Query psy2605
Match_columns 53
No_of_seqs 106 out of 1306
Neff 8.0
Searched_HMMs 46136
Date Fri Aug 16 20:27:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2272 PnbA Carboxylesterase 99.6 1.4E-16 3.1E-21 101.8 4.1 49 1-49 97-147 (491)
2 PF00135 COesterase: Carboxyle 99.6 6E-17 1.3E-21 101.3 -0.4 49 1-49 128-178 (535)
3 KOG4389|consensus 99.5 2.1E-15 4.6E-20 97.0 1.8 46 1-46 138-185 (601)
4 cd00312 Esterase_lipase Estera 99.4 1.7E-13 3.6E-18 86.3 4.6 48 1-48 98-146 (493)
5 KOG1516|consensus 99.3 6.2E-13 1.3E-17 84.7 3.0 47 1-47 115-164 (545)
6 KOG1515|consensus 99.3 2.4E-12 5.2E-17 79.7 3.0 40 1-40 93-136 (336)
7 PF07859 Abhydrolase_3: alpha/ 99.0 1.3E-10 2.9E-15 66.0 0.8 40 1-40 1-42 (211)
8 COG0657 Aes Esterase/lipase [L 98.9 8.6E-10 1.9E-14 66.4 2.5 41 1-41 82-124 (312)
9 PRK10162 acetyl esterase; Prov 98.8 3.9E-09 8.4E-14 64.3 3.2 41 1-41 84-126 (318)
10 KOG4388|consensus 97.4 0.00012 2.7E-09 49.3 2.3 41 1-41 399-441 (880)
11 KOG4627|consensus 96.5 0.0031 6.6E-08 38.2 3.0 41 1-41 70-111 (270)
12 PF10340 DUF2424: Protein of u 94.4 0.023 5.1E-07 36.3 1.5 45 1-45 125-175 (374)
13 PF03991 Prion_octapep: Copper 93.1 0.039 8.5E-07 16.8 0.4 6 5-10 2-7 (8)
14 COG1506 DAP2 Dipeptidyl aminop 93.0 0.14 3E-06 34.2 3.3 38 1-39 397-435 (620)
15 TIGR01840 esterase_phb esteras 92.2 0.1 2.3E-06 29.8 1.7 38 1-38 16-54 (212)
16 PF03403 PAF-AH_p_II: Platelet 91.9 0.18 4E-06 32.0 2.6 35 1-39 103-139 (379)
17 PF12695 Abhydrolase_5: Alpha/ 88.0 0.4 8.8E-06 25.0 1.6 35 1-39 2-38 (145)
18 PF12697 Abhydrolase_6: Alpha/ 72.6 2.9 6.2E-05 22.6 1.6 31 1-36 1-33 (228)
19 PRK10115 protease 2; Provision 69.9 7 0.00015 26.8 3.2 37 1-39 448-486 (686)
20 PRK10566 esterase; Provisional 67.8 4.6 0.0001 23.1 1.8 33 1-37 30-64 (249)
21 PLN00021 chlorophyllase 64.1 6.3 0.00014 24.4 2.0 32 1-36 55-88 (313)
22 TIGR01738 bioH putative pimelo 59.5 11 0.00025 20.6 2.3 31 1-36 7-39 (245)
23 KOG3847|consensus 58.7 8.6 0.00019 25.0 1.9 35 1-39 121-157 (399)
24 PF14041 Lipoprotein_21: LppP/ 57.4 3.6 7.8E-05 21.0 0.1 35 1-36 28-63 (89)
25 TIGR03100 hydr1_PEP hydrolase, 56.3 13 0.00028 22.2 2.3 35 1-36 29-66 (274)
26 PLN02298 hydrolase, alpha/beta 53.5 16 0.00034 22.1 2.4 32 1-36 62-96 (330)
27 TIGR02806 clostrip clostripain 47.3 9.7 0.00021 25.5 0.9 11 1-11 118-128 (476)
28 PRK10349 carboxylesterase BioH 46.4 16 0.00035 20.9 1.6 31 1-36 16-48 (256)
29 PF03415 Peptidase_C11: Clostr 46.2 6.8 0.00015 25.2 0.0 9 1-9 102-110 (397)
30 PLN02385 hydrolase; alpha/beta 45.5 14 0.0003 22.6 1.3 32 1-36 90-124 (349)
31 TIGR03611 RutD pyrimidine util 45.0 18 0.00038 20.1 1.6 31 1-36 16-48 (257)
32 TIGR01250 pro_imino_pep_2 prol 44.9 24 0.00051 19.9 2.1 33 1-36 28-62 (288)
33 TIGR02821 fghA_ester_D S-formy 44.7 21 0.00045 21.3 1.9 33 1-36 45-81 (275)
34 PRK10673 acyl-CoA esterase; Pr 44.3 19 0.00041 20.4 1.7 31 1-36 19-51 (255)
35 PLN02965 Probable pheophorbida 44.2 29 0.00063 20.0 2.5 32 1-36 6-39 (255)
36 TIGR01249 pro_imino_pep_1 prol 44.1 30 0.00066 20.7 2.6 33 1-36 30-62 (306)
37 TIGR03695 menH_SHCHC 2-succiny 43.3 24 0.00051 19.2 1.9 31 1-36 4-36 (251)
38 PF06184 Potex_coat: Potexviru 40.5 7.5 0.00016 21.7 -0.4 14 26-39 134-147 (153)
39 PF11144 DUF2920: Protein of u 40.4 15 0.00033 24.1 1.0 20 18-37 56-75 (403)
40 TIGR03056 bchO_mg_che_rel puta 37.2 25 0.00053 20.0 1.4 31 1-36 31-63 (278)
41 PF07082 DUF1350: Protein of u 37.1 29 0.00064 21.4 1.8 36 1-37 19-57 (250)
42 PRK10985 putative hydrolase; P 37.0 20 0.00043 21.8 1.1 13 25-37 85-97 (324)
43 TIGR02427 protocat_pcaD 3-oxoa 36.3 41 0.0009 18.3 2.2 11 26-36 38-48 (251)
44 PRK06489 hypothetical protein; 35.5 49 0.0011 20.4 2.6 11 26-36 104-114 (360)
45 PF00326 Peptidase_S9: Prolyl 35.4 45 0.00097 18.7 2.3 18 21-39 9-26 (213)
46 PRK11126 2-succinyl-6-hydroxy- 35.1 26 0.00057 19.7 1.3 30 1-36 5-36 (242)
47 PF15017 AF1Q: Drug resistance 32.7 20 0.00044 18.7 0.5 9 6-14 72-80 (87)
48 COG3150 Predicted esterase [Ge 32.5 20 0.00044 21.2 0.5 16 1-19 2-17 (191)
49 TIGR03343 biphenyl_bphD 2-hydr 32.1 30 0.00066 19.9 1.3 35 1-36 33-69 (282)
50 TIGR02240 PHA_depoly_arom poly 32.0 46 0.001 19.4 2.0 31 1-36 28-60 (276)
51 PLN02442 S-formylglutathione h 31.1 41 0.00089 20.2 1.7 33 1-36 50-86 (283)
52 PLN02894 hydrolase, alpha/beta 29.9 36 0.00079 21.6 1.4 31 1-36 108-140 (402)
53 PRK03204 haloalkane dehalogena 29.4 38 0.00082 20.2 1.4 31 1-36 37-69 (286)
54 PRK00870 haloalkane dehalogena 29.2 45 0.00099 19.7 1.7 32 1-36 49-82 (302)
55 PF13227 DUF4035: Protein of u 26.6 30 0.00066 16.4 0.5 8 35-42 4-11 (53)
56 PF10503 Esterase_phd: Esteras 26.2 39 0.00085 20.1 1.0 31 1-34 19-53 (220)
57 COG3531 Predicted protein-disu 26.0 82 0.0018 19.1 2.3 17 2-18 33-49 (212)
58 COG3509 LpqC Poly(3-hydroxybut 24.9 58 0.0013 20.8 1.7 30 1-33 64-97 (312)
59 PRK14875 acetoin dehydrogenase 24.8 78 0.0017 19.1 2.2 31 1-36 134-166 (371)
60 KOG3967|consensus 24.1 36 0.00077 21.2 0.6 13 1-13 104-116 (297)
61 PLN02679 hydrolase, alpha/beta 24.0 57 0.0012 20.2 1.5 31 1-36 91-123 (360)
62 PF03283 PAE: Pectinacetyleste 23.7 39 0.00084 21.6 0.7 13 1-13 53-65 (361)
63 PLN02211 methyl indole-3-aceta 23.3 97 0.0021 18.4 2.4 32 1-36 21-54 (273)
64 KOG4586|consensus 23.0 45 0.00098 19.0 0.8 13 33-45 100-112 (156)
65 PRK02655 psbI photosystem II r 22.7 58 0.0013 14.4 1.0 12 36-47 17-28 (38)
66 PF04443 LuxE: Acyl-protein sy 22.6 1.1E+02 0.0023 19.7 2.5 16 2-17 224-239 (365)
67 COG2819 Predicted hydrolase of 22.2 67 0.0014 20.0 1.5 37 1-37 41-77 (264)
68 PHA02857 monoglyceride lipase; 21.3 93 0.002 18.0 2.0 31 2-36 29-61 (276)
69 COG2411 Uncharacterized conser 21.0 33 0.00071 20.3 0.0 14 2-15 41-54 (188)
70 KOG2542|consensus 20.7 64 0.0014 21.7 1.3 16 28-45 179-194 (500)
71 TIGR03101 hydr2_PEP hydrolase, 20.6 81 0.0018 19.2 1.7 16 21-37 51-66 (266)
No 1
>COG2272 PnbA Carboxylesterase type B [Lipid metabolism]
Probab=99.65 E-value=1.4e-16 Score=101.77 Aligned_cols=49 Identities=61% Similarity=0.950 Sum_probs=45.4
Q ss_pred CEEEeCCCCccCCCCC--CCcHHHHcCCCeEEEEeCCCCCCCCCCCCcCcc
Q psy2605 1 MVFIHGESYEWNSGNA--YDGSVLASYGGVVVVTVNYRLGILGMPLLMSID 49 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~--~~~~~l~~~~~~v~v~~~yRl~~~Gf~~~~~~~ 49 (53)
|||||||+|..|+... |+++.++++.++|+|++||||++||||..++++
T Consensus 97 mV~IHGG~y~~Gs~s~~~ydgs~La~~g~vVvVSvNYRLG~lGfL~~~~~~ 147 (491)
T COG2272 97 MVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALGFLDLSSLD 147 (491)
T ss_pred EEEEeccccccCCCcccccChHHHHhcCCEEEEEeCcccccceeeehhhcc
Confidence 6999999999999874 899999998889999999999999999998765
No 2
>PF00135 COesterase: Carboxylesterase family The prints entry is specific to acetylcholinesterase; InterPro: IPR002018 Higher eukaryotes have many distinct esterases. Among the different types are those which act on carboxylic esters (3.1.1 from EC). Carboxyl-esterases have been classified into three categories (A, B and C) on the basis of differential patterns of inhibition by organophosphates. The sequence of a number of type-B carboxylesterases indicates [, , ] that the majority are evolutionary related. As is the case for lipases and serine proteases, the catalytic apparatus of esterases involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.; PDB: 3B3Q_A 1CLE_B 1GQS_A 2VJD_A 1HBJ_A 2C5G_A 1U65_A 2WG1_A 1FSS_A 3M3D_A ....
