Query psy2608
Match_columns 321
No_of_seqs 261 out of 1527
Neff 6.8
Searched_HMMs 29240
Date Fri Aug 16 20:33:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2608.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2608hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2y6e_A Ubiquitin carboxyl-term 100.0 2.8E-34 9.5E-39 275.8 16.7 133 151-283 208-361 (367)
2 3nhe_A Ubiquitin carboxyl-term 100.0 8.5E-33 2.9E-37 261.4 15.2 131 152-282 194-344 (348)
3 2gfo_A Ubiquitin carboxyl-term 100.0 8.8E-33 3E-37 269.1 13.3 129 153-281 247-396 (396)
4 3i3t_A Ubiquitin carboxyl-term 100.0 6.1E-33 2.1E-37 263.1 11.8 130 152-282 204-352 (355)
5 1nb8_A Ubiquitin carboxyl-term 100.0 3E-32 1E-36 261.3 9.3 147 152-300 149-333 (353)
6 2f1z_A Ubiquitin carboxyl-term 100.0 7.1E-31 2.4E-35 264.1 11.6 147 152-300 318-502 (522)
7 3mhs_A Ubiquitin carboxyl-term 100.0 3.9E-30 1.3E-34 255.3 14.1 131 151-282 316-475 (476)
8 2ayn_A Ubiquitin carboxyl-term 100.0 1E-28 3.4E-33 239.3 12.3 126 153-283 193-396 (404)
9 1vjv_A Ubiquitin carboxyl-term 99.9 9.3E-28 3.2E-32 234.1 12.8 124 154-282 186-415 (415)
10 3ihp_A Ubiquitin carboxyl-term 99.9 1.4E-25 4.8E-30 237.4 13.6 57 222-281 796-853 (854)
11 2vhf_A Ubiquitin carboxyl-term 98.7 1.3E-08 4.3E-13 97.6 6.7 32 221-256 275-308 (374)
12 1vd2_A Protein kinase C, IOTA 59.3 19 0.00064 27.1 5.6 46 20-88 15-60 (89)
13 3mp2_A Non-structural protein 57.0 11 0.00038 33.0 4.4 35 227-264 162-196 (211)
14 2q37_A OHCU decarboxylase; 2-O 51.4 5.8 0.0002 34.0 1.7 26 18-44 126-151 (181)
15 2ylm_A Ubiquitin carboxyl-term 50.7 12 0.00041 37.2 4.1 38 5-44 437-474 (530)
16 2o8i_A AGR_C_4230P, hypothetic 50.0 7.7 0.00026 32.6 2.2 27 18-45 110-136 (165)
17 2fe8_A PP1AB, ORF1AB, replicas 44.2 23 0.00078 32.9 4.6 37 226-264 260-296 (315)
18 2o70_A OHCU decarboxylase; URI 44.2 7.4 0.00025 33.0 1.2 26 18-44 114-139 (174)
19 3o7i_A OHCU decarboxylase; lya 41.6 10 0.00035 32.7 1.7 27 18-45 135-161 (189)
20 4ekf_A Adenain; alpha and beta 30.6 39 0.0014 29.1 3.6 31 226-256 40-72 (204)
21 1ip9_A BEM1 protein; ubiquitin 27.4 54 0.0018 24.5 3.4 23 23-45 24-46 (85)
22 2cr8_A MDM4 protein; ZF-ranbp 24.6 31 0.0011 23.3 1.5 15 170-184 7-21 (53)
23 3o65_A Putative ataxin-3-like 24.3 93 0.0032 26.6 4.8 53 225-282 110-170 (191)
No 1
>2y6e_A Ubiquitin carboxyl-terminal hydrolase 4; HET: CME; 2.40A {Homo sapiens}
Probab=100.00 E-value=2.8e-34 Score=275.80 Aligned_cols=133 Identities=39% Similarity=0.746 Sum_probs=116.3
Q ss_pred CCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc----ccc-----cc-------
Q psy2608 151 TEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS----HRL-----TR------- 214 (321)
Q Consensus 151 ~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~----~k~-----~~------- 214 (321)
...++|++||+.|+.+|.|+++|.|+|++|++++.|+|++.|++||+||+||||||.+. .|+ -+
T Consensus 208 ~~~~sL~~~L~~f~~~E~l~~~~~~~C~~C~~~~~a~K~~~i~~lP~vL~i~LkRF~~~~~~~~K~~~~v~fp~~~Ldl~ 287 (367)
T 2y6e_A 208 KTTVALRDCIELFTTMETLGEHDPWYCPNCKKHQQATKKFDLWSLPKILVVHLKRFSYNRYWRDKLDTVVEFPIRGLNMS 287 (367)
T ss_dssp --CEEHHHHHHHHTSCEECCC-CCEEETTTTEEECCEEEEEEEECCSEEEEEEECEEECSSCEEECCCCEECCSSCEECG
T ss_pred CCCCCHHHHHHHhcccccCCCCCCccCCCCCCCceEEEEEEEecCCcEEEEEEeCeeecCccceecCceEEecCCcCChh
Confidence 34689999999999999999999999999999999999999999999999999999763 233 01
Q ss_pred ----CCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcCCC
Q psy2608 215 ----GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKDLD 283 (321)
Q Consensus 215 ----~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~~~ 283 (321)
........|+|+|||+|.|++++|||+||+|+. +++||.|||+.|+++++++|.+.+||||||+|++..
