RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2604
(189 letters)
>gnl|CDD|215689 pfam00067, p450, Cytochrome P450. Cytochrome P450s are
haem-thiolate proteins involved in the oxidative
degradation of various compounds. They are particularly
well known for their role in the degradation of
environmental toxins and mutagens. They can be divided
into 4 classes, according to the method by which
electrons from NAD(P)H are delivered to the catalytic
site. Sequence conservation is relatively low within the
family - there are only 3 absolutely conserved residues
- but their general topography and structural fold are
highly conserved. The conserved core is composed of a
coil termed the 'meander', a four-helix bundle, helices
J and K, and two sets of beta-sheets. These constitute
the haem-binding loop (with an absolutely conserved
cysteine that serves as the 5th ligand for the haem
iron), the proton-transfer groove and the absolutely
conserved EXXR motif in helix K. While prokaryotic P450s
are soluble proteins, most eukaryotic P450s are
associated with microsomal membranes. their general
enzymatic function is to catalyze regiospecific and
stereospecific oxidation of non-activated hydrocarbons
at physiological temperatures.
Length = 461
Score = 179 bits (457), Expect = 7e-55
Identities = 62/142 (43%), Positives = 92/142 (64%), Gaps = 3/142 (2%)
Query: 15 QDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLG 73
Q+K+ EI+++ G + + L+ M YL+ V+KE+LRL+P VP + R + +D V+
Sbjct: 295 QEKLREEIDEVIGDKRS--PTYDDLQNMPYLDAVIKETLRLHPVVPLLLPREVTKDTVIP 352
Query: 74 EYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIG 133
Y IP + + + Y +HR PE++P+PE+FDPERF EN R FA++PF AGPRNC+G
Sbjct: 353 GYLIPKGTLVIVNLYALHRDPEVFPNPEEFDPERFLDENGKFRKSFAFLPFGAGPRNCLG 412
Query: 134 QRFAMMEEKVILTQLLRKFRFE 155
+R A ME K+ L LL+ F E
Sbjct: 413 ERLARMEMKLFLATLLQNFEVE 434
>gnl|CDD|225035 COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis,
transport, and catabolism].
Length = 411
Score = 136 bits (345), Expect = 9e-39
Identities = 56/159 (35%), Positives = 83/159 (52%), Gaps = 14/159 (8%)
Query: 28 PQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMS 87
P + +R E LE V++E+LRLYP VP R +D+ LG Y IPA + + +
Sbjct: 267 PDQLAKLRAEP--DRPLLEAVVEETLRLYPPVPLARRVATEDVELGGYRIPAGTVVLLSI 324
Query: 88 YLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQ 147
+R PE++PDP++FDPERF A++PF GP C+G A +E KV L +
Sbjct: 325 GAANRDPEVFPDPDEFDPERF---------NNAHLPFGGGPHRCLGAALARLELKVALAE 375
Query: 148 LLRKFRFEAVSSPDQVKCIPYVVLRPLNSELMVRITPRR 186
LLR+F ++ P + P +V R + + RR
Sbjct: 376 LLRRFPLLLLAEPPPLVRRPTLVPRGG---ERLPVRRRR 411
>gnl|CDD|215164 PLN02290, PLN02290, cytokinin trans-hydroxylase.
Length = 516
Score = 125 bits (316), Expect = 4e-34
Identities = 72/178 (40%), Positives = 101/178 (56%), Gaps = 23/178 (12%)
Query: 13 SFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVL 72
++QDKV +E+ ++ G E + +HL K+ L V+ ESLRLYP + R +D+ L
Sbjct: 348 TWQDKVRAEVAEVCG-GETPSV--DHLSKLTLLNMVINESLRLYPPATLLPRMAFEDIKL 404
Query: 73 GEYTIPAQSNIGIMSYLMHRSPELY-PDPEKFDPERF-SKENSAGRHPFAYIPFSAGPRN 130
G+ IP +I I +H S EL+ D +F+P+RF + + GRH +IPF+AGPRN
Sbjct: 405 GDLHIPKGLSIWIPVLAIHHSEELWGKDANEFNPDRFAGRPFAPGRH---FIPFAAGPRN 461
Query: 131 CIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPYVV------------LRPLNS 176
CIGQ FAMME K+IL L+ KF F +S D + P VV L+PLN
Sbjct: 462 CIGQAFAMMEAKIILAMLISKFSF-TIS--DNYRHAPVVVLTIKPKYGVQVCLKPLNP 516
>gnl|CDD|178524 PLN02936, PLN02936, epsilon-ring hydroxylase.
Length = 489
Score = 117 bits (295), Expect = 3e-31
Identities = 58/163 (35%), Positives = 86/163 (52%), Gaps = 9/163 (5%)
Query: 4 GTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVP-YI 62
YL + K E++ + + E +K+++YL + + ES+RLYP P I
Sbjct: 301 TLYLLSKNPEALRKAQEELDRVLQG---RPPTYEDIKELKYLTRCINESMRLYPHPPVLI 357
Query: 63 SRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHP---F 119
R +D++ G Y + A +I I Y +HRSPE++ E+F PERF + F
Sbjct: 358 RRAQVEDVLPGGYKVNAGQDIMISVYNIHRSPEVWERAEEFVPERFDLDGPVPNETNTDF 417
Query: 120 AYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQ 162
YIPFS GPR C+G +FA++E V L LL++ E V PDQ
Sbjct: 418 RYIPFSGGPRKCVGDQFALLEAIVALAVLLQRLDLELV--PDQ 458
>gnl|CDD|215393 PLN02738, PLN02738, carotene beta-ring hydroxylase.
