Query psy2609
Match_columns 161
No_of_seqs 205 out of 1470
Neff 8.1
Searched_HMMs 46136
Date Fri Aug 16 20:34:57 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd01885 EF2 EF2 (for archaea a 99.9 2.9E-23 6.2E-28 160.8 15.3 135 3-137 32-169 (222)
2 COG0480 FusA Translation elong 99.9 1.4E-21 3.1E-26 171.3 9.4 128 3-136 40-173 (697)
3 KOG0467|consensus 99.9 4.4E-21 9.5E-26 165.9 11.0 130 2-138 40-169 (887)
4 cd01886 EF-G Elongation factor 99.8 5E-21 1.1E-25 152.2 7.5 125 5-136 35-161 (270)
5 PLN00116 translation elongatio 99.8 1.5E-19 3.3E-24 162.6 15.1 131 3-133 51-190 (843)
6 PTZ00416 elongation factor 2; 99.8 1.6E-19 3.6E-24 162.2 14.2 131 3-133 51-184 (836)
7 PF00009 GTP_EFTU: Elongation 99.8 1.1E-19 2.4E-24 136.8 10.2 96 7-109 41-138 (188)
8 PRK07560 elongation factor EF- 99.8 6.5E-19 1.4E-23 156.6 14.7 129 3-134 52-180 (731)
9 KOG0462|consensus 99.8 2E-19 4.4E-24 151.5 9.5 103 3-109 91-193 (650)
10 cd04167 Snu114p Snu114p subfam 99.8 4.1E-18 8.9E-23 130.7 15.5 128 4-133 36-163 (213)
11 cd01884 EF_Tu EF-Tu subfamily. 99.8 1.3E-18 2.8E-23 132.4 12.4 94 7-107 38-132 (195)
12 cd04168 TetM_like Tet(M)-like 99.8 2.4E-18 5.2E-23 134.5 13.7 97 6-109 36-132 (237)
13 TIGR01394 TypA_BipA GTP-bindin 99.8 2.4E-18 5.2E-23 149.6 13.9 96 6-108 36-131 (594)
14 cd04169 RF3 RF3 subfamily. Pe 99.8 6.5E-19 1.4E-23 139.9 9.1 98 5-109 42-139 (267)
15 cd01890 LepA LepA subfamily. 99.8 3E-18 6.5E-23 126.8 10.8 96 10-107 38-133 (179)
16 PRK12739 elongation factor G; 99.8 8.7E-19 1.9E-23 155.0 9.0 98 5-109 44-141 (691)
17 COG5256 TEF1 Translation elong 99.8 4E-18 8.7E-23 140.0 11.5 97 6-109 57-161 (428)
18 TIGR02034 CysN sulfate adenyly 99.8 5.8E-18 1.3E-22 141.6 12.5 95 6-107 52-147 (406)
19 PRK00741 prfC peptide chain re 99.8 1.6E-18 3.4E-23 148.9 9.1 99 4-109 49-147 (526)
20 COG4108 PrfC Peptide chain rel 99.8 2.9E-18 6.3E-23 141.5 10.2 109 4-123 51-159 (528)
21 PRK00007 elongation factor G; 99.8 1.7E-18 3.7E-23 153.1 9.4 98 5-109 46-143 (693)
22 cd01883 EF1_alpha Eukaryotic e 99.8 6.4E-18 1.4E-22 130.3 11.3 94 7-107 50-151 (219)
23 KOG0084|consensus 99.8 1.9E-18 4.2E-23 129.3 8.0 102 2-108 19-129 (205)
24 KOG0469|consensus 99.8 7.7E-19 1.7E-23 147.1 6.5 134 2-135 50-192 (842)
25 PLN00043 elongation factor 1-a 99.8 4.3E-18 9.4E-23 143.8 10.8 94 6-106 57-158 (447)
26 COG0481 LepA Membrane GTPase L 99.8 2.1E-18 4.6E-23 143.5 7.7 134 5-144 42-180 (603)
27 PRK05433 GTP-binding protein L 99.8 1.2E-17 2.6E-22 145.5 12.7 102 5-108 40-141 (600)
28 PTZ00141 elongation factor 1- 99.8 1.2E-17 2.5E-22 141.2 12.3 93 7-106 58-158 (446)
29 COG1217 TypA Predicted membran 99.7 6.7E-18 1.4E-22 140.3 10.3 96 7-109 41-136 (603)
30 KOG0468|consensus 99.7 1.5E-17 3.1E-22 142.8 12.4 127 5-133 163-289 (971)
31 TIGR01393 lepA GTP-binding pro 99.7 1.5E-17 3.2E-22 144.8 12.4 100 6-107 37-136 (595)
32 PRK12736 elongation factor Tu; 99.7 2.4E-17 5.1E-22 137.4 12.6 93 8-107 49-142 (394)
33 cd01891 TypA_BipA TypA (tyrosi 99.7 3.7E-17 8.1E-22 123.4 12.2 91 10-107 41-131 (194)
34 TIGR00490 aEF-2 translation el 99.7 3.4E-17 7.3E-22 145.4 13.9 126 4-132 52-177 (720)
35 TIGR00484 EF-G translation elo 99.7 5.8E-18 1.3E-22 149.7 8.5 96 7-109 48-143 (689)
36 cd04166 CysN_ATPS CysN_ATPS su 99.7 4.7E-17 1E-21 124.5 12.4 95 6-107 49-144 (208)
37 TIGR00485 EF-Tu translation el 99.7 3.6E-17 7.8E-22 136.3 12.7 95 7-108 48-143 (394)
38 cd04171 SelB SelB subfamily. 99.7 8.9E-18 1.9E-22 121.9 7.9 101 2-108 10-119 (164)
39 TIGR00503 prfC peptide chain r 99.7 6.7E-18 1.5E-22 145.1 8.4 96 7-109 53-148 (527)
40 CHL00071 tufA elongation facto 99.7 2.6E-17 5.5E-22 137.8 11.5 95 8-109 49-144 (409)
41 PRK05124 cysN sulfate adenylyl 99.7 3.6E-17 7.9E-22 139.2 12.3 94 7-107 80-174 (474)
42 PLN03127 Elongation factor Tu; 99.7 4.8E-17 1E-21 137.5 12.7 93 8-107 98-191 (447)
43 PLN03126 Elongation factor Tu; 99.7 5.9E-17 1.3E-21 137.8 12.8 95 7-108 117-212 (478)
44 KOG0465|consensus 99.7 2.3E-18 4.9E-23 146.5 4.1 126 4-136 74-201 (721)
45 PRK12317 elongation factor 1-a 99.7 5.5E-17 1.2E-21 136.3 11.4 95 6-107 56-153 (425)
46 PRK10512 selenocysteinyl-tRNA- 99.7 5.1E-17 1.1E-21 141.9 11.0 136 2-146 10-162 (614)
47 cd01889 SelB_euk SelB subfamil 99.7 5.5E-17 1.2E-21 122.3 9.6 107 2-108 10-135 (192)
48 PRK10218 GTP-binding protein; 99.7 7.4E-17 1.6E-21 140.5 11.6 96 7-109 41-136 (607)
49 TIGR00475 selB selenocysteine- 99.7 8.6E-17 1.9E-21 139.8 10.9 101 2-109 10-119 (581)
50 PRK12735 elongation factor Tu; 99.7 1.8E-16 3.8E-21 132.3 11.9 93 8-107 49-142 (396)
51 PRK00049 elongation factor Tu; 99.7 1.9E-16 4.1E-21 132.1 12.0 93 8-107 49-142 (396)
52 PTZ00327 eukaryotic translatio 99.7 1.5E-16 3.3E-21 134.6 11.0 140 3-145 45-228 (460)
53 cd01888 eIF2_gamma eIF2-gamma 99.7 7.3E-17 1.6E-21 123.1 8.2 106 3-108 11-152 (203)
54 PRK05306 infB translation init 99.7 4.3E-17 9.2E-22 145.1 7.9 100 2-108 300-404 (787)
55 COG1159 Era GTPase [General fu 99.7 2E-17 4.3E-22 131.2 4.9 136 2-144 16-166 (298)
56 TIGR03680 eif2g_arch translati 99.7 2.1E-16 4.5E-21 132.2 10.3 107 2-108 14-149 (406)
57 TIGR00483 EF-1_alpha translati 99.7 3.4E-16 7.3E-21 131.6 11.4 95 6-107 57-155 (426)
58 CHL00189 infB translation init 99.7 1.2E-16 2.5E-21 141.4 8.7 104 2-108 254-362 (742)
59 TIGR00487 IF-2 translation ini 99.7 1.4E-16 3E-21 138.4 7.8 100 2-107 97-201 (587)
60 KOG0464|consensus 99.7 5.7E-18 1.2E-22 139.6 -1.2 124 7-137 75-200 (753)
61 cd04170 EF-G_bact Elongation f 99.7 2.3E-15 5E-20 119.3 13.7 97 6-109 36-132 (268)
62 PRK13351 elongation factor G; 99.7 1.7E-15 3.7E-20 134.0 14.1 97 6-109 45-141 (687)
63 PRK05506 bifunctional sulfate 99.7 9.7E-16 2.1E-20 134.5 12.1 95 6-107 76-171 (632)
64 cd00881 GTP_translation_factor 99.6 1.8E-15 3.9E-20 112.1 11.2 87 14-107 42-128 (189)
65 cd04165 GTPBP1_like GTPBP1-lik 99.6 1E-15 2.2E-20 118.7 9.2 102 8-109 34-154 (224)
66 PRK12740 elongation factor G; 99.6 4.6E-15 9.9E-20 131.0 14.0 97 6-109 32-128 (668)
67 COG2895 CysN GTPases - Sulfate 99.6 7.6E-16 1.6E-20 124.6 7.7 95 8-109 60-155 (431)
68 KOG0092|consensus 99.6 5.1E-16 1.1E-20 116.0 5.9 102 1-107 14-124 (200)
69 KOG0094|consensus 99.6 1.9E-16 4.2E-21 118.6 2.7 103 2-109 32-144 (221)
70 COG0050 TufB GTPases - transla 99.6 2.8E-15 6.1E-20 118.9 8.9 94 9-109 50-144 (394)
71 COG0532 InfB Translation initi 99.6 3E-15 6.5E-20 126.4 8.6 103 3-109 16-123 (509)
72 COG1160 Predicted GTPases [Gen 99.6 2.3E-15 4.9E-20 125.3 7.7 132 2-144 13-159 (444)
73 TIGR00436 era GTP-binding prot 99.6 1.2E-15 2.6E-20 121.1 5.4 135 2-144 10-158 (270)
74 cd04120 Rab12 Rab12 subfamily. 99.6 3.6E-15 7.8E-20 113.9 7.8 101 2-107 10-119 (202)
75 PRK04000 translation initiatio 99.6 8.8E-15 1.9E-19 122.7 10.7 107 2-108 19-154 (411)
76 KOG0458|consensus 99.6 6.3E-15 1.4E-19 125.2 9.7 112 6-125 227-346 (603)
77 cd01864 Rab19 Rab19 subfamily. 99.6 1.5E-15 3.1E-20 111.2 4.9 102 2-108 13-123 (165)
78 cd01887 IF2_eIF5B IF2/eIF5B (i 99.6 1.5E-14 3.3E-19 105.5 9.4 102 2-107 10-116 (168)
79 cd01894 EngA1 EngA1 subfamily. 99.6 1.3E-14 2.8E-19 104.4 7.9 101 2-109 7-121 (157)
80 KOG1145|consensus 99.6 1.1E-14 2.3E-19 123.3 8.5 110 3-122 164-278 (683)
81 PRK15494 era GTPase Era; Provi 99.6 3.5E-15 7.5E-20 122.2 5.2 99 2-107 62-174 (339)
82 PRK03003 GTP-binding protein D 99.6 6.4E-15 1.4E-19 125.4 6.7 99 2-107 48-160 (472)
83 smart00176 RAN Ran (Ras-relate 99.6 1.2E-14 2.7E-19 110.8 7.4 101 2-107 5-113 (200)
84 KOG0078|consensus 99.5 1.1E-14 2.4E-19 110.2 7.0 101 2-107 22-131 (207)
85 KOG0093|consensus 99.5 6.3E-14 1.4E-18 101.1 9.3 101 3-108 32-141 (193)
86 cd04106 Rab23_lke Rab23-like s 99.5 9.9E-15 2.1E-19 106.0 5.0 104 2-108 10-121 (162)
87 KOG0087|consensus 99.5 5.4E-15 1.2E-19 112.0 3.3 100 3-107 25-133 (222)
88 TIGR03594 GTPase_EngA ribosome 99.5 3.6E-14 7.9E-19 118.9 8.7 101 2-109 9-123 (429)
89 cd01879 FeoB Ferrous iron tran 99.5 1E-14 2.2E-19 105.3 4.6 98 2-108 6-116 (158)
90 cd04107 Rab32_Rab38 Rab38/Rab3 99.5 1.5E-14 3.3E-19 109.7 5.3 102 2-107 10-124 (201)
91 KOG0080|consensus 99.5 8.3E-15 1.8E-19 107.0 3.7 100 3-107 22-131 (209)
92 TIGR00491 aIF-2 translation in 99.5 7.6E-14 1.7E-18 121.4 10.3 106 2-107 14-135 (590)
93 cd04116 Rab9 Rab9 subfamily. 99.5 1.3E-14 2.8E-19 106.6 4.5 100 2-106 15-127 (170)
94 KOG0079|consensus 99.5 3.8E-14 8.2E-19 102.3 6.6 102 3-109 19-128 (198)
95 cd04102 RabL3 RabL3 (Rab-like3 99.5 1.2E-13 2.7E-18 105.5 9.6 106 2-107 10-143 (202)
96 cd04160 Arfrp1 Arfrp1 subfamil 99.5 3.7E-14 7.9E-19 103.6 6.5 100 2-108 9-122 (167)
97 PRK00093 GTP-binding protein D 99.5 3E-14 6.6E-19 119.8 6.6 99 2-107 183-298 (435)
98 cd04145 M_R_Ras_like M-Ras/R-R 99.5 2.2E-14 4.7E-19 104.3 4.9 101 2-108 12-122 (164)
99 cd04121 Rab40 Rab40 subfamily. 99.5 6.8E-14 1.5E-18 105.8 7.7 101 2-107 16-124 (189)
100 TIGR03594 GTPase_EngA ribosome 99.5 1.6E-14 3.4E-19 121.2 4.7 98 2-106 182-296 (429)
101 cd04124 RabL2 RabL2 subfamily. 99.5 6.2E-14 1.3E-18 102.6 7.3 100 2-106 10-117 (161)
102 cd04176 Rap2 Rap2 subgroup. T 99.5 4E-14 8.7E-19 103.1 6.1 100 2-107 11-120 (163)
103 cd04162 Arl9_Arfrp2_like Arl9/ 99.5 7.4E-14 1.6E-18 102.8 7.3 98 2-108 9-114 (164)
104 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.5 4.1E-14 9E-19 103.5 5.9 102 2-108 12-122 (166)
105 COG2229 Predicted GTPase [Gene 99.5 8.8E-14 1.9E-18 103.4 7.6 84 20-109 53-137 (187)
106 cd01861 Rab6 Rab6 subfamily. 99.5 4E-14 8.7E-19 102.7 5.7 101 2-107 10-119 (161)
107 cd04122 Rab14 Rab14 subfamily. 99.5 7.7E-14 1.7E-18 102.3 7.1 102 2-108 12-122 (166)
108 KOG0460|consensus 99.5 1.9E-13 4.2E-18 110.3 9.8 94 9-109 92-186 (449)
109 PRK00093 GTP-binding protein D 99.5 1.1E-13 2.3E-18 116.5 8.8 99 2-107 11-123 (435)
110 cd04113 Rab4 Rab4 subfamily. 99.5 3.3E-14 7.1E-19 103.4 4.9 101 2-107 10-119 (161)
111 PRK00089 era GTPase Era; Revie 99.5 3.3E-14 7.2E-19 113.8 5.3 98 2-106 15-126 (292)
112 PRK03003 GTP-binding protein D 99.5 1.1E-13 2.4E-18 117.8 8.7 99 2-107 221-336 (472)
113 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.5 9.1E-14 2E-18 103.1 7.2 100 2-107 12-121 (172)
114 COG3276 SelB Selenocysteine-sp 99.5 3.2E-13 6.8E-18 112.0 11.0 94 9-109 25-119 (447)
115 cd00877 Ran Ran (Ras-related n 99.5 1.9E-14 4.2E-19 106.0 3.4 101 2-107 10-118 (166)
116 cd01867 Rab8_Rab10_Rab13_like 99.5 1.3E-13 2.8E-18 101.3 7.7 101 2-107 13-122 (167)
117 cd04112 Rab26 Rab26 subfamily. 99.5 6E-14 1.3E-18 105.6 6.0 101 2-107 10-120 (191)
118 cd01868 Rab11_like Rab11-like. 99.5 2.6E-14 5.6E-19 104.4 3.9 101 2-107 13-122 (165)
119 PRK09518 bifunctional cytidyla 99.5 5.4E-14 1.2E-18 125.0 6.6 99 2-107 285-397 (712)
120 cd04108 Rab36_Rab34 Rab34/Rab3 99.5 1.7E-13 3.8E-18 101.4 8.3 102 2-108 10-121 (170)
121 cd04127 Rab27A Rab27a subfamil 99.5 1.1E-13 2.3E-18 102.6 6.8 106 2-107 14-134 (180)
122 cd04157 Arl6 Arl6 subfamily. 99.5 1.9E-13 4E-18 99.2 7.6 100 2-108 9-119 (162)
123 COG5257 GCD11 Translation init 99.5 2.5E-13 5.5E-18 109.0 8.9 136 9-147 35-199 (415)
124 KOG0098|consensus 99.5 9.4E-14 2E-18 103.6 6.0 86 19-109 38-127 (216)
125 cd04115 Rab33B_Rab33A Rab33B/R 99.5 1.2E-13 2.6E-18 101.8 6.5 102 2-108 12-124 (170)
126 cd04175 Rap1 Rap1 subgroup. T 99.5 1.8E-13 3.9E-18 99.9 7.3 100 2-107 11-120 (164)
127 cd04136 Rap_like Rap-like subf 99.5 2E-13 4.4E-18 99.1 7.6 100 2-107 11-120 (163)
128 cd04110 Rab35 Rab35 subfamily. 99.5 4.8E-14 1E-18 106.9 4.2 101 2-107 16-124 (199)
129 cd01862 Rab7 Rab7 subfamily. 99.5 7.9E-14 1.7E-18 102.1 5.2 101 2-107 10-123 (172)
130 smart00175 RAB Rab subfamily o 99.5 4.8E-14 1E-18 102.3 3.9 101 2-107 10-119 (164)
131 cd04128 Spg1 Spg1p. Spg1p (se 99.5 2.5E-13 5.4E-18 101.9 7.9 99 2-106 10-117 (182)
132 PTZ00369 Ras-like protein; Pro 99.5 1.3E-13 2.9E-18 103.5 6.4 100 2-107 15-124 (189)
133 COG1160 Predicted GTPases [Gen 99.5 1.3E-13 2.7E-18 115.0 6.7 100 2-108 188-304 (444)
134 PLN03071 GTP-binding nuclear p 99.5 1.8E-13 3.9E-18 105.6 7.2 101 2-107 23-131 (219)
135 cd04161 Arl2l1_Arl13_like Arl2 99.5 2.5E-13 5.4E-18 100.2 7.6 100 2-108 9-115 (167)
136 PRK04004 translation initiatio 99.5 1.6E-13 3.5E-18 119.4 7.6 64 43-106 73-136 (586)
137 cd01866 Rab2 Rab2 subfamily. 99.5 1.5E-13 3.3E-18 101.1 6.4 101 2-107 14-123 (168)
138 smart00173 RAS Ras subfamily o 99.5 9.7E-14 2.1E-18 101.1 5.3 100 2-107 10-119 (164)
139 cd04114 Rab30 Rab30 subfamily. 99.4 4.7E-14 1E-18 103.2 3.5 101 2-107 17-126 (169)
140 PTZ00099 rab6; Provisional 99.4 2.5E-13 5.4E-18 101.6 7.5 93 10-107 3-99 (176)
141 cd04101 RabL4 RabL4 (Rab-like4 99.4 1.1E-13 2.5E-18 100.7 5.5 103 2-108 10-122 (164)
142 PLN03118 Rab family protein; P 99.4 9.4E-14 2E-18 106.2 5.3 101 2-107 24-134 (211)
143 cd04144 Ras2 Ras2 subfamily. 99.4 2E-13 4.4E-18 102.6 7.0 100 2-107 9-120 (190)
144 cd01871 Rac1_like Rac1-like su 99.4 1.7E-13 3.6E-18 102.0 6.5 100 2-107 11-119 (174)
145 cd01875 RhoG RhoG subfamily. 99.4 2E-13 4.3E-18 103.0 6.9 100 2-107 13-121 (191)
146 cd04138 H_N_K_Ras_like H-Ras/N 99.4 1.1E-13 2.4E-18 100.0 5.3 100 2-107 11-120 (162)
147 cd04119 RJL RJL (RabJ-Like) su 99.4 1.5E-13 3.3E-18 99.8 6.0 101 2-107 10-124 (168)
148 cd04151 Arl1 Arl1 subfamily. 99.4 2.2E-13 4.8E-18 99.0 6.8 99 2-107 9-114 (158)
149 cd01893 Miro1 Miro1 subfamily. 99.4 1.3E-13 2.8E-18 101.3 5.6 102 2-108 10-118 (166)
150 cd01865 Rab3 Rab3 subfamily. 99.4 2.8E-13 6.1E-18 99.3 7.1 102 2-108 11-121 (165)
151 cd01863 Rab18 Rab18 subfamily. 99.4 8.7E-14 1.9E-18 101.0 4.2 101 2-107 10-120 (161)
152 cd04147 Ras_dva Ras-dva subfam 99.4 1.6E-13 3.5E-18 103.9 5.6 102 2-108 9-119 (198)
153 cd04149 Arf6 Arf6 subfamily. 99.4 2.6E-13 5.6E-18 100.3 6.4 97 2-107 19-124 (168)
154 KOG0095|consensus 99.4 1.4E-12 3E-17 94.5 9.7 99 5-108 20-127 (213)
155 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.4 3.4E-13 7.5E-18 101.3 6.9 100 2-107 15-123 (182)
156 cd01874 Cdc42 Cdc42 subfamily. 99.4 2.9E-13 6.2E-18 100.8 6.4 101 2-108 11-120 (175)
157 cd04140 ARHI_like ARHI subfami 99.4 3.8E-13 8.2E-18 98.6 6.9 101 2-107 11-122 (165)
158 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.4 4.2E-13 9E-18 104.0 7.5 100 2-107 11-119 (222)
159 cd04131 Rnd Rnd subfamily. Th 99.4 2.8E-13 6.1E-18 101.3 6.3 100 2-107 11-119 (178)
160 cd04154 Arl2 Arl2 subfamily. 99.4 2.5E-13 5.3E-18 100.4 5.9 99 2-107 24-129 (173)
161 PLN03110 Rab GTPase; Provision 99.4 2E-13 4.3E-18 105.0 5.6 101 2-107 22-131 (216)
162 cd00878 Arf_Arl Arf (ADP-ribos 99.4 2.8E-13 6.2E-18 98.1 6.0 99 2-107 9-114 (158)
163 smart00178 SAR Sar1p-like memb 99.4 4.2E-13 9.1E-18 100.6 7.0 99 2-107 27-132 (184)
164 cd04150 Arf1_5_like Arf1-Arf5- 99.4 5.8E-13 1.3E-17 97.5 7.5 97 2-107 10-115 (159)
165 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.4 3.8E-13 8.3E-18 100.6 6.6 102 2-107 13-123 (183)
