RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2604
(189 letters)
>d1tqna_ a.104.1.1 (A:) Mammalian cytochrome P450 3a4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 472
Score = 147 bits (372), Expect = 3e-43
Identities = 59/172 (34%), Positives = 98/172 (56%), Gaps = 4/172 (2%)
Query: 15 QDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLEQDLVLGE 74
Q K+ EI+ + + + + +MEYL+ V+ E+LRL+P + R ++D+ +
Sbjct: 301 QQKLQEEIDAVLPNKAP--PTYDTVLQMEYLDMVVNETLRLFPIAMRLERVCKKDVEING 358
Query: 75 YTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQ 134
IP + I SY +HR P+ + +PEKF PERFSK+N P+ Y PF +GPRNCIG
Sbjct: 359 MFIPKGVVVMIPSYALHRDPKYWTEPEKFLPERFSKKNKDNIDPYIYTPFGSGPRNCIGM 418
Query: 135 RFAMMEEKVILTQLLRKFRFEAVS-SPDQVKCIPYVVLRPLNSELMVRITPR 185
RFA+M K+ L ++L+ F F+ + +K +L+P +++++ R
Sbjct: 419 RFALMNMKLALIRVLQNFSFKPCKETQIPLKLSLGGLLQPEK-PVVLKVESR 469
>d1po5a_ a.104.1.1 (A:) Mammalian cytochrome p450 2b4 {Rabbit
(Oryctolagus cuniculus) [TaxId: 9986]}
Length = 465
Score = 138 bits (347), Expect = 1e-39
Identities = 42/176 (23%), Positives = 70/176 (39%), Gaps = 8/176 (4%)
Query: 14 FQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRW-LEQDLVL 72
++V EIE + G + KM Y + V+ E RL +P+ + +D
Sbjct: 293 VTERVQKEIEQVIGSHRPPALD--DRAKMPYTDAVIHEIQRLGDLIPFGVPHTVTKDTQF 350
Query: 73 GEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCI 132
Y IP + + + P + P F+P F N A + ++PFS G R C+
Sbjct: 351 RGYVIPKNTEVFPVLSSALHDPRYFETPNTFNPGHFLDANGALKRNEGFMPFSLGKRICL 410
Query: 133 GQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPY---VVLRPLNSELMVRITPR 185
G+ A E + T +L+ F + P+ + P V P + +R R
Sbjct: 411 GEGIARTELFLFFTTILQNFSIASPVPPEDIDLTPRESGVGNVPPS--YQIRFLAR 464
>d3czha1 a.104.1.1 (A:40-502) Vitamin D 25-hydroxylase Cyp2R1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 463
Score = 134 bits (337), Expect = 3e-38
Identities = 53/184 (28%), Positives = 78/184 (42%), Gaps = 6/184 (3%)
Query: 4 GTYLKTSLFSFQDKVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPY-I 62
+ Q +V EI+ I GP + KM Y E VL E LR VP I
Sbjct: 283 AILFMALYPNIQGQVQKEIDLIMGP--NGKPSWDDKCKMPYTEAVLHEVLRFCNIVPLGI 340
Query: 63 SRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYI 122
+D V+ Y+IP + + Y +H + + DPE F PERF + A +
Sbjct: 341 FHATSEDAVVRGYSIPKGTTVITNLYSVHFDEKYWRDPEVFHPERFLDSSGYFAKKEALV 400
Query: 123 PFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVS-SPDQVKCIPYVVLRPLNSELMVR 181
PFS G R+C+G+ A ME + T LL++F +K + L+P ++
Sbjct: 401 PFSLGRRHCLGEHLARMEMFLFFTALLQRFHLHFPHELVPDLKPRLGMTLQPQP--YLIC 458
Query: 182 ITPR 185
R
Sbjct: 459 AERR 462
>d1r9oa_ a.104.1.1 (A:) Mammalian cytochrome p450 2c9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 467
Score = 119 bits (299), Expect = 8e-33
Identities = 40/162 (24%), Positives = 65/162 (40%), Gaps = 6/162 (3%)