Length = 633
Score = 104 bits (260), Expect = 3e-26
Identities = 56/132 (42%), Positives = 78/132 (59%), Gaps = 12/132 (9%)
Query: 37 EHLKKMEYLEKVLKESLRLYPSVP-YISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPE 95
E +KK++Y +V+ ESLRLYP P I R LE D +LG Y I +I I + +HRSP+
Sbjct: 444 EDMKKLKYTTRVINESLRLYPQPPVLIRRSLEND-MLGGYPIKRGEDIFISVWNLHRSPK 502
Query: 96 LYPDPEKFDPERFSKENSAGRHP------FAYIPFSAGPRNCIGQRFAMMEEKVILTQLL 149
+ D EKF+PER+ + G +P F+Y+PF GPR C+G FA E V L+
Sbjct: 503 HWDDAEKFNPERWPLD---GPNPNETNQNFSYLPFGGGPRKCVGDMFASFENVVATAMLV 559
Query: 150 RKFRFE-AVSSP 160
R+F F+ A +P
Sbjct: 560 RRFDFQLAPGAP 571
>gnl|CDD|173595 PTZ00404, PTZ00404, cytochrome P450; Provisional.
Length = 482
Score = 92.1 bits (229), Expect = 4e-22
Identities = 45/148 (30%), Positives = 78/148 (52%), Gaps = 14/148 (9%)
Query: 15 QDKVVSEIEDIFGPQECKDIRKEHL---KKMEYLEKVLKESLRLYPSVPY-ISRWLEQDL 70
Q+K +EI+ K L + Y ++KE+LR P P+ + R D+
Sbjct: 317 QEKAYNEIKSTVN-----GRNKVLLSDRQSTPYTVAIIKETLRYKPVSPFGLPRSTSNDI 371
Query: 71 VLG-EYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPR 129
++G + IP + I I Y + R+ + + +PE+FDP RF +S A++PFS GPR
Sbjct: 372 IIGGGHFIPKDAQILINYYSLGRNEKYFENPEQFDPSRFLNPDS----NDAFMPFSIGPR 427
Query: 130 NCIGQRFAMMEEKVILTQLLRKFRFEAV 157
NC+GQ+FA E + + ++ F+ +++
Sbjct: 428 NCVGQQFAQDELYLAFSNIILNFKLKSI 455
>gnl|CDD|215235 PLN02426, PLN02426, cytochrome P450, family 94, subfamily C
protein.
Length = 502
Score = 89.0 bits (221), Expect = 5e-21
Identities = 55/170 (32%), Positives = 84/170 (49%), Gaps = 21/170 (12%)
Query: 9 TSLF---SFQDKVVS----EIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY 61
TS F S +V S E + + GP + + E +K+M YL L ES+RL+P V +
Sbjct: 314 TSFFWLLSKHPEVASAIREEADRVMGPNQ-EAASFEEMKEMHYLHAALYESMRLFPPVQF 372
Query: 62 ISRWLEQDLVLGEYT-IPAQSNIGIMSYLMHRSPELY-PDPEKFDPER------FSKENS 113
S++ +D VL + T + + + Y M R ++ PD +F PER F EN
Sbjct: 373 DSKFAAEDDVLPDGTFVAKGTRVTYHPYAMGRMERIWGPDCLEFKPERWLKNGVFVPEN- 431
Query: 114 AGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQV 163
PF Y F AG R C+G+ A+ME K + ++R+F E V ++
Sbjct: 432 ----PFKYPVFQAGLRVCLGKEMALMEMKSVAVAVVRRFDIEVVGRSNRA 477
>gnl|CDD|215354 PLN02655, PLN02655, ent-kaurene oxidase.
Length = 466
Score = 85.9 bits (213), Expect = 5e-20
Identities = 48/173 (27%), Positives = 85/173 (49%), Gaps = 5/173 (2%)
Query: 15 QDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYI-SRWLEQDLVLG 73
Q+++ EI ++ G + + +E L + YL V E+LR Y VP + R++ +D LG
Sbjct: 296 QERLYREIREVCGD---ERVTEEDLPNLPYLNAVFHETLRKYSPVPLLPPRFVHEDTTLG 352
Query: 74 EYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIG 133
Y IPA + I I Y + + + +PE++DPERF E + + F AG R C G
Sbjct: 353 GYDIPAGTQIAINIYGCNMDKKRWENPEEWDPERFLGEKYESADMYKTMAFGAGKRVCAG 412
Query: 134 QRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPYVVLRPLNSELMVRITPRR 186
AM+ + + +L+++F + ++ + + + L L + PR
Sbjct: 413 SLQAMLIACMAIARLVQEFEWRLREGDEEKEDTVQLTTQKL-HPLHAHLKPRG 464
>gnl|CDD|165828 PLN02183, PLN02183, ferulate 5-hydroxylase.