166 cd04133 Rop_like Rop subfamily 99.4 2.8E-13 6E-18 101.4 5.8 100 2-107 11-119 (176)
167 cd01898 Obg Obg subfamily. Th 99.4 1.6E-13 3.5E-18 100.4 4.2 103 1-109 9-130 (170)
168 PRK09518 bifunctional cytidyla 99.4 6E-13 1.3E-17 118.4 8.3 100 2-108 460-576 (712)
169 PRK14845 translation initiatio 99.4 6.6E-13 1.4E-17 121.1 8.5 105 2-106 471-591 (1049)
170 cd04132 Rho4_like Rho4-like su 99.4 4.9E-13 1.1E-17 99.8 6.5 102 2-107 10-119 (187)
171 PLN00223 ADP-ribosylation fact 99.4 7.4E-13 1.6E-17 99.2 7.4 98 2-108 27-133 (181)
172 cd04130 Wrch_1 Wrch-1 subfamil 99.4 9.3E-14 2E-18 102.7 2.5 100 2-107 10-118 (173)
173 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.4 8.5E-13 1.8E-17 102.9 7.8 100 2-107 23-131 (232)
174 cd01895 EngA2 EngA2 subfamily. 99.4 1.4E-12 3E-17 94.9 8.4 101 1-108 11-128 (174)
175 KOG0086|consensus 99.4 2.8E-13 6E-18 98.4 4.6 70 38-107 55-128 (214)
176 cd04109 Rab28 Rab28 subfamily. 99.4 8.8E-13 1.9E-17 101.2 7.7 102 2-107 10-123 (215)
177 cd04118 Rab24 Rab24 subfamily. 99.4 6.4E-13 1.4E-17 99.7 6.7 101 2-107 10-119 (193)
178 smart00177 ARF ARF-like small 99.4 7E-13 1.5E-17 98.6 6.8 99 2-107 23-128 (175)
179 PF02421 FeoB_N: Ferrous iron 99.4 2.2E-13 4.9E-18 100.1 4.0 99 2-109 10-121 (156)
180 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.4 8.1E-13 1.8E-17 98.0 6.9 99 2-107 25-130 (174)
181 cd04126 Rab20 Rab20 subfamily. 99.4 6.4E-13 1.4E-17 102.8 6.6 99 2-107 10-114 (220)
182 cd04143 Rhes_like Rhes_like su 99.4 7.3E-13 1.6E-17 104.2 6.8 100 2-107 10-127 (247)
183 cd01892 Miro2 Miro2 subfamily. 99.4 2.4E-13 5.3E-18 100.5 3.7 101 2-107 14-122 (169)
184 cd04158 ARD1 ARD1 subfamily. 99.4 1.2E-12 2.5E-17 96.6 7.0 99 2-107 9-114 (169)
185 cd01860 Rab5_related Rab5-rela 99.4 1.4E-12 3E-17 94.8 7.2 101 2-107 11-120 (163)
186 TIGR00450 mnmE_trmE_thdF tRNA 99.4 1.5E-12 3.2E-17 110.2 7.7 98 2-107 213-324 (442)
187 KOG0394|consensus 99.4 1.9E-13 4.2E-18 101.7 2.0 102 3-107 20-132 (210)
188 cd04146 RERG_RasL11_like RERG/ 99.4 1.5E-12 3.3E-17 95.1 6.7 101 2-108 9-121 (165)
189 PRK05291 trmE tRNA modificatio 99.4 1.2E-12 2.7E-17 110.9 6.7 97 2-107 225-335 (449)
190 cd04105 SR_beta Signal recogni 99.4 3.7E-12 8.1E-17 97.2 8.4 105 2-109 10-125 (203)
191 cd04177 RSR1 RSR1 subgroup. R 99.4 1.3E-12 2.8E-17 96.0 5.7 102 1-108 10-121 (168)
192 TIGR03598 GTPase_YsxC ribosome 99.3 5.7E-12 1.2E-16 93.9 9.1 97 2-108 28-144 (179)
193 cd04139 RalA_RalB RalA/RalB su 99.3 1.6E-12 3.4E-17 94.2 5.9 100 2-107 10-119 (164)
194 cd04111 Rab39 Rab39 subfamily. 99.3 1.7E-12 3.7E-17 99.6 6.4 102 2-107 12-123 (211)
195 cd04164 trmE TrmE (MnmE, ThdF, 99.3 2.7E-12 5.9E-17 92.0 7.0 99 2-109 11-123 (157)
196 cd00154 Rab Rab family. Rab G 99.3 3.4E-12 7.4E-17 91.2 7.5 100 2-106 10-118 (159)
197 smart00174 RHO Rho (Ras homolo 99.3 1.1E-12 2.4E-17 96.5 4.9 100 2-107 8-116 (174)
198 cd04142 RRP22 RRP22 subfamily. 99.3 3E-12 6.5E-17 97.4 7.4 102 2-108 10-131 (198)
199 cd04117 Rab15 Rab15 subfamily. 99.3 3.4E-12 7.4E-17 93.4 7.4 101 2-107 10-119 (161)
200 PTZ00133 ADP-ribosylation fact 99.3 2.4E-12 5.3E-17 96.4 6.6 97 2-107 27-132 (182)
201 cd00879 Sar1 Sar1 subfamily. 99.3 1.7E-12 3.8E-17 97.0 5.7 99 2-107 29-134 (190)
202 cd04156 ARLTS1 ARLTS1 subfamil 99.3 3.6E-12 7.8E-17 92.4 7.1 100 2-107 9-115 (160)
203 cd04123 Rab21 Rab21 subfamily. 99.3 4.3E-12 9.4E-17 91.6 7.4 101 2-107 10-119 (162)
204 cd04134 Rho3 Rho3 subfamily. 99.3 1.5E-12 3.4E-17 97.8 5.2 101 2-108 10-119 (189)
205 TIGR03156 GTP_HflX GTP-binding 99.3 2.9E-12 6.4E-17 105.5 7.2 99 2-107 199-315 (351)
206 cd01881 Obg_like The Obg-like 99.3 1E-12 2.3E-17 96.3 3.9 102 2-109 6-136 (176)
207 PRK04213 GTP-binding protein; 99.3 6.7E-12 1.5E-16 94.8 8.4 95 2-107 19-144 (201)
208 TIGR00437 feoB ferrous iron tr 99.3 9.6E-13 2.1E-17 114.8 4.0 98 2-108 4-114 (591)
209 cd04125 RabA_like RabA-like su 99.3 4.8E-12 1E-16 94.7 7.3 101 2-107 10-119 (188)
210 PLN00023 GTP-binding protein; 99.3 4.2E-12 9.1E-17 103.1 7.3 107 2-108 31-166 (334)
211 TIGR02528 EutP ethanolamine ut 99.3 5.8E-13 1.3E-17 95.1 1.8 89 2-107 10-102 (142)
212 cd04137 RheB Rheb (Ras Homolog 99.3 3.4E-12 7.3E-17 94.6 5.7 100 2-107 11-120 (180)
213 cd00157 Rho Rho (Ras homology) 99.3 2.1E-12 4.6E-17 94.3 4.3 102 2-109 10-120 (171)
214 KOG0097|consensus 99.3 1.9E-12 4.2E-17 93.0 3.5 102 1-107 20-130 (215)
215 PRK12298 obgE GTPase CgtA; Rev 99.3 3.3E-12 7.2E-17 106.5 5.4 101 2-108 169-290 (390)
216 cd04159 Arl10_like Arl10-like 99.3 1.1E-11 2.4E-16 88.6 7.4 98 2-108 9-116 (159)
217 cd04163 Era Era subfamily. Er 99.3 5.1E-12 1.1E-16 90.9 5.6 99 2-107 13-125 (168)
218 PLN03108 Rab family protein; P 99.3 7.7E-12 1.7E-16 95.7 6.9 101 2-107 16-125 (210)
219 KOG0088|consensus 99.3 3E-13 6.4E-18 98.8 -1.0 71 38-108 59-133 (218)
220 cd01897 NOG NOG1 is a nucleola 99.3 1E-11 2.3E-16 90.6 7.0 100 2-108 10-128 (168)
221 cd00880 Era_like Era (E. coli 99.3 5.5E-12 1.2E-16 89.5 5.3 102 2-109 6-120 (163)
222 PRK11058 GTPase HflX; Provisio 99.3 1E-11 2.2E-16 104.6 7.1 100 2-107 207-323 (426)
223 cd00876 Ras Ras family. The R 99.3 1.6E-11 3.5E-16 88.4 7.1 101 2-107 9-118 (160)
224 PRK12299 obgE GTPase CgtA; Rev 99.3 8.1E-12 1.8E-16 102.2 5.9 101 2-108 168-286 (335)
225 KOG0083|consensus 99.3 7.8E-12 1.7E-16 89.1 4.9 70 38-107 44-117 (192)
226 cd01878 HflX HflX subfamily. 99.3 1.8E-11 4E-16 92.7 7.2 101 2-109 51-169 (204)
227 cd04148 RGK RGK subfamily. Th 99.2 7.5E-12 1.6E-16 96.7 5.0 100 2-108 10-121 (221)
228 TIGR00231 small_GTP small GTP- 99.2 9.4E-12 2E-16 88.3 5.0 101 2-108 11-123 (161)
229 cd01873 RhoBTB RhoBTB subfamil 99.2 1.4E-11 3.1E-16 93.5 6.1 68 38-107 63-134 (195)
230 PRK09554 feoB ferrous iron tra 99.2 4.9E-12 1.1E-16 113.1 4.0 97 2-107 13-126 (772)
231 cd04135 Tc10 TC10 subfamily. 99.2 6.4E-12 1.4E-16 92.4 3.9 101 2-108 10-119 (174)
232 cd01870 RhoA_like RhoA-like su 99.2 1.2E-11 2.7E-16 90.9 5.5 101 2-107 11-119 (175)
233 PRK15467 ethanolamine utilizat 99.2 7.7E-12 1.7E-16 91.9 4.2 91 2-107 11-105 (158)
234 TIGR02729 Obg_CgtA Obg family 99.2 2.5E-11 5.5E-16 99.2 7.2 101 2-108 167-288 (329)
235 KOG0070|consensus 99.2 3.1E-11 6.7E-16 89.8 7.0 100 2-108 27-133 (181)
236 PRK00454 engB GTP-binding prot 99.2 2.3E-11 5E-16 91.2 6.2 97 2-108 34-150 (196)
237 cd00882 Ras_like_GTPase Ras-li 99.2 2.3E-11 5E-16 85.1 5.5 104 2-109 6-118 (157)
238 KOG0075|consensus 99.2 7E-11 1.5E-15 85.4 7.6 100 2-108 30-137 (186)
239 PF00071 Ras: Ras family; Int 99.2 5.7E-11 1.2E-15 86.2 7.3 101 2-107 9-118 (162)
240 cd04155 Arl3 Arl3 subfamily. 99.2 4.6E-11 9.9E-16 87.7 6.5 99 2-107 24-129 (173)
241 COG1100 GTPase SAR1 and relate 99.2 6.8E-11 1.5E-15 90.1 7.5 103 2-109 15-127 (219)
242 KOG0073|consensus 99.2 7.5E-11 1.6E-15 86.4 7.1 99 2-107 26-131 (185)
243 KOG0081|consensus 99.2 1.9E-10 4.1E-15 84.2 9.1 106 3-108 20-139 (219)
244 PTZ00132 GTP-binding nuclear p 99.2 9.8E-11 2.1E-15 89.6 7.7 101 2-107 19-127 (215)
245 PF01926 MMR_HSR1: 50S ribosom 99.2 5.9E-11 1.3E-15 82.4 5.8 93 2-102 9-116 (116)
246 COG0486 ThdF Predicted GTPase 99.2 7.7E-11 1.7E-15 98.7 7.4 99 2-108 227-339 (454)
247 COG0218 Predicted GTPase [Gene 99.1 1.9E-10 4.2E-15 87.1 7.8 98 2-109 34-151 (200)
248 COG5258 GTPBP1 GTPase [General 99.1 3.5E-10 7.6E-15 93.0 9.8 102 8-109 152-271 (527)
249 KOG0074|consensus 99.1 5.7E-11 1.2E-15 85.3 4.5 101 2-108 27-134 (185)
250 PRK09866 hypothetical protein; 99.1 8.1E-11 1.8E-15 102.4 6.1 113 40-153 229-357 (741)
251 PRK12297 obgE GTPase CgtA; Rev 99.1 1.1E-10 2.3E-15 98.3 6.4 99 2-106 168-287 (424)
252 KOG0395|consensus 99.1 2.5E-10 5.4E-15 87.0 7.9 92 10-107 26-122 (196)
253 KOG0461|consensus 99.1 2.3E-10 5.1E-15 93.0 7.9 103 7-109 34-138 (522)
254 PF08477 Miro: Miro-like prote 99.1 2.2E-11 4.8E-16 84.4 1.7 98 2-104 9-119 (119)
255 PF09439 SRPRB: Signal recogni 99.1 1.1E-10 2.4E-15 87.7 5.5 106 1-109 12-128 (181)
256 PF00025 Arf: ADP-ribosylation 99.1 2E-11 4.3E-16 91.0 0.8 100 2-108 24-130 (175)
257 KOG0459|consensus 99.1 1.7E-10 3.7E-15 95.1 5.8 114 6-126 129-251 (501)
258 PRK12296 obgE GTPase CgtA; Rev 99.1 4.8E-10 1E-14 95.9 8.2 100 2-108 169-299 (500)
259 KOG0091|consensus 99.1 2.6E-10 5.7E-15 83.8 5.4 101 3-107 19-130 (213)
260 cd01882 BMS1 Bms1. Bms1 is an 99.1 1.8E-09 3.8E-14 83.8 10.4 97 2-107 49-147 (225)
261 cd04103 Centaurin_gamma Centau 99.1 5.8E-10 1.2E-14 81.7 7.1 94 2-107 10-113 (158)
262 KOG1144|consensus 99.0 6.6E-10 1.4E-14 97.3 7.7 104 3-106 486-605 (1064)
263 cd04129 Rho2 Rho2 subfamily. 99.0 6.1E-10 1.3E-14 83.4 5.5 100 2-107 11-119 (187)
264 KOG0393|consensus 99.0 7E-10 1.5E-14 84.2 4.9 101 2-107 14-123 (198)
265 KOG0076|consensus 99.0 1.5E-09 3.3E-14 80.3 6.2 100 2-108 27-141 (197)
266 cd01876 YihA_EngB The YihA (En 99.0 6.1E-09 1.3E-13 75.0 9.0 97 2-108 9-125 (170)
267 PF10662 PduV-EutP: Ethanolami 98.9 2.8E-10 6.1E-15 82.4 1.1 88 2-107 11-103 (143)
268 cd01850 CDC_Septin CDC/Septin. 98.9 4.1E-09 9E-14 84.2 7.7 71 38-109 60-159 (276)
269 cd01896 DRG The developmentall 98.9 2.1E-09 4.6E-14 83.8 5.5 68 2-76 10-89 (233)
270 KOG0071|consensus 98.9 3.2E-09 6.9E-14 76.3 5.5 100 2-108 27-133 (180)
271 cd01852 AIG1 AIG1 (avrRpt2-ind 98.8 1.9E-08 4.2E-13 76.0 8.7 99 2-108 10-131 (196)
272 KOG1423|consensus 98.8 1.5E-08 3.2E-13 81.3 8.3 107 2-109 82-201 (379)
273 COG1084 Predicted GTPase [Gene 98.8 2.6E-08 5.7E-13 80.5 9.2 102 2-109 178-296 (346)
274 KOG0090|consensus 98.8 5.8E-08 1.3E-12 74.3 10.2 102 1-109 47-161 (238)
275 KOG1143|consensus 98.8 2.3E-08 4.9E-13 82.3 7.1 99 10-108 204-318 (591)
276 cd04104 p47_IIGP_like p47 (47- 98.8 2.9E-08 6.2E-13 75.3 7.3 65 41-107 52-121 (197)
277 KOG4252|consensus 98.7 4.4E-09 9.6E-14 78.5 1.9 72 38-109 66-140 (246)
278 KOG1191|consensus 98.7 3.4E-08 7.4E-13 83.4 6.3 100 2-108 278-404 (531)
279 PF04670 Gtr1_RagA: Gtr1/RagA 98.7 9.5E-08 2.1E-12 74.6 8.4 102 2-109 9-127 (232)
280 KOG0077|consensus 98.7 3.9E-08 8.4E-13 72.5 4.8 100 2-109 30-137 (193)
281 COG0370 FeoB Fe2+ transport sy 98.6 3.8E-08 8.2E-13 85.9 5.4 99 2-109 13-124 (653)
282 KOG0466|consensus 98.6 1.5E-07 3.3E-12 75.8 7.0 132 10-144 64-235 (466)
283 KOG0096|consensus 98.6 5E-08 1.1E-12 73.3 3.9 100 4-108 22-129 (216)
284 COG2262 HflX GTPases [General 98.6 7.3E-08 1.6E-12 79.9 5.2 132 2-144 202-350 (411)
285 KOG0463|consensus 98.5 6.7E-08 1.5E-12 79.7 3.7 123 11-133 171-315 (641)
286 PRK13768 GTPase; Provisional 98.5 4.5E-07 9.8E-12 71.6 7.7 68 42-109 98-178 (253)
287 smart00053 DYNc Dynamin, GTPas 98.5 1.4E-06 3E-11 68.4 9.5 70 40-109 124-208 (240)
288 cd01858 NGP_1 NGP-1. Autoanti 98.4 8.3E-08 1.8E-12 70.1 1.8 51 58-108 2-54 (157)
289 cd01899 Ygr210 Ygr210 subfamil 98.4 2.3E-07 5E-12 75.6 4.0 74 2-75 8-110 (318)
290 KOG1489|consensus 98.4 1.1E-06 2.3E-11 71.1 7.1 101 2-108 206-327 (366)
291 cd01857 HSR1_MMR1 HSR1/MMR1. 98.4 8.2E-07 1.8E-11 63.7 5.8 52 56-107 3-56 (141)
292 cd00066 G-alpha G protein alph 98.4 1.4E-06 3E-11 70.9 7.4 82 21-109 148-244 (317)
293 KOG0072|consensus 98.3 1.4E-06 3.1E-11 63.0 6.2 70 39-108 60-134 (182)
294 smart00275 G_alpha G protein a 98.3 4E-06 8.6E-11 69.0 8.3 82 21-109 171-267 (342)
295 KOG1673|consensus 98.3 2.4E-06 5.2E-11 62.6 6.2 99 3-106 31-137 (205)
296 cd01859 MJ1464 MJ1464. This f 98.2 4.1E-06 8.8E-11 60.9 5.9 54 54-107 2-55 (156)
297 KOG0052|consensus 98.2 6.8E-07 1.5E-11 73.8 1.5 97 6-109 54-158 (391)
298 TIGR02836 spore_IV_A stage IV 98.1 8.5E-06 1.9E-10 68.5 6.8 67 38-104 88-191 (492)
299 KOG2486|consensus 98.1 1.2E-05 2.5E-10 64.1 7.0 100 2-108 146-263 (320)
300 KOG1532|consensus 98.1 4.1E-06 9E-11 66.7 4.3 86 39-124 114-212 (366)
301 PF03029 ATP_bind_1: Conserved 98.1 1.3E-05 2.9E-10 62.7 7.1 67 42-108 92-171 (238)
302 cd01853 Toc34_like Toc34-like 98.1 4.6E-05 1E-09 60.1 9.9 100 2-108 41-164 (249)
303 TIGR03596 GTPase_YlqF ribosome 98.0 1.1E-05 2.4E-10 64.4 5.9 57 49-107 5-62 (276)
304 cd01856 YlqF YlqF. Proteins o 98.0 1.4E-05 3.1E-10 59.1 5.3 57 49-107 3-60 (171)
305 cd01849 YlqF_related_GTPase Yl 97.9 4.1E-06 8.9E-11 61.0 1.6 77 66-143 1-78 (155)
306 COG1163 DRG Predicted GTPase [ 97.9 1E-05 2.2E-10 65.7 3.0 68 2-76 73-152 (365)
307 PF00350 Dynamin_N: Dynamin fa 97.9 3.6E-05 7.7E-10 56.1 5.5 64 40-103 100-168 (168)
308 PRK09563 rbgA GTPase YlqF; Rev 97.8 2.6E-05 5.6E-10 62.6 5.0 57 49-107 8-65 (287)
309 cd01855 YqeH YqeH. YqeH is an 97.8 2.2E-05 4.9E-10 58.8 4.3 57 49-107 19-75 (190)
310 KOG4423|consensus 97.8 6.8E-07 1.5E-11 67.2 -4.2 92 13-108 51-150 (229)
311 cd04178 Nucleostemin_like Nucl 97.8 2.6E-05 5.7E-10 58.2 4.0 44 66-109 1-46 (172)
312 cd03110 Fer4_NifH_child This p 97.7 0.00018 4E-09 53.2 7.8 66 39-106 91-156 (179)
313 TIGR00991 3a0901s02IAP34 GTP-b 97.7 0.00043 9.4E-09 56.3 9.9 98 2-106 48-166 (313)
314 TIGR00157 ribosome small subun 97.7 3.7E-05 8E-10 60.4 3.3 56 52-107 24-81 (245)
315 KOG3883|consensus 97.7 0.00014 3.1E-09 53.3 6.0 70 38-107 57-132 (198)
316 KOG1707|consensus 97.7 0.00012 2.6E-09 63.3 6.5 104 3-109 20-131 (625)
317 cd01900 YchF YchF subfamily. 97.6 6.1E-05 1.3E-09 60.3 4.1 74 2-75 8-103 (274)
318 COG3596 Predicted GTPase [Gene 97.6 0.00018 3.8E-09 57.4 6.5 69 40-108 86-163 (296)
319 COG4917 EutP Ethanolamine util 97.6 2.9E-05 6.3E-10 55.0 1.8 90 2-107 11-104 (148)
320 COG0536 Obg Predicted GTPase [ 97.6 0.00049 1.1E-08 56.4 8.8 100 2-107 169-289 (369)
321 PRK12289 GTPase RsgA; Reviewed 97.6 3.1E-05 6.6E-10 64.1 1.8 53 56-108 81-135 (352)
322 KOG0082|consensus 97.5 0.00086 1.9E-08 55.4 9.0 84 19-109 180-278 (354)
323 PTZ00258 GTP-binding protein; 97.5 0.00014 3E-09 60.9 4.2 74 2-75 31-126 (390)
324 KOG1954|consensus 97.5 0.00083 1.8E-08 55.8 8.5 68 42-109 148-227 (532)
325 PRK09601 GTP-binding protein Y 97.3 0.00025 5.4E-09 58.9 4.3 74 2-75 12-107 (364)
326 PF00735 Septin: Septin; Inte 97.3 0.00088 1.9E-08 53.8 7.1 71 38-109 60-158 (281)
327 KOG3886|consensus 97.3 0.001 2.2E-08 52.1 6.7 89 15-109 33-132 (295)
328 PF05049 IIGP: Interferon-indu 97.3 0.00055 1.2E-08 57.0 5.7 96 3-105 46-153 (376)
329 PF06858 NOG1: Nucleolar GTP-b 97.3 0.0016 3.4E-08 39.9 6.1 48 57-104 5-58 (58)
330 cd01854 YjeQ_engC YjeQ/EngC. 97.3 0.00012 2.6E-09 58.8 1.4 47 62-108 76-124 (287)
331 PF00503 G-alpha: G-protein al 97.2 0.00051 1.1E-08 57.4 5.2 84 20-110 221-320 (389)
332 PRK00098 GTPase RsgA; Reviewed 97.2 0.00017 3.7E-09 58.3 2.1 45 62-106 78-124 (298)
333 PF04548 AIG1: AIG1 family; I 97.2 0.006 1.3E-07 46.7 10.2 99 3-109 11-132 (212)
334 PRK09602 translation-associate 97.2 0.00045 9.7E-09 58.1 4.2 74 2-75 11-113 (396)
335 TIGR03597 GTPase_YqeH ribosome 97.1 0.00063 1.4E-08 56.4 4.8 56 51-108 50-105 (360)
336 cd02038 FleN-like FleN is a me 97.1 0.0063 1.4E-07 43.5 8.7 64 41-106 45-110 (139)
337 KOG1490|consensus 97.0 0.0025 5.4E-08 54.7 7.2 70 40-109 214-297 (620)
338 KOG0099|consensus 97.0 0.0048 1E-07 49.3 8.0 70 40-109 201-285 (379)