Query: 30 ECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLE-QDLVLGEYTIPAQSNIGIMSY 88
+ + M Y + V+ E R +P D+ Y IP + I I
Sbjct: 308 RNRSPCMQDRSHMPYTDAVVHEVQRYIDLLPTSLPHAVTCDIKFRNYLIPKGTTILISLT 367
Query: 89 LMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQL 148
+ + +P+PE FDP F E + ++PFSAG R C+G+ A ME + LT +
Sbjct: 368 SVLHDNKEFPNPEMFDPHHFLDEGGNFKKSKYFMPFSAGKRICVGEALAGMELFLFLTSI 427
Query: 149 LRKFRFEAVSSPDQVKCIPYV---VLRPLNSELMVRITPRRN 187
L+ F +++ P + P V P + P +
Sbjct: 428 LQNFNLKSLVDPKNLDTTPVVNGFASVPPF--YQLCFIPIHH 467
>d2ij2a1 a.104.1.1 (A:3-455) Cytochrome P450 bm-3 {Bacillus
megaterium [TaxId: 1404]}
Length = 453
Score = 117 bits (294), Expect = 4e-32
Identities = 46/152 (30%), Positives = 84/152 (55%), Gaps = 7/152 (4%)
Query: 37 EHLKKMEYLEKVLKESLRLYPSVPYISRW-LEQDLVLGEYTIPAQSNIGIMSYLMHRSPE 95
+ +K+++Y+ VL E+LRL+P+ P S + E ++ GEY + + ++ +HR
Sbjct: 304 KQVKQLKYVGMVLNEALRLWPTAPAFSLYAKEDTVLGGEYPLEKGDELMVLIPQLHRDKT 363
Query: 96 LY-PDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRF 154
++ D E+F PERF EN + A+ PF G R CIGQ+FA+ E ++L +L+ F F
Sbjct: 364 IWGDDVEEFRPERF--ENPSAIPQHAFKPFGNGQRACIGQQFALHEATLVLGMMLKHFDF 421
Query: 155 EAVSSPDQVKCIPYVVLRPLNSELMVRITPRR 186
E ++ + + + L+P +V+ ++
Sbjct: 422 EDHTNYE-LDIKETLTLKPEG--FVVKAKSKK 450
>d2ciba1 a.104.1.1 (A:5-449) Cytochrome p450 14 alpha-sterol
demethylase (cyp51) {Mycobacterium tuberculosis [TaxId:
1773]}
Length = 445
Score = 110 bits (275), Expect = 2e-29
Identities = 34/131 (25%), Positives = 60/131 (45%), Gaps = 1/131 (0%)
Query: 56 YPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKEN-SA 114
+P + + R + + + + I + + +R PE +PDP F P R+ +
Sbjct: 314 HPPLIILMRVAKGEFEVQGHRIHEGDLVAASPAISNRIPEDFPDPHDFVPARYEQPRQED 373
Query: 115 GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPYVVLRPL 174
+ + +IPF AG C+G FA+M+ K I + LLR++ FE P+ + ++ L
Sbjct: 374 LLNRWTWIPFGAGRHRCVGAAFAIMQIKAIFSVLLREYEFEMAQPPESYRNDHSKMVVQL 433
Query: 175 NSELMVRITPR 185
VR R
Sbjct: 434 AQPAAVRYRRR 444
>d1gwia_ a.104.1.1 (A:) Cyp154c1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 403
Score = 104 bits (258), Expect = 3e-27
Identities = 32/134 (23%), Positives = 53/134 (39%), Gaps = 11/134 (8%)
Query: 54 RLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELY-PDPEKFDPERFSKEN 112
P+ + R+ +D+ +G+ IPA + + + R + P ++FD R S
Sbjct: 278 FSTPTSHVLIRFAAEDVPVGDRVIPAGDALIVSYGALGRDERAHGPTADRFDLTRTS--- 334
Query: 113 SAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKF-RFEAVSSPDQVKCIPYVVL 171
+I F GP C G + ME V L L +F + +++ P V
Sbjct: 335 -----GNRHISFGHGPHVCPGAALSRMEAGVALPALYARFPHLDLAVPAAELRNKPVVTQ 389
Query: 172 RPLNSELMVRITPR 185
L EL VR+
Sbjct: 390 NDLF-ELPVRLAHH 402
>d1cpta_ a.104.1.1 (A:) Cytochrome P450-TERP {Pseudomonas sp.
