BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2609
(161 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U2R|A Chain A, Crystal Structure Of Adp-Ribosylated Ribosomal Translocase
From Saccharomyces Cerevisiae
pdb|1ZM2|A Chain A, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|C Chain C, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|E Chain E, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|A Chain A, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|C Chain C, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|E Chain E, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|A Chain A, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|C Chain C, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|E Chain E, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|A Chain A, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|C Chain C, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|E Chain E, Structure Of Eef2-Eta In Complex With Pj34
pdb|2P8X|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-Eef2:gdpnp
Cryo-Em Reconstruction
pdb|2P8Y|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdp:sordarin Cryo-Em Reconstruction
pdb|2P8Z|T Chain T, Fitted Structure Of Adpr-Eef2 In The 80s:adpr-
Eef2:gdpnp:sordarin Cryo-Em Reconstruction
pdb|3B78|A Chain A, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|C Chain C, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|E Chain E, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B82|A Chain A, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|C Chain C, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|E Chain E, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B8H|A Chain A, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|C Chain C, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|E Chain E, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|2ZIT|A Chain A, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|C Chain C, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|E Chain E, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 842
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 109/150 (72%), Gaps = 10/150 (6%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYK-DNKDTPE--------EYLINLIDSPGHVDFSS 56
+ + D+RKDEQERGIT+KS++ISLY + ++D E +LINLIDSPGHVDFSS
Sbjct: 54 ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSS 113
Query: 57 EVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLD 116
EV+ A+R+ DG ++VVD +EG+C QT+ L+QA E+I+P++V+NK+DR +LE+++S D
Sbjct: 114 EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173
Query: 117 IYVHLSQLLEQVNAVMGELFASQVMDETAV 146
+Y ++ +E VN ++ +A +V+ + V
Sbjct: 174 LYQTFARTVESVNVIV-STYADEVLGDVQV 202
>pdb|1N0V|C Chain C, Crystal Structure Of Elongation Factor 2
pdb|1N0V|D Chain D, Crystal Structure Of Elongation Factor 2
pdb|1N0U|A Chain A, Crystal Structure Of Yeast Elongation Factor 2 In Complex
With Sordarin
pdb|1S1H|T Chain T, Structure Of The Ribosomal 80s-Eef2-Sordarin Complex From
Yeast Obtained By Docking Atomic Models For Rna And
Protein Components Into A 11.7 A Cryo-Em Map. This File,
1s1h, Contains 40s Subunit. The 60s Ribosomal Subunit Is
In File 1s1i.
pdb|2E1R|A Chain A, Structure Of Eef2 In Complex With A Sordarin Derivative
pdb|2NPF|A Chain A, Structure Of Eef2 In Complex With Moriniafungin
pdb|2NPF|B Chain B, Structure Of Eef2 In Complex With Moriniafungin
pdb|2P8W|T Chain T, Fitted Structure Of Eef2 In The 80s:eef2:gdpnp Cryo-Em
Reconstruction
pdb|3DNY|T Chain T, Fitting Of The Eef2 Crystal Structure Into The Cryo-Em
Density Map Of The Eef2.80s.Alf4-.Gdp Complex
Length = 842
Score = 145 bits (365), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 109/150 (72%), Gaps = 10/150 (6%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYK-DNKDTPE--------EYLINLIDSPGHVDFSS 56
+ + D+RKDEQERGIT+KS++ISLY + ++D E +LINLIDSPGHVDFSS
Sbjct: 54 ARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSS 113
Query: 57 EVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLD 116
EV+ A+R+ DG ++VVD +EG+C QT+ L+QA E+I+P++V+NK+DR +LE+++S D
Sbjct: 114 EVTAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKED 173
Query: 117 IYVHLSQLLEQVNAVMGELFASQVMDETAV 146
+Y ++ +E VN ++ +A +V+ + V
Sbjct: 174 LYQTFARTVESVNVIV-STYADEVLGDVQV 202
>pdb|3DEG|C Chain C, Complex Of Elongating Escherichia Coli 70s Ribosome And
Ef4(Lepa)- Gmppnp
Length = 545
Score = 83.2 bits (204), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Query: 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVR 63
M + +DS E+ERGIT+K+ S++L YK + E Y +N ID+PGHVDFS EVS ++
Sbjct: 36 MEAQVLDSMDLERERGITIKAQSVTLDYKASDG--ETYQLNFIDTPGHVDFSYEVSRSLA 93
Query: 64 LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
C+G ++VVD +G+ AQT A ++ + VLNKID
Sbjct: 94 ACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKID 134
>pdb|3CB4|D Chain D, The Crystal Structure Of Lepa
pdb|3CB4|A Chain A, The Crystal Structure Of Lepa
pdb|3CB4|B Chain B, The Crystal Structure Of Lepa
pdb|3CB4|C Chain C, The Crystal Structure Of Lepa
pdb|3CB4|E Chain E, The Crystal Structure Of Lepa
pdb|3CB4|F Chain F, The Crystal Structure Of Lepa
Length = 599
Score = 82.8 bits (203), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 45/101 (44%), Positives = 65/101 (64%), Gaps = 2/101 (1%)
Query: 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVR 63
M + +DS E+ERGIT+K+ S++L YK + E Y +N ID+PGHVDFS EVS ++
Sbjct: 36 MEAQVLDSMDLERERGITIKAQSVTLDYKASDG--ETYQLNFIDTPGHVDFSYEVSRSLA 93
Query: 64 LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
C+G ++VVD +G+ AQT A ++ + VLNKID
Sbjct: 94 ACEGALLVVDAGQGVEAQTLANCYTAMEMDLEVVPVLNKID 134
>pdb|4FN5|A Chain A, Elongation Factor G 1 (Pseudomonas Aeruginosa) In Complex
With Argyrin B
Length = 709
Score = 80.5 bits (197), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 34/91 (37%), Positives = 61/91 (67%)
Query: 15 EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74
EQERGIT+ S++++ ++K ++ + Y +N+ID+PGHVDF+ EV ++R+ DG ++V
Sbjct: 59 EQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCG 118
Query: 75 VEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
G+ Q++ +QA + I+ +NK+DR
Sbjct: 119 TSGVEPQSETVWRQANKYGVPRIVYVNKMDR 149
>pdb|3J0E|H Chain H, Models For The T. Thermophilus Ribosome Recycling Factor
And The E. Coli Elongation Factor G Bound To The E. Coli
Post-Termination Complex
Length = 702
Score = 79.3 bits (194), Expect = 8e-16, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 64/101 (63%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + EQERGIT+ S++ + ++ E + IN+ID+PGHVDF+ EV ++R+
Sbjct: 46 AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVL 105
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106
DG ++V V G+ Q++ +QA K+ I +NK+DR+
Sbjct: 106 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 146
>pdb|2RDO|7 Chain 7, 50s Subunit With Ef-G(Gdpnp) And Rrf Bound
Length = 704
Score = 79.3 bits (194), Expect = 9e-16, Method: Composition-based stats.
