RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2603
(178 letters)
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 105 bits (265), Expect = 3e-27
Identities = 26/62 (41%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL + P N GL+DQ AL W+ +NI +F GDP VT+ G G A V ++
Sbjct: 154 GFLALHGSQE--APGNVGLLDQRMALQWVHDNIQFFGGDPKTVTIFGESAGGASVGMHIL 211
Query: 157 SP 158
SP
Sbjct: 212 SP 213
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 105 bits (264), Expect = 4e-27
Identities = 35/80 (43%), Positives = 44/80 (55%), Gaps = 3/80 (3%)
Query: 88 TLPYFLLFPGFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTG 147
T+ Y L GFL+T NYGL+D I AL W ENIG+F GDP +T+ G G G
Sbjct: 165 TVNYRLGVLGFLSTGDQA---AKGNYGLLDLIQALRWTSENIGFFGGDPLRITVFGSGAG 221
Query: 148 AACVNFLMISPAVPDGLIKG 167
+CVN L +S GL +
Sbjct: 222 GSCVNLLTLSHYSEKGLFQR 241
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 105 bits (263), Expect = 6e-27
Identities = 28/62 (45%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL+T LP NYGL DQ A+ W++ NI F GDP +TL G G A V+ +
Sbjct: 149 GFLSTGDSN---LPGNYGLWDQHMAIAWVKRNIEAFGGDPDQITLFGESAGGASVSLQTL 205
Query: 157 SP 158
SP
Sbjct: 206 SP 207
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 103 bits (258), Expect = 2e-26
Identities = 29/62 (46%), Positives = 34/62 (54%), Gaps = 2/62 (3%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL P N GL+DQ AL W+QENI F GDP +VTL G GAA V ++
Sbjct: 157 GFLALPGSRE--APGNVGLLDQRLALQWVQENIAAFGGDPMSVTLFGESAGAASVGMHIL 214
Query: 157 SP 158
S
Sbjct: 215 SL 216
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 102 bits (257), Expect = 3e-26
Identities = 25/62 (40%), Positives = 38/62 (61%), Gaps = 3/62 (4%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GF +T + N+G +DQ+AAL W+Q+NI F G+P +VT+ G G V+ L++
Sbjct: 158 GFFSTGDEH---SRGNWGHLDQVAALRWVQDNIASFGGNPGSVTIFGESAGGESVSVLVL 214
Query: 157 SP 158
SP
Sbjct: 215 SP 216
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 102 bits (256), Expect = 4e-26
Identities = 22/68 (32%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Query: 92 FLLFPGFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACV 151
FL + + P N GL DQ A+ W+++N F G+P +TL G G++ V
Sbjct: 187 FLHLAPEMPSEFAEEA--PGNVGLWDQALAIRWLKDNAHAFGGNPEWMTLFGESAGSSSV 244
Query: 152 NFLMISPA 159
N ++SP
Sbjct: 245 NAQLMSPV 252
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 102 bits (256), Expect = 5e-26
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL + P N GL DQ AL W+Q+NI F G+P +VTL G GAA V+ ++
Sbjct: 152 GFLALPGNPE--APGNMGLFDQQLALQWVQKNIAAFGGNPKSVTLFGESAGAASVSLHLL 209
Query: 157 SP 158
SP
Sbjct: 210 SP 211
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 99.7 bits (249), Expect = 4e-25
Identities = 25/62 (40%), Positives = 35/62 (56%), Gaps = 3/62 (4%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL+ N+ +P N GL D + L W+Q N +F G P +VTL+G GAA + L +
