RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2608
(321 letters)
>gnl|CDD|239139 cd02674, Peptidase_C19R, A subfamily of peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 230
Score = 126 bits (319), Expect = 6e-35
Identities = 60/159 (37%), Positives = 77/159 (48%), Gaps = 26/159 (16%)
Query: 144 IASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV-- 201
I S + L CL FTKEE L + + CPKCK + A+KKL I RLP VLI+
Sbjct: 74 IPSGSGDAPKVTLEDCLRLFTKEETLDGDNAWKCPKCKKKRKATKKLTISRLPKVLIIHL 133
Query: 202 --------------------LRNTTVQSHRLTRG-HDPFDLKYSLYAIVCHSGILGGGHY 240
L + + + TR PF KY LYA+V H G L GGHY
Sbjct: 134 KRFSFSRGSTRKLTTPVTFPLNDLDLTPYVDTRSFTGPF--KYDLYAVVNHYGSLNGGHY 191
Query: 241 VSYALNPN-GKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278
+Y N WY ++DS +VS + +S AY+LFYE
Sbjct: 192 TAYCKNNETNDWYKFDDSRVTKVSESSVVSSSAYILFYE 230
>gnl|CDD|227847 COG5560, UBP12, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 823
Score = 114 bits (288), Expect = 3e-28
Identities = 61/171 (35%), Positives = 84/171 (49%), Gaps = 22/171 (12%)
Query: 132 SLEKVFEEHETCIASKREQTEP-INLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKL 190
+F + E I L CL F+K E LG ++ +YCP CK + ASK++
Sbjct: 652 RYLSLFSYDPLWTIREIGAAERTITLQDCLNEFSKPEQLGLSDSWYCPGCKEFRQASKQM 711
Query: 191 EIYRLPPVLIVL--RNTTVQSHRLTRGH------DPFDLK------------YSLYAIVC 230
E++RLP +LI+ R ++V+S R D DL Y LYA+
Sbjct: 712 ELWRLPMILIIHLKRFSSVRSFRDKIDDLVEYPIDDLDLSGVEYMVDDPRLIYDLYAVDN 771
Query: 231 HSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYERK 280
H G L GGHY +YA N N WY ++DS +V + TS AY+LFY RK
Sbjct: 772 HYGGLSGGHYTAYARNFANNGWYLFDDSRITEVDPEDSVTSSAYVLFYRRK 822
>gnl|CDD|239126 cd02661, Peptidase_C19E, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 304
Score = 103 bits (259), Expect = 1e-25
Identities = 53/142 (37%), Positives = 70/142 (49%), Gaps = 20/142 (14%)
Query: 155 NLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVL-IVL-RNTTVQSHRL 212
+L LE FTK E L KY C +CK ASK+L I+R P VL I L R + + ++
Sbjct: 163 SLEDALEQFTKPEQLDGENKYKCERCKKKVKASKQLTIHRAPNVLTIHLKRFSNFRGGKI 222
Query: 213 TR----------------GHDPFDLKYSLYAIVCHSGILG-GGHYVSYALNPNGKWYAYN 255
+ +D LKY LYA++ HSG GHY Y + NGKWY +
Sbjct: 223 NKQISFPETLDLSPYMSQPNDG-PLKYKLYAVLVHSGFSPHSGHYYCYVKSSNGKWYNMD 281
Query: 256 DSSCRQVSSGEMDTSCAYMLFY 277
DS VS + + AY+LFY
Sbjct: 282 DSKVSPVSIETVLSQKAYILFY 303
>gnl|CDD|215922 pfam00443, UCH, Ubiquitin carboxyl-terminal hydrolase.
