Query psy2608
Match_columns 321
No_of_seqs 261 out of 1527
Neff 6.8
Searched_HMMs 46136
Date Fri Aug 16 20:33:34 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1870|consensus 100.0 1.4E-38 3E-43 336.6 12.4 279 3-281 533-842 (842)
2 COG5560 UBP12 Ubiquitin C-term 100.0 1.5E-36 3.2E-41 300.3 7.0 131 151-281 672-823 (823)
3 KOG1865|consensus 100.0 5.6E-33 1.2E-37 273.5 13.4 151 130-280 237-410 (545)
4 cd02663 Peptidase_C19G A subfa 100.0 1.3E-31 2.8E-36 253.3 14.2 126 152-278 145-300 (300)
5 cd02667 Peptidase_C19K A subfa 100.0 1.7E-30 3.7E-35 243.5 13.2 124 152-278 109-279 (279)
6 cd02664 Peptidase_C19H A subfa 100.0 1.8E-30 3.8E-35 248.7 11.4 124 155-278 135-327 (327)
7 COG5533 UBP5 Ubiquitin C-termi 100.0 4.5E-30 9.8E-35 237.2 11.9 147 133-280 236-414 (415)
8 cd02668 Peptidase_C19L A subfa 100.0 1.9E-29 4.1E-34 241.0 13.8 126 153-278 155-324 (324)
9 cd02671 Peptidase_C19O A subfa 100.0 1.9E-29 4E-34 242.5 13.5 122 152-278 178-332 (332)
10 cd02660 Peptidase_C19D A subfa 100.0 1.2E-28 2.6E-33 234.7 14.3 126 152-278 174-328 (328)
11 cd02659 peptidase_C19C A subfa 100.0 2E-28 4.3E-33 233.7 13.7 129 153-281 150-333 (334)
12 cd02674 Peptidase_C19R A subfa 100.0 4.5E-28 9.7E-33 219.1 13.5 127 152-278 82-230 (230)
13 cd02658 Peptidase_C19B A subfa 100.0 8.8E-28 1.9E-32 227.5 14.5 123 152-278 176-311 (311)
14 KOG1868|consensus 100.0 8.8E-29 1.9E-33 252.5 8.1 130 153-282 496-648 (653)
15 cd02661 Peptidase_C19E A subfa 100.0 9.2E-28 2E-32 225.0 13.6 125 154-278 162-304 (304)
16 cd02662 Peptidase_C19F A subfa 99.9 2.2E-27 4.8E-32 218.0 13.8 116 152-278 94-240 (240)
17 cd02672 Peptidase_C19P A subfa 99.9 4.8E-27 1E-31 219.6 12.7 118 152-278 115-268 (268)
18 cd02673 Peptidase_C19Q A subfa 99.9 2.3E-27 5E-32 219.1 10.4 120 154-278 110-245 (245)
19 cd02665 Peptidase_C19I A subfa 99.9 1.3E-26 2.9E-31 211.6 9.0 120 153-278 92-228 (228)
20 cd02657 Peptidase_C19A A subfa 99.9 3.7E-26 8E-31 215.7 11.5 121 153-278 159-305 (305)
21 KOG1866|consensus 99.9 2.6E-27 5.7E-32 237.9 -1.8 142 153-294 245-448 (944)
22 cd02669 Peptidase_C19M A subfa 99.9 1.5E-25 3.3E-30 222.9 9.9 114 153-278 302-440 (440)
23 cd02670 Peptidase_C19N A subfa 99.9 5E-25 1.1E-29 202.7 11.1 114 142-278 68-241 (241)
24 KOG4598|consensus 99.9 5E-26 1.1E-30 227.2 2.0 138 154-291 214-452 (1203)
25 KOG1873|consensus 99.9 2.2E-25 4.8E-30 224.6 2.0 129 152-280 676-877 (877)
26 cd02257 Peptidase_C19 Peptidas 99.9 4E-23 8.6E-28 184.2 12.9 124 152-278 97-255 (255)
27 COG5077 Ubiquitin carboxyl-ter 99.9 6.7E-25 1.5E-29 221.1 1.6 161 150-312 334-544 (1089)
28 KOG1867|consensus 99.9 4.3E-23 9.3E-28 206.6 7.3 130 154-284 334-488 (492)
29 KOG1864|consensus 99.8 2.6E-21 5.6E-26 197.0 9.9 130 152-281 419-573 (587)
30 PF00443 UCH: Ubiquitin carbox 99.8 1.3E-20 2.9E-25 170.8 10.0 100 173-277 141-269 (269)
31 KOG0944|consensus 99.7 4.7E-18 1E-22 170.5 10.6 59 219-280 703-762 (763)
32 COG5207 UBP14 Isopeptidase T [ 99.7 1.4E-16 3E-21 155.8 7.2 58 222-279 687-748 (749)
33 cd02666 Peptidase_C19J A subfa 99.6 1.2E-16 2.6E-21 154.4 5.5 104 152-278 187-343 (343)
34 KOG1863|consensus 99.6 2.1E-16 4.6E-21 172.0 4.4 146 150-297 314-501 (1093)
35 PF13423 UCH_1: Ubiquitin carb 99.5 8.7E-14 1.9E-18 131.4 10.5 105 152-259 161-295 (295)
36 KOG1871|consensus 99.4 2.3E-13 5E-18 130.1 4.9 125 153-281 264-420 (420)
37 KOG1872|consensus 99.3 2.7E-12 5.8E-17 125.5 5.5 63 220-282 401-471 (473)
38 KOG1275|consensus 98.6 1.4E-07 3E-12 98.5 9.2 104 174-277 701-860 (1118)
39 KOG2026|consensus 98.6 1.3E-08 2.8E-13 97.7 1.0 116 153-280 302-441 (442)
40 PF15499 Peptidase_C98: Ubiqui 97.1 0.00042 9.1E-09 64.0 3.2 80 175-258 171-252 (275)
41 PF05408 Peptidase_C28: Foot-a 79.9 2.3 4.9E-05 37.8 3.7 41 235-281 136-176 (193)
42 COG3478 Predicted nucleic-acid 67.9 4.8 0.0001 29.6 2.3 36 172-207 2-39 (68)
43 TIGR03180 UraD_2 OHCU decarbox 65.5 6.7 0.00014 34.0 3.2 27 18-45 106-132 (158)
44 PRK13798 putative OHCU decarbo 58.9 9.9 0.00021 33.2 3.1 27 18-45 111-137 (166)
45 PF01473 CW_binding_1: Putativ 58.8 7.9 0.00017 21.1 1.6 14 243-257 3-16 (19)
46 TIGR03164 UHCUDC OHCU decarbox 56.2 12 0.00026 32.4 3.1 27 18-45 106-132 (157)
47 PF09349 OHCU_decarbox: OHCU d 50.1 11 0.00024 32.5 2.0 26 18-44 109-134 (159)
48 cd06404 PB1_aPKC PB1 domain is 46.9 66 0.0014 25.0 5.5 47 19-88 8-54 (83)
49 PF02099 Josephin: Josephin; 38.8 41 0.00089 29.1 3.7 32 225-261 99-130 (157)
50 COG3195 Uncharacterized protei 38.2 36 0.00078 29.9 3.2 26 18-44 119-144 (176)
51 KOG1887|consensus 35.9 37 0.00081 36.6 3.6 70 189-262 675-765 (806)
52 PF00770 Peptidase_C5: Adenovi 34.0 50 0.0011 29.2 3.5 31 226-256 21-53 (183)
53 PF11058 Ral: Antirestriction 31.4 15 0.00033 26.0 -0.1 16 88-103 9-24 (66)
54 PF08715 Viral_protease: Papai 27.7 57 0.0012 31.6 3.1 32 231-266 267-298 (320)
55 cd06408 PB1_NoxR The PB1 domai 27.7 1.8E+02 0.0039 22.7 5.3 43 20-88 11-53 (86)
56 cd00524 SORL Superoxide reduct 24.4 3.2E+02 0.0069 20.7 6.7 47 226-280 17-67 (86)
57 PF09855 DUF2082: Nucleic-acid 24.1 73 0.0016 23.4 2.4 32 175-206 1-34 (64)
58 cd06406 PB1_P67 A PB1 domain i 23.9 1E+02 0.0022 23.7 3.2 26 19-44 9-34 (80)
59 cd06407 PB1_NLP A PB1 domain i 23.6 2.5E+02 0.0053 21.5 5.4 42 24-88 13-54 (82)
60 PRK13797 putative bifunctional 22.8 78 0.0017 32.7 3.2 27 18-45 461-487 (516)
61 PHA02096 hypothetical protein 21.2 68 0.0015 24.8 1.8 23 7-29 52-74 (103)
62 PRK13590 putative bifunctional 20.2 94 0.002 32.5 3.2 25 18-42 116-144 (591)
63 PF04663 Phenol_monoox: Phenol 20.2 1.1E+02 0.0024 22.7 2.7 28 17-44 22-49 (67)
No 1
>KOG1870|consensus
Probab=100.00 E-value=1.4e-38 Score=336.62 Aligned_cols=279 Identities=28% Similarity=0.443 Sum_probs=196.9
Q ss_pred ccceeeecccCCCceecccceEEecCC-C-CCHHHHHHHHHHHHhhhcCCCCCCC--CCCCCCCCCCCCCCCc------c
Q psy2608 3 RQTAYFLSAHKYRPILFGIPVIVPCSD-T-TTQQDLYQAVWLQVARLVTPLPPLE--TSPPNHAMDCDDSLGY------E 72 (321)
Q Consensus 3 ~~~~y~~s~~~~~~~lfG~Pl~~~~~~-~-~t~~~Ly~~v~~~~~r~~~~~~~~~--~~~~~~~~~~~~~~~~------~ 72 (321)
+.+.++...+..+..+||.||+++++. . .|..+|+..+..+.+++..-.+... ........+..+..+. .
T Consensus 533 ~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~t~~~l~~~~~~~~s~~~~~~~~~v~~~~~~~~~~~~~e~~~~s~~~~~~ 612 (842)
T KOG1870|consen 533 RLPRSKGIRSHVSSKLFGLPLLVSVLSGAQSTEEDLLSVICHRTSRYSREPPLNVGYGVDDQSLKEVSEQSAESSSSVSR 612 (842)
T ss_pred ccccccCcccCCCccccCCcceeeccCCCcccccchhhHHhhcccccCCcCccccccCCCcccccccccccccccccccC
Confidence 444555556677889999999999987 3 5999999999999888876421110 0000111110000000 0
Q ss_pred cceEEE--EeCCCCCcccCCcccccccCccccCCCCcccCCCCcEEEEecCcchhhccccccceeeeecccccccccccc
Q psy2608 73 YPFVLK--AITPDGMQCSLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDWDPTALHLRYQSSLEKVFEEHETCIASKREQ 150 (321)
Q Consensus 73 ~pf~l~--~v~~~g~~c~~C~~~~~C~gC~~~~~~~~~~~~~~~~i~idW~~~~~~~~y~~~~~~~~~~~~s~~~~~~~~ 150 (321)
-|.... ..+..+..+..+....++..+......+.+...+...++.+|.|......+..........++.........
T Consensus 613 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (842)
T KOG1870|consen 613 DPSEDDNSDQDLSLECLSEESALRFFQSLESRNKSDSEFEPGSTSIAVDWSPSAKYKYSSSLVSQPPEVEPRGASRSKGS 692 (842)
T ss_pred CChhHhccccccchhhccCcccccccccccccccccccccCCCceeecccChhhccccccccccccccccccccccccCC
Confidence 000000 111122233333333444444444444333333323489999998877777666555556666655544445
Q ss_pred CCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----cc---------cc---
Q psy2608 151 TEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----RL---------TR--- 214 (321)
Q Consensus 151 ~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----k~---------~~--- 214 (321)
..+++|++||+.|+++|.|+.+++|+|++|++++.|+|++.+|+||++||||||||.+.. |+ ..
T Consensus 693 ~~~~sL~~cl~~F~~~E~L~~~~~w~C~~Cke~~~A~Kk~~lwrlPeiLiihLKrF~~~r~~~~k~~~~v~fPi~~ld~s 772 (842)
T KOG1870|consen 693 PAPNSLESCLELFSEPETLGKDDRWYCPQCKELRQATKKLDLWRLPEILIIHLKRFQYSRESSSKVKTKVEFPLGSLDLS 772 (842)
T ss_pred CCcccHHHHHHhhcchhcCCccccccChHHHHHHHHhhhhhhhhCCceEEEEeecceeechhhhhhCccccCCCcCCCcc
Confidence 568999999999999999999999999999999999999999999999999999997643 22 00
Q ss_pred --CCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcC
Q psy2608 215 --GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKD 281 (321)
Q Consensus 215 --~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~ 281 (321)
........|+|+||++|+|++++||||||+|+. +++||.|||++|+++++++|.+++||+|||+|++
T Consensus 773 ~~~~~~~~~~Y~l~av~nHyG~l~~GHYta~~k~~~~~~w~~fdDs~v~~~~~~~i~t~~aY~Lfy~r~~ 842 (842)
T KOG1870|consen 773 EFVVNKEQVLYDLYAVGNHYGQLSGGHYTAYAKNVGDGKWYLFDDSSVSEVDEDEIDTEAAYVLFYRRLD 842 (842)
T ss_pred hhhccCccceeeeeeeecccCCcCCcchhhhhhcCCCCceEEeccccCCCCChhhcccccceEEEEEecC
Confidence 111223899999999999999999999999997 9999999999999999999999999999999975
No 2
>COG5560 UBP12 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-36 Score=300.35 Aligned_cols=131 Identities=41% Similarity=0.739 Sum_probs=118.5
Q ss_pred CCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeec----cccc--------------
Q psy2608 151 TEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQ----SHRL-------------- 212 (321)
Q Consensus 151 ~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~----~~k~-------------- 212 (321)
..++||++||..|.++|.|+..+.||||.||.+++|+|++.||++|.|||||||||+. ..|+
T Consensus 672 ~rtiTL~dCl~eFskpEqLgl~DswyCpgCkefrqasKqmelwrlP~iLiihLkRFss~rsfrdKiddlVeyPiddldLs 751 (823)
T COG5560 672 ERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQMELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLS 751 (823)
T ss_pred cCCCcHHHHHHHhccHhhcCCcccccCCchHhhhhhhhhhhhhcCChheeeehhhhhhcccchhhhhhhhcccccccccc
Confidence 3679999999999999999999999999999999999999999999999999999963 3455
Q ss_pred --ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcC
Q psy2608 213 --TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKD 281 (321)
Q Consensus 213 --~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~ 281 (321)
..........|+||||=||+|++++||||||+||. +++||+|||+.|+++.+++.++++||+|||+|+.
T Consensus 752 ~~~~~~~~p~liydlyavDNHygglsgGHYtAyarn~~n~~wy~fdDsritevdped~vtssaYvLFyrrk~ 823 (823)
T COG5560 752 GVEYMVDDPRLIYDLYAVDNHYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRKS 823 (823)
T ss_pred ceEEeecCcceEEEeeeccccccccCCcceeeeeecccCCceEEecCccccccCccccccceeEEEEEEecC
Confidence 01112334789999999999999999999999998 8899999999999999999999999999999974
No 3
>KOG1865|consensus
Probab=100.00 E-value=5.6e-33 Score=273.51 Aligned_cols=151 Identities=32% Similarity=0.498 Sum_probs=127.2
Q ss_pred cccceeeeecccccccccc-----ccCCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEee
Q psy2608 130 QSSLEKVFEEHETCIASKR-----EQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRN 204 (321)
Q Consensus 130 ~~~~~~~~~~~~s~~~~~~-----~~~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLk 204 (321)
++.+.|..|++.|.....- .....-+|++||++|+++|.|+|+|+|.|++|+++++|.|+++|.++|+||+||||
T Consensus 237 rS~vkC~~C~~vS~tyE~~~dltvei~d~~sl~~AL~qFt~~E~L~gen~Y~C~~Ck~~v~A~K~lti~raPnVLTi~LK 316 (545)
T KOG1865|consen 237 RSQIKCLHCKGVSDTYEPYLDLTLEIQDASSLQQALEQFTKPEKLDGENAYHCGRCKQKVPASKQLTIHRAPNVLTLHLK 316 (545)
T ss_pred hhceecccCCCcccccccccceEEEeccchhHHHHHHHhhhHHhhCCccccccchhhhhCcccceeeeecCCceEEEeee
Confidence 3445566677666422110 01256799999999999999999999999999999999999999999999999999
Q ss_pred eeec--cccc---------------ccCCCCCCceeEEeEEEEeecc-CCCceeEEEEECCCCcEEEEcCCceeEeCCCc
Q psy2608 205 TTVQ--SHRL---------------TRGHDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNPNGKWYAYNDSSCRQVSSGE 266 (321)
Q Consensus 205 Rf~~--~~k~---------------~~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~ 266 (321)
||.. ..|| .........+|.|||||+|.|. ..+|||++|||..+|+||.|||+.|+.++.+.