Identities = 38/101 (37%), Positives = 64/101 (63%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + EQERGIT+ S++ + ++ E + IN+ID+PGHVDF+ EV ++R+
Sbjct: 47 AATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVL 106
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106
DG ++V V G+ Q++ +QA K+ I +NK+DR+
Sbjct: 107 DGAVMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147
>pdb|1EFG|A Chain A, The Crystal Structure Of Elongation Factor G Complexed
With Gdp, At 2.7 Angstroms Resolution
pdb|2EFG|A Chain A, Translational Elongation Factor G Complexed With Gdp
pdb|1JQM|B Chain B, Fitting Of L11 Protein And Elongation Factor G (Ef-G) In
The Cryo-Em Map Of E. Coli 70s Ribosome Bound With Ef-G,
Gdp And Fusidic Acid
Length = 691
Score = 77.0 bits (188), Expect = 4e-15, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHR-------INIIDTPGHVDFTIEVERSMRVL 101
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|1KTV|A Chain A, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1KTV|B Chain B, Crystal Structure Of Elongation Factor G Dimer Without
Nucleotide
pdb|1DAR|A Chain A, Elongation Factor G In Complex With Gdp
pdb|1ELO|A Chain A, Elongation Factor G Without Nucleotide
pdb|2OM7|L Chain L, Structural Basis For Interaction Of The Ribosome With The
Switch Regions Of Gtp-Bound Elongation Factors
pdb|2WRI|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 1 Of 4).
pdb|2WRK|Y Chain Y, The Structure Of The Ribosome With Elongation Factor G
Trapped In The Post-Translocational State (Part 3 Of 4).
pdb|2XSY|Y Chain Y, Trna Tranlocation On The 70s Ribosome: The Pre-
Translocational Translocation Intermediate Ti(Pre)
pdb|2XUY|Y Chain Y, Trna Translocation On The 70s Ribosome: The Post-
Translocational Translocation Intermediate Ti(Post)
pdb|3J18|Y Chain Y, Structure Of The Bacterial Ribosome Complexed By
Tmrna-Smpb And Ef-G During Translocation And Mld-Loading
(30s Subunit)
Length = 691
Score = 77.0 bits (188), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHR-------INIIDTPGHVDFTIEVERSMRVL 101
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|1FNM|A Chain A, Structure Of Thermus Thermophilus Ef-G H573a
pdb|1PN6|A Chain A, Domain-Wise Fitting Of The Crystal Structure Of
T.Thermophilus Ef-G Into The Low Resolution Map Of The
Release Complex.Puromycin.Efg.Gdpnp Of E.Coli 70s
Ribosome
Length = 691
Score = 77.0 bits (188), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHR-------INIIDTPGHVDFTIEVERSMRVL 101
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2J7K|A Chain A, Crystal Structure Of The T84a Mutant Ef-G:gdpcp Complex
Length = 691
Score = 77.0 bits (188), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHR-------INIIDAPGHVDFTIEVERSMRVL 101
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|3IZP|E Chain E, Conformation Of Ef-G During Translocation
Length = 688
Score = 77.0 bits (188), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHR-------INIIDTPGHVDFTIEVERSMRVL 101
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2BM0|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant T84a
Length = 691
Score = 76.6 bits (187), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHR-------INIIDAPGHVDFTIEVERSMRVL 101
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2BV3|A Chain A, Crystal Structure Of A Mutant Elongation Factor G Trapped
With A Gtp Analogue
Length = 691
Score = 76.6 bits (187), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHR-------INIIDAPGHVDFTIEVERSMRVL 101
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2BM1|A Chain A, Ribosomal Elongation Factor G (Ef-G) Fusidic Acid
Resistant Mutant G16v
Length = 691
Score = 76.6 bits (187), Expect = 5e-15, Method: Composition-based stats.
Identities = 37/100 (37%), Positives = 64/100 (64%), Gaps = 7/100 (7%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
++ MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+
Sbjct: 49 AATMDFMEQERERGITITAAVTTCFWKDHR-------INIIDTPGHVDFTIEVERSMRVL 101
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 102 DGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 141
>pdb|2YWE|A Chain A, Crystal Structure Of Lepa From Aquifex Aeolicus
pdb|2YWF|A Chain A, Crystal Structure Of Gmppnp-Bound Lepa From Aquifex
Aeolicus
pdb|2YWH|A Chain A, Crystal Structure Of Gdp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 76.3 bits (186), Expect = 7e-15, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 64/96 (66%), Gaps = 2/96 (2%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ E+ERGIT+K ++ ++YK KD Y ++LID+PGHVDFS EVS A+ C+G
Sbjct: 43 LDTLDVERERGITVKMQAVRMFYK-AKDG-NTYKLHLIDTPGHVDFSYEVSRALAACEGA 100
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
++++D +GI AQT +A + + I V+NKID
Sbjct: 101 LLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKID 136
>pdb|2YWG|A Chain A, Crystal Structure Of Gtp-Bound Lepa From Aquifex Aeolicus
Length = 600
Score = 75.9 bits (185), Expect = 9e-15, Method: Composition-based stats.
Identities = 42/96 (43%), Positives = 63/96 (65%), Gaps = 2/96 (2%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ E+ERGIT+K ++ +YK KD Y ++LID+PGHVDFS EVS A+ C+G
Sbjct: 43 LDTLDVERERGITVKXQAVRXFYK-AKDG-NTYKLHLIDTPGHVDFSYEVSRALAACEGA 100
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
++++D +GI AQT +A + + I V+NKID
Sbjct: 101 LLLIDASQGIEAQTVANFWKAVEQDLVIIPVINKID 136
>pdb|2XEX|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
pdb|2XEX|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G
Length = 693
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 65/108 (60%), Gaps = 7/108 (6%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
+S MD + EQ+RGIT+ S++ + + E + +N+ID+PGHVDF+ EV ++R+
Sbjct: 47 ASQMDWMEQEQDRGITITSAATTAAW-------EGHRVNIIDTPGHVDFTVEVERSLRVL 99
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLS 113
DG + V+D G+ QT+ +QA + I+ +NK+D+L + S
Sbjct: 100 DGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYS 147
>pdb|3ZZ0|A Chain A, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
pdb|3ZZ0|B Chain B, Crystal Structure Of Ribosomal Elongation Factor (Ef)-G
From Staphylococcus Aureus With A Fusidic Acid
Hyper-Sensitivity Mutation M16i
Length = 693
Score = 68.2 bits (165), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/108 (35%), Positives = 65/108 (60%), Gaps = 7/108 (6%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
+S MD + EQ+RGIT+ S++ + + E + +N+ID+PGHVDF+ EV ++R+
Sbjct: 47 ASQMDWMEQEQDRGITITSAATTAAW-------EGHRVNIIDTPGHVDFTVEVERSLRVL 99
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLS 113
DG + V+D G+ QT+ +QA + I+ +NK+D+L + S
Sbjct: 100 DGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYS 147
>pdb|3ZZT|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
pdb|3ZZT|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With A Fusidic-Acid-Resistant Mutation F88l
Length = 693
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
+S MD + EQ+RGIT+ S++ + + E + +N+ID+PGHVD + EV ++R+
Sbjct: 47 ASQMDWMEQEQDRGITITSAATTAAW-------EGHRVNIIDTPGHVDLTVEVERSLRVL 99
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLS 113
DG + V+D G+ QT+ +QA + I+ +NK+D+L + S
Sbjct: 100 DGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYS 147
>pdb|3ZZU|A Chain A, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
pdb|3ZZU|B Chain B, Crystal Structure Of Staphylococcus Aureus Elongation
Factor G With Mutations M16i And F88l
Length = 693
Score = 65.5 bits (158), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/108 (34%), Positives = 64/108 (59%), Gaps = 7/108 (6%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
+S MD + EQ+RGIT+ S++ + + E + +N+ID+PGHVD + EV ++R+
Sbjct: 47 ASQMDWMEQEQDRGITITSAATTAAW-------EGHRVNIIDTPGHVDLTVEVERSLRVL 99
Query: 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLS 113
DG + V+D G+ QT+ +QA + I+ +NK+D+L + S
Sbjct: 100 DGAVTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKLGANFEYS 147
>pdb|3VQT|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VQT|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|A Chain A, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|B Chain B, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|C Chain C, Crystal Structure Analysis Of The Translation Factor Rf3
pdb|3VR1|D Chain D, Crystal Structure Analysis Of The Translation Factor Rf3
Length = 548
Score = 65.1 bits (157), Expect = 2e-11, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 11/112 (9%)
Query: 15 EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74
E+ERGI++ +S + Y+D ++NL+D+PGH DFS + + D ++V+D
Sbjct: 81 ERERGISVTTSVMQFPYRDR-------VVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDA 133
Query: 75 VEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLE 126
+G+ AQT+ + + + +NK+DR L PLD+ + Q L+
Sbjct: 134 AKGVEAQTRKLMDVCRMRATPVMTFVNKMDR----EALHPLDVMADIEQHLQ 181
>pdb|3J25|A Chain A, Structural Basis For Tetm-Mediated Tetracycline Resistance
Length = 638
Score = 62.8 bits (151), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 55/91 (60%), Gaps = 7/91 (7%)
Query: 15 EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74
E++RGIT+++ S +++ K +N+ID+PGH+DF +EV ++ + DG I+++
Sbjct: 48 ERQRGITIQTGITSFQWENTK-------VNIIDTPGHMDFLAEVYRSLSVLDGAILLISA 100
Query: 75 VEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
+G+ AQT++ I I +NKID+
Sbjct: 101 KDGVQAQTRILFHALRKMGIPTIFFINKIDQ 131
>pdb|1ZN0|B Chain B, Coordinates Of Rrf And Ef-G Fitted Into Cryo-Em Map Of The
50s Subunit Bound With Both Ef-G (Gdpnp) And Rrf
Length = 655
Score = 62.4 bits (150), Expect = 1e-10, Method: Composition-based stats.
