RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2605
(53 letters)
>gnl|CDD|215741 pfam00135, COesterase, Carboxylesterase family.
Length = 510
Score = 65.0 bits (159), Expect = 1e-14
Identities = 23/43 (53%), Positives = 29/43 (67%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSG--NAYDGSVLASYGGVVVVTVNYRLGILG 41
MV+IHG ++ S + YDG LA+ VVVVT+NYRLG LG
Sbjct: 103 MVWIHGGGFQSGSASLDDYDGPDLAASEDVVVVTINYRLGALG 145
>gnl|CDD|225181 COG2272, PnbA, Carboxylesterase type B [Lipid metabolism].
Length = 491
Score = 60.1 bits (146), Expect = 6e-13
Identities = 27/43 (62%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSGNA--YDGSVLASYGGVVVVTVNYRLGILG 41
MV+IHG Y SG+ YDGS LA+ G VVVV+VNYRLG LG
Sbjct: 97 MVYIHGGGYIMGSGSEPLYDGSALAARGDVVVVSVNYRLGALG 139
>gnl|CDD|238191 cd00312, Esterase_lipase, Esterases and lipases (includes fungal
lipases, cholinesterases, etc.) These enzymes act on
carboxylic esters (EC: 3.1.1.-). The catalytic apparatus
involves three residues (catalytic triad): a serine, a
glutamate or aspartate and a histidine.These catalytic
residues are responsible for the nucleophilic attack on
the carbonyl carbon atom of the ester bond. In contrast
with other alpha/beta hydrolase fold family members,
p-nitrobenzyl esterase and acetylcholine esterase have a
Glu instead of Asp at the active site carboxylate.
Length = 493
Score = 50.4 bits (121), Expect = 2e-09
Identities = 22/42 (52%), Positives = 30/42 (71%), Gaps = 1/42 (2%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASYG-GVVVVTVNYRLGILG 41
MV+IHG + + SG+ Y G LA G V+VV++NYRLG+LG
Sbjct: 98 MVWIHGGGFMFGSGSLYPGDGLAREGDNVIVVSINYRLGVLG 139
>gnl|CDD|223730 COG0657, Aes, Esterase/lipase [Lipid metabolism].
Length = 312
Score = 31.8 bits (72), Expect = 0.007
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYE--WNSGNAYDGSVLASYGGVVVVTVNYRL 37
++++HG + + + LA+ G VVV+V+YRL
Sbjct: 82 VLYLHGGGWVLGSLRTHDALVARLAAAAGAVVVSVDYRL 120
>gnl|CDD|219611 pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This
catalytic domain is found in a very wide range of
enzymes.
Length = 207
Score = 29.5 bits (67), Expect = 0.040
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYRL 37
+V+ HG + S + +D LA+ G VVV+V+YRL
Sbjct: 1 LVYFHGGGFVLGSADTHDRLCRRLAAAAGAVVVSVDYRL 39
>gnl|CDD|236660 PRK10162, PRK10162, acetyl esterase; Provisional.
Length = 318
Score = 27.4 bits (61), Expect = 0.23
Identities = 11/39 (28%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRL 37
+ ++HG + + + +D +LASY G V+ ++Y L
Sbjct: 84 LFYLHGGGFILGNLDTHDRIMRLLASYSGCTVIGIDYTL 122
>gnl|CDD|236995 PRK11824, PRK11824, polynucleotide phosphorylase/polyadenylase;
Provisional.
Length = 693
Score = 26.9 bits (61), Expect = 0.33
Identities = 10/17 (58%), Positives = 13/17 (76%), Gaps = 1/17 (5%)
Query: 18 DGSVLASYGG-VVVVTV 33
+G+VL YG VV+VTV
Sbjct: 28 NGAVLVRYGDTVVLVTV 44
>gnl|CDD|131384 TIGR02331, rib_alpha, Rib/alpha/Esp surface antigen repeat.
Sequences in this family are tandem repeats of about 79
amino acids, present in up to 14 copies in a protein
and highly identical, even at the DNA level, within
each protein. Sequences with these repeats are found in
the Rib and alpha surface antigens of group B
Streptococcus, Esp of Enterococcus faecalis, and
related proteins of Lactobacillus. The repeat lacks Cys
residues. Most members of this protein family also have
the cell wall anchor motif LPXTG shared by many
staphyloccal and streptococcal surface antigens.