Length = 516
Score = 83.0 bits (205), Expect = 7e-19
Identities = 47/153 (30%), Positives = 78/153 (50%), Gaps = 9/153 (5%)
Query: 15 QDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGE 74
+V E+ D+ G + + + L+K+ YL+ LKE+LRL+P +P + +D +
Sbjct: 338 LKRVQQELADVVGLN--RRVEESDLEKLTYLKCTLKETLRLHPPIPLLLHETAEDAEVAG 395
Query: 75 YTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA---GRHPFAYIPFSAGPRNC 131
Y IP +S + I ++ + R + DP+ F P RF K G H F +IPF +G R+C
Sbjct: 396 YFIPKRSRVMINAWAIGRDKNSWEDPDTFKPSRFLKPGVPDFKGSH-FEFIPFGSGRRSC 454
Query: 132 IGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVK 164
G + + + + LL F +E PD +K
Sbjct: 455 PGMQLGLYALDLAVAHLLHCFTWEL---PDGMK 484
>gnl|CDD|215221 PLN02394, PLN02394, trans-cinnamate 4-monooxygenase.
Length = 503
Score = 82.5 bits (204), Expect = 1e-18
Identities = 51/154 (33%), Positives = 89/154 (57%), Gaps = 8/154 (5%)
Query: 15 QDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLE-QDLVLG 73
Q K+ E++ + GP + + K+ YL+ V+KE+LRL+ ++P + + +D LG
Sbjct: 327 QKKLRDELDTVLGPGN--QVTEPDTHKLPYLQAVVKETLRLHMAIPLLVPHMNLEDAKLG 384
Query: 74 EYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENS---AGRHPFAYIPFSAGPRN 130
Y IPA+S I + ++ + +PEL+ +PE+F PERF +E + A + F ++PF G R+
Sbjct: 385 GYDIPAESKILVNAWWLANNPELWKNPEEFRPERFLEEEAKVEANGNDFRFLPFGVGRRS 444
Query: 131 CIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVK 164
C G A+ ++L +L++ FE + P Q K
Sbjct: 445 CPGIILALPILGIVLGRLVQN--FELLPPPGQSK 476
>gnl|CDD|215171 PLN02302, PLN02302, ent-kaurenoic acid oxidase.
Length = 490
Score = 81.7 bits (202), Expect = 2e-18
Identities = 46/147 (31%), Positives = 73/147 (49%), Gaps = 6/147 (4%)
Query: 40 KKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPD 99
+KMEYL +V+ E+LRL + R + D+ + YTIP + +H PE+YP+
Sbjct: 348 RKMEYLSQVIDETLRLINISLTVFREAKTDVEVNGYTIPKGWKVLAWFRQVHMDPEVYPN 407
Query: 100 PEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSS 159
P++FDP R+ ++PF G R C G A +E + L L +R E ++
Sbjct: 408 PKEFDPSRWDNY---TPKAGTFLPFGLGSRLCPGNDLAKLEISIFLHHFLLGYRLERLNP 464
Query: 160 PDQVKCIPYVVLRPLNSELMVRITPRR 186
+V +P+ RP ++ L RIT
Sbjct: 465 GCKVMYLPHP--RPKDNCL-ARITKVA 488
>gnl|CDD|177826 PLN02169, PLN02169, fatty acid (omega-1)-hydroxylase/midchain
alkane hydroxylase.
Length = 500
Score = 78.9 bits (194), Expect = 2e-17
Identities = 44/153 (28%), Positives = 88/153 (57%), Gaps = 6/153 (3%)
Query: 37 EHLKKMEYLEKVLKESLRLYPSVPYISRW-LEQDLVLGEYTIPAQSNIGIMSYLMHRSPE 95
E L+K+ YL L ES+RLYP +P+ + + D++ + + A+S I I Y + R
Sbjct: 349 EDLEKLVYLHAALSESMRLYPPLPFNHKAPAKPDVLPSGHKVDAESKIVICIYALGRMRS 408
Query: 96 LY-PDPEKFDPERFSKENSAGRH--PFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKF 152
++ D F PER+ +N RH + ++ F++GPR C+G+ A+++ K++ ++++ +
Sbjct: 409 VWGEDALDFKPERWISDNGGLRHEPSYKFMAFNSGPRTCLGKHLALLQMKIVALEIIKNY 468
Query: 153 RFEAVSSPDQVKCIPYVVLRPLNSELMVRITPR 185
F+ + +++ IP ++LR + L V +T +
Sbjct: 469 DFKVIEG-HKIEAIPSILLR-MKHGLKVTVTKK 499
>gnl|CDD|215627 PLN03195, PLN03195, fatty acid omega-hydroxylase; Provisional.
