Query psy2604
Match_columns 189
No_of_seqs 174 out of 1912
Neff 9.2
Searched_HMMs 46136
Date Fri Aug 16 20:26:40 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0158|consensus 100.0 6.2E-50 1.3E-54 334.2 19.0 182 1-186 314-499 (499)
2 KOG0156|consensus 100.0 8.9E-48 1.9E-52 323.6 17.6 180 1-185 306-487 (489)
3 KOG0159|consensus 100.0 1.4E-46 3.1E-51 309.8 15.6 184 1-187 336-519 (519)
4 KOG0157|consensus 100.0 4.8E-46 1E-50 315.9 18.2 183 1-186 311-496 (497)
5 PLN02169 fatty acid (omega-1)- 100.0 5E-46 1.1E-50 316.3 17.6 175 1-185 321-499 (500)
6 PLN02738 carotene beta-ring hy 100.0 1.3E-45 2.8E-50 320.3 19.5 184 1-188 411-597 (633)
7 PLN02971 tryptophan N-hydroxyl 100.0 9E-46 2E-50 317.5 18.0 180 1-185 347-533 (543)
8 PLN02500 cytochrome P450 90B1 100.0 1.2E-45 2.7E-50 313.2 18.4 180 1-184 299-488 (490)
9 PLN02394 trans-cinnamate 4-mon 100.0 1.1E-45 2.5E-50 314.2 18.0 182 1-186 313-502 (503)
10 PLN00168 Cytochrome P450; Prov 100.0 1.7E-45 3.6E-50 314.4 18.2 184 1-186 326-517 (519)
11 PLN02290 cytokinin trans-hydro 100.0 1.7E-45 3.7E-50 314.0 17.7 179 1-186 336-515 (516)
12 PTZ00404 cytochrome P450; Prov 100.0 1.2E-45 2.7E-50 312.5 16.7 177 1-185 303-482 (482)
13 PLN02426 cytochrome P450, fami 100.0 2.8E-45 6.1E-50 311.7 18.7 184 1-186 313-500 (502)
14 PLN02183 ferulate 5-hydroxylas 100.0 2.2E-45 4.9E-50 313.4 17.8 182 1-185 324-511 (516)
15 PLN03195 fatty acid omega-hydr 100.0 1.8E-45 3.9E-50 313.9 16.9 184 1-186 312-516 (516)
16 PLN02655 ent-kaurene oxidase 100.0 4.3E-45 9.4E-50 308.2 18.6 183 1-187 282-465 (466)
17 PF00067 p450: Cytochrome P450 100.0 1E-45 2.2E-50 306.8 14.5 178 1-182 282-463 (463)
18 PLN03234 cytochrome P450 83B1; 100.0 5.1E-45 1.1E-49 309.9 17.4 182 1-185 308-498 (499)
19 PLN00110 flavonoid 3',5'-hydro 100.0 7.7E-45 1.7E-49 309.3 17.2 183 1-186 309-497 (504)
20 PLN02774 brassinosteroid-6-oxi 100.0 1.3E-44 2.7E-49 305.1 17.3 178 1-184 284-462 (463)
21 PLN03141 3-epi-6-deoxocathaste 100.0 1.9E-44 4.2E-49 303.1 18.1 179 1-187 271-451 (452)
22 PLN03018 homomethionine N-hydr 100.0 5.2E-44 1.1E-48 305.8 19.0 182 1-186 334-524 (534)
23 PLN02966 cytochrome P450 83A1 100.0 6.8E-44 1.5E-48 303.3 18.5 159 1-159 309-470 (502)
24 PLN02687 flavonoid 3'-monooxyg 100.0 7.9E-44 1.7E-48 303.9 18.1 183 1-186 317-509 (517)
25 PLN03112 cytochrome P450 famil 100.0 6.7E-44 1.5E-48 304.1 17.6 183 1-186 316-508 (514)
26 PLN02936 epsilon-ring hydroxyl 100.0 5.2E-43 1.1E-47 297.1 18.8 182 1-187 298-483 (489)
27 PLN02987 Cytochrome P450, fami 100.0 7E-43 1.5E-47 295.0 18.7 184 1-188 287-471 (472)
28 PLN02302 ent-kaurenoic acid ox 100.0 6.6E-43 1.4E-47 296.1 17.9 181 1-187 307-489 (490)
29 PLN02196 abscisic acid 8'-hydr 100.0 6.1E-43 1.3E-47 294.9 16.9 178 1-185 284-462 (463)
30 KOG0684|consensus 100.0 6.1E-43 1.3E-47 283.2 14.7 183 1-186 293-485 (486)
31 PLN02648 allene oxide synthase 100.0 1.8E-37 4E-42 261.9 16.5 159 1-162 292-465 (480)
32 COG2124 CypX Cytochrome P450 [ 100.0 3.1E-35 6.7E-40 244.6 12.1 155 1-185 256-410 (411)
33 PF12508 DUF3714: Protein of u 73.8 1.6 3.5E-05 33.1 1.0 44 41-85 51-94 (200)
34 PF05952 ComX: Bacillus compet 51.0 17 0.00037 21.6 2.3 19 3-21 4-22 (57)
35 TIGR03779 Bac_Flav_CT_M Bacter 50.1 7.9 0.00017 32.6 1.0 21 65-85 277-297 (410)
36 PRK06789 flagellar motor switc 47.0 29 0.00062 21.8 2.9 39 48-86 21-62 (74)
37 PF08492 SRP72: SRP72 RNA-bind 43.2 18 0.0004 21.6 1.6 7 104-110 44-50 (59)
38 PF09201 SRX: SRX; InterPro: 41.2 26 0.00056 24.9 2.3 22 130-151 19-40 (148)
39 PF11138 DUF2911: Protein of u 40.3 68 0.0015 23.0 4.4 34 66-99 52-92 (145)
40 PF07849 DUF1641: Protein of u 37.3 44 0.00095 18.4 2.4 18 2-19 13-30 (42)
41 KOG3506|consensus 37.0 17 0.00036 21.4 0.7 11 122-132 12-22 (56)
42 PF12444 Sox_N: Sox developmen 32.7 33 0.00072 22.2 1.6 21 139-159 60-80 (84)
43 PF14824 Sirohm_synth_M: Siroh 31.6 69 0.0015 16.4 2.4 16 11-26 15-30 (30)
44 KOG3302|consensus 30.6 44 0.00096 25.2 2.2 55 101-155 50-116 (200)
45 PF08285 DPM3: Dolichol-phosph 28.7 50 0.0011 21.6 2.0 25 2-26 57-81 (91)
46 COG2101 SPT15 TATA-box binding 28.2 20 0.00043 26.6 0.0 35 101-135 35-70 (185)
47 PF11227 DUF3025: Protein of u 25.9 43 0.00093 25.6 1.5 24 84-107 187-211 (212)
48 PF09551 Spore_II_R: Stage II 24.7 1.9E+02 0.0042 20.3 4.4 72 11-82 18-98 (130)
49 PRK05933 type III secretion sy 22.7 1.1E+02 0.0023 25.2 3.2 42 45-86 317-362 (372)
50 PF02663 FmdE: FmdE, Molybdenu 22.5 86 0.0019 21.7 2.4 23 128-150 4-26 (131)
51 PF14550 Peptidase_U35_2: Puta 21.6 73 0.0016 22.1 1.9 21 65-85 72-92 (122)
No 1
>KOG0158|consensus
Probab=100.00 E-value=6.2e-50 Score=334.19 Aligned_cols=182 Identities=38% Similarity=0.721 Sum_probs=167.4
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeC-CEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLG-EYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~-g~~ip~ 79 (189)
|++++|+||+||++|+|||+||++++. +.++ +|++.+.+|+||++||+||||+||+++.+.|.+++|+++. ++.|++
T Consensus 314 lsf~lYeLA~~PdvQ~kLreEI~~~~~-~~~~-ltyd~l~~L~YLd~Vi~ETLR~yP~~~~~~R~C~k~~~i~~~~~i~k 391 (499)
T KOG0158|consen 314 LSFALYELAKNPDVQDKLREEIDEVLE-EKEG-LTYDSLSKLKYLDMVIKETLRLYPPAPFLNRECTKDYEIPGGFVIPK 391 (499)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHHHhc-ccCC-CCHHHHhCCcHHHHHHHHHHhhCCCcccccceecCceecCCCeEeCC
Confidence 578999999999999999999999977 3323 9999999999999999999999999999999999999999 999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecCC
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSS 159 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 159 (189)
|+.|.++.+++||||++|+||++|+||||.+++....++..|+|||.|+|.|+|++||.+|+|+.|++||++|+++....
T Consensus 392 G~~V~Ip~~alH~Dp~~~p~Pe~F~PERF~~~~~~~~~~~~ylPFG~GPR~CIGmRfa~mq~K~~L~~lL~~f~~~~~~~ 471 (499)
T KOG0158|consen 392 GTPVMIPTYALHHDPEYWPEPEKFKPERFEEENNKSRHPGAYLPFGVGPRNCIGMRFALMEAKLALAHLLRNFSFEVCPT 471 (499)
T ss_pred CCEEEeecccccCCcccCCCcccCCCccCCCCcccccCCccccCCCCCccccHHHHHHHHHHHHHHHHHHhhCEEecCCc
Confidence 99999999999999999999999999999988776778899999999999999999999999999999999999998873
Q ss_pred CCCceecc---eEEEeecCCeeEEEEEEcc
Q psy2604 160 PDQVKCIP---YVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 160 ~~~~~~~~---~~~~~p~~~~~~v~~~~R~ 186 (189)
.... ... +.++.|+++ +++++++|.
T Consensus 472 t~~~-~~~~~~~~~l~pk~g-i~Lkl~~r~ 499 (499)
T KOG0158|consen 472 TIIP-LEGDPKGFTLSPKGG-IWLKLEPRD 499 (499)
T ss_pred ccCc-ccCCccceeeecCCc-eEEEEEeCC
Confidence 2222 333 788999999 999999984
No 2
>KOG0156|consensus
Probab=100.00 E-value=8.9e-48 Score=323.59 Aligned_cols=180 Identities=30% Similarity=0.529 Sum_probs=160.2
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~ 79 (189)
|.|++.+|++||++|+|+++||++++| .+ +.++.+|+.++|||+|+|+|++|++|++|. ++|.+++|+.|+||.||+
T Consensus 306 l~Wa~a~Ll~~Pev~~K~qeEId~vvG-~~-r~v~e~D~~~lpYL~Avi~E~~Rl~p~~Pl~~ph~~~~d~~i~Gy~IPk 383 (489)
T KOG0156|consen 306 LEWAMAELLNNPEVQKKLQEEIDEVVG-KG-RLVSESDLPKLPYLKAVIKETLRLHPPLPLLLPRETTEDTKIGGYDIPK 383 (489)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhC-CC-CCCChhhhccCHHHHHHHHHHHhcCCCccccccccccCCeeEcCEEcCC
Confidence 479999999999999999999999999 44 449999999999999999999999999997 699999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCC-CCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecC
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKEN-SAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVS 158 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~-~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~ 158 (189)
||.|+++.|++|+||++|+||++|+||||++++ ... ....++|||.|+|+|||..+|.+++.++++.|+++|+|+..+
T Consensus 384 gT~v~vn~~ai~rDp~vw~dP~eF~PERFl~~~d~~~-~~~~~iPFG~GRR~CpG~~La~~~l~l~la~llq~F~w~~~~ 462 (489)
T KOG0156|consen 384 GTTVLVNLWAIHRDPKVWEDPEEFKPERFLDSNDGKG-LDFKLIPFGSGRRICPGEGLARAELFLFLANLLQRFDWKLPG 462 (489)
T ss_pred CCEEEEeehhhhcCCccCCCccccChhhhcCCccccC-CceEecCCCCCcCCCCcHHHHHHHHHHHHHHHHheeeeecCC
Confidence 999999999999999999999999999999984 555 678999999999999999999999999999999999999997
Q ss_pred CCCCceecceEEEeecCCeeEEEEEEc
Q psy2604 159 SPDQVKCIPYVVLRPLNSELMVRITPR 185 (189)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~v~~~~R 185 (189)
+..+.... +.++..+.+ +.+...+|
T Consensus 463 ~~~d~~e~-~~~~~~~~p-l~~~~~~r 487 (489)
T KOG0156|consen 463 GKVDMEEA-GLTLKKKKP-LKAVPVPR 487 (489)
T ss_pred CCCCCccc-ccceecCCc-ceeeeecC
Confidence 73244444 344555546 66666655
No 3
>KOG0159|consensus
Probab=100.00 E-value=1.4e-46 Score=309.83 Aligned_cols=184 Identities=35% Similarity=0.643 Sum_probs=172.3
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQ 80 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g 80 (189)
+.|++|+|++||++|++|++|+.+++. ..+..++.+++.++|||+||||||+|+||.+++..|+..+|.+++||.||||
T Consensus 336 l~~~Ly~LarnP~~Q~~L~~Ei~~~~p-~~~~~~~~~~l~~~pyLrAcIKEtlRlyPv~~~~~R~l~~D~vL~gY~vPag 414 (519)
T KOG0159|consen 336 LLWALYELARNPEVQQRLREEILAVLP-SGNSELTQKALTNMPYLRACIKETLRLYPVVPGNGRVLPKDLVLSGYHVPAG 414 (519)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhhCC-CcccccchHHHhhCHHHHHHHHhhhceeccccccccccchhceeccceecCC
Confidence 479999999999999999999999998 4347889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecCCC
Q psy2604 81 SNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSP 160 (189)
Q Consensus 81 ~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~ 160 (189)
|.|.+..+.+.+||++|++|++|+|+||++++....+.+.++|||.|+|+|+|+++|.+|+.++|+.++++|+++....