T Consensus 288 ~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~~~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~~~ 361 (367)
T 2y6e_A 288 EFVCNLSARPYVYDLIAVSNHYGAMGVGHYTAYAKNKLNGKWYYFDDSNVSLASEDQIVTKAAYVLFYQRRDDE 361 (367)
T ss_dssp GGBSCSSSCCCEEEEEEEEEEECSSSSCEEEEEEECTTTCCEEEEETTEEEECCGGGTSSTTEEEEEEEECCC-
T ss_pred hhccCCCCCCceEEEEEEeecCCCCCCCeeeEEEEcCCCCeEEEECCCCceECCHHHcCCCCcEEEEEEEcCCC
Confidence 011235689999999999999999999999997 899999999999999999999999999999998843
No 2
>3nhe_A Ubiquitin carboxyl-terminal hydrolase 2; cysteine protease, substrate ENZY complex, hydrolase-protein binding complex; HET: CME; 1.26A {Homo sapiens} SCOP: d.3.1.9 PDB: 2hd5_A 3v6c_A 3v6e_A 2ibi_A
Probab=100.00 E-value=8.5e-33 Score=261.40 Aligned_cols=131 Identities=37% Similarity=0.647 Sum_probs=116.5
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----cc-----cc--------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----RL-----TR-------- 214 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----k~-----~~-------- 214 (321)
..++|++||+.|+.+|.++++|+|+|++|++++.|.|++.|.++|++|+|||+||.+.. |+ -+
T Consensus 194 ~~~sl~~~L~~~~~~e~l~~~~~~~C~~C~~~~~~~k~~~i~~lP~vL~i~lkRf~~~~~~~~K~~~~v~fp~~~ldl~~ 273 (348)
T 3nhe_A 194 PEVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFSESRIRTSKLTTFVNFPLRDLDLRE 273 (348)
T ss_dssp SCEEHHHHHHHHHSCEEECGGGCCEETTTTEECCEEEEEEEEECCSEEEEEECCBCCCSSCCCBCCCCEECCSSCEECGG
T ss_pred CCCCHHHHHHHhcCceEecCCCceECCCCCCcccEEEEEEeecCCceEEEEEEcccccCCceeecCcceeccCCcCCHhh
Confidence 35799999999999999999999999999999999999999999999999999997532 32 01
Q ss_pred --CCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcCC
Q psy2608 215 --GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKDL 282 (321)
Q Consensus 215 --~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~~ 282 (321)
........|+|+|||+|.|+..+|||+||+|++ +++||.|||+.|+++++++|.+.+||||||+|++.
T Consensus 274 ~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~~~~~~W~~~nD~~V~~v~~~~v~~~~aY~LfY~r~~~ 344 (348)
T 3nhe_A 274 FASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPGTGEWHTFNDSSVTPMSSSQVRTSDAYLLFYELASP 344 (348)
T ss_dssp GBCTTCCCCEEEEEEEEEEEECSSCEEEEEEEECTTTCCEEEEETTEEEEECGGGTCCTTEEEEEEEECC-
T ss_pred hcCCCCCCCcEEEEEEEEccCCCCCcccEEEEccCCCCcEEEEeCCCceECCHHHcCCCCceEEEEEecCC
Confidence 112345689999999999999999999999987 89999999999999999999999999999999874
No 3
>2gfo_A Ubiquitin carboxyl-terminal hydrolase 8; protease, thiol protease, UBL conjugation pathway deubiquitinating enzyme, DUB, zinc ribbon; 2.00A {Homo sapiens} SCOP: d.3.1.9 PDB: 3n3k_A
Probab=99.98 E-value=8.8e-33 Score=269.15 Aligned_cols=129 Identities=34% Similarity=0.690 Sum_probs=114.9
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----cc-----cc-C-C-----
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----RL-----TR-G-H----- 216 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----k~-----~~-~-~----- 216 (321)
..+|++||+.|+++|.|+++|.|+|++|+.++.|.|++.|++||+||+||||||.+.. |+ -+ . .
T Consensus 247 ~~sL~~~L~~f~~~E~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRF~~~~~~~~K~~~~v~fp~~~Ldl~~~ 326 (396)
T 2gfo_A 247 KCTLQDCLRLFSKEEKLTDNNRFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQY 326 (396)
T ss_dssp EEEHHHHHHHHTSCEEECSTTCEEETTTTEEECEEEEEEEEECCSEEEEEECCEEECSSSEEECCCEEECCSSCBCCGGG
T ss_pred cCCHHHHHHHhCCcccccCCcccccCCcccccceEEEEEEecCCcEEEEEecceeccCccceecCceEecchhhcccccc
Confidence 4799999999999999999999999999999999999999999999999999997642 33 01 0 0
Q ss_pred ----CCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcC
Q psy2608 217 ----DPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKD 281 (321)
Q Consensus 217 ----~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~ 281 (321)
......|+|+|||+|.|++++|||+||+|+. +++||.|||+.|+++++++|.+.+||||||+|++
T Consensus 327 ~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 396 (396)
T 2gfo_A 327 VIGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAAYILFYTSLG 396 (396)
T ss_dssp BCSCCSSCCCBEEEEEEEEESCTTTCEEEEEEEETTTTEEEEEETTEEEECCHHHHSCTTEEEEEEECC-
T ss_pred ccCCCCCCceEEEEEEEEecCCCCCCceEEEEcCCCCCCEEEEeCCCeEECCHHHcCCCCceEEEEEEcC
Confidence 1224689999999999999999999999987 7999999999999999999999999999999975
No 4
>3i3t_A Ubiquitin carboxyl-terminal hydrolase 21; hydrolase, structural genomics consortium, SGC, activator, alternative splicing, chromatin regulator, nucleus, polymorphism, protease; 2.59A {Homo sapiens} SCOP: d.3.1.0 PDB: 2y5b_A 3mtn_A
Probab=99.98 E-value=6.1e-33 Score=263.07 Aligned_cols=130 Identities=31% Similarity=0.537 Sum_probs=112.6
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc----ccc-----c--------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH----RLT-----R-------- 214 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~----k~~-----~-------- 214 (321)
+.++|++||+.|+++|.|+++|+|+|++|++++.|+|++.|+++|++|+||||||.+.. |+. +
T Consensus 204 ~~~sl~~~L~~~~~~e~l~~~n~~~C~~C~~~~~a~k~~~i~~lP~vL~i~lkRF~~~~~~~~K~~~~v~fp~~~l~l~~ 283 (355)
T 3i3t_A 204 GKVSLRDCFNLFTKEEELESENAPVCDRCRQKTRSTKKLTVQRFPRILVLHLNRFSASRGSIKKSSVGVDFPLQRLSLGD 283 (355)
T ss_dssp --CBHHHHHHHHHCCEEECGGGCCCCSSSCCCCCEEEEEEEEECCSEEEEEECCEECCSSCCEECCCCCBCCSSCEECGG
T ss_pred CccCHHHHHHHhCCccccCCCCCeeCCCCCCccceEEEEEcccCChheEEEhhheecCCCCceECCcceeCCccccCchh
Confidence 46799999999999999999999999999999999999999999999999999997632 220 0
Q ss_pred --CCCCCCceeEEeEEEEeeccCCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcCC
Q psy2608 215 --GHDPFDLKYSLYAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKDL 282 (321)
Q Consensus 215 --~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~~ 282 (321)
........|+|+|||+|.|++++|||+||+|. +++||.|||+.|+++++++|.+.+||||||+|++.