Identities = 33/104 (31%), Positives = 61/104 (58%), Gaps = 10/104 (9%)
Query: 5 VSSYMDSRKDEQERGITMKSSSISL---YYKDNKDTPEEYLINLIDSPGHVDFSSEVSTA 61
+++++D+ K I + I++ ++KD++ IN+ID+PGHVDF+ EV +
Sbjct: 12 IAAHIDAGKTTTTERILYYTGRIAVTTCFWKDHR-------INIIDTPGHVDFTIEVERS 64
Query: 62 VRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
+R+ DG I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 65 MRVLDGAIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDK 108
>pdb|3TR5|A Chain A, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|B Chain B, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|C Chain C, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
pdb|3TR5|D Chain D, Structure Of A Peptide Chain Release Factor 3 (Prfc) From
Coxiella Burnetii
Length = 528
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 31/92 (33%), Positives = 50/92 (54%), Gaps = 9/92 (9%)
Query: 15 EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74
E++RGI++ +S YKD YLINL+D+PGH DF+ + + D + V+D
Sbjct: 63 EKQRGISVTTSVXQFPYKD-------YLINLLDTPGHADFTEDTYRTLTAVDSALXVIDA 115
Query: 75 VEGICAQTQVALKQAWLEKIQPILV-LNKIDR 105
+G+ +T + L + + PI +NK DR
Sbjct: 116 AKGVEPRT-IKLXEVCRLRHTPIXTFINKXDR 146
>pdb|3UOQ|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome (Without
Viomycin)
Length = 534
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 15 EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74
E++RGI++ +S + Y D L+NL+D+PGH DFS + + D ++V+D
Sbjct: 63 EKQRGISITTSVMQFPYHD-------CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDA 115
Query: 75 VEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107
+G+ +T+ ++ L + +NK+DR I
Sbjct: 116 AKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDI 148
>pdb|2H5E|A Chain A, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2H5E|B Chain B, Crystal Structure Of E.Coli Polypeptide Release Factor Rf3
pdb|2O0F|A Chain A, Docking Of The Modified Rf3 X-Ray Structure Into Cryo-Em
Map Of E.Coli 70s Ribosome Bound With Rf3
pdb|3ZVO|Y Chain Y, Crystal Structure Of The Hybrid State Of Ribosome In
Complex With The Guanosine Triphosphatase Release Factor
3
pdb|3SFS|W Chain W, Crystal Structure Of Release Factor Rf3 Trapped In The Gtp
State On A Rotated Conformation Of The Ribosome
Length = 529
Score = 52.4 bits (124), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 51/93 (54%), Gaps = 7/93 (7%)
Query: 15 EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74
E++RGI++ +S + Y D L+NL+D+PGH DFS + + D ++V+D
Sbjct: 63 EKQRGISITTSVMQFPYHD-------CLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDA 115
Query: 75 VEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107
+G+ +T+ ++ L + +NK+DR I
Sbjct: 116 AKGVEDRTRKLMEVTRLRDTPILTFMNKLDRDI 148
>pdb|3U6B|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6B|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldi028
pdb|3U6K|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U6K|B Chain B, Ef-Tu (Escherichia Coli) In Complex With Nvp-Ldk733
pdb|3U2Q|A Chain A, Ef-Tu (Escherichia Coli) In Complex With Nvp-Lff571
pdb|4G5G|A Chain A, Ef-Tu (Escherichia Coli) Complexed With Nvp-Ldu796
Length = 394
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ +S + DTP + + +D PGH D+ + T DG
Sbjct: 50 IDNAPEEKARGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I I+ LNK D
Sbjct: 103 ILVVAATDGPMPQTREHILLGRQVGVPYI--IVFLNKCD 139
>pdb|1OB2|A Chain A, E. Coli Elongation Factor Ef-Tu Complexed With The
Antibiotic Kirromycin, A Gtp Analog, And Phe-Trna
Length = 393
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ +S + DTP + + +D PGH D+ + T DG
Sbjct: 49 IDNAPEEKARGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGA 101
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I I+ LNK D
Sbjct: 102 ILVVAATDGPMPQTREHILLGRQVGVPYI--IVFLNKCD 138
>pdb|1DG1|G Chain G, Whole, Unmodified, Ef-Tu(Elongation Factor Tu).
pdb|1DG1|H Chain H, Whole, Unmodified, Ef-Tu(Elongation Factor Tu)
Length = 394
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ +S + DTP + + +D PGH D+ + T DG
Sbjct: 50 IDNAPEEKARGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I I+ LNK D
Sbjct: 103 ILVVAATDGPMPQTREHILLGRQVGVPYI--IVFLNKCD 139
>pdb|1EFC|A Chain A, Intact Elongation Factor From E.Coli
pdb|1EFC|B Chain B, Intact Elongation Factor From E.Coli
pdb|1LS2|A Chain A, Fitting Of Ef-Tu And Trna In The Low Resolution Cryo-Em
Map Of An Ef-Tu Ternary Complex (Gdp And Kirromycin)
Bound To E. Coli 70s Ribosome
pdb|1QZD|A Chain A, Ef-Tu.Kirromycin Coordinates Fitted Into The Cryo-Em Map
Of Ef-Tu Ternary Complex (Gdp.Kirromycin) Bound 70s
Ribosome
pdb|2BVN|A Chain A, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|2BVN|B Chain B, E. Coli Ef-Tu:gdpnp In Complex With The Antibiotic
Enacyloxin Iia
pdb|3EP2|X Chain X, Model Of Phe-Trna(Phe) In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ3|X Chain X, Model Of Trna(Trp)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3EQ4|X Chain X, Model Of Trna(Leu)-Ef-Tu In The Ribosomal Pre-Accommodated
State Revealed By Cryo-Em
pdb|3FIH|Z Chain Z, Ternary Complex-Bound E.Coli 70s Ribosome. This Entry
Consists Of The 30s Subunit, Trnas And The Ternary
Complex.