339 PRK09435 membrane ATPase/prote 96.8 0.0016 3.4E-08 53.6 4.1 62 40-108 148-209 (332)
340 TIGR01007 eps_fam capsular exo 96.8 0.0081 1.7E-07 45.4 7.6 67 40-107 127-194 (204)
341 cd02036 MinD Bacterial cell di 96.7 0.01 2.3E-07 43.3 7.3 63 42-106 64-127 (179)
342 COG3640 CooC CO dehydrogenase 96.6 0.0028 6E-08 49.6 4.2 64 40-106 133-198 (255)
343 COG5019 CDC3 Septin family pro 96.6 0.018 3.9E-07 47.7 9.0 71 38-109 79-178 (373)
344 TIGR00750 lao LAO/AO transport 96.6 0.0095 2.1E-07 48.1 7.2 62 40-108 126-187 (300)
345 KOG2484|consensus 96.5 0.0083 1.8E-07 50.2 6.5 57 53-109 135-193 (435)
346 PRK01889 GTPase RsgA; Reviewed 96.5 0.0061 1.3E-07 50.5 5.6 46 62-107 110-156 (356)
347 PRK12288 GTPase RsgA; Reviewed 96.5 0.003 6.6E-08 52.2 3.8 45 63-107 119-164 (347)
348 COG5192 BMS1 GTP-binding prote 96.5 0.016 3.5E-07 50.8 8.0 99 3-109 80-179 (1077)
349 cd03114 ArgK-like The function 96.4 0.013 2.8E-07 42.5 6.3 58 40-104 91-148 (148)
350 TIGR00993 3a0901s04IAP86 chlor 96.3 0.022 4.8E-07 50.9 8.2 99 2-107 128-250 (763)
351 cd02037 MRP-like MRP (Multiple 96.2 0.023 4.9E-07 41.7 6.8 66 39-106 66-134 (169)
352 cd03115 SRP The signal recogni 96.2 0.04 8.7E-07 40.4 8.1 66 40-107 82-153 (173)
353 KOG2655|consensus 96.1 0.035 7.6E-07 46.1 8.1 71 38-109 76-174 (366)
354 cd03112 CobW_like The function 96.0 0.017 3.8E-07 42.2 5.4 63 40-105 86-158 (158)
355 TIGR01969 minD_arch cell divis 96.0 0.035 7.6E-07 42.9 7.4 65 40-106 108-173 (251)
356 cd03111 CpaE_like This protein 96.0 0.031 6.8E-07 38.0 6.2 59 42-102 44-106 (106)
357 KOG2485|consensus 96.0 0.013 2.8E-07 47.6 4.8 66 41-108 22-88 (335)
358 PHA02518 ParA-like protein; Pr 95.9 0.088 1.9E-06 39.5 9.1 64 40-105 76-145 (211)
359 KOG0447|consensus 95.9 0.065 1.4E-06 47.0 8.9 86 17-109 392-495 (980)
360 COG1149 MinD superfamily P-loo 95.8 0.031 6.6E-07 44.7 6.3 64 41-106 164-227 (284)
361 TIGR01425 SRP54_euk signal rec 95.8 0.058 1.3E-06 45.9 8.1 65 40-106 182-252 (429)
362 COG1161 Predicted GTPases [Gen 95.7 0.016 3.5E-07 47.4 4.4 63 45-109 14-77 (322)
363 TIGR00064 ftsY signal recognit 95.6 0.098 2.1E-06 41.8 8.6 66 39-107 153-231 (272)
364 KOG0448|consensus 95.6 0.028 6.2E-07 49.9 5.9 67 42-109 207-277 (749)
365 PRK14722 flhF flagellar biosyn 95.5 0.053 1.1E-06 45.3 7.0 67 40-106 215-294 (374)
366 PRK13796 GTPase YqeH; Provisio 95.4 0.033 7.2E-07 46.3 5.2 52 53-107 58-110 (365)
367 TIGR03029 EpsG chain length de 95.2 0.095 2.1E-06 41.4 7.3 62 40-102 212-274 (274)
368 cd02035 ArsA ArsA ATPase funct 95.1 0.22 4.7E-06 38.1 8.7 66 41-106 114-183 (217)
369 CHL00175 minD septum-site dete 95.1 0.083 1.8E-06 41.9 6.5 64 40-105 126-190 (281)
370 TIGR01968 minD_bact septum sit 95.0 0.093 2E-06 40.6 6.5 64 40-105 111-175 (261)
371 KOG2423|consensus 94.8 0.069 1.5E-06 45.1 5.4 48 60-107 209-258 (572)
372 TIGR03348 VI_IcmF type VI secr 94.7 0.054 1.2E-06 51.5 5.2 65 42-106 162-256 (1169)
373 PRK13849 putative crown gall t 94.7 0.14 3.1E-06 39.8 6.8 64 39-104 82-151 (231)
374 KOG1547|consensus 94.5 0.55 1.2E-05 37.3 9.6 71 38-109 101-200 (336)
375 PRK10416 signal recognition pa 94.5 0.26 5.7E-06 40.3 8.3 65 39-106 195-272 (318)
376 KOG1424|consensus 94.5 0.082 1.8E-06 45.7 5.3 54 56-109 166-221 (562)
377 PF00448 SRP54: SRP54-type pro 94.2 0.21 4.6E-06 37.9 6.6 66 40-107 83-154 (196)
378 PRK00771 signal recognition pa 94.1 0.26 5.6E-06 42.1 7.7 62 41-105 176-244 (437)
379 TIGR00073 hypB hydrogenase acc 94.1 0.015 3.2E-07 44.3 0.1 60 41-107 103-162 (207)
380 TIGR00092 GTP-binding protein 93.9 0.067 1.4E-06 44.6 3.6 74 2-75 12-108 (368)
381 TIGR00959 ffh signal recogniti 93.9 0.25 5.5E-06 42.1 7.1 63 40-105 182-251 (428)
382 PF01656 CbiA: CobQ/CobB/MinD/ 93.7 0.11 2.4E-06 38.2 4.3 64 41-106 95-161 (195)
383 PRK14974 cell division protein 93.6 0.42 9E-06 39.5 7.7 65 40-107 222-293 (336)
384 TIGR03371 cellulose_yhjQ cellu 93.4 0.31 6.8E-06 37.5 6.5 64 41-106 115-181 (246)
385 cd02032 Bchl_like This family 93.3 0.3 6.5E-06 38.4 6.3 65 40-105 115-184 (267)
386 KOG0410|consensus 93.3 0.13 2.8E-06 42.4 4.2 101 2-108 188-309 (410)
387 cd01851 GBP Guanylate-binding 93.3 0.088 1.9E-06 40.8 3.2 74 2-75 17-102 (224)
388 PRK10867 signal recognition pa 93.2 0.5 1.1E-05 40.3 7.8 63 40-105 183-252 (433)
389 TIGR03018 pepcterm_TyrKin exop 93.1 0.53 1.1E-05 35.7 7.2 57 42-101 150-207 (207)
390 PRK09563 rbgA GTPase YlqF; Rev 92.8 0.03 6.6E-07 44.9 0.0 41 2-52 131-177 (287)
391 PRK12727 flagellar biosynthesi 92.8 0.51 1.1E-05 41.4 7.4 65 40-106 428-497 (559)
392 PRK11670 antiporter inner memb 92.7 0.4 8.6E-06 40.0 6.4 67 40-106 215-282 (369)
393 COG0541 Ffh Signal recognition 92.7 0.57 1.2E-05 39.9 7.3 63 40-105 182-251 (451)
394 PRK10818 cell division inhibit 92.6 0.57 1.2E-05 36.7 7.0 65 40-106 113-186 (270)
395 TIGR01005 eps_transp_fam exopo 92.5 0.45 9.8E-06 43.1 7.0 66 40-106 655-721 (754)
396 TIGR03596 GTPase_YlqF ribosome 92.5 0.062 1.3E-06 42.8 1.3 40 2-51 128-173 (276)
397 KOG1707|consensus 92.3 0.18 3.8E-06 44.3 4.0 47 63-109 494-542 (625)
398 TIGR03815 CpaE_hom_Actino heli 92.1 0.46 1E-05 38.5 6.0 63 40-104 204-266 (322)
399 PRK09841 cryptic autophosphory 92.0 0.7 1.5E-05 41.9 7.6 65 40-105 640-705 (726)
400 PRK13185 chlL protochlorophyll 92.0 0.4 8.7E-06 37.7 5.5 65 40-105 117-186 (270)
401 COG1162 Predicted GTPases [Gen 91.9 0.72 1.6E-05 37.5 6.7 53 57-109 72-126 (301)
402 PRK11519 tyrosine kinase; Prov 91.7 0.89 1.9E-05 41.2 7.9 65 40-105 635-700 (719)
403 PRK13796 GTPase YqeH; Provisio 91.2 0.059 1.3E-06 44.8 -0.1 41 2-52 170-221 (365)
404 COG0455 flhG Antiactivator of 91.2 1.8 3.9E-05 34.4 8.3 82 41-129 113-197 (262)
405 cd02042 ParA ParA and ParB of 91.0 0.99 2.2E-05 29.9 5.9 35 40-76 39-73 (104)
406 KOG3887|consensus 91.0 0.63 1.4E-05 37.1 5.4 70 41-110 75-152 (347)
407 COG1161 Predicted GTPases [Gen 90.8 0.069 1.5E-06 43.7 -0.1 40 2-51 142-187 (322)
408 cd01857 HSR1_MMR1 HSR1/MMR1. 90.4 0.061 1.3E-06 38.2 -0.6 10 42-51 129-138 (141)
409 KOG0780|consensus 90.1 1.6 3.5E-05 37.0 7.3 40 38-77 181-226 (483)
410 TIGR01281 DPOR_bchL light-inde 89.6 0.8 1.7E-05 35.9 5.1 65 40-105 115-184 (268)
411 TIGR03597 GTPase_YqeH ribosome 89.4 0.11 2.5E-06 43.0 0.1 42 2-53 164-216 (360)
412 PRK10037 cell division protein 89.3 1.5 3.3E-05 34.1 6.5 58 39-104 116-174 (250)
413 KOG1534|consensus 89.1 0.64 1.4E-05 36.3 4.0 67 41-108 98-179 (273)
414 COG4963 CpaE Flp pilus assembl 89.1 1.8 3.8E-05 36.2 6.9 108 40-158 217-327 (366)
415 TIGR00101 ureG urease accessor 88.9 0.14 3.1E-06 38.9 0.3 59 40-107 91-151 (199)
416 PRK06731 flhF flagellar biosyn 88.8 1.9 4.2E-05 34.4 6.8 65 40-107 154-225 (270)
417 CHL00072 chlL photochlorophyll 88.6 1.1 2.4E-05 36.0 5.4 65 40-105 115-184 (290)
418 cd02117 NifH_like This family 88.3 0.7 1.5E-05 35.0 3.9 66 40-105 116-187 (212)
419 cd00550 ArsA_ATPase Oxyanion-t 87.1 3.1 6.8E-05 32.6 7.0 67 40-106 124-202 (254)
420 PF07015 VirC1: VirC1 protein; 87.1 4 8.7E-05 32.0 7.4 64 40-105 83-152 (231)
421 PRK12726 flagellar biosynthesi 86.2 4.1 9E-05 34.5 7.5 63 40-106 285-355 (407)
422 PRK12288 GTPase RsgA; Reviewed 85.6 0.26 5.6E-06 40.8 0.1 15 2-16 215-229 (347)
423 TIGR00157 ribosome small subun 85.3 0.34 7.5E-06 38.0 0.7 15 2-16 130-144 (245)
424 PF10609 ParA: ParA/MinD ATPas 85.1 6 0.00013 25.8 6.4 60 43-103 3-63 (81)
425 PRK12724 flagellar biosynthesi 85.0 3.9 8.5E-05 35.0 6.8 64 40-106 299-372 (432)
426 PRK14723 flhF flagellar biosyn 84.6 3.1 6.8E-05 38.1 6.5 66 40-106 263-336 (767)
427 TIGR00347 bioD dethiobiotin sy 84.3 3.7 8.1E-05 29.6 5.8 12 89-100 125-136 (166)
428 PRK11889 flhF flagellar biosyn 84.2 3.7 8.1E-05 35.0 6.3 65 40-107 320-391 (436)
429 PRK12723 flagellar biosynthesi 84.0 7.5 0.00016 32.8 8.1 64 39-106 253-325 (388)
430 TIGR02475 CobW cobalamin biosy 84.0 7.9 0.00017 31.9 8.2 37 40-76 92-135 (341)
431 PRK13869 plasmid-partitioning 83.9 3.4 7.3E-05 34.9 6.1 34 40-75 251-284 (405)
432 COG0523 Putative GTPases (G3E 83.9 5.4 0.00012 32.8 7.1 66 41-109 85-161 (323)
433 COG0489 Mrp ATPases involved i 83.7 6 0.00013 31.4 7.1 67 40-107 166-233 (265)
434 KOG1533|consensus 83.6 7.3 0.00016 31.0 7.3 69 40-108 96-178 (290)
435 PF09140 MipZ: ATPase MipZ; I 82.8 8.7 0.00019 30.6 7.5 93 40-137 98-213 (261)
436 PRK13705 plasmid-partitioning 82.7 4.7 0.0001 33.9 6.4 34 40-75 234-267 (388)
437 KOG3022|consensus 82.6 1.6 3.4E-05 35.3 3.3 63 40-102 156-220 (300)
438 PRK10463 hydrogenase nickel in 82.3 0.27 5.9E-06 39.8 -1.1 51 93-143 230-282 (290)
439 PF03193 DUF258: Protein of un 82.1 0.17 3.7E-06 37.4 -2.1 14 42-55 88-101 (161)
440 PRK05703 flhF flagellar biosyn 82.0 7.7 0.00017 33.0 7.6 64 40-106 299-370 (424)
441 cd02040 NifH NifH gene encodes 80.9 2.2 4.8E-05 33.2 3.7 36 40-75 116-152 (270)
442 TIGR03453 partition_RepA plasm 80.5 5.4 0.00012 33.3 6.1 34 40-75 234-267 (387)
443 COG0552 FtsY Signal recognitio 80.4 8 0.00017 32.0 6.7 64 39-105 220-296 (340)
444 PRK12289 GTPase RsgA; Reviewed 80.3 0.6 1.3E-05 38.8 0.3 14 2-15 182-195 (352)
445 PF14331 ImcF-related_N: ImcF- 79.8 2 4.4E-05 34.1 3.1 43 65-107 26-83 (266)
446 smart00010 small_GTPase Small 79.6 3.3 7.1E-05 27.7 3.8 52 56-107 38-91 (124)
447 COG1162 Predicted GTPases [Gen 79.5 0.59 1.3E-05 38.0 -0.0 14 3-16 175-188 (301)
448 COG3523 IcmF Type VI protein s 79.3 5 0.00011 38.5 6.0 66 42-107 175-270 (1188)
449 PF05014 Nuc_deoxyrib_tr: Nucl 79.3 13 0.00027 25.2 6.7 51 54-105 51-101 (113)
450 PF10087 DUF2325: Uncharacteri 79.3 6.5 0.00014 26.1 5.1 46 52-99 36-81 (97)
451 PRK00090 bioD dithiobiotin syn 78.5 1.6 3.4E-05 33.2 2.1 67 40-106 103-175 (222)
452 PHA02519 plasmid partition pro 78.2 6.1 0.00013 33.2 5.7 34 40-75 234-267 (387)
453 COG0378 HypB Ni2+-binding GTPa 76.9 2.6 5.6E-05 32.3 2.8 32 67-107 120-156 (202)
454 cd01854 YjeQ_engC YjeQ/EngC. 76.1 1.1 2.3E-05 36.0 0.6 15 2-16 171-185 (287)
455 PF03308 ArgK: ArgK protein; 75.8 1.7 3.7E-05 34.7 1.6 60 40-109 121-183 (266)
456 KOG3125|consensus 75.3 3.8 8.3E-05 31.5 3.3 100 1-105 36-143 (234)
457 PRK14721 flhF flagellar biosyn 75.1 15 0.00033 31.3 7.2 63 40-106 269-339 (420)
458 PRK13231 nitrogenase reductase 74.1 4.9 0.00011 31.4 3.9 65 40-104 113-179 (264)
459 TIGR03677 rpl7ae 50S ribosomal 72.2 8.6 0.00019 26.7 4.3 51 56-106 32-82 (117)
460 PRK13233 nifH nitrogenase redu 71.8 3.8 8.2E-05 32.2 2.8 59 40-103 118-187 (275)
461 PRK13232 nifH nitrogenase redu 71.7 6.4 0.00014 31.0 4.0 65 40-104 116-185 (273)
462 PRK06995 flhF flagellar biosyn 71.4 22 0.00048 30.9 7.5 65 40-106 334-404 (484)
463 PF02492 cobW: CobW/HypB/UreG, 71.3 10 0.00022 27.9 4.8 67 40-109 84-157 (178)
464 cd01983 Fer4_NifH The Fer4_Nif 70.5 18 0.00039 22.5 5.4 36 42-77 35-71 (99)
465 KOG1486|consensus 70.4 3.5 7.6E-05 33.1 2.2 38 40-77 108-152 (364)
466 PF06564 YhjQ: YhjQ protein; 70.1 21 0.00046 28.2 6.5 61 40-107 117-177 (243)
467 KOG0085|consensus 69.0 1.7 3.7E-05 34.5 0.2 70 40-109 198-282 (359)
468 COG1192 Soj ATPases involved i 68.8 20 0.00043 27.8 6.2 34 40-75 119-152 (259)
469 PRK11537 putative GTP-binding 68.6 11 0.00024 30.7 4.9 65 41-108 91-165 (318)
470 KOG2484|consensus 66.1 1.7 3.6E-05 36.8 -0.4 40 2-51 262-307 (435)
471 COG1703 ArgK Putative periplas 65.3 22 0.00047 29.2 5.8 61 41-109 144-205 (323)
472 PRK13695 putative NTPase; Prov 64.8 13 0.00028 27.1 4.2 43 60-104 92-137 (174)
473 PRK04175 rpl7ae 50S ribosomal 64.3 15 0.00033 25.7 4.2 51 56-106 36-86 (122)
474 TIGR02016 BchX chlorophyllide 63.9 15 0.00033 29.5 4.8 66 40-105 122-194 (296)
475 TIGR01287 nifH nitrogenase iro 63.4 11 0.00024 29.6 3.9 36 40-75 115-151 (275)
476 KOG1491|consensus 63.2 7.7 0.00017 32.4 2.9 74 2-75 30-125 (391)
477 COG1435 Tdk Thymidine kinase [ 62.1 22 0.00047 27.3 5.0 42 67-108 83-125 (201)
478 COG1419 FlhF Flagellar GTP-bin 62.0 37 0.00079 28.9 6.8 65 40-107 281-352 (407)
479 PRK09602 translation-associate 61.7 4.4 9.5E-05 34.2 1.3 18 90-107 214-231 (396)
480 PRK13505 formate--tetrahydrofo 60.2 22 0.00048 31.5 5.3 25 83-107 362-386 (557)
481 PRK13601 putative L7Ae-like ri 59.4 27 0.00058 22.7 4.5 50 56-106 14-63 (82)
482 PRK13602 putative ribosomal pr 59.1 29 0.00063 22.4 4.6 50 56-106 17-66 (82)
483 KOG2743|consensus 58.4 73 0.0016 26.5 7.6 67 40-109 145-227 (391)
484 PRK13235 nifH nitrogenase redu 57.1 12 0.00025 29.5 3.0 36 40-75 117-153 (274)
485 KOG1980|consensus 56.6 17 0.00037 32.7 4.1 44 56-99 133-176 (754)
486 cd02033 BchX Chlorophyllide re 56.4 20 0.00044 29.5 4.3 62 40-105 147-219 (329)
487 PRK13230 nitrogenase reductase 56.0 13 0.00029 29.3 3.1 36 40-75 116-152 (279)
488 PF08937 DUF1863: MTH538 TIR-l 55.5 34 0.00073 23.8 4.9 47 53-99 59-105 (130)
489 cd07021 Clp_protease_NfeD_like 55.3 52 0.0011 24.5 6.1 53 49-101 12-66 (178)
490 COG0012 Predicted GTPase, prob 55.2 19 0.00041 30.2 4.0 74 2-75 12-108 (372)
491 COG1358 RPL8A Ribosomal protei 54.4 24 0.00053 24.6 3.9 53 55-107 32-84 (116)
492 KOG2423|consensus 49.2 2.3 5.1E-05 36.2 -2.2 45 2-51 317-362 (572)
493 PRK13600 putative ribosomal pr 46.3 50 0.0011 21.6 4.1 51 55-106 18-68 (84)
494 PRK07714 hypothetical protein; 46.1 47 0.001 22.1 4.2 50 56-106 24-73 (100)
495 PRK12374 putative dithiobiotin 45.9 95 0.0021 23.7 6.5 64 40-105 105-176 (231)
496 PF01248 Ribosomal_L7Ae: Ribos 45.8 29 0.00063 22.6 3.1 51 56-106 21-71 (95)
497 PRK01018 50S ribosomal protein 45.8 53 0.0011 22.0 4.4 50 56-106 22-72 (99)
498 PF05783 DLIC: Dynein light in 45.5 36 0.00078 29.6 4.3 74 2-78 35-114 (472)
499 PRK13236 nitrogenase reductase 44.0 39 0.00084 27.1 4.1 65 40-104 121-191 (296)
500 KOG2485|consensus 42.5 17 0.00036 30.0 1.7 43 2-51 153-206 (335)
No 1
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.91 E-value=2.9e-23 Score=160.80 Aligned_cols=135 Identities=62% Similarity=1.006 Sum_probs=118.8
Q ss_pred cccccccCCchhHHHcCCccccceEEEEeecC---CCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDN---KDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 3 ~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~---~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
+|++|++|..++|++||+|++....++.|... ...+++++++|||||||++|...+..+++.+|++++|+|+.+|+.
T Consensus 32 ~g~~~~~D~~~~E~~RgiTi~~~~~~~~~~~~~~~~~~~~~~~i~iiDTPG~~~f~~~~~~~l~~aD~~ilVvD~~~g~~ 111 (222)
T cd01885 32 AGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSPGHVDFSSEVTAALRLCDGALVVVDAVEGVC 111 (222)
T ss_pred CCceeeccCCHHHHHhccccccceEEEEEecCcccccCCCceEEEEECCCCccccHHHHHHHHHhcCeeEEEEECCCCCC
Confidence 47788999999999999999998888888621 012447899999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhhhch
Q psy2609 80 AQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFA 137 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 137 (161)
.+++.+++.+...++|+++|+||+|+...+..+.+.+.+.++..+.++++..+.....