T Consensus 317 RF~~~~~gKI~K~I~fPE~LDl~PyMS~~~e~s~~Y~LYavlVH~g~~~~~GHY~cYvks~~g~Wy~~DDS~V~~~~~~~ 396 (545)
T KOG1865|consen 317 RFSNGTGGKISKPVSFPETLDLQPYMSQPNEGSTVYKLYAVLVHLGTSCHSGHYFCYVKSQNGQWYKMDDSEVTQSSIES 396 (545)
T ss_pred hhccCcccccccccCCcccccccccccCCCCCCceEEEEEEEEeccccccCCceEEEEEcCCCceEEccCceeeeccccc
Confidence 9974 3455 1112335679999999999995 89999999999989999999999999999999
Q ss_pred ccCCCcEEEEEEEc
Q psy2608 267 MDTSCAYMLFYERK 280 (321)
Q Consensus 267 v~~~~AYiLfY~R~ 280 (321)
|++..||||||.|+
T Consensus 397 VLsq~AYmLfY~R~ 410 (545)
T KOG1865|consen 397 VLSQQAYILFYARK 410 (545)
T ss_pred eecccceEEEEEee
Confidence 99999999999997
No 4
>cd02663 Peptidase_C19G A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.3e-31 Score=253.30 Aligned_cols=126 Identities=29% Similarity=0.589 Sum_probs=111.2
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------cc----------cc-
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RL----------TR- 214 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~----------~~- 214 (321)
...+|++||+.|+++|.|.+++.|+|++|++++.|+|+..|.++|++|+|||+||.+.. |+ ..
T Consensus 145 ~~~sl~~~L~~~~~~E~l~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~L~~~ 224 (300)
T cd02663 145 QNTSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLNRYIKLFYRVVFPLELRLF 224 (300)
T ss_pred CcCCHHHHHHHhhcccccCCCCcEECCCCCCceeEEEEEEeccCCceeEEEEEeEEeecccCCceecCceEecCcEEecc
Confidence 45799999999999999999999999999999999999999999999999999997532 32 00
Q ss_pred ----CCCCCCceeEEeEEEEeecc-CCCceeEEEEECCCCcEEEEcCCceeEeCCCccc--------CCCcEEEEEE
Q psy2608 215 ----GHDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMD--------TSCAYMLFYE 278 (321)
Q Consensus 215 ----~~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~--------~~~AYiLfY~ 278 (321)
........|+|+|||+|.|. +++|||+||+|. +++||+|||+.|+++++++|. +.+||||||+
T Consensus 225 ~~~~~~~~~~~~Y~L~~vi~H~G~~~~~GHY~a~~k~-~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~~aYiLfY~ 300 (300)
T cd02663 225 NTTDDAENPDRLYELVAVVVHIGGGPNHGHYVSIVKS-HGGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300 (300)
T ss_pred ccccccCCCCeEEEEEEEEEEecCCCCCCceEEEEEC-CCcEEEEcCCceEEcCHHHHHHhcCCCCCCCceEEEEeC
Confidence 11223468999999999996 899999999999 899999999999999998885 7999999996
No 5
>cd02667 Peptidase_C19K A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.7e-30 Score=243.46 Aligned_cols=124 Identities=39% Similarity=0.696 Sum_probs=109.5
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc-----ccc-----c-------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH-----RLT-----R------- 214 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~-----k~~-----~------- 214 (321)
..++|++||+.|+++|.|++++.|.|++|++ |+|+..|.++|++|+||||||.+.. |+. +
T Consensus 109 ~~~sL~~~L~~~~~~E~l~~~~~~~C~~C~~---a~k~~~i~~~P~~Lii~LkRF~~~~~~~~~Ki~~~v~fP~~Ldl~~ 185 (279)
T cd02667 109 SECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKRFQQPRSANLRKVSRHVSFPEILDLAP 185 (279)
T ss_pred CCCCHHHHHHhhcCeeEecCCCcccCCccCc---eeeEeEhhhCCCeEEEEEeccccCcccCceecCceEeCCCccchhh
Confidence 4679999999999999999999999999987 9999999999999999999997652 330 0
Q ss_pred --------CCCCCCceeEEeEEEEeeccCCCceeEEEEECC----------------------CCcEEEEcCCceeEeCC
Q psy2608 215 --------GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP----------------------NGKWYAYNDSSCRQVSS 264 (321)
Q Consensus 215 --------~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~----------------------~~~W~~fnDs~V~~v~~ 264 (321)
........|+|+|||+|.|+.++|||+||+|.. +++||+|||+.|+++++
T Consensus 186 ~~~~~~~~~~~~~~~~Y~L~~vi~H~G~~~~GHY~a~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~W~~~dD~~V~~v~~ 265 (279)
T cd02667 186 FCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHYVAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSL 265 (279)
T ss_pred ccCccccccccCCCceEEEEEEEEEeCCCCCCEeEEEEEcCccccccccccccccccccCCCCCCcEEEEECCccEECCH
Confidence 012245689999999999988999999999963 57999999999999999
Q ss_pred CcccCCCcEEEEEE
Q psy2608 265 GEMDTSCAYMLFYE 278 (321)
Q Consensus 265 ~~v~~~~AYiLfY~ 278 (321)
+++.+.+||||||+
T Consensus 266 ~~v~~~~aYiLfYe 279 (279)
T cd02667 266 EEVLKSEAYLLFYE 279 (279)
T ss_pred HHhccCCcEEEEeC
Confidence 99999999999996
No 6
>cd02664 Peptidase_C19H A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.97 E-value=1.8e-30 Score=248.71 Aligned_cols=124 Identities=31% Similarity=0.569 Sum_probs=108.3
Q ss_pred CHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------cc----------c--cC-
Q psy2608 155 NLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RL----------T--RG- 215 (321)
Q Consensus 155 sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~----------~--~~- 215 (321)
+|++||+.|+++|.|+|+|.|+|++|++++.|.|+..|.++|++|+|||+||.+.. |+ . ..
T Consensus 135 sl~~~l~~~~~~E~l~g~n~~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fp~~ldl~~~~ 214 (327)
T cd02664 135 SVQDLLNYFLSPEKLTGDNQYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVRV 214 (327)
T ss_pred CHHHHHHHhcCeeEccCCCceeCCccCCccceeEEEEcccCChhhEEEeeeeEEccccCcceecCceEecCCEEecCccc
Confidence 79999999999999999999999999999999999999999999999999997532 33 0 00
Q ss_pred ---------------------CCCCCceeEEeEEEEeecc-CCCceeEEEEECCC---------------------CcEE
Q psy2608 216 ---------------------HDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNPN---------------------GKWY 252 (321)
Q Consensus 216 ---------------------~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~~---------------------~~W~ 252 (321)
.......|+|+|||+|.|. +++|||+||+|... ++||
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~~Vi~H~G~~~~~GHY~a~~r~~~~~~~~~~~~~~~~~~~~~~~~~~W~ 294 (327)
T cd02664 215 ESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADSTGQECPEPKDAEENDESKNWY 294 (327)
T ss_pred cccccccccccccccccccccccCCCceEEEEEEEEEccCCCCCcceEEEEecCCccccccccccccccccccCCCCCEE
Confidence 0013468999999999995 89999999999753 7899
Q ss_pred EEcCCceeEeCCCcccC-------CCcEEEEEE
Q psy2608 253 AYNDSSCRQVSSGEMDT-------SCAYMLFYE 278 (321)
Q Consensus 253 ~fnDs~V~~v~~~~v~~-------~~AYiLfY~ 278 (321)
.|||+.|+++++++|.+ .+||||||+
T Consensus 295 ~fnD~~V~~~~~~~v~~~~~~~~~~~aYlLfY~ 327 (327)
T cd02664 295 LFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327 (327)
T ss_pred EEeCCceEECCHHHHHHhhCCCCCCCEEEEEeC
Confidence 99999999999999875 899999996
No 7
>COG5533 UBP5 Ubiquitin C-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.5e-30 Score=237.20 Aligned_cols=147 Identities=31% Similarity=0.571 Sum_probs=119.9
Q ss_pred ceeeeecccccccccc-------ccCCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeee
Q psy2608 133 LEKVFEEHETCIASKR-------EQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNT 205 (321)
Q Consensus 133 ~~~~~~~~~s~~~~~~-------~~~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkR 205 (321)
+.|..|+|.|....-- ..-..+.|+|||+.|+++|.|++++.|.|++|+++++++|++.|.+||++||||++|
T Consensus 236 lqC~~C~~TStT~a~fs~l~vp~~~v~~~~l~eC~~~f~~~e~L~g~d~W~CpkC~~k~ss~K~~~I~~lP~~LII~i~R 315 (415)
T COG5533 236 LQCEACNYTSTTIAMFSTLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLIIHISR 315 (415)
T ss_pred hhhhhcCCceeEEeccceeeeccchheeecHHHHHHHhhhHHhhcCcccccCchhcccccchheEEEEecCceEEEEeee
Confidence 4566777877643211 111246799999999999999999999999999999999999999999999999999
Q ss_pred eec----cccc--------------------ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECCCCcEEEEcCCceeE
Q psy2608 206 TVQ----SHRL--------------------TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQ 261 (321)
Q Consensus 206 f~~----~~k~--------------------~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~ 261 (321)
|.- ..|+ .....-.+.+|.|+||++|.|.+.+|||+++++. ++.|+-|||+.|++
T Consensus 316 F~i~V~~~~kiD~p~gw~~~~~~e~~v~~~f~~~~~~~P~~Y~L~gv~Ch~G~L~gGHY~s~v~~-~~~W~~~dDs~vr~ 394 (415)
T COG5533 316 FHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNGGHYFSEVKR-SGTWNVYDDSQVRK 394 (415)
T ss_pred eeEEeecccccCCCcchhccCCceecccccccCCCCCCccceeEEEEEeecceecCceeEEeeee-cCceEEechhheee
Confidence 951 2233 1111234679999999999999999999999987 79999999999999
Q ss_pred eCC-CcccCCCcEEEEEEEc
Q psy2608 262 VSS-GEMDTSCAYMLFYERK 280 (321)
Q Consensus 262 v~~-~~v~~~~AYiLfY~R~ 280 (321)
++- -+....+||||||+|.
T Consensus 395 ~~~~t~~~~pSsYilFY~r~ 414 (415)
T COG5533 395 GSRTTSGSHPSSYILFYTRS 414 (415)
T ss_pred ccceecccCCcceEEEEEec
Confidence 876 3455679999999985
No 8
>cd02668 Peptidase_C19L A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=1.9e-29 Score=240.97 Aligned_cols=126 Identities=28% Similarity=0.606 Sum_probs=109.2
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------cc----------c---
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RL----------T--- 213 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~----------~--- 213 (321)
..+|++||+.|+.+|.|++++.|.|++|++++.|.|+..|.++|++|+|||+||.+.. |+ .
T Consensus 155 ~~sl~~~L~~~~~~e~l~g~~~~~C~~C~~~~~a~k~~~i~~lP~iLii~LkRf~~d~~~~~~~Ki~~~v~fp~~Ldl~~ 234 (324)
T cd02668 155 HKTLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGAKKKLNASISFPEILDMGE 234 (324)
T ss_pred cCCHHHHHHHhhCceecCCCccccCCCCCceeeeEEEEEecCCCCeEEEEEEcceeecccCcceeCCcEEECCCeEechh
Confidence 5699999999999999999999999999999999999999999999999999997532 22 0
Q ss_pred --cCCCCCCceeEEeEEEEeecc-CCCceeEEEEECC-CCcEEEEcCCceeEeCCCcc---------------------c
Q psy2608 214 --RGHDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEM---------------------D 268 (321)
Q Consensus 214 --~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v---------------------~ 268 (321)
......+..|+|+|||+|.|. +++|||+||+|+. +++||.|||+.|++++.+.+ .
T Consensus 235 ~~~~~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~k~~~~~~W~~fdD~~V~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (324)
T cd02668 235 YLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEWYKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHS 314 (324)
T ss_pred hcccccCCCcEEEEEEEEEEcCCCCCCEeeEEEEECCCCCcEEEEECCceEEcCHHHhhcccccccccccccccCCCccc
Confidence 011124568999999999995 8999999999987 68999999999999977544 4
Q ss_pred CCCcEEEEEE
Q psy2608 269 TSCAYMLFYE 278 (321)
Q Consensus 269 ~~~AYiLfY~ 278 (321)
+.+||||||+
T Consensus 315 ~~~~y~l~y~ 324 (324)
T cd02668 315 SRTAYMLVYK 324 (324)
T ss_pred cCceEEEEeC
Confidence 6899999996
No 9
>cd02671 Peptidase_C19O A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=1.9e-29 Score=242.52 Aligned_cols=122 Identities=28% Similarity=0.595 Sum_probs=105.7
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc----------cccc--------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS----------HRLT-------- 213 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~----------~k~~-------- 213 (321)
+..+|++||+.|+++|.|.|+|.|+|++|++++.|+|+..|.++|++|+||||||... .|+.
T Consensus 178 ~~~tL~~~L~~f~~~E~l~g~n~y~C~~C~~~~~a~k~~~~~~~P~vL~i~LkRF~~~~~~~~~~~~~~Ki~~~v~fp~~ 257 (332)
T cd02671 178 EMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKCFAANGSEFDCYGGLSKVNTPLLTPLK 257 (332)
T ss_pred ccCCHHHHHHHhCCcceecCCCCeeCCCCCCceeEEEEEEEecCCCEEEEEeeeeccccccccccCCceecCccccCccc
Confidence 3469999999999999999999999999999999999999999999999999999843 2331
Q ss_pred -----cCCCCCCceeEEeEEEEeecc-CCCceeEEEEECCCCcEEEEcCCceeEeCCCccc---------CCCcEEEEEE
Q psy2608 214 -----RGHDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMD---------TSCAYMLFYE 278 (321)
Q Consensus 214 -----~~~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~---------~~~AYiLfY~ 278 (321)
.........|+|+|||+|.|+ +++|||+||+| ||+|||+.|++++++++. +.+||||||+
T Consensus 258 L~~~~~~~~~~~~~Y~L~~VI~H~G~~~~~GHY~a~vr-----W~~fdD~~V~~~~~~~~~~~~~~~~~~~~~aYiLfY~ 332 (332)
T cd02671 258 LSLEEWSTKPKNDVYRLFAVVMHSGATISSGHYTAYVR-----WLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFYK 332 (332)
T ss_pred cccccccCCCCCCeEEEEEEEEEcCCCCCCCeEEEEEE-----EEEEcCcceEEccHHHHHhhcCCCCCCCCceEEEEEC
Confidence 011234578999999999995 89999999998 999999999999876653 5799999995
No 10
>cd02660 Peptidase_C19D A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=1.2e-28 Score=234.73 Aligned_cols=126 Identities=37% Similarity=0.681 Sum_probs=111.9
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc-----ccc------------c
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH-----RLT------------R 214 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~-----k~~------------~ 214 (321)
...+|++||+.|+.+|.+++.+ |+|++|++++.+.|+..|.++|++|+|||+||.+.. |+. +
T Consensus 174 ~~~sl~~~L~~~~~~e~~~~~~-~~C~~C~~~~~~~~~~~i~~lP~~Lii~lkRf~~~~~~~~~K~~~~v~fp~~Ldl~~ 252 (328)
T cd02660 174 GTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEHSLNKTSRKIDTYVQFPLELNMTP 252 (328)
T ss_pred CCCCHHHHHHHhcCccccCCCC-ccCCCCCCccceEEEEEecCCCceeEEEEEeEEecCCCCCcCCCcEEeCCCEechhh
Confidence 4589999999999999998877 999999999999999999999999999999997643 320 0
Q ss_pred ------------CCCCCCceeEEeEEEEeeccCCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEE
Q psy2608 215 ------------GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278 (321)
Q Consensus 215 ------------~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~ 278 (321)
........|+|+|||+|.|+.++|||+||+|..+++||+|||+.|+++++++|...+||||||.