T Consensus 284 ~~~~~~~~~~Y~L~avv~H~G~~~~GHY~~~~~~-~~~W~~~nD~~V~~v~~~~v~~~~aYiLfY~r~~~ 352 (355)
T 3i3t_A 284 FASDKAGSPVYQLYALCNHSGSVHYGHYTALCRC-QTGWHVYNDSRVSPVSENQVASSEGYVLFYQLMQE 352 (355)
T ss_dssp GBC----CCEEEEEEEEEEEEETTEEEEEEEEEE-TTEEEEEETTEEEEECHHHHHTSCCSEEEEEEC--
T ss_pred hccCCCCCcceEEEEEEEecCCCCCCeEEEEEEc-CCeEEEEcCCCcEECCHHHcCCCCcEEEEEEeccC
Confidence 01123458999999999999999999999998 57899999999999999999999999999999874
No 5
>1nb8_A Ubiquitin carboxyl-terminal hydrolase 7; UBP, deubiquitination, hausp, P53 binding; 2.30A {Homo sapiens} SCOP: d.3.1.9 PDB: 1nbf_A
Probab=99.97 E-value=3e-32 Score=261.30 Aligned_cols=147 Identities=26% Similarity=0.391 Sum_probs=121.6
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc------cccc------------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS------HRLT------------ 213 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~------~k~~------------ 213 (321)
+..+|.+||+.|+.+|.|+++|.|.|+.|+ ++.|.|++.|++||++|+||||||.+. .|+.
T Consensus 149 ~~~~l~~~L~~~~~~E~l~~~~~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~K~~~~v~fp~~Ldl~ 227 (353)
T 1nb8_A 149 GKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD 227 (353)
T ss_dssp TCSBHHHHHHHHTCCEEECTTTCEECGGGC-EECEEEEEEESCCCSEEEEEECCCC--------CCCCCCCBCCSEEECG
T ss_pred CCcchHHHHHHhhCccccCCCccccCCcCc-cEeeEEEEEhhcCCCceEEEEecEEEecccCceEecCcEEECCCeeehh
Confidence 345899999999999999999999999996 689999999999999999999999753 2330
Q ss_pred ----cCCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCccc---------------CCCcE
Q psy2608 214 ----RGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMD---------------TSCAY 273 (321)
Q Consensus 214 ----~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~---------------~~~AY 273 (321)
.........|+|+|||+|.|++++|||+||+|+. +++||.|||+.|+++++++|. +.+||
T Consensus 228 ~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~gg~~~~~~~~~~~~aY 307 (353)
T 1nb8_A 228 EFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAY 307 (353)
T ss_dssp GGBSSCCTTSCCEEEEEEEEEEESSTTCCCEEEEECTTSSSCCEEEETTEEEECCHHHHTGGGSCCC-------CCEEEE
T ss_pred hhhcccCCCCCceEEEEEEEEEeCCCCCcEEEEEEecCCCCCEEEEECcceEECCHHHHHHHhcCCCccccccCcCCeEE
Confidence 0011235789999999999999999999999975 899999999999999988775 36899
Q ss_pred EEEEEEcCCCCCCCCCCCCccccCCCc
Q psy2608 274 MLFYERKDLDLGAYLPDVSEREMTDTK 300 (321)
Q Consensus 274 iLfY~R~~~~~~~~~p~~~~~~~~~~~ 300 (321)
||||+|++.. +..++++.+.++|.+.
T Consensus 308 iLfY~r~~~~-~~~~~~~~~~~~p~~~ 333 (353)
T 1nb8_A 308 MLVYIRESKL-SEVLQAVTDHDIPQQL 333 (353)
T ss_dssp EEEEEETTTH-HHHTCCCCGGGSCHHH
T ss_pred EEEEEECchh-hhhhcccCccccCHHH
Confidence 9999999843 3456677777777554
No 6
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens}
Probab=99.97 E-value=7.1e-31 Score=264.15 Aligned_cols=147 Identities=27% Similarity=0.411 Sum_probs=123.8
Q ss_pred CCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeeccc------ccc------------
Q psy2608 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSH------RLT------------ 213 (321)
Q Consensus 152 ~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~~------k~~------------ 213 (321)
+..+|.+||+.|+.+|.|+++|+|.|++|+ ++.|.|++.|++||+||+||||||.+.. |+.