Sbjct: 159 GFLSLNSTS---VPGNAGLRDMVTLLKWVQRNAHFFGGRPDDVTLMGQSAGAAATHILSL 215
Query: 157 SP 158
S
Sbjct: 216 SK 217
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 90.4 bits (225), Expect = 7e-22
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 97 GFLNT--NTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFL 154
GFL+ + N G++DQ+AAL W++ENI F GDP N+T+ G GAA V L
Sbjct: 144 GFLHLGDSFGEAYAQAGNLGILDQVAALRWVKENIAAFGGDPDNITIFGESAGAASVGVL 203
Query: 155 MISPA 159
+ P
Sbjct: 204 LSLPE 208
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 88.5 bits (220), Expect = 4e-21
Identities = 28/64 (43%), Positives = 37/64 (57%), Gaps = 3/64 (4%)
Query: 97 GFLNTNT-DVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLM 155
GFL+ ++ D N GL+DQ AAL W++ENI F GDP NVT+ G G + L+
Sbjct: 142 GFLHLSSFDEAY--SDNLGLLDQAAALKWVRENISAFGGDPDNVTVFGESAGGMSIAALL 199
Query: 156 ISPA 159
PA
Sbjct: 200 AMPA 203
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 87.5 bits (217), Expect = 8e-21
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL + + +N GL DQ L W+ +NI F GDP V + G GA V +I
Sbjct: 170 GFLGGD-AITAEGNTNAGLHDQRKGLEWVSDNIANFGGDPDKVMIFGESAGAMSVAHQLI 228
Query: 157 SP 158
+
Sbjct: 229 AY 230
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 87.0 bits (216), Expect = 1e-20
Identities = 23/69 (33%), Positives = 35/69 (50%), Gaps = 2/69 (2%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL + V N GL+DQ AL W+++ I F GDP ++ + G GA V + +
Sbjct: 147 GFLASE-KVRQNGDLNAGLLDQRKALRWVKQYIEQFGGDPDHIVIHGVSAGAGSVAYHLS 205
Query: 157 SP-AVPDGL 164
+ +GL
Sbjct: 206 AYGGKDEGL 214
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 82.5 bits (204), Expect = 4e-19
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 97 GFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMI 156
GFL + D+ N GL DQ + W+ +NI F GDPS VT+ G G+ V +I
Sbjct: 162 GFLAGD-DIKAEGSGNAGLKDQRLGMQWVADNIAGFGGDPSKVTIFGESAGSMSVLCHLI 220
Query: 157 SP 158
Sbjct: 221 WN 222
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 34.5 bits (79), Expect = 0.012
Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 7/58 (12%)
Query: 116 MDQIA-ALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMISPAV----PDGLIKGI 168
M Q L+WI + S++T GH GA + +++ P V ++ +
Sbjct: 132 MTQFTHFLNWIFDYTEM--TKVSSLTFAGHXAGAHLLAQILMRPNVITAQRSKMVWAL 187
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 34.6 bits (79), Expect = 0.015
Identities = 34/227 (14%), Positives = 59/227 (25%), Gaps = 89/227 (39%)
Query: 18 YPFEYGSKESSTQNERTNQNARTPCLLFV-------VSQH-GHRRAHAPPFQ-----LRA 64
YP + N+ +P +L + V + +H P + L
Sbjct: 314 YPNTSLPPSILEDSLENNEGVPSP-MLSISNLTQEQVQDYVNKTNSHLPAGKQVEISLV- 371
Query: 65 NGPN----SGPPLD----------------------PGEHR-VLGVHYFN--TLPYF--- 92
NG SGPP P R + + F P+
Sbjct: 372 NGAKNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRFLPVASPFHSHL 431