Probab=99.61 E-value=6e-17 Score=101.27 Aligned_cols=49 Identities=49% Similarity=0.856 Sum_probs=35.6
Q ss_pred CEEEeCCCCccCCC--CCCCcHHHHcCCCeEEEEeCCCCCCCCCCCCcCcc
Q psy2605 1 MVFIHGESYEWNSG--NAYDGSVLASYGGVVVVTVNYRLGILGMPLLMSID 49 (53)
Q Consensus 1 ~v~~hGGg~~~g~~--~~~~~~~l~~~~~~v~v~~~yRl~~~Gf~~~~~~~ 49 (53)
|||||||+|..|++ ..+++..++...++|+|++|||||+||||++++.+
T Consensus 128 ~v~ihGG~f~~G~~~~~~~~~~~~~~~~~vivVt~nYRlg~~Gfl~~~~~~ 178 (535)
T PF00135_consen 128 MVWIHGGGFMFGSGSFPPYDGASLAASKDVIVVTINYRLGAFGFLSLGDLD 178 (535)
T ss_dssp EEEE--STTTSSCTTSGGGHTHHHHHHHTSEEEEE----HHHHH-BSSSTT
T ss_pred EEEeecccccCCCcccccccccccccCCCEEEEEecccccccccccccccc
Confidence 59999999999999 45667776666799999999999999999998753
No 3
>KOG4389|consensus
Probab=99.54 E-value=2.1e-15 Score=97.03 Aligned_cols=46 Identities=37% Similarity=0.676 Sum_probs=43.3
Q ss_pred CEEEeCCCCccCCCC--CCCcHHHHcCCCeEEEEeCCCCCCCCCCCCc
Q psy2605 1 MVFIHGESYEWNSGN--AYDGSVLASYGGVVVVTVNYRLGILGMPLLM 46 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~--~~~~~~l~~~~~~v~v~~~yRl~~~Gf~~~~ 46 (53)
||||.||||..|+++ .|+++.+++.+++|+|++|||+|+||||..+
T Consensus 138 lVWiyGGGF~sGt~SLdvYdGk~la~~envIvVs~NYRvG~FGFL~l~ 185 (601)
T KOG4389|consen 138 LVWIYGGGFYSGTPSLDVYDGKFLAAVENVIVVSMNYRVGAFGFLYLP 185 (601)
T ss_pred EEEEEcCccccCCcceeeeccceeeeeccEEEEEeeeeeccceEEecC
Confidence 699999999999997 5899999999999999999999999999984
No 4
>cd00312 Esterase_lipase Esterases and lipases (includes fungal lipases, cholinesterases, etc.) These enzymes act on carboxylic esters (EC: 3.1.1.-). The catalytic apparatus involves three residues (catalytic triad): a serine, a glutamate or aspartate and a histidine.These catalytic residues are responsible for the nucleophilic attack on the carbonyl carbon atom of the ester bond. In contrast with other alpha/beta hydrolase fold family members, p-nitrobenzyl esterase and acetylcholine esterase have a Glu instead of Asp at the active site carboxylate.
Probab=99.43 E-value=1.7e-13 Score=86.30 Aligned_cols=48 Identities=48% Similarity=0.830 Sum_probs=42.2
Q ss_pred CEEEeCCCCccCCCCCCCcHHHHcCCC-eEEEEeCCCCCCCCCCCCcCc
Q psy2605 1 MVFIHGESYEWNSGNAYDGSVLASYGG-VVVVTVNYRLGILGMPLLMSI 48 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~~~l~~~~~-~v~v~~~yRl~~~Gf~~~~~~ 48 (53)
|||||||+|..|+...++...+++..+ +++|++|||++++||+++++.
T Consensus 98 ~v~ihGG~~~~g~~~~~~~~~~~~~~~~~~vv~~~yRlg~~g~~~~~~~ 146 (493)
T cd00312 98 MVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLGFLSTGDI 146 (493)
T ss_pred EEEEcCCccccCCCCCCChHHHHhcCCCEEEEEecccccccccccCCCC
Confidence 589999999999998877778877665 999999999999999988753
No 5
>KOG1516|consensus
Probab=99.34 E-value=6.2e-13 Score=84.72 Aligned_cols=47 Identities=38% Similarity=0.619 Sum_probs=40.5
Q ss_pred CEEEeCCCCccCCCCC---CCcHHHHcCCCeEEEEeCCCCCCCCCCCCcC
Q psy2605 1 MVFIHGESYEWNSGNA---YDGSVLASYGGVVVVTVNYRLGILGMPLLMS 47 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~---~~~~~l~~~~~~v~v~~~yRl~~~Gf~~~~~ 47 (53)
|||||||+|..|++.. +.........++|+|++|||||+|||+++.+
T Consensus 115 ~V~iHGG~~~~gs~~~~~~~~~~~~~~~~~VVvVt~~YRLG~lGF~st~d 164 (545)
T KOG1516|consen 115 MVYIHGGGFQFGSASSFEIISPAYVLLLKDVVVVTINYRLGPLGFLSTGD 164 (545)
T ss_pred EEEEeCCceeeccccchhhcCchhccccCCEEEEEecccceeceeeecCC
Confidence 5999999999999854 4566666677999999999999999999974
No 6
>KOG1515|consensus
Probab=99.28 E-value=2.4e-12 Score=79.71 Aligned_cols=40 Identities=43% Similarity=0.625 Sum_probs=34.5
Q ss_pred CEEEeCCCCccCCCC--CCC--cHHHHcCCCeEEEEeCCCCCCC
Q psy2605 1 MVFIHGESYEWNSGN--AYD--GSVLASYGGVVVVTVNYRLGIL 40 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~--~~~--~~~l~~~~~~v~v~~~yRl~~~ 40 (53)
+||+|||||+.+++. .|+ +.++++..++++|+++|||+|-
T Consensus 93 lvyfHGGGf~~~S~~~~~y~~~~~~~a~~~~~vvvSVdYRLAPE 136 (336)
T KOG1515|consen 93 LVYFHGGGFCLGSANSPAYDSFCTRLAAELNCVVVSVDYRLAPE 136 (336)
T ss_pred EEEEeCCccEeCCCCCchhHHHHHHHHHHcCeEEEecCcccCCC
Confidence 589999999999875 454 5678888899999999999994
No 7
>PF07859 Abhydrolase_3: alpha/beta hydrolase fold A web page of Esterases and alpha/beta hydrolases.; InterPro: IPR013094 The alpha/beta hydrolase fold [] is common to a number of hydrolytic enzymes of widely differing phylogenetic origin and catalytic function. The core of each enzyme is an alpha/beta-sheet (rather than a barrel), containing 8 strands connected by helices []. The enzymes are believed to have diverged from a common ancestor, preserving the arrangement of the catalytic residues. All have a catalytic triad, the elements of which are borne on loops, which are the best conserved structural features of the fold. Esterase (EST) from Pseudomonas putida is a member of the alpha/beta hydrolase fold superfamily of enzymes []. In most of the family members the beta-strands are parallels, but some have an inversion of the first strands, which gives it an antiparallel orientation. The catalytic triad residues are presented on loops. One of these is the nucleophile elbow and is the most conserved feature of the fold. Some other members lack one or all of the catalytic residues. Some members are therefore inactive but others are involved in surface recognition. The ESTHER database [] gathers and annotates all the published information related to gene and protein sequences of this superfamily []. This entry represents the catalytic domain fold-3 of alpha/beta hydrolase. ; GO: 0016787 hydrolase activity, 0008152 metabolic process; PDB: 3D7R_B 2C7B_B 3ZWQ_B 2YH2_B 3BXP_A 3D3N_A 1LZK_A 1LZL_A 2O7V_A 2O7R_A ....
Probab=98.98 E-value=1.3e-10 Score=65.96 Aligned_cols=40 Identities=35% Similarity=0.520 Sum_probs=28.4
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRLGIL 40 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yRl~~~ 40 (53)
|||+|||||+.|+.+... ...++++.++++++++||++|-
T Consensus 1 v~~~HGGg~~~g~~~~~~~~~~~la~~~g~~v~~~~Yrl~p~ 42 (211)
T PF07859_consen 1 VVYIHGGGWVMGSKESHWPFAARLAAERGFVVVSIDYRLAPE 42 (211)
T ss_dssp EEEE--STTTSCGTTTHHHHHHHHHHHHTSEEEEEE---TTT
T ss_pred CEEECCcccccCChHHHHHHHHHHHhhccEEEEEeecccccc
Confidence 689999999999998653 4566765689999999999984
No 8
>COG0657 Aes Esterase/lipase [Lipid metabolism]
Probab=98.90 E-value=8.6e-10 Score=66.38 Aligned_cols=41 Identities=34% Similarity=0.508 Sum_probs=36.0
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRLGILG 41 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yRl~~~G 41 (53)
++|+|||||..|+..+++ ...++...++++++++||++|-.