T Consensus 318 ~~~~l~~~L~~~~~~E~l~~~n~~~C~~c~-~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fp~~Ldl~ 396 (522)
T 2f1z_A 318 GKKNIFESFVDYVAVEQLDGDNKYDAGEHG-LQEAEKGVKFLTLPPVLHLQLMRFMYDPQTDQNIKINDRFEFPEQLPLD 396 (522)
T ss_dssp TCCBHHHHHHHHTCEEEECTTSCBCCGGGC-SBCEEEEEEESCCCSEEEEEECCEEECSSSSCEEECCCCCBCCSEEECG
T ss_pred CcccchHHHHHhhceeecCCcceeecCcCC-ccceEEEEEeecCCceEEEEEEeEEEcccCCcceEcCcEEeCCCeecch
Confidence 446899999999999999999999999996 6899999999999999999999997532 330
Q ss_pred ----cCCCCCCceeEEeEEEEeeccCCCceeEEEEECC-CCcEEEEcCCceeEeCCCccc---------------CCCcE
Q psy2608 214 ----RGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMD---------------TSCAY 273 (321)
Q Consensus 214 ----~~~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~-~~~W~~fnDs~V~~v~~~~v~---------------~~~AY 273 (321)
.........|+|+|||+|.|++++|||+||+|+. +++||.|||+.|+++++++|. ..+||
T Consensus 397 ~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~v~~~~~~~W~~fnD~~V~~v~~~~v~~~~~Gg~~~~~~~~~~~~aY 476 (522)
T 2f1z_A 397 EFLQKTDPKDPANYILHAVLVHSGDNHGGHYVVYLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAY 476 (522)
T ss_dssp GGBSSCCTTSCCEEEEEEEEEEECSSSCSEEEEEECTTSSSCCEEEETTEEEECCHHHHSTTSSCCC--------CEEEE
T ss_pred hhhccccCCCCcEEEEEEEEEecccCCCceEEEEEecCCCCCEEEEECceeEECCHHHHHHhhcCCCccccccCcCCceE
Confidence 0011235789999999999999999999999975 899999999999999988775 36899
Q ss_pred EEEEEEcCCCCCCCCCCCCccccCCCc
Q psy2608 274 MLFYERKDLDLGAYLPDVSEREMTDTK 300 (321)
Q Consensus 274 iLfY~R~~~~~~~~~p~~~~~~~~~~~ 300 (321)
||||+|++. .+..+.++.+.++|.+.
T Consensus 477 iLfY~r~~~-~~~~~~~~~~~~ip~~~ 502 (522)
T 2f1z_A 477 MLVYIRESK-LSEVLQAVTDHDIPQQL 502 (522)
T ss_dssp EEEEEETTS-HHHHTCCCCTTTSCSHH
T ss_pred EEEEEECCc-hHHhhcccCccCCCHHH
Confidence 999999984 34566777777778765
No 7
>3mhs_A Ubiquitin carboxyl-terminal hydrolase 8; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_A 4fjc_A 4fk5_A 4fip_A 3m99_A
Probab=99.96 E-value=3.9e-30 Score=255.30 Aligned_cols=131 Identities=33% Similarity=0.615 Sum_probs=114.2
Q ss_pred CCCcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc-----cccc------------
Q psy2608 151 TEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS-----HRLT------------ 213 (321)
Q Consensus 151 ~~~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~-----~k~~------------ 213 (321)
....+|++||+.|+++|.|++.+ |+|++|+.++.|+|++.|.+||++|+||||||.+. .|+.
T Consensus 316 ~~~~sl~~~L~~~~~~E~l~~~~-~~C~~C~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~K~~~~V~fP~~Ldl~ 394 (476)
T 3mhs_A 316 KDKKKLYECLDSFHKKEQLKDFN-YHCGECNSTQDAIKQLGIHKLPSVLVLQLKRFEHLLNGSNRKLDDFIEFPTYLNMK 394 (476)
T ss_dssp TTCCBHHHHHHHHHCCEECSSCC-CEETTTTEECCCEEEEEEEEBCSEEEEEECCEEECTTSCEEECCCCCBCCSEEECG
T ss_pred hhhhHHHHHHHHhcChhhccCCC-CcCCccCCcccEEEEEEcccCCcceEEEeeeccccCCCCeEECCEEEcCCCeeech
Confidence 34579999999999999998644 99999999999999999999999999999999742 1320
Q ss_pred ----cC--------CCCCCceeEEeEEEEeeccCCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcC
Q psy2608 214 ----RG--------HDPFDLKYSLYAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKD 281 (321)
Q Consensus 214 ----~~--------~~~~~~~Y~L~aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~ 281 (321)
.. .......|+|+|||+|.|+.++|||+||+|..+++||.|||+.|+++++++|.+++||||||+|++
T Consensus 395 ~~~~~~~~~~~~~~~~~~~~~Y~L~avv~H~G~~~~GHY~a~vr~~~~~W~~fnD~~V~~v~~~~v~~~~aYiLfY~r~~ 474 (476)
T 3mhs_A 395 NYCSTKEKDKHSENGKVPDIIYELIGIVSHKGTVNEGHYIAFCKISGGQWFKFNDSMVSSISQEEVLKEQAYLLFYTIRQ 474 (476)
T ss_dssp GGBSCCBCCC--CCCBCCCEEEEEEEEEEEEECSSSEEEEEEEECTTSCEEEEETTEEEEECHHHHTTSCEEEEEEEEEE
T ss_pred hhcCcccccccccccCCCCCcEEEEEEEEeCCCCCCCceEEEEECCCCcEEEEeCCceEECCHHHhccCCcEEEEEEEec
Confidence 00 012346799999999999999999999999878999999999999999999999999999999987
Q ss_pred C
Q psy2608 282 L 282 (321)
Q Consensus 282 ~ 282 (321)
+
T Consensus 475 ~ 475 (476)
T 3mhs_A 475 V 475 (476)
T ss_dssp E
T ss_pred C
Confidence 4
No 8
>2ayn_A Ubiquitin carboxyl-terminal hydrolase 14; deubiquitinating enzymes, DUB, USP14, proteasome, enzyme mechanism; 3.20A {Homo sapiens} SCOP: d.3.1.9 PDB: 2ayo_A
Probab=99.95 E-value=1e-28 Score=239.31 Aligned_cols=126 Identities=22% Similarity=0.322 Sum_probs=104.4
Q ss_pred CcCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc------cccc----------c--
Q psy2608 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS------HRLT----------R-- 214 (321)
Q Consensus 153 ~~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~------~k~~----------~-- 214 (321)
..+|++||+.|+. |.+ .|+|++|++.+.|+|++.|.+||+||+||||||.+. .|+. .