T Consensus 112 ~~t~~~l~~~~~~~~p~ilviNKiD~~~~e~~~~~~~~~~~~~~ii~~~n~~i~~~~~ 169 (222)
T cd01885 112 VQTETVLRQALKERVKPVLVINKIDRLILELKLSPEEAYQRLARIIEQVNAIIGTYAD 169 (222)
T ss_pred HHHHHHHHHHHHcCCCEEEEEECCCcchhhhcCCHHHHHHHHHHHHHHHhHHHHhccc
Confidence 9999999888888999999999999987777788899999999999999988776543
No 2
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=99.85 E-value=1.4e-21 Score=171.31 Aligned_cols=128 Identities=40% Similarity=0.540 Sum_probs=110.6
Q ss_pred ccccc----ccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC
Q psy2609 3 CMVSS----YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78 (161)
Q Consensus 3 ~g~~~----~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~ 78 (161)
+|+.+ ++|+++.|++||+|+.....++.|. + +++|+|||||||-+|...+..+++.+|++++|+|+..|+
T Consensus 40 ~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~-----~-~~~iNlIDTPGHVDFt~EV~rslrvlDgavvVvdaveGV 113 (697)
T COG0480 40 IGEVHDGAATMDWMEQEQERGITITSAATTLFWK-----G-DYRINLIDTPGHVDFTIEVERSLRVLDGAVVVVDAVEGV 113 (697)
T ss_pred CccccCCCccCCCcHHHHhcCCEEeeeeeEEEEc-----C-ceEEEEeCCCCccccHHHHHHHHHhhcceEEEEECCCCe
Confidence 45555 9999999999999999999999999 2 499999999999999999999999999999999999999
Q ss_pred ChhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHH--HHHHhhhhhhc
Q psy2609 79 CAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLL--EQVNAVMGELF 136 (161)
Q Consensus 79 ~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~ 136 (161)
.+|++..|+++...++|.++++||||+...++.....+...++.... -++|+..+..|
T Consensus 114 ~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~~~~~~~~l~~~l~~~~~~v~~pIg~~~~f 173 (697)
T COG0480 114 EPQTETVWRQADKYGVPRILFVNKMDRLGADFYLVVEQLKERLGANPVPVQLPIGAEEEF 173 (697)
T ss_pred eecHHHHHHHHhhcCCCeEEEEECccccccChhhhHHHHHHHhCCCceeeeccccCcccc
Confidence 99999999999999999999999999998887766777777766533 33444443333
No 3
>KOG0467|consensus
Probab=99.85 E-value=4.4e-21 Score=165.92 Aligned_cols=130 Identities=62% Similarity=0.999 Sum_probs=123.3
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChh
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQ 81 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~ 81 (161)
+|||.||+|..++|+.||||++.+.++.... ++.+++||+|||-+|.+++.++.+-+|++++++|+.+|+..|
T Consensus 40 lagkirfld~redeq~rgitmkss~is~~~~-------~~~~nlidspghvdf~sevssas~l~d~alvlvdvvegv~~q 112 (887)
T KOG0467|consen 40 LAGKIRFLDTREDEQTRGITMKSSAISLLHK-------DYLINLIDSPGHVDFSSEVSSASRLSDGALVLVDVVEGVCSQ 112 (887)
T ss_pred hccceeeccccchhhhhceeeeccccccccC-------ceEEEEecCCCccchhhhhhhhhhhcCCcEEEEeeccccchh
Confidence 6999999999999999999999999987666 899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhhhchh
Q psy2609 82 TQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFAS 138 (161)
Q Consensus 82 ~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 138 (161)
+...++++...+..+++|+||+|+..-+..+.+.++|..+.+++++++..++..++.
T Consensus 113 t~~vlrq~~~~~~~~~lvinkidrl~~el~lsp~ea~~~l~r~i~~vn~~i~~~~~~ 169 (887)
T KOG0467|consen 113 TYAVLRQAWIEGLKPILVINKIDRLITELKLSPQEAYEHLLRVIEQVNGVIGQFLGG 169 (887)
T ss_pred HHHHHHHHHHccCceEEEEehhhhHHHHHhcChHHHHHHHHHHHHHhhhHHHHhhcc
Confidence 999999999999999999999999888888899999999999999999999987764
No 4
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=99.84 E-value=5e-21 Score=152.22 Aligned_cols=125 Identities=32% Similarity=0.471 Sum_probs=101.9
Q ss_pred cccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 5 ~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
+++++|..++|++||+|++....++.|. +++++||||||+.+|...+..+++.+|++++|+|+..++..++..
T Consensus 35 ~~~~~D~~~~E~~rgiti~~~~~~~~~~-------~~~i~liDTPG~~df~~~~~~~l~~aD~ailVVDa~~g~~~~t~~ 107 (270)
T cd01886 35 GGATMDFMEQERERGITIQSAATTCFWK-------DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVAGVEPQTET 107 (270)
T ss_pred CccccCCCccccCCCcCeeccEEEEEEC-------CEEEEEEECCCcHHHHHHHHHHHHHcCEEEEEEECCCCCCHHHHH
Confidence 3567888899999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhhh--cCChHHHHHhHHHHHHHHHhhhhhhc
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILEM--KLSPLDIYVHLSQLLEQVNAVMGELF 136 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~ 136 (161)
+++.+...++|+++++||+|+...+. .+...+...+...+..++|++.+..|
T Consensus 108 ~~~~~~~~~~p~ivviNK~D~~~a~~~~~~~~l~~~l~~~~~~~~~Pisa~~~f 161 (270)
T cd01886 108 VWRQADRYNVPRIAFVNKMDRTGADFFRVVEQIREKLGANPVPLQLPIGEEDDF 161 (270)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCCCHHHHHHHHHHHhCCCceEEEeccccCCCc
Confidence 99999889999999999999975432 11111222222234455777776554
No 5
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.82 E-value=1.5e-19 Score=162.58 Aligned_cols=131 Identities=50% Similarity=0.858 Sum_probs=116.6
Q ss_pred cccccccCCchhHHHcCCccccceEEEEeecCC---------CCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEe
Q psy2609 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNK---------DTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVD 73 (161)
Q Consensus 3 ~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~---------~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd 73 (161)
+|+++++|..++|+++|+|++....++.|.... ..+.++.++|+|||||.+|...+..+++.+|++|+|+|
T Consensus 51 ~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~inliDtPGh~dF~~e~~~al~~~D~ailVvd 130 (843)
T PLN00116 51 AGDVRMTDTRADEAERGITIKSTGISLYYEMTDESLKDFKGERDGNEYLINLIDSPGHVDFSSEVTAALRITDGALVVVD 130 (843)
T ss_pred CCceeeccCcHHHHHhCCceecceeEEEeecccccccccccccCCCceEEEEECCCCHHHHHHHHHHHHhhcCEEEEEEE
Confidence 577888999999999999999998888885210 12347899999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhh
Q psy2609 74 CVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMG 133 (161)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (161)
+.+|+..+++.+|+++...++|+|+++||+|+...+..++..++|..+..++++++..+.
T Consensus 131 a~~Gv~~~t~~~~~~~~~~~~p~i~~iNK~D~~~~~~~~~~~~~~~~~~~vi~~in~~~~ 190 (843)
T PLN00116 131 CIEGVCVQTETVLRQALGERIRPVLTVNKMDRCFLELQVDGEEAYQTFSRVIENANVIMA 190 (843)
T ss_pred CCCCCcccHHHHHHHHHHCCCCEEEEEECCcccchhhcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999888888899999999999999985543
No 6
>PTZ00416 elongation factor 2; Provisional
Probab=99.82 E-value=1.6e-19 Score=162.17 Aligned_cols=131 Identities=53% Similarity=0.941 Sum_probs=116.4
Q ss_pred cccccccCCchhHHHcCCccccceEEEEeecCC---CCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNK---DTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 3 ~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~---~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
+|+++++|..++|++||+|++....++.|.... ..++++.++|+|||||.+|...+..+++.+|++|+|+|+..|+.
T Consensus 51 ~g~~~~~D~~~~E~~rgiti~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f~~~~~~al~~~D~ailVvda~~g~~ 130 (836)
T PTZ00416 51 AGDARFTDTRADEQERGITIKSTGISLYYEHDLEDGDDKQPFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDCVEGVC 130 (836)
T ss_pred CCceeecccchhhHhhcceeeccceEEEeecccccccCCCceEEEEEcCCCHHhHHHHHHHHHhcCCeEEEEEECCCCcC
Confidence 577888999999999999999988888886211 11336789999999999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhh
Q psy2609 80 AQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMG 133 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (161)
.+++.+|+.+...++|+|+|+||+|+.-.+..+.+.++|..+..++++++..+.
T Consensus 131 ~~t~~~~~~~~~~~~p~iv~iNK~D~~~~~~~~~~~~~~~~~~~ii~~in~~l~ 184 (836)
T PTZ00416 131 VQTETVLRQALQERIRPVLFINKVDRAILELQLDPEEIYQNFVKTIENVNVIIA 184 (836)
T ss_pred ccHHHHHHHHHHcCCCEEEEEEChhhhhhhcCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998777788899999999999999887655
No 7
>PF00009 GTP_EFTU: Elongation factor Tu GTP binding domain; InterPro: IPR000795 Elongation factors belong to a family of proteins that promote the GTP-dependent binding of aminoacyl tRNA to the A site of ribosomes during protein biosynthesis, and catalyse the translocation of the synthesised protein chain from the A to the P site. The proteins are all relatively similar in the vicinity of their C-termini, and are also highly similar to a range of proteins that includes the nodulation Q protein from Rhizobium meliloti (Sinorhizobium meliloti), bacterial tetracycline resistance proteins [] and the omnipotent suppressor protein 2 from yeast. In both prokaryotes and eukaryotes, there are three distinct types of elongation factors, EF-1alpha (EF-Tu), which binds GTP and an aminoacyl-tRNAand delivers the latter to the A site of ribosomes; EF-1beta (EF-Ts), which interacts with EF-1a/EF-Tu to displace GDP and thus allows the regeneration of GTP-EF-1a; and EF-2 (EF-G), which binds GTP and peptidyl-tRNA and translocates the latter from the A site to the P site. In EF-1-alpha, a specific region has been shown [] to be involved in a conformational change mediated by the hydrolysis of GTP to GDP. This region is conserved in both EF-1alpha/EF-Tu as well as EF-2/EF-G and thus seems typical for GTP-dependent proteins which bind non-initiator tRNAs to the ribosome. The GTP-binding protein synthesis factor family also includes the eukaryotic peptide chain release factor GTP-binding subunits [] and prokaryotic peptide chain release factor 3 (RF-3) []; the prokaryotic GTP-binding protein lepA and its homologue in yeast (GUF1) and Caenorhabditis elegans (ZK1236.1); yeast HBS1 []; rat statin S1 []; and the prokaryotic selenocysteine-specific elongation factor selB [].; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 3IZW_C 1DG1_G 2BVN_B 3IZV_C 3MMP_C 1OB2_A 1EFU_A 3FIH_Z 3TR5_A 1TUI_C ....
Probab=99.81 E-value=1.1e-19 Score=136.81 Aligned_cols=96 Identities=42% Similarity=0.544 Sum_probs=87.9
Q ss_pred cccCCchhHHHcCCccccceEEEE--eecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLY--YKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~--~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
+++|..++|+++|+|++.....+. +. .++++|+|||||.+|...+..+++.+|++|+|+|+.+|+..++.+
T Consensus 41 ~~~~~~~~e~~~~~ti~~~~~~~~~~~~-------~~~i~~iDtPG~~~f~~~~~~~~~~~D~ailvVda~~g~~~~~~~ 113 (188)
T PF00009_consen 41 AFLDKHPEERERGITIDLSFISFEKNEN-------NRKITLIDTPGHEDFIKEMIRGLRQADIAILVVDANDGIQPQTEE 113 (188)
T ss_dssp CHHHSSHHHHHCTSSSSSEEEEEEBTES-------SEEEEEEEESSSHHHHHHHHHHHTTSSEEEEEEETTTBSTHHHHH
T ss_pred ccccccchhhhccccccccccccccccc-------ccceeecccccccceeecccceecccccceeeeeccccccccccc
Confidence 456788999999999999988888 55 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++..+...++|+|+|+||+|+...+
T Consensus 114 ~l~~~~~~~~p~ivvlNK~D~~~~~ 138 (188)
T PF00009_consen 114 HLKILRELGIPIIVVLNKMDLIEKE 138 (188)
T ss_dssp HHHHHHHTT-SEEEEEETCTSSHHH
T ss_pred ccccccccccceEEeeeeccchhhh
Confidence 9999999999999999999998544
No 8
>PRK07560 elongation factor EF-2; Reviewed
Probab=99.80 E-value=6.5e-19 Score=156.59 Aligned_cols=129 Identities=43% Similarity=0.737 Sum_probs=110.6
Q ss_pred cccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhH
Q psy2609 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQT 82 (161)
Q Consensus 3 ~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~ 82 (161)
.|+++++|..++|++||+|+++...++.|... +++++++|+|||||++|...+..+++.+|++|+|+|+..|+..++
T Consensus 52 ~g~~~~~D~~~~E~~rgiTi~~~~~~~~~~~~---~~~~~i~liDtPG~~df~~~~~~~l~~~D~avlVvda~~g~~~~t 128 (731)
T PRK07560 52 AGEQLALDFDEEEQARGITIKAANVSMVHEYE---GKEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVDAVEGVMPQT 128 (731)
T ss_pred cCcceecCccHHHHHhhhhhhccceEEEEEec---CCcEEEEEEcCCCccChHHHHHHHHHhcCEEEEEEECCCCCCccH
Confidence 46778899999999999999999888887321 458899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhh
Q psy2609 83 QVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGE 134 (161)
Q Consensus 83 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 134 (161)
+.+|+.+...++|.|+|+||+|+...+......+.+..+....+.+...+..
T Consensus 129 ~~~~~~~~~~~~~~iv~iNK~D~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~ 180 (731)
T PRK07560 129 ETVLRQALRERVKPVLFINKVDRLIKELKLTPQEMQQRLLKIIKDVNKLIKG 180 (731)
T ss_pred HHHHHHHHHcCCCeEEEEECchhhcccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988888899999999999987776666677777777766666655443
No 9
>KOG0462|consensus
Probab=99.80 E-value=2e-19 Score=151.50 Aligned_cols=103 Identities=45% Similarity=0.691 Sum_probs=97.0
Q ss_pred cccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhH
Q psy2609 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQT 82 (161)
Q Consensus 3 ~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~ 82 (161)
.|.-+++|++.-|+|||||+++...++.|.. +..+.+++||||||.+|..++...+..||++|+|+|+.+|+..|+
T Consensus 91 ~~q~q~LDkl~vERERGITIkaQtasify~~----~~~ylLNLIDTPGHvDFs~EVsRslaac~G~lLvVDA~qGvqAQT 166 (650)
T KOG0462|consen 91 IGQEQVLDKLQVERERGITIKAQTASIFYKD----GQSYLLNLIDTPGHVDFSGEVSRSLAACDGALLVVDASQGVQAQT 166 (650)
T ss_pred CchhhhhhhhhhhhhcCcEEEeeeeEEEEEc----CCceEEEeecCCCcccccceehehhhhcCceEEEEEcCcCchHHH
Confidence 4677899999999999999999999999984 667999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 83 QVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 83 ~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
...+..+...+..+|.|+||+|++.++
T Consensus 167 ~anf~lAfe~~L~iIpVlNKIDlp~ad 193 (650)
T KOG0462|consen 167 VANFYLAFEAGLAIIPVLNKIDLPSAD 193 (650)
T ss_pred HHHHHHHHHcCCeEEEeeeccCCCCCC
Confidence 999888889999999999999999876
No 10
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=99.79 E-value=4.1e-18 Score=130.70 Aligned_cols=128 Identities=50% Similarity=0.827 Sum_probs=102.8
Q ss_pred ccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHH
Q psy2609 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83 (161)
Q Consensus 4 g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~ 83 (161)
|.++++|..++|+++|+|+......+.+... .++.+++++|||||+++|...+..++..+|++++|+|+..+...++.
T Consensus 36 ~~~~~~d~~~~e~~~giti~~~~~~~~~~~~--~~~~~~i~iiDtpG~~~f~~~~~~~~~~aD~~llVvD~~~~~~~~~~ 113 (213)
T cd04167 36 KPLRYTDIRKDEQERGISIKSSPISLVLPDS--KGKSYLFNIIDTPGHVNFMDEVAAALRLSDGVVLVVDVVEGVTSNTE 113 (213)
T ss_pred CceeECCCCHHHHHcCccccccceeEEEEcC--CCCEEEEEEEECCCCcchHHHHHHHHHhCCEEEEEEECCCCCCHHHH
Confidence 3456778889999999999988888877521 14468999999999999999999999999999999999988877777
Q ss_pred HHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhh
Q psy2609 84 VALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMG 133 (161)
Q Consensus 84 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (161)
.+++.....++|+++|+||+|+...+..+...+.+.++....+.++..+.
T Consensus 114 ~~~~~~~~~~~p~iiviNK~D~~~~~~~l~~~~~~~~l~~~i~~~n~~~~ 163 (213)
T cd04167 114 RLIRHAILEGLPIVLVINKIDRLILELKLPPNDAYFKLRHIIDEVNNIIA 163 (213)
T ss_pred HHHHHHHHcCCCEEEEEECcccCcccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 77777766789999999999987544444556666677776666665554
No 11
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.79 E-value=1.3e-18 Score=132.35 Aligned_cols=94 Identities=28% Similarity=0.407 Sum_probs=84.4
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+.+|..++|+++|+|++.....+.+. +.+++|+|||||.+|...+..++..+|++++|+|+..++..++.+++
T Consensus 38 ~~~d~~~~E~~rg~Ti~~~~~~~~~~-------~~~i~~iDtPG~~~~~~~~~~~~~~~D~~ilVvda~~g~~~~~~~~~ 110 (195)
T cd01884 38 DEIDKAPEEKARGITINTAHVEYETA-------NRHYAHVDCPGHADYIKNMITGAAQMDGAILVVSATDGPMPQTREHL 110 (195)
T ss_pred ccccCChhhhhcCccEEeeeeEecCC-------CeEEEEEECcCHHHHHHHHHHHhhhCCEEEEEEECCCCCcHHHHHHH
Confidence 45788899999999999877666554 77999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC-cEEEEECCcchh
Q psy2609 87 KQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 87 ~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
..+...++| +|+|+||+|+..
T Consensus 111 ~~~~~~~~~~iIvviNK~D~~~ 132 (195)
T cd01884 111 LLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred HHHHHcCCCcEEEEEeCCCCCC
Confidence 999989998 678999999963
No 12
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=99.79 E-value=2.4e-18 Score=134.46 Aligned_cols=97 Identities=37% Similarity=0.591 Sum_probs=89.3
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
.+++|..++|+++|+|+......+.|. ++++++|||||+.+|...+..+++.+|++++|+|+.+++..++..+
T Consensus 36 ~~~~D~~~~e~~rg~ti~~~~~~~~~~-------~~~i~liDTPG~~~f~~~~~~~l~~aD~~IlVvd~~~g~~~~~~~~ 108 (237)
T cd04168 36 TTRTDTMELERQRGITIFSAVASFQWE-------DTKVNLIDTPGHMDFIAEVERSLSVLDGAILVISAVEGVQAQTRIL 108 (237)
T ss_pred cccCCCchhHhhCCCceeeeeEEEEEC-------CEEEEEEeCCCccchHHHHHHHHHHhCeEEEEEeCCCCCCHHHHHH
Confidence 466788899999999999998888887 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEECCcchhhh
Q psy2609 86 LKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 86 ~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++.+...++|+++|+||+|+...+
T Consensus 109 ~~~~~~~~~P~iivvNK~D~~~a~ 132 (237)
T cd04168 109 WRLLRKLNIPTIIFVNKIDRAGAD 132 (237)
T ss_pred HHHHHHcCCCEEEEEECccccCCC
Confidence 998888899999999999997644
No 13
>TIGR01394 TypA_BipA GTP-binding protein TypA/BipA. This bacterial (and Arabidopsis) protein, termed TypA or BipA, a GTP-binding protein, is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.
Probab=99.78 E-value=2.4e-18 Score=149.61 Aligned_cols=96 Identities=41% Similarity=0.651 Sum_probs=89.3
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
.+++|..++|+++|+|+......+.|. +++++|||||||.+|...+..+++.+|++++|+|+.+++..++..+
T Consensus 36 ~~~~D~~~~ErerGiTI~~~~~~v~~~-------~~kinlIDTPGh~DF~~ev~~~l~~aD~alLVVDa~~G~~~qT~~~ 108 (594)
T TIGR01394 36 ERVMDSNDLERERGITILAKNTAIRYN-------GTKINIVDTPGHADFGGEVERVLGMVDGVLLLVDASEGPMPQTRFV 108 (594)
T ss_pred eecccCchHHHhCCccEEeeeEEEEEC-------CEEEEEEECCCHHHHHHHHHHHHHhCCEEEEEEeCCCCCcHHHHHH
Confidence 356788889999999999999999998 7899999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEECCcchhh
Q psy2609 86 LKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 86 ~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+..+...++|+|+|+||+|+...
T Consensus 109 l~~a~~~~ip~IVviNKiD~~~a 131 (594)
T TIGR01394 109 LKKALELGLKPIVVINKIDRPSA 131 (594)
T ss_pred HHHHHHCCCCEEEEEECCCCCCc
Confidence 99999999999999999998653
No 14
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=99.78 E-value=6.5e-19 Score=139.89 Aligned_cols=98 Identities=32% Similarity=0.515 Sum_probs=88.6
Q ss_pred cccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 5 ~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
+.+++|..++|+++|+|+......+.|. ++++++|||||+.+|...+..+++.+|++|+|+|++.++..++..
T Consensus 42 ~~t~~D~~~~e~~rg~si~~~~~~~~~~-------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvda~~g~~~~~~~ 114 (267)
T cd04169 42 KHATSDWMEIEKQRGISVTSSVMQFEYR-------DCVINLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGVEPQTRK 114 (267)
T ss_pred CCccCCCcHHHHhCCCCeEEEEEEEeeC-------CEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCccHHHHH
Confidence 3456788899999999999998899888 789999999999999999999999999999999999998888888
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+++.....++|+++++||+|+....
T Consensus 115 i~~~~~~~~~P~iivvNK~D~~~a~ 139 (267)
T cd04169 115 LFEVCRLRGIPIITFINKLDREGRD 139 (267)
T ss_pred HHHHHHhcCCCEEEEEECCccCCCC
Confidence 8888877899999999999987654
No 15
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.77 E-value=3e-18 Score=126.85 Aligned_cols=96 Identities=46% Similarity=0.713 Sum_probs=77.8
Q ss_pred CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH
Q psy2609 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQA 89 (161)
Q Consensus 10 D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~ 89 (161)
+..+.|+.+|+|+......+.|... +++.++++||||||+++|...+..+++.+|++|+|+|++++...++...+..+
T Consensus 38 ~~~~~~~~~g~t~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~~~~~~~~~~~~~~~ 115 (179)
T cd01890 38 DSMDLERERGITIKAQTVRLNYKAK--DGQEYLLNLIDTPGHVDFSYEVSRSLAACEGALLLVDATQGVEAQTLANFYLA 115 (179)
T ss_pred cCChhHHHCCCeEecceEEEEEecC--CCCcEEEEEEECCCChhhHHHHHHHHHhcCeEEEEEECCCCccHhhHHHHHHH
Confidence 3344567889998877766666310 15578999999999999999999999999999999999988777777766666
Q ss_pred HHcCCCcEEEEECCcchh
Q psy2609 90 WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 90 ~~~~~p~ilv~NK~Dl~~ 107 (161)
...++|+++|+||+|+..