T Consensus 82 vly~HGGg~~~g~~~~~~~~~~~~~~~~g~~vv~vdYrlaPe~ 124 (312)
T COG0657 82 VLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRLAPEH 124 (312)
T ss_pred EEEEeCCeeeecChhhhHHHHHHHHHHcCCEEEecCCCCCCCC
Confidence 589999999999999874 55677778999999999999977
No 9
>PRK10162 acetyl esterase; Provisional
Probab=98.81 E-value=3.9e-09 Score=64.25 Aligned_cols=41 Identities=27% Similarity=0.539 Sum_probs=34.5
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRLGILG 41 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yRl~~~G 41 (53)
+||+|||||..|+.+.++ +..++...++.+++++||++|-.
T Consensus 84 vv~~HGGg~~~g~~~~~~~~~~~la~~~g~~Vv~vdYrlape~ 126 (318)
T PRK10162 84 LFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTLSPEA 126 (318)
T ss_pred EEEEeCCcccCCCchhhhHHHHHHHHHcCCEEEEecCCCCCCC
Confidence 589999999999988765 45677767899999999999843
No 10
>KOG4388|consensus
Probab=97.38 E-value=0.00012 Score=49.29 Aligned_cols=41 Identities=22% Similarity=0.327 Sum_probs=34.1
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYRLGILG 41 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yRl~~~G 41 (53)
++++|||||+..+.+.++. ..++...++.+++++|.|+|-.
T Consensus 399 i~HcHGGGfVAqsSkSHE~YLr~Wa~aL~cPiiSVdYSLAPEa 441 (880)
T KOG4388|consen 399 IVHCHGGGFVAQSSKSHEPYLRSWAQALGCPIISVDYSLAPEA 441 (880)
T ss_pred EEEecCCceeeeccccccHHHHHHHHHhCCCeEEeeeccCCCC
Confidence 4799999999999988764 4566667899999999999853
No 11
>KOG4627|consensus
Probab=96.54 E-value=0.0031 Score=38.18 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=31.8
Q ss_pred CEEEeCCCCccCCCCC-CCcHHHHcCCCeEEEEeCCCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNA-YDGSVLASYGGVVVVTVNYRLGILG 41 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~-~~~~~l~~~~~~v~v~~~yRl~~~G 41 (53)
.||||||-|..|..+. .....-+.+.+..++++.|-++|-+
T Consensus 70 fIfIHGGYW~~g~rk~clsiv~~a~~~gY~vasvgY~l~~q~ 111 (270)
T KOG4627|consen 70 FIFIHGGYWQEGDRKMCLSIVGPAVRRGYRVASVGYNLCPQV 111 (270)
T ss_pred EEEEecchhhcCchhcccchhhhhhhcCeEEEEeccCcCccc
Confidence 3899999999998875 3444445556899999999998865
No 12
>PF10340 DUF2424: Protein of unknown function (DUF2424); InterPro: IPR019436 Sterol homeostasis in eukaryotic cells relies on the reciprocal interconversion of free sterols and steryl esters. In Saccharomyces cerevisiae (Baker's yeast) sterol acetylation requires the acetyltransferase Atf2, whereas deacetylation requires Say1, a membrane-anchored deacetylase with a putative active site in the ER lumen. Lack of Say1 results in the secretion of acetylated sterols into the culture medium, indicating that the substrate specificity of Say1 determines whether acetylated sterols are secreted from the cells or whether they are deacetylated and retained. In S. cerevisiae cells lacking Say1 or Atf2 are sensitive against the plant-derived allylbenzene eugenol and both Say1 and Atf2 affect pregnenolone toxicity, indicating that lipid acetylation acts as a detoxification pathway []. Homologues of Say1 are present in the mammalian genome and can functionally substitute for Say1 in yeast demonstrating that part of this pathway has been evolutionarily conserved [].
Probab=94.42 E-value=0.023 Score=36.28 Aligned_cols=45 Identities=16% Similarity=0.293 Sum_probs=28.7
Q ss_pred CEEEeCCCCccCCCCC-CCc-HHHH-cCCCeEEEEeCCCCCC---CCCCCC
Q psy2605 1 MVFIHGESYEWNSGNA-YDG-SVLA-SYGGVVVVTVNYRLGI---LGMPLL 45 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~-~~~-~~l~-~~~~~v~v~~~yRl~~---~Gf~~~ 45 (53)
++|+|||||..+..+. ... ..+- .-.++.++.++|.+.+ .|+...
T Consensus 125 lIYlHGGGY~l~~~p~qi~~L~~i~~~l~~~SILvLDYsLt~~~~~~~~yP 175 (374)
T PF10340_consen 125 LIYLHGGGYFLGTTPSQIEFLLNIYKLLPEVSILVLDYSLTSSDEHGHKYP 175 (374)
T ss_pred EEEEcCCeeEecCCHHHHHHHHHHHHHcCCCeEEEEeccccccccCCCcCc
Confidence 5899999999988763 221 1111 1114566678999998 766443
No 13
>PF03991 Prion_octapep: Copper binding octapeptide repeat; InterPro: IPR020949 Prion protein (PrP-c) [, , ] is a small glycoprotein found in high quantity in the brain of animals infected with certain degenerative neurological diseases, such as sheep scrapie and bovine spongiform encephalopathy (BSE), and the human dementias Creutzfeldt-Jacob disease (CJD) and Gerstmann-Straussler syndrome (GSS). PrP-c is encoded in the host genome and is expressed both in normal and infected cells. During infection, however, the PrP-c molecule become altered (conformationally rather than at the amino acid level) to an abnormal isoform, PrP-sc. In detergent-treated brain extracts from infected individuals, fibrils composed of polymers of PrP-sc, namely scrapie-associated fibrils or prion rods, can be evidenced by electron microscopy. The precise function of the normal PrP isoform in healthy individuals remains unknown. Several results, mainly obtained in transgenic animals, indicate that PrP-c might play a role in long-term potentiation, in sleep physiology, in oxidative burst compensation (PrP can fix four Cu2+ through its octarepeat domain), in interactions with the extracellular matrix (PrP-c can bind to the precursor of the laminin receptor, LRP), in apoptosis and in signal transduction (costimulation of PrP-c induces a modulation of Fyn kinase phosphorylation) []. The normal isoform, PrP-c, is anchored at the cell membrane, in rafts, through a glycosyl phosphatidyl inositol (GPI); its half-life at the cell surface is 5 h, after which the protein is internalised through a caveolae-dependent mechanism and degraded in the endolysosome compartment. Conversion between PrP-c and PrP-sc occurs likely during the internalisation process. This repeat is found at the amino terminus of mammalian prion proteins. It has been shown to bind to copper [].
Probab=93.10 E-value=0.039 Score=16.84 Aligned_cols=6 Identities=33% Similarity=0.861 Sum_probs=4.8
Q ss_pred eCCCCc
Q psy2605 5 HGESYE 10 (53)
Q Consensus 5 hGGg~~ 10 (53)
|||+|.
T Consensus 2 hgG~Wg 7 (8)
T PF03991_consen 2 HGGGWG 7 (8)
T ss_pred CCCcCC
Confidence 889884
No 14
>COG1506 DAP2 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases [Amino acid transport and metabolism]
Probab=93.03 E-value=0.14 Score=34.17 Aligned_cols=38 Identities=34% Similarity=0.409 Sum_probs=24.6
Q ss_pred CEEEeCCCCccCCCC-CCCcHHHHcCCCeEEEEeCCCCCC
Q psy2605 1 MVFIHGESYEWNSGN-AYDGSVLASYGGVVVVTVNYRLGI 39 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~-~~~~~~l~~~~~~v~v~~~yRl~~ 39 (53)
+||+|||=...-... ....+.++. .+.+|+.+|||=+.
T Consensus 397 i~~~hGGP~~~~~~~~~~~~q~~~~-~G~~V~~~n~RGS~ 435 (620)
T COG1506 397 IVYIHGGPSAQVGYSFNPEIQVLAS-AGYAVLAPNYRGST 435 (620)
T ss_pred EEEeCCCCccccccccchhhHHHhc-CCeEEEEeCCCCCC
Confidence 589999952222211 223455665 68999999999654
No 15
>TIGR01840 esterase_phb esterase, PHB depolymerase family. This model describes a subfamily among lipases of the ab-hydrolase family. This subfamily includes bacterial depolymerases for poly(3-hydroxybutyrate) (PHB) and related polyhydroxyalkanoates (PHA), as well as acetyl xylan esterases, feruloyl esterases, and others from fungi.
Probab=92.18 E-value=0.1 Score=29.84 Aligned_cols=38 Identities=16% Similarity=0.066 Sum_probs=24.0
Q ss_pred CEEEeCCCCccCCCC-CCCcHHHHcCCCeEEEEeCCCCC
Q psy2605 1 MVFIHGESYEWNSGN-AYDGSVLASYGGVVVVTVNYRLG 38 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~-~~~~~~l~~~~~~v~v~~~yRl~ 38 (53)
+|++||++....... ...-..++++.+++++.+++|-.
T Consensus 16 vv~lHG~~~~~~~~~~~~~~~~~a~~~g~~Vv~Pd~~g~ 54 (212)
T TIGR01840 16 VLALHGCGQTASAYVIDWGWKAAADRYGFVLVAPEQTSY 54 (212)
T ss_pred EEEeCCCCCCHHHHhhhcChHHHHHhCCeEEEecCCcCc
Confidence 589999884332211 11233455567899999999853
No 16
>PF03403 PAF-AH_p_II: Platelet-activating factor acetylhydrolase, isoform II; PDB: 3F98_B 3F97_B 3D59_A 3F96_A 3D5E_B 3F9C_A.