Length = 516
Score = 76.4 bits (188), Expect = 1e-16
Identities = 45/123 (36%), Positives = 68/123 (55%), Gaps = 3/123 (2%)
Query: 39 LKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYT-IPAQSNIGIMSYLMHRSPELY 97
L K++YL V+ E+LRLYP+VP + + +D VL + T + A + + Y M R +
Sbjct: 368 LGKLQYLHAVITETLRLYPAVPQDPKGILEDDVLPDGTKVKAGGMVTYVPYSMGRMEYNW 427
Query: 98 -PDPEKFDPERFSKENS-AGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFE 155
PD F PER+ K+ PF + F AGPR C+G+ A ++ K+ L L R F+F+
Sbjct: 428 GPDAASFKPERWIKDGVFQNASPFKFTAFQAGPRICLGKDSAYLQMKMALALLCRFFKFQ 487
Query: 156 AVS 158
V
Sbjct: 488 LVP 490
>gnl|CDD|177725 PLN00110, PLN00110, flavonoid 3',5'-hydroxylase (F3'5'H);
Provisional.
Length = 504
Score = 74.5 bits (183), Expect = 6e-16
Identities = 42/119 (35%), Positives = 63/119 (52%), Gaps = 5/119 (4%)
Query: 39 LKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELY 97
L K+ YL+ + KES R +PS P + R Q + Y IP + + + + + R P+++
Sbjct: 345 LPKLPYLQAICKESFRKHPSTPLNLPRVSTQACEVNGYYIPKNTRLSVNIWAIGRDPDVW 404
Query: 98 PDPEKFDPERFSKENSAGRHP----FAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKF 152
+PE+F PERF E +A P F IPF AG R C G R ++ + IL L+ F
Sbjct: 405 ENPEEFRPERFLSEKNAKIDPRGNDFELIPFGAGRRICAGTRMGIVLVEYILGTLVHSF 463
>gnl|CDD|215583 PLN03112, PLN03112, cytochrome P450 family protein; Provisional.
Length = 514
Score = 71.8 bits (176), Expect = 5e-15
Identities = 49/184 (26%), Positives = 85/184 (46%), Gaps = 19/184 (10%)
Query: 15 QDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLG 73
K+ E++ + G + +++ L + YL V++E+ R++P+ P+ I + +
Sbjct: 330 LRKIQEELDSVVGRN--RMVQESDLVHLNYLRCVVRETFRMHPAGPFLIPHESLRATTIN 387
Query: 74 EYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGR----H--PFAYIPFSAG 127
Y IPA++ + I ++ + R+ +++ D E+F PER R H F +PFSAG
Sbjct: 388 GYYIPAKTRVFINTHGLGRNTKIWDDVEEFRPER-HWPAEGSRVEISHGPDFKILPFSAG 446
Query: 128 PRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIP------YVVLRPLNSELMVR 181
R C G A + ++L L R F S PD ++ Y + P L
Sbjct: 447 KRKCPG---APLGVTMVLMALARLFHCFDWSPPDGLRPEDIDTQEVYGMTMPKAKPLRAV 503
Query: 182 ITPR 185
TPR
Sbjct: 504 ATPR 507
>gnl|CDD|177847 PLN02196, PLN02196, abscisic acid 8'-hydroxylase.
Length = 463
Score = 71.9 bits (176), Expect = 5e-15
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 4/140 (2%)
Query: 29 QECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSY 88
+E + + E KKM +V++E+LR+ + + R +D+ Y IP + +
Sbjct: 313 EEGESLTWEDTKKMPLTSRVIQETLRVASILSFTFREAVEDVEYEGYLIPKGWKVLPLFR 372
Query: 89 LMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQL 148
+H S +++ DP KFDP RF P ++PF G +C G A +E V++ L
Sbjct: 373 NIHHSADIFSDPGKFDPSRF----EVAPKPNTFMPFGNGTHSCPGNELAKLEISVLIHHL 428
Query: 149 LRKFRFEAVSSPDQVKCIPY 168
K+R+ V + + ++ P+
Sbjct: 429 TTKYRWSIVGTSNGIQYGPF 448
>gnl|CDD|215276 PLN02500, PLN02500, cytochrome P450 90B1.
Length = 490
Score = 70.3 bits (172), Expect = 2e-14
Identities = 46/168 (27%), Positives = 76/168 (45%), Gaps = 27/168 (16%)
Query: 28 PQECKDIRKEHL-------------------KKMEYLEKVLKESLRLYPSVPYISRWLEQ 68
P+ +++R+EHL KKME+ + V+ E+LRL V ++ R +
Sbjct: 310 PKAVQELREEHLEIARAKKQSGESELNWEDYKKMEFTQCVINETLRLGNVVRFLHRKALK 369
Query: 69 DLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFA-------Y 121
D+ Y IP+ + + +H LY P+ F+P R+ + N+ G + +
Sbjct: 370 DVRYKGYDIPSGWKVLPVIAAVHLDSSLYDQPQLFNPWRWQQNNNRGGSSGSSSATTNNF 429
Query: 122 IPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPYV 169
+PF GPR C G A +E V + L+ F +E DQ P+V
Sbjct: 430 MPFGGGPRLCAGSELAKLEMAVFIHHLVLNFNWELA-EADQAFAFPFV 476
>gnl|CDD|178550 PLN02966, PLN02966, cytochrome P450 83A1.
