RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy2601
         (132 letters)



>1ygt_A Cytoplasmic dynein light chain; domain swapping, protein transport;
           1.70A {Drosophila melanogaster} PDB: 2pg1_E 3fm7_A
          Length = 111

 Score =  132 bits (333), Expect = 2e-41
 Identities = 65/108 (60%), Positives = 82/108 (75%)

Query: 25  TTEDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVV 84
           + E+S+F VD++S  IKEAIE  IGGN Y   KV+ +  QVVE  +  L K  KP+KY+V
Sbjct: 4   SREESQFIVDDVSKTIKEAIETTIGGNAYQHDKVNNWTGQVVENCLTVLTKEQKPYKYIV 63

Query: 85  NGTVMQKLGAGLHTSSSCLWDDNTDGSCTVRWENKTMYCIVSVYALAL 132
              +MQK GAGLHT+SSC W+++TDGSCTVRWENKTMYCIVSV+ LA+
Sbjct: 64  TAMIMQKNGAGLHTASSCYWNNDTDGSCTVRWENKTMYCIVSVFGLAV 111


>1xdx_A Tctex1 light chain protein; chlamydomonas flagella, tctex1 dimer,
           solution structure, contractIle protein; NMR
           {Chlamydomonas reinhardtii}
          Length = 114

 Score =  124 bits (313), Expect = 2e-38
 Identities = 56/108 (51%), Positives = 75/108 (69%)

Query: 25  TTEDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVVETIMANLIKLDKPFKYVV 84
             E++ F  D++S IIKE+I+  +    Y+ AKVS + S  +E  +  L  L+KPFKYVV
Sbjct: 7   AVEEAAFVADDVSNIIKESIDAVLQNQQYSEAKVSQWTSSCLEHCIKRLTALNKPFKYVV 66

Query: 85  NGTVMQKLGAGLHTSSSCLWDDNTDGSCTVRWENKTMYCIVSVYALAL 132
              +MQK GAGLHT++SC WD  TDGS TVRWENK+MYCI +V+ LA+
Sbjct: 67  TCIIMQKNGAGLHTAASCWWDSTTDGSRTVRWENKSMYCICTVFGLAI 114


>2auv_A Potential NAD-reducing hydrogenase subunit; thioredoxin,
          thiordoxin-like, oxidoreductase; NMR {Desulfovibrio
          fructosovorans}
          Length = 85

 Score = 27.1 bits (61), Expect = 0.83
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 22 PGGTTEDSKFAVDEISCI 39
           G  T D +F++D + C+
Sbjct: 37 IGDVTPDGRFSIDTLRCV 54


>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
           {Bacillus subtilis}
          Length = 555

 Score = 26.0 bits (58), Expect = 4.1
 Identities = 3/40 (7%), Positives = 17/40 (42%)

Query: 27  EDSKFAVDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVV 66
            +S   +++   +I   ++  +   T   +++   ++  +
Sbjct: 495 RESGDLINDAQELISNHLQKVMERKTTQWSEIKNEITDTL 534


>1rlf_A RLF, RLF-RBD; signal transduction protein; NMR {Mus musculus}
          SCOP: d.15.1.5
          Length = 90

 Score = 25.1 bits (55), Expect = 4.4
 Identities = 11/59 (18%), Positives = 23/59 (38%), Gaps = 7/59 (11%)

Query: 37 SCIIKEAIEDCIGGNTYNSAKVST--YVSQVVETIMA-NLIKLDKPFKYVVNGTVMQKL 92
            II+  +E    G+ Y S  V++      V+  ++  N        ++     ++Q L
Sbjct: 5  CRIIRVQMELGEDGSVYKSILVTSQDKAPSVISRVLKKNNRDSAVASEF----ELVQLL 59


>3my7_A Alcohol dehydrogenase/acetaldehyde dehydrogenase; ACDH, PSI, MCSG,
           structural genomics, midwest center for STR genomics;
           2.30A {Vibrio parahaemolyticus}
          Length = 452

 Score = 25.7 bits (57), Expect = 5.7
 Identities = 12/67 (17%), Positives = 28/67 (41%), Gaps = 4/67 (5%)

Query: 33  VDEISCIIKEAIEDCIGGNTYNSAKVSTYVSQVV--ETIMANLI-KLDKPFKYVVNGTVM 89
           +DE +  IK A+   +   T+++  V      V+  + +   +  +      +V++ T  
Sbjct: 221 IDE-TADIKRAVASVLMSKTFDNGVVCASEQAVIVVDEVYDEVKERFASHKAHVLSKTDA 279

Query: 90  QKLGAGL 96
            K+   L
Sbjct: 280 DKVRKVL 286


>3i9v_2 NADH-quinone oxidoreductase subunit 2; electron transport,
           respiratory chain, cell flavoprotein, FMN, iron,
           iron-sulfur, membrane; HET: FMN; 3.10A {Thermus
           thermophilus} PDB: 2ybb_2* 2fug_2* 3iam_2* 3ias_2*
           3m9s_2*
          Length = 181

 Score = 25.3 bits (56), Expect = 6.3
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 22  PGGTTEDSKFAVDEISCI 39
           PG  T D  F+V ++ C+
Sbjct: 108 PGEVTPDGLFSVQKVECL 125


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.313    0.126    0.367 

Gapped
Lambda     K      H
   0.267   0.0817    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,836,778
Number of extensions: 93455
Number of successful extensions: 173
Number of sequences better than 10.0: 1
Number of HSP's gapped: 173
Number of HSP's successfully gapped: 34
Length of query: 132
Length of database: 6,701,793
Length adjustment: 83
Effective length of query: 49
Effective length of database: 4,384,350
Effective search space: 214833150
Effective search space used: 214833150
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 52 (23.6 bits)