Length = 313
Score = 100 bits (252), Expect = 1e-24
Identities = 53/146 (36%), Positives = 68/146 (46%), Gaps = 27/146 (18%)
Query: 158 YCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV---------------L 202
+F K E L + EKYYCPKC Q A KKL+I RLPPVLI+ +
Sbjct: 169 LLTGNFLKLEELEKEEKYYCPKCGGKQNAIKKLDISRLPPVLIIHLKRFEDFNRETEKKI 228
Query: 203 RNTTVQSHRL---------TRGHDPFDLKYSLYAIVCHSGI-LGGGHYVSYALNP-NGKW 251
+ L G +P KY L A+V HSG L GGHY++Y KW
Sbjct: 229 SDRVEFPLELDLSSYLEEELEGEEP-PTKYELVAVVVHSGSSLSGGHYIAYIKKREKNKW 287
Query: 252 YAYNDSSCRQVSSGEMDTSCAYMLFY 277
++D V+ E+ S AY+LFY
Sbjct: 288 VKFDDEKVSVVTEEEVLRSSAYILFY 313
>gnl|CDD|239072 cd02257, Peptidase_C19, Peptidase C19 contains ubiquitinyl
hydrolases. They are intracellular peptidases that
remove ubiquitin molecules from polyubiquinated peptides
by cleavage of isopeptide bonds. They hydrolyse bonds
involving the carboxyl group of the C-terminal Gly
residue of ubiquitin The purpose of the
de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 255
Score = 96.8 bits (241), Expect = 1e-23
Identities = 55/163 (33%), Positives = 74/163 (45%), Gaps = 34/163 (20%)
Query: 149 EQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV------- 201
+ ++L CLE F KEE L + Y C K K Q A+K+L+I +LPPVLI+
Sbjct: 94 KGLPQVSLEDCLEKFFKEEILEGDNCYKCEKKK-KQEATKRLKIKKLPPVLIIHLKRFSF 152
Query: 202 -------------------LRNTTVQSHRLTRGHDPFDLKYSLYAIVCHSG-ILGGGHYV 241
+ + D KY L A+V HSG GHYV
Sbjct: 153 NEDGTKEKLNTKVSFPLELDLSPYLSEGEKDSDSDNGSYKYELVAVVVHSGTSADSGHYV 212
Query: 242 SYALNP-NGKWYAYNDSSCRQVSSGE-----MDTSCAYMLFYE 278
+Y +P +GKWY +ND +VS E +S AY+LFYE
Sbjct: 213 AYVKDPSDGKWYKFNDDKVTEVSEEEVLEFGSLSSSAYILFYE 255
>gnl|CDD|227820 COG5533, UBP5, Ubiquitin C-terminal hydrolase [Posttranslational
modification, protein turnover, chaperones].
Length = 415
Score = 97.4 bits (242), Expect = 9e-23
Identities = 47/163 (28%), Positives = 71/163 (43%), Gaps = 26/163 (15%)
Query: 142 TCIASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV 201
+ + + + L C++ F +EE L + + CPKC + + K++EI LP VLI+
Sbjct: 252 STLLVPPYEVVQLGLQECIDRFYEEEKLEGKDAWRCPKCGRKESSRKRMEILVLPDVLII 311
Query: 202 ------------LRNTTVQSHRLTRGH---DPFDL---------KYSLYAIVCHSGILGG 237
+ T Q + T KYSL +VCH+G L G
Sbjct: 312 HISRFHISVMGRKKIDTPQGWKNTASVEVNVTLLFNNGIGYIPRKYSLLGVVCHNGTLNG 371
Query: 238 GHYVSYALNPNGKWYAYNDSSCRQVS-SGEMDTSCAYMLFYER 279
GHY S +G W Y+DS R+ S + +Y+LFY R
Sbjct: 372 GHYFSEVKR-SGTWNVYDDSQVRKGSRTTSGSHPSSYILFYTR 413
>gnl|CDD|239125 cd02660, Peptidase_C19D, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 328
Score = 92.4 bits (230), Expect = 2e-21
Identities = 49/158 (31%), Positives = 72/158 (45%), Gaps = 30/158 (18%)
Query: 149 EQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVL-IVLR---- 203
+ L+ CL+ FT+ E LG+ Y C C + Q A+K+L I +LPPVL L+
Sbjct: 171 GVSGTPTLSDCLDRFTRPEKLGDFA-YKCSGCGSTQEATKQLSIKKLPPVLCFQLKRFEH 229
Query: 204 ---------NTTVQ---------------SHRLTRGHDPFDLKYSLYAIVCHSGILGGGH 239
+T VQ D Y L+A+V H G L GH
Sbjct: 230 SLNKTSRKIDTYVQFPLELNMTPYTSSSIGDTQDSNSLDPDYTYDLFAVVVHKGTLDTGH 289