T Consensus 253 ~~~~~~~~~~~~~~~~~~~~Y~L~avi~H~G~~~~GHY~~~~~~~~~~W~~~nD~~V~~~~~~~v~~~~ayil~Y~ 328 (328)
T cd02660 253 YTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGHYTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFYH 328 (328)
T ss_pred hcccccccccccccCCCCceEEEEEEEEeeccCCCCcEEEEEECCCCcEEEEECCeeEECCHHHhcCCCcEEEEeC
Confidence 1123457899999999999989999999999866999999999999999999999999999994
No 11
>cd02659 peptidase_C19C A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.96 E-value=2e-28 Score=233.74 Aligned_cols=129 Identities=36% Similarity=0.654 Sum_probs=112.2
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------ccc----------c--
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RLT----------R-- 214 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~~----------~-- 214 (321)
..+|++||+.|+.+|.+++++.|.|++|++++.|.|+..|.++|++|+|||+||.+.. |+. .
T Consensus 150 ~~~l~~~l~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vLii~l~Rf~~~~~~~~~~K~~~~v~fp~~Ldl~~ 229 (334)
T cd02659 150 KKNLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMMRIKINDRFEFPLELDMEP 229 (334)
T ss_pred CCCHHHHHHHhcCeeEecCCccEecCcCCCcccEEEEEEeecCCCEEEEEeeeeEEccccCcceeCCceEeCCceecCcc
Confidence 4689999999999999999999999999999999999999999999999999997531 220 0
Q ss_pred ----C----------CCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCccc-----------
Q psy2608 215 ----G----------HDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMD----------- 268 (321)
Q Consensus 215 ----~----------~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~----------- 268 (321)
. .......|+|+|||+|.|+.++|||+||+|.. +++||.|||+.|+++++++|.
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~vk~~~~~~W~~~nD~~V~~i~~~~v~~~~~g~~~~~~ 309 (334)
T cd02659 230 YTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYSYIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQK 309 (334)
T ss_pred ccccccccccccccccCCCCeeEEEEEEEEecCCCCCCCeEEEEECCCCCceEEEeCcccEECCHHHHHHHcCCCccccc
Confidence 0 12235689999999999999999999999986 799999999999999988773
Q ss_pred -----------CCCcEEEEEEEcC
Q psy2608 269 -----------TSCAYMLFYERKD 281 (321)
Q Consensus 269 -----------~~~AYiLfY~R~~ 281 (321)
+.+||||||+|++
T Consensus 310 ~~~~~~~~~~~~~~ay~l~Y~~~~ 333 (334)
T cd02659 310 TYDSGPRAFKRTTNAYMLFYERKS 333 (334)
T ss_pred cccccccccccccceEEEEEEEeC
Confidence 4679999999976
No 12
>cd02674 Peptidase_C19R A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=4.5e-28 Score=219.07 Aligned_cols=127 Identities=44% Similarity=0.746 Sum_probs=113.0
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----cc----c-c--------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----RL----T-R-------- 214 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----k~----~-~-------- 214 (321)
...+|++||+.|+.+|.+++.+.+.|++|++++.+.++..|.++|++|+|||+||.... |+ . +
T Consensus 82 ~~~sl~~~L~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~lP~iLii~l~R~~~~~~~~~K~~~~v~~~~~~l~l~~ 161 (230)
T cd02674 82 PKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHLKRFSFSRGSTRKLTTPVTFPLNDLDLTP 161 (230)
T ss_pred CCCCHHHHHHHhcCccccCCCCceeCCCCCCccceEEEEEEecCChhhEeEhhheecCCCCcccCCceEecccccccccc
Confidence 45799999999999999999999999999999999999999999999999999997642 22 0 0
Q ss_pred ----CCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEE
Q psy2608 215 ----GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278 (321)
Q Consensus 215 ----~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~ 278 (321)
.......+|+|+|||+|.|..++|||+||+|.. +++||.|||+.|++++++++...+||||||+
T Consensus 162 ~~~~~~~~~~~~Y~L~~vI~H~G~~~~GHY~~~~~~~~~~~W~~fnD~~V~~i~~~~~~~~~~YlL~Y~ 230 (230)
T cd02674 162 YVDTRSFTGPFKYDLYAVVNHYGSLNGGHYTAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230 (230)
T ss_pred ccCcccCCCCceEEEEEEEEeeCCCCCcEEEEEEECCCCCceEEEcCCeEEEcCHHHccCCCceEEEeC
Confidence 112345689999999999988999999999987 4999999999999999999999999999996
No 13
>cd02658 Peptidase_C19B A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=8.8e-28 Score=227.50 Aligned_cols=123 Identities=26% Similarity=0.486 Sum_probs=107.0
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc-----ccc----cCCCCCCce
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH-----RLT----RGHDPFDLK 222 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~-----k~~----~~~~~~~~~ 222 (321)
..++|++||+.|+.+|.++ ++|++|++++.|.|+..|.+||++|+|||+||.+.. |+. ....-.+..
T Consensus 176 ~~~sl~~~L~~~~~~e~i~----~~C~~C~~~~~a~k~~~i~~lP~vLii~LkRF~~~~~~~~~Ki~~~v~~p~~l~~~~ 251 (311)
T cd02658 176 EPVPLEDCLKAYFAPETIE----DFCSTCKEKTTATKTTGFKTFPDYLVINMKRFQLLENWVPKKLDVPIDVPEELGPGK 251 (311)
T ss_pred CCCCHHHHHHHHcCccccc----ccccCCCCcccEEEEEEeecCCceEEEEeEEEEecCCCceEeeccccccCCcCCCCc
Confidence 4579999999999999994 479999999999999999999999999999998732 221 111124568
Q ss_pred eEEeEEEEeecc-CCCceeEEEEECC---CCcEEEEcCCceeEeCCCcccCCCcEEEEEE
Q psy2608 223 YSLYAIVCHSGI-LGGGHYVSYALNP---NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278 (321)
Q Consensus 223 Y~L~aVv~H~G~-~~~GHY~ay~k~~---~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~ 278 (321)
|+|+|||+|.|. +++|||+||+|.. +++||.|||+.|+++++.++.+.+||||||+
T Consensus 252 Y~L~~vI~H~G~~~~~GHY~~~vk~~~~~~~~W~~fnD~~V~~~~~~~~~~~~~YilfY~ 311 (311)
T cd02658 252 YELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLFNDEKVVASQDPPEMKKLGYIYFYQ 311 (311)
T ss_pred EEEEEEEEccCCCCCCcceEEEEeCCCCCCCCEEEecCceeEECCcccccCCcceEEEEC
Confidence 999999999995 8999999999985 2899999999999999999999999999996
No 14
>KOG1868|consensus
Probab=99.95 E-value=8.8e-29 Score=252.51 Aligned_cols=130 Identities=38% Similarity=0.735 Sum_probs=114.5
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeE--EEEEEeecCCeEEEEeeeeeccc----cc--------------
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLAS--KKLEIYRLPPVLIVLRNTTVQSH----RL-------------- 212 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~--k~~~i~~lP~vLiihLkRf~~~~----k~-------------- 212 (321)
.++|++|+..||..|.|++++.|.|++|++.+.++ |++.|++||++|||||+||.... |.
T Consensus 496 ~~~L~~C~~~ft~~ekle~~~~w~Cp~c~~~~~~~~lK~~~i~~lp~iLiihL~Rf~~~~~~~~k~~~~v~~~~~~~~~~ 575 (653)
T KOG1868|consen 496 KVSLEDCLSLFTKEEKLEGDEAWLCPRCKHKESSKTLKKLTILRLPKILIIHLKRFSSDGNSFNKLSTGVDFPLREADLS 575 (653)
T ss_pred ccchHhhhccccchhhcccccccCCccccCcccccccceeeeecCCHHHHHHHHHhccCcccccccceeeccchHhhhhc
Confidence 58899999999999999999999999999999985 99999999999999999996542 11
Q ss_pred --ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcCC
Q psy2608 213 --TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKDL 282 (321)
Q Consensus 213 --~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~~ 282 (321)
..........|+||||++|+|++++||||||++.. .+.|+.|||+.|+.+++.++.++.||||||+|.+.
T Consensus 576 ~~~~~~~~~~~~Y~L~aVv~H~Gtl~sGHYta~~~~~~~~~W~~fdDs~Vs~~~~~~~~~s~aYIlFY~~~~~ 648 (653)
T KOG1868|consen 576 PRFAEKGNNPKSYRLYAVVNHSGTLNSGHYTAYVYKNEKQRWFTFDDSEVSPISETDVGSSSAYILFYERLGI 648 (653)
T ss_pred hhccccCCCccceeeEEEEeccCcccCCceEEEEeecCCCceEEecCeeeeccccccccCCCceEEEeecCCc
Confidence 11122334569999999999999999999999765 78999999999999999999999999999999874
No 15
>cd02661 Peptidase_C19E A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=9.2e-28 Score=224.95 Aligned_cols=125 Identities=39% Similarity=0.619 Sum_probs=111.9
Q ss_pred cCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc--cccc-----c----------CC
Q psy2608 154 INLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS--HRLT-----R----------GH 216 (321)
Q Consensus 154 ~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~--~k~~-----~----------~~ 216 (321)
.+|++||+.|+.+|.+++++.|.|++|++.+.+.++..|.++|++|+|||+||... .|+. + ..
T Consensus 162 ~~l~~~l~~~~~~e~~~~~~~~~C~~C~~~~~~~~~~~i~~~P~iL~i~l~Rf~~~~~~Ki~~~v~f~~~L~l~~~~~~~ 241 (304)
T cd02661 162 DSLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKINKQISFPETLDLSPYMSQP 241 (304)
T ss_pred CcHHHHHHHhcCceeeCCCCCeeCCCCCCccceEEEEEEecCCcEEEEEEeccccCCccccCCeEecCCeechhhccccC
Confidence 58999999999999999999999999999999999999999999999999999864 4441 0 01
Q ss_pred CCCCceeEEeEEEEeecc-CCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEE
Q psy2608 217 DPFDLKYSLYAIVCHSGI-LGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278 (321)
Q Consensus 217 ~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~ 278 (321)
......|+|+|||+|.|. .++|||+||+|.++++||.|||+.|+++++++|.+.+||||||.
T Consensus 242 ~~~~~~Y~L~~vi~H~G~~~~~GHY~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aYil~Y~ 304 (304)
T cd02661 242 NDGPLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMDDSKVSPVSIETVLSQKAYILFYI 304 (304)
T ss_pred CCCCceeeEEEEEEECCCCCCCcCCEEEEECCCCCEEEEeCCeeEECCHHHhcCCCcEEEEeC
Confidence 234578999999999997 59999999999878999999999999999999999999999993
No 16
>cd02662 Peptidase_C19F A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.95 E-value=2.2e-27 Score=218.01 Aligned_cols=116 Identities=33% Similarity=0.636 Sum_probs=100.0
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc-----ccc----cCCCCCCce
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH-----RLT----RGHDPFDLK 222 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~-----k~~----~~~~~~~~~ 222 (321)
...+|++||+.|+.+|.+++ |.|++| +..|.++|++|+|||+||.+.. |+. ....-....
T Consensus 94 ~~~sl~~~L~~~~~~E~l~~---~~C~~C--------~~~i~~lP~vLii~LkRF~~~~~~~~~K~~~~v~fp~~l~~~~ 162 (240)
T cd02662 94 SGTTLEHCLDDFLSTEIIDD---YKCDRC--------QTVIVRLPQILCIHLSRSVFDGRGTSTKNSCKVSFPERLPKVL 162 (240)
T ss_pred CCCCHHHHHHHhcCcccccC---cCCCCC--------eEEeecCCcEEEEEEEEEEEcCCCceeeeccEEECCCccCCce
Confidence 45799999999999999954 899999 7789999999999999998644 331 011114578
Q ss_pred eEEeEEEEeeccCCCceeEEEEECC---------------------CCcEEEEcCCceeEeCCCcc-cCCCcEEEEEE
Q psy2608 223 YSLYAIVCHSGILGGGHYVSYALNP---------------------NGKWYAYNDSSCRQVSSGEM-DTSCAYMLFYE 278 (321)
Q Consensus 223 Y~L~aVv~H~G~~~~GHY~ay~k~~---------------------~~~W~~fnDs~V~~v~~~~v-~~~~AYiLfY~ 278 (321)
|+|+|||+|.|+.++|||+||+|.+ .++||+|||+.|+++++++| .+++||||||+
T Consensus 163 Y~L~avi~H~G~~~~GHY~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~~aY~LfYe 240 (240)
T cd02662 163 YRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMREGPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240 (240)
T ss_pred EEEEEEEEEeccCCCceEEEEEeCCCcccccccccccccccccCccCCCEEEEechheEEeCHHHHhhCCCEEEEEeC
Confidence 9999999999998999999999985 38999999999999999999 99999999996
No 17
>cd02672 Peptidase_C19P A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=4.8e-27 Score=219.61 Aligned_cols=118 Identities=26% Similarity=0.440 Sum_probs=99.6
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCC----eEEEEeeeeeccc-----------cc----
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPP----VLIVLRNTTVQSH-----------RL---- 212 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~----vLiihLkRf~~~~-----------k~---- 212 (321)
..++|.+||+.|+++|.. ++|+|++|++++.|+|++.|+++|+ ||+||||||.... ++
T Consensus 115 ~~~sl~~cL~~~~~~E~~---~~~~C~~C~~~~~a~k~~~i~~lP~~L~~VL~i~lkrf~~~~~~~~~~~~~~~~~~~~v 191 (268)
T cd02672 115 KESTFLQLLKRSLDLEKV---TKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGEFDDINVVLPSGKVMQNKV 191 (268)
T ss_pred cCCCHHHHHHHHhhhhhc---ccccccccCcccccEEEEEeecCCCcccceEEEEEeccChhhcccCcceeEEEecCCee
Confidence 468999999999999854 6788999999999999999999999 9999999996321 11
Q ss_pred c-c----------CCCCCCceeEEeEEEEeecc-CCCceeEEEEECC-----CCcEEEEcCCceeEeCCCcccCCCcEEE
Q psy2608 213 T-R----------GHDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNP-----NGKWYAYNDSSCRQVSSGEMDTSCAYML 275 (321)
Q Consensus 213 ~-~----------~~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~-----~~~W~~fnDs~V~~v~~~~v~~~~AYiL 275 (321)
. + .......+|+|+|||+|.|. .++|||+||+|.. .++||.|||..|++|++ .||||
T Consensus 192 ~f~~~~~~~~~~~~~~~~~~~Y~L~gvV~hig~~~~~GHyva~vk~~~~~~~~~~WylFND~~V~~vs~------~aYiL 265 (268)
T cd02672 192 SPKAIDHDKLVKNRGQESIYKYELVGYVCEINDSSRGQHNVVFVIKVNEESTHGRWYLFNDFLVTPVSE------LAYIL 265 (268)
T ss_pred cccccccchhhhccCCCCCceEEEEEEEEEecCCCCCCcEEEEEEccCCCCCCCcEEEecCeEEEEcCc------hheee
Confidence 0 0 01123467999999999996 4999999999985 47899999999999988 99999
Q ss_pred EEE
Q psy2608 276 FYE 278 (321)
Q Consensus 276 fY~ 278 (321)
||+
T Consensus 266 fY~ 268 (268)
T cd02672 266 LYQ 268 (268)
T ss_pred ecC
Confidence 995
No 18
>cd02673 Peptidase_C19Q A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.94 E-value=2.3e-27 Score=219.07 Aligned_cols=120 Identities=25% Similarity=0.424 Sum_probs=100.4
Q ss_pred cCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecccccc----cC------CCCCCcee
Q psy2608 154 INLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSHRLT----RG------HDPFDLKY 223 (321)
Q Consensus 154 ~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~k~~----~~------~~~~~~~Y 223 (321)
.+|++|++.|.+.|.+ .|.|++|+.. .|.|+..|.++|++|+||||||....++. .. .......|
T Consensus 110 ~~le~l~~~~~~~~~~----e~~C~~C~~~-~a~k~~~i~~~P~vL~i~lkRf~~~~~~~~~~~~~~~~~~~~~~~~~~Y 184 (245)
T cd02673 110 DIDELLISNFKTWSPI----EKDCSSCKCE-SAISSERIMTFPECLSINLKRYKLRIATSDYLKKNEEIMKKYCGTDAKY 184 (245)
T ss_pred chHHHHHHHhhccccc----CccCCCCCCc-cceeechhhhCChhhEEeeEeeeecccccccccccccccccccCCCceE
Confidence 4588999999887766 3789999874 89999999999999999999997533221 00 01134679
Q ss_pred EEeEEEEeecc-CCCceeEEEEECC--CCcEEEEcCCceeEeCCCccc---CCCcEEEEEE
Q psy2608 224 SLYAIVCHSGI-LGGGHYVSYALNP--NGKWYAYNDSSCRQVSSGEMD---TSCAYMLFYE 278 (321)
Q Consensus 224 ~L~aVv~H~G~-~~~GHY~ay~k~~--~~~W~~fnDs~V~~v~~~~v~---~~~AYiLfY~ 278 (321)
+|+|||+|.|+ +++|||+||+|.. +++||.|||+.|+++++++|. +++||||||+
T Consensus 185 ~L~~VV~H~G~~~~~GHY~a~vk~~~~~~~Wy~fnD~~V~~v~~~~v~~~~~~~aYiLFY~ 245 (245)
T cd02673 185 SLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFYD 245 (245)
T ss_pred EEEEEEEECCCCCCCceEEEEEEcCCCCCeEEEeeCceeeEcCHHHHhhccCCceEEEEEC
Confidence 99999999995 8999999999985 589999999999999999997 6899999996
No 19
>cd02665 Peptidase_C19I A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=1.3e-26 Score=211.56 Aligned_cols=120 Identities=26% Similarity=0.333 Sum_probs=98.4
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----cc----ccCCCCCCceeE
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----RL----TRGHDPFDLKYS 224 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----k~----~~~~~~~~~~Y~ 224 (321)
..+|++||+.|+.+|.+++++.++ .+.+.++..|.+||++|+||||||.+.. |+ .....-....|+
T Consensus 92 ~~~L~e~L~~~~~ee~l~~~~~~~------~~~~~~~~~i~~lP~vL~i~LkRF~~~~~~~~Ki~~~v~FP~~l~~~~Y~ 165 (228)
T cd02665 92 YGNLHECLEAAMFEGEVELLPSDH------SVKSGQERWFTELPPVLTFELSRFEFNQGRPEKIHDKLEFPQIIQQVPYE 165 (228)
T ss_pred CCCHHHHHHHhhhhcccccccccc------hhhhhhhhhhhhCChhhEEEeEeeEEcCCccEECCEEEEeeCccCCceeE
Confidence 358999999999999997755432 3457788889999999999999998632 33 111111346899
Q ss_pred EeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCccc--------CCCcEEEEEE
Q psy2608 225 LYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMD--------TSCAYMLFYE 278 (321)
Q Consensus 225 L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~--------~~~AYiLfY~ 278 (321)
|+|||+|.|.+++|||+||+|+. +++||+|||+.|+++++++|. ..+||||||.