[TaxId: 306]}
Length = 428
Score = 102 bits (254), Expect = 1e-26
Identities = 28/129 (21%), Positives = 51/129 (39%), Gaps = 12/129 (9%)
Query: 56 YPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAG 115
V R D + I I + +R E++ +P++FD RF
Sbjct: 311 TAPVKSFMRTALADTEVRGQNIKRGDRIMLSYPSANRDEEVFSNPDEFDITRF------- 363
Query: 116 RHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPYVVLRPLN 175
P ++ F G C+GQ A +E K+ +LL K + +S P ++ + +
Sbjct: 364 --PNRHLGFGWGAHMCLGQHLAKLEMKIFFEELLPKLKSVELSGPPRL--VATNFVGGPK 419
Query: 176 SELMVRITP 184
+ + +R T
Sbjct: 420 N-VPIRFTK 427
>d1izoa_ a.104.1.1 (A:) Cytochrome p450 152a1 (Bs-beta) {Bacillus
subtilis [TaxId: 1423]}
Length = 411
Score = 101 bits (252), Expect = 2e-26
Identities = 30/149 (20%), Positives = 59/149 (39%), Gaps = 9/149 (6%)
Query: 42 MEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPE 101
E ++E R YP P++ +++D V +++ + Y + P L+ P+
Sbjct: 268 SREREMFVQEVRRYYPFGPFLGALVKKDFVWNNCEFKKGTSVLLDLYGTNHDPRLWDHPD 327
Query: 102 KFDPERFSKENSAGRHPFAYIPFSAG----PRNCIGQRFAMMEEKVILTQLLRKFRFEAV 157
+F PERF++ + F IP G C G+ + K L L+ + ++ V
Sbjct: 328 EFRPERFAERE---ENLFDMIPQGGGHAEKGHRCPGEGITIEVMKASLDFLVHQIEYD-V 383
Query: 158 SSPDQVKCIPYVVLRPLNSELMVRITPRR 186
+ + P S ++ R+
Sbjct: 384 PEQSLHYSLARMPSLP-ESGFVMSGIRRK 411
>d1z8oa1 a.104.1.1 (A:3-404) Cytochrome P450-ERYF {Saccharopolyspora
erythraea [TaxId: 1836]}
Length = 402
Score = 101 bits (250), Expect = 4e-26
Identities = 32/131 (24%), Positives = 57/131 (43%), Gaps = 11/131 (8%)
Query: 53 LRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKEN 112
LR +R+ +++ +G IP S + + + +R P+ +PDP +FD R
Sbjct: 280 LRYIAPPETTTRFAAEEVEIGGVAIPQYSTVLVANGAANRDPKQFPDPHRFDVTRD---- 335
Query: 113 SAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKF-RFEAVSSPDQVKCIPYVVL 171
++ F G C+G+ A +E +V L L +F D V ++L
Sbjct: 336 -----TRGHLSFGQGIHFCMGRPLAKLEGEVALRALFGRFPALSLGIDADDVVWRRSLLL 390
Query: 172 RPLNSELMVRI 182
R ++ L VR+
Sbjct: 391 RGIDH-LPVRL 400
>d1odoa_ a.104.1.1 (A:) Cyp154a1 monooxygenase {Streptomyces
coelicolor [TaxId: 1902]}
Length = 401
Score = 99.1 bits (245), Expect = 2e-25
Identities = 22/118 (18%), Positives = 39/118 (33%), Gaps = 11/118 (9%)
Query: 67 EQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSA 126
+ TI I +R P+ + D + FD R ++ F
Sbjct: 293 TDIALPDGRTIARGEPILASYAAANRHPDWHEDADTFDATRT---------VKEHLAFGH 343
Query: 127 GPRNCIGQRFAMMEEKVILTQLLRKF-RFEAVSSPDQVKCIPYVVLRPLNSELMVRIT 183
G C+G A ME + L L +F +++ +P ++ L V +
Sbjct: 344 GVHFCLGAPLARMEVTLALESLFGRFPDLRLADPAEELPPVPSLISNGHQR-LPVLLH 400
>d1lfka_ a.104.1.1 (A:) p450 monoxygenase OxyB {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 394
Score = 94.9 bits (234), Expect = 6e-24
Identities = 29/128 (22%), Positives = 46/128 (35%), Gaps = 11/128 (8%)