T Consensus 193 ~~~l~~~L~~~~~-e~l----~~~c~~c~~~~~~~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~v~fP~~Ldl~~ 267 (404)
T 2ayn_A 193 VKYLFTGLKLRLQ-EEI----TKQSPTLQRNALYIKSSKISRLPAYLTIQMVRFFYKEKESVNAKVLKDVKFPLMLDMYE 267 (404)
T ss_dssp CCBHHHHHHHTTE-ECC----CCEETTTTEECCEEEEEEEEECCSSEEEEEECBCCCCSSSSCCBCCCCCBCCSEEECGG
T ss_pred cccHHHHHHHhcc-cce----eecchhhCCccceeeeeeHhhCCCceEEEEEEEEEecccCceeccCceeccCceeEHhH
Confidence 3589999999997 445 278999999999999999999999999999999753 2330 0
Q ss_pred --C--------------------------------------------------CCCCCceeEEeEEEEeec-cCCCceeE
Q psy2608 215 --G--------------------------------------------------HDPFDLKYSLYAIVCHSG-ILGGGHYV 241 (321)
Q Consensus 215 --~--------------------------------------------------~~~~~~~Y~L~aVv~H~G-~~~~GHY~ 241 (321)
. .......|+|+|||+|.| ++++|||+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Y~L~avv~H~G~s~~~GHY~ 347 (404)
T 2ayn_A 268 LCTPELQEKMVSFRSKFKDLEDKKVNQQPNTSDKKSSPQKEVKYEPFSFADDIGSNNCGYYDLQAVLTHQGRSSSSGHYV 347 (404)
T ss_dssp GBCHHHHHHTTTTTGGGTCTTC----------------------CCCCCSCTTTTCCCSEEEEEEEEEEESSSTTSSEEE
T ss_pred hcChhhhhhcchhhhHHhhhhcccchhhhhhccccccccccccccccccccccCcCCCceEEEEEEEEecCCCCCCCCeE
Confidence 0 012247899999999999 59999999
Q ss_pred EEEECCCCcEEEEcCCceeEeCCCcccCCC-------cEEEEEEEcCCC
Q psy2608 242 SYALNPNGKWYAYNDSSCRQVSSGEMDTSC-------AYMLFYERKDLD 283 (321)
Q Consensus 242 ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~-------AYiLfY~R~~~~ 283 (321)
||+|+.+++||+|||+.|+++++++|.... ||||||+|++..
T Consensus 348 a~v~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~~~ 396 (404)
T 2ayn_A 348 SWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAYVLLYGPRRVE 396 (404)
T ss_dssp EEEEEETTEEEEEBTTBCCCBCHHHHGGGGSSSSSCEEEEEEEECC---
T ss_pred EEEECCCCeEEEeecccceecCHHHHHhhhCCCCCceEEEEEEEecCCC
Confidence 999986899999999999999999987655 999999999853
No 9
>1vjv_A Ubiquitin carboxyl-terminal hydrolase 6; YFR010W, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE; 1.74A {Saccharomyces cerevisiae} SCOP: d.3.1.9
Probab=99.95 E-value=9.3e-28 Score=234.12 Aligned_cols=124 Identities=21% Similarity=0.320 Sum_probs=97.3
Q ss_pred cCHHHHHHhhccccccCCCCcccCCCCCcceeeEEEEEEeecCCeEEEEeeeeecc------cccc-----c-----C--
Q psy2608 154 INLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS------HRLT-----R-----G-- 215 (321)
Q Consensus 154 ~sL~~cL~~f~~~E~L~~~~~~~C~~C~~~~~a~k~~~i~~lP~vLiihLkRf~~~------~k~~-----~-----~-- 215 (321)
.+|++||+.|+.+ .+ .|+|++|+..+.|+|+..|.+||+||+||||||.+. .|+. + .
T Consensus 186 ~~l~~~L~~~~~e-~i----~~~c~~c~~~~~a~k~~~i~~lP~vL~i~LkRF~~~~~~~~~~Ki~~~V~FP~~Ldl~~~ 260 (415)
T 1vjv_A 186 NFMRNGLLEGLNE-KI----EKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADM 260 (415)
T ss_dssp CBHHHHHHHHHEE-C-------------CCCCEEEEEEEEECBSEEEEEECCEEEETTTTEEEECCCCCBCCSEEECGGG
T ss_pred chHHHHHHHHhhh-hh----hhcccccCCcccEEEEEEcccCCCeeEEEEEEEEEeCCCCcchhhcCccCCCcEeEhHHh
Confidence 4899999999974 34 378999999999999999999999999999999753 2320 0 0
Q ss_pred ------------------------------------------------------------------------------CC
Q psy2608 216 ------------------------------------------------------------------------------HD 217 (321)
Q Consensus 216 ------------------------------------------------------------------------------~~ 217 (321)
..