T Consensus 415 T~V~l~~~~~~r~~~~F~~p~~F~PeRWL~~~~~~~~pF~~LPFGfG~R~C~GRRiAElEl~llLarllr~f~V~~~~~- 493 (519)
T KOG0159|consen 415 TLVVLFLYVLGRNPAYFPDPEEFLPERWLKPSTKTIHPFASLPFGFGPRMCLGRRIAELELHLLLARLLRNFKVEFLHE- 493 (519)
T ss_pred CeEEEeehhhccChhhCCCccccChhhhcccccCCCCCceecCCCCCccccchHHHHHHHHHHHHHHHHHhcceeecCC-
Confidence 9999999999999999999999999999998866678899999999999999999999999999999999999999876
Q ss_pred CCceecceEEEeecCCeeEEEEEEccC
Q psy2604 161 DQVKCIPYVVLRPLNSELMVRITPRRN 187 (189)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~v~~~~R~~ 187 (189)
.++.....+++.|..+ +.++|++|.+
T Consensus 494 ~pv~~~~~~il~P~~~-l~f~f~~r~~ 519 (519)
T KOG0159|consen 494 EPVEYVYRFILVPNRP-LRFKFRPRNE 519 (519)
T ss_pred CCccceeEEEEcCCCC-cceeeeeCCC
Confidence 5677788899999988 9999998863
No 4
>KOG0157|consensus
Probab=100.00 E-value=4.8e-46 Score=315.85 Aligned_cols=183 Identities=48% Similarity=0.852 Sum_probs=163.4
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEe-CCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVL-GEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i-~g~~ip~ 79 (189)
++|+++.|+.||++|+|+++|+.++++.+. ........++|+|+++||+|||||||++|...|.+.+|+++ +||.||+
T Consensus 311 ltw~l~~La~hP~vq~k~~eEi~~i~~~~~-~~~~~~~~~~m~yl~~vi~EsLRLyppvp~~~R~~~~d~~l~~g~~IPk 389 (497)
T KOG0157|consen 311 LTWTLWLLAKHPEVQEKLREEVDEILGNRD-DKWEVEKLDQMKYLEMVIKESLRLYPPVPLVARKATKDVKLPGGYTIPK 389 (497)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhCCCC-CCCChhhhhhhHHHHHHHHHHhccCCCCchhhcccCCCeEcCCCcEeCC
Confidence 589999999999999999999999998332 32333333379999999999999999999999999999999 5899999
Q ss_pred CCEEEEeeeccccCCCCCC-CCCCcCCCCCCCCCCC-CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEec
Q psy2604 80 QSNIGIMSYLMHRSPELYP-DPEKFDPERFSKENSA-GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAV 157 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~-~p~~f~p~R~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~ 157 (189)
|+.|.++.+++|||+.+|+ ||++|||+||+++... ..++++|+|||+|+|.|+|++||++|+++++++++++|+|++.
T Consensus 390 G~~V~i~~~~~~r~~~~~~~dp~~F~PeRf~~~~~~~~~~~~~fipFsaGpR~CiG~~fA~lemKv~l~~ll~~f~~~~~ 469 (497)
T KOG0157|consen 390 GTNVLISIYALHRDPRVWGEDPEEFDPERFLDGEEKAKRHPFAFIPFSAGPRNCIGQKFAMLEMKVVLAHLLRRFRIEPV 469 (497)
T ss_pred CCEEEEehHHhccCccccCCChhhcCccccCCCCCcCCCCCccccCCCCCcccchhHHHHHHHHHHHHHHHHHheEEEec
Confidence 9999999999999999996 9999999999975433 4567899999999999999999999999999999999999988
Q ss_pred CCCCCceecceEEEeecCCeeEEEEEEcc
Q psy2604 158 SSPDQVKCIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
.+.. .......++.|+++ +.|++++|.
T Consensus 470 ~~~~-~~~~~~~~l~~~~g-l~v~~~~r~ 496 (497)
T KOG0157|consen 470 GGDK-PKPVPELTLRPKNG-LKVKLRPRG 496 (497)
T ss_pred CCCC-ceeeeEEEEEecCC-eEEEEEeCC
Confidence 7644 66677889999999 999999986
No 5
>PLN02169 fatty acid (omega-1)-hydroxylase/midchain alkane hydroxylase
Probab=100.00 E-value=5e-46 Score=316.25 Aligned_cols=175 Identities=27% Similarity=0.544 Sum_probs=155.1
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceE-eCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLV-LGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~-i~g~~ip~ 79 (189)
|+|++++|+.||++|+|+++||++++ +.+++.+|||++||++||||++|++|...|.+.+|.. ++|+.||+
T Consensus 321 l~w~l~~La~~Pevq~kl~~Ei~~v~--------~~~dl~~L~Yl~avi~EtLRl~P~vp~~~r~~~~d~~~~~G~~Ipk 392 (500)
T PLN02169 321 LTWFFWLLSKHPQVMAKIRHEINTKF--------DNEDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDA 392 (500)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHhhC--------CHHHHhcCHHHHHHHHHHHhcCCCCCcCceecCCCCCccCCEEECC
Confidence 58999999999999999999998764 4588999999999999999999999998887766655 49999999
Q ss_pred CCEEEEeeeccccCCCCC-CCCCCcCCCCCCCCCCCCC--CCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEe
Q psy2604 80 QSNIGIMSYLMHRSPELY-PDPEKFDPERFSKENSAGR--HPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEA 156 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~~~--~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~ 156 (189)
|+.|.++.|++||||++| +||++|+||||+++++... ....|+|||.|+|+|+|+++|++|++++++.|+++|+|+.
T Consensus 393 Gt~v~i~~~~ihrd~~~w~~dP~~F~PeRfl~~~~~~~~~~~~~~lPFG~GpR~CiG~~~A~~e~k~~la~ll~~f~~~~ 472 (500)
T PLN02169 393 ESKIVICIYALGRMRSVWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNYDFKV 472 (500)
T ss_pred CCEEEEcHHHhhCCccccCCChhhcCccccCCCCCCccCCCCccccCCCCCCCCCcCHHHHHHHHHHHHHHHHHHCEEEE
Confidence 999999999999999999 8999999999997654332 3678999999999999999999999999999999999998
Q ss_pred cCCCCCceecceEEEeecCCeeEEEEEEc
Q psy2604 157 VSSPDQVKCIPYVVLRPLNSELMVRITPR 185 (189)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~R 185 (189)
.++. .+......++.|+++ +.+++++|
T Consensus 473 ~~~~-~~~~~~~~~l~~~~g-l~l~l~~~ 499 (500)
T PLN02169 473 IEGH-KIEAIPSILLRMKHG-LKVTVTKK 499 (500)
T ss_pred cCCC-CcccccceEEecCCC-EEEEEEeC
Confidence 7643 334455678899999 99999887
No 6
>PLN02738 carotene beta-ring hydroxylase
Probab=100.00 E-value=1.3e-45 Score=320.25 Aligned_cols=184 Identities=32% Similarity=0.576 Sum_probs=164.0
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQ 80 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g 80 (189)
|+|++++|++||++|+||++|++++++ + ..++.+++.+||||+|||+|+||++|+++.+.|++.+|+.++||.||+|
T Consensus 411 Lt~~l~~L~~~Pevq~kLreEl~~v~~-~--~~~t~edL~kLPYL~AVIkEtLRL~p~~p~~~R~a~~d~~i~gy~IPkG 487 (633)
T PLN02738 411 LTWTFYLLSKEPSVVAKLQEEVDSVLG-D--RFPTIEDMKKLKYTTRVINESLRLYPQPPVLIRRSLENDMLGGYPIKRG 487 (633)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHhcC-C--CCCCHHHHccCHHHHHHHHHHHhcCCCccccceeeccCceECCEEECCC
Confidence 589999999999999999999999987 3 5679999999999999999999999999988899999999999999999
Q ss_pred CEEEEeeeccccCCCCCCCCCCcCCCCCCCCCC---CCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEec
Q psy2604 81 SNIGIMSYLMHRSPELYPDPEKFDPERFSKENS---AGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAV 157 (189)
Q Consensus 81 ~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~---~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~ 157 (189)
|.|.++.|.+|+||++|+||++|+||||+..+. .......++|||.|+|+|+|++||.+|++++++.|+++|+|++.
T Consensus 488 T~V~~s~~~ihrdp~ifpdP~~F~PERWl~~~~~~~~~~~~~~~vpFG~G~R~CiG~~lA~~El~l~LA~Llr~F~~el~ 567 (633)
T PLN02738 488 EDIFISVWNLHRSPKHWDDAEKFNPERWPLDGPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLVRRFDFQLA 567 (633)
T ss_pred CEEEecHHHHhCCccccCCccccCcccCCCCCCCccccCCCCceeCCCCCCCCCcCHHHHHHHHHHHHHHHHHhCeeEeC
Confidence 999999999999999999999999999985321 12345689999999999999999999999999999999999987
Q ss_pred CCCCCceecceEEEeecCCeeEEEEEEccCC
Q psy2604 158 SSPDQVKCIPYVVLRPLNSELMVRITPRRNA 188 (189)
Q Consensus 158 ~~~~~~~~~~~~~~~p~~~~~~v~~~~R~~~ 188 (189)
.+..+.......++.|+++ +++++++|..+
T Consensus 568 ~~~~~~~~~~~~~~~p~~~-l~v~l~~R~~~ 597 (633)
T PLN02738 568 PGAPPVKMTTGATIHTTEG-LKMTVTRRTKP 597 (633)
T ss_pred CCCCCcccccceEEeeCCC-cEEEEEECCCC
Confidence 6644344444677888888 99999999653
No 7
>PLN02971 tryptophan N-hydroxylase
Probab=100.00 E-value=9e-46 Score=317.48 Aligned_cols=180 Identities=22% Similarity=0.416 Sum_probs=158.8
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~ 79 (189)
|+|++++|++||++|+|+++||+++++ ++ +.++.+++.+|||++|||+|++|++|+++. ++|.+.+|+.++||.|||
T Consensus 347 l~~~l~~La~~Pevq~kl~~EI~~v~g-~~-~~~t~~d~~~LpYl~avi~E~lRl~p~~~~~~~r~~~~d~~~~G~~Ipk 424 (543)
T PLN02971 347 VEWAMAEMINKPEILHKAMEEIDRVVG-KE-RFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVALSDTTVAGYHIPK 424 (543)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhC-CC-CCCCHHHhccCHHHHHHHHHHHhcCCCcccCcceecCCCeeECCEEECC
Confidence 579999999999999999999999998 43 678999999999999999999999999997 789999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCC---CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEe
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA---GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEA 156 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~---~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~ 156 (189)
|+.|+++.|++|+||++|+||++|+||||++++.. ......++|||.|+|.|+|+++|.+|++++++.|+++|+|+.
T Consensus 425 Gt~v~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~~~~ 504 (543)
T PLN02971 425 GSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKRGCAAPALGTAITTMMLARLLQGFKWKL 504 (543)
T ss_pred CCEEEECcHHhcCChhhCCCccccCcccCCCCCccccccCCCCccCCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCEEEe
Confidence 99999999999999999999999999999975432 124567999999999999999999999999999999999998
Q ss_pred cCCCC--CceecceEEE-eecCCeeEEEEEEc
Q psy2604 157 VSSPD--QVKCIPYVVL-RPLNSELMVRITPR 185 (189)
Q Consensus 157 ~~~~~--~~~~~~~~~~-~p~~~~~~v~~~~R 185 (189)
.++.. +.....+ ++ .+. + +.+.+++|
T Consensus 505 ~~~~~~~~~~~~~~-~~~~~~-~-~~~~~~~~ 533 (543)
T PLN02971 505 AGSETRVELMESSH-DMFLSK-P-LVMVGELR 533 (543)
T ss_pred CCCCCCcchhhhcC-cccccc-c-ceeeeeec
Confidence 76432 2333444 45 444 6 89999988
No 8
>PLN02500 cytochrome P450 90B1
Probab=100.00 E-value=1.2e-45 Score=313.18 Aligned_cols=180 Identities=23% Similarity=0.397 Sum_probs=155.2
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCC---CCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEe
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGP---QECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTI 77 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~---~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~i 77 (189)
|+|++++|++||++|+|+++||+++.+. .....++.+++.+|||++|||+|++|++|+++.+.|.+.+|++++||.|
T Consensus 299 l~~~l~~L~~~Pevq~kl~~Ei~~v~~~~~~~~~~~~~~~d~~~lpyl~avikEtlRl~P~~~~~~R~~~~d~~~~G~~I 378 (490)
T PLN02500 299 IALAIFFLQGCPKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALKDVRYKGYDI 378 (490)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhhccccCCCCCCCHHHhccCHHHHHHHHHHHhcCCCccCeeeEeCCCceeCCEEE
Confidence 5799999999999999999999998741 1124579999999999999999999999999998899999999999999
Q ss_pred CCCCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCC-------CCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhh
Q psy2604 78 PAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAG-------RHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLR 150 (189)
Q Consensus 78 p~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~-------~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~ 150 (189)
|||+.|.++.|++||||++|+||++|+|+||++++... .....++|||.|+|.|+|+++|.+|++++++.|++
T Consensus 379 PkGt~V~~~~~~~hrdp~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~~~lpFG~G~R~CiG~~~A~~el~~~la~ll~ 458 (490)
T PLN02500 379 PSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNFMPFGGGPRLCAGSELAKLEMAVFIHHLVL 458 (490)
T ss_pred CCCCEEEechhhcccCcccCCCccccChhhccCCCcccccccccCCCCCCCcCCCCCCCCCCcHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999754321 23567999999999999999999999999999999
Q ss_pred ccEEEecCCCCCceecceEEEeecCCeeEEEEEE
Q psy2604 151 KFRFEAVSSPDQVKCIPYVVLRPLNSELMVRITP 184 (189)
Q Consensus 151 ~f~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~ 184 (189)
+|+|++.++.... .. . ...+.++ +++++++
T Consensus 459 ~f~~~~~~~~~~~-~~-~-~~~~~~~-l~~~~~~ 488 (490)
T PLN02500 459 NFNWELAEADQAF-AF-P-FVDFPKG-LPIRVRR 488 (490)
T ss_pred ccEEEEcCCCcce-ec-c-cccCCCC-ceEEEEe
Confidence 9999987653322 11 2 2344567 8988875
No 9
>PLN02394 trans-cinnamate 4-monooxygenase
Probab=100.00 E-value=1.1e-45 Score=314.19 Aligned_cols=182 Identities=28% Similarity=0.492 Sum_probs=158.7
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccc-eeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYI-SRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+||++||+++++ .+ ..++.+++.+|||++|||+|++|++|++++. .|.+.+|++++||.||+
T Consensus 313 l~~~l~~L~~~P~vq~kl~~Ei~~v~~-~~-~~~~~~~l~~lpyl~avi~EtlRl~p~~~~~~~r~~~~d~~i~g~~IP~ 390 (503)
T PLN02394 313 IEWGIAELVNHPEIQKKLRDELDTVLG-PG-NQVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLGGYDIPA 390 (503)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHhC-CC-CCCCHhHHhhCHHHHHHHHHHHhcCCCcccccceecCCCcccCCEEeCC
Confidence 479999999999999999999999998 43 5678999999999999999999999999984 78889999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCC---CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEe
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA---GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEA 156 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~---~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~ 156 (189)
||.|.++.|++|+||++|+||++|+||||+++++. ......++|||.|+|+|+|+++|.+|+++++|.|+++|++++
T Consensus 391 Gt~V~~~~~~~~rd~~~~~~P~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~ 470 (503)
T PLN02394 391 ESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRSCPGIILALPILGIVLGRLVQNFELLP 470 (503)
T ss_pred CCEEEEchHHHhCCcccCCCccccCccccCCCCCcccccCCCCceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHHceeEe
Confidence 99999999999999999999999999999975432 123567999999999999999999999999999999999998
Q ss_pred cCCCC--Cceecc-eEEE-eecCCeeEEEEEEcc
Q psy2604 157 VSSPD--QVKCIP-YVVL-RPLNSELMVRITPRR 186 (189)
Q Consensus 157 ~~~~~--~~~~~~-~~~~-~p~~~~~~v~~~~R~ 186 (189)
.++.+ +..... +++. .|+ + +.+++.+|.
T Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~r~ 502 (503)
T PLN02394 471 PPGQSKIDVSEKGGQFSLHIAK-H-STVVFKPRS 502 (503)
T ss_pred CCCCCcCccccccCceeeccCC-C-ceEEeecCC
Confidence 76642 222223 3555 555 7 999999985
No 10
>PLN00168 Cytochrome P450; Provisional
Probab=100.00 E-value=1.7e-45 Score=314.37 Aligned_cols=184 Identities=26% Similarity=0.424 Sum_probs=161.0
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+|+++||+++++ +..+.++.+++.+|||++|||+|++|++|+++. ++|.+.+|++++||.||+
T Consensus 326 l~~~l~~L~~~P~~q~kl~~Ei~~v~~-~~~~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ipk 404 (519)
T PLN00168 326 LQWIMAELVKNPSIQSKLHDEIKAKTG-DDQEEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDMEVGGYLIPK 404 (519)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhC-CCCCCCCHHHhhCChHHHHHHHHHhhcCCCCcccCCccCCCCccCCCEEECC
Confidence 579999999999999999999999997 433568999999999999999999999999987 589999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCC------CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccE
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA------GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFR 153 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~------~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~ 153 (189)
|+.|.++.+++|+||++|+||++|+|+||+++... ......++|||.|+|+|+|++||.+|++++++.|+++|+
T Consensus 405 Gt~v~~~~~~~~~d~~~~~~p~~F~PeRf~~~~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~lA~~e~~~~la~ll~~f~ 484 (519)
T PLN00168 405 GATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFGVGRRICAGLGIAMLHLEYFVANMVREFE 484 (519)
T ss_pred CCEEEEChHHHhcCccccCCccccCcccCCCCCCCccccccccCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHHcc
Confidence 99999999999999999999999999999974321 123457999999999999999999999999999999999
Q ss_pred EEecCCCC-CceecceEEEeecCCeeEEEEEEcc
Q psy2604 154 FEAVSSPD-QVKCIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 154 ~~~~~~~~-~~~~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
|++.++.. +.....+++..++++ +.+++++|+
T Consensus 485 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~ 517 (519)
T PLN00168 485 WKEVPGDEVDFAEKREFTTVMAKP-LRARLVPRR 517 (519)
T ss_pred ceeCCCCcCChhhhceeEEeecCC-cEEEEEecc
Confidence 99876532 222223456777778 999999986
No 11
>PLN02290 cytokinin trans-hydroxylase
Probab=100.00 E-value=1.7e-45 Score=314.04 Aligned_cols=179 Identities=36% Similarity=0.584 Sum_probs=160.9
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQ 80 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g 80 (189)
|+|++++|++||++|+|+++||+++++ + ..++.+++++|||++|||+||+|++|+++.++|.+.+|++++|+.||+|
T Consensus 336 l~~~l~~L~~~P~vq~kl~~Ei~~v~~-~--~~~~~~~l~~lpYl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~IP~G 412 (516)
T PLN02290 336 LTWTLMLLASNPTWQDKVRAEVAEVCG-G--ETPSVDHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKLGDLHIPKG 412 (516)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhC-C--CCCCHHHHhcChHHHHHHHHHHHcCCCccccceeecCCeeECCEEECCC
Confidence 579999999999999999999999998 3 3679999999999999999999999999988999999999999999999
Q ss_pred CEEEEeeeccccCCCCC-CCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecCC
Q psy2604 81 SNIGIMSYLMHRSPELY-PDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSS 159 (189)
Q Consensus 81 ~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 159 (189)
+.|.++.+++|+||++| +||++|+||||++.+ ......++|||.|+|.|+|+++|++|++++++.|+++|++++.++
T Consensus 413 t~V~~~~~~~~rdp~~~~~dP~~F~PeRfl~~~--~~~~~~~~pFG~G~R~C~G~~lA~~el~l~la~ll~~f~~~~~~~ 490 (516)
T PLN02290 413 LSIWIPVLAIHHSEELWGKDANEFNPDRFAGRP--FAPGRHFIPFAAGPRNCIGQAFAMMEAKIILAMLISKFSFTISDN 490 (516)
T ss_pred CEEEecHHHhcCChhhhCCChhhcCccccCCCC--CCCCCeEecCCCCCCCCccHHHHHHHHHHHHHHHHHhceEeeCCC
Confidence 99999999999999999 899999999999542 123457999999999999999999999999999999999998765
Q ss_pred CCCceecceEEEeecCCeeEEEEEEcc
Q psy2604 160 PDQVKCIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
.. .......++.|+++ +.+++++|.
T Consensus 491 ~~-~~~~~~~~~~p~~~-~~~~~~~~~ 515 (516)
T PLN02290 491 YR-HAPVVVLTIKPKYG-VQVCLKPLN 515 (516)
T ss_pred cc-cCccceeeecCCCC-CeEEEEeCC
Confidence 32 22233678899988 999999985
No 12
>PTZ00404 cytochrome P450; Provisional
Probab=100.00 E-value=1.2e-45 Score=312.49 Aligned_cols=177 Identities=26% Similarity=0.476 Sum_probs=157.6
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEe-CCEEeC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVL-GEYTIP 78 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i-~g~~ip 78 (189)
|+|++++|++||++|+||++||+++++ +. ..++.+++.+|||++|||+|++|++|+++. ++|.+.+|+++ +|+.||
T Consensus 303 l~~~l~~L~~~P~vq~kl~~Ei~~v~~-~~-~~~~~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~l~~g~~Ip 380 (482)
T PTZ00404 303 LEWMVLMLCNYPEIQEKAYNEIKSTVN-GR-NKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDIIIGGGHFIP 380 (482)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhc-CC-CCCCccccccChHHHHHHHHHHHhcCCcccccceeccCCEEecCCeEEC
Confidence 589999999999999999999999998 43 567899999999999999999999999997 69999999999 999999
Q ss_pred CCCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecC
Q psy2604 79 AQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVS 158 (189)
Q Consensus 79 ~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~ 158 (189)
+|+.|.++.+++|+||++|+||++|+||||++.. ....++|||.|+|+|+|+++|.+|++++++.|+++|+++..+
T Consensus 381 ~Gt~V~~~~~a~hrdp~~~~dP~~F~PeRwl~~~----~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~~~~~ 456 (482)
T PTZ00404 381 KDAQILINYYSLGRNEKYFENPEQFDPSRFLNPD----SNDAFMPFSIGPRNCVGQQFAQDELYLAFSNIILNFKLKSID 456 (482)
T ss_pred CCCEEEeeHHHhhCCccccCCccccCccccCCCC----CCCceeccCCCCCCCccHHHHHHHHHHHHHHHHHhcEEecCC
Confidence 9999999999999999999999999999998642 356899999999999999999999999999999999999876
Q ss_pred CCCC-ceecceEEEeecCCeeEEEEEEc
Q psy2604 159 SPDQ-VKCIPYVVLRPLNSELMVRITPR 185 (189)
Q Consensus 159 ~~~~-~~~~~~~~~~p~~~~~~v~~~~R 185 (189)
+... .....+.++.|. + +.+.+++|
T Consensus 457 ~~~~~~~~~~~~~~~~~-~-~~v~~~~R 482 (482)
T PTZ00404 457 GKKIDETEEYGLTLKPN-K-FKVLLEKR 482 (482)
T ss_pred CCCCCcccccceeecCC-C-ceeeeecC
Confidence 5332 233345666654 7 89999887
No 13
>PLN02426 cytochrome P450, family 94, subfamily C protein
Probab=100.00 E-value=2.8e-45 Score=311.69 Aligned_cols=184 Identities=28% Similarity=0.475 Sum_probs=162.4
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEe-CCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVL-GEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i-~g~~ip~ 79 (189)
|+|++++|++||++|+|+++||+++.+ .....++.+++.+|||++|||+|++|++|+++...|.+.+|..+ +|+.||+
T Consensus 313 l~~~l~~L~~~P~v~~kl~~Ei~~~~~-~~~~~~t~~~l~~LpYl~avi~EtLRl~p~v~~~~r~~~~d~~~~~G~~Ip~ 391 (502)
T PLN02426 313 LTSFFWLLSKHPEVASAIREEADRVMG-PNQEAASFEEMKEMHYLHAALYESMRLFPPVQFDSKFAAEDDVLPDGTFVAK 391 (502)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhC-CCCCCCCHHHHhcChHHHHHHHHHHhCCCCCCCcceeeccCCCcCCCcEECC
Confidence 579999999999999999999999987 43346899999999999999999999999999888999988777 9999999
Q ss_pred CCEEEEeeeccccCCCCC-CCCCCcCCCCCCCCCCC-CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEec
Q psy2604 80 QSNIGIMSYLMHRSPELY-PDPEKFDPERFSKENSA-GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAV 157 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~-~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~ 157 (189)
|+.|.++.+++||||++| +||++|+||||++++.. ......++|||.|+|.|+|+++|.+|++++++.|+++|+++..
T Consensus 392 Gt~V~~~~~~~~rd~~~~G~dp~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~CiG~~~A~~e~~~~la~ll~~f~~~~~ 471 (502)
T PLN02426 392 GTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPENPFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVV 471 (502)
T ss_pred CCEEEEchHHhcCCccccCcChhhcCccccCCCCCcCCCCCcccCCCCCCCCCCccHHHHHHHHHHHHHHHHHHceEEEe
Confidence 999999999999999999 99999999999974321 2345678999999999999999999999999999999999986
Q ss_pred CCCC-CceecceEEEeecCCeeEEEEEEcc
Q psy2604 158 SSPD-QVKCIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 158 ~~~~-~~~~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
++.. ......+.++.|+++ +.+++++|.
T Consensus 472 ~~~~~~~~~~~~~~~~~~~g-l~v~~~~r~ 500 (502)
T PLN02426 472 GRSNRAPRFAPGLTATVRGG-LPVRVRERV 500 (502)
T ss_pred cCCCCCCcccceeEEecCCC-EEEEEEEcc
Confidence 5432 234445678899989 999999885
No 14
>PLN02183 ferulate 5-hydroxylase
Probab=100.00 E-value=2.2e-45 Score=313.38 Aligned_cols=182 Identities=25% Similarity=0.425 Sum_probs=156.4
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQ 80 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g 80 (189)
|+|++++|++||++|+|+++||+++++ .. ..++.+++.+|||++|||+|++|++|+++...|.+.+|++++||.||||
T Consensus 324 l~~~l~~La~~Pevq~kl~~Ei~~v~~-~~-~~~~~~~l~~L~yl~avi~EtlRl~p~~p~~~r~~~~d~~l~g~~IPkG 401 (516)
T PLN02183 324 IEWAMAELMKSPEDLKRVQQELADVVG-LN-RRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAGYFIPKR 401 (516)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHcC-CC-CCCCHHHhccChHHHHHHHHHhccCCCccceeeeccCceeECCEEECCC
Confidence 589999999999999999999999998 43 5689999999999999999999999999998899999999999999999
Q ss_pred CEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCC--CCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecC
Q psy2604 81 SNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAG--RHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVS 158 (189)
Q Consensus 81 ~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~--~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~ 158 (189)
+.|.++.|++||||++|+||++|+||||++++... .....++|||.|+|+|+|+++|.+|+++++|.|+++|+++..+
T Consensus 402 t~V~~~~~~~hrd~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~lpFG~G~R~CiG~~lA~~e~~l~la~ll~~f~~~~~~ 481 (516)
T PLN02183 402 SRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLLHCFTWELPD 481 (516)
T ss_pred CEEEEehhhhcCCccccCCccccCchhhCCCCCccccCCcceecCCCCCCCCCCChHHHHHHHHHHHHHHHheeEEEcCC
Confidence 99999999999999999999999999999755322 2456899999999999999999999999999999999999876
Q ss_pred CCC--Ccee--cceEEEeecCCeeEEEEEEc
Q psy2604 159 SPD--QVKC--IPYVVLRPLNSELMVRITPR 185 (189)
Q Consensus 159 ~~~--~~~~--~~~~~~~p~~~~~~v~~~~R 185 (189)
+.. .... ..+.+..+.++ +.+.+++|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r 511 (516)
T PLN02183 482 GMKPSELDMNDVFGLTAPRATR-LVAVPTYR 511 (516)
T ss_pred CCCCCCCChhhccccccccCCC-cEEEeecC
Confidence 532 1221 22333323335 67777776
No 15
>PLN03195 fatty acid omega-hydroxylase; Provisional
Probab=100.00 E-value=1.8e-45 Score=313.94 Aligned_cols=184 Identities=30% Similarity=0.464 Sum_probs=157.9
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCC------------------CCCCCCHHHhccChhHHHHHhhhcCCCCCcccc
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQ------------------ECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYI 62 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~------------------~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~ 62 (189)
++|++++|++||++|+||++|++++++.. ....++.+++.+|||++|||+|+||++|+++..