Probab=91.89 E-value=0.18 Score=31.98 Aligned_cols=35 Identities=37% Similarity=0.530 Sum_probs=19.7
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRLGI 39 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yRl~~ 39 (53)
|||.||=+ |+...|. +..+|+ .++||+++++|-+.
T Consensus 103 vIFSHGlg---g~R~~yS~~~~eLAS-~GyVV~aieHrDgS 139 (379)
T PF03403_consen 103 VIFSHGLG---GSRTSYSAICGELAS-HGYVVAAIEHRDGS 139 (379)
T ss_dssp EEEE--TT-----TTTTHHHHHHHHH-TT-EEEEE---SS-
T ss_pred EEEeCCCC---cchhhHHHHHHHHHh-CCeEEEEeccCCCc
Confidence 58899954 6666664 667888 58999999999865
No 17
>PF12695 Abhydrolase_5: Alpha/beta hydrolase family; PDB: 3D0K_B 2I3D_B 3DOH_B 3DOI_B 3PFB_A 3S2Z_B 3PFC_A 3QM1_A 3PF8_B 3PF9_A ....
Probab=87.98 E-value=0.4 Score=25.04 Aligned_cols=35 Identities=31% Similarity=0.408 Sum_probs=23.2
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRLGI 39 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yRl~~ 39 (53)
+|++||.+- +...+. ...+++ .++.++.++||...
T Consensus 2 vv~~HG~~~---~~~~~~~~~~~l~~-~G~~v~~~~~~~~~ 38 (145)
T PF12695_consen 2 VVLLHGWGG---SRRDYQPLAEALAE-QGYAVVAFDYPGHG 38 (145)
T ss_dssp EEEECTTTT---TTHHHHHHHHHHHH-TTEEEEEESCTTST
T ss_pred EEEECCCCC---CHHHHHHHHHHHHH-CCCEEEEEecCCCC
Confidence 589999874 233332 234555 48999999998643
No 18
>PF12697 Abhydrolase_6: Alpha/beta hydrolase family; PDB: 3LLC_A 3A2N_E 3A2M_A 3A2L_A 3AFI_F 3C5V_A 3C5W_P 3E0X_A 2ZJF_A 3QYJ_A ....
Probab=72.57 E-value=2.9 Score=22.56 Aligned_cols=31 Identities=32% Similarity=0.579 Sum_probs=19.3
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||.+ ++...+.. ..++ .+..++.+++|
T Consensus 1 vv~~hG~~---~~~~~~~~~~~~l~--~~~~v~~~d~~ 33 (228)
T PF12697_consen 1 VVFLHGFG---GSSESWDPLAEALA--RGYRVIAFDLP 33 (228)
T ss_dssp EEEE-STT---TTGGGGHHHHHHHH--TTSEEEEEECT
T ss_pred eEEECCCC---CCHHHHHHHHHHHh--CCCEEEEEecC
Confidence 58999986 33344432 3453 47888888887
No 19
>PRK10115 protease 2; Provisional
Probab=69.86 E-value=7 Score=26.78 Aligned_cols=37 Identities=27% Similarity=0.287 Sum_probs=23.5
Q ss_pred CEEEeCCCCccCCCCCCCcH--HHHcCCCeEEEEeCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDGS--VLASYGGVVVVTVNYRLGI 39 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~~--~l~~~~~~v~v~~~yRl~~ 39 (53)
+++.||| +.......+... .+++ .+.+++.+|+|=|.
T Consensus 448 ll~~hGg-~~~~~~p~f~~~~~~l~~-rG~~v~~~n~RGs~ 486 (686)
T PRK10115 448 LVYGYGS-YGASIDADFSFSRLSLLD-RGFVYAIVHVRGGG 486 (686)
T ss_pred EEEEECC-CCCCCCCCccHHHHHHHH-CCcEEEEEEcCCCC
Confidence 4788984 433333445433 3555 58999999999653
No 20
>PRK10566 esterase; Provisional
Probab=67.82 E-value=4.6 Score=23.14 Aligned_cols=33 Identities=27% Similarity=0.435 Sum_probs=20.9
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRL 37 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yRl 37 (53)
+|++||.+ ++...+. ...+++ .++.++.++||-
T Consensus 30 vv~~HG~~---~~~~~~~~~~~~l~~-~G~~v~~~d~~g 64 (249)
T PRK10566 30 VFFYHGFT---SSKLVYSYFAVALAQ-AGFRVIMPDAPM 64 (249)
T ss_pred EEEeCCCC---cccchHHHHHHHHHh-CCCEEEEecCCc
Confidence 57899853 2333332 234544 589999999995
No 21
>PLN00021 chlorophyllase
Probab=64.06 E-value=6.3 Score=24.43 Aligned_cols=32 Identities=28% Similarity=0.427 Sum_probs=20.6
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yR 36 (53)
+||+||.++. ...+. ...+++ .+++++.++++
T Consensus 55 Vv~lHG~~~~---~~~y~~l~~~Las-~G~~VvapD~~ 88 (313)
T PLN00021 55 LLFLHGYLLY---NSFYSQLLQHIAS-HGFIVVAPQLY 88 (313)
T ss_pred EEEECCCCCC---cccHHHHHHHHHh-CCCEEEEecCC
Confidence 5899998743 33333 234555 47899999855
No 22
>TIGR01738 bioH putative pimeloyl-BioC--CoA transferase BioH. This CoA-binding enzyme is required for the production of pimeloyl-coenzyme A, the substrate of the BioF protein early in the biosynthesis of biotin. Its exact function is unknown, but is proposed in ref 2. This enzyme belongs to the alpha/beta hydrolase fold family (pfam model pfam00561). Members of this family are restricted to the Proteobacteria.
Probab=59.47 E-value=11 Score=20.58 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=17.8
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||.+ ++...+.. ..+. .+..++.+++|
T Consensus 7 iv~~HG~~---~~~~~~~~~~~~l~--~~~~vi~~d~~ 39 (245)
T TIGR01738 7 LVLIHGWG---MNAEVFRCLDEELS--AHFTLHLVDLP 39 (245)
T ss_pred EEEEcCCC---CchhhHHHHHHhhc--cCeEEEEecCC
Confidence 58899853 33333332 2333 34778888887
No 23
>KOG3847|consensus
Probab=58.70 E-value=8.6 Score=24.97 Aligned_cols=35 Identities=40% Similarity=0.472 Sum_probs=25.3
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRLGI 39 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yRl~~ 39 (53)
+||.||=| |+.+.|. +..+++ .++||..+.+|...
T Consensus 121 vvFSHGLg---gsRt~YSa~c~~LAS-hG~VVaavEHRD~S 157 (399)
T KOG3847|consen 121 VVFSHGLG---GSRTLYSAYCTSLAS-HGFVVAAVEHRDRS 157 (399)
T ss_pred EEEecccc---cchhhHHHHhhhHhh-CceEEEEeecccCc
Confidence 47888843 5566664 567887 58999999999743
No 24
>PF14041 Lipoprotein_21: LppP/LprE lipoprotein
Probab=57.36 E-value=3.6 Score=21.03 Aligned_cols=35 Identities=23% Similarity=0.299 Sum_probs=17.7
Q ss_pred CEEEeCCCCccCCCC-CCCcHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGN-AYDGSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~-~~~~~~l~~~~~~v~v~~~yR 36 (53)
+++||.|.|+.-... .+....... .+--.|.++||
T Consensus 28 vl~Fh~G~fiGt~t~~p~~~~~v~~-~~~~~V~V~Y~ 63 (89)
T PF14041_consen 28 VLFFHDGEFIGTATPDPYGYIDVIR-STDDTVTVQYR 63 (89)
T ss_pred EEEEECCEEcccCCccccCceeEEe-eCCCEEEEEEE
Confidence 478999997654332 343222222 22234455666
No 25
>TIGR03100 hydr1_PEP hydrolase, ortholog 1, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 2, TIGR03101) of the same superfamily.
Probab=56.33 E-value=13 Score=22.16 Aligned_cols=35 Identities=26% Similarity=0.486 Sum_probs=20.4
Q ss_pred CEEEeCCC-CccCCCCCCC--cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGES-YEWNSGNAYD--GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg-~~~g~~~~~~--~~~l~~~~~~v~v~~~yR 36 (53)
+|++|||. +..|+...+. ...+++ .++.++.+++|
T Consensus 29 vv~i~gg~~~~~g~~~~~~~la~~l~~-~G~~v~~~Dl~ 66 (274)
T TIGR03100 29 VLIVVGGPQYRVGSHRQFVLLARRLAE-AGFPVLRFDYR 66 (274)
T ss_pred EEEEeCCccccCCchhHHHHHHHHHHH-CCCEEEEeCCC
Confidence 46777654 3344433322 234444 57899999988
No 26
>PLN02298 hydrolase, alpha/beta fold family protein
Probab=53.52 E-value=16 Score=22.05 Aligned_cols=32 Identities=19% Similarity=0.361 Sum_probs=19.6
Q ss_pred CEEEeCCCCccCCCCC-CC--cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNA-YD--GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~-~~--~~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ .+... +. ...+++ .++.++.+++|
T Consensus 62 VvllHG~~---~~~~~~~~~~~~~L~~-~Gy~V~~~D~r 96 (330)
T PLN02298 62 IFMVHGYG---NDISWTFQSTAIFLAQ-MGFACFALDLE 96 (330)
T ss_pred EEEEcCCC---CCcceehhHHHHHHHh-CCCEEEEecCC
Confidence 58899975 11121 21 223444 57999999999
No 27
>TIGR02806 clostrip clostripain. Clostripain is a cysteine protease characterized from Clostridium histolyticum, and also known from Clostridium perfringens. It is a heterodimer processed from a single precursor polypeptide, specific for Arg-|-Xaa peptide bonds. The older term alpha-clostripain refers to the most active, most reduced form, rather than to the product of one of several different genes. Clostripain belongs to the peptidase family C11, or clostripain family (see pfam03415).