T Consensus 261 ~~~~~~~~~~~~r~~~~~~~~~~~e~~~~~k~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (415)
T 1vjv_A 261 LTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGE 340 (415)
T ss_dssp BCHHHHHHHHHHHHHHHHHHHHHHHC----------------CCCHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTCCTTB
T ss_pred cChhhhhhhhhhHHHHHHHhhhhhhhhhhhhhccccccccccccccchhhhhchhhHHhhhhhhhhhccccccccccccc
Confidence 00
Q ss_pred CCCceeEEeEEEEeec-cCCCceeEEEEEC-C-CCcEEEEcCCceeEeCCCcccCCC-------cEEEEEEEcCC
Q psy2608 218 PFDLKYSLYAIVCHSG-ILGGGHYVSYALN-P-NGKWYAYNDSSCRQVSSGEMDTSC-------AYMLFYERKDL 282 (321)
Q Consensus 218 ~~~~~Y~L~aVv~H~G-~~~~GHY~ay~k~-~-~~~W~~fnDs~V~~v~~~~v~~~~-------AYiLfY~R~~~ 282 (321)
.....|+|+|||+|.| ++++|||+||+|+ . +++||+|||+.|+++++++|.... ||||||+|+++
T Consensus 341 ~~~~~Y~L~aVv~H~G~s~~~GHY~a~vr~~~~~~~W~~fnD~~V~~v~~~~v~~~~~g~~~~~aYiLfY~r~~l 415 (415)
T 1vjv_A 341 NPSCVYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLAGGGESDSALILMYKGFGL 415 (415)
T ss_dssp CSSSEEEEEEEEEEESSSTTSSEEEEEEECSSCTTCEEEEETTEEEEECHHHHHGGGCCTTSCEEEEEEEEETTC
T ss_pred CCCceEEEEEEEEecCCCCCCCCEEEEEeCCCCCCcEEEeECCcCeEcCHHHHhhhcCCCCcceEEEEEEEecCC
Confidence 1237899999999999 6999999999998 3 899999999999999999987655 99999999874
No 10
>3ihp_A Ubiquitin carboxyl-terminal hydrolase 5; hydrolase, protease, thiol protease, UBL conjugation pathway, metal-binding, zinc-finger,structural genomics; 2.80A {Homo sapiens}
Probab=99.92 E-value=1.4e-25 Score=237.45 Aligned_cols=57 Identities=33% Similarity=0.651 Sum_probs=52.5
Q ss_pred eeEEeEEEEeec-cCCCceeEEEEECCCCcEEEEcCCceeEeCCCcccCCCcEEEEEEEcC
Q psy2608 222 KYSLYAIVCHSG-ILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERKD 281 (321)
Q Consensus 222 ~Y~L~aVv~H~G-~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v~~~~AYiLfY~R~~ 281 (321)
.|+|+|||+|.| +.++|||+||+|. +|+||+|||+.|+++ ++.....||||||+|.+
T Consensus 796 ~Y~L~avi~H~G~~~~~GHY~~~~~~-~~~W~~~nD~~V~~~--~~~~~~~aYilfY~R~~ 853 (854)
T 3ihp_A 796 KYQLFAFISHMGTSTMCGHYVCHIKK-EGRWVIYNDQKVCAS--EKPPKDLGYIYFYQRVA 853 (854)
T ss_dssp EEEEEEEEEEESSCSSCCEEEEEEEE-TTEEEEEETTEEEEC--SSCCTTSCSEEEEEECC
T ss_pred eEEEEEEEEeecCCCCCcCeEEEEEe-CCEEEEEECCeeEEc--cccCCCcceEEEEEecC
Confidence 699999999999 5889999999998 799999999999997 45678899999999975
No 11
>2vhf_A Ubiquitin carboxyl-terminal hydrolase CYLD; cytokine signalling, linkage specificity, deubiquitinating enzyme, Lys63- linked, anti-oncogene; 2.8A {Homo sapiens}
Probab=98.72 E-value=1.3e-08 Score=97.58 Aligned_cols=32 Identities=22% Similarity=0.716 Sum_probs=28.9
Q ss_pred ceeEEeEEEEeeccCCCceeEEEEECC--CCcEEEEcC
Q psy2608 221 LKYSLYAIVCHSGILGGGHYVSYALNP--NGKWYAYND 256 (321)
Q Consensus 221 ~~Y~L~aVv~H~G~~~~GHY~ay~k~~--~~~W~~fnD 256 (321)
..|+|+|||+ .++|||+||||.. +++|+.||-
T Consensus 275 g~yeL~aVlt----adsgHYvafVK~~~~d~~W~~FDs 308 (374)
T 2vhf_A 275 QNMELFAVLC----IETSHYVAFVKYGKDDSAWLFFDS 308 (374)
T ss_dssp CCEEEEEEEE----EETTEEEEEEECSSSTTCEEEEET
T ss_pred eeEEEEEEEE----ccCCceEEEEEecCCCCCeEEEec
Confidence 5799999999 7899999999974 799999984
No 12
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=59.34 E-value=19 Score=27.14 Aligned_cols=46 Identities=22% Similarity=0.246 Sum_probs=33.1
Q ss_pred ccceEEecCCCCCHHHHHHHHHHHHhhhcCCCCCCCCCCCCCCCCCCCCCCcccceEEEEeCCCCCccc
Q psy2608 20 GIPVIVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPNHAMDCDDSLGYEYPFVLKAITPDGMQCS 88 (321)
Q Consensus 20 G~Pl~~~~~~~~t~~~Ly~~v~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~pf~l~~v~~~g~~c~ 88 (321)
|-=+++++|..++.++|++.|-. .++-. ...||+++-+|.+|..|.
T Consensus 15 gdi~~~~v~~~i~~~~L~~kv~~----~~~~~-------------------~~~~f~lky~DEeGD~it 60 (89)
T 1vd2_A 15 GDIMITHFEPSISFEGLCNEVRD----MCSFD-------------------NEQLFTMKWIDEEGDPCT 60 (89)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHH----HTTCC-------------------SSCCEEEEECCSSSCCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHH----HhCCC-------------------CCCeEEEEEECCCCCccc
Confidence 34446788999999999998444 44311 125799999999988876
No 13
>3mp2_A Non-structural protein 3; papain-like protease, TGEV, hydrolase; 2.50A {Porcine transmissible gastroenteritiscoronavirus}
Probab=56.98 E-value=11 Score=33.04 Aligned_cols=35 Identities=17% Similarity=0.400 Sum_probs=27.9
Q ss_pred EEEEeeccCCCceeEEEEECCCCcEEEEcCCceeEeCC
Q psy2608 227 AIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSS 264 (321)
Q Consensus 227 aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~ 264 (321)
+-++-.|+.++|||+.+... .+ +.+|...+.+++.
