RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2600
(158 letters)
>d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId:
9606]}
Length = 170
Score = 42.2 bits (98), Expect = 5e-06
Identities = 25/78 (32%), Positives = 40/78 (51%), Gaps = 2/78 (2%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
++ +YD+T+ SF +I W+ ++ + + L+ NK D H+RVV E KL
Sbjct: 81 HALLLLYDVTNKASFDNIQAWL--TEIHEYAQHDVALMLLGNKVDSAHERVVKREDGEKL 138
Query: 90 AQSLHLHSFAVSARTGDN 107
A+ L SA+TG N
Sbjct: 139 AKEYGLPFMETSAKTGLN 156
>d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId:
9606]}
Length = 166
Score = 41.4 bits (96), Expect = 7e-06
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ +YDIT +++ + +W L ++ T + L+ NK D+E QR VT E + A
Sbjct: 79 GALMVYDITRRSTYNHLSSW--LTDARNLTNPNTVIILIGNKADLEAQRDVTYEEAKQFA 136
Query: 91 QSLHLHSFAVSARTGDN 107
+ L SA+TG+N
Sbjct: 137 EENGLLFLEASAKTGEN 153
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 41.3 bits (96), Expect = 1e-05
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
++ +YDIT+ +SF +I W + ++ +S ++ NK D+ +R V+ ER KLA
Sbjct: 81 GIMLVYDITNEKSFDNIRNW--IRNIEEHASADVEKMILGNKCDVNDKRQVSKERGEKLA 138
Query: 91 QSLHLHSFAVSARTGDN 107
+ SA+ N
Sbjct: 139 LDYGIKFMETSAKANIN 155
Score = 30.9 bits (69), Expect = 0.036
Identities = 11/50 (22%), Positives = 17/50 (34%), Gaps = 10/50 (20%)
Query: 13 NYEIQLKVVLLGDPSCGK----------IVIFMYDITSGQSFHSIPTWVD 52
Y+ K++L+GD GK + T G F +D
Sbjct: 2 TYDYLFKLLLIGDSGVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD 51
>d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId:
9606]}
Length = 164
Score = 40.7 bits (94), Expect = 1e-05
Identities = 22/76 (28%), Positives = 39/76 (51%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT+ SF W+D + + + + LV NK D+ +R V++E + A+
Sbjct: 76 AVVVYDITNVNSFQQTTKWID--DVRTERGSDVIIMLVGNKTDLADKRQVSIEEGERKAK 133
Query: 92 SLHLHSFAVSARTGDN 107
L++ SA+ G N
Sbjct: 134 ELNVMFIETSAKAGYN 149
Score = 28.4 bits (62), Expect = 0.26
Identities = 14/50 (28%), Positives = 19/50 (38%), Gaps = 3/50 (6%)
Query: 19 KVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY 65
K+V LG+ S GK I FMYD +I + + T
Sbjct: 2 KLVFLGEQSVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLEDRTIRL 51
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 40.6 bits (94), Expect = 2e-05
Identities = 17/77 (22%), Positives = 27/77 (35%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
VI +YD+T +F L L + V ++ + R V K A
Sbjct: 82 GVILVYDVTRRDTFV--KLDNWLNELETYCTRNDIVNMLVGNKIDKENREVDRNEGLKFA 139
Query: 91 QSLHLHSFAVSARTGDN 107
+ + SA+T D
Sbjct: 140 RKHSMLFIEASAKTCDG 156
>d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId:
9606]}
Length = 167
Score = 39.5 bits (91), Expect = 4e-05
Identities = 20/76 (26%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT SF + W + L + + +V NK D+E +R V+++ A+
Sbjct: 79 AILVYDITDEDSFQKVKNW--VKELRKMLGNEICLCIVGNKIDLEKERHVSIQEAESYAE 136
Query: 92 SLHLHSFAVSARTGDN 107
S+ + SA+
Sbjct: 137 SVGAKHYHTSAKQNKG 152
Score = 26.1 bits (56), Expect = 1.5
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 17 QLKVVLLGDPSCGK 30
KVVLLG+ GK
Sbjct: 3 SFKVVLLGEGCVGK 16
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 39.5 bits (91), Expect = 5e-05
Identities = 18/80 (22%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
+ +YDI ++ ++ W+ + S+ + LV NK D+ H R V +
Sbjct: 76 GAVGALLVYDIAKHLTYENVERWLKELRDHADSNIV--IMLVGNKSDLRHLRAVPTDEAR 133
Query: 88 KLAQSLHLHSFAVSARTGDN 107
A+ +L SA N
Sbjct: 134 AFAEKNNLSFIETSALDSTN 153
Score = 31.4 bits (70), Expect = 0.026
Identities = 12/47 (25%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 14 YEIQLKVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFHLN 57
Y+ KVVL+GD GK + F + + +S +I +
Sbjct: 1 YDYLFKVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQ 47
>d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 37.7 bits (86), Expect = 2e-04
Identities = 20/80 (25%), Positives = 28/80 (35%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G I +Y ITS QS + + + + LV NK D R V
Sbjct: 73 KGHAFILVYSITSRQSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPSREVQSSEAE 132
Query: 88 KLAQSLHLHSFAVSARTGDN 107
LA++ SA+ N
Sbjct: 133 ALARTWKCAFMETSAKLNHN 152
Score = 26.9 bits (58), Expect = 0.83
