Query psy2601
Match_columns 132
No_of_seqs 112 out of 494
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 20:22:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2601.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2601hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1xdx_A Tctex1 light chain prot 100.0 7E-43 2.4E-47 243.6 13.5 110 23-132 4-114 (114)
2 1ygt_A Cytoplasmic dynein ligh 100.0 1.1E-42 3.7E-47 241.7 13.4 109 24-132 3-111 (111)
3 2wtg_A Globin-like protein; me 35.9 83 0.0029 21.7 5.5 40 35-77 113-155 (159)
4 2wp7_A PPPDE peptidase domain- 29.6 69 0.0024 22.7 4.2 42 28-69 76-119 (168)
5 2rpb_A Hypothetical membrane p 29.0 1.1E+02 0.0037 19.2 5.6 43 34-76 52-96 (113)
6 2qzi_A Uncharacterized protein 26.6 54 0.0019 21.6 2.9 30 28-57 56-85 (103)
7 2dme_A PHD finger protein 3; P 22.6 1.1E+02 0.0038 20.2 4.0 43 32-74 8-56 (120)
8 2oba_A Probable 6-pyruvoyl tet 20.2 2.1E+02 0.007 19.3 6.9 61 28-96 67-133 (138)
9 1use_A VAsp, vasodilator-stimu 18.0 1.1E+02 0.0039 17.0 2.7 37 34-77 7-43 (45)
10 1h3l_A RNA polymerase sigma fa 17.3 1.4E+02 0.0049 17.3 3.4 37 32-68 35-73 (87)
No 1
>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer, solution structure, contractIle protein; NMR {Chlamydomonas reinhardtii}
Probab=100.00 E-value=7e-43 Score=243.60 Aligned_cols=110 Identities=51% Similarity=0.893 Sum_probs=106.7
Q ss_pred CCCC-CCCCCCHHHHHHHHHHHHHhhhCCCCcCchhHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEEeCCcceeeeee
Q psy2601 23 GGTT-EDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVVNGTVMQKLGAGLHTSSS 101 (132)
Q Consensus 23 ~~p~-~~~~F~~~~v~~ii~~vl~~~L~~~~Y~~~~~~~~~~~I~~~I~~~lk~l~~ryK~vV~v~I~qk~gqgi~~as~ 101 (132)
.+|+ ++.+|++++|+.||+++|++.|++..|+++++.+|++.|++.|+++|++|++||||||+|+|+|++|||++++|+
T Consensus 4 ~~p~~~~~~f~~~~v~~ii~~~l~~~L~~~~Y~~~~~~~~~~~i~~~i~~~lk~l~~~YK~iV~v~I~q~~gqGi~~as~ 83 (114)
T 1xdx_A 4 VDPAVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVVTCIIMQKNGAGLHTAAS 83 (114)
T ss_dssp CCSSTTCCSCCCHHHHHHHHHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHHHHHHTCSSEEEEEEEEECTTTSCCEEEEE
T ss_pred cCCCccCCCCCHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEEcCCCceeeeee
Confidence 3566 678999999999999999999999999999999999999999999999999899999999999999999999999
Q ss_pred eeecCCCCCeEEEEEEcCcEEEEEEEEEEeC
Q psy2601 102 CLWDDNTDGSCTVRWENKTMYCIVSVYALAL 132 (132)
Q Consensus 102 ~lWD~~~D~~~~~~~~n~~~~~v~tVf~iy~ 132 (132)
|+||+++|||++++|+|++|+|+++|||+||
T Consensus 84 c~WD~~~D~~~s~~~~n~sl~~v~tVfgv~i 114 (114)
T 1xdx_A 84 CWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114 (114)