T Consensus 166 L~aVi~H~G~~~~GHY~~~i~~~~~~~W~~fdD~~V~~~~~~~v~~~~fGg~~~~~AYiLfYv 228 (228)
T cd02665 166 LHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWEEVERDSFGGGRNPSAYCLMYI 228 (228)
T ss_pred EEEEEEecCCCCCCEEEEEEEcCCCCEEEEEECCeeEEcCHHHHhhhccCCCCCCceEEEEEC
Confidence 99999999999999999999876 899999999999999998885 4589999994
No 20
>cd02657 Peptidase_C19A A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.93 E-value=3.7e-26 Score=215.67 Aligned_cols=121 Identities=25% Similarity=0.353 Sum_probs=101.6
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------ccc-----c---CC--
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RLT-----R---GH-- 216 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~~-----~---~~-- 216 (321)
..+|++||+.++++|.. ..|+.|++...+.|+..|.++|++|+|||+||.+.. |+. + ..
T Consensus 159 ~~~l~~~L~~~~~~~~~-----~~~~~~~~~~~~~k~~~i~~lP~vLii~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~ 233 (305)
T cd02657 159 VNYLQDGLKKGLEEEIE-----KHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFPFELDLYE 233 (305)
T ss_pred cccHHHHHHHhhhhhhh-----hcCcccCCCceEEEEEEeccCCcEEEEEEECCccccccCceeecCcEEECCceEeccc
Confidence 45899999999987654 469999999999999999999999999999997532 220 0 00
Q ss_pred -CCCCceeEEeEEEEeec-cCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccC-------CCcEEEEEE
Q psy2608 217 -DPFDLKYSLYAIVCHSG-ILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDT-------SCAYMLFYE 278 (321)
Q Consensus 217 -~~~~~~Y~L~aVv~H~G-~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~-------~~AYiLfY~ 278 (321)
-..+.+|+|+|||+|.| +.++|||+||+|.. +++||.|||+.|+++++++|.. .+||||||+
T Consensus 234 ~~~~~~~Y~L~~vI~H~G~~~~~GHY~~~~~~~~~~~W~~fdD~~V~~~~~~~v~~~~~~~~~~~aYiL~Y~ 305 (305)
T cd02657 234 LCTPSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEEDILKLSGGGDWHIAYILLYK 305 (305)
T ss_pred ccCCCCcEEEEEEEEecCCCCCCcEEEEEEEcCCCCeEEEEECCceEEeCHHHHHhhcCCCCCceEEEEEEC
Confidence 01356899999999999 58999999999997 4999999999999999999863 799999996
No 21
>KOG1866|consensus
Probab=99.92 E-value=2.6e-27 Score=237.90 Aligned_cols=142 Identities=32% Similarity=0.442 Sum_probs=119.7
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------cc--------------
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RL-------------- 212 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~-------------- 212 (321)
.-+|+++|++|.+.|.|+|.|.|+|++|++++...|+..|.+||++|+||||||.+.- |.
T Consensus 245 ~~nLeesLeqfv~gevlEG~nAYhCeKCdeK~~TvkRt~ik~LPsvl~IqLkRF~yD~e~~~~iK~n~~frFP~~ldMeP 324 (944)
T KOG1866|consen 245 HQNLEESLEQFVKGEVLEGANAYHCEKCDEKVDTVKRTCIKKLPSVLAIQLKRFDYDWERECAIKFNDYFRFPRELDMEP 324 (944)
T ss_pred cchHHHHHHHHHHHHHhcCcchhhhhhhhhhhHhHHHHHHhhCChhheehhhhccchhhhccccccchhcccchhhcCCc
Confidence 3489999999999999999999999999999999999999999999999999996521 11
Q ss_pred ------------------ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECC----CCcEEEEcCCceeEeCCCccc--
Q psy2608 213 ------------------TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP----NGKWYAYNDSSCRQVSSGEMD-- 268 (321)
Q Consensus 213 ------------------~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~----~~~W~~fnDs~V~~v~~~~v~-- 268 (321)
.........+|+|.||++|+|.+++|||++||+.. +++||+|||-.|++.+-.++.
T Consensus 325 Ytvsg~a~~e~~~~~~g~~~e~s~~t~~YeLvGVlvHSGqAsaGHYySfIk~rr~~~~~kWykfnD~~Vte~~~n~me~~ 404 (944)
T KOG1866|consen 325 YTVSGVAKLEGENVESGQQLEQSAGTTKYELVGVLVHSGQASAGHYYSFIKQRRGEDGNKWYKFNDGDVTECKMNEMENE 404 (944)
T ss_pred eeehhhhhhccccCCcCcccccccCcceeEEEEEEEecccccCcchhhhhhhhccCCCCceEeccCccccccchhhHHHH
Confidence 01112345799999999999999999999999754 689999999999999876653
Q ss_pred ------------------CCCcEEEEEEEcCCCCCCCCCCCCcc
Q psy2608 269 ------------------TSCAYMLFYERKDLDLGAYLPDVSER 294 (321)
Q Consensus 269 ------------------~~~AYiLfY~R~~~~~~~~~p~~~~~ 294 (321)
--+||||||+|.+..+.+..|....-
T Consensus 405 cfGGey~q~~~~~~~rrR~WNAYmlFYer~~d~p~~~~p~~~~~ 448 (944)
T KOG1866|consen 405 CFGGEYMQMMKRMSYRRRWWNAYMLFYERMDDIPTDDEPIREIL 448 (944)
T ss_pred hhcchhhhcccccchHHHhhhhHHHHHHHhcCCCcccccccccc
Confidence 24899999999988787777776443
No 22
>cd02669 Peptidase_C19M A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=1.5e-25 Score=222.95 Aligned_cols=114 Identities=20% Similarity=0.250 Sum_probs=96.3
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----cc-----ccC--------
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----RL-----TRG-------- 215 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----k~-----~~~-------- 215 (321)
.++|+|||+.| .|++|...+.|+|++.|++||++||||||||.+.. |+ -+.
T Consensus 302 ~~~l~e~L~ky------------~~~~c~~~~~a~k~~~I~~LP~vLiihLKRF~~~~~~~~K~~t~V~FP~~~LDm~~y 369 (440)
T cd02669 302 QVPLKQLLKKY------------DGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDY 369 (440)
T ss_pred cccHHHHHHhc------------CCccceecccceEEEEEeeCCcEEEEEEecccCCCCccccCCCEEECCCCccchhhh
Confidence 36777887654 46778888899999999999999999999997642 33 011
Q ss_pred ------CCCCCceeEEeEEEEeeccC-CCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEE
Q psy2608 216 ------HDPFDLKYSLYAIVCHSGIL-GGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278 (321)
Q Consensus 216 ------~~~~~~~Y~L~aVv~H~G~~-~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~ 278 (321)
.......|+|+|||+|.|.. ++|||+||+|+. +|+||.|||+.|+++++++|..++||||||+
T Consensus 370 ~~~~~~~~~~~~~Y~L~avI~H~G~~~~sGHY~a~v~~~~~~~W~~fdD~~V~~v~~~~v~~~eaYll~Y~ 440 (440)
T cd02669 370 VHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLIFLSESYIQIWE 440 (440)
T ss_pred hCccccccCCCceEEEEEEEEEeccCCCCeeEEEEEEcCCCCeEEEEECCeeeEcCHHHhccCCceEEEeC
Confidence 11345789999999999987 999999999986 8999999999999999999999999999996
No 23
>cd02670 Peptidase_C19N A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.92 E-value=5e-25 Score=202.75 Aligned_cols=114 Identities=25% Similarity=0.446 Sum_probs=89.9
Q ss_pred cccccccccCCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc----ccc-----
Q psy2608 142 TCIASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS----HRL----- 212 (321)
Q Consensus 142 s~~~~~~~~~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~----~k~----- 212 (321)
+++.++....+.++|++||+.|++.|. |+++|++||||||||.+. .|+
T Consensus 68 ~l~ip~~~~~~~~tLedcLe~~~~~e~-----------------------i~~lP~vLiIhLKRF~~~~~~~~Kl~~~I~ 124 (241)
T cd02670 68 QIPVPDDDDGGGITLEQCLEQYFNNSV-----------------------FAKAPSCLIICLKRYGKTEGKAQKMFKKIL 124 (241)
T ss_pred EeecccCCCCCcCCHHHHHHHHhchhh-----------------------hhhCCCeEEEEEEccccCCCcceeCCcEEC
Confidence 344444333467999999999999986 899999999999999873 344
Q ss_pred -----------ccC---------------------CCCCCceeEEeEEEEeecc-CCCceeEEEEECCC-----------
Q psy2608 213 -----------TRG---------------------HDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNPN----------- 248 (321)
Q Consensus 213 -----------~~~---------------------~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~~----------- 248 (321)
... .......|+|+|||+|.|. +++|||+||+|+..
T Consensus 125 fP~~Ldl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Y~L~aVi~H~G~s~~sGHYva~vr~~~~~~~~~~~~~~ 204 (241)
T cd02670 125 IPDEIDIPDFVADDPRACSKCQLECRVCYDDKDFSPTCGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAY 204 (241)
T ss_pred CCCcCCchhhcccccccccccccccccccccccccCCCCCeEEEEEEEEEeCCCCCCCcCeEEEEECCcccccccccCCC
Confidence 000 1123458999999999995 89999999999873
Q ss_pred -CcEEEEcCCceeEeCCC------cccCCCcEEEEEE
Q psy2608 249 -GKWYAYNDSSCRQVSSG------EMDTSCAYMLFYE 278 (321)
Q Consensus 249 -~~W~~fnDs~V~~v~~~------~v~~~~AYiLfY~ 278 (321)
+.||.|||+.|+.+... .+.+.+||||||+
T Consensus 205 ~~~W~~FDD~~v~~~~~~~~~~~~~~~~~~aYmLFYq 241 (241)
T cd02670 205 NAQWVFFDDMADRDGVSNGFNIPAARLLEDPYMLFYQ 241 (241)
T ss_pred CCeEEEecCcccccccccccccchhcccCCceEEEeC
Confidence 79999999998876542 5678999999996
No 24
>KOG4598|consensus
Probab=99.91 E-value=5e-26 Score=227.16 Aligned_cols=138 Identities=29% Similarity=0.495 Sum_probs=118.8
Q ss_pred cCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----------cc-----------
Q psy2608 154 INLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----------RL----------- 212 (321)
Q Consensus 154 ~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----------k~----------- 212 (321)
-+++|+|.+|++||.|+|.|.|-|++||+++.|-|.+.|.++|-+|.||||||.+.. |+
T Consensus 214 ~sieeal~afvqpe~ldg~nqy~ce~ck~k~dahkgl~~~~fpy~lt~~lkrfdfdy~tmhriklnd~~tfp~~l~ln~~ 293 (1203)
T KOG4598|consen 214 KSVEEALTAFVQPELLDGSNQYMCENCKSKQDAHKGLRITQFPYLLTIQLKRFDFDYNTMHRIKLNDKMTFPDVLDLNDY 293 (1203)
T ss_pred hhHHHHHHHhcChhhcCCccHHHHhhhhhhhhhhcCceeeccceeeEEeeecccccchheeeeeecccccCcccccHHHh
Confidence 489999999999999999999999999999999999999999999999999996431 11
Q ss_pred ------------------------------------------------------------------ccCCCCCCceeEEe
Q psy2608 213 ------------------------------------------------------------------TRGHDPFDLKYSLY 226 (321)
Q Consensus 213 ------------------------------------------------------------------~~~~~~~~~~Y~L~ 226 (321)
.......+..|+|+
T Consensus 294 in~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~n~~~g~~~~~~~~~~~~~~sg~~~yelf 373 (1203)
T KOG4598|consen 294 VNKEKRSTTSSAWQQIGKNKSENEEDDMELGSPNPKRCTPGVQSPNRYQGSENVCVGQPIDHAAVDDIVKTSGDNVYELF 373 (1203)
T ss_pred hhhccCCcchhHhhhcccccccccccccccCCCCcccCcccccCcccccCccccccCCcCchhhhhhHhhcCCccHHHhh
Confidence 00011256789999
Q ss_pred EEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCccc-------------CCCcEEEEEEEcCCCCCCCCCCC
Q psy2608 227 AIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMD-------------TSCAYMLFYERKDLDLGAYLPDV 291 (321)
Q Consensus 227 aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~-------------~~~AYiLfY~R~~~~~~~~~p~~ 291 (321)
||.+|+|+..||||+||+|+- +++||.|||..|.-+++.+|. +.+||||+|+|.+......+..+
T Consensus 374 ~imihsg~a~gghy~ayik~~d~~~w~~fnd~~v~~~t~~~i~~sfgg~~~~~~~s~tnaymlmyr~id~krn~~~~~~ 452 (1203)
T KOG4598|consen 374 SVMVHSGNAAGGHYFAYIKNLDQDRWYVFNDTRVDFATPLEIEKSFGGHPSGWNQSNTNAYMLMYRRIDPKRNARFILS 452 (1203)
T ss_pred hhheecCCCCCceeeeeecccCcCceEEecCccccccCHHHHHHhhCCCCCCccccCcchhhhhhhhcCcccccceeec
Confidence 999999999999999999998 899999999999999998883 57999999999987665554443
No 25
>KOG1873|consensus
Probab=99.90 E-value=2.2e-25 Score=224.56 Aligned_cols=129 Identities=40% Similarity=0.690 Sum_probs=109.0
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcc---------------------------eeeEEEEEEeecCCeEEEEee
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTH---------------------------QLASKKLEIYRLPPVLIVLRN 204 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~---------------------------~~a~k~~~i~~lP~vLiihLk 204 (321)
++++++.||..||..|.|.++|+|.|++|.+. ..|.|++-|..+|+||+||||
T Consensus 676 ~p~Svq~CL~nFT~~E~Ls~~N~~~CEnCtk~~n~~~r~k~~~n~~~sk~s~~es~~~~t~akk~~li~~aPpVltihlK 755 (877)
T KOG1873|consen 676 EPCSVQRCLKNFTKVEILSGDNKWACENCTKNLNLQRREKRGLNEDNSKYSFNESEYRNTYAKKKVLINKAPPVLTIHLK 755 (877)
T ss_pred CCccHHHHHHhhhhhhhcccccchhhhhhhccccccchhhccCCCCcccccccchhhhhhhhheeeecccCCceeeehHh
Confidence 48999999999999999999999999999651 136889999999999999999
Q ss_pred eeecc--c------cc----------------ccC-CCCCCceeEEeEEEEeeccCCCceeEEEEEC-------------
Q psy2608 205 TTVQS--H------RL----------------TRG-HDPFDLKYSLYAIVCHSGILGGGHYVSYALN------------- 246 (321)
Q Consensus 205 Rf~~~--~------k~----------------~~~-~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~------------- 246 (321)
||... . +. ... .......|+|+|||.|.|.+.+||||||+|.
