RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2605
(53 letters)
>2h7c_A Liver carboxylesterase 1; enzyme, cholesteryl esterase, hydrolase;
HET: NAG NDG SIA COA; 2.00A {Homo sapiens} SCOP:
c.69.1.1 PDB: 2dqy_A* 2dr0_A* 2dqz_A* 1mx1_A* 1mx5_A*
1mx9_A* 4ab1_A* 1ya4_A* 1yah_A* 1yaj_A* 1ya8_A* 2hrr_A*
2hrq_A* 3k9b_A* 1k4y_A*
Length = 542
Score = 81.7 bits (202), Expect = 9e-21
Identities = 21/41 (51%), Positives = 27/41 (65%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASYGGVVVVTVNYRLGILG 41
MV+IHG + + YDG LA++ VVVVT+ YRLGI G
Sbjct: 118 MVWIHGGGLMVGAASTYDGLALAAHENVVVVTIQYRLGIWG 158
>1dx4_A ACHE, acetylcholinesterase; hydrolase, serine esterase, synapse,
membrane, nerve, muscle neurotransmitter degradation,
glycoprotein; HET: NAG MAN BMA 760; 2.70A {Drosophila
melanogaster} SCOP: c.69.1.1 PDB: 1qo9_A* 1qon_A*
Length = 585
Score = 79.5 bits (196), Expect = 7e-20
Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSGNA--YDGSVLASYGGVVVVTVNYRLGILG 41
+++I+G + S Y+ ++A+ G V+V + YR+G G
Sbjct: 144 LIWIYGGGFMTGSATLDIYNADIMAAVGNVIVASFQYRVGAFG 186
>2ha2_A ACHE, acetylcholinesterase; hydrolase fold, serine esterase, homod
glycosylated protein, hydrolase; HET: NAG FUC SCK SCU
P6G; 2.05A {Mus musculus} SCOP: c.69.1.1 PDB: 1j07_A*
1mah_A* 1j06_A* 1n5r_A* 2gyv_A* 2gyw_A* 2h9y_A* 2ha0_A*
2gyu_A* 2ha3_A* 2wls_A* 4a23_A* 2c0q_A* 2jey_A* 2jgm_A*
2whr_A* 2c0p_A* 1ku6_A* 1q84_A* 1q83_A* ...
Length = 543
Score = 78.2 bits (193), Expect = 2e-19
Identities = 15/43 (34%), Positives = 26/43 (60%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSGN--AYDGSVLASYGGVVVVTVNYRLGILG 41
+++I+G + + + YDG LA G V+V++NYR+G G
Sbjct: 115 LIWIYGGGFYSGAASLDVYDGRFLAQVEGAVLVSMNYRVGTFG 157
>1p0i_A Cholinesterase; serine hydrolase, butyrate, hydrolase; HET: NAG FUC
MES; 2.00A {Homo sapiens} SCOP: c.69.1.1 PDB: 1p0m_A*
1p0p_A* 1p0q_A* 1xlu_A* 1xlv_A* 1xlw_A* 2wsl_A* 2pm8_A*
3djy_A* 3dkk_A* 2wij_A* 2wif_A* 2wik_A* 2y1k_A* 2j4c_A*
2xmb_A* 2xmc_A* 2xmd_A* 2xmg_A* 2wig_A* ...
Length = 529
Score = 77.8 bits (192), Expect = 3e-19
Identities = 16/43 (37%), Positives = 28/43 (65%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSGN--AYDGSVLASYGGVVVVTVNYRLGILG 41
+++I+G ++ + + YDG LA V+VV++NYR+G LG
Sbjct: 110 LIWIYGGGFQTGTSSLHVYDGKFLARVERVIVVSMNYRVGALG 152
>1ea5_A ACHE, acetylcholinesterase; hydrolase, serine hydrolase,
neurotransmitter cleavage, catalytic triad, alpha/beta
hydrolase; HET: NAG; 1.80A {Torpedo californica} SCOP:
c.69.1.1 PDB: 1ax9_A* 1amn_A* 1cfj_A* 1fss_A* 1gpk_A*
1gpn_A* 1oce_A* 1qid_A 1qie_A 1qif_A 1qig_A 1qih_A
1qii_A 1qij_A 1qik_A 1qim_A 1qti_A* 1vot_A* 1vxo_A*
1vxr_A* ...