T ss_dssp ECSCSSSCCCEEEEEESSSCEEEEEEEEECC
T ss_pred eeEcCCCCCEEEEEEECCCEEEEEEEEEEEC
Confidence 9999999999999999999999999999997
No 2
>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport; 1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
Probab=100.00 E-value=1.1e-42 Score=241.66 Aligned_cols=109 Identities=60% Similarity=1.029 Sum_probs=103.2
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHhhhCCCCcCchhHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEEeCCcceeeeeeee
Q psy2601 24 GTTEDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVVNGTVMQKLGAGLHTSSSCL 103 (132)
Q Consensus 24 ~p~~~~~F~~~~v~~ii~~vl~~~L~~~~Y~~~~~~~~~~~I~~~I~~~lk~l~~ryK~vV~v~I~qk~gqgi~~as~~l 103 (132)
+|.++.+|++++|+.||+++|++.|++..|+++++.+|++.|++.|+++|++|++||||||+|+|+|++|||++++|+|+
T Consensus 3 ~~~~~~~F~~~~v~~ii~~~l~~~L~~~~Y~~~~~~~~~~~i~~~i~~~lk~l~~~YK~iV~v~I~q~~gqG~~~as~c~ 82 (111)
T 1ygt_A 3 DSREESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIVTAMIMQKNGAGLHTASSCY 82 (111)
T ss_dssp -----CCCCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEEEEEEECSSCCCCCCCCCC
T ss_pred CcccCCCCCHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHHHHHHHHHHHhhCCCceEEEEEEEEEcCCCceeeeeeeE
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCeEEEEEEcCcEEEEEEEEEEeC
Q psy2601 104 WDDNTDGSCTVRWENKTMYCIVSVYALAL 132 (132)
Q Consensus 104 WD~~~D~~~~~~~~n~~~~~v~tVf~iy~ 132 (132)
||+++|||++++|+|++|+|+++|||+||
T Consensus 83 WD~~~D~~~s~~~~n~sl~~v~tVfgv~i 111 (111)
T 1ygt_A 83 WNNDTDGSCTVRWENKTMYCIVSVFGLAV 111 (111)
T ss_dssp SCTTTCEEEEEEEECSSEEEEEEEEEEEC
T ss_pred EcCCCCCeEEEEEECCCEEEEEEEEEEEC
Confidence 99999999999999999999999999997
No 3
>2wtg_A Globin-like protein; metal-binding, oxygen transport; HET: HEM; 1.50A {Caenorhabditis elegans} PDB: 2wth_A*
Probab=35.93 E-value=83 Score=21.74 Aligned_cols=40 Identities=8% Similarity=0.140 Sum_probs=31.1
Q ss_pred HHHHHHHHHHHhhhCCCCcCchhHHHHHH---HHHHHHHHHHhccC
Q psy2601 35 EISCIIKEAIEDCIGGNTYNSAKVSTYVS---QVVETIMANLIKLD 77 (132)
Q Consensus 35 ~v~~ii~~vl~~~L~~~~Y~~~~~~~~~~---~I~~~I~~~lk~l~ 77 (132)
.+..++-++|.+.| .+++.....|.. .|++.|...|++++
T Consensus 113 ~v~~~Ll~~L~~~l---~~t~~~~~AW~~~~~~i~~~i~~~~~~~~ 155 (159)
T 2wtg_A 113 AFFTVFTGYLESVG---SLNDQQKAAWMALGKEFNAESQTHLKNSN 155 (159)
T ss_dssp HHHHHHHHHHTTTS---CCCHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHc---CCCHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 36666777777777 388888888876 56889999999988
No 4
>2wp7_A PPPDE peptidase domain-containing protein 2; hydrolase, phosphoprotein, ubiquitin-like protein; 1.90A {Mus musculus} PDB: 3ebq_A