T Consensus 756 rf~q~~~~~~~k~~~h~~f~E~~dL~~~~~~rc~~l~~~~s~~Yrl~gvvehsgtm~~ghyvayv~~~t~~~~~~~~~~~ 835 (877)
T KOG1873|consen 756 RFFQDIRGRLSKLNKHVDFKEFEDLLDYMDFRCSHLDEPSSFVYRLAGVVEHSGTMSYGHYVAYVRGGTFLDLSAPSNSK 835 (877)
T ss_pred hhhhhhhchhhcccccchHHHHHHHHHHhhhhccccCCcchhhhhhccceeccccccCCcchhhhhccchhhccCccccc
Confidence 99531 1 11 000 1113458999999999999999999999983
Q ss_pred --------CCCcEEEEcCCceeEeCCCcccCCCcEEEEEEEc
Q psy2608 247 --------PNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERK 280 (321)
Q Consensus 247 --------~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~ 280 (321)
+.|+||+..|+.|++++.++|....||||||+|.
T Consensus 836 ~~~sd~~~~~~~Wy~iSDs~VrevS~d~vLkseAYlLFYERI 877 (877)
T KOG1873|consen 836 DFESDAGIPSGRWYYISDSIVREVSLDEVLKSEAYLLFYERI 877 (877)
T ss_pred cchhccCCCCcceEEecchheecccHHHHhhhhhhhhheecC
Confidence 2479999999999999999999999999999983
No 26
>cd02257 Peptidase_C19 Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.90 E-value=4e-23 Score=184.20 Aligned_cols=124 Identities=44% Similarity=0.750 Sum_probs=105.1
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCC--cceeeEEEEEEeecCCeEEEEeeeeeccc-----cc--------cc--
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCK--THQLASKKLEIYRLPPVLIVLRNTTVQSH-----RL--------TR-- 214 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~--~~~~a~k~~~i~~lP~vLiihLkRf~~~~-----k~--------~~-- 214 (321)
...+|+++|+.++.+|.+.+ ..|..|+ ..+.+.++..|.++|++|+|||+||.... |+ ..
T Consensus 97 ~~~~l~~~l~~~~~~e~~~~---~~~~~c~~~~~~~~~~~~~i~~lP~~L~i~l~R~~~~~~~~~~k~~~~v~~~~~l~~ 173 (255)
T cd02257 97 PQVSLEDCLEKFFKEEILEG---DNCYKCEKKKKQEATKRLKIKKLPPVLIIHLKRFSFNEDGTKEKLNTKVSFPLELDL 173 (255)
T ss_pred CCCcHHHHHHHhhhhhccCC---CCcccCCCCcccceeEEEecccCCceeEEEeeceeeccccccccCCCeEeCCCcccC
Confidence 35799999999999998855 4688887 68899999999999999999999997532 33 00
Q ss_pred -----------CCCCCCceeEEeEEEEeeccC-CCceeEEEEECC-CCcEEEEcCCceeEeCCCcc-----cCCCcEEEE
Q psy2608 215 -----------GHDPFDLKYSLYAIVCHSGIL-GGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEM-----DTSCAYMLF 276 (321)
Q Consensus 215 -----------~~~~~~~~Y~L~aVv~H~G~~-~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v-----~~~~AYiLf 276 (321)
........|+|+|||+|.|.. ++|||+||+|.. +++||.|||+.|++++.+++ ...+||+||
T Consensus 174 ~~~~~~~~~~~~~~~~~~~Y~L~~vi~h~G~~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~~~~~~~~~~~~yll~ 253 (255)
T cd02257 174 SPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYVAYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILF 253 (255)
T ss_pred ccccccccccccccCCCccEEEEEEEEEecCCCCCcCeEEEEeCCCCCceEEEeccccEEcCHHHhhhccCCCCceEEEE
Confidence 011345689999999999975 999999999987 49999999999999999998 689999999
Q ss_pred EE
Q psy2608 277 YE 278 (321)
Q Consensus 277 Y~ 278 (321)
|+
T Consensus 254 Y~ 255 (255)
T cd02257 254 YE 255 (255)
T ss_pred EC
Confidence 96
No 27
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=6.7e-25 Score=221.06 Aligned_cols=161 Identities=27% Similarity=0.427 Sum_probs=134.5
Q ss_pred cCCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc------ccc-----------
Q psy2608 150 QTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS------HRL----------- 212 (321)
Q Consensus 150 ~~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~------~k~----------- 212 (321)
.++.-+|+|.++.|.+.|+|+|+|.|+|++ .+.|.|.|.+-+.++||||-+|||||.+. -||
T Consensus 334 vK~~knLqeSfr~yIqvE~l~GdN~Y~ae~-~GlqdAkKGViFeSlPpVlhlqLKRFeyDfe~d~mvKINDryEFP~eiD 412 (1089)
T COG5077 334 VKGMKNLQESFRRYIQVETLDGDNRYNAEK-HGLQDAKKGVIFESLPPVLHLQLKRFEYDFERDMMVKINDRYEFPLEID 412 (1089)
T ss_pred ccchhhHHHHHHHhhhheeccCCccccccc-ccchhhccceeeccCchHHHHHHHHhccccccCceeeecccccCcchhc
Confidence 345679999999999999999999999999 77899999999999999999999999652 133
Q ss_pred --------ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCccc---------------
Q psy2608 213 --------TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMD--------------- 268 (321)
Q Consensus 213 --------~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~--------------- 268 (321)
.....+.+..|.|+||++|+|.+++|||+|++|.. +|+||+|||..|+.+++.+|.
T Consensus 413 l~pfld~da~ksen~d~vY~LygVlVHsGDl~~GHyYallKpe~dg~WykfdDtrVtrat~kevleeNfGgd~~~~~k~r 492 (1089)
T COG5077 413 LLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYALLKPEKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIR 492 (1089)
T ss_pred cccccCchhhhhcccCcEEEEEEEEEeccccCCceEEEEeccccCCCceeecceehhhHHHHHHHHHhcCCCCCCccccc
Confidence 11223456899999999999999999999999976 999999999999999987773
Q ss_pred -------CCCcEEEEEEEcCCCCCCCCCCCCccccCCCc--ccccccChhhhh
Q psy2608 269 -------TSCAYMLFYERKDLDLGAYLPDVSEREMTDTK--EIDEDYDENEMK 312 (321)
Q Consensus 269 -------~~~AYiLfY~R~~~~~~~~~p~~~~~~~~~~~--~~~~~~~e~~~~ 312 (321)
--+||||+|-|++ ..+..+.++...++|.+. .++++.++.+.|
T Consensus 493 ~~~~~kRfmsAYmLvYlRks-~~ddLlnPV~a~diP~hv~e~l~eei~~~e~r 544 (1089)
T COG5077 493 DHSGIKRFMSAYMLVYLRKS-MLDDLLNPVAAVDIPPHVEEVLSEEIDKTEVR 544 (1089)
T ss_pred CCchhhhhhhhheeeeehHh-HHHhhhCchhhhhCCHHHHHhhCHHHHHHHHH
Confidence 1378999999998 567778888888889877 556655444443
No 28
>KOG1867|consensus
Probab=99.88 E-value=4.3e-23 Score=206.65 Aligned_cols=130 Identities=38% Similarity=0.734 Sum_probs=115.4
Q ss_pred cCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc-----cc------------c---
Q psy2608 154 INLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH-----RL------------T--- 213 (321)
Q Consensus 154 ~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~-----k~------------~--- 213 (321)
.++.+|+..|+..|.++...++.|..|+.++.++|++.|.++|.+|.+||+||.... |+ .
T Consensus 334 ~~~~~cl~~~~~~~~~~~~~~~~c~~c~~~~~~~kql~~~~lP~~l~~~lkRfe~~~~~~~~ki~~~v~fp~~l~m~p~~ 413 (492)
T KOG1867|consen 334 LTLLDCLDRFTRSEQLGKDSKYKCSSCKSKQESTKQLTIRKLPAVLCLHLKRFEHSATGAREKIDSYVSFPVLLNMKPYC 413 (492)
T ss_pred hhhhhhhhhhhhhhhcCcccccccCCcccccccccccccccCCceeeeeeccccccccccccccCcccccchhhcCCccc
Confidence 569999999999999999999999999999999999999999999999999996421 33 0
Q ss_pred -----cCCCCCCceeEEeEEEEeeccCCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcCCCC
Q psy2608 214 -----RGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKDLDL 284 (321)
Q Consensus 214 -----~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~~~~ 284 (321)
...+..+..|+|+|||+|.|.+++|||+||.|+ .+.|+++||+.|..+++++|.+..||+|||.++....
T Consensus 414 ~~~~~~~~~~~~~~Y~L~AVV~H~G~~~SGHY~aY~r~-~~~~~~~dDs~v~~~s~~eVl~~~aylLFY~~~~~~~ 488 (492)
T KOG1867|consen 414 SSEKLKSQDNPDHLYELRAVVVHHGTVGSGHYVAYRRQ-SGGWFKCDDSTVTKVSEEEVLSSQAYLLFYTQEQVEY 488 (492)
T ss_pred cccccccCCCCCceEEEEEEEEeccCCCCCceEEEEEe-CCCcEEEcCeEEEEeeHHHhhhchhhheehhHHhhhh
Confidence 011224679999999999999999999999999 7999999999999999999999999999999876543
No 29
>KOG1864|consensus
Probab=99.85 E-value=2.6e-21 Score=196.97 Aligned_cols=130 Identities=32% Similarity=0.485 Sum_probs=110.8
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccccc-------------------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSHRL------------------- 212 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~k~------------------- 212 (321)
+..++..||+.|..+|.|.|+++|+|++|...|+|.+++.+.++|.+|+||||||.+..+.
T Consensus 419 e~~si~~~l~~~~~~e~l~g~nky~c~~c~s~qeae~~l~~k~lp~~L~l~Lkrfk~~~~~~~~~kl~~~v~~plel~l~ 498 (587)
T KOG1864|consen 419 ENTSITNLLKSFSSTETLSGENKYSCENCCSLQEAERRLKIKKLPYVLTLHLKRFKYSEQQNRYTKLLYRVVFPLELRLK 498 (587)
T ss_pred ccccHHHHHHHhcchhhccCCCcccccccCchhhHHHhccccCCcceeeeehhccccccccccccccccccccccceeec
Confidence 4679999999999999999999999999999999999999999999999999999775322
Q ss_pred -ccCCCC-CCceeEEeEEEEeec-cCCCceeEEEEECCCCcEEEEcCCceeEeCCCccc---CCCcEEEEEEEcC
Q psy2608 213 -TRGHDP-FDLKYSLYAIVCHSG-ILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMD---TSCAYMLFYERKD 281 (321)
Q Consensus 213 -~~~~~~-~~~~Y~L~aVv~H~G-~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~---~~~AYiLfY~R~~ 281 (321)
...... ....|+|+|||+|.| +.+.|||+||+|...-.|+.|||..|..++++.|. ..+.|++||....
T Consensus 499 ~~~~~~~~~~~~Y~L~avVvH~G~~p~~GHYia~~r~~~~nWl~fdD~~V~~~s~~~v~~~~~~s~~~~~~~~~~ 573 (587)
T KOG1864|consen 499 DTLKDDNNPDRKYDLVAVVVHLGSTPNRGHYVAYVKSLDFNWLLFDDDNVEPISEEPVSEFTGSSGDTLFYYVQV 573 (587)
T ss_pred cccccccCccceeeEEEEEEeccCCCCCcceEEEEeeCCCCceecccccccccCcchhhhccCCCccceeeeEEe
Confidence 111111 236899999999999 59999999999985333999999999999998884 5777888887765
No 30
>PF00443 UCH: Ubiquitin carboxyl-terminal hydrolase; InterPro: IPR001394 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to the MEROPS peptidase family C19 (ubiquitin-specific protease family, clan CA). Families within the CA clan are loosely termed papain-like as protein fold of the peptidase unit resembles that of papain, the type example for clan CA. Predicted active site residues for members of this family and family C1 occur in the same order in the sequence: N/Q, C, H. The type example is human ubiquitin-specific protease 14. Ubiquitin is highly conserved, commonly found conjugated to proteins in eukaryotic cells, where it may act as a marker for rapid degradation, or it may have a chaperone function in protein assembly []. The ubiquitin is released by cleavage from the bound protein by a protease []. A number of deubiquitinising proteases are known: all are activated by thiol compounds [, ], and inhibited by thiol-blocking agents and ubiquitin aldehyde [, ], and as such have the properties of cysteine proteases []. The deubiquitinsing proteases can be split into 2 size ranges (20-30 kDa, IPR001578 from INTERPRO, and 100-200 kDa) []: this family are the 100-200 kDa peptides which includes the Ubp1 ubiquitin peptidase from yeast. Only one conserved cysteine can be identified, along with two conserved histidines. The spacing between the cysteine and the second histidine is thought to be more representative of the cysteine/histidine spacing of a cysteine protease catalytic dyad [].; GO: 0004221 ubiquitin thiolesterase activity, 0006511 ubiquitin-dependent protein catabolic process; PDB: 2LBC_A 3MHH_A 3MHS_A 3M99_A 2Y6E_D 2VHF_A 2HD5_A 3NHE_A 2IBI_A 1NBF_B ....
Probab=99.83 E-value=1.3e-20 Score=170.77 Aligned_cols=100 Identities=35% Similarity=0.684 Sum_probs=81.3
Q ss_pred CcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------cc-----cc----------CCCC----CCceeEEeE
Q psy2608 173 EKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RL-----TR----------GHDP----FDLKYSLYA 227 (321)
Q Consensus 173 ~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~-----~~----------~~~~----~~~~Y~L~a 227 (321)
+...|..|+.. +..|.++|++|+|||+||.+.. |+ .+ .... ....|+|+|
T Consensus 141 ~~~~c~~c~~~-----~~~~~~~P~~L~i~l~R~~~~~~~~~~~K~~~~v~~~~~~l~l~~~~~~~~~~~~~~~~Y~L~a 215 (269)
T PF00443_consen 141 SSIKCSSCKNS-----QSSISSLPPILIIQLKRFEFDQETGRSKKINNPVEFPLEELDLSPYLEKNNSECQSNVKYRLVA 215 (269)
T ss_dssp EEEEETTTTCE-----EEEEEEBBSEEEEEEE-EEEESTSSEEEE--CEEB--SSEEEGGGGBSSCCCTHTSSSEEEEEE
T ss_pred ccccccccccc-----ccccccccceeeeccccceeccccccccccccccccCchhhhhhhhhccccccccccceeeehh
Confidence 45789999876 8889999999999999994321 22 01 0011 246999999
Q ss_pred EEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccC---CCcEEEEE
Q psy2608 228 IVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDT---SCAYMLFY 277 (321)
Q Consensus 228 Vv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~---~~AYiLfY 277 (321)
||+|.|..++|||+||+|.. +++|+.|||+.|++++.++|.. .+||||||
T Consensus 216 vi~H~G~~~~GHY~a~v~~~~~~~W~~~dD~~v~~~~~~~v~~~~~~~~yll~Y 269 (269)
T PF00443_consen 216 VIVHYGSADSGHYVAYVRDSDDGKWYKFDDSRVTEVSWEEVIKSSNSTAYLLFY 269 (269)
T ss_dssp EEEEESSTTSEEEEEEEEETTTTEEEEEETTEEEEESHHHHCCGGSTCEEEEEE
T ss_pred hhccccccccceEEEeeccccCCeEEEeeCCceEECCHHHHhhccCCceEEEeC
Confidence 99999999999999999886 5679999999999999999987 99999999
No 31
>KOG0944|consensus
Probab=99.75 E-value=4.7e-18 Score=170.52 Aligned_cols=59 Identities=34% Similarity=0.596 Sum_probs=51.1
Q ss_pred CCceeEEeEEEEeecc-CCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEEEc
Q psy2608 219 FDLKYSLYAIVCHSGI-LGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERK 280 (321)
Q Consensus 219 ~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~ 280 (321)
.+.+|.|+|+|.|.|+ ..+|||++++|. .|+|+.|||+.|- ...+--.+.+||.||+|.