Probab=47.32 E-value=9.7 Score=25.50 Aligned_cols=11 Identities=18% Similarity=0.154 Sum_probs=9.4
Q ss_pred CEEEeCCCCcc
Q psy2605 1 MVFIHGESYEW 11 (53)
Q Consensus 1 ~v~~hGGg~~~ 11 (53)
++|-||+||.-
T Consensus 118 IiwnHG~GW~p 128 (476)
T TIGR02806 118 IMANHGGGAKD 128 (476)
T ss_pred EEEeCCCCCcC
Confidence 58999999984
No 28
>PRK10349 carboxylesterase BioH; Provisional
Probab=46.36 E-value=16 Score=20.94 Aligned_cols=31 Identities=19% Similarity=0.307 Sum_probs=17.4
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ ++...+.. ..+.+ ..-++.+++|
T Consensus 16 ivllHG~~---~~~~~w~~~~~~L~~--~~~vi~~Dl~ 48 (256)
T PRK10349 16 LVLLHGWG---LNAEVWRCIDEELSS--HFTLHLVDLP 48 (256)
T ss_pred EEEECCCC---CChhHHHHHHHHHhc--CCEEEEecCC
Confidence 57899854 33334432 23433 3667777777
No 29
>PF03415 Peptidase_C11: Clostripain family This family belongs to family C11 of the peptidase classification.; InterPro: IPR005077 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C11 (clostripain family, clan CD). ; PDB: 3UWS_A.
Probab=46.19 E-value=6.8 Score=25.18 Aligned_cols=9 Identities=22% Similarity=0.756 Sum_probs=5.9
Q ss_pred CEEEeCCCC
Q psy2605 1 MVFIHGESY 9 (53)
Q Consensus 1 ~v~~hGGg~ 9 (53)
++|-||+||
T Consensus 102 Ilw~HG~Gw 110 (397)
T PF03415_consen 102 ILWDHGGGW 110 (397)
T ss_dssp EEES-B-TT
T ss_pred EEEECCCCC
Confidence 478999999
No 30
>PLN02385 hydrolase; alpha/beta fold family protein
Probab=45.50 E-value=14 Score=22.65 Aligned_cols=32 Identities=25% Similarity=0.458 Sum_probs=19.5
Q ss_pred CEEEeCCCCccCCCCC-CC--cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNA-YD--GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~-~~--~~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+- +... +. ...+++ .++.++.+++|
T Consensus 90 iv~lHG~~~---~~~~~~~~~~~~l~~-~g~~v~~~D~~ 124 (349)
T PLN02385 90 VCFCHGYGD---TCTFFFEGIARKIAS-SGYGVFAMDYP 124 (349)
T ss_pred EEEECCCCC---ccchHHHHHHHHHHh-CCCEEEEecCC
Confidence 478999542 2222 22 123443 57999999998
No 31
>TIGR03611 RutD pyrimidine utilization protein D. This protein is observed in operons extremely similar to that characterized in E. coli K-12 responsible for the import and catabolism of pyrimidines, primarily uracil. This protein is a member of the hydrolase, alpha/beta fold family defined by pfam00067.
Probab=44.95 E-value=18 Score=20.13 Aligned_cols=31 Identities=32% Similarity=0.397 Sum_probs=17.8
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||.+ ++...+.. ..+. .+..++.+++|
T Consensus 16 iv~lhG~~---~~~~~~~~~~~~l~--~~~~vi~~D~~ 48 (257)
T TIGR03611 16 VVLSSGLG---GSGSYWAPQLDVLT--QRFHVVTYDHR 48 (257)
T ss_pred EEEEcCCC---cchhHHHHHHHHHH--hccEEEEEcCC
Confidence 47888865 33333322 1233 35788888887
No 32
>TIGR01250 pro_imino_pep_2 proline-specific peptidases, Bacillus coagulans-type subfamily. This model describes a subfamily of the alpha/beta fold family of hydrolases. Characterized members include prolinases (Pro-Xaa dipeptidase, EC 3.4.13.8), prolyl aminopeptidases (EC 3.4.11.5), and a leucyl aminopeptidase
Probab=44.89 E-value=24 Score=19.86 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=18.4
Q ss_pred CEEEeCCCCccCCCCCC-C-cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAY-D-GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~-~-~~~l~~~~~~v~v~~~yR 36 (53)
+|++||+. ++...+ . -..+.++.+..++.++.|
T Consensus 28 vl~~hG~~---g~~~~~~~~~~~~l~~~g~~vi~~d~~ 62 (288)
T TIGR01250 28 LLLLHGGP---GMSHEYLENLRELLKEEGREVIMYDQL 62 (288)
T ss_pred EEEEcCCC---CccHHHHHHHHHHHHhcCCEEEEEcCC
Confidence 57899864 222222 1 122333336888888888
No 33
>TIGR02821 fghA_ester_D S-formylglutathione hydrolase. This model describes a protein family from bacteria, yeast, and human, with a conserved critical role in formaldehyde detoxification as S-formylglutathione hydrolase (EC 3.1.2.12). Members in eukaryotes such as the human protein are better known as esterase D (EC 3.1.1.1), an enzyme with broad specificity, although S-formylglutathione hydrolase has now been demonstrated as well.
Probab=44.65 E-value=21 Score=21.29 Aligned_cols=33 Identities=12% Similarity=0.309 Sum_probs=20.4
Q ss_pred CEEEeCCCCccCCCCCC--C--cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAY--D--GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~--~--~~~l~~~~~~v~v~~~yR 36 (53)
++++||.+ ++...+ . ...++.+.++++|.+++.
T Consensus 45 vvllHG~~---~~~~~~~~~~~~~~la~~~g~~Vv~Pd~~ 81 (275)
T TIGR02821 45 LWYLSGLT---CTHENFMIKAGAQRFAAEHGLALVAPDTS 81 (275)
T ss_pred EEEccCCC---CCccHHHhhhHHHHHHhhcCcEEEEeCCC
Confidence 47889875 333322 1 235555568999999973
No 34
>PRK10673 acyl-CoA esterase; Provisional
Probab=44.34 E-value=19 Score=20.40 Aligned_cols=31 Identities=23% Similarity=0.306 Sum_probs=17.6
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||.. ++...+.. ..+++ +.-++.++.|
T Consensus 19 iv~lhG~~---~~~~~~~~~~~~l~~--~~~vi~~D~~ 51 (255)
T PRK10673 19 IVLVHGLF---GSLDNLGVLARDLVN--DHDIIQVDMR 51 (255)
T ss_pred EEEECCCC---CchhHHHHHHHHHhh--CCeEEEECCC
Confidence 57888853 33333332 23333 4677888887
No 35
>PLN02965 Probable pheophorbidase
Probab=44.19 E-value=29 Score=20.03 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=19.2
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||.+ .+...++. ..+.+ .+.-++.+++|
T Consensus 6 vvllHG~~---~~~~~w~~~~~~L~~-~~~~via~Dl~ 39 (255)
T PLN02965 6 FVFVHGAS---HGAWCWYKLATLLDA-AGFKSTCVDLT 39 (255)
T ss_pred EEEECCCC---CCcCcHHHHHHHHhh-CCceEEEecCC
Confidence 58999976 33334442 23433 35777888776
No 36
>TIGR01249 pro_imino_pep_1 proline iminopeptidase, Neisseria-type subfamily. This model represents one of two related families of proline iminopeptidase in the alpha/beta fold hydrolase family. The fine specificities of the various members, including both the range of short peptides from which proline can be removed and whether other amino acids such as alanine can be also removed, may vary among members.
Probab=44.14 E-value=30 Score=20.71 Aligned_cols=33 Identities=24% Similarity=0.278 Sum_probs=16.6
Q ss_pred CEEEeCCCCccCCCCCCCcHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDGSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~~~l~~~~~~v~v~~~yR 36 (53)
+|++||+.- +.............+.-++.+++|
T Consensus 30 lvllHG~~~---~~~~~~~~~~~~~~~~~vi~~D~~ 62 (306)
T TIGR01249 30 VVFLHGGPG---SGTDPGCRRFFDPETYRIVLFDQR 62 (306)
T ss_pred EEEECCCCC---CCCCHHHHhccCccCCEEEEECCC
Confidence 478999642 211111111111235678888887
No 37
>TIGR03695 menH_SHCHC 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase. This protein catalyzes the formation of SHCHC, or (1 R,6 R)-2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate, by elmination of pyruvate from 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate (SEPHCHC). Note that SHCHC synthase activity previously was attributed to MenD, which in fact is SEPHCHC synthase.
Probab=43.31 E-value=24 Score=19.20 Aligned_cols=31 Identities=23% Similarity=0.486 Sum_probs=18.2
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ ++...+.. ..++ .+..++.+++|
T Consensus 4 vv~~hG~~---~~~~~~~~~~~~L~--~~~~v~~~d~~ 36 (251)
T TIGR03695 4 LVFLHGFL---GSGADWQALIELLG--PHFRCLAIDLP 36 (251)
T ss_pred EEEEcCCC---CchhhHHHHHHHhc--ccCeEEEEcCC
Confidence 57899854 33334432 2343 45777888877
No 38
>PF06184 Potex_coat: Potexvirus coat protein; InterPro: IPR010392 This entry represents coat proteins found in several satellite viruses, including satellite panicum mosaic virus [], satellite tobacco mosaic virus [], and satellite tobacco necrosis virus. The coat proteins of satellite viruses consist of a beta-sandwich jelly-roll fold, with usually eight strands making up the two sheets, although some members can have an extra 1-2 strands. The characteristic interaction between the domains of this fold allows the formation of five-fold and pseudo six-fold assemblies. Although the satellite virus coat proteins share the same jelly-roll fold, they differ in the arrangement of their secondary structural elements and in the interactions of adjacent subunits [].; GO: 0005198 structural molecule activity, 0019028 viral capsid; PDB: 1STM_E.