T Consensus 116 ~~~~~~iiiv~NK~Dl~~ 133 (179)
T cd01890 116 LENNLEIIPVINKIDLPS 133 (179)
T ss_pred HHcCCCEEEEEECCCCCc
Confidence 667899999999999864
No 16
>PRK12739 elongation factor G; Reviewed
Probab=99.77 E-value=8.7e-19 Score=154.97 Aligned_cols=98 Identities=39% Similarity=0.609 Sum_probs=91.7
Q ss_pred cccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 5 ~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
.++++|..++|++||+|++....++.|. +++++|||||||.+|...+..+++.+|++|+|+|+..++..+++.
T Consensus 44 ~~~~~D~~~~E~~rgiti~~~~~~~~~~-------~~~i~liDTPG~~~f~~e~~~al~~~D~~ilVvDa~~g~~~qt~~ 116 (691)
T PRK12739 44 GAATMDWMEQEQERGITITSAATTCFWK-------GHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVSGVEPQSET 116 (691)
T ss_pred CccccCCChhHhhcCCCccceeEEEEEC-------CEEEEEEcCCCHHHHHHHHHHHHHHhCeEEEEEeCCCCCCHHHHH
Confidence 4578899999999999999999999997 889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++..+...++|+|+++||+|+...+
T Consensus 117 i~~~~~~~~~p~iv~iNK~D~~~~~ 141 (691)
T PRK12739 117 VWRQADKYGVPRIVFVNKMDRIGAD 141 (691)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCCC
Confidence 9999999999999999999998643
No 17
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.77 E-value=4e-18 Score=139.99 Aligned_cols=97 Identities=30% Similarity=0.467 Sum_probs=86.9
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC-------C
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG-------I 78 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~-------~ 78 (161)
+|+||.+++||+||+|++.....|+-. .+.++|+|||||.+|...+..+.+.||++|||+|+..+ +
T Consensus 57 awvlD~tkeERerGvTi~~~~~~fet~-------k~~~tIiDaPGHrdFvknmItGasqAD~aVLVV~a~~~efE~g~~~ 129 (428)
T COG5256 57 AWVLDKTKEERERGVTIDVAHSKFETD-------KYNFTIIDAPGHRDFVKNMITGASQADVAVLVVDARDGEFEAGFGV 129 (428)
T ss_pred EEEecCChhHHhcceEEEEEEEEeecC-------CceEEEeeCCchHHHHHHhhcchhhccEEEEEEECCCCcccccccc
Confidence 378999999999999999887777654 78999999999999999999999999999999999987 7
Q ss_pred ChhHHHHHHHHHHcCCCc-EEEEECCcchhhh
Q psy2609 79 CAQTQVALKQAWLEKIQP-ILVLNKIDRLILE 109 (161)
Q Consensus 79 ~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~~ 109 (161)
..|+.+++-+++..++.. |+++||||+...+
T Consensus 130 ~gQtrEH~~La~tlGi~~lIVavNKMD~v~wd 161 (428)
T COG5256 130 GGQTREHAFLARTLGIKQLIVAVNKMDLVSWD 161 (428)
T ss_pred CCchhHHHHHHHhcCCceEEEEEEcccccccC
Confidence 899999998888888886 5789999998643
No 18
>TIGR02034 CysN sulfate adenylyltransferase, large subunit. Homologous to this E.coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulfurase and APS kinase activity, yet are involved in Nod factor sulfation, and sulfation of other macromolecules. With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulfurase) and cysC (APS kinase).
Probab=99.76 E-value=5.8e-18 Score=141.58 Aligned_cols=95 Identities=25% Similarity=0.359 Sum_probs=85.9
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
+|++|..++|++||+|++.....+.+. +.+++|||||||++|...+..++..+|++++|+|+..|+..++.++
T Consensus 52 ~~~~D~~~eE~~rgiTid~~~~~~~~~-------~~~~~liDtPGh~~f~~~~~~~~~~aD~allVVda~~G~~~qt~~~ 124 (406)
T TIGR02034 52 ALLVDGLQAEREQGITIDVAYRYFSTD-------KRKFIVADTPGHEQYTRNMATGASTADLAVLLVDARKGVLEQTRRH 124 (406)
T ss_pred eeeccCChHHhcCCcCeEeeeEEEccC-------CeEEEEEeCCCHHHHHHHHHHHHhhCCEEEEEEECCCCCccccHHH
Confidence 368999999999999999988887776 7799999999999999999999999999999999999999999998
Q ss_pred HHHHHHcCCC-cEEEEECCcchh
Q psy2609 86 LKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 86 ~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
+..+...++| +|+|+||+|+..
T Consensus 125 ~~~~~~~~~~~iivviNK~D~~~ 147 (406)
T TIGR02034 125 SYIASLLGIRHVVLAVNKMDLVD 147 (406)
T ss_pred HHHHHHcCCCcEEEEEEeccccc
Confidence 8888777776 577999999974
No 19
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=99.76 E-value=1.6e-18 Score=148.94 Aligned_cols=99 Identities=31% Similarity=0.486 Sum_probs=90.5
Q ss_pred ccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHH
Q psy2609 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83 (161)
Q Consensus 4 g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~ 83 (161)
|+.+++|+++.|+++|+|+.....++.|. ++++++||||||.+|...+..+++.+|++|+|+|++.++..++.
T Consensus 49 ~~~~~~D~~~~E~~rgiSi~~~~~~~~~~-------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~ 121 (526)
T PRK00741 49 GRHATSDWMEMEKQRGISVTSSVMQFPYR-------DCLINLLDTPGHEDFSEDTYRTLTAVDSALMVIDAAKGVEPQTR 121 (526)
T ss_pred CccccCCCcHHHHhhCCceeeeeEEEEEC-------CEEEEEEECCCchhhHHHHHHHHHHCCEEEEEEecCCCCCHHHH
Confidence 34456799999999999999998888887 78999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 84 VALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 84 ~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
.+++.+...++|+++++||+|+...+
T Consensus 122 ~l~~~~~~~~iPiiv~iNK~D~~~a~ 147 (526)
T PRK00741 122 KLMEVCRLRDTPIFTFINKLDRDGRE 147 (526)
T ss_pred HHHHHHHhcCCCEEEEEECCcccccC
Confidence 99998888999999999999987654
No 20
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=99.76 E-value=2.9e-18 Score=141.53 Aligned_cols=109 Identities=30% Similarity=0.494 Sum_probs=97.7
Q ss_pred ccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHH
Q psy2609 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83 (161)
Q Consensus 4 g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~ 83 (161)
|+-...|++..|++|||++-++..+|.|. ++.++++|||||++|..-+...|..+|.++.|+|+.+|+.+++.
T Consensus 51 ~~~a~SDWM~iEkqRGISVtsSVMqF~Y~-------~~~iNLLDTPGHeDFSEDTYRtLtAvDsAvMVIDaAKGiE~qT~ 123 (528)
T COG4108 51 GKHAKSDWMEIEKQRGISVTSSVMQFDYA-------DCLVNLLDTPGHEDFSEDTYRTLTAVDSAVMVIDAAKGIEPQTL 123 (528)
T ss_pred CcccccHHHHHHHhcCceEEeeEEEeccC-------CeEEeccCCCCccccchhHHHHHHhhheeeEEEecccCccHHHH
Confidence 34445699999999999999999999998 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHH
Q psy2609 84 VALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQ 123 (161)
Q Consensus 84 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~ 123 (161)
.+.+.++..++|++-++||+|+...+ +.+...++..
T Consensus 124 KLfeVcrlR~iPI~TFiNKlDR~~rd----P~ELLdEiE~ 159 (528)
T COG4108 124 KLFEVCRLRDIPIFTFINKLDREGRD----PLELLDEIEE 159 (528)
T ss_pred HHHHHHhhcCCceEEEeeccccccCC----hHHHHHHHHH
Confidence 99999999999999999999998765 4555555443
No 21
>PRK00007 elongation factor G; Reviewed
Probab=99.76 E-value=1.7e-18 Score=153.12 Aligned_cols=98 Identities=40% Similarity=0.608 Sum_probs=92.0
Q ss_pred cccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 5 ~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
+++++|..++|+++|+|++....++.|. +++++|+|||||.+|...+..+++.+|++|+|+|+..|+..++..
T Consensus 46 ~~~~~D~~~~E~~rg~ti~~~~~~~~~~-------~~~~~liDTPG~~~f~~ev~~al~~~D~~vlVvda~~g~~~qt~~ 118 (693)
T PRK00007 46 GAATMDWMEQEQERGITITSAATTCFWK-------DHRINIIDTPGHVDFTIEVERSLRVLDGAVAVFDAVGGVEPQSET 118 (693)
T ss_pred CcccCCCCHHHHhCCCCEeccEEEEEEC-------CeEEEEEeCCCcHHHHHHHHHHHHHcCEEEEEEECCCCcchhhHH
Confidence 4578899999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++.++...++|+|+|+||+|+...+
T Consensus 119 ~~~~~~~~~~p~iv~vNK~D~~~~~ 143 (693)
T PRK00007 119 VWRQADKYKVPRIAFVNKMDRTGAD 143 (693)
T ss_pred HHHHHHHcCCCEEEEEECCCCCCCC
Confidence 9999999999999999999998644
No 22
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=99.76 E-value=6.4e-18 Score=130.35 Aligned_cols=94 Identities=29% Similarity=0.406 Sum_probs=81.4
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC-------CCC
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE-------GIC 79 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~-------~~~ 79 (161)
+++|..++|+++|+|++.....+.+. +++++||||||+.+|...+..+++.+|++|+|+|+++ +..
T Consensus 50 ~~~d~~~~E~~rg~T~d~~~~~~~~~-------~~~i~liDtpG~~~~~~~~~~~~~~~d~~i~VvDa~~~~~~~~~~~~ 122 (219)
T cd01883 50 WVLDTLKEERERGVTIDVGLAKFETE-------KYRFTILDAPGHRDFVPNMITGASQADVAVLVVDARKGEFEAGFEKG 122 (219)
T ss_pred hhhcCCHHHhhCccCeecceEEEeeC-------CeEEEEEECCChHHHHHHHHHHhhhCCEEEEEEECCCCccccccccc
Confidence 58899999999999999999988887 7899999999999999999999999999999999987 455
Q ss_pred hhHHHHHHHHHHcC-CCcEEEEECCcchh
Q psy2609 80 AQTQVALKQAWLEK-IQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~~~~~~~~~~~-~p~ilv~NK~Dl~~ 107 (161)
.++...+......+ .|+++|+||+|+..
T Consensus 123 ~~~~~~~~~~~~~~~~~iiivvNK~Dl~~ 151 (219)
T cd01883 123 GQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred cchHHHHHHHHHcCCCeEEEEEEcccccc
Confidence 56667666665566 56788999999973
No 23
>KOG0084|consensus
Probab=99.76 E-value=1.9e-18 Score=129.34 Aligned_cols=102 Identities=17% Similarity=0.112 Sum_probs=83.2
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
+.||+=++ |.+++++...|.++....++.+. ++..++++|||+|++||+..+.+||++|+++|+|+|.++
T Consensus 19 ~VGKtCL~~Rf~~~~f~e~~~sTIGVDf~~rt~e~~-----gk~iKlQIWDTAGQERFrtit~syYR~ahGii~vyDiT~ 93 (205)
T KOG0084|consen 19 GVGKTCLLLRFKDDTFTESYISTIGVDFKIRTVELD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIFVYDITK 93 (205)
T ss_pred CcChhhhhhhhccCCcchhhcceeeeEEEEEEeeec-----ceEEEEEeeeccccHHHhhhhHhhccCCCeEEEEEEccc
Confidence 56776554 77789999999999998999888 779999999999999999999999999999999999997
Q ss_pred CCChhHHHHH-HHHH---HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQVAL-KQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
..+......| ..+. ..++|.+||+||+|+...
T Consensus 94 ~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~ 129 (205)
T KOG0084|consen 94 QESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEK 129 (205)
T ss_pred HHHhhhHHHHHHHhhhhccCCCCeEEEeeccccHhh
Confidence 5544443333 1222 257899999999999754
No 24
>KOG0469|consensus
Probab=99.76 E-value=7.7e-19 Score=147.12 Aligned_cols=134 Identities=49% Similarity=0.876 Sum_probs=121.6
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCC---------CCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEE
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNK---------DTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVV 72 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~---------~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVv 72 (161)
.||.+||+|..+.|++|||||+...+++.+.... .++.++.+++||.|||-+|.+++..+++..|++++|+
T Consensus 50 kaGe~Rf~DtRkDEQeR~iTIKStAISl~~e~~~~dl~~~k~~~d~~~FLiNLIDSPGHVDFSSEVTAALRVTDGALVVV 129 (842)
T KOG0469|consen 50 KAGETRFTDTRKDEQERGITIKSTAISLFFEMSDDDLKFIKQEGDGNGFLINLIDSPGHVDFSSEVTAALRVTDGALVVV 129 (842)
T ss_pred ccCCccccccccchhhcceEeeeeeeeehhhhhHhHHHHhcCCCCCcceeEEeccCCCcccchhhhhheeEeccCcEEEE
Confidence 4799999999999999999999999988775332 1566899999999999999999999999999999999
Q ss_pred eCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhhh
Q psy2609 73 DCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGEL 135 (161)
Q Consensus 73 d~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 135 (161)
|+.+|+.-|++..+++.....+..++++||+|++--+.++..++.|+-+++..+.+++.+..+
T Consensus 130 Dcv~GvCVQTETVLrQA~~ERIkPvlv~NK~DRAlLELq~~~EeLyqtf~R~VE~vNviisTy 192 (842)
T KOG0469|consen 130 DCVSGVCVQTETVLRQAIAERIKPVLVMNKMDRALLELQLSQEELYQTFQRIVENVNVIISTY 192 (842)
T ss_pred EccCceEechHHHHHHHHHhhccceEEeehhhHHHHhhcCCHHHHHHHHHHHHhcccEEEEec
Confidence 999999999999999999999999999999999888888999999999999999988776653
No 25
>PLN00043 elongation factor 1-alpha; Provisional
Probab=99.76 E-value=4.3e-18 Score=143.84 Aligned_cols=94 Identities=29% Similarity=0.410 Sum_probs=83.8
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC-------
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI------- 78 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~------- 78 (161)
+|++|..++|+++|+|++.....+.+. ++.++|+|||||++|.+.+..+++.+|++|+|+|++.|.
T Consensus 57 a~~~D~~~~Er~rGiTi~~~~~~~~~~-------~~~i~liDtPGh~df~~~~~~g~~~aD~aIlVVda~~G~~e~g~~~ 129 (447)
T PLN00043 57 AWVLDKLKAERERGITIDIALWKFETT-------KYYCTVIDAPGHRDFIKNMITGTSQADCAVLIIDSTTGGFEAGISK 129 (447)
T ss_pred hhhhcCCHhHHhcCceEEEEEEEecCC-------CEEEEEEECCCHHHHHHHHHhhhhhccEEEEEEEcccCceecccCC
Confidence 578999999999999999877766655 889999999999999999999999999999999999863
Q ss_pred ChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 79 CAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 79 ~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
..++.+++..+...++|. |+|+||||+.
T Consensus 130 ~~qT~eh~~~~~~~gi~~iIV~vNKmD~~ 158 (447)
T PLN00043 130 DGQTREHALLAFTLGVKQMICCCNKMDAT 158 (447)
T ss_pred CchHHHHHHHHHHcCCCcEEEEEEcccCC
Confidence 268888998888889975 7789999986
No 26
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=99.75 E-value=2.1e-18 Score=143.55 Aligned_cols=134 Identities=36% Similarity=0.539 Sum_probs=108.7
Q ss_pred cccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 5 ~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
+..++|.+.-|++||||++.....+.|... +++.|.+++||||||-+|.-++..++..|.++++|+|+++|++.|+..
T Consensus 42 ~~Q~LDsMdiERERGITIKaq~v~l~Yk~~--~g~~Y~lnlIDTPGHVDFsYEVSRSLAACEGalLvVDAsQGveAQTlA 119 (603)
T COG0481 42 RAQVLDSMDIERERGITIKAQAVRLNYKAK--DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 119 (603)
T ss_pred HHHhhhhhhhHhhcCceEEeeEEEEEEEeC--CCCEEEEEEcCCCCccceEEEehhhHhhCCCcEEEEECccchHHHHHH
Confidence 456789999999999999999999998742 257899999999999999999999999999999999999999999998
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHH-----HHHHhhhhhhchhhhhhhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLL-----EQVNAVMGELFASQVMDET 144 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~~ 144 (161)
....+...+..+|-|+||+||+.++ +.....++..++ +.+-+++-++.+.+.+.+.
T Consensus 120 N~YlAle~~LeIiPViNKIDLP~Ad----pervk~eIe~~iGid~~dav~~SAKtG~gI~~iLe~ 180 (603)
T COG0481 120 NVYLALENNLEIIPVLNKIDLPAAD----PERVKQEIEDIIGIDASDAVLVSAKTGIGIEDVLEA 180 (603)
T ss_pred HHHHHHHcCcEEEEeeecccCCCCC----HHHHHHHHHHHhCCCcchheeEecccCCCHHHHHHH
Confidence 8888888899999999999999876 344444444322 2334455555555555544
No 27
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.75 E-value=1.2e-17 Score=145.48 Aligned_cols=102 Identities=44% Similarity=0.667 Sum_probs=89.9
Q ss_pred cccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 5 ~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
..+++|.+++|+++|+|++....++.|.. .+++.++++|||||||.+|...+..+++.+|++|+|+|+++++..++..
T Consensus 40 ~~~~lD~~~~ErerGiTi~~~~v~~~~~~--~dg~~~~lnLiDTPGh~dF~~~v~~sl~~aD~aILVVDas~gv~~qt~~ 117 (600)
T PRK05433 40 KAQVLDSMDLERERGITIKAQAVRLNYKA--KDGETYILNLIDTPGHVDFSYEVSRSLAACEGALLVVDASQGVEAQTLA 117 (600)
T ss_pred ccccccCchHHhhcCCcccccEEEEEEEc--cCCCcEEEEEEECCCcHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHH
Confidence 35678889999999999999888888852 1256789999999999999999999999999999999999999989888
Q ss_pred HHHHHHHcCCCcEEEEECCcchhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+..+...++|+++|+||+|+...
T Consensus 118 ~~~~~~~~~lpiIvViNKiDl~~a 141 (600)
T PRK05433 118 NVYLALENDLEIIPVLNKIDLPAA 141 (600)
T ss_pred HHHHHHHCCCCEEEEEECCCCCcc
Confidence 888777789999999999998643
No 28
>PTZ00141 elongation factor 1- alpha; Provisional
Probab=99.75 E-value=1.2e-17 Score=141.23 Aligned_cols=93 Identities=31% Similarity=0.434 Sum_probs=84.6
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC-------C
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI-------C 79 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~-------~ 79 (161)
|++|..++|+++|+|++.....+.+. +++++|+|||||++|...+..++..+|++++|+|+..|+ .
T Consensus 58 ~~~D~~~~Er~rGiTid~~~~~~~~~-------~~~i~lIDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~e~~~~~~ 130 (446)
T PTZ00141 58 WVLDKLKAERERGITIDIALWKFETP-------KYYFTIIDAPGHRDFIKNMITGTSQADVAILVVASTAGEFEAGISKD 130 (446)
T ss_pred hhhcCChHHHhcCEeEEeeeEEEccC-------CeEEEEEECCChHHHHHHHHHhhhhcCEEEEEEEcCCCceecccCCC
Confidence 57899999999999999887777665 789999999999999999999999999999999999887 4
Q ss_pred hhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 80 AQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.++.+++..+...++|. |+|+||||+.
T Consensus 131 ~qT~eh~~~~~~~gi~~iiv~vNKmD~~ 158 (446)
T PTZ00141 131 GQTREHALLAFTLGVKQMIVCINKMDDK 158 (446)
T ss_pred ccHHHHHHHHHHcCCCeEEEEEEccccc
Confidence 79999999999999986 5899999954
No 29
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=99.75 E-value=6.7e-18 Score=140.34 Aligned_cols=96 Identities=41% Similarity=0.651 Sum_probs=91.4
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
|++|....|++|||||-++...+.|+ +++|+|+|||||.+|..++...++-+|++++++|+.+|+.+|+...+
T Consensus 41 RvMDSnDlEkERGITILaKnTav~~~-------~~~INIvDTPGHADFGGEVERvl~MVDgvlLlVDA~EGpMPQTrFVl 113 (603)
T COG1217 41 RVMDSNDLEKERGITILAKNTAVNYN-------GTRINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVL 113 (603)
T ss_pred hhcCccchhhhcCcEEEeccceeecC-------CeEEEEecCCCcCCccchhhhhhhhcceEEEEEEcccCCCCchhhhH
Confidence 56888899999999999999999999 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+.+.+.+.+.|+|+||+|.+.+.
T Consensus 114 kKAl~~gL~PIVVvNKiDrp~Ar 136 (603)
T COG1217 114 KKALALGLKPIVVINKIDRPDAR 136 (603)
T ss_pred HHHHHcCCCcEEEEeCCCCCCCC
Confidence 99999999999999999998764
No 30
>KOG0468|consensus
Probab=99.75 E-value=1.5e-17 Score=142.84 Aligned_cols=127 Identities=39% Similarity=0.744 Sum_probs=116.0
Q ss_pred cccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 5 ~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
..+++|.+..|++||++|+..-.++..... .++++-++|+|||||-.|..++..+++.+|++++|+|+.+|+...++.
T Consensus 163 ~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~--~~KS~l~nilDTPGHVnF~DE~ta~l~~sDgvVlvvDv~EGVmlntEr 240 (971)
T KOG0468|consen 163 DLRYTDTLFYEQERGCSIKSTPVTLVLSDS--KGKSYLMNILDTPGHVNFSDETTASLRLSDGVVLVVDVAEGVMLNTER 240 (971)
T ss_pred cccccccchhhHhcCceEeecceEEEEecC--cCceeeeeeecCCCcccchHHHHHHhhhcceEEEEEEcccCceeeHHH
Confidence 457899999999999999988887776532 377889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMG 133 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 133 (161)
+++.+...++|+++|+||+|+...+..+++..+|.+|..++++++..+.
T Consensus 241 ~ikhaiq~~~~i~vviNKiDRLilELkLPP~DAY~KLrHii~~iN~~is 289 (971)
T KOG0468|consen 241 IIKHAIQNRLPIVVVINKVDRLILELKLPPMDAYYKLRHIIDEINNLIS 289 (971)
T ss_pred HHHHHHhccCcEEEEEehhHHHHHHhcCChHHHHHHHHHHHHHhcchhh
Confidence 9999999999999999999999989999999999999999999985554
No 31
>TIGR01393 lepA GTP-binding protein LepA. LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function is unknown.