Identities = 5/40 (12%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 19 KVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFH 55
+V + G GK ++ F+ ++
Sbjct: 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVEDTYRQVI 43
>d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 37.2 bits (85), Expect = 3e-04
Identities = 19/76 (25%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +Y + + QSF I D ++ + LV NK D+E +R V+ LA+
Sbjct: 78 FILVYSLVNQQSFQDIKPMRDQIIRVKRYEKVPVI-LVGNKVDLESEREVSSSEGRALAE 136
Query: 92 SLHLHSFAVSARTGDN 107
SA++
Sbjct: 137 EWGCPFMETSAKSKTM 152
Score = 27.6 bits (60), Expect = 0.46
Identities = 15/93 (16%), Positives = 29/93 (31%), Gaps = 1/93 (1%)
Query: 17 QLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME 76
+ KVV+LG GK + +G ++ F+ + L
Sbjct: 3 EYKVVVLGSGGVGKSAL-TVQFVTGTFIEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGT 61
Query: 77 HQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109
Q + + K Q L V+ ++ +
Sbjct: 62 EQFASMRDLYIKNGQGFILVYSLVNQQSFQDIK 94
>d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin
(Saguinus oedipus) [TaxId: 9490]}
Length = 168
Score = 36.5 bits (83), Expect = 5e-04
Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + ++ IT +SF + + + L K LV NK D+E +R V++E
Sbjct: 75 SGEGFLCVFSITEMESFAATADFREQI-LRVKEDENVPFLLVGNKSDLEDKRQVSVEEAK 133
Query: 88 KLAQSLHLHSFAVSARTGDN 107
A +++ SA+T N
Sbjct: 134 NRADQWNVNYVETSAKTRAN 153
Score = 26.1 bits (56), Expect = 1.5
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 19 KVVLLGDPSCGK 30
KV+++G GK
Sbjct: 6 KVIMVGSGGVGK 17
>d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF6 [TaxId: 9606]}
Length = 173
Score = 36.1 bits (82), Expect = 6e-04
Identities = 11/78 (14%), Positives = 24/78 (30%), Gaps = 4/78 (5%)
Query: 33 IFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRV---VTLERHAKL 89
IF+ D + +R+ + + ANK D+ + +
Sbjct: 84 IFVVDCADRDRIDEARQELHRIINDREMRDA-IILIFANKQDLPDAMKPHEIQEKLGLTR 142
Query: 90 AQSLHLHSFAVSARTGDN 107
+ + + A +GD
Sbjct: 143 IRDRNWYVQPSCATSGDG 160
Score = 26.5 bits (57), Expect = 1.3
Identities = 4/14 (28%), Positives = 11/14 (78%)
Query: 17 QLKVVLLGDPSCGK 30
++++++LG + GK
Sbjct: 12 EMRILMLGLDAAGK 25
>d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId:
9606]}
Length = 174
Score = 36.0 bits (82), Expect = 7e-04
Identities = 22/80 (27%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
+ +YDITS ++++++ W+ +S + L NK D++ R VT +
Sbjct: 77 GAAGALLVYDITSRETYNALTNWL--TDARMLASQNIVIILCGNKKDLDADREVTFLEAS 134
Query: 88 KLAQSLHLHSFAVSARTGDN 107
+ AQ L SA TG+N
Sbjct: 135 RFAQENELMFLETSALTGEN 154
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 35.9 bits (82), Expect = 8e-04
Identities = 21/77 (27%), Positives = 34/77 (44%), Gaps = 3/77 (3%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+I +YDIT ++F +I W F + + L+ RVVT ++ LA
Sbjct: 77 GIILVYDITDERTFTNIKQW---FKTVNEHANDEAQLLLVGNKSDMETRVVTADQGEALA 133
Query: 91 QSLHLHSFAVSARTGDN 107
+ L + SA+ DN
Sbjct: 134 KELGIPFIESSAKNDDN 150
Score = 28.6 bits (63), Expect = 0.22
Identities = 9/38 (23%), Positives = 17/38 (44%)
Query: 18 LKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH 55
+K++L+GD GK + + + + I T F
Sbjct: 3 MKILLIGDSGVGKSCLLVRFVEDKFNPSFITTIGIDFK 40
>d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 35.4 bits (80), Expect = 0.001
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ + ++ +T SF I + + + L+ NK D++HQR VT E +L
Sbjct: 78 EGFLLVFSVTDRGSFEEIYKFQRQILRVKDRDEFPMI-LIGNKADLDHQRQVTQEEGQQL 136
Query: 90 AQSLHLHSFAVSARTGDN 107
A+ L + SA+ N
Sbjct: 137 ARQLKVTYMEASAKIRMN 154
Score = 26.9 bits (58), Expect = 1.0
Identities = 4/14 (28%), Positives = 9/14 (64%)
Query: 17 QLKVVLLGDPSCGK 30
+ ++V++G GK
Sbjct: 5 KYRLVVVGGGGVGK 18
>d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 166
Score = 35.3 bits (80), Expect = 0.001
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ + ++ I + +SF I + + K S + LV NK D+ + V +
Sbjct: 74 TGEGFLCVFAINNTKSFEDIHQYRE-QIKRVKDSDDVPMVLVGNKCDLAARTV-ESRQAQ 131
Query: 88 KLAQSLHLHSFAVSARTGDN 107
LA+S + SA+T
Sbjct: 132 DLARSYGIPYIETSAKTRQG 151
Score = 27.3 bits (59), Expect = 0.77
Identities = 6/34 (17%), Positives = 15/34 (44%), Gaps = 3/34 (8%)
Query: 17 QLKVVLLGDPSCGK---IVIFMYDITSGQSFHSI 47