Query: 240 YVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFY 277
Y +Y +G+W+ ++D+ +VS E+ S AY+LFY
Sbjct: 290 YTAYCRQGDGQWFKFDDAMITRVSEEEVLKSQAYLLFY 327
>gnl|CDD|239132 cd02667, Peptidase_C19K, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 279
Score = 83.6 bits (207), Expect = 2e-18
Identities = 51/180 (28%), Positives = 71/180 (39%), Gaps = 50/180 (27%)
Query: 146 SKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV--LR 203
E ++ CL+ FT+ E L N K+ C C A K+ I +LPPVL++ R
Sbjct: 103 RSDEIKSECSIESCLKQFTEVEILEGNNKFACENCTK---AKKQYLISKLPPVLVIHLKR 159
Query: 204 NTTVQSHRL-----------------------TRGHDPFDLKYSLYAIVCHSGILGGGHY 240
+S L D + Y LY +V HSG + GHY
Sbjct: 160 FQQPRSANLRKVSRHVSFPEILDLAPFCDPKCNSSEDKSSVLYRLYGVVEHSGTMRSGHY 219
Query: 241 VSYAL----------------------NPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278
V+Y +G+WY +DS R+VS E+ S AY+LFYE
Sbjct: 220 VAYVKVRPPQQRLSDLTKSKPAADEAGPGSGQWYYISDSDVREVSLEEVLKSEAYLLFYE 279
>gnl|CDD|239124 cd02659, peptidase_C19C, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 334
Score = 80.0 bits (198), Expect = 5e-17
Identities = 48/182 (26%), Positives = 67/182 (36%), Gaps = 55/182 (30%)
Query: 155 NLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV------------- 201
NL L+++ + E L + KY+C KC A K + +LPPVL +
Sbjct: 152 NLEESLDAYVQGETLEGDNKYFCEKCGKKVDAEKGVCFKKLPPVLTLQLKRFEFDFETMM 211
Query: 202 ---------------LRNTTVQS----HRLTRGHDPFDLKYSLYAIVCHSGILGGGHYVS 242
+ T + + D Y L+ ++ HSG GGHY S
Sbjct: 212 RIKINDRFEFPLELDMEPYTEKGLAKKEGDSEKKDSESYIYELHGVLVHSGDAHGGHYYS 271
Query: 243 YAL-NPNGKWYAYND---SSCR--QVSS----GEMD-------------TSCAYMLFYER 279
Y +GKWY +ND + GE T+ AYMLFYER
Sbjct: 272 YIKDRDDGKWYKFNDDVVTPFDPNDAEEECFGGEETQKTYDSGPRAFKRTTNAYMLFYER 331
Query: 280 KD 281
K
Sbjct: 332 KS 333
>gnl|CDD|239128 cd02663, Peptidase_C19G, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 300
Score = 71.2 bits (175), Expect = 5e-14
Identities = 41/158 (25%), Positives = 69/158 (43%), Gaps = 37/158 (23%)
Query: 154 INLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVL-----------IVL 202
++ CL F+ E L K+YC +C + Q A K+++I +LP +L +
Sbjct: 147 TSITSCLRQFSATETLCGRNKFYCDECCSLQEAEKRMKIKKLPKILALHLKRFKYDEQLN 206
Query: 203 RNTTVQSHRL----------TRGHDPF-DLKYSLYAIVCHSGILGG---GHYVSYALNPN 248
R + +R+ T D Y L A+V H G GG GHYVS + +
Sbjct: 207 RYIKL-FYRVVFPLELRLFNTTDDAENPDRLYELVAVVVHIG--GGPNHGHYVS-IVKSH 262
Query: 249 GKWYAYNDSSCRQVSSGEMD--------TSCAYMLFYE 278
G W ++D + ++ ++ + AY+LFY+
Sbjct: 263 GGWLLFDDETVEKIDENAVEEFFGDSPNQATAYVLFYQ 300
>gnl|CDD|239133 cd02668, Peptidase_C19L, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 324
Score = 64.4 bits (157), Expect = 1e-11
Identities = 39/168 (23%), Positives = 66/168 (39%), Gaps = 44/168 (26%)
Query: 155 NLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV--LR--------- 203
L C++ F KEE L + +Y+C C + A++++ + LPP L LR
Sbjct: 157 TLEECIDEFLKEEQLTGDNQYFCESCNSKTDATRRIRLTTLPPTLNFQLLRFVFDRKTGA 216
Query: 204 ----NTTVQ-SHRLTRG-----HDPFDLKYSLYAIVCHSGILG-GGHYVSYALNP-NGKW 251
N ++ L G D Y L ++ H G+ GHY+++ + G+W
Sbjct: 217 KKKLNASISFPEILDMGEYLAESDEGSYVYELSGVLIHQGVSAYSGHYIAHIKDEQTGEW 276