T Consensus 312 l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lpyl~Avi~EtLRl~p~~p~~ 391 (516)
T PLN03195 312 LSWFVYMIMMNPHVAEKLYSELKALEKERAKEEDPEDSQSFNQRVTQFAGLLTYDSLGKLQYLHAVITETLRLYPAVPQD 391 (516)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhhhcccccccccccchhhhhcccccCCCCHHHHhcCHHHHHHHHHHhhcCCCCcch
Confidence 57999999999999999999999987521 024578999999999999999999999999998
Q ss_pred eeeeccceEe-CCEEeCCCCEEEEeeeccccCCCCC-CCCCCcCCCCCCCCCC-CCCCCcccccCCCCCCCcccHHHHHH
Q psy2604 63 SRWLEQDLVL-GEYTIPAQSNIGIMSYLMHRSPELY-PDPEKFDPERFSKENS-AGRHPFAYIPFSAGPRNCIGQRFAMM 139 (189)
Q Consensus 63 ~r~~~~~~~i-~g~~ip~g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~A~~ 139 (189)
.|.+.+|..+ +|+.||+|+.|.++.|++|+||++| +||++|+||||++.+. .......++|||.|+|+|+|+++|++
T Consensus 392 ~r~~~~d~~~~~G~~IpkGt~V~~~~~~~h~dp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFG~G~R~CiG~~lA~~ 471 (516)
T PLN03195 392 PKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNWGPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYL 471 (516)
T ss_pred hhhhccCcCcCCCcEECCCCEEEEehHhhccChhhhccChhhcCCcccCCCCCcCCCCCceEeccCCCCCcCcCHHHHHH
Confidence 7777776665 9999999999999999999999999 9999999999996432 22345679999999999999999999
Q ss_pred HHHHHHHHHhhccEEEecCCCCCceecceEEEeecCCeeEEEEEEcc
Q psy2604 140 EEKVILTQLLRKFRFEAVSSPDQVKCIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 140 ~~~~~l~~ll~~f~~~~~~~~~~~~~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
|++++++.|+++|+++..++. +.......++.|+++ +.|++++|.
T Consensus 472 e~~~~la~ll~~f~~~~~~~~-~~~~~~~~~~~~~~~-~~v~~~~r~ 516 (516)
T PLN03195 472 QMKMALALLCRFFKFQLVPGH-PVKYRMMTILSMANG-LKVTVSRRS 516 (516)
T ss_pred HHHHHHHHHHHhceeEecCCC-cceeeeeeEEecCCC-EEEEEEeCC
Confidence 999999999999999986543 333344556788888 999999884
No 16
>PLN02655 ent-kaurene oxidase
Probab=100.00 E-value=4.3e-45 Score=308.16 Aligned_cols=183 Identities=27% Similarity=0.495 Sum_probs=164.0
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccc-eeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYI-SRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~i~g~~ip~ 79 (189)
|+|++++|++||++|+|+++||+++++ +. .++.+++.++||+++|++|+||++|+++.. +|.+.+|++++|+.||+
T Consensus 282 l~~~~~~l~~~p~~~~~l~~Ei~~~~~-~~--~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~r~~~~d~~~~g~~ip~ 358 (466)
T PLN02655 282 TEWAMYELAKNPDKQERLYREIREVCG-DE--RVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLGGYDIPA 358 (466)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHhC-CC--CCCHHHHhcChHHHHHHHHHhccCCCcCCCCCcccCCCcccCCEEECC
Confidence 579999999999999999999999998 43 389999999999999999999999999885 79999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecCC
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSS 159 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 159 (189)
|+.|+++.+++|+|+++|+||++|+|+||++++........++|||.|+|.|+|+++|..+++++++.||++|++++.++
T Consensus 359 gt~v~~~~~~~~~d~~~~~~p~~F~PeR~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 438 (466)
T PLN02655 359 GTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAGSLQAMLIACMAIARLVQEFEWRLREG 438 (466)
T ss_pred CCEEEecHHHhcCCcccCCChhccCccccCCCCcccCCcccccCCCCCCCCCCcHHHHHHHHHHHHHHHHHHeEEEeCCC
Confidence 99999999999999999999999999999976543334578999999999999999999999999999999999998766
Q ss_pred CCCceecceEEEeecCCeeEEEEEEccC
Q psy2604 160 PDQVKCIPYVVLRPLNSELMVRITPRRN 187 (189)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~v~~~~R~~ 187 (189)
........+.+..++++ +.+++++|.+
T Consensus 439 ~~~~~~~~~~~~~~~~~-~~~~~~~r~~ 465 (466)
T PLN02655 439 DEEKEDTVQLTTQKLHP-LHAHLKPRGS 465 (466)
T ss_pred CccccchhheeEeecCC-cEEEEeecCC
Confidence 43333445677788888 9999999865
No 17
>PF00067 p450: Cytochrome P450 p450 superfamily signature b-class p450 signature mitochondrial p450 signature E-class p450 group I signature E-class p450 group II signature E-class p450 group IV signature; InterPro: IPR001128 Cytochrome P450 enzymes are a superfamily of haem-containing mono-oxygenases that are found in all kingdoms of life, and which show extraordinary diversity in their reaction chemistry. In mammals, these proteins are found primarily in microsomes of hepatocytes and other cell types, where they oxidise steroids, fatty acids and xenobiotics, and are important for the detoxification and clearance of various compounds, as well as for hormone synthesis and breakdown, cholesterol synthesis and vitamin D metabolism. In plants, these proteins are important for the biosynthesis of several compounds such as hormones, defensive compounds and fatty acids. In bacteria, they are important for several metabolic processes, such as the biosynthesis of antibiotic erythromycin in Saccharopolyspora erythraea (Streptomyces erythraeus). Cytochrome P450 enzymes use haem to oxidise their substrates, using protons derived from NADH or NADPH to split the oxygen so a single atom can be added to a substrate. They also require electrons, which they receive from a variety of redox partners. In certain cases, cytochrome P450 can be fused to its redox partner to produce a bi-functional protein, such as with P450BM-3 from Bacillus megaterium [], which has haem and flavin domains. Organisms produce many different cytochrome P450 enzymes (at least 58 in humans), which together with alternative splicing can provide a wide array of enzymes with different substrate and tissue specificities. Individual cytochrome P450 proteins follow the nomenclature: CYP, followed by a number (family), then a letter (subfamily), and another number (protein); e.g. CYP3A4 is the fourth protein in family 3, subfamily A. In general, family members should share >40% identity, while subfamily members should share >55% identity. Cytochrome P450 proteins can also be grouped by two different schemes. One scheme was based on a taxonomic split: class I (prokaryotic/mitochondrial) and class II (eukaryotic microsomes). The other scheme was based on the number of components in the system: class B (3-components) and class E (2-components). These classes merge to a certain degree. Most prokaryotes and mitochondria (and fungal CYP55) have 3-component systems (class I/class B) - a FAD-containing flavoprotein (NAD(P)H-dependent reductase), an iron-sulphur protein and P450. Most eukaryotic microsomes have 2-component systems (class II/class E) - NADPH:P450 reductase (FAD and FMN-containing flavoprotein) and P450. There are exceptions to this scheme, such as 1-component systems that resemble class E enzymes [, , ]. The class E enzymes can be further subdivided into five sequence clusters, groups I-V, each of which may contain more than one cytochrome P450 family (eg, CYP1 and CYP2 are both found in group I). The divergence of the cytochrome P450 superfamily into B- and E-classes, and further divergence into stable clusters within the E-class, appears to be very ancient, occurring before the appearance of eukaryotes. More information about these proteins can be found at Protein of the Month: Cytochrome P450 [].; GO: 0005506 iron ion binding, 0009055 electron carrier activity, 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0020037 heme binding, 0055114 oxidation-reduction process; PDB: 2RFC_B 2RFB_A 3EJB_H 3EJE_H 3EJD_H 1N6B_A 1NR6_A 1DT6_A 3EL3_A 3DBG_B ....
Probab=100.00 E-value=1e-45 Score=306.85 Aligned_cols=178 Identities=41% Similarity=0.737 Sum_probs=153.8
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcc-cceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVP-YISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~-~~~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+||++||+++.+ +. ..++.+++.+||||+|||+|++|++|+++ .++|.+.+|++++||.||+
T Consensus 282 l~~~l~~L~~~P~~~~kl~~Ei~~~~~-~~-~~~~~~~l~~l~yl~a~i~EtlRl~p~~~~~~~R~~~~d~~l~g~~ip~ 359 (463)
T PF00067_consen 282 LSWTLYELAKNPEVQEKLREEIDSVLG-DG-REITFEDLSKLPYLDAVIKETLRLYPPVPFSLPRVATEDVTLGGYFIPK 359 (463)
T ss_dssp HHHHHHHHHHSHHHHHHHHHHHHHHTT-TS-SSHHHHHHGTGHHHHHHHHHHHHHSTSSSTEEEEEESSSEEETTEEEET
T ss_pred ccccccccccccccccccccccccccc-cc-ccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 479999999999999999999999986 43 57899999999999999999999999999 5899999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCC-CCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecC
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENS-AGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVS 158 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~ 158 (189)
|+.|.++.+++|+||++|+||++|+|+||++.+. .......++|||.|+|.|+|+++|.+|++++++.||++|++++.+
T Consensus 360 gt~v~~~~~~~~~d~~~~~dp~~F~P~R~~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~la~ll~~f~~~~~~ 439 (463)
T PF00067_consen 360 GTIVIVSIYALHRDPEYFPDPDEFDPERFLDERGISNRPSFAFLPFGAGPRMCPGRNLAMMEMKVFLAKLLRRFDFELVP 439 (463)
T ss_dssp TSEEEEEHHHHTTSTTTSSSTTS--TTGGBTTTSTBCSSSTTSSTTESSTTS-TTHHHHHHHHHHHHHHHHHHEEEEEST
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccchHHHHHHHHHHHHHHHHHHhCEEEECC
Confidence 9999999999999999999999999999998876 345678899999999999999999999999999999999999976
Q ss_pred CCCC-ceecc-eEEEeecCCeeEEEE
Q psy2604 159 SPDQ-VKCIP-YVVLRPLNSELMVRI 182 (189)
Q Consensus 159 ~~~~-~~~~~-~~~~~p~~~~~~v~~ 182 (189)
+... ..... +++..|+ + +.|+|
T Consensus 440 ~~~~~~~~~~~~~~~~~~-~-~~~~~ 463 (463)
T PF00067_consen 440 GSEPEPQEQQNGFLLPPK-P-LKVKF 463 (463)
T ss_dssp TSSGGEEECSCSSSEEES-S-SEEEE
T ss_pred CCCCCCccccCceEeeCC-C-cEEeC
Confidence 5432 22222 3344444 6 77765
No 18
>PLN03234 cytochrome P450 83B1; Provisional
Probab=100.00 E-value=5.1e-45 Score=309.91 Aligned_cols=182 Identities=25% Similarity=0.460 Sum_probs=157.0
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~ 79 (189)
|+|++++|++||++|+|+++|++++++ +. +.++.+++.+|||++|||+|++|++|+++. +.|.+.+|++++||.||+
T Consensus 308 l~~~l~~L~~~P~v~~kl~~Ei~~~~~-~~-~~~~~~~l~~l~yl~avi~E~lRl~p~~~~~~~R~~~~d~~~~g~~IP~ 385 (499)
T PLN03234 308 VVWAMTYLIKYPEAMKKAQDEVRNVIG-DK-GYVSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPA 385 (499)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhC-CC-CCCCHHHHhcChHHHHHHHHHhccCCCccccCCcccCCCeeECCEEECC
Confidence 579999999999999999999999998 43 568999999999999999999999999998 479999999999999999
Q ss_pred CCEEEEeeeccccCCCCC-CCCCCcCCCCCCCCCCC---CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEE
Q psy2604 80 QSNIGIMSYLMHRSPELY-PDPEKFDPERFSKENSA---GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFE 155 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~---~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~ 155 (189)
||.|.++.+++||||++| +||++|+|+||+++... ......++|||.|+|+|+|+++|.+|++++++.|+++|+|+
T Consensus 386 Gt~v~~~~~~~~rd~~~~~~~P~~F~PeR~l~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~ 465 (499)
T PLN03234 386 KTIIQVNAWAVSRDTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANLLYKFDWS 465 (499)
T ss_pred CCEEEEehHhhhCCcccccCChhhcCchhhcCCCCCcCcCCCcceEeCCCCCCCCCCChHHHHHHHHHHHHHHHHheeee
Confidence 999999999999999999 89999999999975432 12356799999999999999999999999999999999999
Q ss_pred ecCCC--CCce--ecceEEEeecCCeeEEEEEEc
Q psy2604 156 AVSSP--DQVK--CIPYVVLRPLNSELMVRITPR 185 (189)
Q Consensus 156 ~~~~~--~~~~--~~~~~~~~p~~~~~~v~~~~R 185 (189)
+.++. ..+. ...+.+..|+.. +.+.+++|
T Consensus 466 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 498 (499)
T PLN03234 466 LPKGIKPEDIKMDVMTGLAMHKKEH-LVLAPTKH 498 (499)
T ss_pred CCCCCCCCCCCcccccccccccCCC-eEEEeecC
Confidence 98752 2222 344666667655 66655544
No 19
>PLN00110 flavonoid 3',5'-hydroxylase (F3'5'H); Provisional
Probab=100.00 E-value=7.7e-45 Score=309.29 Aligned_cols=183 Identities=27% Similarity=0.467 Sum_probs=161.5
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+|+++|++++++ +. ..++.+++++|||+++||+|++|++|+++. ++|.+.+|++++||.||+
T Consensus 309 l~~~l~~L~~~P~~~~kl~~Ei~~~~~-~~-~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~R~~~~d~~~~g~~Ip~ 386 (504)
T PLN00110 309 IEWSLAEMLKNPSILKRAHEEMDQVIG-RN-RRLVESDLPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPK 386 (504)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhC-CC-CCCCHHHhhcChHHHHHHHHHhcCCCCcccccccccCCCeeeCCEEECC
Confidence 479999999999999999999999998 43 568999999999999999999999999997 789999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCC----CCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEE
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGR----HPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFE 155 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~----~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~ 155 (189)
|+.|.++.+++|+||++|+||++|+|+||++++.... ....++|||.|+|.|+|+++|.+|++++++.|+++|+++
T Consensus 387 Gt~V~~~~~~~h~d~~~~~dP~~F~PeRfl~~~~~~~~~~~~~~~~~pFG~G~R~C~G~~~A~~e~~~~la~ll~~f~~~ 466 (504)
T PLN00110 387 NTRLSVNIWAIGRDPDVWENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSFDWK 466 (504)
T ss_pred CCEEEEeHHHhcCChhhcCCcccCCcccccCCCCcccccCCCeeeEeCCCCCCCCCCcHHHHHHHHHHHHHHHHHhceee
Confidence 9999999999999999999999999999996543221 134799999999999999999999999999999999999
Q ss_pred ecCCCC-CceecceEEEeecCCeeEEEEEEcc
Q psy2604 156 AVSSPD-QVKCIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 156 ~~~~~~-~~~~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
+.++.. ......+.++.|+.+ +.+++++|.