Length = 537
Score = 77.4 bits (191), Expect = 3e-19
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSGNA--YDGSVLASYGGVVVVTVNYRLGILG 41
MV+I+G + S Y+G LA VV+V+++YR+G G
Sbjct: 112 MVWIYGGGFYSGSSTLDVYNGKYLAYTEEVVLVSLSYRVGAFG 154
>3bix_A Neuroligin-1, neuroligin I; esterase domain, alpha-beta hydrolase,
cell adhesion, cell J glycoprotein, membrane,
postsynaptic cell membrane; HET: NAG; 1.80A {Rattus
norvegicus} PDB: 3biw_A* 3b3q_A* 3be8_A* 2wqz_A* 2xb6_A*
2vh8_A 3bl8_A*
Length = 574
Score = 76.7 bits (189), Expect = 5e-19
Identities = 30/42 (71%), Positives = 35/42 (83%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASYGGVVVVTVNYRLGILGM 42
MV+IHG SY +GN YDGSVLASYG V+V+TVNYRLG+LG
Sbjct: 134 MVYIHGGSYMEGTGNLYDGSVLASYGNVIVITVNYRLGVLGF 175
>2bce_A Cholesterol esterase; hydrolase, serine esterase, lipase; 1.60A
{Bos taurus} SCOP: c.69.1.1 PDB: 1akn_A* 1aql_A* 1f6w_A
1jmy_A
Length = 579
Score = 73.9 bits (182), Expect = 6e-18
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 8/49 (16%)
Query: 1 MVFIHGESYEWNSGNA--------YDGSVLASYGGVVVVTVNYRLGILG 41
M++I+G ++ + YDG +A+ G V+VVT NYR+G LG
Sbjct: 101 MIWIYGGAFLMGASQGANFLSNYLYDGEEIATRGNVIVVTFNYRVGPLG 149
>1qe3_A PNB esterase, para-nitrobenzyl esterase; alpha-beta hydrolase
directed evolution; 1.50A {Bacillus subtilis} SCOP:
c.69.1.1 PDB: 1c7j_A 1c7i_A
Length = 489
Score = 72.3 bits (178), Expect = 2e-17
Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSGNA--YDGSVLASYGGVVVVTVNYRLGILG 41
MV+IHG ++ +G+ YDGS LA+ G V+VVT+NYRLG G
Sbjct: 100 MVWIHGGAFYLGAGSEPLYDGSKLAAQGEVIVVTLNYRLGPFG 142
>2ogt_A Thermostable carboxylesterase EST50; alpha/beta hydrolase,
hydrolase; 1.58A {Geobacillus stearothermophilus} PDB:
2ogs_A
Length = 498
Score = 71.9 bits (177), Expect = 2e-17
Identities = 19/43 (44%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSGNA--YDGSVLASYGGVVVVTVNYRLGILG 41
+ +IHG ++ + SG++ YDG+ A +G VVVVT+NYR+ + G
Sbjct: 102 LFWIHGGAFLFGSGSSPWYDGTAFAKHGDVVVVTINYRMNVFG 144
>1ukc_A ESTA, esterase; fungi, A/B hydrolase fold, acetylcholinesterase, H;
HET: NAG MAN; 2.10A {Aspergillus niger} SCOP: c.69.1.17
Length = 522
Score = 64.7 bits (158), Expect = 9e-15
Identities = 19/43 (44%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Query: 1 MVFIHGESYEWNSGNAYDGS--VLASYGGVVVVTVNYRLGILG 41
+FI G Y NS Y+G+ + AS +V VT NYR+G LG
Sbjct: 105 WLFIQGGGYAENSNANYNGTQVIQASDDVIVFVTFNYRVGALG 147
>2fj0_A JuvenIle hormone esterase; manduca sexta, alpha-beta hydrolase;
HET: TFC; 2.70A {Trichoplusia NI}
Length = 551
Score = 61.2 bits (149), Expect = 2e-13
Identities = 16/42 (38%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 1 MVFIHGESYEWNSGNA-YDGSVLASYGGVVVVTVNYRLGILG 41
+VFIHG + + SG++ G V+V+T NYRL + G
Sbjct: 118 LVFIHGGGFAFGSGDSDLHGPEYLVSKDVIVITFNYRLNVYG 159
>1thg_A Lipase; hydrolase(carboxylic esterase); HET: NAG NDG; 1.80A
{Galactomyces geotrichum} SCOP: c.69.1.17
Length = 544
Score = 60.9 bits (148), Expect = 2e-13
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASYG-----GVVVVTVNYRLGILG 41
MV+I+G ++ + S AY G+ VV V++NYR G G
Sbjct: 125 MVWIYGGAFVYGSSAAYPGNSYVKESINMGQPVVFVSINYRTGPFG 170
>1llf_A Lipase 3; candida cylindracea cholesterol esterase, sterol ester
