RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2601
         (132 letters)



>d2nnua1 b.91.1.1 (A:1-200) E2 regulatory, transactivation domain
           {Human papillomavirus type 16 [TaxId: 333760]}
          Length = 200

 Score = 25.4 bits (56), Expect = 1.9
 Identities = 4/21 (19%), Positives = 8/21 (38%)

Query: 108 TDGSCTVRWENKTMYCIVSVY 128
            +    V    + + C  SV+
Sbjct: 180 KNKVWEVHAGGQVILCPTSVF 200


>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
           subunit HisZ {Thermotoga maritima [TaxId: 2336]}
          Length = 275

 Score = 25.1 bits (54), Expect = 2.8
 Identities = 7/54 (12%), Positives = 11/54 (20%)

Query: 70  MANLIKLDKPFKYVVNGTVMQKLGAGLHTSSSCLWDDNTDGSCTVRWENKTMYC 123
                  D   K      V +  G+ L        +     S     E   +  
Sbjct: 61  HRKRYSPDSQIKVWYADFVYRYSGSDLVAEYQLGLEKVPRNSLDDSLEVLEIIV 114


>d2nn6a1 d.14.1.4 (A:1-184) Exosome complex exonuclease RRP45 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 184

 Score = 24.7 bits (53), Expect = 3.7
 Identities = 5/22 (22%), Positives = 6/22 (27%)

Query: 106 DNTDGSCTVRWENKTMYCIVSV 127
               G C V      +   VS 
Sbjct: 40  GTDYGCCIVELGKTRVLGQVSC 61


>d1udsa1 d.14.1.4 (A:2-150) Ribonuclease PH, domain 1 {Aquifex
           aeolicus [TaxId: 63363]}
          Length = 149

 Score = 24.1 bits (51), Expect = 5.3
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 107 NTDGSCTVRWENKTMYCIVSVY 128
             +GSC + +    + C  SV 
Sbjct: 22  YPEGSCLISFGKTKVICTASVI 43


>d1yqga1 a.100.1.10 (A:153-263) Pyrroline-5-carboxylate reductase
           ProC {Neisseria meningitidis, serogroup B [TaxId: 487]}
          Length = 111

 Score = 23.4 bits (50), Expect = 6.9
 Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 2/43 (4%)

Query: 8   STLSTKDVTQSTAAPGGTTEDSKFAVDE--ISCIIKEAIEDCI 48
           +    + + ++  + GGTT ++  A     ++  I E +  C+
Sbjct: 58  TGEDFEKLQKNVTSKGGTTHEAVEAFRRHRVAEAISEGVCACV 100


>d2nn6e1 d.14.1.4 (E:5-191) Exosome complex exonuclease RRP42 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 187

 Score = 23.5 bits (50), Expect = 8.6
 Identities = 6/21 (28%), Positives = 9/21 (42%)

Query: 107 NTDGSCTVRWENKTMYCIVSV 127
           NT GS  V+  +  +   V  
Sbjct: 40  NTSGSARVKLGHTDILVGVKA 60


>d1xl7a1 c.43.1.3 (A:11-392) Peroxisomal carnitine
           O-octanoyltransferase, COT {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 382

 Score = 23.8 bits (51), Expect = 8.7
 Identities = 6/17 (35%), Positives = 9/17 (52%)

Query: 110 GSCTVRWENKTMYCIVS 126
           G  +VRW +K+   I  
Sbjct: 290 GDPSVRWGDKSYNLISF 306


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.313    0.126    0.367 

Gapped
Lambda     K      H
   0.267   0.0710    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 445,776
Number of extensions: 17558
Number of successful extensions: 61
Number of sequences better than 10.0: 1
Number of HSP's gapped: 61
Number of HSP's successfully gapped: 9
Length of query: 132
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 56
Effective length of database: 1,364,116
Effective search space: 76390496
Effective search space used: 76390496
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 48 (22.3 bits)