T Consensus 162 ~~~vF~G~~~~GHY~~~~~~-~~--~~vDG~~~~~~~~ 196 (211)
T 3mp2_A 162 MHAVYTGTTQNGHYMVDDIE-HG--YCVDGMGIKPLKK 196 (211)
T ss_dssp EEEEEESCTTTCEEEEEETT-TT--EEEETTEEECCCC
T ss_pred eEEEEEcCCCCceEEEEecc-cc--eEEeCCceeEccc
Confidence 44555999999999999754 33 9999999998873
No 14
>2q37_A OHCU decarboxylase; 2-OXO-4-hydroxy-4-carboxy-5-ureidoimidazoline, plant protein, lyase; HET: 3AL; 2.50A {Arabidopsis thaliana} SCOP: a.288.1.1
Probab=51.41 E-value=5.8 Score=33.96 Aligned_cols=26 Identities=23% Similarity=0.308 Sum_probs=21.4
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHH
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQV 44 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~ 44 (321)
-||.||||.+. +.+.+++-..+..|+
T Consensus 126 kFGfpFVi~v~-G~s~~~IL~~l~~RL 151 (181)
T 2q37_A 126 KFGFIFIICAS-GRTHAEMLHALKERY 151 (181)
T ss_dssp HHSSCCCCCCS-SCCHHHHHHHHHHHT
T ss_pred HcCCeEEEEeC-CCCHHHHHHHHHHHH
Confidence 49999999885 678888888877765
No 15
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=50.67 E-value=12 Score=37.20 Aligned_cols=38 Identities=16% Similarity=0.183 Sum_probs=28.8
Q ss_pred ceeeecccCCCceecccceEEecCCCCCHHHHHHHHHHHH
Q psy2608 5 TAYFLSAHKYRPILFGIPVIVPCSDTTTQQDLYQAVWLQV 44 (321)
Q Consensus 5 ~~y~~s~~~~~~~lfG~Pl~~~~~~~~t~~~Ly~~v~~~~ 44 (321)
++|+.. +....+||.||++.+.++-|..++++.|..++
T Consensus 437 ~V~hf~--k~~~~~~G~PF~~~v~~gEt~~~~k~Rl~~rl 474 (530)
T 2ylm_A 437 TVAHFH--KEVFGTFGIPFLLRIHQGEHFREVMKRIQSLL 474 (530)
T ss_dssp EEEEES--SSTTCEEEEEEEEEEETTCCHHHHHHHHHHHH
T ss_pred EEEEec--cCcccccCCCeEEEecCCCcHHHHHHHHHHHh
Confidence 444443 22334799999999999999999999877665
No 16
>2o8i_A AGR_C_4230P, hypothetical protein ATU2327; agrobacterium tumefaciens STR. C58, structural GENO PSI-2, protein structure initiative; 2.60A {Agrobacterium tumefaciens str} SCOP: a.288.1.1
Probab=50.04 E-value=7.7 Score=32.59 Aligned_cols=27 Identities=22% Similarity=0.452 Sum_probs=22.0
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHHh
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQVA 45 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~~ 45 (321)
-||.||||.+. +.+.+++-..+..|+.
T Consensus 110 kFGfpFvi~v~-g~~~~~Il~~l~~Rl~ 136 (165)
T 2o8i_A 110 KFGFPFIIAVK-GLNRHDILSAFDTRID 136 (165)
T ss_dssp HHSSCCCCCCT-TCCHHHHHHHHHHHHT
T ss_pred HcCCeeEeeeC-CCCHHHHHHHHHHHHC
Confidence 49999999884 6778888888877764
No 17
>2fe8_A PP1AB, ORF1AB, replicase polyprotein 1AB; protease, hydrolase; 1.85A {Sars coronavirus} PDB: 3e9s_A* 3mj5_A*
Probab=44.21 E-value=23 Score=32.89 Aligned_cols=37 Identities=16% Similarity=0.231 Sum_probs=28.1
Q ss_pred eEEEEeeccCCCceeEEEEECCCCcEEEEcCCceeEeCC
Q psy2608 226 YAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSS 264 (321)
Q Consensus 226 ~aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~ 264 (321)
++.++-.|+.++|||+.+.-. ++. +.||...+.+++.
T Consensus 260 ~~a~vF~G~~~~GHYt~~~~~-~~~-~~~Dg~~~~~~~~ 296 (315)
T 2fe8_A 260 LCANEYTGNYQCGHYTHITAK-ETL-YRIDGAHLTKMSE 296 (315)
T ss_dssp SEEEEEESCGGGCEEEEEEES-SSE-EEEETTEEEEESE
T ss_pred EEEEEEECCCCccceEEEecC-Cce-eEEeCCcceeccc
Confidence 344445899899999988753 233 8999999999875
No 18
>2o70_A OHCU decarboxylase; URIC acid, decarboxylation, 5-hydroxyisourate, allantoin, lyase; 1.80A {Danio rerio} SCOP: a.288.1.1 PDB: 2o73_A* 2o74_A*
Probab=44.21 E-value=7.4 Score=32.97 Aligned_cols=26 Identities=15% Similarity=0.401 Sum_probs=21.1
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHH
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQV 44 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~ 44 (321)
-||.||||.+. +.+.+++-..+..|+
T Consensus 114 kFGfpFvi~v~-g~s~~~IL~~l~~Rl 139 (174)
T 2o70_A 114 RFGFPFVICAR-LNNKADIVRQLSERL 139 (174)
T ss_dssp HHSSCCCCCGG-GCCHHHHHHHHHHHT
T ss_pred HCCCeEEEeeC-CCCHHHHHHHHHHHH
Confidence 49999999884 677888888877765
No 19
>3o7i_A OHCU decarboxylase; lyase; 1.50A {Klebsiella pneumoniae subsp} PDB: 3o7h_A 3o7j_A* 3o7k_A
Probab=41.60 E-value=10 Score=32.65 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=22.1
Q ss_pred ecccceEEecCCCCCHHHHHHHHHHHHh
Q psy2608 18 LFGIPVIVPCSDTTTQQDLYQAVWLQVA 45 (321)
Q Consensus 18 lfG~Pl~~~~~~~~t~~~Ly~~v~~~~~ 45 (321)
-||.||||.+. +.+.+++-..++.|+.