+ K+V++G GK + + + + +I
Sbjct: 3 EYKLVVVGAGGVGKSALTIQLIQNHFVDEYDPTI 36
>d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 34.9 bits (79), Expect = 0.002
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 2/80 (2%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
+ +YDIT ++F+ + +W L + SS+ + L+ NK D+E +R V E
Sbjct: 75 GAAGALLVYDITRRETFNHLTSW--LEDARQHSSSNMVIMLIGNKSDLESRRDVKREEGE 132
Query: 88 KLAQSLHLHSFAVSARTGDN 107
A+ L SA+T N
Sbjct: 133 AFAREHGLIFMETSAKTACN 152
Score = 26.4 bits (57), Expect = 1.4
Identities = 5/13 (38%), Positives = 8/13 (61%)
Query: 18 LKVVLLGDPSCGK 30
K +++GD GK
Sbjct: 4 FKYIIIGDTGVGK 16
>d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId:
9606]}
Length = 186
Score = 33.7 bits (76), Expect = 0.005
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 1/77 (1%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+ M+D+TS QSF ++ W+ N P + L+ NK D+ QR V + +LA
Sbjct: 90 GFLLMFDLTSQQSFLNVRNWMSQLQANAYCENP-DIVLIGNKADLPDQREVNERQARELA 148
Query: 91 QSLHLHSFAVSARTGDN 107
+ F SA TG N
Sbjct: 149 DKYGIPYFETSAATGQN 165
Score = 32.2 bits (72), Expect = 0.017
Identities = 10/43 (23%), Positives = 17/43 (39%)
Query: 13 NYEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH 55
+Y+ +K++ LGD GK + + I T F
Sbjct: 1 DYDYLIKLLALGDSGVGKTTFLYRYTDNKFNPKFITTVGIDFR 43
>d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 167
Score = 33.4 bits (75), Expect = 0.005
Identities = 21/80 (26%), Positives = 32/80 (40%), Gaps = 2/80 (2%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
I +YDIT ++F ++ W + L + VA+ NK D+ R V
Sbjct: 76 GSAAAIIVYDITKEETFSTLKNW--VRELRQHGPPSIVVAIAGNKCDLTDVREVMERDAK 133
Query: 88 KLAQSLHLHSFAVSARTGDN 107
A S+H SA+ N
Sbjct: 134 DYADSIHAIFVETSAKNAIN 153
Score = 27.7 bits (60), Expect = 0.57
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 3/42 (7%)
Query: 17 QLKVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFH 55
+LKV LLGD GK + F+ D +I
Sbjct: 4 ELKVCLLGDTGVGKSSIMWRFVEDSFDPNINPTIGASFMTKT 45
>d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId:
10090]}
Length = 179
Score = 33.5 bits (75), Expect = 0.005
Identities = 11/94 (11%), Positives = 27/94 (28%), Gaps = 1/94 (1%)
Query: 16 IQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75
++ K+V++GD CGK + ++ + V + + L
Sbjct: 1 VKCKIVVVGDSQCGKTAL-LHVFAKDCFPENYVPTVFENYTASFEIDTQRIELSLWDTSG 59
Query: 76 EHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109
+ ++ + T D+
Sbjct: 60 SPYYDNVRPLSYPDSDAVLICFDISRPETLDSVL 93
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 33.3 bits (75), Expect = 0.006
Identities = 29/77 (37%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
I MYDIT+ +SF+++ W V LV NK DME +RVV+ ER +LA
Sbjct: 80 GFILMYDITNEESFNAVQDWSTQIKTYSWD--NAQVLLVGNKCDMEDERVVSSERGRQLA 137
Query: 91 QSLHLHSFAVSARTGDN 107
L F SA+ N
Sbjct: 138 DHLGFEFFEASAKDNIN 154
>d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL3 [TaxId: 10090]}
Length = 176
Score = 33.4 bits (75), Expect = 0.006
Identities = 15/81 (18%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR---VVTLERH 86
I+I++ D + F + K S V + ANK D+ + +
Sbjct: 85 DILIYVIDSADRKRFEETGQELTELLEEEKLSCVP-VLIFANKQDLLTAAPASEIAEGLN 143
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
+ + SA TG+
Sbjct: 144 LHTIRDRVWQIQSCSALTGEG 164
Score = 28.4 bits (62), Expect = 0.33
Identities = 6/43 (13%), Positives = 19/43 (44%)
Query: 17 QLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRK 59
+++++LLG + GK + + S + ++ + +
Sbjct: 16 EVRILLLGLDNAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ 58
>d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 170
Score = 32.7 bits (73), Expect = 0.009
Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 1/81 (1%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYV-ALVANKGDMEHQRVVTLERH 86
+ + +YD+T QSF WV H + + +R V E
Sbjct: 75 NAQAALVVYDVTKPQSFIKARHWVKELHEQASKDIIIALVGNKIDMLQEGGERKVAREEG 134
Query: 87 AKLAQSLHLHSFAVSARTGDN 107
KLA+ L F SA+TG+N
Sbjct: 135 EKLAEEKGLLFFETSAKTGEN 155
Score = 27.7 bits (60), Expect = 0.45
Identities = 9/41 (21%), Positives = 19/41 (46%), Gaps = 3/41 (7%)
Query: 18 LKVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFH 55
+K+VLLG+ + GK ++ F+ + + +I
Sbjct: 4 IKLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIGAAFLTQR 44