Query: 55 LYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSA 114
L R +DL L I ++ +R P L PD ++ D R
Sbjct: 276 LTVPYSPTPRIAREDLTLAGQEIKKGDSVICSLPAANRDPALAPDVDRLDVTR------- 328
Query: 115 GRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKF-RFEAVSSPDQVKCIPYVVLRP 173
P ++ F G +C+G A +E + + T+L R+F +
Sbjct: 329 --EPIPHVAFGHGVHHCLGAALARLELRTVFTELWRRFPALRLADPAQDTEFRLTTPAYG 386
Query: 174 LNSELMVR 181
L +ELMV
Sbjct: 387 L-TELMVA 393
>d1ue8a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus tokodaii [TaxId:
111955]}
Length = 367
Score = 90.7 bits (223), Expect = 2e-22
Identities = 31/142 (21%), Positives = 64/142 (45%), Gaps = 13/142 (9%)
Query: 42 MEYLEKVLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPE 101
+ K ++E+LR P V R ++ + + + I + + +R E++ DP+
Sbjct: 237 EKGALKAVEEALRFSPPVMRTIRVTKEKVKIRDQVIDEGELVRVWIASANRDEEVFKDPD 296
Query: 102 KFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPD 161
F P+R P ++ F +G C+G A +E ++ L + +KFR + + +
Sbjct: 297 SFIPDR---------TPNPHLSFGSGIHLCLGAPLARLEARIALEEFAKKFRVKEIVKKE 347
Query: 162 QVKCIPYVVLRPLNSELMVRIT 183
++ VL +L+VR+
Sbjct: 348 KI---DNEVLNGY-RKLVVRVE 365
>d1q5da_ a.104.1.1 (A:) Cytochrome P450epok {Sorangium cellulosum
[TaxId: 56]}
Length = 401
Score = 90.7 bits (223), Expect = 2e-22
Identities = 24/120 (20%), Positives = 44/120 (36%), Gaps = 12/120 (10%)
Query: 65 WLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPF 124
+ QDL +I + ++ R ++ P+ FD R A + +
Sbjct: 293 FARQDLEYCGASIKKGEMVFLLIPSALRDGTVFSRPDVFDVRRD---------TSASLAY 343
Query: 125 SAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPYVVLRPLNSELMVRITP 184
GP C G A +E ++ + + R RF + + + R + S L V + P
Sbjct: 344 GRGPHVCPGVSLARLEAEIAVGTIFR--RFPEMKLKETPVFGYHPAFRNIES-LNVILKP 400
>d1jfba_ a.104.1.1 (A:) Cytochrome P450-NOR, nitric reductase
{Fungus (Fusarium oxysporum) [TaxId: 5507]}
Length = 399
Score = 90.6 bits (223), Expect = 2e-22
Identities = 23/119 (19%), Positives = 47/119 (39%), Gaps = 9/119 (7%)
Query: 64 RWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIP 123
R ++D+++G+ + A I + +R E++ +P++F+ R P +
Sbjct: 288 RTAKEDVMIGDKLVRANEGIIASNQSANRDEEVFENPDEFNMNRK-------WPPQDPLG 340
Query: 124 FSAGPRNCIGQRFAMMEEKVILTQLLRKF-RFEAVSSPDQVKCIPYVVLRPLNSELMVR 181
F G CI + A E + + L +KF + ++ P + L V
Sbjct: 341 FGFGDHRCIAEHLAKAELTTVFSTLYQKFPDLKVAVPLGKINYTPLNRDVGIVD-LPVI 398
>d1s1fa_ a.104.1.1 (A:) Cyp158a2 {Streptomyces coelicolor [TaxId:
1902]}
Length = 399
Score = 90.3 bits (222), Expect = 3e-22
Identities = 25/112 (22%), Positives = 47/112 (41%), Gaps = 11/112 (9%)
Query: 73 GEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCI 132
I A + + +R PE++PDP++ D ER P ++ F GP C
Sbjct: 297 KGVRIRAGDAVYVSYLAANRDPEVFPDPDRIDFER---------SPNPHVSFGFGPHYCP 347
Query: 133 GQRFAMMEEKVILTQLLRKF-RFEAVSSPDQVKCIPYVVLRPLNSELMVRIT 183