Probab=99.75 E-value=1.5e-17 Score=144.81 Aligned_cols=100 Identities=44% Similarity=0.679 Sum_probs=87.1
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
.+++|..++|+++|+|++....++.|... ++..++++|||||||++|...+..+++.+|++|+|+|++++++.++...
T Consensus 37 ~~~~D~~~~ErerGiTi~~~~v~~~~~~~--~g~~~~l~liDTPG~~dF~~~v~~~l~~aD~aILVvDat~g~~~qt~~~ 114 (595)
T TIGR01393 37 EQVLDSMDLERERGITIKAQAVRLNYKAK--DGETYVLNLIDTPGHVDFSYEVSRSLAACEGALLLVDAAQGIEAQTLAN 114 (595)
T ss_pred ccccCCChHHHhcCCCeeeeEEEEEEEcC--CCCEEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEecCCCCCCHhHHHH
Confidence 45667788899999999998888888511 1456899999999999999999999999999999999999999888888
Q ss_pred HHHHHHcCCCcEEEEECCcchh
Q psy2609 86 LKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 86 ~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
|..+...++|+++|+||+|+..
T Consensus 115 ~~~~~~~~ipiIiViNKiDl~~ 136 (595)
T TIGR01393 115 VYLALENDLEIIPVINKIDLPS 136 (595)
T ss_pred HHHHHHcCCCEEEEEECcCCCc
Confidence 7777778899999999999864
No 32
>PRK12736 elongation factor Tu; Reviewed
Probab=99.74 E-value=2.4e-17 Score=137.41 Aligned_cols=93 Identities=28% Similarity=0.444 Sum_probs=82.7
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK 87 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~ 87 (161)
++|++++|+++|+|++.....+... ..+++|||||||++|...+..++..+|++++|+|+.+|+..++.+++.
T Consensus 49 ~~d~~~~E~~rg~T~~~~~~~~~~~-------~~~i~~iDtPGh~~f~~~~~~~~~~~d~~llVvd~~~g~~~~t~~~~~ 121 (394)
T PRK12736 49 SIDAAPEEKERGITINTAHVEYETE-------KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHIL 121 (394)
T ss_pred hhcCCHHHHhcCccEEEEeeEecCC-------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH
Confidence 5788999999999999765554333 679999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC-cEEEEECCcchh
Q psy2609 88 QAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 88 ~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
.+...++| +|+|+||+|+..
T Consensus 122 ~~~~~g~~~~IvviNK~D~~~ 142 (394)
T PRK12736 122 LARQVGVPYLVVFLNKVDLVD 142 (394)
T ss_pred HHHHcCCCEEEEEEEecCCcc
Confidence 99889999 468899999974
No 33
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.74 E-value=3.7e-17 Score=123.39 Aligned_cols=91 Identities=43% Similarity=0.693 Sum_probs=76.8
Q ss_pred CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH
Q psy2609 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQA 89 (161)
Q Consensus 10 D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~ 89 (161)
|..+.|..+|+|+......+.+. .+++.+|||||+++|...+..+++.+|++++|+|+++++..+...++..+
T Consensus 41 ~~~~~e~~~g~t~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~~~d~~ilV~d~~~~~~~~~~~~~~~~ 113 (194)
T cd01891 41 DSNDLERERGITILAKNTAVTYK-------DTKINIVDTPGHADFGGEVERVLSMVDGVLLLVDASEGPMPQTRFVLKKA 113 (194)
T ss_pred ccchhHHhcccccccceeEEEEC-------CEEEEEEECCCcHHHHHHHHHHHHhcCEEEEEEECCCCccHHHHHHHHHH
Confidence 33345777899888777777665 78999999999999999999999999999999999987767776666666
Q ss_pred HHcCCCcEEEEECCcchh
Q psy2609 90 WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 90 ~~~~~p~ilv~NK~Dl~~ 107 (161)
...++|+++|+||+|+..
T Consensus 114 ~~~~~p~iiv~NK~Dl~~ 131 (194)
T cd01891 114 LELGLKPIVVINKIDRPD 131 (194)
T ss_pred HHcCCCEEEEEECCCCCC
Confidence 667899999999999964
No 34
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=99.74 E-value=3.4e-17 Score=145.44 Aligned_cols=126 Identities=44% Similarity=0.749 Sum_probs=104.8
Q ss_pred ccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHH
Q psy2609 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83 (161)
Q Consensus 4 g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~ 83 (161)
|+++++|..++|+++|+|+.....++.+... ..+++++|||||||.+|...+..+++.+|++|+|+|+..|+..++.
T Consensus 52 ~~~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~---~~~~~i~liDTPG~~~f~~~~~~al~~aD~~llVvda~~g~~~~t~ 128 (720)
T TIGR00490 52 GQQLYLDFDEQEQERGITINAANVSMVHEYE---GNEYLINLIDTPGHVDFGGDVTRAMRAVDGAIVVVCAVEGVMPQTE 128 (720)
T ss_pred CceeecCCCHHHHhhcchhhcccceeEEeec---CCceEEEEEeCCCccccHHHHHHHHHhcCEEEEEEecCCCCCccHH
Confidence 4556678889999999999988776544211 4589999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhh
Q psy2609 84 VALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVM 132 (161)
Q Consensus 84 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (161)
.+++.+...++|+++|+||+|+...+......+.+..+......+...+
T Consensus 129 ~~~~~~~~~~~p~ivviNKiD~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (720)
T TIGR00490 129 TVLRQALKENVKPVLFINKVDRLINELKLTPQELQERFIKIITEVNKLI 177 (720)
T ss_pred HHHHHHHHcCCCEEEEEEChhcccchhcCCHHHHHHHHhhhhHHHHhhh
Confidence 9998888889999999999999877766666677777776665555554
No 35
>TIGR00484 EF-G translation elongation factor EF-G. After peptide bond formation, this elongation factor of bacteria and organelles catalyzes the translocation of the tRNA-mRNA complex, with its attached nascent polypeptide chain, from the A-site to the P-site of the ribosome. Every completed bacterial genome has at least one copy, but some species have additional EF-G-like proteins. The closest homolog to canonical (e.g. E. coli) EF-G in the spirochetes clusters as if it is derived from mitochondrial forms, while a more distant second copy is also present. Synechocystis PCC6803 has a few proteins more closely related to EF-G than to any other characterized protein. Two of these resemble E. coli EF-G more closely than does the best match from the spirochetes; it may be that both function as authentic EF-G.
Probab=99.74 E-value=5.8e-18 Score=149.73 Aligned_cols=96 Identities=38% Similarity=0.620 Sum_probs=89.5
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+++|+.+.|+++|+|++.....+.|. +++++||||||+.+|...+..+++.+|++++|+|+.+++..++..++
T Consensus 48 ~~~D~~~~e~~rgiti~~~~~~~~~~-------~~~i~liDTPG~~~~~~~~~~~l~~~D~~ilVvda~~g~~~~~~~~~ 120 (689)
T TIGR00484 48 ATMDWMEQEKERGITITSAATTVFWK-------GHRINIIDTPGHVDFTVEVERSLRVLDGAVAVLDAVGGVQPQSETVW 120 (689)
T ss_pred cccCCCHHHHhcCCCEecceEEEEEC-------CeEEEEEECCCCcchhHHHHHHHHHhCEEEEEEeCCCCCChhHHHHH
Confidence 66788899999999999999999998 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+...++|+++|+||+|+...+
T Consensus 121 ~~~~~~~~p~ivviNK~D~~~~~ 143 (689)
T TIGR00484 121 RQANRYEVPRIAFVNKMDKTGAN 143 (689)
T ss_pred HHHHHcCCCEEEEEECCCCCCCC
Confidence 98888899999999999998644
No 36
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=99.73 E-value=4.7e-17 Score=124.52 Aligned_cols=95 Identities=24% Similarity=0.334 Sum_probs=82.5
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
.+++|..+.|+++|+|++.....+.+. +.++.||||||+++|...+..+++.+|++|+|+|++.++..++...
T Consensus 49 ~~~~d~~~~e~~rg~T~~~~~~~~~~~-------~~~~~liDTpG~~~~~~~~~~~~~~ad~~llVvD~~~~~~~~~~~~ 121 (208)
T cd04166 49 ALLVDGLQAEREQGITIDVAYRYFSTP-------KRKFIIADTPGHEQYTRNMVTGASTADLAILLVDARKGVLEQTRRH 121 (208)
T ss_pred eeeccCChhhhcCCcCeecceeEEecC-------CceEEEEECCcHHHHHHHHHHhhhhCCEEEEEEECCCCccHhHHHH
Confidence 467899999999999999988888776 6799999999999999888999999999999999999888777777
Q ss_pred HHHHHHcCCC-cEEEEECCcchh
Q psy2609 86 LKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 86 ~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
+..+...++| +|+|+||+|+..
T Consensus 122 ~~~~~~~~~~~iIvviNK~D~~~ 144 (208)
T cd04166 122 SYILSLLGIRHVVVAVNKMDLVD 144 (208)
T ss_pred HHHHHHcCCCcEEEEEEchhccc
Confidence 7777666765 567899999864
No 37
>TIGR00485 EF-Tu translation elongation factor TU. This alignment models orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts, one of several GTP-binding translation factors found by the more general pfam model GTP_EFTU. The eukaryotic conterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this model. EF-Tu is one of the most abundant proteins in bacteria, as well as one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=99.73 E-value=3.6e-17 Score=136.27 Aligned_cols=95 Identities=28% Similarity=0.408 Sum_probs=83.3
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+.+|++++|+++|+|++.....+.+ ++.++.|||||||++|...+..++..+|++++|+|+.+|+..++.+++
T Consensus 48 ~~~d~~~~E~~rG~Ti~~~~~~~~~-------~~~~~~liDtpGh~~f~~~~~~~~~~~D~~ilVvda~~g~~~qt~e~l 120 (394)
T TIGR00485 48 DQIDNAPEEKARGITINTAHVEYET-------ENRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSATDGPMPQTREHI 120 (394)
T ss_pred ccccCCHHHHhcCcceeeEEEEEcC-------CCEEEEEEECCchHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 3578899999999999976555433 377999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcE-EEEECCcchhh
Q psy2609 87 KQAWLEKIQPI-LVLNKIDRLIL 108 (161)
Q Consensus 87 ~~~~~~~~p~i-lv~NK~Dl~~~ 108 (161)
..+...++|.+ +|+||+|+...
T Consensus 121 ~~~~~~gi~~iIvvvNK~Dl~~~ 143 (394)
T TIGR00485 121 LLARQVGVPYIVVFLNKCDMVDD 143 (394)
T ss_pred HHHHHcCCCEEEEEEEecccCCH
Confidence 99888899976 68999999753
No 38
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.73 E-value=8.9e-18 Score=121.93 Aligned_cols=101 Identities=27% Similarity=0.289 Sum_probs=79.1
Q ss_pred ccccccccCCch--------hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEe
Q psy2609 2 LCMVSSYMDSRK--------DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVD 73 (161)
Q Consensus 2 ~~g~~~~~D~~~--------~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd 73 (161)
+||||++++.+. .|..+++|++.....+.+. . ..++.+|||||+++|...+..+++.+|++++|+|
T Consensus 10 ~~GKssl~~~l~~~~~~~~~~~~~~~~t~~~~~~~~~~~-----~-~~~~~~~DtpG~~~~~~~~~~~~~~ad~ii~V~d 83 (164)
T cd04171 10 DHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLP-----S-GKRLGFIDVPGHEKFIKNMLAGAGGIDLVLLVVA 83 (164)
T ss_pred CCCHHHHHHHHhCcccccchhhhccCceEEeeeEEEEec-----C-CcEEEEEECCChHHHHHHHHhhhhcCCEEEEEEE
Confidence 689999976654 4556788887666555543 1 4689999999999999888899999999999999
Q ss_pred CCCCCChhHHHHHHHHHHcCC-CcEEEEECCcchhh
Q psy2609 74 CVEGICAQTQVALKQAWLEKI-QPILVLNKIDRLIL 108 (161)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~~ 108 (161)
++++...+....+..+...+. |+++|+||+|+...
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 119 (164)
T cd04171 84 ADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDE 119 (164)
T ss_pred CCCCccHhHHHHHHHHHHhCCCcEEEEEECccccCH
Confidence 988766666665555544555 89999999999753
No 39
>TIGR00503 prfC peptide chain release factor 3. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. More recently, RF-3 was shown to be active primarily at UGA stop codons in E. coli. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis PCC6803, and in Staphylococcus aureus.
Probab=99.73 E-value=6.7e-18 Score=145.10 Aligned_cols=96 Identities=29% Similarity=0.538 Sum_probs=88.4
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+++|+.+.|+++|+|+......+.|+ +++++|||||||.+|...+..+++.+|++|+|+|++.++..++..++
T Consensus 53 t~~D~~~~E~~rgisi~~~~~~~~~~-------~~~inliDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~~t~~l~ 125 (527)
T TIGR00503 53 AKSDWMEMEKQRGISITTSVMQFPYR-------DCLVNLLDTPGHEDFSEDTYRTLTAVDNCLMVIDAAKGVETRTRKLM 125 (527)
T ss_pred ccCCCCHHHHhcCCcEEEEEEEEeeC-------CeEEEEEECCChhhHHHHHHHHHHhCCEEEEEEECCCCCCHHHHHHH
Confidence 66899999999999999988888887 78999999999999999999999999999999999999998999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+.+...++|+++++||+|+...+
T Consensus 126 ~~~~~~~~PiivviNKiD~~~~~ 148 (527)
T TIGR00503 126 EVTRLRDTPIFTFMNKLDRDIRD 148 (527)
T ss_pred HHHHhcCCCEEEEEECccccCCC
Confidence 88888899999999999986543
No 40
>CHL00071 tufA elongation factor Tu
Probab=99.73 E-value=2.6e-17 Score=137.81 Aligned_cols=95 Identities=28% Similarity=0.409 Sum_probs=84.5
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK 87 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~ 87 (161)
.+|++++|+++|+|++.....+.+. +.++.|+|||||++|...+..++..+|++++|+|+..++..++.+++.
T Consensus 49 ~~d~~~~e~~rg~T~~~~~~~~~~~-------~~~~~~iDtPGh~~~~~~~~~~~~~~D~~ilVvda~~g~~~qt~~~~~ 121 (409)
T CHL00071 49 EIDSAPEEKARGITINTAHVEYETE-------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTKEHIL 121 (409)
T ss_pred cccCChhhhcCCEeEEccEEEEccC-------CeEEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCCcHHHHHHHH
Confidence 4688899999999999877665544 779999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCC-cEEEEECCcchhhh
Q psy2609 88 QAWLEKIQ-PILVLNKIDRLILE 109 (161)
Q Consensus 88 ~~~~~~~p-~ilv~NK~Dl~~~~ 109 (161)
.+...++| +|+|+||+|+...+
T Consensus 122 ~~~~~g~~~iIvvvNK~D~~~~~ 144 (409)
T CHL00071 122 LAKQVGVPNIVVFLNKEDQVDDE 144 (409)
T ss_pred HHHHcCCCEEEEEEEccCCCCHH
Confidence 99889999 56899999997533
No 41
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=99.73 E-value=3.6e-17 Score=139.16 Aligned_cols=94 Identities=26% Similarity=0.389 Sum_probs=83.2
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
|++|.+++|++||+|++.....+.+. .++++|||||||++|...+..+++.+|++++|+|+..|+..++.+++
T Consensus 80 ~~~D~~~eEr~rgiTid~~~~~~~~~-------~~~i~~iDTPGh~~f~~~~~~~l~~aD~allVVDa~~G~~~qt~~~~ 152 (474)
T PRK05124 80 LLVDGLQAEREQGITIDVAYRYFSTE-------KRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHS 152 (474)
T ss_pred hhccCChHHhhcCCCeEeeEEEeccC-------CcEEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCccccchHHH
Confidence 68999999999999999877766655 77999999999999999999999999999999999999988888888
Q ss_pred HHHHHcCC-CcEEEEECCcchh
Q psy2609 87 KQAWLEKI-QPILVLNKIDRLI 107 (161)
Q Consensus 87 ~~~~~~~~-p~ilv~NK~Dl~~ 107 (161)
..+...++ |+|+|+||+|+..
T Consensus 153 ~l~~~lg~~~iIvvvNKiD~~~ 174 (474)
T PRK05124 153 FIATLLGIKHLVVAVNKMDLVD 174 (474)
T ss_pred HHHHHhCCCceEEEEEeecccc
Confidence 77777665 4678999999974
No 42
>PLN03127 Elongation factor Tu; Provisional
Probab=99.73 E-value=4.8e-17 Score=137.49 Aligned_cols=93 Identities=27% Similarity=0.416 Sum_probs=83.4
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK 87 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~ 87 (161)
.+|+.++|+++|+|++.....+.+. +.++.|+|||||++|...+..++..+|++++|+|+.+++..++.+++.
T Consensus 98 ~~D~~~~E~~rGiTi~~~~~~~~~~-------~~~i~~iDtPGh~~f~~~~~~g~~~aD~allVVda~~g~~~qt~e~l~ 170 (447)
T PLN03127 98 EIDKAPEEKARGITIATAHVEYETA-------KRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHIL 170 (447)
T ss_pred cccCChhHhhcCceeeeeEEEEcCC-------CeEEEEEECCCccchHHHHHHHHhhCCEEEEEEECCCCCchhHHHHHH
Confidence 4788899999999999866655443 779999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCc-EEEEECCcchh
Q psy2609 88 QAWLEKIQP-ILVLNKIDRLI 107 (161)
Q Consensus 88 ~~~~~~~p~-ilv~NK~Dl~~ 107 (161)
.+...++|. |+++||+|+..
T Consensus 171 ~~~~~gip~iIvviNKiDlv~ 191 (447)
T PLN03127 171 LARQVGVPSLVVFLNKVDVVD 191 (447)
T ss_pred HHHHcCCCeEEEEEEeeccCC
Confidence 999999995 68899999975
No 43
>PLN03126 Elongation factor Tu; Provisional
Probab=99.72 E-value=5.9e-17 Score=137.84 Aligned_cols=95 Identities=26% Similarity=0.395 Sum_probs=84.6
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
.++|..++|+++|+|++.....+.+. +.+++|||||||++|...+..++..+|++++|+|+.+|+..++.+++
T Consensus 117 ~~~D~~~~Er~rGiTi~~~~~~~~~~-------~~~i~liDtPGh~~f~~~~~~g~~~aD~ailVVda~~G~~~qt~e~~ 189 (478)
T PLN03126 117 DEIDAAPEERARGITINTATVEYETE-------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSGADGPMPQTKEHI 189 (478)
T ss_pred ccccCChhHHhCCeeEEEEEEEEecC-------CcEEEEEECCCHHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHH
Confidence 34577788999999999877776655 67999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCC-cEEEEECCcchhh
Q psy2609 87 KQAWLEKIQ-PILVLNKIDRLIL 108 (161)
Q Consensus 87 ~~~~~~~~p-~ilv~NK~Dl~~~ 108 (161)
..+...++| +|+++||+|+...
T Consensus 190 ~~~~~~gi~~iIvvvNK~Dl~~~ 212 (478)
T PLN03126 190 LLAKQVGVPNMVVFLNKQDQVDD 212 (478)
T ss_pred HHHHHcCCCeEEEEEecccccCH
Confidence 999999999 5689999999753
No 44
>KOG0465|consensus
Probab=99.72 E-value=2.3e-18 Score=146.52 Aligned_cols=126 Identities=33% Similarity=0.479 Sum_probs=108.9
Q ss_pred ccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHH
Q psy2609 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83 (161)
Q Consensus 4 g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~ 83 (161)
|+...+|.++.|+++|||+......+.|. ++.+++||||||-+|.-++..+++.-|++|+|+|+..|++.|+.
T Consensus 74 ~~~a~md~m~~er~rgITiqSAAt~~~w~-------~~~iNiIDTPGHvDFT~EVeRALrVlDGaVlvl~aV~GVqsQt~ 146 (721)
T KOG0465|consen 74 GGGATMDSMELERQRGITIQSAATYFTWR-------DYRINIIDTPGHVDFTFEVERALRVLDGAVLVLDAVAGVESQTE 146 (721)
T ss_pred cCceeeehHHHHHhcCceeeeceeeeeec-------cceeEEecCCCceeEEEEehhhhhhccCeEEEEEcccceehhhH
Confidence 34567899999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHH--HHHHHHHhhhhhhc
Q psy2609 84 VALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLS--QLLEQVNAVMGELF 136 (161)
Q Consensus 84 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~ 136 (161)
..|+++.+.++|.|.++||||+..++..-...+.+.++. .++-|+|+...+.|
T Consensus 147 tV~rQ~~ry~vP~i~FiNKmDRmGa~~~~~l~~i~~kl~~~~a~vqiPig~e~~f 201 (721)
T KOG0465|consen 147 TVWRQMKRYNVPRICFINKMDRMGASPFRTLNQIRTKLNHKPAVVQIPIGSESNF 201 (721)
T ss_pred HHHHHHHhcCCCeEEEEehhhhcCCChHHHHHHHHhhcCCchheeEccccccccc
Confidence 999999999999999999999988775444455555555 34556666665544
No 45
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=99.72 E-value=5.5e-17 Score=136.29 Aligned_cols=95 Identities=31% Similarity=0.475 Sum_probs=84.1
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC--CCChhHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE--GICAQTQ 83 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~--~~~~~~~ 83 (161)
+|++|..++|+++|+|++.....+.+. +++++|||||||++|...+..+++.+|++++|+|+++ ++..++.
T Consensus 56 ~~~~D~~~~Er~rG~T~d~~~~~~~~~-------~~~i~liDtpG~~~~~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~~ 128 (425)
T PRK12317 56 AWVMDRLKEERERGVTIDLAHKKFETD-------KYYFTIVDCPGHRDFVKNMITGASQADAAVLVVAADDAGGVMPQTR 128 (425)
T ss_pred hhhhccCHhHhhcCccceeeeEEEecC-------CeEEEEEECCCcccchhhHhhchhcCCEEEEEEEcccCCCCCcchH
Confidence 467899999999999999988877765 7899999999999999988888999999999999998 8888888
Q ss_pred HHHHHHHHcCC-CcEEEEECCcchh
Q psy2609 84 VALKQAWLEKI-QPILVLNKIDRLI 107 (161)
Q Consensus 84 ~~~~~~~~~~~-p~ilv~NK~Dl~~ 107 (161)
+++..+...++ |+++|+||+|+..
T Consensus 129 ~~~~~~~~~~~~~iivviNK~Dl~~ 153 (425)
T PRK12317 129 EHVFLARTLGINQLIVAINKMDAVN 153 (425)
T ss_pred HHHHHHHHcCCCeEEEEEEcccccc
Confidence 88877777776 4788999999975
No 46
>PRK10512 selenocysteinyl-tRNA-specific translation factor; Provisional
Probab=99.71 E-value=5.1e-17 Score=141.87 Aligned_cols=136 Identities=22% Similarity=0.262 Sum_probs=100.1
Q ss_pred cccccccc--------CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEe
Q psy2609 2 LCMVSSYM--------DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVD 73 (161)
Q Consensus 2 ~~g~~~~~--------D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd 73 (161)
++|||+++ |.+++|+++|+|++..+..+... ++..+.|||||||++|.+.+..++..+|++++|+|
T Consensus 10 dhGKTtLi~aLtg~~~dr~~eE~~rGiTI~l~~~~~~~~------~g~~i~~IDtPGhe~fi~~m~~g~~~~D~~lLVVd 83 (614)
T PRK10512 10 DHGKTTLLQAITGVNADRLPEEKKRGMTIDLGYAYWPQP------DGRVLGFIDVPGHEKFLSNMLAGVGGIDHALLVVA 83 (614)
T ss_pred CCCHHHHHHHHhCCCCccchhcccCCceEEeeeEEEecC------CCcEEEEEECCCHHHHHHHHHHHhhcCCEEEEEEE
Confidence 57888774 56678999999998765554332 24578999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHcCCCc-EEEEECCcchhhhhcCChHHHHHhHHHHH--------HHHHhhhhhhchhhhhhhh
Q psy2609 74 CVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRLILEMKLSPLDIYVHLSQLL--------EQVNAVMGELFASQVMDET 144 (161)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~--------~~~~~~~~~~~~~~~~~~~ 144 (161)
+++++.+++.+++..+...++|. |+|+||+|+...+. ......++..++ ..+|+++..+.+.+.+.+.
