARTGDN 107
S + SA+T
Sbjct: 137 SYGIPFIETSAKTRQG 152
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK
family, structur genomics, structural genomics
consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo
sapiens} SCOP: c.37.1.8
Length = 211
Score = 57.3 bits (139), Expect = 5e-11
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 36 YDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH 94
Y IT SF L R + + + LV NK D+ R V++ A
Sbjct: 119 YSITDRASFEKASELRI--QLRRARQTEDIPIILVGNKSDLVRCREVSVSEGRACAVVFD 176
Query: 95 LHSFAVSARTGDN 107
SA N
Sbjct: 177 CKFIETSAAVQHN 189
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein
complex, effectors, signaling protein; HET: GTP; 1.90A
{Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A*
3cf6_R* 3brw_D*
Length = 167
Score = 56.3 bits (137), Expect = 7e-11
Identities = 21/76 (27%), Positives = 36/76 (47%), Gaps = 2/76 (2%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
+Y IT+ +F+ + + L K + + LV NK D+E +RVV E+ LA+
Sbjct: 79 ALVYSITAQSTFNDLQDLREQ-ILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQ 137
Query: 93 -LHLHSFAVSARTGDN 107
+ SA++ N
Sbjct: 138 WCNCAFLESSAKSKIN 153
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural
genomics consortium, SGC, alternative splicing, ANK
repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens}
Length = 184
Score = 56.4 bits (137), Expect = 8e-11
Identities = 15/79 (18%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM--EHQRVVTLERHAKL 89
V+F++ + SF ++ + + ++++ + LV + + + RV+ R KL
Sbjct: 89 VVFVFSLEDEISFQTVYNYFLRL-CSFRNASEVPMVLVGTQDAISAANPRVIDDSRARKL 147
Query: 90 AQSLHLHSFA-VSARTGDN 107
+ L ++ A G N
Sbjct: 148 STDLKRCTYYETCATYGLN 166
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein,
fluor membrane, lipoprotein, palmitate, prenylation;
HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X*
2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A*
6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A*
1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Length = 166
Score = 55.6 bits (135), Expect = 1e-10
Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++ I + +SF I + + K S + LV NK D+ R V + LA+
Sbjct: 78 FLCVFAINNTKSFEDIHQYREQI-KRVKDSDDVPMVLVGNKSDLA-ARTVESRQAQDLAR 135
Query: 92 SLHLHSFAVSARTGDN 107
S + SA+T
Sbjct: 136 SYGIPYIETSAKTRQG 151
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene,
disease mutation, golgi apparatus, GTP-binding,
lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo
sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Length = 190
Score = 55.7 bits (135), Expect = 1e-10
Identities = 19/76 (25%), Positives = 34/76 (44%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++ I + +SF I + + K S + LV NK D+ R V ++ +LA+
Sbjct: 96 FLCVFAINNSKSFADINLYREQ-IKRVKDSDDVPMVLVGNKCDLP-TRTVDTKQAHELAK 153
Query: 92 SLHLHSFAVSARTGDN 107
S + SA+T
Sbjct: 154 SYGIPFIETSAKTRQG 169
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis,
structural genomics, structural genomics consortium,
SGC, transport protein; HET: GDP; 1.90A {Homo sapiens}
SCOP: c.37.1.8
Length = 199
Score = 53.8 bits (130), Expect = 1e-09
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 1/75 (1%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQS 92
I ++ +TS QS + L + S V LV NK D E QR V +AQ
Sbjct: 84 ILVFSVTSKQSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCD-ETQREVDTREAQAVAQE 142
Query: 93 LHLHSFAVSARTGDN 107
SA+ N
Sbjct: 143 WKCAFMETSAKMNYN 157
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding,
polymorphism, nucleotide-binding, alternative splicing,
protein transport; HET: CAF; 1.5A {Homo sapiens} PDB:
2bmj_A
Length = 178
Score = 52.6 bits (127), Expect = 2e-09