Length = 502
Score = 68.2 bits (166), Expect = 1e-13
Identities = 42/142 (29%), Positives = 71/142 (50%), Gaps = 3/142 (2%)
Query: 17 KVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVP-YISRWLEQDLVLGEY 75
K +E+ + + + ++ +K + Y ++KE+LR+ P +P I R QD + Y
Sbjct: 325 KAQAEVREYMKEKGSTFVTEDDVKNLPYFRALVKETLRIEPVIPLLIPRACIQDTKIAGY 384
Query: 76 TIPAQSNIGIMSYLMHR-SPELYPDPEKFDPERF-SKENSAGRHPFAYIPFSAGPRNCIG 133
IPA + + + ++ + R E P+P++F PERF KE + +IPF +G R C G
Sbjct: 385 DIPAGTTVNVNAWAVSRDEKEWGPNPDEFRPERFLEKEVDFKGTDYEFIPFGSGRRMCPG 444
Query: 134 QRFAMMEEKVILTQLLRKFRFE 155
R +V LL F F+
Sbjct: 445 MRLGAAMLEVPYANLLLNFNFK 466
>gnl|CDD|178592 PLN03018, PLN03018, homomethionine N-hydroxylase.
Length = 534
Score = 67.3 bits (164), Expect = 2e-13
Identities = 37/146 (25%), Positives = 75/146 (51%), Gaps = 9/146 (6%)
Query: 17 KVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYI-SRWLEQDLVLGEY 75
K + E++++ G +++ + + YL+ +E+ R++PS Y+ QD LG Y
Sbjct: 350 KALKELDEVVGKDRL--VQESDIPNLNYLKACCRETFRIHPSAHYVPPHVARQDTTLGGY 407
Query: 76 TIPAQSNIGIMSYLMHRSPELYPDPEKFDPER------FSKENSAGRHPFAYIPFSAGPR 129
IP S+I + + R+P+++ DP ++PER +KE + ++ FS G R
Sbjct: 408 FIPKGSHIHVCRPGLGRNPKIWKDPLVYEPERHLQGDGITKEVTLVETEMRFVSFSTGRR 467
Query: 130 NCIGQRFAMMEEKVILTQLLRKFRFE 155
C+G + + ++L + L+ F ++
Sbjct: 468 GCVGVKVGTIMMVMMLARFLQGFNWK 493
>gnl|CDD|215371 PLN02687, PLN02687, flavonoid 3'-monooxygenase.
Length = 517
Score = 63.7 bits (155), Expect = 3e-12
Identities = 36/104 (34%), Positives = 54/104 (51%), Gaps = 12/104 (11%)
Query: 39 LKKMEYLEKVLKESLRLYPSVPY-ISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELY 97
L ++ YL+ V+KE+ RL+PS P + R ++ + Y IP + + + + + R PE +
Sbjct: 353 LPQLTYLQAVIKETFRLHPSTPLSLPRMAAEECEINGYHIPKGATLLVNVWAIARDPEQW 412
Query: 98 PDPEKFDPERFSKENSAGRHP--------FAYIPFSAGPRNCIG 133
PDP +F P+RF G H F IPF AG R C G
Sbjct: 413 PDPLEFRPDRFL---PGGEHAGVDVKGSDFELIPFGAGRRICAG 453
>gnl|CDD|166612 PLN02971, PLN02971, tryptophan N-hydroxylase.
Length = 543
Score = 62.0 bits (150), Expect = 1e-11
Identities = 39/155 (25%), Positives = 80/155 (51%), Gaps = 12/155 (7%)
Query: 17 KVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYP----SVPYISRWLEQDLVL 72
K + EI+ + G + + +++ + K+ Y++ +++E+ RL+P ++P+++ D +
Sbjct: 363 KAMEEIDRVVGKE--RFVQESDIPKLNYVKAIIREAFRLHPVAAFNLPHVAL---SDTTV 417
Query: 73 GEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA---GRHPFAYIPFSAGPR 129
Y IP S + + Y + R+P+++ DP F PER E S + +I FS G R
Sbjct: 418 AGYHIPKGSQVLLSRYGLGRNPKVWSDPLSFKPERHLNECSEVTLTENDLRFISFSTGKR 477
Query: 130 NCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVK 164
C ++L +LL+ F+++ S +V+
Sbjct: 478 GCAAPALGTAITTMMLARLLQGFKWKLAGSETRVE 512
>gnl|CDD|178773 PLN03234, PLN03234, cytochrome P450 83B1; Provisional.
Length = 499
Score = 60.9 bits (147), Expect = 4e-11
Identities = 40/124 (32%), Positives = 63/124 (50%), Gaps = 5/124 (4%)
Query: 34 IRKEHLKKMEYLEKVLKESLRLYPSVP-YISRWLEQDLVLGEYTIPAQSNIGIMSYLMHR 92
+ +E + + YL+ V+KESLRL P +P + R D +G Y IPA++ I + ++ + R
Sbjct: 339 VSEEDIPNLPYLKAVIKESLRLEPVIPILLHRETIADAKIGGYDIPAKTIIQVNAWAVSR 398
Query: 93 SPELYPD-PEKFDPERFSKENSA---GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQL 148
+ D P +F PERF KE+ F +PF +G R C + ++ L
Sbjct: 399 DTAAWGDNPNEFIPERFMKEHKGVDFKGQDFELLPFGSGRRMCPAMHLGIAMVEIPFANL 458
Query: 149 LRKF 152
L KF
Sbjct: 459 LYKF 462
>gnl|CDD|178373 PLN02774, PLN02774, brassinosteroid-6-oxidase.