G A +E ++++ +L + + +P+ V ++R + L V
Sbjct: 348 GGMLARLESELLVDAVLDRVPGLKLAVAPEDVPFKKGALIRGPEA-LPVTWH 398
>d1n97a_ a.104.1.1 (A:) Cyp175a1 {Thermus thermophilus [TaxId: 274]}
Length = 385
Score = 88.7 bits (218), Expect = 9e-22
Identities = 31/100 (31%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 86 MSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVIL 145
+ +PD E F PERF +E G Y PF G R C+G+ FA++E ++L
Sbjct: 293 VLSPYVTQRLHFPDGEAFRPERFLEER--GTPSGRYFPFGLGQRLCLGRDFALLEGPIVL 350
Query: 146 TQLLRKFRFEAVSSPDQVKCIPYVVLRPLNSELMVRITPR 185
R+FR + + P + + V LRP + PR
Sbjct: 351 RAFFRRFRLDPLPFP---RVLAQVTLRPEGG---LPARPR 384
>d1ueda_ a.104.1.1 (A:) p450 monoxygenase OxyC {Amycolatopsis
orientalis [TaxId: 31958]}
Length = 403
Score = 87.9 bits (216), Expect = 2e-21
Identities = 28/135 (20%), Positives = 46/135 (34%), Gaps = 12/135 (8%)
Query: 48 VLKESLRLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPER 107
V + L P R +D+V+ I A + + +R L PDP+ D R
Sbjct: 279 VNELVRYLSPVQAPNPRLAIKDVVIDGQLIKAGDYVLCSILMANRDEALTPDPDVLDANR 338
Query: 108 FSKENSAGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKF-RFEAVSSPDQVKCI 166
+ + F G C+G A ++ L R+F ++VK
Sbjct: 339 A---------AVSDVGFGHGIHYCVGAALARSMLRMAYQTLWRRFPGLRLAVPIEEVKYR 389
Query: 167 PYVVLRPLNSELMVR 181
V P ++ V
Sbjct: 390 SAFVDCP--DQVPVT 402
>d1re9a_ a.104.1.1 (A:) Cytochrome P450-CAM {Pseudomonas putida
[TaxId: 303]}
Length = 404
Score = 87.9 bits (216), Expect = 3e-21
Identities = 23/135 (17%), Positives = 38/135 (28%), Gaps = 11/135 (8%)
Query: 54 RLYPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENS 113
S+ R L D + I + L P D R
Sbjct: 279 LRRFSLVADGRILTSDYEFHGVQLKKGDQILLPQMLSGLDERENACPMHVDFSR------ 332
Query: 114 AGRHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPYVVLRP 173
++ F G C+GQ A E V L + L + +++ Q++ +V
Sbjct: 333 ---QKVSHTTFGHGSHLCLGQHLARREIIVTLKEWLTRIPDFSIAPGAQIQHKSGIVSGV 389
Query: 174 LNSELMVRITPRRNA 188
L + P
Sbjct: 390 --QALPLVWDPATTK 402
>d1n40a_ a.104.1.1 (A:) Cyp121 monooxygenase (P450 Mt2)
{Mycobacterium tuberculosis [TaxId: 1773]}
Length = 395
Score = 84.8 bits (208), Expect = 3e-20
Identities = 18/108 (16%), Positives = 37/108 (34%), Gaps = 10/108 (9%)
Query: 75 YTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCIGQ 134
+ + ++ + PE +P+P + +R +P +++ F G C G
Sbjct: 296 VLVRKGELVLVLLEGANFDPEHFPNPGSIELDRP--------NPTSHLAFGRGQHFCPGS 347
Query: 135 RFAMMEEKVILTQLLRKF-RFEAVSSPDQVKCIPYVVLRPLNSELMVR 181
++ + LL+K + DQ+ R L V
Sbjct: 348 ALGRRHAQIGIEALLKKMPGVDLAVPIDQLVWRTRFQRRIPE-RLPVL 394
>d1io7a_ a.104.1.1 (A:) Cyp119 {Archaeon Sulfolobus solfataricus
[TaxId: 2287]}
Length = 366
Score = 83.0 bits (203), Expect = 1e-19
Identities = 31/128 (24%), Positives = 58/128 (45%), Gaps = 13/128 (10%)
Query: 56 YPSVPYISRWLEQDLVLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAG 115
