BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2601
(132 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1YGT|A Chain A, Dynein Light Chain Tctex-1
pdb|3FM7|A Chain A, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
pdb|3FM7|B Chain B, Quaternary Structure Of Drosophila Melanogaster
IcTCTEX-1LC8; Allosteric Interactions Of Dynein Light
Chains With Dynein Intermediate Chain
Length = 111
Score = 140 bits (354), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 81/106 (76%)
Query: 27 EDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVVNG 86
E+S+F VD++S IKEAIE IGGN Y KV+ + QVVE + L K KP+KY+V
Sbjct: 6 EESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTA 65
Query: 87 TVMQKLGAGLHTSSSCLWDDNTDGSCTVRWENKTMYCIVSVYALAL 132
+MQK GAGLHT+SSC W+++TDGSCTVRWENKTMYCIVSV+ LA+
Sbjct: 66 MIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV 111
>pdb|2PG1|E Chain E, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|F Chain F, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|G Chain G, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
pdb|2PG1|H Chain H, Structural Analysis Of A Cytoplasmic Dynein Light Chain-
Intermediate Chain Complex
Length = 111
Score = 135 bits (341), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 79/106 (74%)
Query: 27 EDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVVNG 86
E+S+F VD++S IKEAIE IGGN Y KV+ + QVVE + L K KP+KY+V
Sbjct: 6 EESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTA 65
Query: 87 TVMQKLGAGLHTSSSCLWDDNTDGSCTVRWENKTMYCIVSVYALAL 132
+ QK GAGLHT+SSC W+++TDGSCTVRWENKT YCIVSV+ LA+
Sbjct: 66 XIXQKNGAGLHTASSCYWNNDTDGSCTVRWENKTXYCIVSVFGLAV 111
>pdb|1XDX|A Chain A, Solution Structure Of The Tctex1 Light Chain From
Chlamydomonas Inner Dynein Arm I1
pdb|1XDX|B Chain B, Solution Structure Of The Tctex1 Light Chain From
Chlamydomonas Inner Dynein Arm I1
Length = 114
Score = 120 bits (302), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 56/106 (52%), Positives = 75/106 (70%)
Query: 27 EDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVVNG 86
E++ F D++S IIKE+I+ + Y+ AKVS + S +E + L L+KPFKYVV
Sbjct: 9 EEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTC 68
Query: 87 TVMQKLGAGLHTSSSCLWDDNTDGSCTVRWENKTMYCIVSVYALAL 132
+MQK GAGLHT++SC WD TDGS TVRWENK+MYCI +V+ LA+
Sbjct: 69 IIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114
>pdb|3MX4|A Chain A, Dna Binding And Cleavage By The Giy-Yig Endonuclease
R.Eco29ki Inactive Variant E142q
pdb|3MX4|B Chain B, Dna Binding And Cleavage By The Giy-Yig Endonuclease
R.Eco29ki Inactive Variant E142q
pdb|3MX4|C Chain C, Dna Binding And Cleavage By The Giy-Yig Endonuclease
R.Eco29ki Inactive Variant E142q
pdb|3MX4|D Chain D, Dna Binding And Cleavage By The Giy-Yig Endonuclease
R.Eco29ki Inactive Variant E142q
pdb|3MX4|E Chain E, Dna Binding And Cleavage By The Giy-Yig Endonuclease
R.Eco29ki Inactive Variant E142q
pdb|3MX4|F Chain F, Dna Binding And Cleavage By The Giy-Yig Endonuclease
R.Eco29ki Inactive Variant E142q
pdb|3MX4|G Chain G, Dna Binding And Cleavage By The Giy-Yig Endonuclease
R.Eco29ki Inactive Variant E142q
pdb|3MX4|H Chain H, Dna Binding And Cleavage By The Giy-Yig Endonuclease
R.Eco29ki Inactive Variant E142q
Length = 235
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 63 SQVVETIMANLIKLDKP-FKYVVNGTVMQKLGAGLHTSSSCLWD 105
S ++ T+ A LIK+ KP + VV+G GAG + WD
Sbjct: 156 SDMISTVQAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWD 199
>pdb|3MX1|A Chain A, The Structure Of Giy-Yig Endonuclease R.Eco29ki
Length = 235
Score = 27.7 bits (60), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 63 SQVVETIMANLIKLDKP-FKYVVNGTVMQKLGAGLHTSSSCLWD 105
S ++ T+ A LIK+ KP + VV+G GAG + WD
Sbjct: 156 SDMISTVQAALIKIYKPLWNTVVDGFGNHTPGAGRFAQAKSDWD 199
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 26.9 bits (58), Expect = 3.6, Method: Composition-based stats.