Query: 93 -----------------------LLFPGFLNTNTDVHMR-----LPSNYGLMDQIA--AL 122
+ P + +T +R + ++D I +
Sbjct: 432 LVPASDLINKDLVKNNVSFNAKDIQIPVY-DTFDGSDLRVLSGSISER--IVDCIIRLPV 488
Query: 123 HWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMISPAVPDGLIKGIR 169
W +++ G G GA+ + L DG G+R
Sbjct: 489 KWETTT----QFKATHILDFGPG-GASGLGVLTH--RNKDG--TGVR 526
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 31.9 bits (73), Expect = 0.082
Identities = 3/38 (7%), Positives = 12/38 (31%), Gaps = 3/38 (7%)
Query: 117 DQIAALHWIQENIGYFNGDPSNVTLVGH---GTGAACV 151
+ +A + ++ ++ + + G A
Sbjct: 140 ETVAVCSYFSQHADEYSLNVEKIGFAGDSAGAMLALAS 177
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure initiative,
PS hydrolase; HET: MSE; 1.85A {Saccharomyces cerevisiae}
SCOP: c.69.1.32
Length = 273
Score = 31.9 bits (72), Expect = 0.083
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 5/34 (14%)
Query: 115 LMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGA 148
L D ++ + + + +N+ +VGH GA
Sbjct: 97 LYDAVSNITRLVKE-----KGLTNINMVGHSVGA 125
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 31.8 bits (73), Expect = 0.089
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 3/38 (7%)
Query: 117 DQIAALHWIQENIGYFNGDPSNVTLVGH---GTGAACV 151
D AL WI E F+ DP+ + + G G AA
Sbjct: 127 DAYDALQWIAERAADFHLDPARIAVGGDSAGGNLAAVT 164
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 31.5 bits (72), Expect = 0.10
Identities = 13/38 (34%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 117 DQIAALHWIQENIGYFNGDPSNVTLVGH---GTGAACV 151
D A W+ EN DPS + + G G AA V
Sbjct: 132 DCYDATKWVAENAEELRIDPSKIFVGGDSAGGNLAAAV 169
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 31.1 bits (71), Expect = 0.17
Identities = 9/38 (23%), Positives = 13/38 (34%), Gaps = 3/38 (7%)
Query: 117 DQIAALHWIQENIGYFNGDPSNVTLVGH---GTGAACV 151
D A W+ +N D + + G G AA
Sbjct: 129 DAYDAAKWVADNYDKLGVDNGKIAVAGDSAGGNLAAVT 166
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 31.1 bits (71), Expect = 0.18
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 117 DQIAALHWIQENIGYFNGDPSNVTLVGH---GTGAACV 151
D AAL W+ + DP + + G G AA V
Sbjct: 126 DAYAALKWVADRADELGVDPDRIAVAGDSAGGNLAAVV 163
>3p4h_A ATP-dependent DNA ligase, N-terminal domain prote;
phosphoesterase, metalloenzyme, manganese, beta barrel,
PHOS hydrolase; HET: PEG; 1.10A {Candidatus korarchaeum
cryptofilum} PDB: 3ta5_A 3ta7_A*
Length = 118
Score = 29.8 bits (67), Expect = 0.21
Identities = 12/42 (28%), Positives = 16/42 (38%), Gaps = 7/42 (16%)
Query: 45 FVVSQHGHRRAHAPPFQLRANGPNS------GPPLDPGEHRV 80
FVV +H RR H +L + G P G R+
Sbjct: 5 FVVQEHHARRLHW-DLRLEMDNVLKSWALPKGVPEKRGVKRL 45
>2q0x_A Protein DUF1749, uncharacterized protein; alpha/beta hydrolase
fold, structural genomics, structural G of pathogenic
protozoa consortium; 2.20A {Trypanosoma brucei}
Length = 335
Score = 30.1 bits (67), Expect = 0.34
