RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2603
(178 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 103 bits (260), Expect = 2e-26
Identities = 33/63 (52%), Positives = 42/63 (66%), Gaps = 3/63 (4%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL+T LP N GL+DQ+ AL W+++NI F GDP NVTL G GAA V+ L++
Sbjct: 145 GFLSTGDSE---LPGNAGLLDQVLALRWVKDNIAAFGGDPDNVTLFGESAGAASVSLLLL 201
Query: 157 SPA 159
SPA
Sbjct: 202 SPA 204
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 81.2 bits (201), Expect = 2e-18
Identities = 31/63 (49%), Positives = 39/63 (61%), Gaps = 3/63 (4%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL+T LP NYGL DQ AL W+Q+NI F GDP +VT+ G G A V+ L++
Sbjct: 139 GFLSTGDIE---LPGNYGLKDQRLALKWVQDNIAAFGGDPDSVTIFGESAGGASVSLLLL 195
Query: 157 SPA 159
SP
Sbjct: 196 SPD 198
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 68.6 bits (168), Expect = 5e-14
Identities = 31/75 (41%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 92 FLLFPGFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACV 151
FL +T SN GL+DQI AL W+++NI F GDP NVTL G GAA +
Sbjct: 140 FLDLSSL-DTEDAFA----SNLGLLDQILALKWVRDNIEAFGGDPQNVTLFGESAGAASI 194
Query: 152 NFLMISPAVPDGLIK 166
L+ P+ GL
Sbjct: 195 LTLLAVPSAK-GLFH 208
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 36.1 bits (83), Expect = 0.005
Identities = 11/34 (32%), Positives = 15/34 (44%)
Query: 115 LMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGA 148
L D AA W++ N DPS + + G G
Sbjct: 130 LEDAYAAYRWLRANAAELGIDPSRIAVAGDSAGG 163
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 33.3 bits (77), Expect = 0.032
Identities = 11/35 (31%), Positives = 16/35 (45%)
Query: 114 GLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGA 148
+ D AAL W+ E+ DPS + + G G
Sbjct: 48 AIEDAYAALRWLAEHAWELGADPSRIAVAGDSAGG 82
>gnl|CDD|233589 TIGR01828, pyru_phos_dikin, pyruvate, phosphate dikinase. This
model represents pyruvate,phosphate dikinase, also
called pyruvate,orthophosphate dikinase. It is similar
in sequence to other PEP-utilizing enzymes [Energy
metabolism, Other].
Length = 856
Score = 30.8 bits (70), Expect = 0.38
Identities = 15/37 (40%), Positives = 20/37 (54%), Gaps = 1/37 (2%)
Query: 114 GLMDQIA-ALHWIQENIGYFNGDPSNVTLVGHGTGAA 149
GL ++I AL ++E G GD N LV +GAA
Sbjct: 59 GLQEEIKEALTLLEEKTGKKFGDTENPLLVSVRSGAA 95
>gnl|CDD|179651 PRK03806, murD, UDP-N-acetylmuramoyl-L-alanyl-D-glutamate
synthetase; Provisional.
Length = 438
Score = 29.9 bits (68), Expect = 0.75
Identities = 10/32 (31%), Positives = 15/32 (46%), Gaps = 4/32 (12%)
Query: 131 YFNGDPSNVTLVGHG-TGAACVNFLMISPAVP 161
Y V ++G G TG +CV+F + P
Sbjct: 4 YQG---KKVVIIGLGLTGLSCVDFFLARGVTP 32
>gnl|CDD|181411 PRK08393, PRK08393, N-ethylammeline chlorohydrolase; Provisional.
Length = 424
Score = 29.0 bits (65), Expect = 1.4
Identities = 13/37 (35%), Positives = 20/37 (54%), Gaps = 2/37 (5%)
Query: 93 LLFPGFLNTNTDVHMRLPSNYGLMDQIAALHWIQENI 129
++ PGF+N +T M L GL D + + W+Q I
Sbjct: 51 VVSPGFINAHTHSPMVLLR--GLADDVPLMEWLQNYI 85
>gnl|CDD|131824 TIGR02777, LigD_PE_dom, DNA ligase D, 3'-phosphoesterase domain.
Most sequences in this family are the
3'-phosphoesterase domain of a multidomain,
multifunctional DNA ligase, LigD, involved, along with
bacterial Ku protein, in non-homologous end joining,
the less common of two general mechanisms of repairing
double-stranded breaks in DNA sequences. LigD is
variable in architecture, as it lacks this domain in
Bacillus subtilis, is permuted in Mycobacterium
tuberculosis, and occasionally is encoded by tandem
ORFs rather than as a multifuntional protein. In a few
species (Dehalococcoides ethenogenes and the archaeal
genus Methanosarcina), sequences corresponding to the
ligase and polymerase domains of LigD are not found,
and the role of this protein is unclear [DNA
metabolism, DNA replication, recombination, and
repair].
Length = 156
Score = 27.3 bits (61), Expect = 2.8
Identities = 19/49 (38%), Positives = 24/49 (48%), Gaps = 10/49 (20%)
Query: 43 LLFVVSQHGHRRAHAPPFQLRANG-------PNSGPPLDPGEHRVLGVH 84
+FVV +H R H F+L +G P GP LDP + R L VH
Sbjct: 28 AIFVVQKHHASRLHYD-FRLELDGVLKSWAVPK-GPSLDPADKR-LAVH 73
>gnl|CDD|180363 PRK06038, PRK06038, N-ethylammeline chlorohydrolase; Provisional.