T Consensus 467 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~ 497 (504)
T PLN00110 467 LPDGVELNMDEAFGLALQKAVP-LSAMVTPRL 497 (504)
T ss_pred cCCCCccCcccccccccccCCC-ceEeeccCC
Confidence 876532 122234667778878 999999884
No 20
>PLN02774 brassinosteroid-6-oxidase
Probab=100.00 E-value=1.3e-44 Score=305.13 Aligned_cols=178 Identities=23% Similarity=0.342 Sum_probs=155.9
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCC-CCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQ-ECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~-~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+|+++|++++++.. ....++.+++.++||++|||+|++|++|+++.+.|.+.+|++++||.|||
T Consensus 284 l~w~l~~L~~~P~~q~kl~~Ei~~~~~~~~~~~~~~~~~l~~lpyl~a~ikE~lRl~P~v~~~~R~~~~d~~l~g~~Ipk 363 (463)
T PLN02774 284 SMMAVKYLHDHPKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDMELNGYVIPK 363 (463)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHHhccCCCCCCCHHHHhcCcHHHHHHHHHHhcCCCCCCcccccCCCeeECCEEECC
Confidence 47999999999999999999999998621 12568999999999999999999999999988889999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecCC
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSS 159 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 159 (189)
|+.|+++.+++|+||++|+||++|+||||++++.. ....++|||+|+|.|+|+++|.+|++++++.|+++|+|++.++
T Consensus 364 Gt~v~~~~~~~~rdp~~~~dP~~F~PeRfl~~~~~--~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~Ll~~f~~~~~~~ 441 (463)
T PLN02774 364 GWRIYVYTREINYDPFLYPDPMTFNPWRWLDKSLE--SHNYFFLFGGGTRLCPGKELGIVEISTFLHYFVTRYRWEEVGG 441 (463)
T ss_pred CCEEEEehHHhcCCcccCCChhccCchhcCCCCcC--CCccccCcCCCCCcCCcHHHHHHHHHHHHHHHHHhceEEECCC
Confidence 99999999999999999999999999999965421 1236899999999999999999999999999999999999765
Q ss_pred CCCceecceEEEeecCCeeEEEEEE
Q psy2604 160 PDQVKCIPYVVLRPLNSELMVRITP 184 (189)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~v~~~~ 184 (189)
.. ... ..++.|+++ +++++++
T Consensus 442 ~~-~~~--~~~~~p~~g-~~~~~~~ 462 (463)
T PLN02774 442 DK-LMK--FPRVEAPNG-LHIRVSP 462 (463)
T ss_pred Cc-ccc--CCCCCCCCC-ceEEeee
Confidence 32 222 224558888 9998874
No 21
>PLN03141 3-epi-6-deoxocathasterone 23-monooxygenase; Provisional
Probab=100.00 E-value=1.9e-44 Score=303.14 Aligned_cols=179 Identities=19% Similarity=0.289 Sum_probs=159.3
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCC--CCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGP--QECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIP 78 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~--~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip 78 (189)
|+|++++|+.||++|+++++|++++.+. ..+..++.+++.+|||++|||+|++|++|++++++|.+.+|++++||.||
T Consensus 271 l~~~~~~L~~~P~v~~kl~~Ei~~~~~~~~~~~~~~~~~~~~~lpyl~avi~E~lRl~p~~~~~~R~~~~d~~l~g~~IP 350 (452)
T PLN03141 271 MTLAVKFLSDCPVALQQLTEENMKLKRLKADTGEPLYWTDYMSLPFTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIP 350 (452)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHhccCCCCCCCCHHHHhccHHHHHHHHHHHhccCCcCCcceeecCCeeECCEEEC
Confidence 5799999999999999999999988641 12345789999999999999999999999998889999999999999999
Q ss_pred CCCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecC
Q psy2604 79 AQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVS 158 (189)
Q Consensus 79 ~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~ 158 (189)
+|+.|+++.+++|+|+++|+||++|+||||++.+. ....++|||.|+|.|+|+++|.+|++++++.|+++|+|+..+
T Consensus 351 kG~~V~~~~~~~~~d~~~~~dP~~F~PeRfl~~~~---~~~~~~pFG~G~R~C~G~~lA~~el~~~la~ll~~f~~~~~~ 427 (452)
T PLN03141 351 KGWCVLAYFRSVHLDEENYDNPYQFNPWRWQEKDM---NNSSFTPFGGGQRLCPGLDLARLEASIFLHHLVTRFRWVAEE 427 (452)
T ss_pred CCCEEEEehHhccCCchhcCCccccCcccccCCCC---CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcCeeecCC
Confidence 99999999999999999999999999999997532 356899999999999999999999999999999999999866
Q ss_pred CCCCceecceEEEeecCCeeEEEEEEccC
Q psy2604 159 SPDQVKCIPYVVLRPLNSELMVRITPRRN 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~v~~~~R~~ 187 (189)
+.. . ...++.|+++ +.|.+++|.+
T Consensus 428 ~~~--~--~~~~~~~~~~-~~~~~~~~~~ 451 (452)
T PLN03141 428 DTI--V--NFPTVRMKRK-LPIWVTRIDD 451 (452)
T ss_pred CCe--e--ecccccCCCC-ceEEEEeCCC
Confidence 531 1 2347788888 9999999965
No 22
>PLN03018 homomethionine N-hydroxylase
Probab=100.00 E-value=5.2e-44 Score=305.80 Aligned_cols=182 Identities=22% Similarity=0.439 Sum_probs=158.6
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccc-eeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYI-SRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+|+++||+++++ .. +.++.+++.+|||++|||+|++|++|+++.. .|.+.+|++++||.||+
T Consensus 334 l~~~l~~L~~~P~~q~kl~~Ei~~v~~-~~-~~~~~~~~~~lpyl~a~i~EtlRl~p~~~~~~~r~~~~d~~i~G~~Ipk 411 (534)
T PLN03018 334 MEWTLGEMLKNPEILRKALKELDEVVG-KD-RLVQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGYFIPK 411 (534)
T ss_pred HHHHHHHHHcCHHHHHHHHHHHHHHhC-CC-CCCCHHHhcCCHHHHHHHHHHHhcCCCccccCCcccCCCeeECCEEECC
Confidence 579999999999999999999999997 43 5689999999999999999999999999985 78999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCC------CCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccE
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAG------RHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFR 153 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~------~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~ 153 (189)
|+.|.++.+++|+||++|+||++|+|+||+++++.. .....++|||.|+|.|+|+++|.+|+++++++|+++|+
T Consensus 412 Gt~V~~~~~~~~~dp~~~~~p~~F~PeRfl~~~~~~~~~~~~~~~~~~lpFG~G~R~C~G~~lA~~e~~~~la~ll~~f~ 491 (534)
T PLN03018 412 GSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRRGCVGVKVGTIMMVMMLARFLQGFN 491 (534)
T ss_pred CCEEEEChHHhcCCcccCCCccccCCccCCCCCCccccccccCCCCCccCCCCCCCCCccHHHHHHHHHHHHHHHHHhce
Confidence 999999999999999999999999999999754321 23467999999999999999999999999999999999
Q ss_pred EEecCCCCCce--ecceEEEeecCCeeEEEEEEcc
Q psy2604 154 FEAVSSPDQVK--CIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 154 ~~~~~~~~~~~--~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
|+..++...+. ...+.+..| ++ +.+.+++|.
T Consensus 492 ~~~~~~~~~~~~~~~~~~~~~p-~~-~~v~~~~R~ 524 (534)
T PLN03018 492 WKLHQDFGPLSLEEDDASLLMA-KP-LLLSVEPRL 524 (534)
T ss_pred EEeCCCCCCCCccccccceecC-CC-eEEEEEecc
Confidence 99876532222 222444444 58 999999994
No 23
>PLN02966 cytochrome P450 83A1
Probab=100.00 E-value=6.8e-44 Score=303.34 Aligned_cols=159 Identities=26% Similarity=0.499 Sum_probs=144.8
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~ 79 (189)
|+|++++|++||++|+|+++||+++++......++.+++.+|||++|||+|++|++|+++. +.|.+.+|++++|+.||+
T Consensus 309 l~~~l~~L~~~P~~q~kl~~Ei~~v~~~~~~~~~~~~dl~~lpyl~avi~E~LRl~p~v~~~~~R~~~~d~~l~g~~IP~ 388 (502)
T PLN02966 309 VVWGMTYLMKYPQVLKKAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGYDIPA 388 (502)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhcccCCCcCCHhhccCCcHHHHHHHHHhccCCCcccccCcccCCCeeEccEEECC
Confidence 5899999999999999999999999973222357999999999999999999999999998 689999999999999999
Q ss_pred CCEEEEeeeccccCCCCC-CCCCCcCCCCCCCCCCCC-CCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEec
Q psy2604 80 QSNIGIMSYLMHRSPELY-PDPEKFDPERFSKENSAG-RHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAV 157 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~-~~p~~f~p~R~~~~~~~~-~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~ 157 (189)
||.|.++.|++||||++| +||++|+||||++++... .....++|||.|+|+|+|++||.+|+++++|.|+++|+|+..
T Consensus 389 Gt~V~~~~~~~~rdp~~~g~dP~~F~PeRwl~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~el~~~la~ll~~f~i~~~ 468 (502)
T PLN02966 389 GTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPGMRLGAAMLEVPYANLLLNFNFKLP 468 (502)
T ss_pred CCEEEEecccccCCcccccCChhhCChhhhcCCCCCcCCCcCCccCCCCCCCCCCCHHHHHHHHHHHHHHHHHhceeeCC
Confidence 999999999999999999 999999999999754321 245689999999999999999999999999999999999987
Q ss_pred CC
Q psy2604 158 SS 159 (189)
Q Consensus 158 ~~ 159 (189)
++
T Consensus 469 ~~ 470 (502)
T PLN02966 469 NG 470 (502)
T ss_pred CC
Confidence 65
No 24
>PLN02687 flavonoid 3'-monooxygenase
Probab=100.00 E-value=7.9e-44 Score=303.92 Aligned_cols=183 Identities=25% Similarity=0.463 Sum_probs=158.5
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+|+++||+++++ +. ..++.+++.+|||++|||+|++|++|+++. ++|.+.+|++++|+.||+
T Consensus 317 l~~~l~~L~~~P~~~~kl~~Ei~~~~~-~~-~~~~~~~l~~lpyl~a~i~EtlRl~p~~~~~~~R~~~~d~~~~g~~ip~ 394 (517)
T PLN02687 317 VEWAIAELIRHPDILKKAQEELDAVVG-RD-RLVSESDLPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPK 394 (517)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHcC-CC-CCCCHHHhhhCHHHHHHHHHHHccCCCccccccccCCCCeeECCEEECC
Confidence 579999999999999999999999987 43 568999999999999999999999999997 799999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCC-----CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEE
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA-----GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRF 154 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~ 154 (189)
|+.|.++.+++|+||++|+||++|+|+||++++.. ......++|||.|+|.|+|+++|.+|++++++.|+++|++
T Consensus 395 Gt~v~~~~~~~h~d~~~~~dp~~F~PeRfl~~~~~~~~~~~~~~~~~~pFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~ 474 (517)
T PLN02687 395 GATLLVNVWAIARDPEQWPDPLEFRPDRFLPGGEHAGVDVKGSDFELIPFGAGRRICAGLSWGLRMVTLLTATLVHAFDW 474 (517)
T ss_pred CCEEEEecHHhcCCcccCCCcccCCchhcCCCCCccccccCCCceeeCCCCCCCCCCCChHHHHHHHHHHHHHHHHhcce
Confidence 99999999999999999999999999999975322 1234579999999999999999999999999999999999
Q ss_pred EecCCCC--Cce--ecceEEEeecCCeeEEEEEEcc
Q psy2604 155 EAVSSPD--QVK--CIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 155 ~~~~~~~--~~~--~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
++.++.. .+. .....+..+..+ +.+++++|.
T Consensus 475 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~R~ 509 (517)
T PLN02687 475 ELADGQTPDKLNMEEAYGLTLQRAVP-LMVHPRPRL 509 (517)
T ss_pred ecCCCCCcccCCcccccceeeecCCC-eEEeeccCC
Confidence 9876532 222 223445556556 888888773
No 25
>PLN03112 cytochrome P450 family protein; Provisional
Probab=100.00 E-value=6.7e-44 Score=304.08 Aligned_cols=183 Identities=22% Similarity=0.364 Sum_probs=159.0
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCccc-ceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~-~~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+|+++||+++++ +. +.++.+++.+|||++|||+|++|++|+++. +.|.+.+|+.++|+.||+
T Consensus 316 l~~~l~~L~~~P~vq~kl~~Ei~~~~~-~~-~~~t~~~l~~L~yl~avi~EtlRl~p~~~~~~~R~~~~d~~i~g~~IPk 393 (514)
T PLN03112 316 NEWAMAEVIKNPRVLRKIQEELDSVVG-RN-RMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTINGYYIPA 393 (514)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHhcC-CC-CcCChhhhccCcHHHHHHHHHhccCCCcccccccccCCCeeEcCEEeCC
Confidence 479999999999999999999999988 43 568999999999999999999999999997 689999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCC-----CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEE
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA-----GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRF 154 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~-----~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~ 154 (189)
|+.|.++.+++|+||++|+||++|+|+||+.+.+. ......++|||.|+|+|+|+++|.+|++++++.|+++|+|
T Consensus 394 Gt~v~~~~~~~h~d~~~~~dP~~F~PeRf~~~~~~~~~~~~~~~~~~~pFg~G~R~C~G~~~A~~e~~~~la~ll~~f~~ 473 (514)
T PLN03112 394 KTRVFINTHGLGRNTKIWDDVEEFRPERHWPAEGSRVEISHGPDFKILPFSAGKRKCPGAPLGVTMVLMALARLFHCFDW 473 (514)
T ss_pred CCEEEEehHHhhCCcccCCChhhcCCcccCCCCCCccccccCCCcceeCCCCCCCCCCcHHHHHHHHHHHHHHHHHheee
Confidence 99999999999999999999999999998754321 1234679999999999999999999999999999999999
Q ss_pred EecCCCC--Cce--ecceEEEeecCCeeEEEEEEcc
Q psy2604 155 EAVSSPD--QVK--CIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 155 ~~~~~~~--~~~--~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
++.++.. +.. ...+.++.+.++ +.+++.+|.
T Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~r~ 508 (514)
T PLN03112 474 SPPDGLRPEDIDTQEVYGMTMPKAKP-LRAVATPRL 508 (514)
T ss_pred ecCCCCCcccCCCccccCcccccCCC-eEEEeecCC
Confidence 9875431 222 223455556668 999999985
No 26
>PLN02936 epsilon-ring hydroxylase
Probab=100.00 E-value=5.2e-43 Score=297.12 Aligned_cols=182 Identities=32% Similarity=0.584 Sum_probs=157.7
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccc-eeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYI-SRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~-~r~~~~~~~i~g~~ip~ 79 (189)
|+|++++|++||++|+++++|++++++ + ..++++++.+||||+|||+||+|++|+++.. +|.+..|+.++|+.||+
T Consensus 298 l~~~l~~L~~~p~~~~kl~~Ei~~~~~-~--~~~~~~~~~~lpyl~avi~EtlRl~p~~~~~~~r~~~~~~~~~g~~Ip~ 374 (489)
T PLN02936 298 LTWTLYLLSKNPEALRKAQEELDRVLQ-G--RPPTYEDIKELKYLTRCINESMRLYPHPPVLIRRAQVEDVLPGGYKVNA 374 (489)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHhc-C--CCCCHHHHhhCHHHHHHHHHhhhcCCCcccccceeccCccccCCeEECC
Confidence 579999999999999999999999988 3 3478999999999999999999999998875 55556777789999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCC---CCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEe
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA---GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEA 156 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~---~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~ 156 (189)
|+.|+++.+++|+||++|+||++|+|+||+.++.. ......++|||.|+|.|+|+++|.+|++++++.|+++|+++.
T Consensus 375 Gt~v~~~~~~~~rd~~~~~dP~~F~PeRwl~~~~~~~~~~~~~~~~pFg~G~R~C~G~~la~~~~~~~la~ll~~f~~~~ 454 (489)
T PLN02936 375 GQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDFRYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLEL 454 (489)
T ss_pred CCEEEecHHhccCChhhCCCccccCccccCCCCCCccccCCCcceeCCCCCCCCCCCHHHHHHHHHHHHHHHHHhCeEEe
Confidence 99999999999999999999999999999964421 122457999999999999999999999999999999999998
Q ss_pred cCCCCCceecceEEEeecCCeeEEEEEEccC
Q psy2604 157 VSSPDQVKCIPYVVLRPLNSELMVRITPRRN 187 (189)
Q Consensus 157 ~~~~~~~~~~~~~~~~p~~~~~~v~~~~R~~ 187 (189)
+++. ......+++..|+++ +.|++++|..
T Consensus 455 ~~~~-~~~~~~~~~~~~~~~-~~v~~~~R~~ 483 (489)
T PLN02936 455 VPDQ-DIVMTTGATIHTTNG-LYMTVSRRRV 483 (489)
T ss_pred cCCC-ccceecceEEeeCCC-eEEEEEeeeC
Confidence 7653 233334567778878 9999998853
No 27
>PLN02987 Cytochrome P450, family 90, subfamily A
Probab=100.00 E-value=7e-43 Score=295.04 Aligned_cols=184 Identities=21% Similarity=0.305 Sum_probs=162.5
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCC-CCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQ-ECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~-~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|+.||++|+++++|++++.+.. ....++.+++.++||++|+++|++|++|+++.+.|.+.+|++++||.||+
T Consensus 287 l~~~l~~L~~~P~~~~~l~~E~~~~~~~~~~~~~~~~~~l~~lpyl~a~i~EtLRl~p~~~~~~R~~~~d~~~~G~~ip~ 366 (472)
T PLN02987 287 MTLAVKFLTETPLALAQLKEEHEKIRAMKSDSYSLEWSDYKSMPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPK 366 (472)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHcccCCCCCCCHHHHhcChHHHHHHHHHHHccCCcCCccccCCCCeeECCEEECC
Confidence 57999999999999999999999997521 12457899999999999999999999999988889999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecCC
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSS 159 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 159 (189)
|+.|.++.+++|+||++|+||++|+|+||++..........++|||.|+|.|+|+++|.+|++++++.|+++|++++.++
T Consensus 367 Gt~v~~~~~~~~~d~~~~~~p~~F~PeRfl~~~~~~~~~~~~l~FG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~~ 446 (472)
T PLN02987 367 GWKVFASFRAVHLDHEYFKDARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRFSWVPAEQ 446 (472)
T ss_pred CCEEEEehHHhhCCcccCCCccccCcccCCCCCCCCCCCcceECCCCCCcCCCcHHHHHHHHHHHHHHHHhceEEEECCC
Confidence 99999999999999999999999999999975443334567999999999999999999999999999999999998765
Q ss_pred CCCceecceEEEeecCCeeEEEEEEccCC
Q psy2604 160 PDQVKCIPYVVLRPLNSELMVRITPRRNA 188 (189)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~v~~~~R~~~ 188 (189)
. +... ..++.|.++ +.+++++|.-+
T Consensus 447 ~-~~~~--~~~~~p~~~-~~~~~~~r~~~ 471 (472)
T PLN02987 447 D-KLVF--FPTTRTQKR-YPINVKRRDVA 471 (472)
T ss_pred C-ceee--cccccCCCC-ceEEEEecccC
Confidence 3 3332 448889888 99999999654
No 28
>PLN02302 ent-kaurenoic acid oxidase
Probab=100.00 E-value=6.6e-43 Score=296.10 Aligned_cols=181 Identities=28% Similarity=0.429 Sum_probs=158.9
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCC--CCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQE--CKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIP 78 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~--~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip 78 (189)
++|++++|++||++|+|+++|++++.+... ...++.+++.++||++|+|+|++|++|+++...|.+.+|++++|+.||
T Consensus 307 l~~~l~~L~~~P~~~~kl~~E~~~v~~~~~~~~~~~~~~~l~~lpyl~a~i~E~lRl~p~~~~~~R~~~~d~~~~g~~Ip 386 (490)
T PLN02302 307 TMWATIFLQEHPEVLQKAKAEQEEIAKKRPPGQKGLTLKDVRKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIP 386 (490)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHhcChHHHHHHHHHHHhCCCcccchhcccCCEeECCEEEC
Confidence 479999999999999999999999986211 123789999999999999999999999999888999999999999999
Q ss_pred CCCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecC
Q psy2604 79 AQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVS 158 (189)
Q Consensus 79 ~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~ 158 (189)
+|+.|.++.+++|+|+++|+||++|+|+||++.. .....++|||.|+|.|+|+++|.+|++++++.|+++|++++.+
T Consensus 387 ~Gt~v~~~~~~~~rd~~~~~dP~~F~PeR~~~~~---~~~~~~~pFG~G~r~C~G~~lA~~e~~~~la~ll~~f~~~~~~ 463 (490)
T PLN02302 387 KGWKVLAWFRQVHMDPEVYPNPKEFDPSRWDNYT---PKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLN 463 (490)
T ss_pred CCCEEEeeHHHhcCCcccCCCccccChhhcCCCC---CCCCCccCCCCCCcCCCcHHHHHHHHHHHHHHHHhcCeeEEcC
Confidence 9999999999999999999999999999999643 2456789999999999999999999999999999999999876
Q ss_pred CCCCceecceEEEeecCCeeEEEEEEccC
Q psy2604 159 SPDQVKCIPYVVLRPLNSELMVRITPRRN 187 (189)
Q Consensus 159 ~~~~~~~~~~~~~~p~~~~~~v~~~~R~~ 187 (189)
+..... ...+..|.++ +.+++++|..
T Consensus 464 ~~~~~~--~~~~~~p~~~-~~~~~~~~~~ 489 (490)
T PLN02302 464 PGCKVM--YLPHPRPKDN-CLARITKVAS 489 (490)
T ss_pred CCCcce--eCCCCCCCCC-ceEEEEeccC
Confidence 532222 2234788888 9999998854
No 29
>PLN02196 abscisic acid 8'-hydroxylase
Probab=100.00 E-value=6.1e-43 Score=294.89 Aligned_cols=178 Identities=25% Similarity=0.388 Sum_probs=157.9
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCC-CCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQE-CKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPA 79 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~-~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~ 79 (189)
++|++++|++||++|+|+++|++++.+... ...++.+++.++||++|+|+|++|++|++++..|.+.+|+.++||.||+
T Consensus 284 l~~~l~~L~~~P~vq~kl~~Ei~~~~~~~~~~~~~~~~~~~~l~yl~avi~EtlRl~p~~~~~~R~~~~d~~i~g~~Ipk 363 (463)
T PLN02196 284 LTWILKYLAENPSVLEAVTEEQMAIRKDKEEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPK 363 (463)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHhcccccCCCCCHHHHhcChHHHHHHHHHHhcCCCccccceeeccccccCCEEeCC
Confidence 479999999999999999999999986321 3568999999999999999999999999999889999999999999999
Q ss_pred CCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecCC
Q psy2604 80 QSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSS 159 (189)
Q Consensus 80 g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~ 159 (189)
|+.|.++.+++|+|+++|+||++|+||||++.. .+..++|||.|+|.|+|+++|++|++++++.|+++|++++.++
T Consensus 364 Gt~v~~~~~~~~rd~~~~~dP~~F~PeRfl~~~----~~~~~lpFG~G~r~C~G~~~A~~e~~~~la~ll~~f~~~~~~~ 439 (463)
T PLN02196 364 GWKVLPLFRNIHHSADIFSDPGKFDPSRFEVAP----KPNTFMPFGNGTHSCPGNELAKLEISVLIHHLTTKYRWSIVGT 439 (463)
T ss_pred CCEEEeeHHHhcCCchhcCCcCccChhhhcCCC----CCCcccCcCCCCCCCchHHHHHHHHHHHHHHHHHhcEEEEcCC
Confidence 999999999999999999999999999999632 3568999999999999999999999999999999999998765
Q ss_pred CCCceecceEEEeecCCeeEEEEEEc
Q psy2604 160 PDQVKCIPYVVLRPLNSELMVRITPR 185 (189)
Q Consensus 160 ~~~~~~~~~~~~~p~~~~~~v~~~~R 185 (189)
+.+. ....+..|+++ +.|++++.
T Consensus 440 ~~~~--~~~~~~~p~~~-~~~~~~~~ 462 (463)
T PLN02196 440 SNGI--QYGPFALPQNG-LPIALSRK 462 (463)
T ss_pred CCce--EEcccccCCCC-ceEEEecC
Confidence 4333 33445679988 99998764
No 30
>KOG0684|consensus
Probab=100.00 E-value=6.1e-43 Score=283.16 Aligned_cols=183 Identities=31% Similarity=0.581 Sum_probs=164.5
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCC----EE
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGE----YT 76 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g----~~ 76 (189)
++|++++|++||++++.+++|+.+++| ++...++.+.++++|+|++||+||+||+||.+++.|.+.+|.++.+ |.
T Consensus 293 sfW~l~yLl~~Pe~~~a~~eE~k~vlG-~~~~~l~~d~L~~lplL~~~IkEtLRL~~p~~~~~R~v~~D~tv~~~~~~Y~ 371 (486)
T KOG0684|consen 293 SFWTLAYLLRHPEAQKAVREEQKRVLG-EKKEKLTYDQLKDLPLLDSCIKETLRLHPPAHSLMRKVHEDLTVPGSDGEYV 371 (486)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHhh-ccCCCCCHHHHhcchHHHHHHHHHHhcCCchhhHHHhhccceeeccCCccee
Confidence 379999999999999999999999999 6546699999999999999999999999999999999999999965 99
Q ss_pred eCCCCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCC---CC--CcccccCCCCCCCcccHHHHHHHHHHHHHHHhhc
Q psy2604 77 IPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAG---RH--PFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRK 151 (189)
Q Consensus 77 ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~---~~--~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~ 151 (189)
||+|..|.++...+|+||++|++|++|+|+||++++++. .. +..++|||+|.|.|||+.||.+|++.++..+|++
T Consensus 372 Ip~G~~valsP~~~hr~peif~dp~~Fk~dRf~~~~~~~~k~g~kl~yy~mpfGaGr~~CpGr~FA~~eIk~~~~l~L~~ 451 (486)
T KOG0684|consen 372 IPKGDIVALSPFLLHRDPEIFPDPEDFKPDRFLKDNGESKKNGEKLDYYYMPFGAGRHRCPGRSFAYLEIKQFISLLLRH 451 (486)
T ss_pred cCCCCEEEeccccccCCccccCChhhCChhhccCCCcccccccccccccccccCCCcCCCCchHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999877655 22 3346999999999999999999999999999999
Q ss_pred cEEEecCCC-CCceecceEEEeecCCeeEEEEEEcc
Q psy2604 152 FRFEAVSSP-DQVKCIPYVVLRPLNSELMVRITPRR 186 (189)
Q Consensus 152 f~~~~~~~~-~~~~~~~~~~~~p~~~~~~v~~~~R~ 186 (189)
||++..+++ +.++.. ..++.|.++ +.|+.++|.