Identities = 15/83 (18%), Positives = 24/83 (28%), Gaps = 4/83 (4%)
Query: 29 GKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY---VALVANKGDMEHQRVVTLER 85
VIF++ + SF ++ R + ++ RVV R
Sbjct: 73 ADAVIFVFSLEDENSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRISASSPRVVGDAR 132
Query: 86 HAKL-AQSLHLHSFAVSARTGDN 107
L A + A G N
Sbjct: 133 ARALXADMKRCSYYETXATYGLN 155
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP
hydrolysis, YPT/RAB protein, endocytosis, hydrolase;
HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP:
c.37.1.8
Length = 170
Score = 49.4 bits (118), Expect = 3e-08
Identities = 29/79 (36%), Positives = 40/79 (50%), Gaps = 5/79 (6%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEH---QRVVTLERHAK 88
+ +YD+T QSF WV L+ ++S +ALV NK D +R V E K
Sbjct: 79 ALVVYDVTKPQSFIKARHWVK--ELHEQASKDIIIALVGNKIDXLQEGGERKVAREEGEK 136
Query: 89 LAQSLHLHSFAVSARTGDN 107
LA+ L F SA+TG+N
Sbjct: 137 LAEEKGLLFFETSAKTGEN 155
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase,
conformational change, cysteine-modified, G-protein
hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B*
2ht6_A*
Length = 192
Score = 48.4 bits (116), Expect = 7e-08
Identities = 18/73 (24%), Positives = 24/73 (32%), Gaps = 3/73 (4%)
Query: 36 YDITSGQSFHSIPTWVDLFHLNR-KSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLH 94
Y IT SF L R + + + LV NK D+ R V++ A
Sbjct: 88 YSITDRASFEKASELRI--QLRRARQTEDIPIILVGNKSDLVRXREVSVSEGRAXAVVFD 145
Query: 95 LHSFAVSARTGDN 107
SA N
Sbjct: 146 XKFIETSAAVQHN 158
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2,
ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding,
GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB:
3d6t_B*
Length = 184
Score = 47.0 bits (112), Expect = 2e-07
Identities = 14/85 (16%), Positives = 29/85 (34%), Gaps = 12/85 (14%)
Query: 32 VIFMYDITSGQS-FHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR---VVTLERHA 87
+ +YD++ GQ+ ++ W+ SS V LV D+ ++ +
Sbjct: 83 YLAVYDLSKGQAEVDAMKPWLFNIKARASSSP---VILVGTHLDVSDEKQRKACMSKITK 139
Query: 88 KLAQSLHL-----HSFAVSARTGDN 107
+L + F + D
Sbjct: 140 ELLNKRGFPAIRDYHFVNATEESDA 164
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase,
glucorticoid receptor, structural genomics consortium,
SGC, alternative splicing; HET: GNP; 1.80A {Homo
sapiens}
Length = 255
Score = 46.1 bits (109), Expect = 7e-07
Identities = 16/78 (20%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Query: 32 VIFMYDITSG--QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ D++ G ++F +V N+ + T + +V K D +R + L
Sbjct: 166 FLLGIDVSRGMNRNFDDQLKFVSNL-YNQLAKTKKPIVVVLTKCDEGVERYIRDAHTFAL 224
Query: 90 AQSLHLHSFAVSARTGDN 107
++ +L SAR+ N
Sbjct: 225 SKK-NLQVVETSARSNVN 241
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding,
GTP-binding, signaling Pro lipoprotein, prenylation;
HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B*
Length = 194
Score = 37.7 bits (88), Expect = 6e-04
Identities = 17/82 (20%), Positives = 30/82 (36%), Gaps = 9/82 (10%)
Query: 31 IVIFMYDITSGQSFHSIPT-WVD-LFHLNRKSSTPTYVALVANKGDM--EHQRVVTLERH 86
+V+ + + + SF +I T W + H LV K D+ + VT +
Sbjct: 97 VVLLCFAVNNRTSFDNISTKWEPEIKHYIDT--AK--TVLVGLKVDLRKDGSDDVTKQEG 152
Query: 87 AKLAQSLHLHSFA-VSARTGDN 107
L Q L ++ S+
Sbjct: 153 DDLCQKLGCVAYIEASSVAKIG 174
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 33.7 bits (76), Expect = 0.024
Identities = 22/171 (12%), Positives = 51/171 (29%), Gaps = 44/171 (25%)
Query: 5 KMLNLHNDNYEIQ--LKVVLLGDPSCGK-----IVIFMYDITSGQSFHSIPTWVDLFHLN 57
L L E++ V++ G GK V Y + F W++L + N
Sbjct: 136 PYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF--WLNLKNCN 193
Query: 58 RKSS------------TPTYVALVANKGDMEH------QRVVTLERHAKLAQSL------ 93