pdb|3IZV|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding. This Entry Contains The
Small Subunit Of A Ribosome Programmed With A
Near-Cognate Codon, AT-Site Trna, P-Site Trna, Mrna And
Ef-Tu
pdb|3IZW|C Chain C, Structural Insights Into Cognate Vs. Near-Cognate
Discrimination During Decoding.This Entry Contains The
Small Subunit Of A Ribosome Programmed With A Cognate
Codon, AT-Site Trna, P-Site Trna, Mrna And Ef-Tu
Length = 393
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ +S + DTP + + +D PGH D+ + T DG
Sbjct: 49 IDNAPEEKARGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGA 101
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I I+ LNK D
Sbjct: 102 ILVVAATDGPMPQTREHILLGRQVGVPYI--IVFLNKCD 138
>pdb|1D8T|A Chain A, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|1D8T|B Chain B, Crystal Structure Of Elongation Factor, Tu (Ef-Tu-Mggdp)
Complexed With Ge2270a, A Thiazolyl Peptide Antibiotic
pdb|2FX3|A Chain A, Crystal Structure Determination Of E. Coli Elongation
Factor, Tu Using A Twinned Data Set
pdb|1ETU|A Chain A, Structural Details Of The Binding Of Guanosine Diphosphate
To Elongation Factor Tu From E. Coli As Studied By X-Ray
Crystallography
Length = 393
Score = 47.0 bits (110), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ +S + DTP + + +D PGH D+ + T DG
Sbjct: 49 IDNAPEEKARGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGA 101
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I I+ LNK D
Sbjct: 102 ILVVAATDGPMPQTREHILLGRQVGVPYI--IVFLNKCD 138
>pdb|1EFU|A Chain A, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
pdb|1EFU|C Chain C, Elongation Factor Complex Ef-TuEF-Ts From Escherichia Coli
Length = 385
Score = 46.6 bits (109), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ +S + DTP + + +D PGH D+ + T DG
Sbjct: 41 IDNAPEEKARGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGA 93
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I I+ LNK D
Sbjct: 94 ILVVAATDGPMPQTREHILLGRQVGVPYI--IVFLNKCD 130
>pdb|4AC9|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4AC9|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With Gdp
pdb|4ACA|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACA|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis, Apo Form
pdb|4ACB|A Chain A, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|B Chain B, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|C Chain C, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
pdb|4ACB|D Chain D, Crystal Structure Of Translation Elongation Factor Selb
From Methanococcus Maripaludis In Complex With The Gtp
Analogue Gppnhp
Length = 482
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/77 (36%), Positives = 39/77 (50%), Gaps = 7/77 (9%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
+S D + Q+RGIT+ S + +N Y I L+D+PGH D V +A +
Sbjct: 45 TSAHDKLPESQKRGITI-DIGFSAFKLEN------YRITLVDAPGHADLIRAVVSAADII 97
Query: 66 DGTIIVVDCVEGICAQT 82
D +IVVD EG QT
Sbjct: 98 DLALIVVDAKEGPKTQT 114
>pdb|3AGP|A Chain A, Structure Of Viral Polymerase Form I
pdb|3AGQ|A Chain A, Structure Of Viral Polymerase Form Ii
pdb|3AVT|A Chain A, Structure Of Viral Rna Polymerase Complex 1
pdb|3AVU|A Chain A, Structure Of Viral Rna Polymerase Complex 2
pdb|3AVV|A Chain A, Structure Of Viral Rna Polymerase Complex 3
pdb|3AVW|A Chain A, Structure Of Viral Rna Polymerase Complex 4
pdb|3AVX|A Chain A, Structure Of Viral Rna Polymerase Complex 5
pdb|3AVY|A Chain A, Structure Of Viral Rna Polymerase Complex 6
pdb|3VNU|A Chain A, Complex Structure Of Viral Rna Polymerase I
pdb|3VNV|A Chain A, Complex Structure Of Viral Rna Polymerase Ii
pdb|4FWT|A Chain A, Complex Structure Of Viral Rna Polymerase Form Iii
Length = 1289
Score = 45.1 bits (105), Expect = 2e-05, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ +S + DTP + + +D PGH D+ + T DG
Sbjct: 334 IDNAPEEKARGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGA 386
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I I+ LNK D
Sbjct: 387 ILVVAATDGPMPQTREHILLGRQVGVPYI--IVFLNKCD 423
>pdb|3AGJ|A Chain A, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|C Chain C, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|E Chain E, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
pdb|3AGJ|G Chain G, Crystal Structure Of Archaeal Pelota And Gtp-bound Ef1
Alpha Complex
Length = 437
Score = 45.1 bits (105), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D K+E+ERGIT+ + + K +Y+ +ID+PGH DF + T D
Sbjct: 59 LDKMKEERERGITIDLTFMKFETK-------KYVFTIIDAPGHRDFVKNMITGASQADAA 111
Query: 69 IIVVDCVEG 77
I+VV +G
Sbjct: 112 ILVVSARKG 120
>pdb|3VMF|A Chain A, Archaeal Protein
Length = 440
Score = 44.7 bits (104), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D K+E+ERGIT+ + + K +Y+ +ID+PGH DF + T D
Sbjct: 62 LDKMKEERERGITIDLTFMKFETK-------KYVFTIIDAPGHRDFVKNMITGASQADAA 114
Query: 69 IIVVDCVEG 77
I+VV +G
Sbjct: 115 ILVVSARKG 123
>pdb|1JNY|A Chain A, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1JNY|B Chain B, Crystal Structure Of Sulfolobus Solfataricus Elongation
Factor 1 Alpha In Complex With Gdp
pdb|1SKQ|A Chain A, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
pdb|1SKQ|B Chain B, The Crystal Structure Of Sulfolobus Solfataricus
Elongation Factor 1-Alpha In Complex With Magnesium And
Gdp
Length = 435
Score = 44.3 bits (103), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 50/106 (47%), Gaps = 19/106 (17%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D K+E+ERG+T+ + + K +Y +ID+PGH DF + T D
Sbjct: 59 LDRLKEERERGVTINLTFMRFETK-------KYFFTIIDAPGHRDFVKNMITGASQADAA 111
Query: 69 IIVVDC----------VEGICAQTQVALKQAWLEKIQPILVLNKID 104
I+VV VEG + + K L+++ I+ +NK+D
Sbjct: 112 ILVVSAKKGEYEAGMSVEGQTREHIILAKTMGLDQL--IVAVNKMD 155
>pdb|3MMP|A Chain A, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
pdb|3MMP|C Chain C, Structure Of The Qb Replicase, An Rna-Dependent Rna
Polymerase Consisting Of Viral And Host Proteins
Length = 678
Score = 44.3 bits (103), Expect = 3e-05, Method: Composition-based stats.
Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ +S + DTP + + +D PGH D+ + T DG
Sbjct: 334 IDNAPEEKARGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGA 386
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I I+ LNK D
Sbjct: 387 ILVVAATDGPMPQTREHILLGRQVGVPYI--IVFLNKCD 423
>pdb|2LKC|A Chain A, Free B.St If2-G2
pdb|2LKD|A Chain A, If2-G2 Gdp Complex
Length = 178
Score = 43.5 bits (101), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 47/96 (48%), Gaps = 8/96 (8%)
Query: 11 SRKDEQERG-ITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTI 69
S+ EQE G IT + + D K I +D+PGH F++ + ++ D I
Sbjct: 31 SKVTEQEAGGITQHIGAYQVTVNDKK-------ITFLDTPGHEAFTTMRARGAQVTDIVI 83
Query: 70 IVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
+VV +G+ QT A+ A + I+ +NK+D+
Sbjct: 84 LVVAADDGVMPQTVEAINHAKAANVPIIVAINKMDK 119
>pdb|1ZUN|B Chain B, Crystal Structure Of A Gtp-Regulated Atp Sulfurylase
Heterodimer From Pseudomonas Syringae
Length = 434
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/107 (29%), Positives = 51/107 (47%), Gaps = 13/107 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D + E+E+GIT I + Y+ +++I D+PGH ++ +T CD
Sbjct: 79 VDGLQAEREQGIT-----IDVAYRYFSTAKRKFII--ADTPGHEQYTRNXATGASTCDLA 131
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILV------LNKIDRLILE 109
II+VD G+ QT+ A L I+ I+V LN D + E
Sbjct: 132 IILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKXDLNGFDERVFE 178
>pdb|1EFM|A Chain A, Structure Of The Gdp Domain Of Ef-Tu And Location Of The
Amino Acids Homologous To Ras Oncogene Proteins
Length = 379
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 44/90 (48%), Gaps = 12/90 (13%)
Query: 18 RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77
RGIT+ +S + DTP + + +D PGH D+ + T DG I+VV +G
Sbjct: 44 RGITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVAATDG 96
Query: 78 ICAQTQVAL---KQAWLEKIQPILVLNKID 104
QT+ + +Q + I I+ LNK D
Sbjct: 97 PMPQTREHILLGRQVGVPYI--IVFLNKCD 124
>pdb|2WRN|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 1 Of 4).
pdb|2WRQ|Z Chain Z, The Crystal Structure Of The 70s Ribosome Bound To Ef-Tu
And Trna (Part 3 Of 4)
Length = 406
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 51 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 103
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 104 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 140
>pdb|1AIP|A Chain A, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|B Chain B, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|E Chain E, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
pdb|1AIP|F Chain F, Ef-Tu Ef-Ts Complex From Thermus Thermophilus
Length = 405
Score = 41.2 bits (95), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|2Y0Y|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y10|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome.
pdb|2Y12|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Near-Cognate Codon On The 70s Ribosome
pdb|2Y14|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y16|Z Chain Z, The Crystal Structure Of Ef-Tu And G24a-Trna-Trp Bound To
A Cognate Codon On The 70s Ribosome.
pdb|2Y18|Z Chain Z, The Crystal Structure Of Ef-Tu And Trp-Trna-Trp Bound To A
Cognate Codon On The 70s Ribosome
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|2C78|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Pulvomycin
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1EXM|A Chain A, Crystal Structure Of Thermus Thermophilus Elongation
Factor Tu (Ef-Tu) In Complex With The Gtp Analogue
Gppnhp.
pdb|1HA3|A Chain A, Elongation Factor Tu In Complex With Aurodox
pdb|1HA3|B Chain B, Elongation Factor Tu In Complex With Aurodox
pdb|3FIC|Z Chain Z, T. Thermophilus 70s Ribosome In Complex With Mrna, Trnas
And Ef- Tu.Gdp.Kirromycin Ternary Complex, Fitted To A
6.4 A Cryo-Em Map. This File Contains The 30s Subunit
And The Ligands
pdb|2XQD|Z Chain Z, The Structure Of Ef-Tu And Aminoacyl-Trna Bound To The 70s
Ribosome With A Gtp Analog
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|2Y0U|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
pdb|2Y0W|Z Chain Z, The Crystal Structure Of Ef-Tu And A9c-Trna-Trp Bound To A
Near-Cognate Codon On The 70s Ribosome
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|2C77|A Chain A, Ef-Tu Complexed With A Gtp Analog And The Antibiotic
Ge2270 A
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|4ABR|Z Chain Z, Complex Of Smpb, A Tmrna Fragment And Ef-Tu-Gdp-Kirromycin
With The 70s Ribosome
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1TTT|A Chain A, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|B Chain B, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TTT|C Chain C, Phe-Trna, Elongation Factor Ef-Tu:gdpnp Ternary Complex
pdb|1TUI|A Chain A, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|B Chain B, Intact Elongation Factor Tu In Complex With Gdp
pdb|1TUI|C Chain C, Intact Elongation Factor Tu In Complex With Gdp
pdb|1B23|P Chain P, E. Coli Cysteinyl-Trna And T. Aquaticus Elongation Factor
Ef-Tu:gtp Ternary Complex
pdb|1ZC8|Y Chain Y, Coordinates Of Tmrna, Smpb, Ef-tu And H44 Fitted Into
Cryo- Em Map Of The 70s Ribosome And Tmrna Complex
pdb|1OB5|A Chain A, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|C Chain C, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
pdb|1OB5|E Chain E, T. Aquaticus Elongation Factor Ef-Tu Complexed With The
Antibiotic Enacyloxin Iia, A Gtp Analog, And Phe-Trna
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1EFT|A Chain A, The Crystal Structure Of Elongation Factor Ef-Tu From
Thermus Aquaticus In The Gtp Conformation
Length = 405
Score = 41.2 bits (95), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 50/99 (50%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D +E+ RGIT+ ++ + Y+ K Y + +D PGH D+ + T DG
Sbjct: 50 IDKAPEERARGITINTAHVE--YETAK---RHY--SHVDCPGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ + +Q + I ++ +NK+D
Sbjct: 103 ILVVSAADGPMPQTREHILLARQVGVPYI--VVFMNKVD 139
>pdb|1G7S|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdp
pdb|1G7T|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Complexed With Gdpnp
Length = 594
Score = 40.4 bits (93), Expect = 4e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 33/62 (53%)
Query: 45 LIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
ID+PGH F++ L D I++VD EG QTQ AL + + ++ NKID
Sbjct: 74 FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKID 133
Query: 105 RL 106
R+
Sbjct: 134 RI 135
>pdb|2HCJ|B Chain B, "trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline"
Length = 335
Score = 40.0 bits (92), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 19 GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78
GIT+ +S + DTP + + +D PGH D+ + T DG I+VV +G
Sbjct: 1 GITINTSHVEY------DTPTRHYAH-VDXPGHADYVKNMITGAAQMDGAILVVAATDGP 53
Query: 79 CAQTQVAL---KQAWLEKIQPILVLNKID 104
QT+ + +Q + I I+ LNK D
Sbjct: 54 MPQTREHILLGRQVGVPYI--IVFLNKCD 80
>pdb|1MJ1|A Chain A, Fitting The Ternary Complex Of Ef-TuTRNAGTP AND RIBOSOMAL
PROTEINS Into A 13 A Cryo-Em Map Of The Coli 70s
Ribosome
Length = 405
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/97 (26%), Positives = 50/97 (51%), Gaps = 8/97 (8%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D ++E+ RGIT+ ++ + +T + + + +D GH D+ + T DG
Sbjct: 50 IDKAREERARGITINTAHVEY------ETAKRHYSH-VDCRGHADYIKNMITGAAQMDGA 102
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKID 104
I+VV +G QT+ + A ++ I+V +NK+D
Sbjct: 103 ILVVSAADGRMRQTREHILLARQVGVRYIVVFMNKVD 139
>pdb|1G7R|A Chain A, X-Ray Structure Of Translation Initiation Factor If2EIF5B
Length = 594
Score = 39.7 bits (91), Expect = 7e-04, Method: Composition-based stats.