T Consensus 84 a~eg~~~qT~ehl~il~~lgi~~iIVVlNKiDlv~~~~---~~~v~~ei~~~l~~~~~~~~~ii~VSA~tG~gI~~L~~~ 160 (614)
T PRK10512 84 CDDGVMAQTREHLAILQLTGNPMLTVALTKADRVDEAR---IAEVRRQVKAVLREYGFAEAKLFVTAATEGRGIDALREH 160 (614)
T ss_pred CCCCCcHHHHHHHHHHHHcCCCeEEEEEECCccCCHHH---HHHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCHHHHHH
Confidence 99999999999998888888885 68999999975431 111222233222 2345555555566665555
Q ss_pred hc
Q psy2609 145 AV 146 (161)
Q Consensus 145 ~~ 146 (161)
=.
T Consensus 161 L~ 162 (614)
T PRK10512 161 LL 162 (614)
T ss_pred HH
Confidence 33
No 47
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.71 E-value=5.5e-17 Score=122.31 Aligned_cols=107 Identities=32% Similarity=0.383 Sum_probs=84.1
Q ss_pred cccccccc------------CCchhHHHcCCccccceEEEEeecCC-------CCCCceeEEEEeCCCchhhHHHHHHHH
Q psy2609 2 LCMVSSYM------------DSRKDEQERGITMKSSSISLYYKDNK-------DTPEEYLINLIDSPGHVDFSSEVSTAV 62 (161)
Q Consensus 2 ~~g~~~~~------------D~~~~E~~~giti~~~~~~~~~~~~~-------~~~~~~~i~iiDTpG~~~~~~~~~~~l 62 (161)
++|||+++ |....|+++|+|++....++.+.... ..++.+++++|||||+..+......+.
T Consensus 10 ~~GKstLi~~l~~~~~~~~~~~~~~e~~~g~T~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~DtpG~~~~~~~~~~~~ 89 (192)
T cd01889 10 DSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHASLIRTIIGGA 89 (192)
T ss_pred CCCHHHHHHHHHhccchhhhccCHHHHHcCCeeeecceEEEecccccccccccccccCceEEEEECCCcHHHHHHHHHHH
Confidence 56777664 45567999999999888777765211 123478999999999998888888888
Q ss_pred HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 63 RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 63 ~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+.+|++++|+|+..+...++...+......++|+++|+||+|+...
T Consensus 90 ~~~d~vi~VvD~~~~~~~~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 135 (192)
T cd01889 90 QIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPE 135 (192)
T ss_pred hhCCEEEEEEECCCCccHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 8999999999999888777766665555568899999999999743
No 48
>PRK10218 GTP-binding protein; Provisional
Probab=99.71 E-value=7.4e-17 Score=140.47 Aligned_cols=96 Identities=38% Similarity=0.660 Sum_probs=88.5
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
|++|..+.|+++|+|+......+.|. ++++++||||||.+|...+..+++.+|++|+|+|+.+++..++..++
T Consensus 41 ~v~D~~~~E~erGiTi~~~~~~i~~~-------~~~inliDTPG~~df~~~v~~~l~~aDg~ILVVDa~~G~~~qt~~~l 113 (607)
T PRK10218 41 RVMDSNDLEKERGITILAKNTAIKWN-------DYRINIVDTPGHADFGGEVERVMSMVDSVLLVVDAFDGPMPQTRFVT 113 (607)
T ss_pred eeeccccccccCceEEEEEEEEEecC-------CEEEEEEECCCcchhHHHHHHHHHhCCEEEEEEecccCccHHHHHHH
Confidence 66788888999999999988888887 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+...++|.++|+||+|+....
T Consensus 114 ~~a~~~gip~IVviNKiD~~~a~ 136 (607)
T PRK10218 114 KKAFAYGLKPIVVINKVDRPGAR 136 (607)
T ss_pred HHHHHcCCCEEEEEECcCCCCCc
Confidence 98888999999999999997543
No 49
>TIGR00475 selB selenocysteine-specific elongation factor SelB. In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes the elongation factor SelB, a close homolog rf EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This model does not find an equivalent protein for eukaryotes.
Probab=99.70 E-value=8.6e-17 Score=139.79 Aligned_cols=101 Identities=30% Similarity=0.375 Sum_probs=88.6
Q ss_pred cccccccc--------CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEe
Q psy2609 2 LCMVSSYM--------DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVD 73 (161)
Q Consensus 2 ~~g~~~~~--------D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd 73 (161)
++|||+++ |.+++|+++|+|++.....+.+. ++.+.|||||||++|...+..++.++|++++|+|
T Consensus 10 d~GKTTLi~aLtg~~~d~~~eE~~rGiTid~~~~~~~~~-------~~~v~~iDtPGhe~f~~~~~~g~~~aD~aILVVD 82 (581)
T TIGR00475 10 DHGKTTLLKALTGIAADRLPEEKKRGMTIDLGFAYFPLP-------DYRLGFIDVPGHEKFISNAIAGGGGIDAALLVVD 82 (581)
T ss_pred CCCHHHHHHHHhCccCcCChhHhcCCceEEeEEEEEEeC-------CEEEEEEECCCHHHHHHHHHhhhccCCEEEEEEE
Confidence 68888885 45578999999999877766665 5899999999999999999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHcCCC-cEEEEECCcchhhh
Q psy2609 74 CVEGICAQTQVALKQAWLEKIQ-PILVLNKIDRLILE 109 (161)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~ 109 (161)
+++++.+++.+++..+...++| +++|+||+|+...+
T Consensus 83 a~~G~~~qT~ehl~il~~lgi~~iIVVlNK~Dlv~~~ 119 (581)
T TIGR00475 83 ADEGVMTQTGEHLAVLDLLGIPHTIVVITKADRVNEE 119 (581)
T ss_pred CCCCCcHHHHHHHHHHHHcCCCeEEEEEECCCCCCHH
Confidence 9999989999888888888999 89999999997543
No 50
>PRK12735 elongation factor Tu; Reviewed
Probab=99.70 E-value=1.8e-16 Score=132.28 Aligned_cols=93 Identities=29% Similarity=0.419 Sum_probs=81.9
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK 87 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~ 87 (161)
.+|++++|+++|+|++.....+.+. +.+++|+|||||++|...+..++..+|++++|+|+.+++..++.+++.
T Consensus 49 ~~d~~~~E~~rGiT~~~~~~~~~~~-------~~~i~~iDtPGh~~f~~~~~~~~~~aD~~llVvda~~g~~~qt~e~l~ 121 (396)
T PRK12735 49 QIDNAPEEKARGITINTSHVEYETA-------NRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121 (396)
T ss_pred hccCChhHHhcCceEEEeeeEEcCC-------CcEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchhHHHHHH
Confidence 5688899999999999765554433 679999999999999999999999999999999999999999999998
Q ss_pred HHHHcCCCcE-EEEECCcchh
Q psy2609 88 QAWLEKIQPI-LVLNKIDRLI 107 (161)
Q Consensus 88 ~~~~~~~p~i-lv~NK~Dl~~ 107 (161)
.+...++|.+ +|+||+|+..
T Consensus 122 ~~~~~gi~~iivvvNK~Dl~~ 142 (396)
T PRK12735 122 LARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHcCCCeEEEEEEecCCcc
Confidence 8888899976 5799999974
No 51
>PRK00049 elongation factor Tu; Reviewed
Probab=99.70 E-value=1.9e-16 Score=132.08 Aligned_cols=93 Identities=28% Similarity=0.419 Sum_probs=82.9
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK 87 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~ 87 (161)
.+|+.++|+++|+|++.....+.+. +.++.|+|||||++|...+..++..+|++++|+|+..++..++.+++.
T Consensus 49 ~~d~~~~E~~rg~Ti~~~~~~~~~~-------~~~i~~iDtPG~~~f~~~~~~~~~~aD~~llVVDa~~g~~~qt~~~~~ 121 (396)
T PRK00049 49 QIDKAPEEKARGITINTAHVEYETE-------KRHYAHVDCPGHADYVKNMITGAAQMDGAILVVSAADGPMPQTREHIL 121 (396)
T ss_pred hccCChHHHhcCeEEeeeEEEEcCC-------CeEEEEEECCCHHHHHHHHHhhhccCCEEEEEEECCCCCchHHHHHHH
Confidence 5788899999999999775554433 779999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCcE-EEEECCcchh
Q psy2609 88 QAWLEKIQPI-LVLNKIDRLI 107 (161)
Q Consensus 88 ~~~~~~~p~i-lv~NK~Dl~~ 107 (161)
.+...++|.+ +++||+|+..
T Consensus 122 ~~~~~g~p~iiVvvNK~D~~~ 142 (396)
T PRK00049 122 LARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred HHHHcCCCEEEEEEeecCCcc
Confidence 9988999986 5899999974
No 52
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=99.69 E-value=1.5e-16 Score=134.62 Aligned_cols=140 Identities=19% Similarity=0.183 Sum_probs=99.4
Q ss_pred cccccc--------cCCchhHHHcCCccccceEEEEeecC-----------CCCC---------------CceeEEEEeC
Q psy2609 3 CMVSSY--------MDSRKDEQERGITMKSSSISLYYKDN-----------KDTP---------------EEYLINLIDS 48 (161)
Q Consensus 3 ~g~~~~--------~D~~~~E~~~giti~~~~~~~~~~~~-----------~~~~---------------~~~~i~iiDT 48 (161)
.|||++ .|++++|.+||+|++..+..+.+... .+.+ ...++.|+||
T Consensus 45 hGKTtLv~aLtg~~~~r~~~E~~rGiTi~lGfa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~IDt 124 (460)
T PTZ00327 45 HGKSTVVKALSGVKTVRFKREKVRNITIKLGYANAKIYKCPKCPRPTCYQSYGSSKPDNPPCPGCGHKMTLKRHVSFVDC 124 (460)
T ss_pred CCHHHHHHHHhCCCcccchhhHHhCCchhccccccccccCcccCCcccccccCCCcccccccccccccccccceEeeeeC
Confidence 567766 37889999999999987776532000 0000 0247999999
Q ss_pred CCchhhHHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCC-cEEEEECCcchhhhhcCChHHHHHhHHHHH-
Q psy2609 49 PGHVDFSSEVSTAVRLCDGTIIVVDCVEG-ICAQTQVALKQAWLEKIQ-PILVLNKIDRLILEMKLSPLDIYVHLSQLL- 125 (161)
Q Consensus 49 pG~~~~~~~~~~~l~~~d~~ilVvd~~~~-~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~- 125 (161)
|||++|.+.+..++..+|++++|+|+.++ +..++.+++..+...++| +|+|+||+|+...+. ..+.+.++..++
T Consensus 125 PGH~~fi~~m~~g~~~~D~alLVVda~~g~~~~qT~ehl~i~~~lgi~~iIVvlNKiDlv~~~~---~~~~~~ei~~~l~ 201 (460)
T PTZ00327 125 PGHDILMATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLVKEAQ---AQDQYEEIRNFVK 201 (460)
T ss_pred CCHHHHHHHHHHHHhhCCEEEEEEECCCCccchhhHHHHHHHHHcCCCcEEEEEecccccCHHH---HHHHHHHHHHHHH
Confidence 99999999999999999999999999986 688888888877777776 578999999975432 223333333332
Q ss_pred -------HHHHhhhhhhchhhhhhhhh
Q psy2609 126 -------EQVNAVMGELFASQVMDETA 145 (161)
Q Consensus 126 -------~~~~~~~~~~~~~~~~~~~~ 145 (161)
..+|+++...-+.+.|.+.=
T Consensus 202 ~~~~~~~~iipVSA~~G~nI~~Ll~~L 228 (460)
T PTZ00327 202 GTIADNAPIIPISAQLKYNIDVVLEYI 228 (460)
T ss_pred hhccCCCeEEEeeCCCCCCHHHHHHHH
Confidence 23555655555666665553
No 53
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.69 E-value=7.3e-17 Score=123.06 Aligned_cols=106 Identities=24% Similarity=0.233 Sum_probs=82.6
Q ss_pred cccccc--------cCCchhHHHcCCccccceEEEEeecC--------------------------CCCCCceeEEEEeC
Q psy2609 3 CMVSSY--------MDSRKDEQERGITMKSSSISLYYKDN--------------------------KDTPEEYLINLIDS 48 (161)
Q Consensus 3 ~g~~~~--------~D~~~~E~~~giti~~~~~~~~~~~~--------------------------~~~~~~~~i~iiDT 48 (161)
+|||++ .|..++|.++|+|+......+.|... +......+++||||
T Consensus 11 ~GKttL~~~l~~~~~~~~~~e~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~iDt 90 (203)
T cd01888 11 HGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETKLVRHVSFVDC 90 (203)
T ss_pred CCHHHHHHHHhCCCCCCCCeeEEcCCceeecccccccccccCcCCCCccccccccccccccccccCCccccccEEEEEEC
Confidence 677775 36789999999999988777776400 00012378999999
Q ss_pred CCchhhHHHHHHHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCC-CcEEEEECCcchhh
Q psy2609 49 PGHVDFSSEVSTAVRLCDGTIIVVDCVEG-ICAQTQVALKQAWLEKI-QPILVLNKIDRLIL 108 (161)
Q Consensus 49 pG~~~~~~~~~~~l~~~d~~ilVvd~~~~-~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~~ 108 (161)
|||++|...+..++..+|++++|+|++++ ...++...+..+...++ |+++|+||+|+...
T Consensus 91 PG~~~~~~~~~~~~~~~D~~llVvd~~~~~~~~~t~~~l~~~~~~~~~~iiivvNK~Dl~~~ 152 (203)
T cd01888 91 PGHEILMATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE 152 (203)
T ss_pred CChHHHHHHHHHhhhcCCEEEEEEECCCCCCCcchHHHHHHHHHcCCCcEEEEEEchhccCH
Confidence 99999999999999999999999999974 55666667666655555 57889999999753
No 54
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.69 E-value=4.3e-17 Score=145.08 Aligned_cols=100 Identities=24% Similarity=0.317 Sum_probs=88.0
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..+|+|.......+.|. +++++|||||||++|..++..+++.+|++|+|+|+++
T Consensus 300 d~GKTSLl~~Lr~~~v~~~e~~GIT~~iga~~v~~~-------~~~ItfiDTPGhe~F~~m~~rga~~aDiaILVVdAdd 372 (787)
T PRK05306 300 DHGKTSLLDAIRKTNVAAGEAGGITQHIGAYQVETN-------GGKITFLDTPGHEAFTAMRARGAQVTDIVVLVVAADD 372 (787)
T ss_pred CCCHHHHHHHHHhCCccccccCceeeeccEEEEEEC-------CEEEEEEECCCCccchhHHHhhhhhCCEEEEEEECCC
Confidence 689999998763 3445788888877777776 5789999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++..++.+.+..+...++|+|+|+||+|+...
T Consensus 373 Gv~~qT~e~i~~a~~~~vPiIVviNKiDl~~a 404 (787)
T PRK05306 373 GVMPQTIEAINHAKAAGVPIIVAINKIDKPGA 404 (787)
T ss_pred CCCHhHHHHHHHHHhcCCcEEEEEECcccccc
Confidence 99999999999888899999999999999653
No 55
>COG1159 Era GTPase [General function prediction only]
Probab=99.69 E-value=2e-17 Score=131.19 Aligned_cols=136 Identities=21% Similarity=0.159 Sum_probs=105.5
Q ss_pred ccccccccCCchhHHH------cCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQE------RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~------~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~ 67 (161)
|+||+|+++.+-.++- +..|+..... .+. .++.|++|+||||.++ +...+..++..+|+
T Consensus 16 NvGKSTLlN~l~G~KisIvS~k~QTTR~~I~G--I~t-----~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~sl~dvDl 88 (298)
T COG1159 16 NVGKSTLLNALVGQKISIVSPKPQTTRNRIRG--IVT-----TDNAQIIFVDTPGIHKPKHALGELMNKAARSALKDVDL 88 (298)
T ss_pred CCcHHHHHHHHhcCceEeecCCcchhhhheeE--EEE-----cCCceEEEEeCCCCCCcchHHHHHHHHHHHHHhccCcE
Confidence 8999999998876653 3333332222 122 4488999999999753 67789999999999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhhh-cCChHHHHHhHHHHHHHHHhhhhhhchhhhhhhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEM-KLSPLDIYVHLSQLLEQVNAVMGELFASQVMDET 144 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
++||+|+++++...++.++..++..+.|+++++||+|+...+. .....+.+.....+.+.+|+++...-+.+.+.+.
T Consensus 89 ilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~L~~~ 166 (298)
T COG1159 89 ILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDTLLEI 166 (298)
T ss_pred EEEEEeccccCCccHHHHHHHHhhcCCCeEEEEEccccCCcHHHHHHHHHHHHhhCCcceEEEeeccccCCHHHHHHH
Confidence 9999999999999999999988887889999999999887654 2344555555566778899999888888877664
No 56
>TIGR03680 eif2g_arch translation initiation factor 2 subunit gamma. eIF-2 functions in the early steps of protein synthesis by forming a ternary complex with GTP and initiator tRNA.
Probab=99.68 E-value=2.1e-16 Score=132.24 Aligned_cols=107 Identities=21% Similarity=0.278 Sum_probs=84.7
Q ss_pred cccccccc--------CCchhHHHcCCccccceEEEEeecC----------CC---CC------CceeEEEEeCCCchhh
Q psy2609 2 LCMVSSYM--------DSRKDEQERGITMKSSSISLYYKDN----------KD---TP------EEYLINLIDSPGHVDF 54 (161)
Q Consensus 2 ~~g~~~~~--------D~~~~E~~~giti~~~~~~~~~~~~----------~~---~~------~~~~i~iiDTpG~~~~ 54 (161)
++|||+++ |.+++|+++|+|++.....+.+... .. +. ....++|||||||++|
T Consensus 14 ~~GKSTL~~~Lt~~~~d~~~~e~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPGh~~f 93 (406)
T TIGR03680 14 DHGKTTLTKALTGVWTDTHSEELKRGISIRLGYADAEIYKCPECDGPECYTTEPVCPNCGSETELLRRVSFVDAPGHETL 93 (406)
T ss_pred CCCHHHHHHHHhCeecccCHhHHHcCceeEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHH
Confidence 57888775 8889999999999877655442200 00 00 2468999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCCC-cEEEEECCcchhh
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGI-CAQTQVALKQAWLEKIQ-PILVLNKIDRLIL 108 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~-~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~ 108 (161)
...+..++..+|++++|+|++++. ..++.+++..+...+++ +++|+||+|+...
T Consensus 94 ~~~~~~g~~~aD~aIlVVDa~~g~~~~qt~e~l~~l~~~gi~~iIVvvNK~Dl~~~ 149 (406)
T TIGR03680 94 MATMLSGAALMDGALLVIAANEPCPQPQTKEHLMALEIIGIKNIVIVQNKIDLVSK 149 (406)
T ss_pred HHHHHHHHHHCCEEEEEEECCCCccccchHHHHHHHHHcCCCeEEEEEEccccCCH
Confidence 999999999999999999999887 77888888777766654 7899999999754
No 57
>TIGR00483 EF-1_alpha translation elongation factor EF-1 alpha. This model represents the counterpart of bacterial EF-Tu for the Archaea (aEF-1 alpha) and Eukaryotes (eEF-1 alpha). The trusted cutoff is set fairly high so that incomplete sequences will score between suggested and trusted cutoff levels.
Probab=99.68 E-value=3.4e-16 Score=131.59 Aligned_cols=95 Identities=31% Similarity=0.457 Sum_probs=80.2
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC---CChhH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG---ICAQT 82 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~---~~~~~ 82 (161)
+|++|++++|+++|+|++.....+.+. +++++|||||||++|...+..+++.+|++++|+|++++ ...++
T Consensus 57 ~~~~d~~~~e~~rg~Tid~~~~~~~~~-------~~~i~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~~~~~~~~~t 129 (426)
T TIGR00483 57 AWVMDRLKEERERGVTIDVAHWKFETD-------KYEVTIVDCPGHRDFIKNMITGASQADAAVLVVAVGDGEFEVQPQT 129 (426)
T ss_pred hhhhccCHHHhhcCceEEEEEEEEccC-------CeEEEEEECCCHHHHHHHHHhhhhhCCEEEEEEECCCCCcccCCch
Confidence 477899999999999999887777665 78999999999999999999999999999999999988 55666
Q ss_pred HHHHHHHHHcCC-CcEEEEECCcchh
Q psy2609 83 QVALKQAWLEKI-QPILVLNKIDRLI 107 (161)
Q Consensus 83 ~~~~~~~~~~~~-p~ilv~NK~Dl~~ 107 (161)
.+++..+...++ |+|+|+||+|+..
T Consensus 130 ~~~~~~~~~~~~~~iIVviNK~Dl~~ 155 (426)
T TIGR00483 130 REHAFLARTLGINQLIVAINKMDSVN 155 (426)
T ss_pred HHHHHHHHHcCCCeEEEEEEChhccC
Confidence 666555555554 5778999999964
No 58
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.68 E-value=1.2e-16 Score=141.38 Aligned_cols=104 Identities=25% Similarity=0.348 Sum_probs=88.4
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..+|+|.......+.+... +..+.++|||||||+.|..++..+++.+|++|+|+|+++
T Consensus 254 dvGKTSLld~L~~~~~~~~e~~GiTq~i~~~~v~~~~~---~~~~kItfiDTPGhe~F~~mr~rg~~~aDiaILVVDA~d 330 (742)
T CHL00189 254 DHGKTTLLDKIRKTQIAQKEAGGITQKIGAYEVEFEYK---DENQKIVFLDTPGHEAFSSMRSRGANVTDIAILIIAADD 330 (742)
T ss_pred CCCHHHHHHHHHhccCccccCCccccccceEEEEEEec---CCceEEEEEECCcHHHHHHHHHHHHHHCCEEEEEEECcC
Confidence 6899999987753 33468888777666666421 346899999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++..++.+.+..+...++|+|+|+||+|+...
T Consensus 331 Gv~~QT~E~I~~~k~~~iPiIVViNKiDl~~~ 362 (742)
T CHL00189 331 GVKPQTIEAINYIQAANVPIIVAINKIDKANA 362 (742)
T ss_pred CCChhhHHHHHHHHhcCceEEEEEECCCcccc
Confidence 99999999999888889999999999999753
No 59
>TIGR00487 IF-2 translation initiation factor IF-2. This model discriminates eubacterial (and mitochondrial) translation initiation factor 2 (IF-2), encoded by the infB gene in bacteria, from similar proteins in the Archaea and Eukaryotes. In the bacteria and in organelles, the initiator tRNA is charged with N-formyl-Met instead of Met. This translation factor acts in delivering the initator tRNA to the ribosome. It is one of a number of GTP-binding translation factors recognized by the pfam model GTP_EFTU.