Query: 252 YAYND--------------------SSCR-QVSSGEMDTSCAYMLFYE 278
Y +ND + ++ G + AYML Y+
Sbjct: 277 YKFNDEDVEEMPGKPLKLGNSEDPAKPRKSEIKKGTHSSRTAYMLVYK 324
>gnl|CDD|239123 cd02658, Peptidase_C19B, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 311
Score = 59.3 bits (144), Expect = 5e-10
Identities = 35/144 (24%), Positives = 55/144 (38%), Gaps = 25/144 (17%)
Query: 152 EPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSHR 211
EP+ L CL+++ E E +C CK A+K P L++ ++ +
Sbjct: 176 EPVPLEDCLKAYFAPE---TIE-DFCSTCKEKTTATKTTGFKTFPDYLVI----NMKRFQ 227
Query: 212 LTRGHDPFDL-------------KYSLYAIVCHSGI-LGGGHYVSY---ALNPNGKWYAY 254
L P L KY L A + H G + GHYV++ ++ GKW +
Sbjct: 228 LLENWVPKKLDVPIDVPEELGPGKYELIAFISHKGTSVHSGHYVAHIKKEIDGEGKWVLF 287
Query: 255 NDSSCRQVSSGEMDTSCAYMLFYE 278
ND Y+ FY+
Sbjct: 288 NDEKVVASQDPPEMKKLGYIYFYQ 311
>gnl|CDD|239127 cd02662, Peptidase_C19F, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 240
Score = 53.1 bits (128), Expect = 3e-08
Identities = 41/157 (26%), Positives = 62/157 (39%), Gaps = 54/157 (34%)
Query: 159 CLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV--------LRNTTVQSH 210
CL+ F E + + Y C +C+T I RLP +L + R T+ ++
Sbjct: 101 CLDDFLSTEII---DDYKCDRCQT--------VIVRLPQILCIHLSRSVFDGRGTSTKNS 149
Query: 211 -------RLTRGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP---------------- 247
RL + + Y L A+V H G GHYV Y P
Sbjct: 150 CKVSFPERLPK------VLYRLRAVVVHYGSHSSGHYVCYRRKPLFSKDKEPGSFVRMRE 203
Query: 248 -----NGKWYAYNDSSCRQVSSGEMDTSC-AYMLFYE 278
+ W+ +D++ ++VS E+ AYMLFYE
Sbjct: 204 GPSSTSHPWWRISDTTVKEVSESEVLEQKSAYMLFYE 240
>gnl|CDD|222118 pfam13423, UCH_1, Ubiquitin carboxyl-terminal hydrolase.
Length = 296
Score = 50.1 bits (120), Expect = 4e-07
Identities = 31/137 (22%), Positives = 50/137 (36%), Gaps = 34/137 (24%)
Query: 153 PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVL-IVLRNTTVQSHR 211
+ LE E + + C C+ + LA+ + + LPP+L I L+ V +
Sbjct: 162 GRTFSNILERSLNRE---KINRITCNSCRKYSLANSRKHVKSLPPILGICLKRYNVTPNG 218
Query: 212 LTRGHDPF--------------------------DLKYSLYAIVCHSGI-LGGGHYVSY- 243
+ F + KY L +VCH G GH VS+
Sbjct: 219 NWSRLNTFVDIPLEIRLPHFIQDDEMVNEGPLSGNFKYELQGVVCHIGDSTHSGHLVSFI 278
Query: 244 --ALNPNGKWYAYNDSS 258
A + + +WY +ND
Sbjct: 279 RVAPSEDDQWYLFNDFL 295
>gnl|CDD|239130 cd02665, Peptidase_C19I, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 228
Score = 47.9 bits (114), Expect = 1e-06
Identities = 36/140 (25%), Positives = 52/140 (37%), Gaps = 23/140 (16%)
Query: 155 NLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV-LRNTTVQSHRLT 213
NL CLE+ E + + K + ++ LPPVL L R
Sbjct: 94 NLHECLEAAMFEGEVELLPSDHSVKSGQERWFTE------LPPVLTFELSRFEFNQGRPE 147
Query: 214 RGHDPFDL-------KYSLYAIVCHSGILGGGHYVSYALN-PNGKWYAYNDSSCRQVSSG 265
+ HD + Y L+A++ H G GHY +Y +W YND S + S
Sbjct: 148 KIHDKLEFPQIIQQVPYELHAVLVHEGQANAGHYWAYIYKQSRQEWEKYNDISVTESSWE 207
Query: 266 EMD--------TSCAYMLFY 277
E++ AY L Y
Sbjct: 208 EVERDSFGGGRNPSAYCLMY 227
>gnl|CDD|239122 cd02657, Peptidase_C19A, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyse bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 305
