RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2608
(321 letters)
>d2hd5a1 d.3.1.9 (A:211-521) Ubiquitin carboxyl-terminal hydrolase
2, USP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 336
Score = 100 bits (248), Expect = 7e-25
Identities = 57/212 (26%), Positives = 86/212 (40%), Gaps = 22/212 (10%)
Query: 88 SLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDWDPTALHLRYQSSLEKVFEEHETCIASK 147
L K + + + + T Y S++ F + IA +
Sbjct: 126 HLPDDEKGRQMWRKYLEREDSRIGDLFVGQLKSSLTCTDCGYCSTVFDPFWDLSLPIAKR 185
Query: 148 REQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLR---- 203
+ L C+ FTKE+ L +EK C +C+ + KK I R P +L++
Sbjct: 186 GYP--EVTLMDCMRLFTKEDVLDGDEKPTCCRCRGRKRCIKKFSIQRFPKILVLHLKRFS 243
Query: 204 ---------NTTVQSHRLTRGHDPF------DLKYSLYAIVCHSGILGGGHYVSYALNP- 247
T V F Y+LYA+ HSG GGHY +Y +P
Sbjct: 244 ESRIRTSKLTTFVNFPLRDLDLREFASENTNHAVYNLYAVSNHSGTTMGGHYTAYCRSPG 303
Query: 248 NGKWYAYNDSSCRQVSSGEMDTSCAYMLFYER 279
G+W+ +NDSS +SS ++ TS AY+LFYE
Sbjct: 304 TGEWHTFNDSSVTPMSSSQVRTSDAYLLFYEL 335
>d2gfoa1 d.3.1.9 (A:762-1109) Ubiquitin carboxyl-terminal hydrolase
8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 348
Score = 99.4 bits (246), Expect = 2e-24
Identities = 59/307 (19%), Positives = 101/307 (32%), Gaps = 32/307 (10%)
Query: 5 TAYFLSAHKYRPILFGIPVIVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPNHAMD 64
YF I + + +A+W R ++P T +
Sbjct: 41 ADYFNRNCYQDDINRSNLLGHKGEVAEEFGIIMKALWTGQYRYISPKDFKITIGKINDQF 100
Query: 65 CDDSLGYEYPFVLKAITPDGMQCSLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDWDPTA 124
S +L + + K D + +
Sbjct: 101 AGYSQQDSQELLLFLMDGLHEDLNKADNRKRYKEENNDHLDDFKAAEHAWQKHKQLNESI 160
Query: 125 LHLRYQSSL-----------EKVFEEHETCIASKREQTEPINLAYCLESFTKEEHLGENE 173
+ +Q + E ++ T L CL F+KEE L +N
Sbjct: 161 IVALFQGQFKSTVQCLTCHKKSRTFEAFMYLSLPLASTSKCTLQDCLRLFSKEEKLTDNN 220
Query: 174 KYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQS--------------------HRLT 213
++YC C+ + + KK+EI++LPPVL+V +
Sbjct: 221 RFYCSHCRARRDSLKKIEIWKLPPVLLVHLKRFSYDGRWKQKLQTSVDFPLENLDLSQYV 280
Query: 214 RGHDPFDLKYSLYAIVCHSGILGGGHYVSYALNP-NGKWYAYNDSSCRQVSSGEMDTSCA 272
G KY+L+++ H G L GGHY +Y N +W+ ++D +S + +S A
Sbjct: 281 IGPKNNLKKYNLFSVSNHYGGLDGGHYTAYCKNAARQRWFKFDDHEVSDISVSSVKSSAA 340
Query: 273 YMLFYER 279
Y+LFY
Sbjct: 341 YILFYTS 347
>d1vjva_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 6
{Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 397
Score = 76.7 bits (187), Expect = 2e-16
Identities = 28/198 (14%), Positives = 63/198 (31%), Gaps = 18/198 (9%)
Query: 96 CLGCKLACDDTEFNYSSTTHLAIDWD-PTALHLRYQSSLEKVFEEHETCIASKREQTEPI 154
L + + + + + + P L + + E E+ + ++ + E
Sbjct: 207 FLTVQYVRFFWKRSTNKKSKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKN 266
Query: 155 NLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSHRLTR 214
++ + EN + +T ++ + L + +
Sbjct: 267 EKEREIKRRKFDPSSSENVMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPSC 326
Query: 215 GHDPFDLKYSLYAIVCHSG-ILGGGHYVSYALNP--NGKWYAYNDSSCRQVS-------S 264
Y+L ++ H G GHY ++ + KWY +ND V +