>d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId:
9606]}
Length = 173
Score = 32.7 bits (73), Expect = 0.010
Identities = 21/80 (26%), Positives = 31/80 (38%), Gaps = 1/80 (1%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G + ++ I QSF+ + + V LV NK D+E QR V +
Sbjct: 77 AGHGFLLVFAINDRQSFNEVGKLFTQILRVKDRDDFPVV-LVGNKADLESQRQVPRSEAS 135
Query: 88 KLAQSLHLHSFAVSARTGDN 107
S H+ F SA+ N
Sbjct: 136 AFGASHHVAYFEASAKLRLN 155
Score = 27.3 bits (59), Expect = 0.75
Identities = 5/14 (35%), Positives = 8/14 (57%)
Query: 17 QLKVVLLGDPSCGK 30
K+V++G GK
Sbjct: 6 THKLVVVGGGGVGK 19
>d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast
(Saccharomyces cerevisiae), ARL1 [TaxId: 4932]}
Length = 182
Score = 32.6 bits (73), Expect = 0.010
Identities = 16/79 (20%), Positives = 25/79 (31%), Gaps = 4/79 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ---RVVTLERHAK 88
VIF+ D T + + L + + ANK D V+ E +
Sbjct: 88 VIFVVDSTDKDRMSTASKELHLMLQEEELQDAALLV-FANKQDQPGALSASEVSKELNLV 146
Query: 89 LAQSLHLHSFAVSARTGDN 107
+ A SA G+
Sbjct: 147 ELKDRSWSIVASSAIKGEG 165
Score = 27.6 bits (60), Expect = 0.54
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 1/39 (2%)
Query: 17 QLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH 55
+L++++LG GK I Y + G+ + PT
Sbjct: 17 ELRILILGLDGAGKTTIL-YRLQIGEVVTTKPTIGFNVE 54
>d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 32.7 bits (73), Expect = 0.010
Identities = 15/115 (13%), Positives = 34/115 (29%), Gaps = 15/115 (13%)
Query: 6 MLNLHNDNYEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTY 65
L L + + + + + + + S SF ++ + +TP
Sbjct: 54 NLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVSPASFENVRAKWYPEVRHHCPNTP-- 111
Query: 66 VALVANKGDMEHQRVVTLERHA------------KLAQSLHLHSFA-VSARTGDN 107
+ LV K D+ + + +A+ + + SA T
Sbjct: 112 IILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVKYLECSALTQRG 166
Score = 28.8 bits (63), Expect = 0.18
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 3/37 (8%)
Query: 17 QLKVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTW 50
+K V++GD + GK ++ + + G+ ++
Sbjct: 5 AIKCVVVGDGAVGKTCLLISYTTNAFPGEYIPTVFDN 41
>d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]}
Length = 167
Score = 32.3 bits (72), Expect = 0.012
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G+ +Y IT+ +F+ + + + + + LV NK D+E +RVV E+
Sbjct: 74 NGQGFALVYSITAQSTFNDLQDLREQILRVKDTEDVPMI-LVGNKCDLEDERVVGKEQGQ 132
Query: 88 KLAQSLH-LHSFAVSARTGDN 107
LA+ SA++ N
Sbjct: 133 NLARQWCNCAFLESSAKSKIN 153
Score = 28.4 bits (62), Expect = 0.32
Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
Query: 17 QLKVVLLGDPSCGK---IVIFMYDITSGQSFHSI 47
+ K+V+LG GK V F+ I + +I
Sbjct: 3 EYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTI 36
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 32.1 bits (72), Expect = 0.015
Identities = 7/18 (38%), Positives = 12/18 (66%)
Query: 13 NYEIQLKVVLLGDPSCGK 30
+Y+ K+VL+G+ GK
Sbjct: 1 DYDFLFKIVLIGNAGVGK 18
Score = 30.2 bits (67), Expect = 0.072
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 2/77 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLA 90
+I YDIT +SF +P W+ + T LV NK D+ +R V+ +R + +
Sbjct: 80 ALILTYDITCEESFRCLPEWLREIEQYASNKVITV--LVGNKIDLAERREVSQQRAEEFS 137
Query: 91 QSLHLHSFAVSARTGDN 107
++ ++ SA+ DN
Sbjct: 138 EAQDMYYLETSAKESDN 154
>d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 31.5 bits (70), Expect = 0.024
Identities = 22/76 (28%), Positives = 32/76 (42%), Gaps = 2/76 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
I +YDIT+ +SF WV + +AL NK D+ ++R V + A
Sbjct: 82 AIVVYDITNEESFARAKNWVKELQRQASPNIV--IALSGNKADLANKRAVDFQEAQSYAD 139
Query: 92 SLHLHSFAVSARTGDN 107
L SA+T N
Sbjct: 140 DNSLLFMETSAKTSMN 155
Score = 29.2 bits (64), Expect = 0.13
Identities = 10/43 (23%), Positives = 17/43 (39%), Gaps = 3/43 (6%)
Query: 16 IQLKVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFH 55
Q K+VLLG+ + GK ++ F+ +I
Sbjct: 5 CQFKLVLLGESAVGKSSLVLRFVKGQFHEFQESTIGAAFLTQT 47
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 31.0 bits (69), Expect = 0.040
Identities = 9/42 (21%), Positives = 17/42 (40%)
Query: 14 YEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH 55
Y+ K++L+G+ GK + + + I T F