Length = 463
Score = 57.5 bits (139), Expect = 4e-10
Identities = 43/154 (27%), Positives = 70/154 (45%), Gaps = 19/154 (12%)
Query: 28 PQECKDIRKEHL-----------------KKMEYLEKVLKESLRLYPSVPYISRWLEQDL 70
P+ +++RKEHL K M + V+ E+ RL V + R QD+
Sbjct: 295 PKALQELRKEHLAIRERKRPEDPIDWNDYKSMRFTRAVIFETSRLATIVNGVLRKTTQDM 354
Query: 71 VLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRN 130
L Y IP I + + ++ P LYPDP F+P R+ + S H + ++ F G R
Sbjct: 355 ELNGYVIPKGWRIYVYTREINYDPFLYPDPMTFNPWRW-LDKSLESHNYFFL-FGGGTRL 412
Query: 131 CIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVK 164
C G+ ++E L + ++R+E V +K
Sbjct: 413 CPGKELGIVEISTFLHYFVTRYRWEEVGGDKLMK 446
>gnl|CDD|215086 PLN00168, PLN00168, Cytochrome P450; Provisional.
Length = 519
Score = 56.1 bits (135), Expect = 1e-09
Identities = 42/152 (27%), Positives = 72/152 (47%), Gaps = 8/152 (5%)
Query: 13 SFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYI-SRWLEQDLV 71
S Q K+ EI+ G + +++ +E + KM YL+ V+ E LR +P ++ +D+
Sbjct: 338 SIQSKLHDEIKAKTGDDQ-EEVSEEDVHKMPYLKAVVLEGLRKHPPAHFVLPHKAAEDME 396
Query: 72 LGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERF------SKENSAGRHPFAYIPFS 125
+G Y IP + + M M R + P +F PERF + G +PF
Sbjct: 397 VGGYLIPKGATVNFMVAEMGRDEREWERPMEFVPERFLAGGDGEGVDVTGSREIRMMPFG 456
Query: 126 AGPRNCIGQRFAMMEEKVILTQLLRKFRFEAV 157
G R C G AM+ + + ++R+F ++ V
Sbjct: 457 VGRRICAGLGIAMLHLEYFVANMVREFEWKEV 488
>gnl|CDD|166628 PLN02987, PLN02987, Cytochrome P450, family 90, subfamily A.
Length = 472
Score = 49.2 bits (117), Expect = 3e-07
Identities = 31/113 (27%), Positives = 50/113 (44%)
Query: 40 KKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPD 99
K M + + V+ E+LR+ + I R D+ + YTIP + +H E + D
Sbjct: 327 KSMPFTQCVVNETLRVANIIGGIFRRAMTDIEVKGYTIPKGWKVFASFRAVHLDHEYFKD 386
Query: 100 PEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKF 152
F+P R+ + + PF GPR C G A + V L +L+ +F
Sbjct: 387 ARTFNPWRWQSNSGTTVPSNVFTPFGGGPRLCPGYELARVALSVFLHRLVTRF 439
>gnl|CDD|215600 PLN03141, PLN03141, 3-epi-6-deoxocathasterone 23-monooxygenase;
Provisional.
Length = 452
Score = 43.6 bits (103), Expect = 2e-05
Identities = 37/145 (25%), Positives = 68/145 (46%), Gaps = 12/145 (8%)
Query: 44 YLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYL--MHRSPELYPDPE 101
+ + V+ E+LR+ + + R +D+ + Y IP +++Y +H E Y +P
Sbjct: 316 FTQNVITETLRMGNIINGVMRKAMKDVEIKGYLIP--KGWCVLAYFRSVHLDEENYDNPY 373
Query: 102 KFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPD 161
+F+P R+ +E F PF G R C G A +E + L L+ +FR+ V+ D
Sbjct: 374 QFNPWRW-QEKDMNNSSFT--PFGGGQRLCPGLDLARLEASIFLHHLVTRFRW--VAEED 428
Query: 162 QVKCIPYVVLRPLNSELMVRITPRR 186
+ P V ++ +L + +T
Sbjct: 429 TIVNFPTVRMK---RKLPIWVTRID 450
>gnl|CDD|215350 PLN02648, PLN02648, allene oxide synthase.
Length = 480
Score = 43.0 bits (102), Expect = 3e-05
Identities = 34/138 (24%), Positives = 63/138 (45%), Gaps = 18/138 (13%)
Query: 39 LKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVL----GEYTIPAQSNIGIMSYLMHRSP 94
L+KM ++ V+ E+LR+ P VP+ +D V+ + I + L+ R P
Sbjct: 330 LEKMPLVKSVVYEALRIEPPVPFQYGRAREDFVIESHDAAFEIKKGEMLFGYQPLVTRDP 389
Query: 95 ELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGP---------RNCIGQRFAMMEEKVIL 145
+++ PE+F P+RF E G Y+ +S G + C G+ F ++ ++ +
Sbjct: 390 KVFDRPEEFVPDRFMGE--EGEKLLKYVFWSNGRETESPTVGNKQCAGKDFVVLVARLFV 447
Query: 146 TQLLRK---FRFEAVSSP 160
+L + F E +S
Sbjct: 448 AELFLRYDSFEIEVDTSG 465
>gnl|CDD|217513 pfam03360, Glyco_transf_43, Glycosyltransferase family 43.