Length = 80
Score = 26.4 bits (58), Expect = 0.40
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 6 GESYEWNSGNAYDGSVLASYGGVVVVT 32
G +Y W + N D + VVVVT
Sbjct: 25 GTTYVWKTVNTPDTNTPGDKPAVVVVT 51
>gnl|CDD|234271 TIGR03591, polynuc_phos, polyribonucleotide
nucleotidyltransferase. Members of this protein family
are polyribonucleotide nucleotidyltransferase, also
called polynucleotide phosphorylase. Some members have
been shown also to have additional functions as
guanosine pentaphosphate synthetase and as poly(A)
polymerase (see model TIGR02696 for an exception clade,
within this family) [Transcription, Degradation of
RNA].
Length = 684
Score = 26.7 bits (60), Expect = 0.49
Identities = 10/18 (55%), Positives = 13/18 (72%), Gaps = 1/18 (5%)
Query: 18 DGSVLASYGG-VVVVTVN 34
DG+V+ YG VV+VTV
Sbjct: 19 DGAVVVRYGDTVVLVTVV 36
>gnl|CDD|206768 cd11363, RNase_PH_PNPase_1, Polyribonucleotide
nucleotidyltransferase, repeat 1. Polyribonucleotide
nucleotidyltransferase (PNPase) is a member of the
RNase_PH family, named after the bacterial Ribonuclease
PH, a 3'-5' exoribonuclease. Structurally, all members
of this family form hexameric rings. In the case of
PNPase the complex is a trimer, since each monomer
contains two tandem copies of the domain. PNPase is
involved in mRNA degradation in a 3'-5' direction and
in quality control of ribosomal RNA precursors. It is
part of the RNA degradosome complex and binds to the
scaffolding domain of the endoribonuclease RNase E.
Length = 229
Score = 26.3 bits (59), Expect = 0.59
Identities = 10/17 (58%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 18 DGSVLASYGG-VVVVTV 33
DGSV+ YG VV+VT
Sbjct: 24 DGSVVVQYGDTVVLVTA 40
>gnl|CDD|183401 PRK12283, PRK12283, tryptophanyl-tRNA synthetase; Reviewed.
Length = 398
Score = 26.1 bits (58), Expect = 0.73
Identities = 9/13 (69%), Positives = 9/13 (69%)
Query: 38 GILGMPLLMSIDI 50
G LG PLL S DI
Sbjct: 126 GFLGYPLLQSADI 138
>gnl|CDD|224106 COG1185, Pnp, Polyribonucleotide nucleotidyltransferase
(polynucleotide phosphorylase) [Translation, ribosomal
structure and biogenesis].
Length = 692
Score = 24.8 bits (55), Expect = 2.2
Identities = 9/18 (50%), Positives = 11/18 (61%), Gaps = 1/18 (5%)
Query: 18 DGSVLASYGGVVV-VTVN 34
+G+VL YG VV TV
Sbjct: 28 NGAVLVRYGDTVVLATVV 45
>gnl|CDD|236560 PRK09549, mtnW, 2,3-diketo-5-methylthiopentyl-1-phosphate enolase;
Reviewed.
Length = 407
Score = 24.2 bits (53), Expect = 3.8
Identities = 11/25 (44%), Positives = 13/25 (52%), Gaps = 7/25 (28%)
Query: 36 RLGILGMPLLMSI-------DIGYL 53
LG+ PLLMSI D+ YL
Sbjct: 128 LLGVHDRPLLMSIFKGVIGRDLDYL 152
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.143 0.436
Gapped
Lambda K H
0.267 0.0790 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 2,799,354
Number of extensions: 185981
Number of successful extensions: 217
Number of sequences better than 10.0: 1
Number of HSP's gapped: 214
Number of HSP's successfully gapped: 19
Length of query: 53
Length of database: 10,937,602
Length adjustment: 25
Effective length of query: 28
Effective length of database: 9,828,752
Effective search space: 275205056
Effective search space used: 275205056
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (24.1 bits)