acylh hydrolase; HET: NAG F23; 1.40A {Candida
cylindracea} SCOP: c.69.1.17 PDB: 1cle_A* 1lpm_A*
1lpn_A* 1lpo_A* 1lpp_A* 1lps_A* 1crl_A* 1trh_A* 3rar_A*
1gz7_A*
Length = 534
Score = 59.4 bits (144), Expect = 8e-13
Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASYG-----GVVVVTVNYRLGILG 41
M++I G +E S + + + + ++ V VNYR+ G
Sbjct: 117 MLWIFGGGFEIGSPTIFPPAQMVTKSVLMGKPIIHVAVNYRVASWG 162
>3ebl_A Gibberellin receptor GID1; alpha/beta hydrolase, lipase,
gibberellin signaling pathway, hydrolase, nucleus,
hydrolase receptor; HET: GA4; 1.90A {Oryza sativa subsp}
PDB: 3ed1_A*
Length = 365
Score = 35.1 bits (81), Expect = 3e-04
Identities = 13/43 (30%), Positives = 15/43 (34%), Gaps = 10/43 (23%)
Query: 2 VFIHG-----ESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+F HG S YD VVV+VNYR
Sbjct: 116 IFFHGGSFVHSSASST---IYDSLCRRFVKLSKGVVVSVNYRR 155
>2qru_A Uncharacterized protein; alpha/beta-hydrolase, structural GENO
PSI-2, protein structure initiative, midwest center for
STR genomics, MCSG; 1.65A {Enterococcus faecalis}
Length = 274
Score = 34.4 bits (79), Expect = 5e-04
Identities = 8/39 (20%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+V++HG + + + + L + G V+ ++Y L
Sbjct: 30 VVYLHGGGMIYGTKSDLPEELKELFTSNGYTVLALDYLL 68
>4e15_A Kynurenine formamidase; alpha/beta hydrolase fold,
hydrolase-hydrolase inhibitor COM; HET: SEB; 1.50A
{Drosophila melanogaster} PDB: 4e14_A* 4e11_A
Length = 303
Score = 34.5 bits (79), Expect = 5e-04
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 5/40 (12%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASY---GGVVVVTVNYRL 37
VF+HG W + + G V ++Y L
Sbjct: 85 FVFVHGGY--WQEMDMSMSCSIVGPLVRRGYRVAVMDYNL 122
>2o7r_A CXE carboxylesterase; alpha/beta hydrolase; 1.40A {Actinidia
eriantha} PDB: 2o7v_A
Length = 338
Score = 34.3 bits (79), Expect = 5e-04
Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 10/44 (22%)
Query: 1 MVFIHG-----ESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+V+ HG S + +A + GVV+ +V+YRL
Sbjct: 86 VVYFHGGGFILFSAAST---IFHDFCCEMAVHAGVVIASVDYRL 126
>2zsh_A Probable gibberellin receptor GID1L1; plant hormone receptor,
gibberellin, gibberellin signaling pathway, hydrolase,
nucleus, receptor, developmental protein; HET: GA3;
1.80A {Arabidopsis thaliana} PDB: 2zsi_A*
Length = 351
Score = 34.3 bits (79), Expect = 6e-04
Identities = 14/44 (31%), Positives = 17/44 (38%), Gaps = 10/44 (22%)
Query: 1 MVFIHG-----ESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
++F HG S YD L VVV+VNYR
Sbjct: 116 ILFFHGGSFAHSSANSA---IYDTLCRRLVGLCKCVVVSVNYRR 156
>3k6k_A Esterase/lipase; alpha/beta hydrolase fold; 2.20A {Uncultured
bacterium} PDB: 3dnm_A
Length = 322
Score = 33.8 bits (78), Expect = 8e-04
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYRL 37
+++ HG Y S + + + LA + +++YRL
Sbjct: 83 ILYFHGGGYISGSPSTHLVLTTQLAKQSSATLWSLDYRL 121
>3fak_A Esterase/lipase, ESTE5; HSL, hydrolase; 1.90A {Uncultured
bacterium} PDB: 3g9t_A 3g9u_A 3g9z_A 3h17_A* 3h18_A*
3h19_A 3h1a_A 3h1b_A 3l1h_A 3l1i_A 3l1j_A 3v9a_A
Length = 322
Score = 33.4 bits (77), Expect = 0.001
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
++++HG Y S N + V ++ + ++YRL
Sbjct: 83 ILYLHGGGYVMGSINTHRSMVGEISRASQAAALLLDYRL 121