Identities = 13/41 (31%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Query: 1 MEAATQPSTLSTKDVTQSTAAPG--GTTEDSKFAVDEISCI 39
++A+ ++L DV + PG G E+S +A DE+ C+
Sbjct: 627 LDASEALASLGVVDVVTARDVPGDNGREEESLYAQDEVICV 667
>pdb|1XKI|A Chain A, Crystal Structure Of Human Tear LipocalinVON EBNERS
GLAND Protein
pdb|3EYC|A Chain A, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|B Chain B, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|C Chain C, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
pdb|3EYC|D Chain D, New Crystal Structure Of Human Tear Lipocalin In Complex
With 1,4-Butanediol In Space Group P21
Length = 162
Score = 26.6 bits (57), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 26 TEDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVVN 85
T D +F + + + GGN AKV+ +S + + A L K D+P KY +
Sbjct: 19 TVDREFPEMNLESVTPMTLTTLEGGNL--EAKVTMLISGRCQEVKAVLEKTDEPGKYTAD 76
Query: 86 G 86
G
Sbjct: 77 G 77
>pdb|3L6N|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Ind-7
Length = 219
Score = 26.2 bits (56), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 3/70 (4%)
Query: 49 GGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVVNGTVMQKLGAGLHTSSSCLWDDN- 107
G TY +AK + ++ + + +IK KP++ V+ LG G + +W
Sbjct: 92 GIKTYATAKTNEFLKKDGKATSTEIIKTGKPYRIGGEEFVVDFLGEGHTADNVVVWFPKY 151
Query: 108 --TDGSCTVR 115
DG C V+
Sbjct: 152 NVLDGGCLVK 161
>pdb|1VIQ|A Chain A, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|B Chain B, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
pdb|1VIQ|C Chain C, Crystal Structure Of Putative Adp Ribose Pyrophosphatase
Length = 220
Score = 25.8 bits (55), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 30/77 (38%), Gaps = 15/77 (19%)
Query: 12 TKDVTQSTAAPGGTTEDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMA 71
TK V A+PGGT+E S V E+ I N E I
Sbjct: 125 TKPVLSFLASPGGTSERSSIMVGEVDATTASGIHGLADEN---------------EDIRV 169
Query: 72 NLIKLDKPFKYVVNGTV 88
+++ ++ +++V G +
Sbjct: 170 HVVSREQAYQWVEEGKI 186
>pdb|1G0S|A Chain A, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G0S|B Chain B, The Crystal Structure Of The E.Coli Adp-Ribose
Pyrophosphatase
pdb|1G9Q|A Chain A, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1G9Q|B Chain B, Complex Structure Of The Adpr-Ase And Its Substrate Adp-
Ribose
pdb|1GA7|A Chain A, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1GA7|B Chain B, Crystal Structure Of The Adp-Ribose Pyrophosphatase In
Complex With Gd+3
pdb|1KHZ|A Chain A, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
pdb|1KHZ|B Chain B, Structure Of The Adpr-Ase In Complex With Ampcpr And Mg
Length = 209
Score = 25.8 bits (55), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 11 STKDVTQSTAAPGGTTEDSKFAVDEISC 38
TK V A+PGGT+E S V E+
Sbjct: 123 RTKPVLSFLASPGGTSERSSIMVGEVDA 150
>pdb|1J71|A Chain A, Structure Of The Extracellular Aspartic Proteinase From
Candida Tropicalis Yeast
Length = 334
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 20/38 (52%)
Query: 83 VVNGTVMQKLGAGLHTSSSCLWDDNTDGSCTVRWENKT 120
+V G+ QK + T SS LW +TD C V + +T
Sbjct: 18 IVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQT 55
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.126 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,855,963
Number of Sequences: 62578
Number of extensions: 139124
Number of successful extensions: 273
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 264
Number of HSP's gapped (non-prelim): 14
length of query: 132
length of database: 14,973,337
effective HSP length: 88
effective length of query: 44
effective length of database: 9,466,473
effective search space: 416524812
effective search space used: 416524812
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 46 (22.3 bits)