T Consensus 703 g~~~Y~L~a~IsHmGts~~sGHYV~hirK-egkWVlfNDeKv~--~S~~ppK~lgYvY~y~R~ 762 (763)
T KOG0944|consen 703 GPGKYALFAFISHMGTSAHSGHYVCHIRK-EGKWVLFNDEKVA--ASQEPPKDLGYVYLYTRI 762 (763)
T ss_pred CCcceeEEEEEecCCCCCCCcceEEEEee-cCcEEEEcchhhh--hccCChhhcceEEEEEec
Confidence 4568999999999995 999999999998 6999999999997 334445689999999995
No 32
>COG5207 UBP14 Isopeptidase T [Posttranslational modification, protein turnover, chaperones]
Probab=99.65 E-value=1.4e-16 Score=155.81 Aligned_cols=58 Identities=33% Similarity=0.581 Sum_probs=52.2
Q ss_pred eeEEeEEEEeecc-CCCceeEEEEECC-C--CcEEEEcCCceeEeCCCcccCCCcEEEEEEE
Q psy2608 222 KYSLYAIVCHSGI-LGGGHYVSYALNP-N--GKWYAYNDSSCRQVSSGEMDTSCAYMLFYER 279 (321)
Q Consensus 222 ~Y~L~aVv~H~G~-~~~GHY~ay~k~~-~--~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R 279 (321)
-|.|.|||+|.|+ .++|||++|+|.. . -+|+.|||+.+-.++.=++...++||.||+|
T Consensus 687 PYaLtAvI~HkG~s~haGHYv~fIrk~~~~K~kWvl~nDek~v~~~svE~~k~nGYiylf~R 748 (749)
T COG5207 687 PYALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFKR 748 (749)
T ss_pred cccceeEEeccCCcccccceEEEEecccCcceeEEEEccchheehhhHHHHhhCCeEEEEec
Confidence 4999999999995 9999999999975 3 3699999999988888788889999999998
No 33
>cd02666 Peptidase_C19J A subfamily of Peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl group of the C-terminal Gly residue of ubiquitin. The purpose of the de-ubiquitination is thought to be editing of the ubiquitin conjugates, which could rescue them from degradation, as well as recycling of the ubiquitin. The ubiquitin/proteasome system is responsible for most protein turnover in the mammalian cell, and with over 50 members, family C19 is one of the largest families of peptidases in the human genome.
Probab=99.64 E-value=1.2e-16 Score=154.44 Aligned_cols=104 Identities=26% Similarity=0.398 Sum_probs=83.9
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEee-------------eeeccccc------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRN-------------TTVQSHRL------ 212 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLk-------------Rf~~~~k~------ 212 (321)
++.+|++||+.|+..|. |.++|++|.|||+ ||....-+
T Consensus 187 ~~~~L~d~L~~~~~~e~-----------------------~~~~P~vl~~qlq~~~~~~~~~~~~dry~~~~~~~~~~~l 243 (343)
T cd02666 187 EPKDLYDALDRYFDYDS-----------------------LTKLPQRSQVQAQLAQPLQRELISMDRYELPSSIDDIDEL 243 (343)
T ss_pred CCCCHHHHHHHhcChhh-----------------------hccCCHHHHHHHhhcccccchheeeccccccchHHHHHHH
Confidence 46899999999999886 8999999999975 22211000
Q ss_pred ---------------------------ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCC
Q psy2608 213 ---------------------------TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSS 264 (321)
Q Consensus 213 ---------------------------~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~ 264 (321)
..-.+.....|+|+||++|.|..++|||++|+|+. ++.||+|||+.|++++.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~dD~~V~~v~~ 323 (343)
T cd02666 244 IREAIQSESSLVRQAQNELAELKHEIEKQFDDLKSYGYRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPA 323 (343)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccCCCceEEEEEEEeecCCCCCeEEEEEEECCCCeEEEEECCeeEEecH
Confidence 00112256789999999999999999999999987 78999999999999999
Q ss_pred Cccc------CCCcEEEEEE
Q psy2608 265 GEMD------TSCAYMLFYE 278 (321)
Q Consensus 265 ~~v~------~~~AYiLfY~ 278 (321)
+++. +.+||+|||.
T Consensus 324 ~ev~~~~~~~~~~pY~l~Yv 343 (343)
T cd02666 324 SEVFLFTLGNTATPYFLVYV 343 (343)
T ss_pred HHHhhcccCCCCCCEEEEeC
Confidence 8875 4799999994
No 34
>KOG1863|consensus
Probab=99.62 E-value=2.1e-16 Score=172.02 Aligned_cols=146 Identities=31% Similarity=0.420 Sum_probs=119.1
Q ss_pred cCCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------cc-----------
Q psy2608 150 QTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RL----------- 212 (321)
Q Consensus 150 ~~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~----------- 212 (321)
.++..+|.++|+.|++.|+|.|+|+ +|..|...+.|.|.+.+.+||++|.|||+||.+.. |+
T Consensus 314 ~~g~~nl~~sf~~y~~~E~l~gdn~-~~~~~~~~~~a~k~~~f~~lPpvl~~qL~Rf~~~~~~~~~~Ki~d~~~fp~~i~ 392 (1093)
T KOG1863|consen 314 GKGVKNLEDSLHLYFEAEILLGDNK-YDAECHGLQDAKKGVLFDSLPPVLFIQLMRFEYDFSTGQKIKINDKFEFPLIID 392 (1093)
T ss_pred ccchhhHHHHHHHhhhHHHhcCCcc-ccccccchhhhhcceeeccCCchhhhhhhheeeeccCCceeehhhccCCccccc
Confidence 4556789999999999999999999 89999999999999999999999999999998632 22
Q ss_pred -----c--cCCCCCC-ceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCccc----------C----
Q psy2608 213 -----T--RGHDPFD-LKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMD----------T---- 269 (321)
Q Consensus 213 -----~--~~~~~~~-~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~----------~---- 269 (321)
. ....... +.|+|+||.+|.|..++|||++|++.. .++|++|||..|..+++.++. .
T Consensus 393 ~d~~~~~~~~~~~~~~~~y~l~~v~vh~g~~~~ghy~~~i~~~~~~~w~kfdd~~v~~~~~~~~l~~~~g~~~~~~~~~~ 472 (1093)
T KOG1863|consen 393 MDRYLSRFKAEESERSAVYSLHAVLVHSGDAHSGHYVAYINPKLDGKWVKFDDLVVTVVSEKEALEQNYGTEEIELSSTA 472 (1093)
T ss_pred cchhccccchhhhhccceeccchhhcccccccCccceeeecchhhccceeccCceeeeccHHHHHHhhCCCcchhhhccc
Confidence 0 0111122 499999999998889999999999966 999999999999999976652 1
Q ss_pred --CCcEEEEEEEcCCCCCCCCCCCCccccC
Q psy2608 270 --SCAYMLFYERKDLDLGAYLPDVSEREMT 297 (321)
Q Consensus 270 --~~AYiLfY~R~~~~~~~~~p~~~~~~~~ 297 (321)
..||+|+|.|.+ .....+..+.+..+|
T Consensus 473 ~~~~~~~lv~~~~s-~~~~~~~~v~e~~i~ 501 (1093)
T KOG1863|consen 473 DFKNAYMLVYIRDS-CESKILKDISESSIP 501 (1093)
T ss_pred ccCCcceEEEEecC-cHHhhhcccchhhcc
Confidence 238999999987 455555556666656
No 35
>PF13423 UCH_1: Ubiquitin carboxyl-terminal hydrolase
Probab=99.50 E-value=8.7e-14 Score=131.44 Aligned_cols=105 Identities=28% Similarity=0.489 Sum_probs=86.2
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc--------ccc-----------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS--------HRL----------- 212 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~--------~k~----------- 212 (321)
..+++.++|+.++..|+... ..|++|++.+.+..+..|.+||+||.|.++++... .++
T Consensus 161 ~~~tf~~~Le~sl~~e~~~~---a~C~~C~~~~~~~~~r~i~~LPpVL~In~~~~~~~~~w~~~~~~~~~ip~~i~~~~~ 237 (295)
T PF13423_consen 161 SNVTFSQVLEHSLNREQQTR---AWCEKCNKYQPTEQRRTIRSLPPVLSINLNRYSEEEFWPKKNWLKIWIPPSINLPHF 237 (295)
T ss_pred ccchHHHHHHHHHhhccccc---ccccccccccceeeeeeccCCCcEEEEEccCCCcccccccccCCceecceeeecccc
Confidence 36799999999999988844 78999999999999999999999999999876433 010
Q ss_pred -ccC------CCCCCceeEEeEEEEeecc-CCCceeEEEEECC---CCcEEEEcCCce
Q psy2608 213 -TRG------HDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNP---NGKWYAYNDSSC 259 (321)
Q Consensus 213 -~~~------~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~---~~~W~~fnDs~V 259 (321)
... ......+|+|.|+|+|.|+ .++|||+|++|.. +.+||.|||..|
T Consensus 238 ~~~~~~~~~~~~~~~~~Y~L~~~V~~i~~~~~~~HlVs~vrv~~~~~~~W~lFNDflV 295 (295)
T PF13423_consen 238 IADDSQSDLEGESGIFKYELRSMVCHIGDSIESGHLVSLVRVGPSDDSQWYLFNDFLV 295 (295)
T ss_pred ccccccccccCCCCceEEEEEEEEEEecCCCCCCceEEEEEcCCCCCCcEEEECcEeC
Confidence 000 1334569999999999996 8999999999986 379999999765
No 36
>KOG1871|consensus
Probab=99.39 E-value=2.3e-13 Score=130.06 Aligned_cols=125 Identities=26% Similarity=0.362 Sum_probs=102.2
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc-----ccc---------------
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS-----HRL--------------- 212 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~-----~k~--------------- 212 (321)
--+++++|+.|...|.+.+ +-.+-+....|.+++.|.+||++|++|||||.+. +|+
T Consensus 264 i~sv~~ales~~~re~lp~----~st~s~~eV~~s~q~~leklp~vlilhlkrF~ye~tgg~~k~~K~i~~~~~l~i~~~ 339 (420)
T KOG1871|consen 264 IHSVQDALESLVARESLPG----YSTKSGQEVEASSQTTLEKLPPVLILHLKRFVYEKTGGARKLGKKIEYPWTLKISKN 339 (420)
T ss_pred cCCHHHHhhccChhhcccc----eecCCCCeechhhhhhHhhcchhhhhhhhHHHHHhccchhhhchhhhccceeeechh
Confidence 3589999999999999855 3443577889999999999999999999999652 111
Q ss_pred ------ccCCCCCCceeEEeEEEEeec-cCCCceeEEEEECC-CCcEEEEcCCceeEeCCCccc----CCCcEEEEEEEc
Q psy2608 213 ------TRGHDPFDLKYSLYAIVCHSG-ILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMD----TSCAYMLFYERK 280 (321)
Q Consensus 213 ------~~~~~~~~~~Y~L~aVv~H~G-~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~----~~~AYiLfY~R~ 280 (321)
..........|+|.||+.|.| +..+|||++-+... -+.|+.+||..|..+..++|. +.+||+|+|+|.
T Consensus 340 ~~s~gvk~~~~~~~~~yks~~vvyhtgtsatvghYl~dv~~s~~~gw~rIDD~~i~~v~q~dv~~~t~~r~~yllyY~~~ 419 (420)
T KOG1871|consen 340 CFSQGLKIRILIATRPYKSLAVVYHTGTSATVGHYLEDVSRSVPSGWQRIDDALILFVAQEDVEKVTGSRTPYLLYYIEA 419 (420)
T ss_pred hhccccchhhhccccccceEEEEEecccccccCceEEeeeecccCceeEeccceeeeccHhhhccccCccchheeEeeec
Confidence 001123456799999999999 48999999999766 788999999999999999885 578999999986
Q ss_pred C
Q psy2608 281 D 281 (321)
Q Consensus 281 ~ 281 (321)
+
T Consensus 420 d 420 (420)
T KOG1871|consen 420 D 420 (420)
T ss_pred C
Confidence 4
No 37
>KOG1872|consensus
Probab=99.29 E-value=2.7e-12 Score=125.47 Aligned_cols=63 Identities=27% Similarity=0.474 Sum_probs=57.1
Q ss_pred CceeEEeEEEEeec-cCCCceeEEEEECCCCcEEEEcCCceeEeCCCccc-------CCCcEEEEEEEcCC
Q psy2608 220 DLKYSLYAIVCHSG-ILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMD-------TSCAYMLFYERKDL 282 (321)
Q Consensus 220 ~~~Y~L~aVv~H~G-~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~-------~~~AYiLfY~R~~~ 282 (321)
...|+|.||+.|.| +..+|||+|++|++++.|+.|||..|+-+.++.|. ..+||||.|.-+.+
T Consensus 401 ~g~y~l~~vithkgrss~sghy~aw~r~s~~~w~~fdd~~vs~v~~e~i~~lsgggd~~~ayvllyk~~~l 471 (473)
T KOG1872|consen 401 SGLYDLQLVITHKGRSSKSGHYVAWNRVSEDKWGHFDDDMVSFVLGETILSLSGGGDWHSAYVLLYKARVL 471 (473)
T ss_pred cceeeeeEeeeccccccCCCcceEEEeccCCceeeccccccccccccceeeecCCCccchhhheeeccccc
Confidence 45799999999999 58999999999999889999999999999999985 58999999986654
No 38
>KOG1275|consensus
Probab=98.60 E-value=1.4e-07 Score=98.51 Aligned_cols=104 Identities=21% Similarity=0.343 Sum_probs=81.9
Q ss_pred cccCCCCCcceeeEEEEEEeecCCeEEEEeeee-------ecccc-----c----------------------ccC----
Q psy2608 174 KYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTT-------VQSHR-----L----------------------TRG---- 215 (321)
Q Consensus 174 ~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf-------~~~~k-----~----------------------~~~---- 215 (321)
.-.|+.|.++++...+..+..||++|.|...-+ ...+. + ...
T Consensus 701 ~~~C~~C~k~ep~~q~~~vr~LPd~L~in~~~~~~~~~~~~a~q~~~~~~vWLP~~~~~~~~k~~~~~v~~~s~~~~~~~ 780 (1118)
T KOG1275|consen 701 QAWCETCTKPEPTSQKKNVRSLPDCLSINTCLNVHELVDFWARQNKLLEDVWLPEWFHMIISKNKAQLVSTISDLDVSPL 780 (1118)
T ss_pred ccccccccCCCCcccccccccCcceeeeeeeccchhhhhhHHHhhccccccccchheeEEEecccceeeeeeccccCCCC
Confidence 357999999999999999999999999998421 11110 0 000
Q ss_pred ---CCCCCceeEEeEEEEeecc-CCCceeEEEEECC---------CCcEEEEcCCceeEeCCCccc-----CCCcEEEEE
Q psy2608 216 ---HDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNP---------NGKWYAYNDSSCRQVSSGEMD-----TSCAYMLFY 277 (321)
Q Consensus 216 ---~~~~~~~Y~L~aVv~H~G~-~~~GHY~ay~k~~---------~~~W~~fnDs~V~~v~~~~v~-----~~~AYiLfY 277 (321)
..+.-.+|+|.|+|.|.|+ -+.+|.++++|.. +.+||.|||..|+++++++.+ .+.+-||+|
T Consensus 781 ~~~d~~~~~vYeL~a~V~~I~d~~~e~~lVs~Ikv~~~~~~~~~~dsqWylFNDfLV~~ite~EAl~~~~~WKvP~Il~Y 860 (1118)
T KOG1275|consen 781 PDYDEPSAVVYELDAMVHAIGDNENEVNLVSPIKVLRPYHVIKPDDSQWYLFNDFLVSEITEEEALHFDGPWKVPAILYY 860 (1118)
T ss_pred ccccCCceEEEEeeeEEEEeccCCCccceEEEEEccCcccccCcCcceeEEEcceeeeeCChHHheEeccCccCcEEEEE
Confidence 1122368999999999996 6999999999842 369999999999999998874 589999999
No 39
>KOG2026|consensus
Probab=98.58 E-value=1.3e-08 Score=97.66 Aligned_cols=116 Identities=20% Similarity=0.272 Sum_probs=89.6
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccccc--------------------
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSHRL-------------------- 212 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~k~-------------------- 212 (321)
.+.|.+.|..|...-.- + + .....| +++.+.++|++||+|++||.+++-.
T Consensus 302 QV~l~~lL~Kf~g~t~~-e---~-----~~~~~~-~rf~l~k~P~ylifh~~rF~kNn~f~ekNpTl~~f~~~~~~~~~~ 371 (442)
T KOG2026|consen 302 QVALFDLLKKFDGETVT-E---V-----VTPKLA-MRFRLTKLPRYLIFHMKRFKKNNFFKEKNPTLVEFPYSEVDILHV 371 (442)
T ss_pred cchHHHHHHHhcCceee-e---e-----cchhhh-hheeeecCCceEEEEeeeccccCcccccCCceeeccCCccchhhh
Confidence 47899999999854221 1 1 122334 8999999999999999999875422
Q ss_pred ---ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEc
Q psy2608 213 ---TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERK 280 (321)
Q Consensus 213 ---~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~ 280 (321)
.......-..|.|.|-+.|- -..|||...+++. .++||..+|-+|++..++-|.-+.+||-+|++.