Length = 206
Score = 30.0 bits (68), Expect = 0.60
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
Query: 73 GEYTIPAQSNI----GIMS-YLMHRSPELYPDPEKFDPERFSKENSAGRH 117
GE T P SNI G+ +L+ ++P Y DP P + N A R
Sbjct: 19 GEATTPLVSNILRRTGLPYTHLVVKTPSGYKDPTWLKPRGVEQRNLALRW 68
>gnl|CDD|220372 pfam09737, Det1, De-etiolated protein 1 Det1. This is the
C-terminal conserved 400 residues of Det1 proteins of
approximately 550 amino acids. Det1 (de-etiolated-1) is
an essential negative regulator of plant light
responses, and it is a component of the Arabidopsis CDD
complex containing DDB1 and COP10 ubiquitin E2 variant.
Mammalian Det1 forms stable DDD-E2 complexes, consisting
of DDB1, DDA1 (DET1, DDB1 Associated 1), and a member of
the UBE2E group of canonical ubiquitin conjugating
enzymes and modulates Cul4A function.
Length = 407
Score = 29.7 bits (67), Expect = 0.84
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 3/31 (9%)
Query: 3 PGTYLKTSLFSFQDKVVSEIEDIFGPQECKD 33
YL SLFS+ DK VS +E P+ C D
Sbjct: 316 SSPYLDLSLFSYDDKWVSAMER---PKPCAD 343
>gnl|CDD|132351 TIGR03308, phn_thr-fam, phosphonate metabolim protein, transferase
hexapeptide repeat family. This family of proteins
contains copies of the Bacterial transferase hexapeptide
repeat family (pfam00132) and is only found in operons
encoding the phosphonate C-P lyase system (GenProp0232).
Many C-P lyase operons, however, lack a homolog of this
protein.
Length = 204
Score = 29.0 bits (65), Expect = 1.3
Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 6/78 (7%)
Query: 41 KMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDP 100
+ E L + L S + R+ E +GE T + +G SY+M +Y
Sbjct: 3 VLLSPEPTLHPTAELTESK--LGRYTE----IGERTRLREVALGDYSYVMRDCDIIYTTI 56
Query: 101 EKFDPERFSKENSAGRHP 118
KF +A HP
Sbjct: 57 GKFCSIAAMVRINATNHP 74
>gnl|CDD|216918 pfam02179, BAG, BAG domain. Domain present in Hsp70 regulators.
Length = 76
Score = 26.8 bits (60), Expect = 2.1
Identities = 10/41 (24%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 16 DKVVSEIEDIFGPQECKDIRKEHLKKMEYL-EKVLKESLRL 55
+ ++ E+E P+ + K+ K+ + L E ++K L+L
Sbjct: 3 NAILDEVEKELLPEVEQFDGKKLEKEYKKLSEMLMKLLLKL 43
>gnl|CDD|216842 pfam02009, Rifin_STEVOR, Rifin/stevor family. Several multicopy
gene families have been described in Plasmodium
falciparum, including the stevor family of subtelomeric
open reading frames and the rif interspersed repetitive
elements. Both families contain three predicted
transmembrane segments. It has been proposed that
stevor and rif are members of a larger superfamily that
code for variant surface antigens.
Length = 290
Score = 28.1 bits (63), Expect = 2.7
Identities = 14/35 (40%), Positives = 18/35 (51%), Gaps = 9/35 (25%)
Query: 29 QECKD---------IRKEHLKKMEYLEKVLKESLR 54
Q+CK+ I K+ L+K EKV KE LR
Sbjct: 64 QKCKEQCDKEIQKIILKDKLEKKSLAEKVEKECLR 98
>gnl|CDD|171822 PRK12938, PRK12938, acetyacetyl-CoA reductase; Provisional.
Length = 246
Score = 28.1 bits (62), Expect = 2.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 57 PSVPYISRWLEQDLVLGEYTIPAQSNIG 84
P+ P +WLE LG I ++ N+G
Sbjct: 36 PNSPRRVKWLEDQKALGFDFIASEGNVG 63
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 28.3 bits (63), Expect = 2.8
Identities = 11/55 (20%), Positives = 17/55 (30%), Gaps = 1/55 (1%)
Query: 42 MEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPEL 96
+ L K+L P +S W G Y+ P + R+P
Sbjct: 358 LRDLRKLLGPEDVPDPVNFLVSDWHTDPYARGSYSYPPVGDDSRY-RPALRTPVG 411
>gnl|CDD|217603 pfam03537, DUF297, TM1410 hypothetical-related protein.
Length = 203
Score = 27.6 bits (62), Expect = 3.7
Identities = 9/29 (31%), Positives = 11/29 (37%), Gaps = 2/29 (6%)
Query: 99 DPEKFDPERFSKENSAGRHPFAYIPFSAG 127
DP F + +AG AY S G
Sbjct: 24 DPFSFSKAEIAALKAAGTKVIAY--LSVG 50
>gnl|CDD|215141 PLN02252, PLN02252, nitrate reductase [NADPH].