+ P + + + +++ + L + L
Sbjct: 194 SPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNV 253
Query: 94 ----HLHSFAVSARTGDNCWVNTRTPEINPLKYLQSNNEYNFLSMVGFEAG 140
++F +S + + TR ++ +L + + +S+
Sbjct: 254 QNAKAWNAFNLSCKI----LLTTRFKQV--TDFLSAATTTH-ISLDHHSMT 297
Score = 27.1 bits (59), Expect = 3.3
Identities = 21/102 (20%), Positives = 33/102 (32%), Gaps = 13/102 (12%)
Query: 25 DPSCGKIVIFMYDITSGQSF-----HSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR 79
+ SC KI++ T + + T + L H + + +L+ D Q
Sbjct: 263 NLSC-KILL----TTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQ- 316
Query: 80 VVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLK 121
L R L A S R G W N + + L
Sbjct: 317 --DLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLT 356
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial
GTPase, bacterial POL motility, POLE localisation,
alpha/beta protein; HET: GDP; 1.90A {Thermus
thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Length = 198
Score = 32.0 bits (73), Expect = 0.045
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 4/79 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFH-LNRKSSTPTYVALV--ANKGDMEHQRVVTLERHAK 88
++F+ D + + + ++ L T V +V NK D+ V A
Sbjct: 101 IVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDALPVE-MVRAV 159
Query: 89 LAQSLHLHSFAVSARTGDN 107
+ A G
Sbjct: 160 VDPEGKFPVLEAVATEGKG 178
Score = 27.0 bits (60), Expect = 2.3
Identities = 9/25 (36%), Positives = 12/25 (48%)
Query: 6 MLNLHNDNYEIQLKVVLLGDPSCGK 30
M ++ N EI K+V G GK
Sbjct: 3 MSTINFANREINFKIVYYGPGLSGK 27
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm,
lipoprotein, membrane, methylation, nucleotide-binding,
prenylation, ----; HET: GDP; 1.53A {Arabidopsis
thaliana} PDB: 2nty_C* 2wbl_C
Length = 182
Score = 31.6 bits (72), Expect = 0.056
Identities = 15/90 (16%), Positives = 36/90 (40%), Gaps = 17/90 (18%)
Query: 31 IVIFMYDITSGQSFHSIPT-WV-DLFHLNRKSSTPTYVALVANKGDMEH----------Q 78
+ I + + S S+ ++ W+ +L H P + LV K D+
Sbjct: 82 VFILAFSLISKASYENVSKKWIPELKHYAPG--VP--IVLVGTKLDLRDDKQFFIDHPGA 137
Query: 79 RVVTLERHAKLAQSLHLHSFA-VSARTGDN 107
+T + +L + + ++ S+++ +N
Sbjct: 138 VPITTVQGEELKKLIGAPAYIECSSKSQEN 167
Score = 25.8 bits (57), Expect = 6.2
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 18 LKVVLLGDPSCGK 30
+K V +GD + GK
Sbjct: 9 IKCVTVGDGAVGK 21
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 30.9 bits (71), Expect = 0.13
Identities = 15/82 (18%), Positives = 29/82 (35%), Gaps = 11/82 (13%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+++FM D T + + + + + + P V +V NK D L ++
Sbjct: 95 VILFMIDAT--EGWRPRDEEI-YQNFIKPLNKP--VIVVINKIDKIGPAKNVLPLIDEIH 149
Query: 91 QSLHLHSFA----VSARTGDNC 108
+ +SA G N
Sbjct: 150 KK--HPELTEIVPISALKGANL 169
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling
protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8
PDB: 2v55_B*
Length = 184
Score = 30.1 bits (68), Expect = 0.21
Identities = 7/16 (43%), Positives = 12/16 (75%)
Query: 15 EIQLKVVLLGDPSCGK 30
++ K+V++GD CGK
Sbjct: 5 NVKCKIVVVGDSQCGK 20
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 29.8 bits (68), Expect = 0.25
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 12/57 (21%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLF---HLNRKSSTPTYVALVANKGDMEHQRVVTLE 84
+V+F D + T D +L R+ P V LVA K D +
Sbjct: 82 VVLFAVDGRAE------LTQADYEVAEYL-RRKGKP--VILVATKVDDPKHELYLGP 129
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase,
signal transduction; HET: GTP; 2.1A {Mus musculus}
SCOP: c.37.1.8
Length = 205
Score = 29.7 bits (67), Expect = 0.28
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 11 NDNYEIQLKVVLLGDPSCGK 30