Identities = 23/62 (37%), Positives = 32/62 (51%)
Query: 45 LIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
ID+PGH F++ L D I++VD EG QTQ AL + ++ NKID
Sbjct: 74 FIDTPGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRXYRTPFVVAANKID 133
Query: 105 RL 106
R+
Sbjct: 134 RI 135
>pdb|3IZY|P Chain P, Mammalian Mitochondrial Translation Initiation Factor 2
Length = 537
Score = 39.7 bits (91), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 36/68 (52%)
Query: 38 PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI 97
P I +D+PGH FS+ + ++ D I+VV +G+ QT +++ A + +
Sbjct: 49 PSGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAKDAHVPIV 108
Query: 98 LVLNKIDR 105
L +NK D+
Sbjct: 109 LAINKCDK 116
>pdb|2HDN|B Chain B, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|D Chain D, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|F Chain F, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|H Chain H, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|J Chain J, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
pdb|2HDN|L Chain L, Trypsin-Modified Elongation Factor Tu In Complex With
Tetracycline At 2.8 Angstrom Resolution
Length = 335
Score = 39.3 bits (90), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 43/89 (48%), Gaps = 12/89 (13%)
Query: 19 GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78
GIT+ +S + DTP + + +D PGH D+ + T DG I+VV +G
Sbjct: 1 GITINTSHVEY------DTPTRHYAH-VDCPGHADYVKNMITGAAQMDGAILVVAATDGP 53
Query: 79 CAQTQVAL---KQAWLEKIQPILVLNKID 104
QT+ + +Q + I I+ LNK D
Sbjct: 54 MPQTREHILLGRQVGVPYI--IVFLNKCD 80
>pdb|1F60|A Chain A, Crystal Structure Of The Yeast Elongation Factor Complex
Eef1a:eef1ba
pdb|1G7C|A Chain A, Yeast Eef1a:eef1ba In Complex With Gdpnp
pdb|1IJE|A Chain A, Nucleotide Exchange Intermediates In The Eef1a-eef1ba
Complex
pdb|1IJF|A Chain A, Nucleotide Exchange Mechanisms In The Eef1a-Eef1ba Complex
pdb|2B7B|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a And Gdp
pdb|2B7C|A Chain A, Yeast Guanine Nucleotide Exchange Factor Eef1balpha K205a
Mutant In Complex With Eef1a
Length = 458
Score = 38.9 bits (89), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 7/64 (10%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D K E+ERGIT+ I+L+ +TP+ Y + +ID+PGH DF + T D
Sbjct: 60 LDKLKAERERGITI---DIALW---KFETPK-YQVTVIDAPGHRDFIKNMITGTSQADCA 112
Query: 69 IIVV 72
I+++
Sbjct: 113 ILII 116
>pdb|1D2E|A Chain A, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|B Chain B, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|C Chain C, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
pdb|1D2E|D Chain D, Crystal Structure Of Mitochondrial Ef-Tu In Complex With
Gdp
Length = 397
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 48/99 (48%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ ++ + T + + D PGH D+ + T DG
Sbjct: 41 IDNAPEERARGITINAAHVEY------STAARHYAH-TDCPGHADYVKNMITGTAPLDGC 93
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ L +Q +E + ++ +NK D
Sbjct: 94 ILVVAANDGPMPQTREHLLLARQIGVEHV--VVYVNKAD 130
>pdb|1XB2|A Chain A, Crystal Structure Of Bos Taurus Mitochondrial Elongation
Factor TuTS COMPLEX
Length = 409
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ +E+ RGIT+ ++ + T + + D PGH D+ T DG
Sbjct: 52 IDNAPEERARGITINAAHVEY------STAARHYAH-TDCPGHADYVKNXITGTAPLDGC 104
Query: 69 IIVVDCVEGICAQTQVAL---KQAWLEKIQPILVLNKID 104
I+VV +G QT+ L +Q +E + ++ +NK D
Sbjct: 105 ILVVAANDGPXPQTREHLLLARQIGVEHV--VVYVNKAD 141
>pdb|3P26|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
pdb|3P26|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein
(Apo-Form), A Translational Gtpase Involved In Rna
Quality Control Pathways And Interacting With
Dom34PELOTA
Length = 483
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 9 MDSRKDEQERGITMK--SSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCD 66
MD +E+ERG+T+ +S S + + ++D+PGH DF + D
Sbjct: 86 MDQTNEERERGVTVSICTSHFSTHRAN---------FTIVDAPGHRDFVPNAIMGISQAD 136
Query: 67 GTIIVVDC 74
I+ VDC
Sbjct: 137 MAILCVDC 144
>pdb|3IZQ|1 Chain 1, Structure Of The Dom34-Hbs1-Gdpnp Complex Bound To A
Translating Ribosome
Length = 611
Score = 37.0 bits (84), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 11/68 (16%)
Query: 9 MDSRKDEQERGITMK--SSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCD 66
MD +E+ERG+T+ +S S + + ++D+PGH DF + D
Sbjct: 220 MDQTNEERERGVTVSICTSHFSTHRAN---------FTIVDAPGHRDFVPNAIMGISQAD 270
Query: 67 GTIIVVDC 74
I+ VDC
Sbjct: 271 MAILCVDC 278
>pdb|1ZO1|I Chain I, If2, If1, And Trna Fitted To Cryo-Em Data Of E. Coli 70s
Initiation Complex
Length = 501
Score = 36.2 bits (82), Expect = 0.008, Method: Composition-based stats.
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 39 EEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPIL 98
E +I +D+PGH F+S + + D ++VV +G+ QT A++ A ++ ++
Sbjct: 49 ENGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQVPVVV 108
Query: 99 VLNKIDR 105
+NKID+
Sbjct: 109 AVNKIDK 115
>pdb|1S0U|A Chain A, Eif2gamma Apo
Length = 408
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 56/128 (43%), Gaps = 34/128 (26%)
Query: 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDN--KDTPE-----------------EYL- 42
+ + D +E RGI SI L Y D + P+ E+L
Sbjct: 27 ALTGVWTDRHSEELRRGI-----SIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLR 81
Query: 43 -INLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ-----VALKQAWLEKIQP 96
++ +DSPGH + + + L DG I+V+ E C Q Q +AL+ ++KI
Sbjct: 82 RVSFVDSPGHETLMATMLSGASLMDGAILVIAANE-PCPQPQTKEHLMALEILGIDKI-- 138
Query: 97 ILVLNKID 104
I+V NKID
Sbjct: 139 IIVQNKID 146
>pdb|3MCA|A Chain A, Structure Of The Dom34-Hbs1 Complex And Implications For
Its Role In No-Go Decay
Length = 592
Score = 35.8 bits (81), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 14/87 (16%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D+ ++E+ RG+TM +S + + D K + + D+PGH DF S + D
Sbjct: 230 LDTTEEERARGVTMDVASTT-FESDKK------IYEIGDAPGHRDFISGMIAGASSADFA 282
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQ 95
++VVD +Q ++ +LE Q
Sbjct: 283 VLVVDS-------SQNNFERGFLENGQ 302
>pdb|3P27|A Chain A, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
pdb|3P27|B Chain B, Crystal Structure Of S. Cerevisiae Hbs1 Protein (Gdp-Bound
Form), A Translational Gtpase Involved In Rna Quality
Control Pathways And Interacting With Dom34PELOTA
Length = 483
Score = 35.4 bits (80), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 11/67 (16%)
Query: 10 DSRKDEQERGITMK--SSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
D +E+ERG+T+ +S S + + ++D+PGH DF + D
Sbjct: 87 DQTNEERERGVTVSICTSHFSTHRAN---------FTIVDAPGHRDFVPNAIXGISQADX 137
Query: 68 TIIVVDC 74
I+ VDC
Sbjct: 138 AILCVDC 144
>pdb|1WDT|A Chain A, Crystal Structure Of Ttk003000868 From Thermus
Thermophilus Hb8
pdb|2DY1|A Chain A, Crystal Structure Of Ef-G-2 From Thermus Thermophilus
Length = 665
Score = 34.3 bits (77), Expect = 0.030, Method: Composition-based stats.