Score = 45.4 bits (108), Expect = 2e-05
Identities = 37/139 (26%), Positives = 58/139 (41%), Gaps = 26/139 (18%)
Query: 166 EEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVL-------RNTTVQSHRLTRGHDP 218
++ L E + + P + +K I RLP L V R+ ++ L + P
Sbjct: 167 KKGLEEEIEKHSPTLGRDAIYTKTSRISRLPKYLTVQFVRFFWKRDIQKKAKILRKVKFP 226
Query: 219 FDL----------KYSLYAIVCHSGILG-GGHYVSYALNPN-GKWYAYNDSSCRQVS--- 263
F+L Y L A++ H G GHYV++ N GKW ++D +V+
Sbjct: 227 FELDLYELCTPSGYYELVAVITHQGRSADSGHYVAWVRRKNDGKWIKFDDDKVSEVTEED 286
Query: 264 ----SGEMDTSCAYMLFYE 278
SG D AY+L Y+
Sbjct: 287 ILKLSGGGDWHIAYILLYK 305
>gnl|CDD|239129 cd02664, Peptidase_C19H, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 327
Score = 45.2 bits (107), Expect = 2e-05
Identities = 50/234 (21%), Positives = 76/234 (32%), Gaps = 83/234 (35%)
Query: 128 RYQSSLEKVFEEH-ETCI-------ASKREQTEP-INLAYC-----LESFTKEEHLGENE 173
R + +EK+F T I S R + ++L++ L F E L +
Sbjct: 94 RLHTLIEKMFGGKLSTTIRCLNCNSTSARTERFRDLDLSFPSVQDLLNYFLSPEKLTGDN 153
Query: 174 KYYCPKCKTHQLASKKLEIYRLPPVLI---------------------VLRNTTVQ---- 208
+YYC KC + Q A K++++ P LI V N +
Sbjct: 154 QYYCEKCASLQDAEKEMKVTGAPEYLILTLLRFSYDQKTHVREKIMDNVSINEVLSLPVR 213
Query: 209 -SHRLTRGHDPFDLK--------------YSLYAIVCHSGI-LGGGHYVSYALNP----- 247
+ + + Y LYA+V HSG GHY +YA +
Sbjct: 214 VESKSSESPLEKKEEESGDDGELVTRQVHYRLYAVVVHSGYSSESGHYFTYARDQTDADS 273
Query: 248 ----------------NGKWYAYNDSSCRQVSSGEMDTSC-------AYMLFYE 278
+ WY +NDS S + Y+LFYE
Sbjct: 274 TGQECPEPKDAEENDESKNWYLFNDSRVTFSSFESVQNVTSRFPKDTPYILFYE 327
>gnl|CDD|239138 cd02673, Peptidase_C19Q, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 245
Score = 44.4 bits (105), Expect = 3e-05
Identities = 34/121 (28%), Positives = 48/121 (39%), Gaps = 23/121 (19%)
Query: 177 CPKCKTHQLASKKLEIYRLPPVLIV------LRNTTV-------QSHRLTRGHDPFDLKY 223
C CK + A I P L + LR T + + G D KY
Sbjct: 129 CSSCK-CESAISSERIMTFPECLSINLKRYKLRIATSDYLKKNEEIMKKYCGTDA---KY 184
Query: 224 SLYAIVCHSG-ILGGGHYVSYA--LNPNGKWYAYNDSSCRQVSSGEMD---TSCAYMLFY 277
SL A++CH G GHY++Y L W +D R VS ++ S Y++FY
Sbjct: 185 SLVAVICHLGESPYDGHYIAYTKELYNGSSWLYCSDDEIRPVSKNDVSTNARSSGYLIFY 244
Query: 278 E 278
+
Sbjct: 245 D 245
>gnl|CDD|239136 cd02671, Peptidase_C19O, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 332
Score = 44.5 bits (105), Expect = 4e-05
Identities = 36/165 (21%), Positives = 60/165 (36%), Gaps = 38/165 (23%)
Query: 146 SKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV-LRN 204
S +TE L + + F E + +KY+C C + A + L +LP V+ + L+
Sbjct: 172 SPDPKTEMKTLKWAISQFASVERIVGEDKYFCENCHHYTEAERSLLFDKLPEVITIHLKC 231
Query: 205 TTVQSHRLTRGHD----------PFDLK------------YSLYAIVCHSGI-LGGGHYV 241
P L Y L+A+V HSG + GHY
Sbjct: 232 FAANGSEFDCYGGLSKVNTPLLTPLKLSLEEWSTKPKNDVYRLFAVVMHSGATISSGHYT 291
Query: 242 SYALNPNGKWYAYNDSSCRQVSSGEMDTSCA---------YMLFY 277
+Y +W ++DS + + + + Y+LFY
Sbjct: 292 AYV-----RWLLFDDSEVKVTEEKDFLEALSPNTSSTSTPYLLFY 331
>gnl|CDD|227409 COG5077, COG5077, Ubiquitin carboxyl-terminal hydrolase
[Posttranslational modification, protein turnover,
chaperones].