>3d7r_A Esterase; alpha/beta fold, hydrolase; 2.01A {Staphylococcus aureus
subsp}
Length = 326
Score = 33.5 bits (77), Expect = 0.001
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDG--SVLASYGGVVVVTVNYRL 37
+++IHG + + VV Y
Sbjct: 99 ILYIHGGFNALQPSPFHWRLLDKITLSTLYEVVLPIYPK 137
>2wir_A Pesta, alpha/beta hydrolase fold-3 domain protein; tertiary
alcohol; 2.00A {Pyrobaculum calidifontis} PDB: 2yh2_A
3zwq_A
Length = 313
Score = 33.0 bits (76), Expect = 0.002
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+V+ HG + S +D LA+ G VVV+V+YRL
Sbjct: 79 VVYYHGGGFVLGSVETHDHVCRRLANLSGAVVVSVDYRL 117
>1jji_A Carboxylesterase; alpha-beta hydrolase fold, hydrolase; HET: EPE;
2.20A {Archaeoglobus fulgidus} SCOP: c.69.1.2
Length = 311
Score = 32.2 bits (74), Expect = 0.003
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+V+ HG + S ++D +A VV+V+YRL
Sbjct: 82 LVYYHGGGFVICSIESHDALCRRIARLSNSTVVSVDYRL 120
>3ain_A 303AA long hypothetical esterase; carboxylesterase, thermophilic,
dimer, archaea, R267G, hydro; 1.65A {Sulfolobus
tokodaii} PDB: 3aio_A 3ail_A 3aik_A 3aim_A
Length = 323
Score = 32.2 bits (74), Expect = 0.003
Identities = 10/39 (25%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+V+ HG + +YD + + V ++V+YRL
Sbjct: 93 LVYYHGGGFVLGDIESYDPLCRAITNSCQCVTISVDYRL 131
>3qh4_A Esterase LIPW; structural genomics, ssgcid, seattle structural
genomics CEN infectious disease, tuberculosis, O LIPW,
heroin esterase; 1.75A {Mycobacterium marinum}
Length = 317
Score = 31.9 bits (73), Expect = 0.004
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+V+ H + + + LA VV+V+YRL
Sbjct: 88 VVYCHAGGFALGNLDTDHRQCLELARRARCAVVSVDYRL 126
>2hm7_A Carboxylesterase; alpha/beta hydrolase fold, hydrolase; 2.00A
{Alicyclobacillus acidocaldarius} PDB: 1evq_A* 1u4n_A
1qz3_A
Length = 310
Score = 31.8 bits (73), Expect = 0.004
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+V+ HG S+ +D LA G VV +V+YRL
Sbjct: 77 LVYYHGGSWVVGDLETHDPVCRVLAKDGRAVVFSVDYRL 115
>2c7b_A Carboxylesterase, ESTE1; carboxyesterase, thermophilic enzyme,
hydrolase, HSL, alpha/beta hydrolase fold; 2.3A
{Uncultured archaeon}
Length = 311
Score = 31.8 bits (73), Expect = 0.004
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+++ HG + + S +D L+ VVV+V+YRL
Sbjct: 76 VLYYHGGGFVFGSIETHDHICRRLSRLSDSVVVSVDYRL 114
>1lzl_A Heroin esterase; alpha/beta hydrolase; 1.30A {Rhodococcus SP} SCOP:
c.69.1.2 PDB: 1lzk_A
Length = 323
Score = 31.5 bits (72), Expect = 0.006
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 1 MVFIHGESYEWNSGNAYDGSV--LASYGGVVVVTVNYRL 37
+++IHG + + + D +A G V V YRL
Sbjct: 82 LLWIHGGGFAIGTAESSDPFCVEVARELGFAVANVEYRL 120
>3ga7_A Acetyl esterase; phosphoserine, IDP00896, hydrolase, serine
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: SEP MSE; 1.55A {Salmonella
typhimurium}
Length = 326
Score = 31.1 bits (71), Expect = 0.008
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 6/41 (14%)
Query: 1 MVFIHGESYEWNSGNA--YDGSV--LASYGGVVVVTVNYRL 37
+ ++HG + GN +D + LA Y G V+ ++Y L
Sbjct: 90 LYYLHGGG--FILGNLDTHDRIMRLLARYTGCTVIGIDYSL 128
>1vkh_A Putative serine hydrolase; structural genomics, joint center