Identities = 17/61 (27%), Positives = 32/61 (52%)
Query: 45 LIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
L+D+PG+ DF E+ A+ D ++ V G+ T+ A A + ++V+ K+D
Sbjct: 78 LLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLD 137
Query: 105 R 105
+
Sbjct: 138 K 138
>pdb|3EPH|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPH|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPJ|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPK|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|A Chain A, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
pdb|3EPL|B Chain B, Crystallographic Snapshots Of Eukaryotic
Dimethylallyltransferase Acting On Trna: Insight Into
Trna Recognition And Reaction Mechanism
Length = 409
Score = 31.6 bits (70), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 5/89 (5%)
Query: 9 MDSRKDEQ-ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
+D R D+ ERG + + YY NK TPE+ + G +F ++ + D
Sbjct: 205 LDDRVDDMLERGALQEIKQLYEYYSQNKFTPEQCENGVWQVIGFKEFLPWLTG--KTDDN 262
Query: 68 TIIVVDCVEGICAQT-QVALKQ-AWLEKI 94
T+ + DC+E + +T Q A +Q W++K+
Sbjct: 263 TVKLEDCIERMKTRTRQYAKRQVKWIKKM 291
>pdb|3CMG|A Chain A, Crystal Structure Of Putative Beta-Galactosidase From
Bacteroides Fragilis
Length = 667
Score = 31.2 bits (69), Expect = 0.26, Method: Composition-based stats.
Identities = 22/70 (31%), Positives = 40/70 (57%), Gaps = 8/70 (11%)
Query: 37 TPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT----IIVVDCVEGICAQTQ-VALKQAW- 90
+P YL+ + SP ++V+ + R DGT ++V D + IC +++ V+LKQ
Sbjct: 160 SPGVYLVQEVVSPQEAKVCAKVNLSNRAADGTAELQVLVTDGTKVICKESRNVSLKQGAD 219
Query: 91 -LEKIQPILV 99
LE++ P+L+
Sbjct: 220 ILEQL-PLLI 228
>pdb|1X54|A Chain A, Crystal Structure Of Asparaginyl-trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-adenylate
pdb|1X55|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii Complexed With
Asparaginyl-Adenylate Analogue
pdb|1X56|A Chain A, Crystal Structure Of Asparaginyl-Trna Synthetase From
Pyrococcus Horikoshii
Length = 434
Score = 31.2 bits (69), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 21/46 (45%)
Query: 78 ICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQ 123
I A + LK W E PILV ++ KL D Y +LSQ
Sbjct: 142 IMAAREWLLKDGWHEVFPPILVTGAVEGGATLFKLKYFDKYAYLSQ 187
>pdb|2D74|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer
pdb|2DCU|A Chain A, Crystal Structure Of Translation Initiation Factor
Aif2betagamma Heterodimer With Gdp
Length = 419
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 3 CMVSSYMDSRKDEQERGITMK------------------SSSISLYYKDNKDTPEEYLIN 44
+ + D+ +E RGIT+K +S I Y +T ++
Sbjct: 30 ALTGVWTDTHSEELRRGITIKIGFADAEIRRCSNCGRYSTSPICPYC--GHETEFIRRVS 87
Query: 45 LIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83
IDSPGH + + L DG I+V+ E C + Q
Sbjct: 88 FIDSPGHEALMTTMLAGASLMDGAILVIAANE-PCPRPQ 125
>pdb|2AHO|A Chain A, Structure Of The Archaeal Initiation Factor Eif2 Alpha-
Gamma Heterodimer From Sulfolobus Solfataricus Complexed
With Gdpnp
pdb|2PLF|A Chain A, The Structure Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Nucleotide-Free Form.
pdb|2QMU|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|2QN6|A Chain A, Structure Of An Archaeal Heterotrimeric Initiation Factor
2 Reveals A Nucleotide State Between The Gtp And The Gdp
States
pdb|3V11|A Chain A, Structure Of The Ternary Initiation Complex
Aif2:gdpnp:methionylated Initiator Trna
Length = 414
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 43 INLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC-AQTQ---VALKQAWLEKIQPIL 98
I+ ID+PGH + + + L DG I+VV E QT+ VAL ++ + I+
Sbjct: 88 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNL--II 145
Query: 99 VLNKIDRLILEMKLS 113
V NK+D + E LS
Sbjct: 146 VQNKVDVVSKEEALS 160
>pdb|2PMD|A Chain A, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|2PMD|B Chain B, The Structures Of Aif2gamma Subunit From The Archaeon
Sulfolobus Solfataricus In The Gdp-Bound Form.
pdb|3CW2|A Chain A, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|B Chain B, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|E Chain E, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3CW2|F Chain F, Crystal Structure Of The Intact Archaeal Translation
Initiation Factor 2 From Sulfolobus Solfataricus .
pdb|3I1F|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3I1F|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus In Complex With Gpp(Ch2)p
pdb|3P3M|A Chain A, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|B Chain B, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|C Chain C, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|D Chain D, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|E Chain E, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3P3M|F Chain F, Gamma-Subunit Of The Translation Initiation Factor 2 From
S. Solfataricus Complexed With Gtp
pdb|3QSY|A Chain A, Recognition Of The Methionylated Initiator Trna By The
Translation Initiation Factor 2 In Archaea
Length = 415
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 43 INLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC-AQTQ---VALKQAWLEKIQPIL 98
I+ ID+PGH + + + L DG I+VV E QT+ VAL ++ + I+
Sbjct: 89 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNL--II 146
Query: 99 VLNKIDRLILEMKLS 113
V NK+D + E LS
Sbjct: 147 VQNKVDVVSKEEALS 161
>pdb|3SJZ|A Chain A, The Structure Of Aif2gamma Subunit Delta 41-45 From
Archaeon Sulfolobus Solfataricus Complexed With Gdp And
Gdpnp
Length = 409
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 43 INLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC-AQTQ---VALKQAWLEKIQPIL 98
I+ ID+PGH + + + L DG I+VV E QT+ VAL ++ + I+
Sbjct: 83 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNL--II 140
Query: 99 VLNKIDRLILEMKLS 113
V NK+D + E LS
Sbjct: 141 VQNKVDVVSKEEALS 155
>pdb|3PEN|A Chain A, Structure Of Archaeal Initiation Factor Aif2gamma Subunit
Delta 37-47 From Sulfolobus Solfataricus In The
Gdp-Bound Form.