Length = 430
Score = 27.8 bits (62), Expect = 3.3
Identities = 11/37 (29%), Positives = 19/37 (51%), Gaps = 2/37 (5%)
Query: 93 LLFPGFLNTNTDVHMRLPSNYGLMDQIAALHWIQENI 129
++ PG +NT+T M L Y D + W+ ++I
Sbjct: 52 VVMPGLVNTHTHAAMTLFRGYA--DDLPLAEWLNDHI 86
>gnl|CDD|219075 pfam06534, RGM_C, Repulsive guidance molecule (RGM) C-terminus.
This family consists of several mammalian and one bird
sequence from Gallus gallus (Chicken). This family
represents the C-terminal region of several sequences
but in others it represents the full protein. All of the
mammalian proteins are hypothetical and have no known
function but RGMA from the chicken is annotated as being
a repulsive guidance molecule (RGM). RGM is a GPI-linked
axon guidance molecule of the retinotectal system. RGM
is repulsive for a subset of axons, those from the
temporal half of the retina. Temporal retinal axons
invade the anterior optic tectum in a superficial layer,
and encounter RGM expressed in a gradient with
increasing concentration along the anterior-posterior
axis. Temporal axons are able to receive
posterior-dependent information by sensing gradients or
concentrations of guidance cues. Thus, RGM is likely to
provide positional information for temporal axons
invading the optic tectum in the stratum opticum.
Length = 213
Score = 27.0 bits (60), Expect = 4.3
Identities = 28/117 (23%), Positives = 37/117 (31%), Gaps = 16/117 (13%)
Query: 49 QHGHRRAHAPPFQLRANGPNSGPP----LDPGE---HRVLGVH--YFNTLPYFLLFPGFL 99
H H RA R PP L+ L V YF + + LL G
Sbjct: 103 GHFHLRAALTGGSRRHGPSVPAPPGIFTLETATTKCKEKLPVEDLYFQSCVFDLLTTG-- 160
Query: 100 NTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
DV+ + Y L D + ALH +E + F N + A V
Sbjct: 161 ----DVNFTAAAYYALED-VKALHPNKERLHLFPRTTGNSAPLPRLLSALVVLLFSF 212
>gnl|CDD|181133 PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated.
Length = 286
Score = 27.3 bits (61), Expect = 4.4
Identities = 8/12 (66%), Positives = 11/12 (91%)
Query: 79 RVLGVHYFNTLP 90
RVLG+H+FN +P
Sbjct: 138 RVLGLHFFNPVP 149
>gnl|CDD|238363 cd00707, Pancreat_lipase_like, Pancreatic lipase-like enzymes.
Lipases are esterases that can hydrolyze long-chain
acyl-triglycerides into di- and monoglycerides,
glycerol, and free fatty acids at a water/lipid
interface. A typical feature of lipases is "interfacial
activation," the process of becoming active at the
lipid/water interface, although several examples of
lipases have been identified that do not undergo
interfacial activation . The active site of a lipase
contains a catalytic triad consisting of Ser - His -
Asp/Glu, but unlike most serine proteases, the active
site is buried inside the structure. A "lid" or "flap"
covers the active site, making it inaccessible to
solvent and substrates. The lid opens during the process
of interfacial activation, allowing the lipid substrate
access to the active site.
Length = 275
Score = 27.2 bits (61), Expect = 4.6
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 3/27 (11%)
Query: 122 LHWIQENIGYFNGDPSNVTLVGHGTGA 148
L ++ +N G NV L+GH GA
Sbjct: 100 LDFLVDNTGL---SLENVHLIGHSLGA 123
>gnl|CDD|117208 pfam08635, ox_reductase_C, Putative oxidoreductase C terminal.
This is the C terminal of a family of putative
oxidoreductases.
Length = 142
Score = 26.7 bits (59), Expect = 5.1
Identities = 8/14 (57%), Positives = 10/14 (71%)
Query: 3 EWKTKPGRLPKIPI 16
EW PG+L KIP+
Sbjct: 78 EWYEPPGKLSKIPV 91
>gnl|CDD|215913 pfam00425, Chorismate_bind, chorismate binding enzyme. This family
includes the catalytic regions of the chorismate binding
enzymes anthranilate synthase, isochorismate synthase,
aminodeoxychorismate synthase and para-aminobenzoate
synthase.
Length = 254
Score = 26.7 bits (60), Expect = 6.5
Identities = 12/59 (20%), Positives = 19/59 (32%), Gaps = 26/59 (44%)
Query: 103 TDVHMRLPSNYGLMDQIAALH---------------WIQEN-----------IGYFNGD 135
+ + RL L+D +AALH I E +G+ + D
Sbjct: 153 STITGRLKPGLSLLDLLAALHPTGAVTGAPKKRAMEIIAELEPFDRGLYAGAVGWLDPD 211
>gnl|CDD|215752 pfam00151, Lipase, Lipase.
Length = 329
Score = 26.6 bits (59), Expect = 7.7
Identities = 10/29 (34%), Positives = 14/29 (48%), Gaps = 3/29 (10%)
Query: 120 AALHWIQENIGYFNGDPSNVTLVGHGTGA 148
L ++E + P NV L+GH GA
Sbjct: 134 KLLVELEEELNV---SPENVHLIGHSLGA 159
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.140 0.454
Gapped
Lambda K H
0.267 0.0641 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,333,344
Number of extensions: 842572
Number of successful extensions: 603
Number of sequences better than 10.0: 1
Number of HSP's gapped: 603
Number of HSP's successfully gapped: 21
Length of query: 178
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 87
Effective length of database: 6,901,388
Effective search space: 600420756
Effective search space used: 600420756
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.5 bits)