structural genomics, JCSG, protein structure
initiative, PS hydrolase; HET: MSE; 1.85A
{Saccharomyces cerevisiae} SCOP: c.69.1.32
Length = 273
Score = 30.4 bits (68), Expect = 0.013
Identities = 10/44 (22%), Positives = 19/44 (43%), Gaps = 7/44 (15%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASY-------GGVVVVTVNYRL 37
+++IHG ++ D + LA+ V ++ YRL
Sbjct: 44 VIYIHGGAWNDPENTPNDFNQLANTIKSMDTESTVCQYSIEYRL 87
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 28.5 bits (63), Expect = 0.065
Identities = 13/43 (30%), Positives = 16/43 (37%), Gaps = 19/43 (44%)
Query: 5 H--GESYEWNSGNAYDGSVLASYGGV-----VVVTVNYRLGIL 40
H GE Y + LAS V +V V YR G+
Sbjct: 1762 HSLGE---------Y--AALASLADVMSIESLVEVVFYR-GMT 1792
>1jkm_A Brefeldin A esterase; serine hydrolase, degradation of brefeldin A,
alpha/beta hydrolase family; 1.85A {Bacillus subtilis}
SCOP: c.69.1.2
Length = 361
Score = 27.8 bits (62), Expect = 0.11
Identities = 11/47 (23%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 1 MVFIHGESYEWNSGNA--YDGSV--LASYGGVVVVTVNYRLGILGMP 43
+V+ HG + + + LA+ G VVV V++R
Sbjct: 112 LVYTHGGGMTILTTDNRVHRRWCTDLAA-AGSVVVMVDFRNAWTAEG 157
>3h04_A Uncharacterized protein; protein with unknown function,
structural genomics, MCSG, PS protein structure
initiative; 1.90A {Staphylococcus aureus subsp}
Length = 275
Score = 27.1 bits (60), Expect = 0.19
Identities = 8/38 (21%), Positives = 16/38 (42%), Gaps = 1/38 (2%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLA-SYGGVVVVTVNYRL 37
+V+IHG + N + ++ ++YRL
Sbjct: 32 IVYIHGGGLMFGKANDLSPQYIDILTEHYDLIQLSYRL 69
>3gme_A Polyribonucleotide nucleotidyltransferase; protein-RNA complex,
cytoplasm, nucleotidyltransferase, RNA- binding,
transferase, hydrolase; 2.40A {Escherichia coli
E24377A} PDB: 3gll_A 3gcm_A 3h1c_A 3cdj_A
Length = 549
Score = 26.7 bits (60), Expect = 0.31
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 18 DGSVLASYGG-VVVVTV 33
+V+ S V VTV
Sbjct: 28 TAAVMVSMDDTAVFVTV 44
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide
complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A
4am3_A
Length = 726
Score = 26.3 bits (59), Expect = 0.34
Identities = 9/17 (52%), Positives = 12/17 (70%), Gaps = 1/17 (5%)
Query: 18 DGSVLASYGG-VVVVTV 33
DG+VLA+ G VV+ T
Sbjct: 42 DGAVLATMGETVVLATA 58
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH
domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Length = 630
Score = 26.3 bits (59), Expect = 0.39
Identities = 7/17 (41%), Positives = 9/17 (52%), Gaps = 1/17 (5%)
Query: 18 DGSVLASYGG-VVVVTV 33
DGS + G V+VT
Sbjct: 29 DGSAVVQSGDTAVMVTA 45
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA
degradation, kinase, transferase; 2.60A {Escherichia
coli} PDB: 1sro_A
Length = 723
Score = 26.3 bits (59), Expect = 0.43
Identities = 6/17 (35%), Positives = 8/17 (47%), Gaps = 1/17 (5%)
Query: 18 DGSVLASYGG-VVVVTV 33
+V+ S V VTV
Sbjct: 34 TAAVMVSMDDTAVFVTV 50
>3bxp_A Putative lipase/esterase; putative carboxylesterase, structural
genomics, joint center structural genomics, JCSG; HET:
EPE; 1.70A {Lactobacillus plantarum WCFS1} PDB: 3d3n_A*
Length = 277
Score = 26.0 bits (57), Expect = 0.47