Length = 1089
Score = 44.5 bits (105), Expect = 6e-05
Identities = 43/178 (24%), Positives = 63/178 (35%), Gaps = 55/178 (30%)
Query: 155 NLAYCLESFTKEEHLGENEKYYCPKCKTHQL--ASKKLEIYRLPPVLIVL---------R 203
NL + + E L + +Y + H L A K + LPPVL + R
Sbjct: 339 NLQESFRRYIQVETLDGDNRYNA---EKHGLQDAKKGVIFESLPPVLHLQLKRFEYDFER 395
Query: 204 NTTVQSHRLTRGHDPFDLK----------------YSLYAIVCHSGILGGGHYVSYALNP 247
+ V+ + DL Y LY ++ HSG L GHY + L P
Sbjct: 396 DMMVKINDRYEFPLEIDLLPFLDRDADKSENSDAVYVLYGVLVHSGDLHEGHYYAL-LKP 454
Query: 248 --NGKWYAYNDSSCRQVS----------------------SGEMDTSCAYMLFYERKD 281
+G+WY ++D+ + + SG AYML Y RK
Sbjct: 455 EKDGRWYKFDDTRVTRATEKEVLEENFGGDHPYKDKIRDHSGIKRFMSAYMLVYLRKS 512
>gnl|CDD|239131 cd02666, Peptidase_C19J, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 343
Score = 42.5 bits (100), Expect = 1e-04
Identities = 19/62 (30%), Positives = 26/62 (41%), Gaps = 7/62 (11%)
Query: 223 YSLYAIVCHSGILGGGHYVSYALN-PNGKWYAYNDSSCRQVSSGEM----DTSCA--YML 275
Y L+A+ H G GHY Y + W YND + V + E+ + A Y L
Sbjct: 281 YRLHAVFIHRGEASSGHYWVYIKDFEENVWRKYNDETVTVVPASEVFLFTLGNTATPYFL 340
Query: 276 FY 277
Y
Sbjct: 341 VY 342
>gnl|CDD|227532 COG5207, UBP14, Isopeptidase T [Posttranslational modification,
protein turnover, chaperones].
Length = 749
Score = 37.4 bits (86), Expect = 0.010
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 4/61 (6%)
Query: 223 YSLYAIVCHSG-ILGGGHYVSYA---LNPNGKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278
Y+L A++CH G + GHYV + KW ND SS E+ Y+ ++
Sbjct: 688 YALTAVICHKGDSIHAGHYVWFIRKNGKDKWKWVLKNDEKTVLNSSVEVLKDNGYIYLFK 747
Query: 279 R 279
R
Sbjct: 748 R 748
Score = 29.3 bits (65), Expect = 3.5
Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 148 REQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIV 201
EP ++ +E+F L + ++ C CK + AS+K I LP LI+
Sbjct: 455 EGNDEPQDIRKSVEAFF----LPDTIEWSCENCKGKKKASRKPFIKSLPKYLIL 504
>gnl|CDD|239135 cd02670, Peptidase_C19N, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 241
Score = 36.0 bits (83), Expect = 0.017
Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 19/80 (23%)
Query: 218 PFDLKYSLYAIVCHSGI-LGGGHYVSYA------------LNPNGKWYAYNDSSCRQVSS 264
K SL + VCH G L GHYV++ N +W ++D + R S
Sbjct: 162 CGKFKLSLCSAVCHRGTSLETGHYVAFVRYGSYSLTETDNEAYNAQWVFFDDMADRDGVS 221
Query: 265 GEMD------TSCAYMLFYE 278
+ YMLFY+
Sbjct: 222 NGFNIPAARLLEDPYMLFYQ 241
>gnl|CDD|239137 cd02672, Peptidase_C19P, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 268
Score = 33.6 bits (77), Expect = 0.093
Identities = 33/163 (20%), Positives = 48/163 (29%), Gaps = 49/163 (30%)
Query: 154 INLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPP----VLIVLRNTTVQS 209
L+ E + K +C C +Q + I LP VL++ + T
Sbjct: 117 STFLQLLKRSLDLE---KVTKAWCDTCCKYQPLEQTTSIRHLPDILLLVLVINLSVTNGE 173
Query: 210 HRL----------TRGHDPFDL----------------KYSLYAIVCHSGILG---GGHY 240
+ KY L VC I G H
Sbjct: 174 FDDINVVLPSGKVMQNKVSPKAIDHDKLVKNRGQESIYKYELVGYVCE--INDSSRGQHN 231
Query: 241 VSYALNPN-----GKWYAYNDSSCRQVSSGEMDTSCAYMLFYE 278
V + + N G+WY +ND VS AY+L Y+
Sbjct: 232 VVFVIKVNEESTHGRWYLFNDFLVTPVS------ELAYILLYQ 268
>gnl|CDD|217545 pfam03416, Peptidase_C54, Peptidase family C54.