Length = 888
Score = 27.7 bits (62), Expect = 4.8
Identities = 19/51 (37%), Positives = 28/51 (54%), Gaps = 6/51 (11%)
Query: 139 MEEKVILTQLLRKFRFEAVSSPDQVKCIP---YVVLRP-LNSEL-MVRITP 184
+ EK+ L+ +R FRF A+ S D V +P +V L +N +L M TP
Sbjct: 639 LVEKISLSHDVRLFRF-ALPSEDHVLGLPVGKHVFLCATINGKLCMRAYTP 688
>gnl|CDD|129592 TIGR00501, met_pdase_II, methionine aminopeptidase, type II.
Methionine aminopeptidase (map) is a cobalt-binding
enzyme. Bacterial and organellar examples (type I)
differ from eukaroytic and archaeal (type II) examples
in lacking a region of approximately 60 amino acids
between the 4th and 5th cobalt-binding ligands. The role
of this protein in general is to produce the mature
amino end of cytosolic proteins by removing the
N-terminal methionine. This model describes type II,
among which the eukaryotic members typically have an
N-terminal extension not present in archaeal members. It
can act cotranslationally. The enzyme from rat has been
shown to associate with translation initiation factor 2
(IF-2) and may have a role in translational regulation
[Protein fate, Protein modification and repair].
Length = 295
Score = 27.1 bits (60), Expect = 5.5
Identities = 8/32 (25%), Positives = 17/32 (53%)
Query: 37 EHLKKMEYLEKVLKESLRLYPSVPYISRWLEQ 68
E +++ +LK Y ++P+ RWL++
Sbjct: 212 ERPVRLDSARNLLKTIDENYGTLPFARRWLDK 243
>gnl|CDD|225535 COG2988, COG2988, Succinylglutamate desuccinylase [Amino acid
transport and metabolism].
Length = 324
Score = 26.6 bits (59), Expect = 7.9
Identities = 11/29 (37%), Positives = 13/29 (44%), Gaps = 1/29 (3%)
Query: 117 HPFAYIPFSAGPRNCIGQRFAMMEEKVIL 145
H YI F P G R +M EK+I
Sbjct: 296 HDTEYILFPN-PYVAKGLRAGLMLEKLIN 323
>gnl|CDD|237010 PRK11886, PRK11886, bifunctional biotin--[acetyl-CoA-carboxylase]
synthetase/biotin operon repressor; Provisional.
Length = 319
Score = 26.7 bits (60), Expect = 8.0
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 3/33 (9%)
Query: 45 LEKVLKESLRLY---PSVPYISRWLEQDLVLGE 74
L K L+ +L L+ P++ RW + DL LG
Sbjct: 241 LIKQLRAALELFEQEGLAPFLERWKKLDLFLGR 273
>gnl|CDD|227474 COG5145, RAD14, DNA excision repair protein [DNA replication,
recombination, and repair].
Length = 292
Score = 26.5 bits (58), Expect = 9.0
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 21 EIEDIFGPQECKDIRKEHLKKMEYLEK 47
E+ED FG C+ R K + L K
Sbjct: 130 ELEDTFGISVCRSCRHSMPDKYKLLTK 156
>gnl|CDD|240619 cd00401, SAHH, S-Adenosylhomocysteine Hydrolase, NAD-binding and
catalytic domains. S-adenosyl-L-homocysteine hydrolase
(SAHH, AdoHycase) catalyzes the hydrolysis of
S-adenosyl-L-homocysteine (AdoHyc) to form adenosine
(Ado) and homocysteine (Hcy). The equilibrium lies far
on the side of AdoHyc synthesis, but in nature the
removal of Ado and Hyc is sufficiently fast, so that the
net reaction is in the direction of hydrolysis. Since
AdoHyc is a potent inhibitor of S-adenosyl-L-methionine
dependent methyltransferases, AdoHycase plays a critical
role in the modulation of the activity of various
methyltransferases. The enzyme forms homotetramers, with
each monomer binding one molecule of NAD+.
Length = 402
Score = 26.6 bits (60), Expect = 9.1
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 8/29 (27%)
Query: 19 VSEIEDIF----GPQECKD-IRKEHLKKM 42
++I DIF G KD IR EH +KM
Sbjct: 247 AAKIGDIFVTATG---NKDVIRGEHFEKM 272
>gnl|CDD|225586 COG3044, COG3044, Predicted ATPase of the ABC class [General
function prediction only].
Length = 554
Score = 26.8 bits (59), Expect = 9.3
Identities = 7/41 (17%), Positives = 16/41 (39%)
Query: 11 LFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKE 51
F+ + E I + +++ HL L ++ +E
Sbjct: 122 ELRFRMSMPLEGRMILAKKASEELLTFHLPAYIRLAELERE 162
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0714 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 10,089,691
Number of extensions: 946677
Number of successful extensions: 986
Number of sequences better than 10.0: 1
Number of HSP's gapped: 938
Number of HSP's successfully gapped: 54
Length of query: 189
Length of database: 10,937,602
Length adjustment: 91
Effective length of query: 98
Effective length of database: 6,901,388
Effective search space: 676336024
Effective search space used: 676336024
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.4 bits)