Probab=40.52 E-value=7.5 Score=21.73 Aligned_cols=14 Identities=21% Similarity=0.513 Sum_probs=10.7
Q ss_pred CCeEEEEeCCCCCC
Q psy2605 26 GGVVVVTVNYRLGI 39 (53)
Q Consensus 26 ~~~v~v~~~yRl~~ 39 (53)
.+.+.|.+.||++|
T Consensus 134 ~n~v~v~~~~r~ap 147 (153)
T PF06184_consen 134 SNTVIVQICFRVAP 147 (153)
T ss_dssp SEEEEEEEEEEE--
T ss_pred CceEEEEEEEeeCc
Confidence 57889999999988
No 39
>PF11144 DUF2920: Protein of unknown function (DUF2920); InterPro: IPR022605 This bacterial family of proteins has no known function.
Probab=40.44 E-value=15 Score=24.09 Aligned_cols=20 Identities=35% Similarity=0.375 Sum_probs=16.5
Q ss_pred CcHHHHcCCCeEEEEeCCCC
Q psy2605 18 DGSVLASYGGVVVVTVNYRL 37 (53)
Q Consensus 18 ~~~~l~~~~~~v~v~~~yRl 37 (53)
....+|++-++++|+|+|-.
T Consensus 56 ~r~~iA~~fnvv~I~V~YHC 75 (403)
T PF11144_consen 56 MREYIAKKFNVVVISVNYHC 75 (403)
T ss_pred HHHHHHHhCCEEEEEeeeeh
Confidence 35678888999999999964
No 40
>TIGR03056 bchO_mg_che_rel putative magnesium chelatase accessory protein. Members of this family belong to the alpha/beta fold family hydrolases (PFAM model pfam00561). Members are found in bacterial genomes if and only if they encoded for anoxygenic photosynthetic systems similar to that of Rhodobacter capsulatus and other alpha-Proteobacteria. Members often are encoded in the same operon as subunits of the protoporphyrin IX magnesium chelatase, and were once designated BchO. No literature supports a role as an actual subunit of magnesium chelatase, but an accessory role is possible, as suggested by placement by its probable hydrolase activity.
Probab=37.20 E-value=25 Score=20.04 Aligned_cols=31 Identities=23% Similarity=0.426 Sum_probs=17.7
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ ++...+.. ..+++ ++-++.+++|
T Consensus 31 vv~~hG~~---~~~~~~~~~~~~l~~--~~~vi~~D~~ 63 (278)
T TIGR03056 31 LLLLHGTG---ASTHSWRDLMPPLAR--SFRVVAPDLP 63 (278)
T ss_pred EEEEcCCC---CCHHHHHHHHHHHhh--CcEEEeecCC
Confidence 47888854 33333321 23433 4778888888
No 41
>PF07082 DUF1350: Protein of unknown function (DUF1350); InterPro: IPR010765 This family consists of several hypothetical proteins from both cyanobacteria and plants. Members of this family are typically around 250 residues in length. The function of this family is unknown but the species distribution indicates that the family may be involved in photosynthesis.
Probab=37.12 E-value=29 Score=21.38 Aligned_cols=36 Identities=19% Similarity=0.340 Sum_probs=25.1
Q ss_pred CEEEeCCCCccCCCC-CCC--cHHHHcCCCeEEEEeCCCC
Q psy2605 1 MVFIHGESYEWNSGN-AYD--GSVLASYGGVVVVTVNYRL 37 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~-~~~--~~~l~~~~~~v~v~~~yRl 37 (53)
+|+|-||.|....+. +|. -..+++ +++.+|..-|..
T Consensus 19 vihFiGGaf~ga~P~itYr~lLe~La~-~Gy~ViAtPy~~ 57 (250)
T PF07082_consen 19 VIHFIGGAFVGAAPQITYRYLLERLAD-RGYAVIATPYVV 57 (250)
T ss_pred EEEEcCcceeccCcHHHHHHHHHHHHh-CCcEEEEEecCC
Confidence 478889998766555 343 346665 588998888865
No 42
>PRK10985 putative hydrolase; Provisional
Probab=37.02 E-value=20 Score=21.82 Aligned_cols=13 Identities=23% Similarity=0.284 Sum_probs=10.6
Q ss_pred CCCeEEEEeCCCC
Q psy2605 25 YGGVVVVTVNYRL 37 (53)
Q Consensus 25 ~~~~v~v~~~yRl 37 (53)
+.++.++.+|||=
T Consensus 85 ~~G~~v~~~d~rG 97 (324)
T PRK10985 85 KRGWLGVVMHFRG 97 (324)
T ss_pred HCCCEEEEEeCCC
Confidence 4688999999983
No 43
>TIGR02427 protocat_pcaD 3-oxoadipate enol-lactonase. Members of this family are 3-oxoadipate enol-lactonase. Note that the substrate is known as 3-oxoadipate enol-lactone, 2-oxo-2,3-dihydrofuran-5-acetate, 4,5-Dihydro-5-oxofuran-2-acetate, and 5-oxo-4,5-dihydrofuran-2-acetate. The enzyme the catalyzes the fourth step in the protocatechuate degradation to beta-ketoadipate and then to succinyl-CoA and acetyl-CoA. 4-hydroxybenzoate, 3-hydroxybenzoate, and vanillate all can be converted in one step to protocatechuate. This enzyme also acts in catechol degradation. In genomes that catabolize both catechol and protocatechuate, two forms of this enzyme may be found. All members of the seed alignment for this model were chosen from within protocatechuate degradation operons of at least three genes of the pathway, from genomes with the complete pathway through beta-ketoadipate.
Probab=36.29 E-value=41 Score=18.32 Aligned_cols=11 Identities=18% Similarity=0.163 Sum_probs=8.4
Q ss_pred CCeEEEEeCCC
Q psy2605 26 GGVVVVTVNYR 36 (53)
Q Consensus 26 ~~~v~v~~~yR 36 (53)
.+..++.+++|
T Consensus 38 ~~~~v~~~d~~ 48 (251)
T TIGR02427 38 PDFRVLRYDKR 48 (251)
T ss_pred cccEEEEecCC
Confidence 36788888887
No 44
>PRK06489 hypothetical protein; Provisional
Probab=35.54 E-value=49 Score=20.43 Aligned_cols=11 Identities=0% Similarity=-0.082 Sum_probs=8.4
Q ss_pred CCeEEEEeCCC
Q psy2605 26 GGVVVVTVNYR 36 (53)
Q Consensus 26 ~~~v~v~~~yR 36 (53)
.+.-++.+++|
T Consensus 104 ~~~~Via~Dl~ 114 (360)
T PRK06489 104 SKYFIILPDGI 114 (360)
T ss_pred cCCEEEEeCCC
Confidence 35778888888
No 45
>PF00326 Peptidase_S9: Prolyl oligopeptidase family This family belongs to family S9 of the peptidase classification.; InterPro: IPR001375 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain covers the active site serine of the serine peptidases belonging to MEROPS peptidase family S9 (prolyl oligopeptidase family, clan SC). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Examples of protein families containing this domain are: Prolyl endopeptidase (3.4.21.26 from EC) (PE) (also called post-proline cleaving enzyme). PE is an enzyme that cleaves peptide bonds on the C-terminal side of prolyl residues. The sequence of PE has been obtained from a mammalian species (pig) and from bacteria (Flavobacterium meningosepticum and Aeromonas hydrophila); there is a high degree of sequence conservation between these sequences. Escherichia coli protease II (3.4.21.83 from EC) (oligopeptidase B) (gene prtB) which cleaves peptide bonds on the C-terminal side of lysyl and argininyl residues. Dipeptidyl peptidase IV (3.4.14.5 from EC) (DPP IV). DPP IV is an enzyme that removes N-terminal dipeptides sequentially from polypeptides having unsubstituted N-termini provided that the penultimate residue is proline. Saccharomyces cerevisiae (Baker's yeast) vacuolar dipeptidyl aminopeptidases A and B (DPAP A and DPAP B), encoded by the STE13 and DAP2 genes respectively. DPAP A is responsible for the proteolytic maturation of the alpha-factor precursor. Acylamino-acid-releasing enzyme (3.4.19.1 from EC) (acyl-peptide hydrolase). This enzyme catalyses the hydrolysis of the amino-terminal peptide bond of an N-acetylated protein to generate a N-acetylated amino acid and a protein with a free amino-terminus. These proteins belong to MEROPS peptidase families S9A, S9B and S9C.; GO: 0008236 serine-type peptidase activity, 0006508 proteolysis; PDB: 2AJ8_D 1ORV_D 2AJB_C 2BUC_D 1ORW_D 2AJC_D 2AJD_C 2BUA_A 2HU8_B 3O4J_B ....
Probab=35.40 E-value=45 Score=18.72 Aligned_cols=18 Identities=44% Similarity=0.486 Sum_probs=12.5
Q ss_pred HHHcCCCeEEEEeCCCCCC
Q psy2605 21 VLASYGGVVVVTVNYRLGI 39 (53)
Q Consensus 21 ~l~~~~~~v~v~~~yRl~~ 39 (53)
.+++ .+++++.+|||-+.
T Consensus 9 ~la~-~Gy~v~~~~~rGs~ 26 (213)
T PF00326_consen 9 LLAS-QGYAVLVPNYRGSG 26 (213)
T ss_dssp HHHT-TT-EEEEEE-TTSS
T ss_pred HHHh-CCEEEEEEcCCCCC
Confidence 4444 68999999999876
No 46
>PRK11126 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase; Provisional
Probab=35.05 E-value=26 Score=19.70 Aligned_cols=30 Identities=23% Similarity=0.433 Sum_probs=16.9
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||.+ ++...+.. ..+ .+.-++.+++|
T Consensus 5 vvllHG~~---~~~~~w~~~~~~l---~~~~vi~~D~~ 36 (242)
T PRK11126 5 LVFLHGLL---GSGQDWQPVGEAL---PDYPRLYIDLP 36 (242)
T ss_pred EEEECCCC---CChHHHHHHHHHc---CCCCEEEecCC
Confidence 58899975 23333321 122 24677777776
No 47
>PF15017 AF1Q: Drug resistance and apoptosis regulator
Probab=32.74 E-value=20 Score=18.68 Aligned_cols=9 Identities=22% Similarity=0.217 Sum_probs=7.0
Q ss_pred CCCCccCCC
Q psy2605 6 GESYEWNSG 14 (53)
Q Consensus 6 GGg~~~g~~ 14 (53)
||||++.++
T Consensus 72 ~gGWITPsN 80 (87)
T PF15017_consen 72 GGGWITPSN 80 (87)
T ss_pred CCccccchh
Confidence 789988765
No 48
>COG3150 Predicted esterase [General function prediction only]
Probab=32.49 E-value=20 Score=21.24 Aligned_cols=16 Identities=19% Similarity=0.592 Sum_probs=9.5
Q ss_pred CEEEeCCCCccCCCCCCCc
Q psy2605 1 MVFIHGESYEWNSGNAYDG 19 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~ 19 (53)
++|+|| |.. |+..+..