Identities = 22/135 (16%), Positives = 39/135 (28%), Gaps = 27/135 (20%)
Query: 50 HGHRRAHAPPFQLRANGPNSGPPLDPGEHRVLGVH----YFNTLPYFLLFPGFLNTN-TD 104
H P ++ N VL V + YF L +
Sbjct: 16 HLFTYYKDPYCKIPVFMMNMDAR-----RCVLWVGGQTESLLSFDYFTNLAEELQGDWAF 70
Query: 105 VHMRLPSNY---GL------MDQIAAL--HWIQENIGYFNGDPSNVTLVGHGTGAACVNF 153
V + +PS G + + L ++++ + V L TG V
Sbjct: 71 VQVEVPSGKIGSGPQDHAHDAEDVDDLIGILLRDH------CMNEVALFATSTGTQLVFE 124
Query: 154 LMISPAVPDGLIKGI 168
L+ + A + + I
Sbjct: 125 LLENSAHKSSITRVI 139
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 29.1 bits (65), Expect = 0.81
Identities = 10/48 (20%), Positives = 14/48 (29%)
Query: 115 LMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMISPAVPD 162
L A + WI + D + L G G V P+
Sbjct: 87 LQQLGATIDWITTQASAHHVDCQRIILAGFSAGGHVVATYNGVATQPE 134
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 28.8 bits (65), Expect = 0.81
Identities = 12/38 (31%), Positives = 16/38 (42%), Gaps = 3/38 (7%)
Query: 117 DQIAALHWIQENIGYFNGDPSNVTLVGH---GTGAACV 151
D AAL +I + DPS + + G G AA
Sbjct: 132 DCYAALLYIHAHAEELGIDPSRIAVGGQSAGGGLAAGT 169
>3n9b_A Probable ATP-dependent DNA ligase; phosphoesterase,
metalloenzyme, NHEJ, manganese, BET; 1.92A {Pseudomonas
aeruginosa} PDB: 3n9d_A 2lj6_A
Length = 171
Score = 28.4 bits (63), Expect = 0.92
Identities = 16/53 (30%), Positives = 21/53 (39%), Gaps = 7/53 (13%)
Query: 33 RTNQNARTPCLLFVVSQHGHRRAHAPPFQLRANGPNS------GPPLDPGEHR 79
R + T L + V +H R H F+L +G GP LDP R
Sbjct: 9 RKPRKDSTGLLRYCVQKHDASRLHY-DFRLELDGTLKSWAVPKGPCLDPAVKR 60
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 28.6 bits (64), Expect = 0.97
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 10/68 (14%)
Query: 108 RLPSNYG--------LMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMISPA 159
+ + L + A I +N + +P V L+G G + S
Sbjct: 82 TVMNKGTNYNFLSQNLEEVQAVFSLIHQNHKEWQINPEQVFLLGCSAGGHLAAWYGNSEQ 141
Query: 160 V--PDGLI 165
+ P G+I
Sbjct: 142 IHRPKGVI 149
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 28.4 bits (64), Expect = 1.1
Identities = 10/38 (26%), Positives = 14/38 (36%), Gaps = 3/38 (7%)
Query: 117 DQIAALHWIQENIGYFNGDPSNVTLVGH---GTGAACV 151
D I L W+ N D + + G T AA +
Sbjct: 138 DAIEVLTWVVGNATRLGFDARRLAVAGSSAGATLAAGL 175
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 28.3 bits (63), Expect = 1.5
Identities = 8/47 (17%), Positives = 21/47 (44%), Gaps = 6/47 (12%)
Query: 108 RLPSNYG------LMDQIAALHWIQENIGYFNGDPSNVTLVGHGTGA 148
L ++ ++D A++ ++++ ++ DP +T G G
Sbjct: 89 TLLTDQQPLGLAPVLDLGRAVNLLRQHAAEWHIDPQQITPAGFSVGG 135
>3p43_A Putative uncharacterized protein; phosphoesterase, metalloenzyme,
hydrolase, manganese, beta B; 2.10A {Methanosarcina
barkeri str}
Length = 152
Score = 27.6 bits (61), Expect = 1.5
Identities = 14/48 (29%), Positives = 20/48 (41%), Gaps = 7/48 (14%)
Query: 38 ARTPCLLFVVSQHGHRRAHAPPFQLRANGPNS------GPPLDPGEHR 79
+ +FVV +H R+ H F+L +G PP D G R