Sbjct: 327 -------VYNLIGVITHQGANSESGHYQAFIRDELDENKWYKFNDDKVSVVEKEKIESLA 379
Query: 265 GEMDTSCAYMLFYERKDL 282
G ++ A +L Y+ L
Sbjct: 380 GGGESDSALILMYKGFGL 397
Score = 31.3 bits (69), Expect = 0.15
Identities = 23/221 (10%), Positives = 54/221 (24%), Gaps = 11/221 (4%)
Query: 103 CDDTEFNYSSTTHLAIDWDPTALHLRYQSSLEKVFEEHETCIASKREQTEPINLAYCLES 162
D E ++I + ++ + ++ ++ E + C S
Sbjct: 106 QDAEELFTQLFHSMSIVFGDKFSED-FRIQFKTTIKDTANDNDITVKENESDSKLQCHIS 164
Query: 163 FTK-------EEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVLIVLRNTTVQSHRLTRG 215
T E L E + + + S + +I RLP L V +
Sbjct: 165 GTTNFMRNGLLEGLNEKIEKRSDLTGANSIYSVEKKISRLPKFLTVQYVRFFWKRSTNKK 224
Query: 216 H---DPFDLKYSLYAIVCHSGILGGGHYVSYALNPNGKWYAYNDSSCRQVSSGEMDTSCA 272
+ L + + + + +S
Sbjct: 225 SKILRKVVFPFQLDVADMLTPEYAAEKVKVRDELRKVEKEKNEKEREIKRRKFDPSSSEN 284
Query: 273 YMLFYERKDLDLGAYLPDVSEREMTDTKEIDEDYDENEMKK 313
M E+ + + + + K + ++ E
Sbjct: 285 VMTPREQYETQVALNESEKDQWLEEYKKHFPPNLEKGENPS 325
>d2ayna1 d.3.1.9 (A:100-482) Ubiquitin carboxyl-terminal hydrolase
14 {Human (Homo sapiens) [TaxId: 9606]}
Length = 383
Score = 75.9 bits (185), Expect = 4e-16
Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 8/67 (11%)
Query: 222 KYSLYAIVCHSGI-LGGGHYVSYALNPNGKWYAYNDSSCRQVS-------SGEMDTSCAY 273
Y L A++ H G GHYVS+ +W ++D V+ SG D AY
Sbjct: 317 YYDLQAVLTHQGRSSSSGHYVSWVKRKQDEWIKFDDDKVSIVTPEDILRLSGGGDWHIAY 376
Query: 274 MLFYERK 280
+L Y +
Sbjct: 377 VLLYGPR 383
>d1nbfa_ d.3.1.9 (A:) Ubiquitin carboxyl-terminal hydrolase 7 (USP7,
HAUSP) {Human (Homo sapiens) [TaxId: 9606]}
Length = 347
Score = 69.7 bits (169), Expect = 4e-14
Identities = 48/268 (17%), Positives = 82/268 (30%), Gaps = 48/268 (17%)
Query: 85 MQCSLCSWTKFCLGCKLACDDTEFNYSSTTHLAIDWDPTALHLRYQSSLEKVFEEHETCI 144
LC + K+ E + + Y+S + + + + I
Sbjct: 88 DVQELCRVLLDNVENKMKGTCVEGTIPKLFRGKMVSYIQCKEVDYRSDRREDYYDIQLSI 147
Query: 145 ASKREQTEPINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYRLPPVL----- 199
K+ + E L + KY + + A K ++ LPPVL
Sbjct: 148 KGKKNIF------ESFVDYVAVEQLDGDNKYDAGEHGLQE-AEKGVKFLTLPPVLHLQLM 200
Query: 200 -----------------IVLRNTTVQSHRLTRGHDPFDLKYSLYAIVCHSGILGGGHYVS 242
L + Y L+A++ HSG GGHYV
Sbjct: 201 RFMYDPQTDQNIKINDRFEFPEQLPLDEFLQKTDPKDPANYILHAVLVHSGDNHGGHYVV 260
Query: 243 YALNP-NGKWYAYNDSSCRQVSSGEM---------------DTSCAYMLFYERKDLDLGA 286
Y +GKW ++D + + E + AYML Y R+ L
Sbjct: 261 YLNPKGDGKWCKFDDDVVSRCTKEEAIEHNYGGHDDDLSVRHCTNAYMLVYIRES-KLSE 319
Query: 287 YLPDVSEREMTDT--KEIDEDYDENEMK 312
L V++ ++ + + E+ K
Sbjct: 320 VLQAVTDHDIPQQLVERLQEEKRIEAQK 347
>d1wida_ b.142.1.2 (A:) DNA-binding protein RAV1 {Thale cress
(Arabidopsis thaliana) [TaxId: 3702]}
Length = 117
Score = 29.9 bits (67), Expect = 0.15
Identities = 12/70 (17%), Positives = 20/70 (28%), Gaps = 9/70 (12%)
Query: 46 RLVTP-------LPPLETSPPNHA--MDCDDSLGYEYPFVLKAITPDGMQCSLCSWTKFC 96
RLV P P ++ ++ +D G + F W++F
Sbjct: 21 RLVIPKHHAEKHFPLPSSNVSVKGVLLNFEDVNGKVWRFRYSYWNSSQSYVLTKGWSRFV 80
Query: 97 LGCKLACDDT 106
L D
Sbjct: 81 KEKNLRAGDV 90
>d1vqo31 g.41.8.3 (3:1-92) Ribosomal protein L44e {Archaeon
Haloarcula marismortui [TaxId: 2238]}