T Consensus 452 fdleLid~~~P~~d~s-~~v~~P~g~-v~irYK~R~ 485 (486)
T KOG0684|consen 452 FDLELIDGPFPEVDYS-RMVMQPEGD-VRIRYKRRP 485 (486)
T ss_pred cceeecCCCCCCCCHH-HhhcCCCCC-ceEEEeecC
Confidence 999999953 334433 348889988 999999985
No 31
>PLN02648 allene oxide synthase
Probab=100.00 E-value=1.8e-37 Score=261.93 Aligned_cols=159 Identities=21% Similarity=0.403 Sum_probs=139.1
Q ss_pred ChHHHHHHhhChH-HHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeC----CE
Q psy2604 1 MVPGTYLKTSLFS-FQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLG----EY 75 (189)
Q Consensus 1 ~~~~~~~l~~~p~-~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~----g~ 75 (189)
++|++++|+.||+ +|++|++||+++++ ...+.++.+++.+|||+++||+|++|++|++++..|.+.+|++++ ||
T Consensus 292 l~~~l~~L~~~p~~v~~klr~Ei~~~~~-~~~~~~t~~~l~~l~yl~avi~EtLRl~p~v~~~~r~a~~d~~l~~~~~g~ 370 (480)
T PLN02648 292 FPALLKWVGRAGEELQARLAEEVRSAVK-AGGGGVTFAALEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAF 370 (480)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHhc-cCCCCCCHHHHhcCHHHHHHHHHHHhhcCCcccccceecCCEEEecCCceE
Confidence 4689999999995 99999999999986 323568999999999999999999999999999888899999995 79
Q ss_pred EeCCCCEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccC---------CCCCCCcccHHHHHHHHHHHHH
Q psy2604 76 TIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPF---------SAGPRNCIGQRFAMMEEKVILT 146 (189)
Q Consensus 76 ~ip~g~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~F---------g~G~r~C~G~~~A~~~~~~~l~ 146 (189)
.||+|+.|+++.+.+|+||++|+||++|+|+||++++... ...+++| |+|+|.|+|+++|.+|++++++
T Consensus 371 ~IpkG~~V~~~~~~~hrdp~~~~dP~~F~PeRf~~~~~~~--~~~~~~f~~g~~~~~~G~G~R~C~G~~~A~~e~~~~la 448 (480)
T PLN02648 371 EIKKGEMLFGYQPLVTRDPKVFDRPEEFVPDRFMGEEGEK--LLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFVA 448 (480)
T ss_pred EECCCCEEEEChHHHhCCcccCCCcceeCCCCCCCCCccc--cccccccCCCcccCCCCCCCccCccHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998653321 1233444 6778999999999999999999
Q ss_pred HHhhccE-EEecCCCCC
Q psy2604 147 QLLRKFR-FEAVSSPDQ 162 (189)
Q Consensus 147 ~ll~~f~-~~~~~~~~~ 162 (189)
.|+++|+ |++.++...
T Consensus 449 ~Ll~~f~~~~l~~~~~~ 465 (480)
T PLN02648 449 ELFLRYDSFEIEVDTSG 465 (480)
T ss_pred HHHHHhCEEeecCCccc
Confidence 9999998 998766443
No 32
>COG2124 CypX Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=3.1e-35 Score=244.63 Aligned_cols=155 Identities=34% Similarity=0.569 Sum_probs=136.9
Q ss_pred ChHHHHHHhhChHHHHHHHHHHHHHhCCCCCCCCCHHHhccChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCCC
Q psy2604 1 MVPGTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQ 80 (189)
Q Consensus 1 ~~~~~~~l~~~p~~~~~l~~Ei~~~~~~~~~~~~~~~~~~~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g 80 (189)
|+|+++.|++||+.++++++|.+. ||+.++++|++|++|+++...|.+.+|++++|+.||+|
T Consensus 256 l~~a~~~L~~~P~~~~~l~~e~~~------------------~~~~~~v~E~LR~~ppv~~~~R~~~~d~~igg~~Ip~G 317 (411)
T COG2124 256 LAWALYALLRHPDQLAKLRAEPDR------------------PLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAG 317 (411)
T ss_pred HHHHHHHHHHCchHHHHHHhCcch------------------HHHHHHHHHHHHhCCchhccceeccCCEeeCCEEeCCC
Confidence 589999999999999999987653 89999999999999999998899999999999999999
Q ss_pred CEEEEeeeccccCCCCCCCCCCcCCCCCCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHHHHhhccEEEecCCC
Q psy2604 81 SNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSP 160 (189)
Q Consensus 81 ~~v~~~~~~~~~d~~~~~~p~~f~p~R~~~~~~~~~~~~~~~~Fg~G~r~C~G~~~A~~~~~~~l~~ll~~f~~~~~~~~ 160 (189)
+.|.++++++||||++|++|++|||+||. ..+++||+|+|.|+|..||++|++++++.++++|++....+
T Consensus 318 ~~V~~~~~~anrDp~~f~~P~~F~p~R~~---------~~~l~FG~G~H~ClG~~lA~~E~~~~l~~ll~r~~~~~~~~- 387 (411)
T COG2124 318 TVVLLSIGAANRDPEVFPDPDEFDPERFN---------NAHLPFGGGPHRCLGAALARLELKVALAELLRRFPLLLLAE- 387 (411)
T ss_pred CEEEecHhhhcCChhhCCChhhcCCCCCC---------CCCcCCCCCCccccCHHHHHHHHHHHHHHHHHhCchhhcCC-
Confidence 99999999999999999999999999996 56899999999999999999999999999999999987766
Q ss_pred CCceecceEEEeecCCeeEEEEEEc
Q psy2604 161 DQVKCIPYVVLRPLNSELMVRITPR 185 (189)
Q Consensus 161 ~~~~~~~~~~~~p~~~~~~v~~~~R 185 (189)
. .......+..+.++ ..+.++.+
T Consensus 388 ~-~~~~~~~~~~~~g~-~~l~v~~~ 410 (411)
T COG2124 388 P-PPLVRRPTLVPRGG-ERLPVRRR 410 (411)
T ss_pred C-CCccccccccCCCc-ceeeeecC
Confidence 2 22333445566655 66666554
No 33
>PF12508 DUF3714: Protein of unknown function (DUF3714) ; InterPro: IPR022187 Proteins in this entry are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=73.83 E-value=1.6 Score=33.06 Aligned_cols=44 Identities=14% Similarity=0.168 Sum_probs=31.7
Q ss_pred cChhHHHHHhhhcCCCCCcccceeeeccceEeCCEEeCCCCEEEE
Q psy2604 41 KMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGI 85 (189)
Q Consensus 41 ~lp~l~a~i~E~lRl~p~~~~~~r~~~~~~~i~g~~ip~g~~v~~ 85 (189)
.-....|||.|+.-+. ....+.=+..+|+.++|..||+|+.+.-
T Consensus 51 ~~n~I~A~V~~~qtv~-~Gs~vrlRLle~i~i~g~~IPkgt~l~G 94 (200)
T PF12508_consen 51 EKNTIRAVVDGTQTVV-DGSRVRLRLLEDIQIGGILIPKGTYLYG 94 (200)
T ss_pred CCCeEEEEEecceEEe-CCCEEEEEEcCceEECCEEeCCCCEEEE
Confidence 3456778888887664 2223444677899999999999997644
No 34
>PF05952 ComX: Bacillus competence pheromone ComX; InterPro: IPR009233 Competence is the ability of a cell to take up exogenous DNA from its environment, resulting in transformation. It is widespread among bacteria and is probably an important mechanism for the horizontal transfer of genes. Cells that take up DNA inevitably acquire the nucleotides the DNA consists of, and, because nucleotides are needed for DNA and RNA synthesis and are expensive to synthesise, these may make a significant contribution to the cell's energy budget []. The lateral gene transfer caused by competence also contributes to the genetic diversity that makes evolution possible. DNA usually becomes available by the death and lysis of other cells. Competent bacteria use components of extracellular filaments called type 4 pili to create pores in their membranes and pull DNA through the pores into the cytoplasm. This process, including the development of competence and the expression of the uptake machinery, is regulated in response to cell-cell signalling and/or nutritional conditions []. Natural genetic competence in Bacillus subtilis is controlled by quorum-sensing (QS). The ComP- ComA two-component system detects the signalling molecule ComX, and this signal is transduced by a conserved phosphotransfer mechanism. ComX is synthesised as an inactive precursor and is then cleaved and modified by ComQ before export to the extracellular environment [].
Probab=50.99 E-value=17 Score=21.60 Aligned_cols=19 Identities=5% Similarity=-0.190 Sum_probs=16.1
Q ss_pred HHHHHHhhChHHHHHHHHH
Q psy2604 3 PGTYLKTSLFSFQDKVVSE 21 (189)
Q Consensus 3 ~~~~~l~~~p~~~~~l~~E 21 (189)
-.+.+|.+||++.+++.+.
T Consensus 4 ~iV~YLv~nPevl~kl~~g 22 (57)
T PF05952_consen 4 EIVNYLVQNPEVLEKLKEG 22 (57)
T ss_pred HHHHHHHHChHHHHHHHcC
Confidence 3577999999999999964
No 35
>TIGR03779 Bac_Flav_CT_M Bacteroides conjugative transposon TraM protein. Members of this protein family are designated TraM and are found in a proposed transfer region of a class of conjugative transposon found in the Bacteroides lineage.
Probab=50.10 E-value=7.9 Score=32.64 Aligned_cols=21 Identities=19% Similarity=0.221 Sum_probs=16.4
Q ss_pred eeccceEeCCEEeCCCCEEEE
Q psy2604 65 WLEQDLVLGEYTIPAQSNIGI 85 (189)
Q Consensus 65 ~~~~~~~i~g~~ip~g~~v~~ 85 (189)
+..+|+.++|..||+||.|.-
T Consensus 277 RLle~~~v~~~~ipkgt~l~g 297 (410)
T TIGR03779 277 RLLEPIQAGDLVIPKGTVLYG 297 (410)
T ss_pred EEcCceeeCCEEecCCCEEEE
Confidence 455678889999999997643
No 36
>PRK06789 flagellar motor switch protein; Validated
Probab=46.97 E-value=29 Score=21.85 Aligned_cols=39 Identities=13% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHhhhcCCCCCccc-ceeeeccc--eEeCCEEeCCCCEEEEe
Q psy2604 48 VLKESLRLYPSVPY-ISRWLEQD--LVLGEYTIPAQSNIGIM 86 (189)
Q Consensus 48 ~i~E~lRl~p~~~~-~~r~~~~~--~~i~g~~ip~g~~v~~~ 86 (189)
-++|.+.+.+..-. +-+.+.+. +.++|..|.+|..|.++
T Consensus 21 ~i~dll~L~~Gsvi~Ldk~~~epvdI~vNg~lia~GEvVvv~ 62 (74)
T PRK06789 21 KIEDLLHITKGTLYRLENSTKNTVRLMLENEEIGTGKILTKN 62 (74)
T ss_pred EHHHHhcCCCCCEEEeCCcCCCCEEEEECCEEEeEEeEEEEC
Confidence 46788888865544 56666664 55699999999998775
No 37
>PF08492 SRP72: SRP72 RNA-binding domain; InterPro: IPR013699 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the RNA binding domain of the SRP72 subunit. This domain is responsible for the binding of SRP72 to the 7S SRP RNA []. ; GO: 0008312 7S RNA binding, 0006614 SRP-dependent cotranslational protein targeting to membrane, 0048500 signal recognition particle
Probab=43.23 E-value=18 Score=21.63 Aligned_cols=7 Identities=57% Similarity=1.023 Sum_probs=5.4
Q ss_pred CCCCCCC
Q psy2604 104 DPERFSK 110 (189)
Q Consensus 104 ~p~R~~~ 110 (189)
||||||.
T Consensus 44 DPERWLP 50 (59)
T PF08492_consen 44 DPERWLP 50 (59)
T ss_pred CccccCc
Confidence 6788875
No 38
>PF09201 SRX: SRX; InterPro: IPR015284 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. This entry represents a homologue of the alpha subunit of the SR receptor. Members of this entry consist of a central six-stranded anti-parallel beta-sheet sandwiched by helix alpha1 on one side and helices alpha2-alpha4 on the other. They interact with the small GTPase SR-beta, forming a complex that matches a class of small G protein-effector complexes, including Rap-Raf, Ras-PI3K(gamma), Ras-RalGDS, and Arl2-PDE(delta) []. ; PDB: 1NRJ_A.
Probab=41.17 E-value=26 Score=24.88 Aligned_cols=22 Identities=23% Similarity=0.720 Sum_probs=16.4
Q ss_pred CcccHHHHHHHHHHHHHHHhhc
Q psy2604 130 NCIGQRFAMMEEKVILTQLLRK 151 (189)
Q Consensus 130 ~C~G~~~A~~~~~~~l~~ll~~ 151 (189)
.|.|+.||...+-.++.+|+..
T Consensus 19 N~~gKKFsE~QiN~FIs~lIts 40 (148)
T PF09201_consen 19 NCLGKKFSETQINAFISHLITS 40 (148)
T ss_dssp ETTS----HHHHHHHHHHHHHS
T ss_pred cccchHHHHHHHHHHHHHHhcC
Confidence 6999999999999999999874
No 39
>PF11138 DUF2911: Protein of unknown function (DUF2911); InterPro: IPR021314 This bacterial family of proteins has no known function.
Probab=40.25 E-value=68 Score=23.00 Aligned_cols=34 Identities=9% Similarity=0.217 Sum_probs=23.3
Q ss_pred eccceEeCCEEeCCCCEEEEeee-------ccccCCCCCCC
Q psy2604 66 LEQDLVLGEYTIPAQSNIGIMSY-------LMHRSPELYPD 99 (189)
Q Consensus 66 ~~~~~~i~g~~ip~g~~v~~~~~-------~~~~d~~~~~~ 99 (189)
..+|+.|+|..||+|+.-+.... .+|++...|..
T Consensus 52 f~~dv~igGk~l~AG~Ysl~tiP~~~~WtvI~n~~~~~wG~ 92 (145)
T PF11138_consen 52 FSKDVTIGGKKLKAGTYSLFTIPGEDEWTVIFNKDTDQWGA 92 (145)
T ss_pred ECCCeEECCEEcCCeeEEEEEecCCCeEEEEEECCCCccCc
Confidence 46789999999999997655432 33555555543
No 40
>PF07849 DUF1641: Protein of unknown function (DUF1641); InterPro: IPR012440 Archaeal and bacterial hypothetical proteins are found in this family, with the region in question being approximately 40 residues long.
Probab=37.35 E-value=44 Score=18.37 Aligned_cols=18 Identities=11% Similarity=-0.149 Sum_probs=14.7
Q ss_pred hHHHHHHhhChHHHHHHH
Q psy2604 2 VPGTYLKTSLFSFQDKVV 19 (189)
Q Consensus 2 ~~~~~~l~~~p~~~~~l~ 19 (189)
.|.+..++++||+|.-|.