Probab=29.62 E-value=69 Score=22.75 Aligned_cols=42 Identities=14% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCCcC--chhHHHHHHHHHHHH
Q psy2601 28 DSKFAVDEISCIIKEAIEDCIGGNTYN--SAKVSTYVSQVVETI 69 (132)
Q Consensus 28 ~~~F~~~~v~~ii~~vl~~~L~~~~Y~--~~~~~~~~~~I~~~I 69 (132)
...++.+++++++++.=.+.+.+..|| ...|...++++|+.+
T Consensus 76 ~T~~~~~~~~~~l~~l~~~~~~g~~Y~Ll~~NCNhFs~~l~~~L 119 (168)
T 2wp7_A 76 NTEVTEEIFLEYLSSLGESLFRGEAYNLFEHNCNTFSNEVAQFL 119 (168)
T ss_dssp EECCCHHHHHHHHHHHHTTTCSGGGCBTTTBSHHHHHHHHHHHH
T ss_pred CccCCHHHHHHHHHHhhhccCCcccCchhhhccchhHHHHHHHh
Confidence 356899999999987644448888998 366666666665543
No 5
>2rpb_A Hypothetical membrane protein; SPFH domain; NMR {Pyrococcus horikoshii}
Probab=29.05 E-value=1.1e+02 Score=19.16 Aligned_cols=43 Identities=9% Similarity=0.048 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHhhhCCCCcCch--hHHHHHHHHHHHHHHHHhcc
Q psy2601 34 DEISCIIKEAIEDCIGGNTYNSA--KVSTYVSQVVETIMANLIKL 76 (132)
Q Consensus 34 ~~v~~ii~~vl~~~L~~~~Y~~~--~~~~~~~~I~~~I~~~lk~l 76 (132)
+.++.+++..|++.++...++.- .-..++..|.+.+.+.+..+
T Consensus 52 ~~l~~~~~~~lR~vig~~~l~ei~~~R~~i~~~i~~~l~~~~~~~ 96 (113)
T 2rpb_A 52 MAIVKLAQTNLRAIIGEMELDETLSGRDIINARLREELDKITDRW 96 (113)
T ss_dssp HHHHHHHHHHHHHHHTSCCTTHHHHCHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHhcCcHHHHHhCHHHHHHHHHHHHHHHHHhc
Confidence 45777778888888887666642 22334444444444444443
No 6
>2qzi_A Uncharacterized protein; APC86636, streptococcus thermophilus LMG 18311, structural G PSI-2, protein structure initiative; 2.20A {Streptococcus thermophilus}
Probab=26.61 E-value=54 Score=21.61 Aligned_cols=30 Identities=13% Similarity=0.057 Sum_probs=26.4
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCCcCchh
Q psy2601 28 DSKFAVDEISCIIKEAIEDCIGGNTYNSAK 57 (132)
Q Consensus 28 ~~~F~~~~v~~ii~~vl~~~L~~~~Y~~~~ 57 (132)
..+...++|+.+++..|+..+.+..|+.++
T Consensus 56 ~R~I~~~EIefii~~lLk~~i~~~~~~~~~ 85 (103)
T 2qzi_A 56 HRAVKDNELEVIREFFLKRKIDKDIVLMDK 85 (103)
T ss_dssp SSCCCHHHHHHHHHHHHHHTCCGGGBCTTC
T ss_pred CCcCCHHHHHHHHHHHHhcccccccccccc
Confidence 457899999999999999999998898754
No 7
>2dme_A PHD finger protein 3; PHF3, TFS2M, glioblastoma multiforme, brain tumor, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.62 E-value=1.1e+02 Score=20.24 Aligned_cols=43 Identities=9% Similarity=0.276 Sum_probs=21.8
Q ss_pred CHHHHHHHHHHHHHhhh----CCCCc--CchhHHHHHHHHHHHHHHHHh
Q psy2601 32 AVDEISCIIKEAIEDCI----GGNTY--NSAKVSTYVSQVVETIMANLI 74 (132)
Q Consensus 32 ~~~~v~~ii~~vl~~~L----~~~~Y--~~~~~~~~~~~I~~~I~~~lk 74 (132)
..+.++.-+++.|.+.| .+..+ ....+..++..|-+.|-+...