T Consensus 135 kFGfpFVi~v~-G~s~~~IL~~l~~Rl~ 161 (189)
T 3o7i_A 135 RFGRVFLIRAK-GRSGEEILQALTRRLQ 161 (189)
T ss_dssp HHSSCCCCCCT-TCCHHHHHHHHHHHTT
T ss_pred HCCCceEEecC-CCCHHHHHHHHHHHHC
Confidence 49999999874 6699999988877764
No 20
>4ekf_A Adenain; alpha and beta protein (A+B), hydrolase; HET: CSD; 0.98A {Human adenovirus 2} PDB: 1nln_A 1avp_A
Probab=30.65 E-value=39 Score=29.06 Aligned_cols=31 Identities=35% Similarity=0.677 Sum_probs=23.2
Q ss_pred eEEEEeecc-CCCceeEEEEECC-CCcEEEEcC
Q psy2608 226 YAIVCHSGI-LGGGHYVSYALNP-NGKWYAYND 256 (321)
Q Consensus 226 ~aVv~H~G~-~~~GHY~ay~k~~-~~~W~~fnD 256 (321)
.||||--|. .+|=|+.|++.++ ..+.|.||-
T Consensus 40 ~AIVNTg~retGGvHWiA~Aw~P~s~~~YmFDP 72 (204)
T 4ekf_A 40 CAIVNTAGRETGGVHWMAFAWNPRSKTCYLFEP 72 (204)
T ss_dssp EEEEESCC----CCCEEEEEEETTTTEEEEECT
T ss_pred eeEEecCCcccCceeEEEeEecCCcceEEEeCC
Confidence 677776654 6777999999999 788999984
No 21
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=27.38 E-value=54 Score=24.45 Aligned_cols=23 Identities=13% Similarity=0.124 Sum_probs=20.0
Q ss_pred eEEecCCCCCHHHHHHHHHHHHh
Q psy2608 23 VIVPCSDTTTQQDLYQAVWLQVA 45 (321)
Q Consensus 23 l~~~~~~~~t~~~Ly~~v~~~~~ 45 (321)
+++++|.+++.++|+..|..|+.
T Consensus 24 iAIrvP~di~~~~L~dKi~~RLk 46 (85)
T 1ip9_A 24 FALMLKGDTTYKELRSKIAPRID 46 (85)
T ss_dssp EEEEECSCCCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhc
Confidence 36799999999999999888874
No 22
>2cr8_A MDM4 protein; ZF-ranbp domain, P53-binding protein MDM4, MDM2-like P53-binding DE protein, MDMX protein, double minute 4 protein; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=24.60 E-value=31 Score=23.27 Aligned_cols=15 Identities=27% Similarity=0.937 Sum_probs=11.7
Q ss_pred CCCCcccCCCCCcce
Q psy2608 170 GENEKYYCPKCKTHQ 184 (321)
Q Consensus 170 ~~~~~~~C~~C~~~~ 184 (321)
+.+|.|.|..|++..
T Consensus 7 ~~eD~WkC~~C~k~N 21 (53)
T 2cr8_A 7 GSEDEWQCTECKKFN 21 (53)
T ss_dssp CCSCCEECSSSCCEE
T ss_pred CCcceeecccccccC
Confidence 347889999999743
No 23
>3o65_A Putative ataxin-3-like protein; papain-like fold, hydrolase-protein complex; 2.70A {Homo sapiens} PDB: 2aga_A 1yzb_A 2jri_A 2dos_A
Probab=24.32 E-value=93 Score=26.65 Aligned_cols=53 Identities=17% Similarity=0.305 Sum_probs=37.9
Q ss_pred EeEEEEeeccCCCceeEEEEECCCCcEEEEcCCceeEeCCCcc--------cCCCcEEEEEEEcCC
Q psy2608 225 LYAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEM--------DTSCAYMLFYERKDL 282 (321)
Q Consensus 225 L~aVv~H~G~~~~GHY~ay~k~~~~~W~~fnDs~V~~v~~~~v--------~~~~AYiLfY~R~~~ 282 (321)
..|.|++. .-|++|..|- +|.||.+|-..-.|.--.+. .....|-+|=.+-++
T Consensus 110 ~~~FI~N~----~~HWfaiRki-gg~WyNLdS~l~~P~~i~~~yL~~fL~ql~~eg~siFvV~g~l 170 (191)
T 3o65_A 110 ERSFICNY----KQHWFTIRKF-GKHWFNLNSLLAGPELISDTCLANFLARLQQQAYSVFVVKGDL 170 (191)
T ss_dssp CCEEEEEE----SSCEEEEEEE-TTEEEECCTTSSSCEEECHHHHHHHHGGGGSTTEEEEEEESCC
T ss_pred hhhhhhcc----ccceeeEEec-CCEEEEccCCCCCCCCcChHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 45778776 4899999887 89999999765444322221 247899999998643
Done!