Sbjct: 3 YDYLFKLLLIGNSGVGKSCLLLRFSDDTYTNDYISTIGVDFK 44
>d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]}
Length = 174
Score = 30.7 bits (68), Expect = 0.042
Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 2/78 (2%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLF--HLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+ + + QSF ++ W F + + K ++ NK D+ ++V T E A
Sbjct: 82 CLLTFSVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDISERQVSTEEAQAWC 141
Query: 90 AQSLHLHSFAVSARTGDN 107
+ F SA+ N
Sbjct: 142 RDNGDYPYFETSAKDATN 159
Score = 26.8 bits (58), Expect = 0.95
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 3/34 (8%)
Query: 18 LKVVLLGDPSCGK---IVIFMYDITSGQSFHSIP 48
KV+LLGD GK + ++ + Q FH+I
Sbjct: 7 FKVILLGDGGVGKSSLMNRYVTNKFDTQLFHTIG 40
>d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 164
Score = 30.8 bits (68), Expect = 0.047
Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ ++ T +SF +I +W + ALV NK D+ + E LA+
Sbjct: 78 CVLVFSTTDRESFEAISSWREKVVAEVG---DIPTALVQNKIDLLDDSCIKNEEAEGLAK 134
Query: 92 SLHLHSFAVSARTGDN 107
L L + S + N
Sbjct: 135 RLKLRFYRTSVKEDLN 150
Score = 29.7 bits (65), Expect = 0.11
Identities = 5/15 (33%), Positives = 12/15 (80%)
Query: 16 IQLKVVLLGDPSCGK 30
+ +K+V++G+ + GK
Sbjct: 1 VAIKMVVVGNGAVGK 15
>d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth
inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 30.8 bits (68), Expect = 0.050
Identities = 24/76 (31%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQ 91
+ +YDIT SF + ++ +K T + V NK D++H R V+ E KLA
Sbjct: 76 FVLVYDITDRGSFEEVLPLKNILDEIKKPKNVTLIL-VGNKADLDHSRQVSTEEGEKLAT 134
Query: 92 SLHLHSFAVSARTGDN 107
L + SA TG+
Sbjct: 135 ELACAFYECSACTGEG 150
Score = 27.3 bits (59), Expect = 0.70
Identities = 4/14 (28%), Positives = 8/14 (57%)
Query: 17 QLKVVLLGDPSCGK 30
++K+ + G GK
Sbjct: 2 EVKLAIFGRAGVGK 15
>d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]}
Length = 177
Score = 30.7 bits (68), Expect = 0.052
Identities = 11/67 (16%), Positives = 28/67 (41%)
Query: 16 IQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDM 75
I+ K+V++GD +CGK + + + +PT + + + + + + +
Sbjct: 1 IRKKLVIVGDGACGKTCLLIVNSKDQFPEVYVPTVFENYVADIEVDGKQVELALWDTAGL 60
Query: 76 EHQRVVT 82
E +
Sbjct: 61 EDYDRLR 67
>d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARF1 [TaxId: 9606]}
Length = 160
Score = 30.4 bits (67), Expect = 0.061
Identities = 10/79 (12%), Positives = 26/79 (32%), Gaps = 2/79 (2%)
Query: 31 IVIFMYDITSGQSFHSIPTWVD--LFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAK 88
+IF+ D + + + L + + A + + + +T +
Sbjct: 70 GLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLH 129
Query: 89 LAQSLHLHSFAVSARTGDN 107
+ + + A A +GD
Sbjct: 130 SLRHRNWYIQATCATSGDG 148
Score = 27.7 bits (60), Expect = 0.50
Identities = 8/33 (24%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Query: 18 LKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTW 50
++++++G + GK I + G+ +IPT
Sbjct: 1 MRILMVGLDAAGKTTILYK-LKLGEIVTTIPTI 32
>d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]}
Length = 170
Score = 30.0 bits (66), Expect = 0.072
Identities = 8/16 (50%), Positives = 12/16 (75%)
Query: 15 EIQLKVVLLGDPSCGK 30
++Q K+VL+GD GK
Sbjct: 1 QVQFKLVLVGDGGTGK 16
Score = 25.8 bits (55), Expect = 2.3
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 2/54 (3%)
Query: 54 FHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDN 107
+ + L NK D++ ++V + + +L + +SA++ N
Sbjct: 98 HRDLVRVCENIPIVLCGNKVDIKDRKVKA--KSIVFHRKKNLQYYDISAKSNYN 149
>d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId:
9606]}
Length = 168
Score = 28.9 bits (63), Expect = 0.16
Identities = 11/64 (17%), Positives = 21/64 (32%)
Query: 44 FHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVSAR 103
+ + + + + + LV NK D+ R V+++ A SA
Sbjct: 86 SFEKASELRVQLRRARQTDDVPIILVGNKSDLVRSREVSVDEGRACAVVFDCKFIETSAA 145
Query: 104 TGDN 107
N
Sbjct: 146 LHHN 149
Score = 25.5 bits (54), Expect = 2.5
Identities = 8/12 (66%), Positives = 9/12 (75%)
Query: 19 KVVLLGDPSCGK 30
KV+LLG P GK
Sbjct: 3 KVLLLGAPGVGK 14
>d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo
sapiens), ARL8A [TaxId: 9606]}
Length = 164
Score = 28.5 bits (62), Expect = 0.22
Identities = 9/83 (10%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDME---HQRVVTLE 84