+ N ++ K+V++GD CGK
Sbjct: 22 DPNQNVKCKIVVVGDSQCGK 41
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 29.8 bits (68), Expect = 0.39
Identities = 18/81 (22%), Positives = 27/81 (33%), Gaps = 18/81 (22%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLF---HLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
++IFM + G T D L ++ P V L NK D R + +
Sbjct: 85 VIIFMVNGREG------VTAADEEVAKIL-YRTKKP--VVLAVNKLDNTEMRANIYDFY- 134
Query: 88 KLAQSLHL-HSFAVSARTGDN 107
SL + +S G
Sbjct: 135 ----SLGFGEPYPISGTHGLG 151
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin,
small GTPase, structural genomic consortium, SGC; HET:
GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Length = 214
Score = 29.1 bits (65), Expect = 0.52
Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 19/92 (20%)
Query: 31 IVIFMYDITSGQSFHSIPT-WVD-LFHLNRKSSTPTYVALVANKGDM------------E 76
V+ +DI+ ++ S W + T V L+ K D+ +
Sbjct: 101 AVLLCFDISRPETVDSALKKWRTEILDYCPS--TR--VLLIGCKTDLRTDLSTLMELSHQ 156
Query: 77 HQRVVTLERHAKLAQSLHLHSFA-VSARTGDN 107
Q ++ E+ +A+ L + SA T +
Sbjct: 157 KQAPISYEQGCAIAKQLGAEIYLEGSAFTSEK 188
Score = 28.3 bits (63), Expect = 0.92
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 15 EIQLKVVLLGDPSCGK 30
+ K+VL+GD CGK
Sbjct: 25 VARCKLVLVGDVQCGK 40
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta,
hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP:
c.37.1.8
Length = 194
Score = 28.6 bits (64), Expect = 0.60
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 15 EIQLKVVLLGDPSCGK 30
+ LK V++GD + GK
Sbjct: 16 ALMLKCVVVGDGAVGK 31
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super
family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8
PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D*
2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A*
3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C
...
Length = 186
Score = 28.2 bits (63), Expect = 0.85
Identities = 6/16 (37%), Positives = 10/16 (62%)
Query: 15 EIQLKVVLLGDPSCGK 30
+K V++GD + GK
Sbjct: 3 PQAIKCVVVGDGAVGK 18
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling
protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens}
PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B
1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A*
1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B*
...
Length = 201
Score = 28.2 bits (63), Expect = 0.88
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 15 EIQLKVVLLGDPSCGK 30
I+ K+V++GD +CGK
Sbjct: 23 AIRKKLVIVGDGACGK 38
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 27.6 bits (60), Expect = 1.2
Identities = 9/32 (28%), Positives = 13/32 (40%), Gaps = 10/32 (31%)
Query: 76 EHQRVVTLERHAKL-----AQSLHLHSFAVSA 102
E Q + L+ KL A +L A+ A
Sbjct: 18 EKQALKKLQASLKLYADDSAPAL-----AIKA 44
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP
hydrolysis, structural genomics, structural genomics
consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP:
c.37.1.8
Length = 207
Score = 27.8 bits (62), Expect = 1.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Query: 15 EIQLKVVLLGDPSCGK 30
I+ K+V++GD +CGK
Sbjct: 23 MIRKKLVVVGDGACGK 38
>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans;
methyltransferase, isomerization, protein repair,
S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila
melanogaster} SCOP: c.66.1.7
Length = 227
Score = 27.2 bits (61), Expect = 1.9
Identities = 7/24 (29%), Positives = 12/24 (50%)
Query: 68 LVANKGDMEHQRVVTLERHAKLAQ 91
+ KG R+V +E A+L +
Sbjct: 105 YIKAKGVDADTRIVGIEHQAELVR 128
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics,
structural genomics consortium,; HET: GDP; 1.73A {Homo
sapiens}
Length = 201