Sbjct: 25 KSSDKPIFVVQRHDARKLHY-DFRLEMDGVLKSWAVPKEPPKDAGTRR 71
>2gzs_A IROE protein; enterobactin, salmochelin, DFP, hydrolase, catalytic
DYAD; HET: DFP; 1.40A {Escherichia coli} SCOP: c.69.1.38
PDB: 2gzr_A*
Length = 278
Score = 26.9 bits (59), Expect = 3.5
Identities = 8/44 (18%), Positives = 13/44 (29%), Gaps = 3/44 (6%)
Query: 122 LHWIQENIGYFNGDPSNVTLVGHGTGAACVNFLMISPAVPDGLI 165
+++ N D L GH G V +S +
Sbjct: 129 APKVEQG---LNIDRQRRGLWGHSYGGLFVLDSWLSSSYFRSYY 169
>3ls9_A Triazine hydrolase; atrazine chlorohydrolase TRZN; 1.40A
{Arthrobacter aurescens} PDB: 3lsc_A* 3lsb_A*
Length = 456
Score = 26.8 bits (60), Expect = 5.1
Identities = 6/63 (9%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 93 LLFPGFLNTNTDVHMRLPSNYGLMDQIAALHWIQENIGYFNGDPSNVTL----VGHGTGA 148
+ PG +N++ ++ ++++ W++ + G + + A
Sbjct: 54 IALPGLINSHQHLYEGAMRAIPQLERVTMASWLEGVLTRSAGWWRDGKFGPDVIREVARA 113
Query: 149 ACV 151
+
Sbjct: 114 VLL 116
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 26.4 bits (58), Expect = 8.0
Identities = 14/54 (25%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 125 IQENIGYFNGDPSNV-------TLVGHGTGAACVNFLMISP-AVPDGLIKGIRN 170
I E + + N L GH GAA + + + G+I G RN
Sbjct: 1358 INEMMKHLGRSEGNPVIGVFQKFLTGHPKGAAGAWMMNGALQILNSGIIPGNRN 1411
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 26.4 bits (57), Expect = 8.1
Identities = 10/54 (18%), Positives = 17/54 (31%), Gaps = 14/54 (25%)
Query: 92 FLLFPGFLNTNTDVHMR-----LPSNYGLMDQIAALHWIQENIGYFNGDPSNVT 140
LF L+ ++ + L NY ++ I PS +T
Sbjct: 65 LRLFWTLLSKQEEMVQKFVEEVLRINYK---------FLMSPIKTEQRQPSMMT 109
>1dug_A Chimera of glutathione S-transferase-synthetic linker-C-terminal
fibrinogen gamma...; gamma chain integrin fragment; HET:
GSH; 1.80A {Schistosoma japonicum} SCOP: a.45.1.1
c.47.1.5 PDB: 1gne_A* 3qmz_T 1y6e_A 1m9a_A* 1gtb_A*
1gta_A* 1m99_A* 1m9b_A* 1ua5_A* 1u87_A* 1u88_A* 3crt_A*
3cru_A* 3d0z_A*
Length = 234
Score = 25.9 bits (57), Expect = 8.2
Identities = 9/34 (26%), Positives = 13/34 (38%), Gaps = 3/34 (8%)
Query: 53 RRAHAPPF---QLRANGPNSGPPLDPGEHRVLGV 83
+ A P Q G + P DP +H + G
Sbjct: 195 SKYIAWPLQGWQATFGGGDHPPKSDPQQHHLGGA 228
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 25.3 bits (54), Expect = 9.1
Identities = 4/13 (30%), Positives = 6/13 (46%)
Query: 61 QLRANGPNSGPPL 73
L+ +S P L
Sbjct: 28 SLKLYADDSAPAL 40
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.320 0.140 0.454
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,829,317
Number of extensions: 157982
Number of successful extensions: 397
Number of sequences better than 10.0: 1
Number of HSP's gapped: 393
Number of HSP's successfully gapped: 44
Length of query: 178
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 91
Effective length of database: 4,272,666
Effective search space: 388812606
Effective search space used: 388812606
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (24.9 bits)