T Consensus 13 l~gl~~~l~DpdvqrgL~ 30 (42)
T PF07849_consen 13 LFGLLRALRDPDVQRGLG 30 (42)
T ss_pred HHHHHHHHcCHHHHHHHH
Confidence 367888999999988765
No 41
>KOG3506|consensus
Probab=37.04 E-value=17 Score=21.37 Aligned_cols=11 Identities=36% Similarity=0.785 Sum_probs=9.2
Q ss_pred ccCCCCCCCcc
Q psy2604 122 IPFSAGPRNCI 132 (189)
Q Consensus 122 ~~Fg~G~r~C~ 132 (189)
-+||.|.|.|-
T Consensus 12 ~kfg~GsrsC~ 22 (56)
T KOG3506|consen 12 RKFGQGSRSCR 22 (56)
T ss_pred cccCCCCccee
Confidence 46999999985
No 42
>PF12444 Sox_N: Sox developmental protein N terminal ; InterPro: IPR022151 This domain family is found in eukaryotes, and is typically between 69 and 88 amino acids in length. The family is found in association with PF00505 from PFAM. There are two conserved sequence motifs: YDW and PVR. This family contains Sox8, Sox9 and Sox10 proteins which have structural similarity. Sox proteins are involved in developmental processes.
Probab=32.68 E-value=33 Score=22.15 Aligned_cols=21 Identities=14% Similarity=0.284 Sum_probs=17.4
Q ss_pred HHHHHHHHHHhhccEEEecCC
Q psy2604 139 MEEKVILTQLLRKFRFEAVSS 159 (189)
Q Consensus 139 ~~~~~~l~~ll~~f~~~~~~~ 159 (189)
.-|+-++.++|+-|||+++.-
T Consensus 60 ~~IrdAVsqVLkGYDWtLVPm 80 (84)
T PF12444_consen 60 VCIRDAVSQVLKGYDWTLVPM 80 (84)
T ss_pred HHHHHHHHHHhccCCceeeec
Confidence 346788999999999998764
No 43
>PF14824 Sirohm_synth_M: Sirohaem biosynthesis protein central; PDB: 1KYQ_B.
Probab=31.63 E-value=69 Score=16.36 Aligned_cols=16 Identities=19% Similarity=0.214 Sum_probs=12.4
Q ss_pred ChHHHHHHHHHHHHHh
Q psy2604 11 LFSFQDKVVSEIEDIF 26 (189)
Q Consensus 11 ~p~~~~~l~~Ei~~~~ 26 (189)
-|.+-.++|+||++.+
T Consensus 15 sP~la~~iR~~ie~~l 30 (30)
T PF14824_consen 15 SPRLARLIRKEIERLL 30 (30)
T ss_dssp -HHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhC
Confidence 4788899999998753
No 44
>KOG3302|consensus
Probab=30.56 E-value=44 Score=25.16 Aligned_cols=55 Identities=22% Similarity=0.432 Sum_probs=35.2
Q ss_pred CCcCCCCCCCCCCCC-CCCcccccCCCCCCCccc-----------HHHHHHHHHHHHHHHhhccEEE
Q psy2604 101 EKFDPERFSKENSAG-RHPFAYIPFSAGPRNCIG-----------QRFAMMEEKVILTQLLRKFRFE 155 (189)
Q Consensus 101 ~~f~p~R~~~~~~~~-~~~~~~~~Fg~G~r~C~G-----------~~~A~~~~~~~l~~ll~~f~~~ 155 (189)
.+|+|.||-.--... .+.....-|..|+=.|.| +.+|+..-++....-+.+|.+.
T Consensus 50 ~ey~Pk~~~aVimrir~P~~ta~I~ssGKi~ctgA~se~~ar~aark~aRilqkLgf~~~f~~fki~ 116 (200)
T KOG3302|consen 50 AEYNPKRFAAVIMRIRSPRTTALIFSSGKIVCTGAKSEDSARLAARKYARILQKLGFPVKFRDFKIN 116 (200)
T ss_pred cccCcccccEEEEEEcCCceEEEEecCCcEEEeccCCHHHHHHHHHHHHHHHHHcCCCceehheeeE
Confidence 468999984311111 123455789999999996 3466666666666666777654
No 45
>PF08285 DPM3: Dolichol-phosphate mannosyltransferase subunit 3 (DPM3); InterPro: IPR013174 This family corresponds to subunit 3 of dolichol-phosphate mannosyltransferase, an enzyme which generates mannosyl donors for glycosylphosphatidylinositols, N-glycan and protein O- and C-mannosylation. DPM3 is an integral membrane protein and plays a role in stabilising the dolichol-phosphate mannosyl transferase complex [].
Probab=28.70 E-value=50 Score=21.62 Aligned_cols=25 Identities=12% Similarity=-0.047 Sum_probs=20.1
Q ss_pred hHHHHHHhhChHHHHHHHHHHHHHh
Q psy2604 2 VPGTYLKTSLFSFQDKVVSEIEDIF 26 (189)
Q Consensus 2 ~~~~~~l~~~p~~~~~l~~Ei~~~~ 26 (189)
.|.++..-..|+..+.|.+||+++-
T Consensus 57 gy~v~tFnDcpeA~~eL~~eI~eAK 81 (91)
T PF08285_consen 57 GYGVATFNDCPEAAKELQKEIKEAK 81 (91)
T ss_pred HHhhhccCCCHHHHHHHHHHHHHHH
Confidence 4566666778999999999999874
No 46
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=28.25 E-value=20 Score=26.55 Aligned_cols=35 Identities=23% Similarity=0.432 Sum_probs=24.1
Q ss_pred CCcCCCCCCCCCC-CCCCCcccccCCCCCCCcccHH
Q psy2604 101 EKFDPERFSKENS-AGRHPFAYIPFSAGPRNCIGQR 135 (189)
Q Consensus 101 ~~f~p~R~~~~~~-~~~~~~~~~~Fg~G~r~C~G~~ 135 (189)
.+|||++|-.--- -..++...+-|..|+-.|-|..
T Consensus 35 aeYnP~qFpGlv~Rl~ePk~a~LIF~SGK~VcTGaK 70 (185)
T COG2101 35 AEYNPEQFPGLVYRLEEPKTAALIFRSGKVVCTGAK 70 (185)
T ss_pred CccCHhHCCeeEEEecCCcceEEEEecCcEEEeccC
Confidence 4689999832100 1124567899999999999964
No 47
>PF11227 DUF3025: Protein of unknown function (DUF3025); InterPro: IPR021390 Some members in this bacterial family of proteins are annotated as transmembrane proteins however this cannot be confirmed. Currently this family of proteins has no known function.
Probab=25.90 E-value=43 Score=25.63 Aligned_cols=24 Identities=33% Similarity=0.728 Sum_probs=19.2
Q ss_pred EEeeecc-ccCCCCCCCCCCcCCCC
Q psy2604 84 GIMSYLM-HRSPELYPDPEKFDPER 107 (189)
Q Consensus 84 ~~~~~~~-~~d~~~~~~p~~f~p~R 107 (189)
.++-|.- |.|+.+|.|...|+|.|
T Consensus 187 GiPGW~~~n~~~~FY~d~~~FRp~R 211 (212)
T PF11227_consen 187 GIPGWWPDNEDPAFYDDTDVFRPGR 211 (212)
T ss_pred CCCCCCCCCCCcccccCccccCCCC
Confidence 3444444 89999999999999988
No 48
>PF09551 Spore_II_R: Stage II sporulation protein R (spore_II_R); InterPro: IPR014202 This entry is designated stage II sporulation protein R. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species. SpoIIR is a signalling protein that links the activation of sigma E to the transcriptional activity of sigma F during sporulation [, ].
Probab=24.73 E-value=1.9e+02 Score=20.31 Aligned_cols=72 Identities=17% Similarity=0.165 Sum_probs=41.6
Q ss_pred ChHHHHHHHHHHHHHhCCCCCCCCCHHH-----hccChhHHHHHhhhcCCCCCcc----cceeeeccceEeCCEEeCCCC
Q psy2604 11 LFSFQDKVVSEIEDIFGPQECKDIRKEH-----LKKMEYLEKVLKESLRLYPSVP----YISRWLEQDLVLGEYTIPAQS 81 (189)
Q Consensus 11 ~p~~~~~l~~Ei~~~~~~~~~~~~~~~~-----~~~lp~l~a~i~E~lRl~p~~~----~~~r~~~~~~~i~g~~ip~g~ 81 (189)
++.+.-++|++|.+.+...-...-+.++ ..+++-++.+..+.++-...-- .+.+..-..-..+++.+|+|.
T Consensus 18 DQ~lKl~VRD~Vl~~l~~~~~~~~~~~ea~~~i~~~~~~Ie~~A~~~l~~~G~~y~v~v~~~~~~FPtK~YG~~~~PaG~ 97 (130)
T PF09551_consen 18 DQALKLKVRDAVLEYLSPWLSQAKSKEEAREVIRENLPEIEQIAEEVLAEEGYDYPVKVELGRFYFPTKTYGDIVLPAGE 97 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHhHHHHHHHHHHHHHHhCCCCcEEEEEEeeeCCCceECCEeccCCc
Confidence 4566677777777776521111222222 3567778888887776543211 123333344566899999998
Q ss_pred E
Q psy2604 82 N 82 (189)
Q Consensus 82 ~ 82 (189)
.
T Consensus 98 Y 98 (130)
T PF09551_consen 98 Y 98 (130)
T ss_pred e
Confidence 5
No 49
>PRK05933 type III secretion system protein; Validated
Probab=22.74 E-value=1.1e+02 Score=25.25 Aligned_cols=42 Identities=17% Similarity=0.139 Sum_probs=31.5
Q ss_pred HHHHHhhhcCCCCCccc-ceeee-cc--ceEeCCEEeCCCCEEEEe
Q psy2604 45 LEKVLKESLRLYPSVPY-ISRWL-EQ--DLVLGEYTIPAQSNIGIM 86 (189)
Q Consensus 45 l~a~i~E~lRl~p~~~~-~~r~~-~~--~~~i~g~~ip~g~~v~~~ 86 (189)
.+.-|+|.++|.+.... +-+.+ .+ |+.++|..|.+|..|.++
T Consensus 317 T~l~IkELL~L~~GSVIeLDk~a~GEpVDI~VNGrLIARGEVVVVd 362 (372)
T PRK05933 317 YSLSVGEFLKLGPGSILQFDGVHPTLGVDIILNGAKVGRGEIIALG 362 (372)
T ss_pred ccccHHHHhccCCCCEEEeCCcCCCCCEEEEECCEEEeeeeEEEEC
Confidence 45679999999876544 44443 33 677799999999999875
No 50
>PF02663 FmdE: FmdE, Molybdenum formylmethanofuran dehydrogenase operon ; InterPro: IPR003814 Formylmethanofuran dehydrogenases (1.2.99.5 from EC) is found in methanogenic and sulphate-reducing archaea. The enzyme contains molybdenum or tungsten, a molybdopterin guanine dinuceotide cofactor (MGD) and iron-sulphur clusters []. It catalyses the reversible reduction of CO2 and methanofuran via N-carboxymethanofuran (carbamate) to N-formylmethanofuran, the first and second steps in methanogenesis from CO2 [, ]. This reaction is important for the reduction of CO2 to methane, in autotrophic CO2 fixation, and in CO2 formation from reduced C1 units []. The synthesis of formylmethanofuran is crucial for the energy metabolism of archaea. Methanogenic archaea derives the energy for autrophic growth from the reduction of CO2 with molecular hydrogen as the electron donor []. The process of methanogenesis consists of a series of reduction reactions at which the one-carbon unit derived from CO2 is bound to C1 carriers. There are two isoenzymes of formylmethanofuran dehydrogenase: a tungsten-containing isoenzyme (Fwd) and a molybdenum-containing isoenzyme (Fmd). The tungsten isoenzyme is constitutively transcribed, whereas transcription of the molybdenum operon is induced by molybdate []. The archaea Methanobacterium thermoautotrophicum contains a 4-subunit (FwdA, FwdB, FwdC, FwdD) tungsten formylmethanofuran dehydrogenase and a 3-subunit (FmdA, FmdB, FmdC) molybdenum formylmethanofuran dehydrogenase []. This entry represents subunit E of formylmethanofuran dehydrogenase enyzmes. The enzyme from Methanosarcina barkeri is a molybdenum iron-sulphur protein involved in methanogenesis. Subunit E protein is co-expressed with the enzyme but fails to co-purify and thus its function is unknown [].; PDB: 2GVI_A 3D00_A 2GLZ_A.
Probab=22.53 E-value=86 Score=21.67 Aligned_cols=23 Identities=22% Similarity=0.176 Sum_probs=17.8
Q ss_pred CCCcccHHHHHHHHHHHHHHHhh
Q psy2604 128 PRNCIGQRFAMMEEKVILTQLLR 150 (189)
Q Consensus 128 ~r~C~G~~~A~~~~~~~l~~ll~ 150 (189)
.|.|||.-++......++..|-.
T Consensus 4 GH~Cpgl~~G~r~~~~a~~~l~~ 26 (131)
T PF02663_consen 4 GHLCPGLALGYRMAKYALEELGI 26 (131)
T ss_dssp SS--HHHHHHHHHHHHHHHHHTS
T ss_pred CCcCccHHHHHHHHHHHHHHcCC
Confidence 38999999999999999888743
No 51
>PF14550 Peptidase_U35_2: Putative phage protease XkdF
Probab=21.63 E-value=73 Score=22.12 Aligned_cols=21 Identities=24% Similarity=0.249 Sum_probs=17.1
Q ss_pred eeccceEeCCEEeCCCCEEEE
Q psy2604 65 WLEQDLVLGEYTIPAQSNIGI 85 (189)
Q Consensus 65 ~~~~~~~i~g~~ip~g~~v~~ 85 (189)
++..|..++|-.||+|+.|..
T Consensus 72 I~~~d~~~~g~~i~~GtWv~~ 92 (122)
T PF14550_consen 72 IAPEDMEIGGETIPKGTWVVG 92 (122)
T ss_pred ecCCCcccCCeeecceEEEEE
Confidence 456689999999999998843
Done!