+++M D + + + + + ++ NK D+ ++ + +
Sbjct: 70 GVSAIVYMVDAADQEKIEASKNELHNLLDKPQLQGIPVL-VLGNKRDLPGALDEKELIEK 128
Query: 85 RHAKLAQSLHLHSFAVSARTGDN 107
+ Q + +++S + DN
Sbjct: 129 MNLSAIQDREICCYSISCKEKDN 151
Score = 27.3 bits (59), Expect = 0.67
Identities = 7/39 (17%), Positives = 14/39 (35%)
Query: 17 QLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFH 55
++++ L+G GK + + IPT
Sbjct: 2 EMELTLVGLQYSGKTTFVNVIASGQFNEDMIPTVGFNMR 40
>d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 175
Score = 28.8 bits (63), Expect = 0.24
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 8/42 (19%)
Query: 17 QLKVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFH 55
+L++ +LGD GK I F+ S+ + +
Sbjct: 5 ELRLGVLGDARSGKSSLIHRFLTG-----SYQVLEKTESEQY 41
>d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 184
Score = 28.5 bits (62), Expect = 0.25
Identities = 11/43 (25%), Positives = 18/43 (41%), Gaps = 3/43 (6%)
Query: 16 IQLKVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFH 55
+ LKV++LGD GK + ++ S Q +I
Sbjct: 1 VLLKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTKE 43
Score = 26.6 bits (57), Expect = 1.1
Identities = 17/82 (20%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLF--HLNRKSSTPTYVALVANKGDMEHQRVVTLER 85
+ ++D+T+ +F ++ +W D F + + ++ NK D+E+++V T
Sbjct: 74 GADCCVLVFDVTAPNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLENRQVATKRA 133
Query: 86 HAKLAQSLHLHSFAVSARTGDN 107
A ++ F SA+ N
Sbjct: 134 QAWCYSKNNIPYFETSAKEAIN 155
>d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId:
9606]}
Length = 185
Score = 28.4 bits (62), Expect = 0.27
Identities = 17/113 (15%), Positives = 36/113 (31%), Gaps = 5/113 (4%)
Query: 14 YEIQLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKG 73
+ LK V++GD + GK + M +PT D + ++ Y+ + +
Sbjct: 6 GALMLKCVVVGDGAVGKTCLLMSYANDAFPEEYVPTVFDHYAVSVTVGGKQYLLGLYDTA 65
Query: 74 DMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKYLQSN 126
E + + + + + N + + LK N
Sbjct: 66 GQEDYDRLRPLSY-----PMTDVFLICFSVVNPASFQNVKEEWVPELKEYAPN 113
>d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo
sapiens), ARL5A [TaxId: 9606]}
Length = 177
Score = 28.4 bits (62), Expect = 0.31
Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 4/79 (5%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQ---RVVTLERHAK 88
VI + D T + + L + + + ANK D++ ++
Sbjct: 86 VIVVVDSTDRERISVTREELY-KMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLT 144
Query: 89 LAQSLHLHSFAVSARTGDN 107
+ H A A TG+
Sbjct: 145 SIKDHQWHIQACCALTGEG 163
Score = 27.7 bits (60), Expect = 0.53
Identities = 9/34 (26%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Query: 17 QLKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTW 50
+ KV+++G + GK I + + H+ PT
Sbjct: 15 EHKVIIVGLDNAGKTTILYQ-FSMNEVVHTSPTI 47
>d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo
sapiens) [TaxId: 9606]}
Length = 167
Score = 28.2 bits (61), Expect = 0.32
Identities = 14/66 (21%), Positives = 25/66 (37%)
Query: 42 QSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKLAQSLHLHSFAVS 101
+ + L+ + LV NK D+ +RV++ E LA+S + S
Sbjct: 88 IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHMERVISYEEGKALAESWNAAFLESS 147
Query: 102 ARTGDN 107
A+
Sbjct: 148 AKENQT 153
Score = 26.6 bits (57), Expect = 0.99
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 17 QLKVVLLGDPSCGK 30
K+ +LG S GK
Sbjct: 4 SRKIAILGYRSVGK 17
>d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus
musculus), ARL2 [TaxId: 10090]}
Length = 165
Score = 28.1 bits (61), Expect = 0.40
Identities = 5/14 (35%), Positives = 11/14 (78%)
Query: 17 QLKVVLLGDPSCGK 30
+L++++LG + GK
Sbjct: 2 ELRLLMLGLDNAGK 15
Score = 25.8 bits (55), Expect = 2.2
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 4/81 (4%)
Query: 30 KIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHAKL 89
+I++ D Q + + + + T + + ANK D+ + A
Sbjct: 71 DGLIWVVDSADRQRMQDCQRELQSLLVEERLAGATLL-IFANKQDLPGALSCNAIQEALE 129
Query: 90 AQSL---HLHSFAVSARTGDN 107
S+ H SA TG++
Sbjct: 130 LDSIRSHHWRIQGCSAVTGED 150
>d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 28.0 bits (61), Expect = 0.42
Identities = 10/52 (19%), Positives = 17/52 (32%), Gaps = 8/52 (15%)
Query: 17 QLKVVLLGDPSCGKIVI--------FMYDITSGQSFHSIPTWVDLFHLNRKS 60