Score = 27.0 bits (60), Expect = 2.3
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 17 QLKVVLLGDPSCGK 30
+K VL+GD + GK
Sbjct: 20 GVKCVLVGDGAVGK 33
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane,
prenylation, hydrolase, nucleotide-binding,
methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A
{Homo sapiens}
Length = 214
Score = 27.0 bits (60), Expect = 2.4
Identities = 10/26 (38%), Positives = 12/26 (46%)
Query: 5 KMLNLHNDNYEIQLKVVLLGDPSCGK 30
M +KVVL+GD CGK
Sbjct: 22 SMAGEEAPPGVRSVKVVLVGDGGCGK 47
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR,
protein transport; HET: GNP; 2.77A {Saccharomyces
cerevisiae}
Length = 307
Score = 26.9 bits (59), Expect = 3.2
Identities = 10/65 (15%), Positives = 27/65 (41%), Gaps = 3/65 (4%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM---EHQRVVTLERHAK 88
+I ++D+ S + I + RK S + ++ +K D+ + + +
Sbjct: 84 LIHVFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQLDKREELFQIMMKN 143
Query: 89 LAQSL 93
L+++
Sbjct: 144 LSETS 148
>1x3l_A Hypothetical protein PH0495; structural genomics, riken structural
genomics/proteomics in RSGI, NPPSFA; 2.10A {Pyrococcus
horikoshii}
Length = 440
Score = 26.8 bits (58), Expect = 3.3
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 10/38 (26%)
Query: 117 INPLKYLQSNNEYNFLSMVGFEAGTFYMAVKRLTTGPT 154
I+ K L+ +N Y L VG L TGPT
Sbjct: 394 IDVEKVLKEHNSYEALKKVG----------GLLFTGPT 421
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein,
ROP9, atrac7, membrane, palmitate, RHO GTPase; HET:
GDP; 1.78A {Arabidopsis thaliana}
Length = 212
Score = 26.5 bits (59), Expect = 3.5
Identities = 6/13 (46%), Positives = 9/13 (69%)
Query: 18 LKVVLLGDPSCGK 30
+K V +GD + GK
Sbjct: 10 IKCVTVGDGAVGK 22
>3fb2_A Spectrin alpha chain, brain spectrin; non-erythroid alpha chain
alpha-II spectrin, fordrin alpha chain, sptan1,
SPTA2_human, NESG, HR5563A; 2.30A {Homo sapiens}
Length = 218
Score = 26.0 bits (57), Expect = 4.7
Identities = 5/20 (25%), Positives = 5/20 (25%)
Query: 84 ERHAKLAQSLHLHSFAVSAR 103
H S L F R
Sbjct: 4 HHHHHSHDSHDLQRFLSDFR 23
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold,
GTPase, GTP binding, protein binding, signali protein;
HET: GNP; 2.30A {Homo sapiens}
Length = 204
Score = 25.9 bits (57), Expect = 5.6
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 18 LKVVLLGDPSCGK 30
+K V++GD + GK
Sbjct: 31 IKCVVVGDGAVGK 43
>2b8n_A Glycerate kinase, putative; TM1585, glycerate kinase (EC 2.7.1.31),
structural genomics, center for structural genomics,
JCSG; 2.53A {Thermotoga maritima} SCOP: c.118.1.1
Length = 429
Score = 26.0 bits (56), Expect = 6.6
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 117 INPLKYLQSNNEYNFLSMVGFEAGTFYMAVKRLTTGPT 154
+P +YL++N+ YN L G L TGPT
Sbjct: 389 EDPYQYLKNNDSYNALKKSG----------ALLITGPT 416
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane
G-proteins, cell membrane, ION transport,
transmembrane; HET: GDP; 2.20A {Methanocaldococcus
jannaschii}
Length = 188
Score = 25.2 bits (56), Expect = 8.7
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 17 QLKVVLLGDPSCGKIVIF 34
++ L+G+P+ GK IF
Sbjct: 7 SYEIALIGNPNVGKSTIF 24
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0769 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,335,251
Number of extensions: 123327
Number of successful extensions: 483
Number of sequences better than 10.0: 1
Number of HSP's gapped: 403
Number of HSP's successfully gapped: 167
Length of query: 158
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 72
Effective length of database: 4,300,587
Effective search space: 309642264
Effective search space used: 309642264
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)