P V R ++ + LG+ TI + + +R E++ D EKF P+R
Sbjct: 251 SPPVMRTVRKTKERVKLGDQTIEEGEYVRVWIASANRDEEVFHDGEKFIPDR-------- 302
Query: 116 RHPFAYIPFSAGPRNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKCIPYVVLRPLN 175
+P ++ F +G C+G A +E ++ + + ++FR + ++V P VL
Sbjct: 303 -NPNPHLSFGSGIHLCLGAPLARLEARIAIEEFSKRFRHIEILDTEKV---PNEVLNGY- 357
Query: 176 SELMVRIT 183
L+VR+
Sbjct: 358 KRLVVRLK 365
>d1rt8a_ a.40.1.1 (A:) Fimbrin (Plastin), actin-crosslinking domain
{Fission yeast (Schizosaccharomyces pombe) [TaxId:
4896]}
Length = 505
Score = 28.5 bits (63), Expect = 0.49
Identities = 28/157 (17%), Positives = 57/157 (36%), Gaps = 13/157 (8%)
Query: 13 SFQD-KVVSEIEDIFGPQECKDIRKEHLKKMEYLEKVLKESLRLYPSVPYISRWLE-QDL 70
D + + + + P+ C + ++ E+VL+ + +L ++L +
Sbjct: 181 DVSDGENYTVLLNQLAPELCSRAPLQTTDVLQRAEQVLQNAEKLD-----CRKYLTPTAM 235
Query: 71 VLGEYTIPAQSNIGIMSYLMHRSPELYPDPEKFDPERFSKENSAGRHPFAYIPF--SAGP 128
V G + N+ +++L + P L P E+ PE + R + + S
Sbjct: 236 VAGNP----KLNLAFVAHLFNTHPGLEPLNEEEKPEIEPFDAEGEREARVFTLWLNSLDV 291
Query: 129 RNCIGQRFAMMEEKVILTQLLRKFRFEAVSSPDQVKC 165
I F + + +IL Q K V+ K
Sbjct: 292 TPSIHDFFNNLRDGLILLQAYDKITPNTVNWKKVNKA 328
>d1ppje2 f.23.12.1 (E:1-69) Iron-sulfur subunit (ISP) of cytochrome
bc1 complex (Ubiquinol-cytochrome c reductase),
transmembrane region {Cow (Bos taurus) [TaxId: 9913]}
Length = 69
Score = 25.5 bits (56), Expect = 1.1
Identities = 11/31 (35%), Positives = 16/31 (51%)
Query: 97 YPDPEKFDPERFSKENSAGRHPFAYIPFSAG 127
Y PE D + SKE+S R F+Y+ +
Sbjct: 13 YRRPEVLDSTKSSKESSEARKGFSYLVTATT 43
>d1z7ma1 d.104.1.1 (A:6-323) ATP phosphoribosyltransferase
regulatory subunit HisZ {Lactococcus lactis [TaxId:
1358]}
Length = 318
Score = 25.0 bits (53), Expect = 7.2
Identities = 16/127 (12%), Positives = 35/127 (27%), Gaps = 15/127 (11%)
Query: 28 PQECKDIRKEHLKKMEYLEKVLKESLRLY-------PSVPYISRWL-----EQDLVLGEY 75
P+E ++ +K + +E L++ L PS Y + + +
Sbjct: 4 PEESAEMTLNQVKSLRQIEGRLRKLFSLKNYQEVMPPSFEYTQLYTALESNGKTFNQEKM 63
Query: 76 TIPAQSNIGIMSYLMHRSP---ELYPDPEKFDPERFSKENSAGRHPFAYIPFSAGPRNCI 132
+ ++ + LY + R+S R + S
Sbjct: 64 FQFIKHEGQSITLRYDFTLPLVRLYSQIKDSTSARYSYFGKIFRKEKRHKGRSTENYQIG 123
Query: 133 GQRFAMM 139
+ F
Sbjct: 124 IELFGES 130
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.138 0.409
Gapped
Lambda K H
0.267 0.0393 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 746,578
Number of extensions: 35597
Number of successful extensions: 130
Number of sequences better than 10.0: 1
Number of HSP's gapped: 110
Number of HSP's successfully gapped: 29
Length of query: 189
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 109
Effective length of database: 1,309,196
Effective search space: 142702364
Effective search space used: 142702364
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)