T Consensus 2 ilYlHG--FnS-SP~shka 17 (191)
T COG3150 2 ILYLHG--FNS-SPGSHKA 17 (191)
T ss_pred eEEEec--CCC-CcccHHH
Confidence 578887 444 5555543
No 49
>TIGR03343 biphenyl_bphD 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase. Members of this family are 2-hydroxy-6-oxo-6-phenylhexa-2,4-dienoate hydrolase, or HOPD hydrolase, the BphD protein of biphenyl degradation. BphD acts on the product of ring meta-cleavage by BphC. Many species carrying bphC and bphD are capable of degrading polychlorinated biphenyls as well as biphenyl itself.
Probab=32.07 E-value=30 Score=19.93 Aligned_cols=35 Identities=14% Similarity=0.214 Sum_probs=17.8
Q ss_pred CEEEeCCCCccCCCCC-CC-cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNA-YD-GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~-~~-~~~l~~~~~~v~v~~~yR 36 (53)
+|++||.+-....... +. ...+.+ .++-++.+++|
T Consensus 33 ivllHG~~~~~~~~~~~~~~~~~l~~-~~~~vi~~D~~ 69 (282)
T TIGR03343 33 VIMLHGGGPGAGGWSNYYRNIGPFVD-AGYRVILKDSP 69 (282)
T ss_pred EEEECCCCCchhhHHHHHHHHHHHHh-CCCEEEEECCC
Confidence 5789995422111111 11 122333 46888888887
No 50
>TIGR02240 PHA_depoly_arom poly(3-hydroxyalkanoate) depolymerase. This family consists of the polyhydroxyalkanoic acid (PHA) depolymerase of Pseudomonas oleovorans, Pseudomonas putida BM01, and related species. This enzyme is part of polyester storage and mobilization system as in many bacteria. However, species containing this enzyme are unusual in their capacity to produce aromatic polyesters when grown on carbon sources such as benzoic acid or phenylacetic acid.
Probab=32.04 E-value=46 Score=19.40 Aligned_cols=31 Identities=10% Similarity=0.138 Sum_probs=16.0
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ ++...+.. ..+.+ ..-++.+++|
T Consensus 28 lvllHG~~---~~~~~w~~~~~~L~~--~~~vi~~Dl~ 60 (276)
T TIGR02240 28 LLIFNGIG---ANLELVFPFIEALDP--DLEVIAFDVP 60 (276)
T ss_pred EEEEeCCC---cchHHHHHHHHHhcc--CceEEEECCC
Confidence 57888733 22233322 22332 4667777776
No 51
>PLN02442 S-formylglutathione hydrolase
Probab=31.08 E-value=41 Score=20.23 Aligned_cols=33 Identities=12% Similarity=0.239 Sum_probs=18.9
Q ss_pred CEEEeCCCCccCCCCC----CCcHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNA----YDGSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~----~~~~~l~~~~~~v~v~~~yR 36 (53)
++++||.+ ++... .....+....++++|.++..
T Consensus 50 v~~lHG~~---~~~~~~~~~~~~~~~~~~~g~~Vv~pd~~ 86 (283)
T PLN02442 50 LYWLSGLT---CTDENFIQKSGAQRAAAARGIALVAPDTS 86 (283)
T ss_pred EEEecCCC---cChHHHHHhhhHHHHHhhcCeEEEecCCC
Confidence 47899854 22221 11224444568999998864
No 52
>PLN02894 hydrolase, alpha/beta fold family protein
Probab=29.91 E-value=36 Score=21.63 Aligned_cols=31 Identities=26% Similarity=0.308 Sum_probs=18.2
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yR 36 (53)
+|++||.+. +...+. ...+++ ...++.+++|
T Consensus 108 vvllHG~~~---~~~~~~~~~~~L~~--~~~vi~~D~r 140 (402)
T PLN02894 108 LVMVHGYGA---SQGFFFRNFDALAS--RFRVIAIDQL 140 (402)
T ss_pred EEEECCCCc---chhHHHHHHHHHHh--CCEEEEECCC
Confidence 578898653 222221 233443 4788889988
No 53
>PRK03204 haloalkane dehalogenase; Provisional
Probab=29.43 E-value=38 Score=20.16 Aligned_cols=31 Identities=19% Similarity=0.321 Sum_probs=17.0
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||.+ .+...+.. ..+. ...-++.+++|
T Consensus 37 iv~lHG~~---~~~~~~~~~~~~l~--~~~~vi~~D~~ 69 (286)
T PRK03204 37 ILLCHGNP---TWSFLYRDIIVALR--DRFRCVAPDYL 69 (286)
T ss_pred EEEECCCC---ccHHHHHHHHHHHh--CCcEEEEECCC
Confidence 57889854 11112221 2233 24778888888
No 54
>PRK00870 haloalkane dehalogenase; Provisional
Probab=29.21 E-value=45 Score=19.75 Aligned_cols=32 Identities=25% Similarity=0.478 Sum_probs=18.3
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ ++...+.. ..+++ .+.-++.++.|
T Consensus 49 lvliHG~~---~~~~~w~~~~~~L~~-~gy~vi~~Dl~ 82 (302)
T PRK00870 49 VLLLHGEP---SWSYLYRKMIPILAA-AGHRVIAPDLI 82 (302)
T ss_pred EEEECCCC---CchhhHHHHHHHHHh-CCCEEEEECCC
Confidence 57889853 22233332 23443 36788888877
No 55
>PF13227 DUF4035: Protein of unknown function (DUF4035)
Probab=26.58 E-value=30 Score=16.41 Aligned_cols=8 Identities=25% Similarity=0.048 Sum_probs=6.1
Q ss_pred CCCCCCCC
Q psy2605 35 YRLGILGM 42 (53)
Q Consensus 35 yRl~~~Gf 42 (53)
||.+|||-
T Consensus 4 dr~~P~G~ 11 (53)
T PF13227_consen 4 DREQPFGD 11 (53)
T ss_pred cccCCcch
Confidence 78888874
No 56
>PF10503 Esterase_phd: Esterase PHB depolymerase
Probab=26.21 E-value=39 Score=20.11 Aligned_cols=31 Identities=29% Similarity=0.455 Sum_probs=20.4
Q ss_pred CEEEeCCCCccCCCCCC----CcHHHHcCCCeEEEEeC
Q psy2605 1 MVFIHGESYEWNSGNAY----DGSVLASYGGVVVVTVN 34 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~----~~~~l~~~~~~v~v~~~ 34 (53)
+|++||.+ ++++.+ .-..+++..+++++-++
T Consensus 19 Vv~LHG~~---~~a~~~~~~s~~~~lAd~~GfivvyP~ 53 (220)
T PF10503_consen 19 VVVLHGCG---QSAEDFAAGSGWNALADREGFIVVYPE 53 (220)
T ss_pred EEEeCCCC---CCHHHHHhhcCHHHHhhcCCeEEEccc
Confidence 58899976 333322 22457777889988766
No 57
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=25.95 E-value=82 Score=19.07 Aligned_cols=17 Identities=24% Similarity=0.411 Sum_probs=13.0
Q ss_pred EEEeCCCCccCCCCCCC
Q psy2605 2 VFIHGESYEWNSGNAYD 18 (53)
Q Consensus 2 v~~hGGg~~~g~~~~~~ 18 (53)
|-+|+||...|.....+
T Consensus 33 ~~L~~GGl~aG~r~pl~ 49 (212)
T COG3531 33 VVLHGGGLRAGNRRPLD 49 (212)
T ss_pred EEEecCCccCCCCCCCC
Confidence 56899999999665554
No 58
>COG3509 LpqC Poly(3-hydroxybutyrate) depolymerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=24.93 E-value=58 Score=20.81 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=20.4
Q ss_pred CEEEeCCCCccCCCCC--C--CcHHHHcCCCeEEEEe
Q psy2605 1 MVFIHGESYEWNSGNA--Y--DGSVLASYGGVVVVTV 33 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~--~--~~~~l~~~~~~v~v~~ 33 (53)
||.+||++ ++... . +-+.+++.++..|+-+
T Consensus 64 vv~LHG~~---~sgag~~~~sg~d~lAd~~gFlV~yP 97 (312)
T COG3509 64 VVVLHGSG---GSGAGQLHGTGWDALADREGFLVAYP 97 (312)
T ss_pred EEEEecCC---CChHHhhcccchhhhhcccCcEEECc
Confidence 58899976 44432 2 3357888888888866
No 59
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional
Probab=24.83 E-value=78 Score=19.11 Aligned_cols=31 Identities=29% Similarity=0.437 Sum_probs=16.2
Q ss_pred CEEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ ++...+. ...+.+ .+.++.+++|
T Consensus 134 vl~~HG~~---~~~~~~~~~~~~l~~--~~~v~~~d~~ 166 (371)
T PRK14875 134 VVLIHGFG---GDLNNWLFNHAALAA--GRPVIALDLP 166 (371)
T ss_pred EEEECCCC---CccchHHHHHHHHhc--CCEEEEEcCC
Confidence 47788643 2223222 223333 3777778776
No 60
>KOG3967|consensus
Probab=24.06 E-value=36 Score=21.18 Aligned_cols=13 Identities=31% Similarity=0.537 Sum_probs=10.4
Q ss_pred CEEEeCCCCccCC
Q psy2605 1 MVFIHGESYEWNS 13 (53)
Q Consensus 1 ~v~~hGGg~~~g~ 13 (53)
||.|||.|.+...