pdb|3SJY|A Chain A, The Structure Of Initiation Factor Aif2 Gamma Subunit
Delta 37-47 From Archaeon Sulfolobus Solfataricus
Complexed With Gdpcp
Length = 403
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 39/75 (52%), Gaps = 6/75 (8%)
Query: 43 INLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC-AQTQ---VALKQAWLEKIQPIL 98
I+ ID+PGH + + + L DG I+VV E QT+ VAL ++ + I+
Sbjct: 77 ISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNL--II 134
Query: 99 VLNKIDRLILEMKLS 113
V NK+D + E LS
Sbjct: 135 VQNKVDVVSKEEALS 149
>pdb|1R5B|A Chain A, Crystal Structure Analysis Of Sup35
pdb|1R5N|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gdp
pdb|1R5O|A Chain A, Crystal Structure Analysis Of Sup35 Complexed With Gmppnp
Length = 467
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/111 (24%), Positives = 51/111 (45%), Gaps = 21/111 (18%)
Query: 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRL 64
+S +DS +E+E+G T++ Y++ E +L+D+PGH + + +
Sbjct: 92 LSWALDSTSEEREKGKTVEVGRA--YFE-----TEHRRFSLLDAPGHKGYVTNMINGASQ 144
Query: 65 CDGTIIVVDCVEG-------ICAQTQVALKQAWLEKIQPI----LVLNKID 104
D ++V+ G QT+ + A L + Q I +V+NK+D
Sbjct: 145 ADIGVLVISARRGEFEAGFERGGQTR---EHAVLARTQGINHLVVVINKMD 192
>pdb|4DCS|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Sulfate Ion And Gdp
pdb|4DCT|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Half-Occupacy Gdp
pdb|4DCU|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With Gdp
pdb|4DCV|A Chain A, Crystal Structure Of B. Subtilis Enga In Complex With
Gmppcp
Length = 456
Score = 28.9 bits (63), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 12/87 (13%)
Query: 41 YLINLIDSPGHVDFSSE---------VSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL 91
Y NLID+ G +D E A+ D I +V+ EG+ A + K +
Sbjct: 71 YDFNLIDT-GGIDIGDEPFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR 129
Query: 92 EKIQPILVLNKIDRLILEMKLSPLDIY 118
K +L +NK+D EM+ + D Y
Sbjct: 130 TKKPVVLAVNKLDN--TEMRANIYDFY 154
>pdb|1KK3|A Chain A, Structure Of The Wild-Type Large Gamma Subunit Of
Initiation Factor Eif2 From Pyrococcus Abyssi Complexed
With Gdp-Mg2+
Length = 410
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 3 CMVSSYMDSRKDEQERGITMK------------------SSSISLYYKDNKDTPEEYLIN 44
+ + D+ +E RGIT+K +S + Y +T ++
Sbjct: 29 ALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC--GHETEFVRRVS 86
Query: 45 LIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83
ID+PGH + + L DG I+V+ E C + Q
Sbjct: 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANE-PCPRPQ 124
>pdb|1KJZ|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant
pdb|1KK1|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdpnp-Mg2+
pdb|1KK2|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi-G235d Mutant Complexed With
Gdp-Mg2+
Length = 410
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 39/99 (39%), Gaps = 21/99 (21%)
Query: 3 CMVSSYMDSRKDEQERGITMK------------------SSSISLYYKDNKDTPEEYLIN 44
+ + D+ +E RGIT+K +S + Y +T ++
Sbjct: 29 ALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC--GHETEFVRRVS 86
Query: 45 LIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83
ID+PGH + + L DG I+V+ E C + Q
Sbjct: 87 FIDAPGHEALMTTMLAGASLMDGAILVIAANE-PCPRPQ 124
>pdb|1KK0|A Chain A, Structure Of The Large Gamma Subunit Of Initiation Factor
Eif2 From Pyrococcus Abyssi
Length = 410
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/99 (23%), Positives = 38/99 (38%), Gaps = 21/99 (21%)
Query: 3 CMVSSYMDSRKDEQERGITMK------------------SSSISLYYKDNKDTPEEYLIN 44
+ + D+ +E RGIT+K +S + Y +T ++
Sbjct: 29 ALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYC--GHETEFVRRVS 86
Query: 45 LIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83
ID+PGH + L DG I+V+ E C + Q
Sbjct: 87 FIDAPGHEALXTTXLAGASLXDGAILVIAANE-PCPRPQ 124
>pdb|1X1R|A Chain A, Crystal Structure Of M-Ras In Complex With Gdp
pdb|1X1S|A Chain A, Crystal Structure Of M-ras In Complex With Gppnhp
Length = 178
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC-----VEGICAQTQVALKQAWLEKIQP 96
+++++D+ G +FS+ +R DG +IV E + Q+ L+ E
Sbjct: 62 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 121
Query: 97 ILVLNKIDRLIL 108
ILV NK+D + L
Sbjct: 122 ILVANKVDLMHL 133
>pdb|3KKP|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gppnhp
pdb|3KKQ|A Chain A, Crystal Structure Of M-Ras P40d In Complex With Gdp
Length = 183
Score = 28.1 bits (61), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC-----VEGICAQTQVALKQAWLEKIQP 96
+++++D+ G +FS+ +R DG +IV E + Q+ L+ E
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 97 ILVLNKIDRLIL 108
ILV NK+D + L
Sbjct: 127 ILVANKVDLMHL 138
>pdb|3PIR|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 1)
pdb|3PIT|A Chain A, Crystal Structure Of M-Rasd41e In Complex With Gppnhp
(Type 2)
Length = 183
Score = 28.1 bits (61), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 5/72 (6%)
Query: 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC-----VEGICAQTQVALKQAWLEKIQP 96
+++++D+ G +FS+ +R DG +IV E + Q+ L+ E
Sbjct: 67 ILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTDKASFEHVDRFHQLILRVKDRESFPM 126
Query: 97 ILVLNKIDRLIL 108
ILV NK+D + L
Sbjct: 127 ILVANKVDLMHL 138
>pdb|2Y6U|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form Ii)
pdb|2Y6V|A Chain A, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|B Chain B, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
pdb|2Y6V|C Chain C, Peroxisomal Alpha-Beta-Hydrolase Lpx1 (Yor084w) From
Saccharomyces Cerevisiae (Crystal Form I)
Length = 398
Score = 26.9 bits (58), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Query: 96 PILVLNKIDRLILEMKL-SPLDIYVHLSQLLEQVNAVMGELFASQVMDETAVKTTAQ 151
P LV+ +I+ I E L SPL H+ QL + AVM + +E VKTT Q
Sbjct: 330 PDLVIERINHHIHEFVLTSPLQ-SSHIPQLTLEERAVMFDRAFDSFKNEALVKTTKQ 385
>pdb|3J2K|7 Chain 7, Cryo-Em Structure Of The Mammalian Erf1-Erf3-Associated
Termination Complex
Length = 439
Score = 26.6 bits (57), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 35/73 (47%), Gaps = 7/73 (9%)
Query: 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRL 64
+S +D+ ++E+++G T++ Y++ K ++D+PGH F +
Sbjct: 66 LSWALDTNQEERDKGKTVEVGRA--YFETEKKH-----FTILDAPGHKSFVPNMIGGASQ 118
Query: 65 CDGTIIVVDCVEG 77
D ++V+ +G
Sbjct: 119 ADLAVLVISARKG 131
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.363
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,137,415
Number of Sequences: 62578
Number of extensions: 146812
Number of successful extensions: 515
Number of sequences better than 100.0: 102
Number of HSP's better than 100.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 398
Number of HSP's gapped (non-prelim): 102
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.7 bits)