T Consensus 372 ~~~~~~~~~~~~~~~~~~N~i~~--~e~~~~riqi~~~~s~kW~eiqdl~v~e~~~qmi~L~Es~iQiwe~~ 441 (442)
T KOG2026|consen 372 LDRLKAVNHKVTQYSLVANAIHE--DEDGNFRIQIYDNSSEKWYEIQDLHVTERLPQMIFLKESFIQIWEKQ 441 (442)
T ss_pred hhhcccccCccccccchhhhhcC--cccCceEEEEEeCCCcceEEecccchhhhhhHHHHHHHHHHHHHhcc
Confidence 00111222578888888885 6789999999887 899999999999999999999999999999875
No 40
>PF15499 Peptidase_C98: Ubiquitin-specific peptidase-like, SUMO isopeptidase
Probab=97.06 E-value=0.00042 Score=63.99 Aligned_cols=80 Identities=16% Similarity=0.375 Sum_probs=57.5
Q ss_pred ccCCCCCcceeeEEEEEEeecCCeEEEEeee-eeccccc-ccCCCCCCceeEEeEEEEeeccCCCceeEEEEECCCCcEE
Q psy2608 175 YYCPKCKTHQLASKKLEIYRLPPVLIVLRNT-TVQSHRL-TRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNPNGKWY 252 (321)
Q Consensus 175 ~~C~~C~~~~~a~k~~~i~~lP~vLiihLkR-f~~~~k~-~~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~~~~W~ 252 (321)
--|.+|+.+ ...++|.+.++|+|+.+|+-. .-. +.+ .....-.+..|++.+||--.- +.-|+++++++++|.|.
T Consensus 171 ~pCn~C~~k-sQ~rkMvlekv~~vfmLHFVeGLP~-ndl~~ysF~feg~~Y~Vt~VIQY~~--~~~HFvtWi~~~dGsWL 246 (275)
T PF15499_consen 171 GPCNSCNSK-SQRRKMVLEKVPPVFMLHFVEGLPH-NDLQHYSFHFEGCLYQVTSVIQYQA--NLNHFVTWIRDSDGSWL 246 (275)
T ss_pred CCCcccCCh-HHhHhhhhhcCchhhhhhhhccCCc-cCCCccceeecCeeEEEEEEEEEec--cCceeEEEEEcCCCCeE
Confidence 359999864 456789999999999999820 000 000 111122456899999987654 36899999999999999
Q ss_pred EEcCCc
Q psy2608 253 AYNDSS 258 (321)
Q Consensus 253 ~fnDs~ 258 (321)
.+||-+
T Consensus 247 ecDDLk 252 (275)
T PF15499_consen 247 ECDDLK 252 (275)
T ss_pred eeccCC
Confidence 999954
No 41
>PF05408 Peptidase_C28: Foot-and-mouth virus L-proteinase; InterPro: IPR008739 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C28 (clan CA).The protein fold of the peptidase unit for members of this family resembles that of papain. The leader peptidase of Foot-and-mouth disease virus cleaves itself from the growing polyprotein and also cleaves the host translation initiation factor 4GI (eIF4G), thus inhibiting 5'-cap dependent translation [].; GO: 0004197 cysteine-type endopeptidase activity, 0016032 viral reproduction, 0019082 viral protein processing; PDB: 2JQF_R 1QMY_B 1QOL_G 2JQG_R.
Probab=79.92 E-value=2.3 Score=37.79 Aligned_cols=41 Identities=22% Similarity=0.338 Sum_probs=29.1
Q ss_pred CCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcC
Q psy2608 235 LGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKD 281 (321)
Q Consensus 235 ~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~ 281 (321)
-+.||.+.+++. .+.||.|||+.+-+-+++.- =+|.|..-+
T Consensus 136 ~g~~Havfa~~t-s~gWy~iDDe~~y~~tPdp~-----~VLvfvp~D 176 (193)
T PF05408_consen 136 KGQEHAVFACVT-SDGWYAIDDEDFYPWTPDPS-----DVLVFVPYD 176 (193)
T ss_dssp ESTTEEEEEEEE-TTCEEEEETTEEEE----GG-----GEEEEEESS
T ss_pred cCCcceEEEEEe-eCcEEEecCCeeeeCCCChh-----heEEEcccC
Confidence 467999999887 68899999999988776543 246677655
No 42
>COG3478 Predicted nucleic-acid-binding protein containing a Zn-ribbon domain [General function prediction only]
Probab=67.87 E-value=4.8 Score=29.63 Aligned_cols=36 Identities=22% Similarity=0.478 Sum_probs=27.7
Q ss_pred CCcccCCCCCcceeeEEEEEE--eecCCeEEEEeeeee
Q psy2608 172 NEKYYCPKCKTHQLASKKLEI--YRLPPVLIVLRNTTV 207 (321)
Q Consensus 172 ~~~~~C~~C~~~~~a~k~~~i--~~lP~vLiihLkRf~ 207 (321)
.+.|.|++|+.+.-..|.+.. -.+..++=||.|+|.
T Consensus 2 ~~~~kCpKCgn~~~~ekei~~tg~~lskifdvq~n~f~ 39 (68)
T COG3478 2 KNAFKCPKCGNTNYEEKEIAATGGGLSKIFDVQNNKFI 39 (68)
T ss_pred CccccCCCcCCcchhhceeeccCCCcceeEEecccEEE
Confidence 357889999987666666555 468889999999885
No 43
>TIGR03180 UraD_2 OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model. This model is a separate (but related) clade from that represented by TIGR3164. This model places a second homolog in streptomyces species which (are not in the vicinity of other urate catabolism associated genes) below the trusted cutoff.
Probab=65.48 E-value=6.7 Score=34.00 Aligned_cols=27 Identities=11% Similarity=0.313 Sum_probs=23.2
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHHh
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQVA 45 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~~ 45 (321)
-||.||||.+. +.|.+++...++.|+.
T Consensus 106 kFGfpFii~v~-g~s~~~IL~~l~~Rl~ 132 (158)
T TIGR03180 106 KFGRIFLIRAA-GRSAEEMLDALQARLP 132 (158)
T ss_pred HCCCeEEEeeC-CCCHHHHHHHHHHHhC
Confidence 49999999886 7889999999888764
No 44
>PRK13798 putative OHCU decarboxylase; Provisional
Probab=58.92 E-value=9.9 Score=33.22 Aligned_cols=27 Identities=11% Similarity=0.300 Sum_probs=22.4
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHHh
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQVA 45 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~~ 45 (321)
-||.||||.+. +.|.+++...+..|+.
T Consensus 111 kFGfpFii~v~-g~s~~~IL~~l~~Rl~ 137 (166)
T PRK13798 111 KFGFVFLICAT-GRSADEMLAALQQRLH 137 (166)
T ss_pred hCCCeEEEeeC-CCCHHHHHHHHHHHhc
Confidence 49999999985 5588999999888764
No 45
>PF01473 CW_binding_1: Putative cell wall binding repeat; InterPro: IPR018337 The cell wall-binding repeat (CW) is an about 20 amino acid residue module, essentially found in two bacterial Gram-positive protein families; the choline binding proteins and glucosyltransferases (2.4.1.5 from EC). In choline-binding proteins cell wall binding repeats bind to choline moieties of both teichoic and lipoteichoic acids, two components peculiar to the cell surface of Gram-positive bacteria [, ]. In glucosyltransferases the region spanning the CW repeats is a glucan binding domain []. Several crystal structures of CW have been solved [, ]. In the choline binding protein LytA, the repeats adopt a solenoid fold consisting exclusively of beta-hairpins that stack to form a left-handed superhelix with a boomerang-like shape. The choline groups bind between beta-hairpin 'steps' of the superhelix []. In Cpl-1 CW repeats assemble in two sub-domains: an N-terminal superhelical moiety similar to the LytA one and a C-terminal beta-sheet involved in interactions with the lysozyme domain. Choline is bound between repeats 1 and 2, and, 2 and 3 of the superhelical sub-domain []. Some proteins known to contain cell-wall binding repeats include: Pneumococcal N-acetylmuramoyl-L-alanine amidase (autolysin, lytA) (3.5.1.28 from EC). It is a surface-exposed enzyme that rules the self-destruction of pneumococcal cells through degradation of their peptidoglycan backbone. It mediates the release of toxic substances that damage the host tissues. Pneumococcal endo-beta-N-acetylglucosaminidase (lytB) (3.2.1.96 from EC). It plays an important role in cell wall degradation and cell separation. Pneumococcal teichoic acid phosphorylcholine esterase (pce or cbpE), a cell wall hydrolase important for cellular adhesion and colonisation. Lactobacillales glucosyltransferase. It catalyses the transfer of glucosyl units from the cleavage of sucrose to a growing chain of glucan. Clostridium difficile toxin A (tcdA) and toxin B (tcdb). They are the causative agents of the antibiotic-associated pseudomembranous colitis. They are intracellular acting toxins that reach their targets after receptor-mediated endocytosis. Clostridium acetobutylicum cspA protein. Siphoviridae bacteriophages N-acetylmuramoyl-L-alanine amidase. It lyses the bacterial host cell wall. Podoviridae lysozyme protein (cpl-1). It is capable of digesting the pneumococcal cell wall. The cell wall binding repeats are also known as the choline-binding repeats (ChBr) or the choline-binding domain (ChBD). ; PDB: 1GVM_C 2BML_B 1HCX_A 1OBA_A 1H09_A 2J8F_A 2IXU_A 2J8G_A 2IXV_A 2X8O_A ....
Probab=58.83 E-value=7.9 Score=21.12 Aligned_cols=14 Identities=29% Similarity=1.049 Sum_probs=10.4
Q ss_pred EEECCCCcEEEEcCC
Q psy2608 243 YALNPNGKWYAYNDS 257 (321)
Q Consensus 243 y~k~~~~~W~~fnDs 257 (321)
+++. ++.||+|+++
T Consensus 3 W~~~-~~~wYy~~~~ 16 (19)
T PF01473_consen 3 WVQD-NGNWYYFDSD 16 (19)
T ss_dssp EEEE-TTEEEEETTT
T ss_pred CEEE-CCEEEEeCCC
Confidence 4444 7999999875
No 46
>TIGR03164 UHCUDC OHCU decarboxylase. Previously thought to only proceed spontaneously, the decarboxylation of 2-oxo-4-hydroxy-4-carboxy--5-ureidoimidazoline (OHCU) has been recently been shown to be catalyzed by this enzyme in Mus musculus. Homologs of this enzyme are found adjacent to and fused with uricase in a number of prokaryotes and are represented by this model.
Probab=56.21 E-value=12 Score=32.40 Aligned_cols=27 Identities=26% Similarity=0.432 Sum_probs=22.5
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHHh
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQVA 45 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~~ 45 (321)
-||.||||.+. +.|.+++-..++.|+.
T Consensus 106 kFGfpFvi~v~-g~~~~~Il~~l~~Rl~ 132 (157)
T TIGR03164 106 RFGFPFIMAVK-GKTKQSILAAFEARLN 132 (157)
T ss_pred HCCCeeEEeeC-CCCHHHHHHHHHHHHC
Confidence 49999999985 5588999999888764
No 47
>PF09349 OHCU_decarbox: OHCU decarboxylase; InterPro: IPR018020 The proteins in this entry are OHCU decarboxylase, an enzyme of the purine catabolism that catalyses the conversion of OHCU into S(+)-allantoin []; it is the third step of the conversion of uric acid (a purine derivative) to allantoin. Step one is catalysed by urate oxidase (IPR002042 from INTERPRO) and step two is catalysed by hydroxyisourate hydrolase (IPR000895 from INTERPRO). ; PDB: 3O7I_B 3O7H_B 3O7J_A 3O7K_A 2Q37_A 2O70_B 2O73_C 2O74_C 2O8I_A.
Probab=50.08 E-value=11 Score=32.50 Aligned_cols=26 Identities=15% Similarity=0.382 Sum_probs=15.0
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHH
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQV 44 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~ 44 (321)
-||.||||.+. +.|.+++...++.|+
T Consensus 109 kFGf~Fvi~~~-g~s~~~Il~~l~~Rl 134 (159)
T PF09349_consen 109 KFGFPFVICAR-GRSAAEILAALERRL 134 (159)
T ss_dssp HHSS-----GT-T--HHHHHHHHHHHT
T ss_pred HcCCceEeecC-CCCHHHHHHHHHHHh
Confidence 49999999885 677788888887765
No 48
>cd06404 PB1_aPKC PB1 domain is an essential modular domain of the atypical protein kinase C (aPKC) which in complex with Par6 and Par3 proteins is crucial for establishment of apical-basal polarity of animal cells. PB1 domain is a modular domain mediating specific protein-protein interaction which play roles in many critical cell processes. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi,
Probab=46.86 E-value=66 Score=24.97 Aligned_cols=47 Identities=23% Similarity=0.363 Sum_probs=34.2
Q ss_pred cccceEEecCCCCCHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCcccceEEEEeCCCCCccc
Q psy2608 19 FGIPVIVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPNHAMDCDDSLGYEYPFVLKAITPDGMQCS 88 (321)
Q Consensus 19 fG~Pl~~~~~~~~t~~~Ly~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~l~~v~~~g~~c~ 88 (321)
-|-=++++++..+|.++|-+. |+++.+-. ...||+++.+|.+|..|.
T Consensus 8 ~gdi~it~~d~~~s~e~L~~~----v~~~c~~~-------------------~~q~ft~kw~DEEGDp~t 54 (83)
T cd06404 8 NGDIMITSIDPSISLEELCNE----VRDMCRFH-------------------NDQPFTLKWIDEEGDPCT 54 (83)
T ss_pred cCcEEEEEcCCCcCHHHHHHH----HHHHhCCC-------------------CCCcEEEEEECCCCCcee
Confidence 355566788888898877776 66665421 126899999999999887
No 49
>PF02099 Josephin: Josephin; InterPro: IPR006155 Human genes containing triplet repeats can markedly expand in length, leading to neuropsychiatric disease. Expansion of triplet repeats explains the phenomenon of anticipation, i.e. the increasing severity or earlier age of onset in successive generations in a pedigree []. A novel gene containing CAG repeats has been identified and mapped to chromosome 14q32.1, the genetic locus for Machado-Joseph disease (MJD). Normally, the gene contains 13-36 CAG repeats, but most clinically diagnosed patients and all affected members of a family with the clinical and pathological diagnosis of MJD show expansion of the repeat number, from 68-79 []. Similar abnormalities in related genes may give rise to diseases similar to MJD. MJD is a neurodegenerative disorder characterised by cerebellar ataxia, pyramidal and extra-pyramidal signs, peripheral nerve palsy, external ophtalmoplegia, facial and lingual fasciculation and bulging. The disease is autosomal dominant, with late onset of symptoms, generally after the fourth decade.; GO: 0008242 omega peptidase activity; PDB: 3O65_G 1YZB_A 2JRI_A 2DOS_A 2AGA_A.