T Consensus 104 lVLIHGSGvVrAG 116 (297)
T KOG3967|consen 104 LVLIHGSGVVRAG 116 (297)
T ss_pred EEEEecCceEecc
Confidence 5899999987654
No 61
>PLN02679 hydrolase, alpha/beta fold family protein
Probab=23.99 E-value=57 Score=20.24 Aligned_cols=31 Identities=23% Similarity=0.342 Sum_probs=17.2
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ ++...+.. ..+++ +.-++.+++|
T Consensus 91 lvllHG~~---~~~~~w~~~~~~L~~--~~~via~Dl~ 123 (360)
T PLN02679 91 VLLVHGFG---ASIPHWRRNIGVLAK--NYTVYAIDLL 123 (360)
T ss_pred EEEECCCC---CCHHHHHHHHHHHhc--CCEEEEECCC
Confidence 46788754 22233332 23333 5778888887
No 62
>PF03283 PAE: Pectinacetylesterase
Probab=23.71 E-value=39 Score=21.62 Aligned_cols=13 Identities=23% Similarity=1.048 Sum_probs=11.2
Q ss_pred CEEEeCCCCccCC
Q psy2605 1 MVFIHGESYEWNS 13 (53)
Q Consensus 1 ~v~~hGGg~~~g~ 13 (53)
+||+-||||+...
T Consensus 53 li~leGGG~C~~~ 65 (361)
T PF03283_consen 53 LIFLEGGGWCWDA 65 (361)
T ss_pred EEEeccchhcCCh
Confidence 5899999999874
No 63
>PLN02211 methyl indole-3-acetate methyltransferase
Probab=23.27 E-value=97 Score=18.41 Aligned_cols=32 Identities=22% Similarity=0.440 Sum_probs=18.9
Q ss_pred CEEEeCCCCccCCCCCCCc--HHHHcCCCeEEEEeCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYR 36 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~--~~l~~~~~~v~v~~~yR 36 (53)
+|++||-+ ++...+.. ..+.+ .+.-++.+++|
T Consensus 21 vvliHG~~---~~~~~w~~~~~~L~~-~g~~vi~~dl~ 54 (273)
T PLN02211 21 FVLIHGIS---GGSWCWYKIRCLMEN-SGYKVTCIDLK 54 (273)
T ss_pred EEEECCCC---CCcCcHHHHHHHHHh-CCCEEEEeccc
Confidence 58999965 23344432 23443 46777777776
No 64
>KOG4586|consensus
Probab=22.99 E-value=45 Score=18.98 Aligned_cols=13 Identities=31% Similarity=0.511 Sum_probs=9.6
Q ss_pred eCCCCCCCCCCCC
Q psy2605 33 VNYRLGILGMPLL 45 (53)
Q Consensus 33 ~~yRl~~~Gf~~~ 45 (53)
+..|.|||||-+.
T Consensus 100 iEvrDGpfGFSPl 112 (156)
T KOG4586|consen 100 IEVRDGPFGFSPL 112 (156)
T ss_pred ccccCCCcCccHH
Confidence 4578999999543
No 65
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=22.71 E-value=58 Score=14.37 Aligned_cols=12 Identities=17% Similarity=0.058 Sum_probs=8.4
Q ss_pred CCCCCCCCCCcC
Q psy2605 36 RLGILGMPLLMS 47 (53)
Q Consensus 36 Rl~~~Gf~~~~~ 47 (53)
.+=+|||++...
T Consensus 17 sLFiFGflsnDP 28 (38)
T PRK02655 17 GLFVFGFLSSDP 28 (38)
T ss_pred HHHHcccCCCCC
Confidence 355789998853
No 66
>PF04443 LuxE: Acyl-protein synthetase, LuxE; InterPro: IPR007534 LuxE is an acyl-protein synthetase found in bioluminescent bacteria. LuxE catalyses the formation of an acyl-protein thiolester from a fatty acid and a protein. This is the second step in the bioluminescent fatty acid reduction system, which converts tetradecanoic acid to the aldehyde substrate of the luciferase-catalysed bioluminescence reaction []. A conserved cysteine found at position 364 in Photobacterium phosphoreum LuxE (Q52100 from SWISSPROT) is thought to be acylated during the transfer of the acyl group from the synthetase subunit to the reductase. The C-terminal of the synthetase is though to act as a flexible arm to transfer acyl groups between the sites of activation and reduction []. A LuxE domain is also found in the Vibrio cholerae RBFN protein (Q06961 from SWISSPROT), which is involved in the biosynthesis of the O-antigen component 3-deoxy-L-glycero-tetronic acid. This entry represents the LuxE domain, which is found in archaeal and bacterial proteins.; GO: 0047474 long-chain fatty acid luciferin component ligase activity, 0008218 bioluminescence
Probab=22.56 E-value=1.1e+02 Score=19.69 Aligned_cols=16 Identities=25% Similarity=0.457 Sum_probs=11.6
Q ss_pred EEEeCCCCccCCCCCC
Q psy2605 2 VFIHGESYEWNSGNAY 17 (53)
Q Consensus 2 v~~hGGg~~~g~~~~~ 17 (53)
+.+|||||..-.....
T Consensus 224 ~vi~~GGwK~~~~e~v 239 (365)
T PF04443_consen 224 IVIHGGGWKGRRKEAV 239 (365)
T ss_pred EEEeCCCCCccccCcc
Confidence 5789999987655443
No 67
>COG2819 Predicted hydrolase of the alpha/beta superfamily [General function prediction only]
Probab=22.17 E-value=67 Score=20.00 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=20.0
Q ss_pred CEEEeCCCCccCCCCCCCcHHHHcCCCeEEEEeCCCC
Q psy2605 1 MVFIHGESYEWNSGNAYDGSVLASYGGVVVVTVNYRL 37 (53)
Q Consensus 1 ~v~~hGGg~~~g~~~~~~~~~l~~~~~~v~v~~~yRl 37 (53)
|||+|-|.-..+.....-...+++....+.|.+.|+.
T Consensus 41 VlY~lDGn~vf~~~~~~~~~~~~~~~~~~iv~iGye~ 77 (264)
T COG2819 41 VLYMLDGNAVFNALTEIMLRILADLPPPVIVGIGYET 77 (264)
T ss_pred EEEEecchhhhchHHHHhhhhhhcCCCceEEEecccc
Confidence 4677777655554443333344443345566666665
No 68
>PHA02857 monoglyceride lipase; Provisional
Probab=21.32 E-value=93 Score=17.99 Aligned_cols=31 Identities=19% Similarity=0.388 Sum_probs=18.3
Q ss_pred EEEeCCCCccCCCCCCC--cHHHHcCCCeEEEEeCCC
Q psy2605 2 VFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYR 36 (53)
Q Consensus 2 v~~hGGg~~~g~~~~~~--~~~l~~~~~~v~v~~~yR 36 (53)
+++||-+ .+...+. ...+++ .++.++.+++|
T Consensus 29 ~llHG~~---~~~~~~~~~~~~l~~-~g~~via~D~~ 61 (276)
T PHA02857 29 FISHGAG---EHSGRYEELAENISS-LGILVFSHDHI 61 (276)
T ss_pred EEeCCCc---cccchHHHHHHHHHh-CCCEEEEccCC
Confidence 4459854 2333343 234554 47888888888
No 69
>COG2411 Uncharacterized conserved protein [Function unknown]
Probab=21.00 E-value=33 Score=20.31 Aligned_cols=14 Identities=29% Similarity=0.563 Sum_probs=12.1
Q ss_pred EEEeCCCCccCCCC
Q psy2605 2 VFIHGESYEWNSGN 15 (53)
Q Consensus 2 v~~hGGg~~~g~~~ 15 (53)
|+||++|...|.+.
T Consensus 41 VyIh~~g~i~gkAk 54 (188)
T COG2411 41 VYIHSGGYIIGKAK 54 (188)
T ss_pred EEEEECCEEEEEEE
Confidence 89999999998764
No 70
>KOG2542|consensus
Probab=20.67 E-value=64 Score=21.67 Aligned_cols=16 Identities=25% Similarity=0.515 Sum_probs=11.3
Q ss_pred eEEEEeCCCCCCCCCCCC
Q psy2605 28 VVVVTVNYRLGILGMPLL 45 (53)
Q Consensus 28 ~v~v~~~yRl~~~Gf~~~ 45 (53)
+.-.+|+| ||||||--
T Consensus 179 IlGlTIDY--GPFgFLD~ 194 (500)
T KOG2542|consen 179 ILGLTIDY--GPFGFLDR 194 (500)
T ss_pred eeeeeecc--CCcccccc
Confidence 33456776 89999854
No 71
>TIGR03101 hydr2_PEP hydrolase, ortholog 2, exosortase system type 1 associated. This group of proteins are members of the alpha/beta hydrolase superfamily. These proteins are generally found in genomes containing the exosortase/PEP-CTERM protein expoert system, specifically the type 1 variant of this system described by the Genome Property GenProp0652. When found in this context they are invariably present in the vicinity of a second, relatively unrelated enzyme (ortholog 1, TIGR03100) of the same superfamily.
Probab=20.63 E-value=81 Score=19.21 Aligned_cols=16 Identities=25% Similarity=0.416 Sum_probs=11.8
Q ss_pred HHHcCCCeEEEEeCCCC
Q psy2605 21 VLASYGGVVVVTVNYRL 37 (53)
Q Consensus 21 ~l~~~~~~v~v~~~yRl 37 (53)
.+++ .++.++.++||=
T Consensus 51 ~La~-~Gy~Vl~~Dl~G 66 (266)
T TIGR03101 51 AFAA-GGFGVLQIDLYG 66 (266)
T ss_pred HHHH-CCCEEEEECCCC
Confidence 3443 589999999984
Done!