+LK++LLG GK T+G + +F +
Sbjct: 2 ELKLLLLGTGESGKSTFIKQMRIIHGSGVPTTGIIEYPFDLQSVIFRMVDVG 53
>d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo
sapiens), ARL1 [TaxId: 9606]}
Length = 169
Score = 27.8 bits (60), Expect = 0.50
Identities = 4/14 (28%), Positives = 10/14 (71%)
Query: 17 QLKVVLLGDPSCGK 30
++++++LG GK
Sbjct: 5 EMRILILGLDGAGK 18
Score = 25.4 bits (54), Expect = 3.0
Identities = 13/83 (15%), Positives = 21/83 (25%), Gaps = 4/83 (4%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV---TLE 84
VI++ D + + + + + ANK DME
Sbjct: 72 NTDAVIYVVDSCDRDRIGISKSELVAMLEEEELRKA-ILVVFANKQDMEQAMTSSEMANS 130
Query: 85 RHAKLAQSLHLHSFAVSARTGDN 107
+ F SA G
Sbjct: 131 LGLPALKDRKWQIFKTSATKGTG 153
>d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]}
Length = 191
Score = 27.7 bits (60), Expect = 0.54
Identities = 6/13 (46%), Positives = 10/13 (76%)
Query: 18 LKVVLLGDPSCGK 30
+K V++GD + GK
Sbjct: 4 IKCVVVGDGAVGK 16
>d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 175
Score = 27.0 bits (58), Expect = 0.89
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 18 LKVVLLGDPSCGK 30
LKV++LGD GK
Sbjct: 3 LKVIILGDSGVGK 15
Score = 25.8 bits (55), Expect = 2.2
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 4/84 (4%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLF--HLNRKSSTPTYVALVANKGDMEHQRVVTLER 85
+ +YD+T+ SF +I +W D F H N S ++ NK D E + + E+
Sbjct: 75 GADCCVLVYDVTNASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESKKIVSEK 134
Query: 86 HAKLAQSLH--LHSFAVSARTGDN 107
A+ + F SA+ N
Sbjct: 135 SAQELAKSLGDIPLFLTSAKNAIN 158
>d2b8na1 c.118.1.1 (A:4-417) Putative glycerate kinase (hypothetical
protein TM1585) {Thermotoga maritima [TaxId: 2336]}
Length = 414
Score = 27.2 bits (60), Expect = 0.96
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 10/38 (26%)
Query: 117 INPLKYLQSNNEYNFLSMVGFEAGTFYMAVKRLTTGPT 154
+P +YL++N+ YN L G L TGPT
Sbjct: 374 EDPYQYLKNNDSYNALKKSG----------ALLITGPT 401
>d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 169
Score = 26.9 bits (58), Expect = 0.97
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 19 KVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFH 55
K+V++GD GK + F I +I
Sbjct: 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIEDSYLKHT 45
>d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor
beta-subunit {Mouse (Mus musculus) [TaxId: 10090]}
Length = 207
Score = 26.9 bits (58), Expect = 1.0
Identities = 7/31 (22%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 19 KVVLLGDPSCGKIVIFMYDITSGQSFHSIPT 49
V+ +G GK ++F+ + +GQ + +
Sbjct: 2 AVLFVGLCDSGKTLLFVR-LLTGQYRDTQTS 31
>d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId:
10090]}
Length = 165
Score = 26.5 bits (57), Expect = 1.3
Identities = 5/13 (38%), Positives = 10/13 (76%)
Query: 18 LKVVLLGDPSCGK 30
K++++GD + GK
Sbjct: 3 FKIIVIGDSNVGK 15
>d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo
sapiens) [TaxId: 9606]}
Length = 172
Score = 26.6 bits (57), Expect = 1.3
Identities = 18/80 (22%), Positives = 26/80 (32%), Gaps = 1/80 (1%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVTLERHA 87
G + +Y IT SF R++ + LV NK D+ R V++
Sbjct: 77 VGDAYLIVYSITDRASFEKASELRIQLRRARQTEDIPII-LVGNKSDLVRCREVSVSEGR 135
Query: 88 KLAQSLHLHSFAVSARTGDN 107
A SA N
Sbjct: 136 ACAVVFDCKFIETSAAVQHN 155
Score = 25.9 bits (55), Expect = 1.9
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 19 KVVLLGDPSCGK---IVIFMYDITSGQSFHSIPTWVDLFH 55
+VVL+G+ GK IF S S +
Sbjct: 5 RVVLIGEQGVGKSTLANIFAGVHDSMDSDCEVLGEDTYER 44
>d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit)
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 195
Score = 26.1 bits (56), Expect = 1.6
Identities = 9/56 (16%), Positives = 19/56 (33%), Gaps = 5/56 (8%)
Query: 17 QLKVVLLGDPSCGKIVI-----FMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVA 67
++K++LLG GK I +++ +G F + +
Sbjct: 2 EVKLLLLGAGESGKSTIVKQMKIIHEAGTGIVETHFTFKDLHFKMFDVGGQRSERK 57
>d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 166
Score = 25.8 bits (55), Expect = 2.2
Identities = 5/12 (41%), Positives = 8/12 (66%)
Query: 19 KVVLLGDPSCGK 30
K++ LG + GK
Sbjct: 2 KLLFLGLDNAGK 13
Score = 24.3 bits (51), Expect = 6.3
Identities = 10/90 (11%), Positives = 24/90 (26%), Gaps = 11/90 (12%)