Identities = 9/39 (23%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 1 MVFIHGESYEWNSGNAYD--GSVLASYGGVVVVTVNYRL 37
M+ G + ++SG + + + G + V +NY+L
Sbjct: 38 MIICPGGGFTYHSGREEAPIATRMMAAG-MHTVVLNYQL 75
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide
transferase, ATP-GTP diphosphotransferase RNA
processing, RNA degradation; 2.5A {Streptomyces
antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4
d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Length = 757
Score = 25.6 bits (57), Expect = 0.68
Identities = 4/18 (22%), Positives = 7/18 (38%), Gaps = 2/18 (11%)
Query: 18 DGSVLASYGG--VVVVTV 33
GS +A +V+
Sbjct: 51 AGSAVAYLDDDTMVLSAT 68
>3hxk_A Sugar hydrolase; alpha-beta protein., structural genomics, PSI-2,
protein structure initiative; 3.20A {Lactococcus lactis
subsp}
Length = 276
Score = 25.5 bits (56), Expect = 0.80
Identities = 9/41 (21%), Positives = 16/41 (39%), Gaps = 5/41 (12%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASY---GGVVVVTVNYRLG 38
++ G Y+ S + LA G V+ +NY +
Sbjct: 46 IIICPGGGYQHISQR--ESDPLALAFLAQGYQVLLLNYTVM 84
>3bjr_A Putative carboxylesterase; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI-2; 2.09A {Lactobacillus plantarum WCFS1}
Length = 283
Score = 23.3 bits (50), Expect = 4.3
Identities = 8/41 (19%), Positives = 12/41 (29%), Gaps = 5/41 (12%)
Query: 1 MVFIHGESYEWNSGNAYDGSVLASY---GGVVVVTVNYRLG 38
++ + G SY LA G + Y L
Sbjct: 53 IIIVPGGSYTHIPVA--QAESLAMAFAGHGYQAFYLEYTLL 91
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta
propeller, hydrolase, oligop SIZE selectivity; HET: GOL;
1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A*
1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Length = 582
Score = 23.2 bits (50), Expect = 4.8
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 10/41 (24%)
Query: 1 MVFIHG-----ESYEWNSGNAYDGSVLASYGGVVVVTVNYR 36
+V +HG +S W++ A LA+ G VV NYR
Sbjct: 363 VVLVHGGPFAEDSDSWDTFAAS----LAAAG-FHVVMPNYR 398
>1t5h_X 4-chlorobenzoyl COA ligase; adenylate-forming coenzyme A ligase
domain alternation confo change; 2.00A {Alcaligenes SP}
SCOP: e.23.1.1 PDB: 1t5d_X 3cw9_A* 3cw8_X* 2qvz_X*
2qw0_X* 3dlp_X* 2qvx_X* 2qvy_X*
Length = 504
Score = 22.9 bits (50), Expect = 7.1
Identities = 5/11 (45%), Positives = 6/11 (54%)
Query: 27 GVVVVTVNYRL 37
G V +N RL
Sbjct: 78 GAVPALLNPRL 88
>3r44_A Fatty acyl COA synthetase FADD13 (fatty-acyl-COA synthetase);
ligase; HET: HIS; 1.80A {Mycobacterium tuberculosis}
PDB: 3t5c_A 3t5b_A
Length = 517
Score = 22.5 bits (49), Expect = 9.1
Identities = 7/15 (46%), Positives = 9/15 (60%)
Query: 23 ASYGGVVVVTVNYRL 37
A+ G V V +N RL
Sbjct: 88 AAKLGAVAVPINTRL 102
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.143 0.436
Gapped
Lambda K H
0.267 0.0586 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 893,376
Number of extensions: 38830
Number of successful extensions: 146
Number of sequences better than 10.0: 1
Number of HSP's gapped: 135
Number of HSP's successfully gapped: 45
Length of query: 53
Length of database: 6,701,793
Length adjustment: 25
Effective length of query: 28
Effective length of database: 6,003,768
Effective search space: 168105504
Effective search space used: 168105504
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)