Length = 92
Score = 28.1 bits (63), Expect = 0.43
Identities = 8/21 (38%), Positives = 10/21 (47%), Gaps = 2/21 (9%)
Query: 174 KYYCPKCKTHQLASKKLEIYR 194
YCP C HQ ++E R
Sbjct: 8 NTYCPHCNEHQ--EHEVEKVR 26
>d1hk8a_ c.7.1.3 (A:) Class III anaerobic ribonucleotide reductase
NRDD subunit {Bacteriophage T4 [TaxId: 10665]}
Length = 561
Score = 29.9 bits (67), Expect = 0.47
Identities = 11/107 (10%), Positives = 31/107 (28%), Gaps = 24/107 (22%)
Query: 110 YSSTTHLAIDWDPTAL-HLRYQSSLEKVF-----------------EEHETCIASKREQT 151
Y+++ H++++ + T + ++ + + E +
Sbjct: 447 YTNSFHVSVEENITPFEKISREAPYHFIATGGHISYVELPDMKNNLKGLEAVWDYAAQHL 506
Query: 152 E----PINLAYCLESFTKEEHLGENEKYYCPKCKTHQLASKKLEIYR 194
+ + + C + E + C C KK+ R
Sbjct: 507 DYFGVNMPVDKCFTCGSTHEMTPTENGFVCSICGETD--PKKMNTIR 551
>d1moxa1 c.10.2.5 (A:1-162) EGF receptor extracellular domain {Human
(Homo sapiens) [TaxId: 9606]}
Length = 162
Score = 26.4 bits (58), Expect = 3.7
Identities = 8/39 (20%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 190 LEIYRLPPVLIVLRNTTVQSHRLTRGHDPFDLKYSLYAI 228
+ I I L N ++ RG+ ++ Y+L +
Sbjct: 65 VLIALNTVERIPLENL-----QIIRGNMYYENSYALAVL 98
>d1pvna1 c.1.5.1 (A:2-99,A:231-494) Inosine monophosphate
dehydrogenase (IMPDH) {Tritrichomonas foetus [TaxId:
5724]}
Length = 362
Score = 26.3 bits (57), Expect = 4.9
Identities = 15/124 (12%), Positives = 34/124 (27%), Gaps = 16/124 (12%)
Query: 2 LRQTAYFLSAHKYRPILFGIPVIVPCSDTTTQQDLYQAVWLQVARLVTPLPPLETSPPNH 61
L + I IP++ + + + + A+ L ++ +
Sbjct: 32 LSTPLVKFQKGQQSEINLKIPLVSAIMQSVSGEKM--AIALAREGGISFI---------F 80
Query: 62 AMDCDDSLGYEYPFVLKAITPDGMQCSLCSWTKFC-----LGCKLACDDTEFNYSSTTHL 116
+S V G + + + G + C D+ +S +
Sbjct: 81 GSQSIESQAAMVHAVKNFRYLVGAGINTRDFRERVPALVEAGADVLCIDSSDGFSEWQKI 140
Query: 117 AIDW 120
I W
Sbjct: 141 TIGW 144
>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
protein 10, ZMYND10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 47
Score = 24.2 bits (52), Expect = 5.0
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 8/46 (17%)
Query: 77 LKAITPDGMQCSLCSW--TKFCLGCKLACDDTEFNYSSTTHLAIDW 120
L+A+ P+ +C+ CS +K C C+ Y W
Sbjct: 1 LEAVAPERPRCAYCSAEASKRCSRCQNE------WYCCRECQVKHW 40
>d1wixa_ a.40.3.1 (A:) Hook homolog 1, Hook1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 164
Score = 25.2 bits (55), Expect = 7.9
Identities = 8/29 (27%), Positives = 15/29 (51%)
Query: 290 DVSEREMTDTKEIDEDYDENEMKKVCAVI 318
+SE + D +I E D E+ ++ +I
Sbjct: 92 QISEELIPDLNQITECADPVELGRLLQLI 120
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.320 0.135 0.427
Gapped
Lambda K H
0.267 0.0742 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,246,890
Number of extensions: 57669
Number of successful extensions: 197
Number of sequences better than 10.0: 1
Number of HSP's gapped: 185
Number of HSP's successfully gapped: 22
Length of query: 321
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 236
Effective length of database: 1,240,546
Effective search space: 292768856
Effective search space used: 292768856
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.2 bits)