Query: 28 CGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVVT----- 82
++F+ D + F +D + +V ++ NK D +
Sbjct: 67 EVNGIVFLVDAADPERFDEARVELDALFNIAELKDVPFV-ILGNKIDAPNAVSEAELRSA 125
Query: 83 -----LERHAKLAQSLHLHSFAVSARTGDN 107
++ + F S +
Sbjct: 126 LGLLNTTGSQRIEGQRPVEVFMCSVVMRNG 155
>d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus)
[TaxId: 10029]}
Length = 186
Score = 25.8 bits (55), Expect = 2.2
Identities = 6/14 (42%), Positives = 8/14 (57%)
Query: 17 QLKVVLLGDPSCGK 30
K+V LG + GK
Sbjct: 13 TGKLVFLGLDNAGK 26
Score = 25.0 bits (53), Expect = 4.1
Identities = 10/91 (10%), Positives = 21/91 (23%), Gaps = 16/91 (17%)
Query: 32 VIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQRVV---------- 81
++F+ D + +D + + + ++ NK D
Sbjct: 84 IVFLVDCADHERLLESKEELDSLMTDETIANVPIL-ILGNKIDRPEAISEERLREMFGLY 142
Query: 82 -----TLERHAKLAQSLHLHSFAVSARTGDN 107
K + L F S
Sbjct: 143 GQTTGKGSVSLKELNARPLEVFMCSVLKRQG 173
>d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga
maritima [TaxId: 2336]}
Length = 160
Score = 25.3 bits (54), Expect = 2.7
Identities = 14/98 (14%), Positives = 36/98 (36%), Gaps = 7/98 (7%)
Query: 18 LKVVLLGDPSCGKIVIFMY------DITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVAN 71
L++V++G P+ GK + I + + + + A V +
Sbjct: 1 LRMVIVGKPNVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIRGILFRIVDTAGVRS 60
Query: 72 KGDMEHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCW 109
+ + +R+ +ER + + + F + A + +
Sbjct: 61 ETNDLVERLG-IERTLQEIEKADIVLFVLDASSPLDEE 97
>d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit)
{Cow (Bos taurus) [TaxId: 9913]}
Length = 221
Score = 25.5 bits (55), Expect = 3.4
Identities = 6/17 (35%), Positives = 9/17 (52%)
Query: 14 YEIQLKVVLLGDPSCGK 30
Y +++LLG GK
Sbjct: 3 YRATHRLLLLGAGESGK 19
>d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase
TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]}
Length = 161
Score = 25.1 bits (53), Expect = 4.1
Identities = 7/13 (53%), Positives = 10/13 (76%)
Query: 18 LKVVLLGDPSCGK 30
+KVV+ G P+ GK
Sbjct: 2 MKVVIAGRPNAGK 14
>d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic
domain {Archaeon Methanococcus voltae [TaxId: 2188]}
Length = 258
Score = 24.7 bits (52), Expect = 5.7
Identities = 11/82 (13%), Positives = 26/82 (31%), Gaps = 2/82 (2%)
Query: 20 VVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVALVANKGDMEHQR 79
G GK I + Q+ + +++ + +G +R
Sbjct: 37 TEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDE--EAVSKGEVAQPKAVYIDTEGTFRPER 94
Query: 80 VVTLERHAKLAQSLHLHSFAVS 101
++ + HA + L + V+
Sbjct: 95 IMQMAEHAGIDGQTVLDNTFVA 116
>d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia
coli [TaxId: 562]}
Length = 179
Score = 24.1 bits (51), Expect = 7.2
Identities = 18/107 (16%), Positives = 35/107 (32%), Gaps = 4/107 (3%)
Query: 18 LKVVLLGDPSCGKIVIFMYDITSGQSFHSIPTWVDLFHLNRKSSTPTYVAL--VANKGDM 75
++++LLG P GK + I I T D+ KS + + + G +
Sbjct: 1 MRIILLGAPVAGKGTQAQF-IMEKYGIPQIST-GDMLRAAVKSGSELGKQAKDIMDAGKL 58
Query: 76 EHQRVVTLERHAKLAQSLHLHSFAVSARTGDNCWVNTRTPEINPLKY 122
+V ++AQ + F + + + Y
Sbjct: 59 VTDELVIALVKERIAQEDCRNGFLLDGFPRTIPQADAMKEAGINVDY 105
>d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit)
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 200
Score = 24.5 bits (52), Expect = 7.2
Identities = 6/14 (42%), Positives = 9/14 (64%)
Query: 17 QLKVVLLGDPSCGK 30
+K++LLG GK
Sbjct: 2 LVKILLLGAGESGK 15
>d1owaa_ a.7.1.1 (A:) Spectrin alpha chain {Human (Homo sapiens)
[TaxId: 9606]}
Length = 156
Score = 23.9 bits (51), Expect = 8.2
Identities = 8/15 (53%), Positives = 8/15 (53%)
Query: 84 ERHAKLAQSLHLHSF 98
ER KL S HL F
Sbjct: 44 ERGQKLEDSYHLQVF 58
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.134 0.403
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 567,396
Number of extensions: 23404
Number of successful extensions: 179
Number of sequences better than 10.0: 1
Number of HSP's gapped: 177
Number of HSP's successfully gapped: 109
Length of query: 158
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 80
Effective length of database: 1,336,656
Effective search space: 106932480
Effective search space used: 106932480
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.3 bits)