Probab=38.75 E-value=41 Score=29.10 Aligned_cols=32 Identities=16% Similarity=0.501 Sum_probs=25.2
Q ss_pred EeEEEEeeccCCCceeEEEEECCCCcEEEEcCCceeE
Q psy2608 225 LYAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQ 261 (321)
Q Consensus 225 L~aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~ 261 (321)
..|.|++ ...|++|..|- +|.||.+|-..-.|
T Consensus 99 ~~gfI~N----~~~HWf~iRki-~~~wyNLDS~l~~P 130 (157)
T PF02099_consen 99 EFGFICN----LSRHWFAIRKI-GGQWYNLDSKLKEP 130 (157)
T ss_dssp SSEEEEE----CTTEEEEEEEE-TTEEEEECTTTSS-
T ss_pred ceEEEec----cCcceEEEEee-CCeeEeccCCCCCC
Confidence 4678888 66899999887 89999999766544
No 50
>COG3195 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.16 E-value=36 Score=29.88 Aligned_cols=26 Identities=23% Similarity=0.434 Sum_probs=20.2
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHH
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQV 44 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~ 44 (321)
.||.|+|+.|. +.+.+++..+...|+
T Consensus 119 rFgfPfI~aVk-g~~k~~Il~a~~~Rl 144 (176)
T COG3195 119 RFGFPFIIAVK-GNTKDTILAAFERRL 144 (176)
T ss_pred hcCCceEEeec-CCCHHHHHHHHHHHh
Confidence 59999999884 667888888765554
No 51
>KOG1887|consensus
Probab=35.90 E-value=37 Score=36.60 Aligned_cols=70 Identities=21% Similarity=0.305 Sum_probs=46.7
Q ss_pred EEEEeecCCeEEEEeeeeeccccc------------------cc-CCCCCCceeEEeEEEEeeccCCCceeEEEEECCCC
Q psy2608 189 KLEIYRLPPVLIVLRNTTVQSHRL------------------TR-GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNPNG 249 (321)
Q Consensus 189 ~~~i~~lP~vLiihLkRf~~~~k~------------------~~-~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~~~ 249 (321)
...|.+.|++.+|.|. |.++... .. ........|+|++++.-.+. +++|.+++.. .+
T Consensus 675 ~h~is~~P~vftIvle-wEk~ETe~eI~~T~~aL~teidis~~y~~g~ep~t~yrLVSmv~~~e~--~~~~~C~Aye-~N 750 (806)
T KOG1887|consen 675 HHILSPCPPVFTIVLE-WEKSETEKEISETTKALATEIDISRLYREGLEPNTKYRLVSMVGNHEE--GEEYICFAYE-PN 750 (806)
T ss_pred hhhcCCCCCeeEeeee-hhcccchHHHHHHHHHHHhhhhHHHHhhhccCcCceeEEEEEeeeccc--cceEEEeecc-CC
Confidence 4467789999999663 2221111 11 12234568999999865443 7999999976 68
Q ss_pred cEE--EEcCCceeEe
Q psy2608 250 KWY--AYNDSSCRQV 262 (321)
Q Consensus 250 ~W~--~fnDs~V~~v 262 (321)
+|. ..+|..+..+
T Consensus 751 rwvs~r~~~~~~e~i 765 (806)
T KOG1887|consen 751 RWVSLRHEDSQGEVV 765 (806)
T ss_pred cchhhHHHHHHhhhc
Confidence 888 7888776555
No 52
>PF00770 Peptidase_C5: Adenovirus endoprotease; InterPro: IPR000855 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine aminopeptidases belong to the peptidase family C5 (adenain family, clan CE). Several adenovirus proteins are synthesised as precursors, requiring processing by a protease before the virion is assembled [, ]. Until recently, the adenovirus endopeptidase was classified as a serine protease, having been reported to be inhibited by serine protease inhibitors [, ]. However, it has since been shown to be inhibited by cysteine protease inhibitors, and the catalytic residues are believed to be His-54 and Cys-104 [, ].; GO: 0004197 cysteine-type endopeptidase activity, 0006508 proteolysis; PDB: 1NLN_A 1AVP_A.
Probab=33.99 E-value=50 Score=29.19 Aligned_cols=31 Identities=32% Similarity=0.724 Sum_probs=20.9
Q ss_pred eEEEEeecc-CCCceeEEEEECC-CCcEEEEcC
Q psy2608 226 YAIVCHSGI-LGGGHYVSYALNP-NGKWYAYND 256 (321)
Q Consensus 226 ~aVv~H~G~-~~~GHY~ay~k~~-~~~W~~fnD 256 (321)
.||||--|. .+|=|+.|++.++ ..+-|.||-
T Consensus 21 cAIVNT~~retGGvHWlA~Aw~P~s~t~YmFDP 53 (183)
T PF00770_consen 21 CAIVNTGGRETGGVHWLAFAWDPRSRTFYMFDP 53 (183)
T ss_dssp EEEEESS-TTT--S-EEEEEEETTTTEEEEE-T
T ss_pred eEEEecCCcccCceeEEEEEecCCcceEEEeCC
Confidence 577776654 6777999999999 788999884
No 53
>PF11058 Ral: Antirestriction protein Ral ; InterPro: IPR022759 Ral alleviates restriction and enhances modification by the E.coli restriction and modification system [].
Probab=31.36 E-value=15 Score=26.05 Aligned_cols=16 Identities=50% Similarity=0.874 Sum_probs=13.6
Q ss_pred cCCcccccccCccccC
Q psy2608 88 SLCSWTKFCLGCKLAC 103 (321)
Q Consensus 88 ~~C~~~~~C~gC~~~~ 103 (321)
.||..+..|.||.+..
T Consensus 9 qwc~~f~~c~gckl~~ 24 (66)
T PF11058_consen 9 QWCSQFKRCNGCKLQS 24 (66)
T ss_pred hHHHhhhcccCcccch
Confidence 4888999999999864
No 54
>PF08715 Viral_protease: Papain like viral protease; InterPro: IPR014827 This family of viral proteases are similar to the papain protease and are required for proteolytic processing of the replicase polyprotein. The structure of this protein has shown it adopts a fold similar to that of de-ubiquitinating enzymes []. ; GO: 0004197 cysteine-type endopeptidase activity, 0008242 omega peptidase activity, 0016740 transferase activity; PDB: 3MP2_A 3EWP_B 3EWO_B 2FE8_A 3MJ5_B 3EKE_A 3EJF_A 3JZT_H 3ETI_E 3E9S_A.
Probab=27.71 E-value=57 Score=31.59 Aligned_cols=32 Identities=19% Similarity=0.442 Sum_probs=20.6
Q ss_pred eeccCCCceeEEEEECCCCcEEEEcCCceeEeCCCc
Q psy2608 231 HSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGE 266 (321)
Q Consensus 231 H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~ 266 (321)
-.|+.++|||+ |.+. ++. .+|-.++.+.+...
T Consensus 267 F~G~~~~GHYt-~~~~-~~~--~~Dg~~~~k~~~~~ 298 (320)
T PF08715_consen 267 FTGSTDSGHYT-HDVA-GKA--MYDGDKVKKFSDNK 298 (320)
T ss_dssp EESCTTTCEEE-EEEE-SSS--EEETTEEEEESEEE
T ss_pred EEcCCCccceE-EEcc-Cce--eEEcCcccccCccc
Confidence 57988999999 6654 233 23666666655544
No 55
>cd06408 PB1_NoxR The PB1 domain is present in the Epichloe festucae NoxR protein (NADPH oxidase regulator), a key regulator of NADPH oxidase isoform, NoxA. NoxA is essential for growth control of the fungal endophyte in plant tissue in the process of symbiotic interaction between a fungi and its plant host. The Epichloe festucae p67(phox)-like regulator, NoxR, dispensable in culture but essential in plants for the symbiotic interaction. Plants infected with a noxR deletion mutant show severe stunting and premature senescence, whereas hyphae in the meristematic tissues show increased branching leading to increased fungal colonization of pseudostem and leaf blade tissue. The PB1 domain is a modular domain mediating specific protein-protein interactions which a play role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is
Probab=27.68 E-value=1.8e+02 Score=22.69 Aligned_cols=43 Identities=9% Similarity=0.030 Sum_probs=31.2
Q ss_pred ccceEEecCCCCCHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCcccceEEEEeCCCCCccc
Q psy2608 20 GIPVIVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPNHAMDCDDSLGYEYPFVLKAITPDGMQCS 88 (321)
Q Consensus 20 G~Pl~~~~~~~~t~~~Ly~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~l~~v~~~g~~c~ 88 (321)
|-=.++.+|..++.++|++.|-.+. . ...||+++..|. |..|.
T Consensus 11 ~Dv~~i~v~~~i~f~dL~~kIrdkf----~---------------------~~~~~~iKykDE-GD~it 53 (86)
T cd06408 11 DDTRYIMIGPDTGFADFEDKIRDKF----G---------------------FKRRLKIKMKDD-GDMIT 53 (86)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHh----C---------------------CCCceEEEEEcC-CCCcc
Confidence 4444578899999999999866653 1 114799999998 76654
No 56
>cd00524 SORL Superoxide reductase-like (SORL) domain; present in a family of mononuclear non-heme iron proteins that includes superoxide reductase and desulfoferrodoxin. Superoxide reductase-like proteins scavenge superoxide anion radicals as a defense mechanism against reactive oxygen species and are found in anaerobic bacteria and archeae, and microaerophilic Treponema pallidum. The SORL domain contains an active iron site, Fe[His4Cys(Glu)], which in the reduced state loses the glutamate ligand. Superoxide reductase (class II) forms a homotetramer with four Fe[His4Cys(Glu)] centers. Desulfoferrodoxin (class I) is a homodimeric protein, with each protomer comprised of two domains, the N-terminal desulforedoxin (DSRD) domain and C-terminal SORL domain. Each domain has a distinct iron center: the DSRD iron center I, Fe(S-Cys)4; and the SORL iron center II, Fe[His4Cys(Glu)].
Probab=24.37 E-value=3.2e+02 Score=20.70 Aligned_cols=47 Identities=13% Similarity=0.249 Sum_probs=32.5
Q ss_pred eEEEEeec----cCCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEEEc
Q psy2608 226 YAIVCHSG----ILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERK 280 (321)
Q Consensus 226 ~aVv~H~G----~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~ 280 (321)
..|.+..| .|..+||+.++. +.++|..|....... ...++.-|..+.
T Consensus 17 ~~v~V~vg~~~Hpm~~~HyI~wI~------l~~~d~~v~~~~l~P--~~~P~~~F~l~~ 67 (86)
T cd00524 17 FDVKVKVGSVPHPMTEEHYIEWIE------LYFGDEKVGRVELTP--GTKPEATFTVKA 67 (86)
T ss_pred CEEEEEECCccCCCCCCcEEEEEE------EEECCeEEEEEECCC--CCCCEEEEEEec
Confidence 34566667 588999999985 557776666655544 667777777664
No 57
>PF09855 DUF2082: Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082); InterPro: IPR018652 This family of proteins contains various hypothetical prokaryotic proteins as well as some Zn-ribbon nucleic-acid-binding proteins.
Probab=24.12 E-value=73 Score=23.42 Aligned_cols=32 Identities=25% Similarity=0.476 Sum_probs=16.6
Q ss_pred ccCCCCCcceeeEEEEEE--eecCCeEEEEeeee
Q psy2608 175 YYCPKCKTHQLASKKLEI--YRLPPVLIVLRNTT 206 (321)
Q Consensus 175 ~~C~~C~~~~~a~k~~~i--~~lP~vLiihLkRf 206 (321)
|.|++|+...-..+++.. --+-.++=|+.++|
T Consensus 1 y~C~KCg~~~~e~~~v~~tgg~~skiFdvq~~~f 34 (64)
T PF09855_consen 1 YKCPKCGNEEYESGEVRATGGGLSKIFDVQNKKF 34 (64)
T ss_pred CCCCCCCCcceecceEEccCCeeEEEEEecCcEE
Confidence 689999875433333332 11223444555555
No 58
>cd06406 PB1_P67 A PB1 domain is present in p67 proteins which forms a signaling complex with p40, a crucial step for activation of NADPH oxidase during phagocytosis. PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes . A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is conserved in amoebas, fungi, animals, and plants. The p67 proteins contain
Probab=23.94 E-value=1e+02 Score=23.74 Aligned_cols=26 Identities=15% Similarity=0.208 Sum_probs=21.3
Q ss_pred cccceEEecCCCCCHHHHHHHHHHHH
Q psy2608 19 FGIPVIVPCSDTTTQQDLYQAVWLQV 44 (321)
Q Consensus 19 fG~Pl~~~~~~~~t~~~Ly~~v~~~~ 44 (321)
|--=++|++|++.+.++|++.|-.++
T Consensus 9 f~~tIaIrvp~~~~y~~L~~ki~~kL 34 (80)
T cd06406 9 FKYTVAIQVARGLSYATLLQKISSKL 34 (80)
T ss_pred EEEEEEEEcCCCCCHHHHHHHHHHHh
Confidence 33356689999999999999988775
No 59
>cd06407 PB1_NLP A PB1 domain is present in NIN like proteins (NLP), a key enzyme in a process of establishment of symbiosis betweeen legumes and nitrogen fixing bacteria (Rhizobium). The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes like osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-inte
Probab=23.56 E-value=2.5e+02 Score=21.46 Aligned_cols=42 Identities=14% Similarity=-0.023 Sum_probs=30.8
Q ss_pred EEecCCCCCHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCcccceEEEEeCCCCCccc
Q psy2608 24 IVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPNHAMDCDDSLGYEYPFVLKAITPDGMQCS 88 (321)
Q Consensus 24 ~~~~~~~~t~~~Ly~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~l~~v~~~g~~c~ 88 (321)
.+++|+..+.++|++.|-.+. +.. . .-+|+|+-.|.+|.+|.
T Consensus 13 r~~l~~~~~~~~L~~~i~~r~----~~~---~----------------~~~f~LkY~Ddegd~v~ 54 (82)
T cd06407 13 RFRLPPSWGFTELKQEIAKRF----KLD---D----------------MSAFDLKYLDDDEEWVL 54 (82)
T ss_pred EEEcCCCCCHHHHHHHHHHHh----CCC---C----------------CCeeEEEEECCCCCeEE
Confidence 357788899999999965543 210 0 13699999999998886
No 60
>PRK13797 putative bifunctional allantoicase/OHCU decarboxylase; Provisional
Probab=22.82 E-value=78 Score=32.72 Aligned_cols=27 Identities=15% Similarity=0.330 Sum_probs=22.2
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHHh
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQVA 45 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~~ 45 (321)
-||.||||.+. +.|.+++.+++..|+.
T Consensus 461 KFGFpFIIca~-G~s~~eILa~l~~RL~ 487 (516)
T PRK13797 461 RFGFIFLVRAA-GRGAEEMLELLRARLA 487 (516)
T ss_pred hCCCeEEEEEC-CCCHHHHHHHHHHHhc
Confidence 59999999885 5788999988777764
No 61
>PHA02096 hypothetical protein
Probab=21.21 E-value=68 Score=24.78 Aligned_cols=23 Identities=30% Similarity=0.544 Sum_probs=16.3
Q ss_pred eeecccCCCceecccceEEecCC
Q psy2608 7 YFLSAHKYRPILFGIPVIVPCSD 29 (321)
Q Consensus 7 y~~s~~~~~~~lfG~Pl~~~~~~ 29 (321)
|..+...-...|||.|-||.+..
T Consensus 52 ylkgt~vikkrlfg~ptiv~ink 74 (103)
T PHA02096 52 YLKGTTVIKKRLFGPPTIVSVNK 74 (103)
T ss_pred HhcccchhhhhhcCCCeEEEecC
Confidence 44444445567999999998844
No 62
>PRK13590 putative bifunctional OHCU decarboxylase/allantoate amidohydrolase; Provisional
Probab=20.22 E-value=94 Score=32.51 Aligned_cols=25 Identities=20% Similarity=0.387 Sum_probs=15.7
Q ss_pred ecccceEEecCC----CCCHHHHHHHHHH
Q psy2608 18 LFGIPVIVPCSD----TTTQQDLYQAVWL 42 (321)
Q Consensus 18 lfG~Pl~~~~~~----~~t~~~Ly~~v~~ 42 (321)
-||.||||.+.. +.|.+++...+..
T Consensus 116 kFGf~fvi~v~~~~a~g~~~~~il~~~~~ 144 (591)
T PRK13590 116 RFGFPFILAVRGPRGLGLSRQEIIATFAR 144 (591)
T ss_pred hCCCeEEEEEcCccccCCCHHHHHHHHHH
Confidence 499999998642 2455555554443
No 63
>PF04663 Phenol_monoox: Phenol hydroxylase conserved region; InterPro: IPR006756 Under aerobic conditions, phenol is usually hydroxylated to catechol and degraded via the meta or ortho pathways. Two types of phenol hydroxylase are known: one is a multi-component enzyme the other is a single-component monooxygenase. This signature is found in both types of enzymes [, ].; PDB: 3U52_F 2INN_F 2INP_E.
Probab=20.19 E-value=1.1e+02 Score=22.74 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=21.2
Q ss_pred eecccceEEecCCCCCHHHHHHHHHHHH
Q psy2608 17 ILFGIPVIVPCSDTTTQQDLYQAVWLQV 44 (321)
Q Consensus 17 ~lfG~Pl~~~~~~~~t~~~Ly~~v~~~~ 44 (321)
-||-.|+-+++|+.++..+|-+.|+.-+
T Consensus 22 llFcap~~~plpP~mpFg~l~~~vl~~~ 49 (67)
T PF04663_consen 22 LLFCAPFAFPLPPDMPFGALVEQVLPPA 49 (67)
T ss_dssp TTS-S-EEEEE-TTSBHHHHHHHTHHHH
T ss_pred eeeecceeecCCCCCcHHHHHHHhhhHh
Confidence 3799999999999999999998876543
Done!