Length = 277
Score = 30.8 bits (70), Expect = 0.81
Identities = 14/51 (27%), Positives = 22/51 (43%), Gaps = 6/51 (11%)
Query: 239 HYVSYALNPNGKWYAYNDSSC-----RQVSSGEMDTSCAY-MLFYERKDLD 283
H V A+ N K + +D + R++ +MD S A L + D D
Sbjct: 220 HTVQEAVTVNQKGFPVDDETYHCRSLRKLHFSDMDPSLAIGFLCRDEDDFD 270
>gnl|CDD|218155 pfam04575, DUF560, Protein of unknown function (DUF560). Family of
hypothetical bacterial proteins.
Length = 301
Score = 30.3 bits (69), Expect = 1.2
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
Query: 235 LGGGHYVSYALNPNGKWY----AYNDSSCRQVSSG 265
L G HY+ + LN GK+Y YN+ S R S G
Sbjct: 71 LKGNHYLEFRLNTYGKYYWDNKKYNELSVR-ASLG 104
>gnl|CDD|180247 PRK05767, rpl44e, 50S ribosomal protein L44e; Validated.
Length = 92
Score = 28.0 bits (63), Expect = 1.9
Identities = 7/9 (77%), Positives = 7/9 (77%)
Query: 176 YCPKCKTHQ 184
YCP CKTH
Sbjct: 10 YCPYCKTHT 18
>gnl|CDD|234230 TIGR03491, TIGR03491, RecB family nuclease, putative, TM0106
family. Members of this uncharacterized protein family
are found broadly but sporadically among bacteria. The
N-terminal region is homologous to the Cas4 protein of
CRISPR systems, although this protein family shows no
signs of association with CRISPR repeats.
Length = 457
Score = 29.6 bits (67), Expect = 2.4
Identities = 7/18 (38%), Positives = 10/18 (55%)
Query: 79 AITPDGMQCSLCSWTKFC 96
+ +C+LCSW K C
Sbjct: 182 EVFISRKKCTLCSWRKDC 199
>gnl|CDD|187685 cd09627, DOMON_murB_like, Domon-like domain of
UDP-N-acetylenolpyruvoylglucosamine reductase.
UDP-N-acetylenolpyruvoylglucosamine reductase (murB)
catalyzes an essential step in peptidoglycan
biosynthesis, the reduction of
UDP-N-acetylglucosamine-enolpyruvate to
UDP-N-acetylmuramate. A subset of these FAD-dependent
enzymes contains a C-terminal DOMON-like domain. DOMON
domains can be found in all three kindgoms of life and
are a diverse group of ligand binding domains that have
been shown to interact with sugars and hemes; initially
DOMON domains were suspected to confer protein-protein
interactions. The DOMON-like domain in murB may bind a
heme.
Length = 179
Score = 28.8 bits (65), Expect = 2.6
Identities = 12/35 (34%), Positives = 16/35 (45%)
Query: 236 GGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTS 270
G Y + L+P+G W AY RQ GE+
Sbjct: 75 GQPGYWEFNLSPSGHWNAYRFEGYRQRLEGELSAE 109
>gnl|CDD|88554 cd05175, PI3Kc_IA_alpha, Phosphoinositide 3-kinase (PI3K), class
IA, alpha isoform, catalytic domain; The PI3K catalytic
domain family is part of a larger superfamily that
includes the catalytic domains of other kinases such as
the typical serine/threonine/tyrosine protein kinases
(PKs), aminoglycoside phosphotransferase, choline
kinase, and RIO kinases. PI3Ks catalyze the transfer of
the gamma-phosphoryl group from ATP to the 3-hydroxyl of
the inositol ring of D-myo-phosphatidylinositol (PtdIns)
or its derivatives. PI3Ks can be divided into three main
classes (I, II, and III), defined by their substrate
specificity, regulation, and domain structure. Class I
PI3Ks are the only enzymes capable of converting
PtdIns(4,5)P2 to the critical second messenger
PtdIns(3,4,5)P3. Class I enzymes are heterodimers and
exist in multiple isoforms consisting of one catalytic
subunit (out of four isoforms) and one of several
regulatory subunits. They are further classified into
class IA (alpha, beta and delta) and IB (gamma). Class
IA enzymes contain an N-terminal p85 binding domain, a
Ras binding domain, a lipid binding C2 domain, a PI3K
homology domain of unknown function, and a C-terminal
ATP-binding cataytic domain. They associate with a
regulatory subunit of the p85 family and are activated
by tyrosine kinase receptors. PI3Kalpha plays an
important role in insulin signaling. It also mediates
physiologic heart growth and provides protection from
stress. Activating mutations of PI3Kalpha is associated
with diverse forms of cancer at high frequency.