T Consensus 8 ~~d~~Rd~~r~~L~eaL~~~~~~~~~~~~~~~~~~lA~~IE~~lf~~~~ 56 (120)
T 2dme_A 8 SADQIRQSVRHSLKDILMKRLTDSNLKVPEEKAAKVATKIEKELFSFFR 56 (120)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCchHHHHHHHHHHHHHHHhccccccccchhHHHHHHHHHHHHHHHHcC
Confidence 34455555554444444 44333 234556666666666555544
No 8
>2oba_A Probable 6-pyruvoyl tetrahydrobiopterin synthase; tetrahydrobiopterin biosynthesis, PTP synthase, PTPS, lyase; 2.33A {Pseudomonas aeruginosa} PDB: 3qn0_A 3qn9_A 3qna_A*
Probab=20.25 E-value=2.1e+02 Score=19.27 Aligned_cols=61 Identities=15% Similarity=0.094 Sum_probs=35.2
Q ss_pred CCCCCHHHHHHHHHHHHHhhhCCCC------cCchhHHHHHHHHHHHHHHHHhccCCCceEEEEEEEEEeCCcce
Q psy2601 28 DSKFAVDEISCIIKEAIEDCIGGNT------YNSAKVSTYVSQVVETIMANLIKLDKPFKYVVNGTVMQKLGAGL 96 (132)
Q Consensus 28 ~~~F~~~~v~~ii~~vl~~~L~~~~------Y~~~~~~~~~~~I~~~I~~~lk~l~~ryK~vV~v~I~qk~gqgi 96 (132)
.--.+-.++++++++++ +.|+..- .....+..++.-|.+ +|+..-+. +..|.+-|-.+++.
T Consensus 67 GmV~Df~~lk~~~~~vi-~~lDH~~Lndv~~~~~pTaEnlA~~i~~----~L~~~lp~---l~~V~v~Et~~~~a 133 (138)
T 2oba_A 67 GWIRDFAEIKAIFKPIY-EQLDHNYLNDIPGLENPTSENLCRWIWQ----QLKPLLPE---LSKVRVHETCTSGC 133 (138)
T ss_dssp SSSSCHHHHHHHHHHHH-HHHTTSBGGGSTTCSSCCHHHHHHHHHH----HHGGGCTT---EEEEEEESSTTEEE
T ss_pred CEEEeHHHHHHHHHHHH-HhCCCccchhcCCCCCCCHHHHHHHHHH----HHHHhCCC---eEEEEEEECCCCEE
Confidence 34468899999999977 6666532 223445555555544 44443332 45566666555443
No 9
>1use_A VAsp, vasodilator-stimulated phosphoprotein; signaling protein, null; 1.3A {Homo sapiens} SCOP: h.1.29.1 PDB: 1usd_A
Probab=18.03 E-value=1.1e+02 Score=17.02 Aligned_cols=37 Identities=14% Similarity=0.310 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhhhCCCCcCchhHHHHHHHHHHHHHHHHhccC
Q psy2601 34 DEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLD 77 (132)
Q Consensus 34 ~~v~~ii~~vl~~~L~~~~Y~~~~~~~~~~~I~~~I~~~lk~l~ 77 (132)
.+++.+=+++|.+.= .+.+..-++|.+.|+..|.+.+
T Consensus 7 ~dle~~KqEIL~E~R-------kElqK~K~EIIeAi~~El~~~~ 43 (45)
T 1use_A 7 SDLQRVKQELLEEVK-------KELQKVKEEIIEAFVQELRKRG 43 (45)
T ss_dssp HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhcC
Confidence 344444444444443 2356666778888777776543
No 10
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=17.31 E-value=1.4e+02 Score=17.29 Aligned_cols=37 Identities=3% Similarity=0.273 Sum_probs=27.4
Q ss_pred CHHHHHHHHHHHHHhhhCC-CCcCc-hhHHHHHHHHHHH
Q psy2601 32 AVDEISCIIKEAIEDCIGG-NTYNS-AKVSTYVSQVVET 68 (132)
Q Consensus 32 ~~~~v~~ii~~vl~~~L~~-~~Y~~-~~~~~~~~~I~~~ 68 (132)
+.+.+++++++++-..++. ..|++ .....|.-.|+..
T Consensus 35 ~~~~aeD~vQe~fl~~~~~~~~~~~~~~~~~wl~~i~~n 73 (87)
T 1h3l_A 35 NPADAEDLVQETYAKAYASFHQFREGTNLKAWLYRILTN 73 (87)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGCCSSSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHH
Confidence 4788999999999887765 35654 4677888887753
Done!