Length = 366
Score = 29.3 bits (65), Expect = 2.6
Identities = 15/71 (21%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 126 HLRYQ-SSLEKVFEEHETCIASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQ 184
HL Q ++EK+ + K+++T+ + + + +E + + + + + P HQ
Sbjct: 3 HLSRQVEAMEKLINLTDILKQEKKDETQKVQMKFLVEQMRRPDFMDALQGFTSPLNPAHQ 62
Query: 185 LASKKLEIYRL 195
L + +LE R+
Sbjct: 63 LGNLRLEECRI 73
>gnl|CDD|239134 cd02669, Peptidase_C19M, A subfamily of Peptidase C19. Peptidase
C19 contains ubiquitinyl hydrolases. They are
intracellular peptidases that remove ubiquitin molecules
from polyubiquinated peptides by cleavage of isopeptide
bonds. They hydrolyze bonds involving the carboxyl group
of the C-terminal Gly residue of ubiquitin. The purpose
of the de-ubiquitination is thought to be editing of the
ubiquitin conjugates, which could rescue them from
degradation, as well as recycling of the ubiquitin. The
ubiquitin/proteasome system is responsible for most
protein turnover in the mammalian cell, and with over 50
members, family C19 is one of the largest families of
peptidases in the human genome.
Length = 440
Score = 28.1 bits (63), Expect = 6.5
Identities = 27/131 (20%), Positives = 48/131 (36%), Gaps = 25/131 (19%)
Query: 173 EKYYCPKCKTHQLASKKLEIYRLPPVLI------------VLRNTTVQSHRLT----RGH 216
+KY + + K+ I RLP LI +N T+ + + +
Sbjct: 310 KKYDGKTETELKDSLKRYLISRLPKYLIFHIKRFSKNNFFKEKNPTIVNFPIKNLDLSDY 369
Query: 217 DPFDL-------KYSLYAIVCHSGILGG-GHYVSYALNP-NGKWYAYNDSSCRQVSSGEM 267
FD KY+L A + H G G + + KW+ D + ++V +
Sbjct: 370 VHFDKPSLNLSTKYNLVANIVHEGTPQEDGTWRVQLRHKSTNKWFEIQDLNVKEVLPQLI 429
Query: 268 DTSCAYMLFYE 278
S +Y+ +E
Sbjct: 430 FLSESYIQIWE 440
>gnl|CDD|240319 PTZ00226, PTZ00226, fumarate hydratase; Provisional.
Length = 570
Score = 28.1 bits (63), Expect = 7.5
Identities = 11/44 (25%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 276 FYERKDLDLGAYLPDVSEREMTDTKEIDEDYDENEMKKVCAVIS 319
+ E+ + D YLPD++E +++ T + D ++ M+++ +S
Sbjct: 363 YLEQLEHDPAQYLPDITEDDLSKTPVVKIDLNQP-MEEILKQLS 405
>gnl|CDD|223452 COG0375, HybF, Zn finger protein HypA/HybF (possibly regulating
hydrogenase expression) [General function prediction
only].
Length = 115
Score = 26.5 bits (59), Expect = 8.9
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 8/40 (20%)
Query: 159 CLESFTKEEHLGENEKYYCPKCKTHQL---ASKKLEIYRL 195
C + EE Y CPKC + L +L I +
Sbjct: 76 CGQEVELEELD-----YRCPKCGSINLRIIGGDELIIKSI 110
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.135 0.427
Gapped
Lambda K H
0.267 0.0677 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 16,026,624
Number of extensions: 1456847
Number of successful extensions: 1270
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1230
Number of HSP's successfully gapped: 43
Length of query: 321
Length of database: 10,937,602
Length adjustment: 97
Effective length of query: 224
Effective length of database: 6,635,264
Effective search space: 1486299136
Effective search space used: 1486299136
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 59 (26.6 bits)