Probab=99.67 E-value=1.4e-16 Score=138.41 Aligned_cols=100 Identities=27% Similarity=0.385 Sum_probs=86.0
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..+|+|.......+.+.. ..++.|||||||++|...+..+++.+|++++|+|+++
T Consensus 97 d~GKTSLl~~l~~~~v~~~e~~GIT~~ig~~~v~~~~------~~~i~~iDTPGhe~F~~~r~rga~~aDiaILVVda~d 170 (587)
T TIGR00487 97 DHGKTSLLDSIRKTKVAQGEAGGITQHIGAYHVENED------GKMITFLDTPGHEAFTSMRARGAKVTDIVVLVVAADD 170 (587)
T ss_pred CCCHHHHHHHHHhCCcccccCCceeecceEEEEEECC------CcEEEEEECCCCcchhhHHHhhhccCCEEEEEEECCC
Confidence 6899999987643 4456888887777776641 2389999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++.+++.+.+..+...++|+++++||+|+..
T Consensus 171 gv~~qT~e~i~~~~~~~vPiIVviNKiDl~~ 201 (587)
T TIGR00487 171 GVMPQTIEAISHAKAANVPIIVAINKIDKPE 201 (587)
T ss_pred CCCHhHHHHHHHHHHcCCCEEEEEECccccc
Confidence 9999999999888888999999999999964
No 60
>KOG0464|consensus
Probab=99.66 E-value=5.7e-18 Score=139.56 Aligned_cols=124 Identities=35% Similarity=0.437 Sum_probs=106.0
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
++.|.+..|++||||+......+.|+ ++++++||||||.+|.-++...++.-|+++.|+|++.|+..|+...|
T Consensus 75 tvtdfla~erergitiqsaav~fdwk-------g~rinlidtpghvdf~leverclrvldgavav~dasagve~qtltvw 147 (753)
T KOG0464|consen 75 TVTDFLAIERERGITIQSAAVNFDWK-------GHRINLIDTPGHVDFRLEVERCLRVLDGAVAVFDASAGVEAQTLTVW 147 (753)
T ss_pred hHHHHHHHHHhcCceeeeeeeecccc-------cceEeeecCCCcceEEEEHHHHHHHhcCeEEEEeccCCcccceeeee
Confidence 56788999999999999999999999 89999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHH--HHHHHHHhhhhhhch
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLS--QLLEQVNAVMGELFA 137 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~ 137 (161)
++..+.++|.++++||||...+++........+++. .+.-++|+.....|+
T Consensus 148 rqadk~~ip~~~finkmdk~~anfe~avdsi~ekl~ak~l~l~lpi~eak~fn 200 (753)
T KOG0464|consen 148 RQADKFKIPAHCFINKMDKLAANFENAVDSIEEKLGAKALKLQLPIGEAKGFN 200 (753)
T ss_pred hhccccCCchhhhhhhhhhhhhhhhhHHHHHHHHhCCceEEEEeccccccccc
Confidence 999999999999999999987765433333333333 334456776666665
No 61
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=99.66 E-value=2.3e-15 Score=119.28 Aligned_cols=97 Identities=31% Similarity=0.433 Sum_probs=86.8
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
++++|..++|+++++|+......+.|. ++++++|||||+.+|...+..+++.+|++++|+|++.+...++..+
T Consensus 36 ~~~~d~~~~e~~r~~ti~~~~~~~~~~-------~~~i~liDtPG~~~f~~~~~~~l~~aD~~i~Vvd~~~g~~~~~~~~ 108 (268)
T cd04170 36 TTVSDYDPEEIKRKMSISTSVAPLEWK-------GHKINLIDTPGYADFVGETRAALRAADAALVVVSAQSGVEVGTEKL 108 (268)
T ss_pred cccCCCCHHHHhhcccccceeEEEEEC-------CEEEEEEECcCHHHHHHHHHHHHHHCCEEEEEEeCCCCCCHHHHHH
Confidence 455677888999999999888888887 7899999999999999999999999999999999999988888888
Q ss_pred HHHHHHcCCCcEEEEECCcchhhh
Q psy2609 86 LKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 86 ~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++.+...++|.++|+||+|+...+
T Consensus 109 ~~~~~~~~~p~iivvNK~D~~~~~ 132 (268)
T cd04170 109 WEFADEAGIPRIIFINKMDRERAD 132 (268)
T ss_pred HHHHHHcCCCEEEEEECCccCCCC
Confidence 888888899999999999987643
No 62
>PRK13351 elongation factor G; Reviewed
Probab=99.66 E-value=1.7e-15 Score=134.04 Aligned_cols=97 Identities=39% Similarity=0.616 Sum_probs=88.7
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
++++|..+.|+++|+|+.....++.|. +++++||||||+.+|...+..+++.+|++++|+|++.+...++..+
T Consensus 45 ~~~~d~~~~e~~r~~ti~~~~~~~~~~-------~~~i~liDtPG~~df~~~~~~~l~~aD~~ilVvd~~~~~~~~~~~~ 117 (687)
T PRK13351 45 TTVTDWMPQEQERGITIESAATSCDWD-------NHRINLIDTPGHIDFTGEVERSLRVLDGAVVVFDAVTGVQPQTETV 117 (687)
T ss_pred cccCCCCHHHHhcCCCcccceEEEEEC-------CEEEEEEECCCcHHHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHH
Confidence 355677888999999999999999987 7899999999999999999999999999999999999999889999
Q ss_pred HHHHHHcCCCcEEEEECCcchhhh
Q psy2609 86 LKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 86 ~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
|+.+...++|+++|+||+|+...+
T Consensus 118 ~~~~~~~~~p~iiviNK~D~~~~~ 141 (687)
T PRK13351 118 WRQADRYGIPRLIFINKMDRVGAD 141 (687)
T ss_pred HHHHHhcCCCEEEEEECCCCCCCC
Confidence 988888899999999999998654
No 63
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=99.66 E-value=9.7e-16 Score=134.49 Aligned_cols=95 Identities=27% Similarity=0.344 Sum_probs=84.1
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
+|++|.+++|+++|+|++.....+.+. +.+++|||||||++|...+..++..+|++++|+|+..|+..++.++
T Consensus 76 ~~~~d~~~~E~~rg~Tid~~~~~~~~~-------~~~~~liDtPG~~~f~~~~~~~~~~aD~~llVvda~~g~~~~t~e~ 148 (632)
T PRK05506 76 ALLVDGLAAEREQGITIDVAYRYFATP-------KRKFIVADTPGHEQYTRNMVTGASTADLAIILVDARKGVLTQTRRH 148 (632)
T ss_pred eeeccCCHHHHhCCcCceeeeeEEccC-------CceEEEEECCChHHHHHHHHHHHHhCCEEEEEEECCCCccccCHHH
Confidence 368899999999999999887777766 7799999999999999999999999999999999999998888888
Q ss_pred HHHHHHcCC-CcEEEEECCcchh
Q psy2609 86 LKQAWLEKI-QPILVLNKIDRLI 107 (161)
Q Consensus 86 ~~~~~~~~~-p~ilv~NK~Dl~~ 107 (161)
+..+...++ |+|+|+||+|+..
T Consensus 149 ~~~~~~~~~~~iivvvNK~D~~~ 171 (632)
T PRK05506 149 SFIASLLGIRHVVLAVNKMDLVD 171 (632)
T ss_pred HHHHHHhCCCeEEEEEEeccccc
Confidence 887777775 4678999999974
No 64
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.65 E-value=1.8e-15 Score=112.11 Aligned_cols=87 Identities=44% Similarity=0.660 Sum_probs=73.3
Q ss_pred hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC
Q psy2609 14 DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEK 93 (161)
Q Consensus 14 ~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~ 93 (161)
.+..+|+++......+.+. ...+.||||||+.++...+..+++.+|++++|+|+..+........+..+...+
T Consensus 42 ~~~~~~~~~~~~~~~~~~~-------~~~~~liDtpG~~~~~~~~~~~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~~~ 114 (189)
T cd00881 42 EERERGITIKSGVATFEWP-------DRRVNFIDTPGHEDFSSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGG 114 (189)
T ss_pred HHHHcCCCeecceEEEeeC-------CEEEEEEeCCCcHHHHHHHHHHHHhcCEEEEEEECCCCCcHHHHHHHHHHHHCC
Confidence 4566777777655555554 678999999999999999999999999999999999887777777777777789
Q ss_pred CCcEEEEECCcchh
Q psy2609 94 IQPILVLNKIDRLI 107 (161)
Q Consensus 94 ~p~ilv~NK~Dl~~ 107 (161)
+|+++|+||+|+..
T Consensus 115 ~~i~iv~nK~D~~~ 128 (189)
T cd00881 115 LPIIVAINKIDRVG 128 (189)
T ss_pred CCeEEEEECCCCcc
Confidence 99999999999975
No 65
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=99.64 E-value=1e-15 Score=118.72 Aligned_cols=102 Identities=25% Similarity=0.237 Sum_probs=83.0
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCC-----------------CCCCceeEEEEeCCCchhhHHHHHHHHH--hcCEE
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNK-----------------DTPEEYLINLIDSPGHVDFSSEVSTAVR--LCDGT 68 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~-----------------~~~~~~~i~iiDTpG~~~~~~~~~~~l~--~~d~~ 68 (161)
.++++++|.++|+|.......+.+.... ....++.++|+|||||++|.+.+..++. .+|++
T Consensus 34 ~~~~~~~E~~~g~t~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtpG~~~~~~~~~~~~~~~~~D~~ 113 (224)
T cd04165 34 NLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICEKSSKLVTFIDLAGHERYLKTTLFGLTGYAPDYA 113 (224)
T ss_pred ehhhhhhhhhcCchhhhhhhhcccCCCCceecCCCCccccccceeeeeCCcEEEEEECCCcHHHHHHHHHhhcccCCCEE
Confidence 4688899999999986655444333211 0122568999999999999999888886 68999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++|+|+..++..++..++.++...++|+++|+||+|+...+
T Consensus 114 llVvda~~g~~~~d~~~l~~l~~~~ip~ivvvNK~D~~~~~ 154 (224)
T cd04165 114 MLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAPAN 154 (224)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHcCCCEEEEEECccccCHH
Confidence 99999999999999999999999999999999999986543
No 66
>PRK12740 elongation factor G; Reviewed
Probab=99.63 E-value=4.6e-15 Score=130.95 Aligned_cols=97 Identities=40% Similarity=0.604 Sum_probs=89.0
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
.+++|.++.|+++|+|+......+.|. ++++++|||||+.+|...+..+++.+|++++|+|++.+...++..+
T Consensus 32 ~~~~d~~~~e~~rgiTi~~~~~~~~~~-------~~~i~liDtPG~~~~~~~~~~~l~~aD~vllvvd~~~~~~~~~~~~ 104 (668)
T PRK12740 32 TTTMDFMPEERERGISITSAATTCEWK-------GHKINLIDTPGHVDFTGEVERALRVLDGAVVVVCAVGGVEPQTETV 104 (668)
T ss_pred cccCCCChHHHhcCCCeeeceEEEEEC-------CEEEEEEECCCcHHHHHHHHHHHHHhCeEEEEEeCCCCcCHHHHHH
Confidence 477889999999999999999999987 7899999999999999999999999999999999999988888888
Q ss_pred HHHHHHcCCCcEEEEECCcchhhh
Q psy2609 86 LKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 86 ~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+..+...++|+++|+||+|+....
T Consensus 105 ~~~~~~~~~p~iiv~NK~D~~~~~ 128 (668)
T PRK12740 105 WRQAEKYGVPRIIFVNKMDRAGAD 128 (668)
T ss_pred HHHHHHcCCCEEEEEECCCCCCCC
Confidence 888888899999999999987543
No 67
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=99.63 E-value=7.6e-16 Score=124.57 Aligned_cols=95 Identities=26% Similarity=0.377 Sum_probs=84.1
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK 87 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~ 87 (161)
++|-+..|+|.||||+..+..|. +++.+|++.|||||+.|.+.+..+.+.||.+|+++|+..|+..|++.+.-
T Consensus 60 LvDGL~AEREQGITIDVAYRyFs-------T~KRkFIiADTPGHeQYTRNMaTGASTadlAIlLVDAR~Gvl~QTrRHs~ 132 (431)
T COG2895 60 LVDGLEAEREQGITIDVAYRYFS-------TEKRKFIIADTPGHEQYTRNMATGASTADLAILLVDARKGVLEQTRRHSF 132 (431)
T ss_pred hhhhhHHHHhcCceEEEEeeecc-------cccceEEEecCCcHHHHhhhhhcccccccEEEEEEecchhhHHHhHHHHH
Confidence 35899999999999997766554 34889999999999999999999999999999999999999999999988
Q ss_pred HHHHcCCCcE-EEEECCcchhhh
Q psy2609 88 QAWLEKIQPI-LVLNKIDRLILE 109 (161)
Q Consensus 88 ~~~~~~~p~i-lv~NK~Dl~~~~ 109 (161)
.+...+++.+ +++|||||++-+
T Consensus 133 I~sLLGIrhvvvAVNKmDLvdy~ 155 (431)
T COG2895 133 IASLLGIRHVVVAVNKMDLVDYS 155 (431)
T ss_pred HHHHhCCcEEEEEEeeecccccC
Confidence 7777888875 789999998644
No 68
>KOG0092|consensus
Probab=99.62 E-value=5.1e-16 Score=115.97 Aligned_cols=102 Identities=20% Similarity=0.124 Sum_probs=72.4
Q ss_pred Ccccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 1 MLCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 1 ~~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
+++||++++ |.|++-+++.|.-..-...+... +..+++.||||+|+|+|.+..+.||++|+++|+|||.+
T Consensus 14 ~~VGKSSlV~Rfvk~~F~e~~e~TIGaaF~tktv~~~-----~~~ikfeIWDTAGQERy~slapMYyRgA~AAivvYDit 88 (200)
T KOG0092|consen 14 SGVGKSSLVLRFVKDQFHENIEPTIGAAFLTKTVTVD-----DNTIKFEIWDTAGQERYHSLAPMYYRGANAAIVVYDIT 88 (200)
T ss_pred CCCCchhhhhhhhhCccccccccccccEEEEEEEEeC-----CcEEEEEEEEcCCcccccccccceecCCcEEEEEEecc
Confidence 468999885 66666555544443333334444 44789999999999999999999999999999999999
Q ss_pred CCCChhHHHHH-HHHHHc---CCCcEEEEECCcchh
Q psy2609 76 EGICAQTQVAL-KQAWLE---KIQPILVLNKIDRLI 107 (161)
Q Consensus 76 ~~~~~~~~~~~-~~~~~~---~~p~ilv~NK~Dl~~ 107 (161)
+.-+......| ..+... ++-+.||+||+||..
T Consensus 89 ~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~ 124 (200)
T KOG0092|consen 89 DEESFEKAKNWVKELQRQASPNIVIALVGNKADLLE 124 (200)
T ss_pred cHHHHHHHHHHHHHHHhhCCCCeEEEEecchhhhhh
Confidence 76555544433 222222 233457999999976
No 69
>KOG0094|consensus
Probab=99.61 E-value=1.9e-16 Score=118.62 Aligned_cols=103 Identities=20% Similarity=0.196 Sum_probs=77.3
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
..|||.++ |.|..-+...|.++.-..++.+. +..+.+++|||+|+|+|+..+++|++++.++|+|+|.++
T Consensus 32 sVGKTslItRf~yd~fd~~YqATIGiDFlskt~~l~-----d~~vrLQlWDTAGQERFrslipsY~Rds~vaviVyDit~ 106 (221)
T KOG0094|consen 32 SVGKTSLITRFMYDKFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSSVAVIVYDITD 106 (221)
T ss_pred ccchHHHHHHHHHhhhcccccceeeeEEEEEEEEEc-----CcEEEEEEEecccHHHHhhhhhhhccCCeEEEEEEeccc
Confidence 35777765 66666666677777666666666 668999999999999999999999999999999999985
Q ss_pred CCC-hhHHHHHHHHHHc----CCCcEEEEECCcchhhh
Q psy2609 77 GIC-AQTQVALKQAWLE----KIQPILVLNKIDRLILE 109 (161)
Q Consensus 77 ~~~-~~~~~~~~~~~~~----~~p~ilv~NK~Dl~~~~ 109 (161)
--+ .++..++.-+... ++-++||+||.||..+.
T Consensus 107 ~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkr 144 (221)
T KOG0094|consen 107 RNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKR 144 (221)
T ss_pred cchHHHHHHHHHHHHhccCCCceEEEEEcccccccchh
Confidence 433 3334444444433 34457899999998653
No 70
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=99.61 E-value=2.8e-15 Score=118.92 Aligned_cols=94 Identities=30% Similarity=0.462 Sum_probs=83.5
Q ss_pred cCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH
Q psy2609 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQ 88 (161)
Q Consensus 9 ~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~ 88 (161)
.|..|+|++|||||.+. ++.|. ..+..+-.+|||||.+|.+++..+..+.|++|+|+++++|+.+|+.+++-+
T Consensus 50 id~aPeEk~rGITInta--hveye-----t~~rhyahVDcPGHaDYvKNMItgAaqmDgAILVVsA~dGpmPqTrEHiLl 122 (394)
T COG0050 50 IDNAPEEKARGITINTA--HVEYE-----TANRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 122 (394)
T ss_pred hccCchHhhcCceeccc--eeEEe-----cCCceEEeccCCChHHHHHHHhhhHHhcCccEEEEEcCCCCCCcchhhhhh
Confidence 58899999999999865 55555 447899999999999999999999999999999999999999999999888
Q ss_pred HHHcCCCcE-EEEECCcchhhh
Q psy2609 89 AWLEKIQPI-LVLNKIDRLILE 109 (161)
Q Consensus 89 ~~~~~~p~i-lv~NK~Dl~~~~ 109 (161)
.+..++|.| +++||+|+++..
T Consensus 123 arqvGvp~ivvflnK~Dmvdd~ 144 (394)
T COG0050 123 ARQVGVPYIVVFLNKVDMVDDE 144 (394)
T ss_pred hhhcCCcEEEEEEecccccCcH
Confidence 888899875 679999998743
No 71
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=3e-15 Score=126.36 Aligned_cols=103 Identities=23% Similarity=0.309 Sum_probs=89.7
Q ss_pred cccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 3 CMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 3 ~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
-|||+++|....- ..-|||-....+.+.+.. ++...+.|+|||||+-|..+...+...+|+++||+++++|
T Consensus 16 HGKTtLLD~IR~t~Va~~EaGGITQhIGA~~v~~~~----~~~~~itFiDTPGHeAFt~mRaRGa~vtDIaILVVa~dDG 91 (509)
T COG0532 16 HGKTTLLDKIRKTNVAAGEAGGITQHIGAYQVPLDV----IKIPGITFIDTPGHEAFTAMRARGASVTDIAILVVAADDG 91 (509)
T ss_pred CCccchhhhHhcCccccccCCceeeEeeeEEEEecc----CCCceEEEEcCCcHHHHHHHHhcCCccccEEEEEEEccCC
Confidence 3899999887532 244889888888888751 1256899999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 78 ICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 78 ~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+.+|+.+.+..++..++|+++++||+|++..+
T Consensus 92 v~pQTiEAI~hak~a~vP~iVAiNKiDk~~~n 123 (509)
T COG0532 92 VMPQTIEAINHAKAAGVPIVVAINKIDKPEAN 123 (509)
T ss_pred cchhHHHHHHHHHHCCCCEEEEEecccCCCCC
Confidence 99999999999999999999999999998654
No 72
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.60 E-value=2.3e-15 Score=125.29 Aligned_cols=132 Identities=23% Similarity=0.137 Sum_probs=102.6
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh---------hHHHHHHHHHhcC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD---------FSSEVSTAVRLCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~---------~~~~~~~~l~~~d 66 (161)
|.||+++++++..++ .+|+|+|..+....|. ++.+.+|||+|.+. +..++..++..||
T Consensus 13 NVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~-------~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~eAD 85 (444)
T COG1160 13 NVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWL-------GREFILIDTGGLDDGDEDELQELIREQALIAIEEAD 85 (444)
T ss_pred CCcHHHHHHHHhCCeeeEeecCCCCccCCccceeEEc-------CceEEEEECCCCCcCCchHHHHHHHHHHHHHHHhCC
Confidence 789999999987654 5799999999999999 66799999999753 4567999999999
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhhhchhhhhhhh
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFASQVMDET 144 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
++|||+|+..|+++.++.+.++++..++|+|+|+||+|....+. ..-.+..| .+.+-+|+++..+-+.+.|.+.
T Consensus 86 vilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~---~~~efysl-G~g~~~~ISA~Hg~Gi~dLld~ 159 (444)
T COG1160 86 VILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEE---LAYEFYSL-GFGEPVPISAEHGRGIGDLLDA 159 (444)
T ss_pred EEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEEcccCchhhh---hHHHHHhc-CCCCceEeehhhccCHHHHHHH
Confidence 99999999999999999999999988899999999999864331 11111121 2344556666655555555443
No 73
>TIGR00436 era GTP-binding protein Era. Era is an essential GTPase in Escherichia coli and many other bacteria. It plays a role in ribosome biogenesis. Few bacteria lack this protein.
Probab=99.59 E-value=1.2e-15 Score=121.14 Aligned_cols=135 Identities=19% Similarity=0.143 Sum_probs=86.6
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~ 67 (161)
|||||++++.+..+. .++.|..... .+ +. ....++.||||||+.+ +...+..+++.+|+
T Consensus 10 nvGKSTLln~L~~~~~~~vs~~~~TTr~~i~-~i-~~-----~~~~qii~vDTPG~~~~~~~l~~~~~~~~~~~l~~aDv 82 (270)
T TIGR00436 10 NVGKSTLLNQLHGQKISITSPKAQTTRNRIS-GI-HT-----TGASQIIFIDTPGFHEKKHSLNRLMMKEARSAIGGVDL 82 (270)
T ss_pred CCCHHHHHHHHhCCcEeecCCCCCcccCcEE-EE-EE-----cCCcEEEEEECcCCCCCcchHHHHHHHHHHHHHhhCCE
Confidence 799999998886543 3345544221 11 22 2256899999999753 23346778899999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhhhchhhhhhhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFASQVMDET 144 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
+++|+|++...... ..++..+...+.|+++|+||+|+............+.....+.+.+|+++..+.+.+.+.+.
T Consensus 83 vl~VvD~~~~~~~~-~~i~~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~~~~~~~~v~~iSA~~g~gi~~L~~~ 158 (270)
T TIGR00436 83 ILFVVDSDQWNGDG-EFVLTKLQNLKRPVVLTRNKLDNKFKDKLLPLIDKYAILEDFKDIVPISALTGDNTSFLAAF 158 (270)
T ss_pred EEEEEECCCCCchH-HHHHHHHHhcCCCEEEEEECeeCCCHHHHHHHHHHHHhhcCCCceEEEecCCCCCHHHHHHH
Confidence 99999998765543 55566666778999999999999643321111111222112224567777777777666544
No 74
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.59 E-value=3.6e-15 Score=113.95 Aligned_cols=101 Identities=21% Similarity=0.179 Sum_probs=73.3
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++ +.+.++..++++.+.....+.+. ++.+++.+|||||+++|...+..+++++|++|+|+|+++
T Consensus 10 gVGKTSli~r~~~~~f~~~~~~Ti~~~~~~~~i~~~-----~~~v~l~iwDtaGqe~~~~l~~~y~~~ad~iIlVfDvtd 84 (202)
T cd04120 10 GVGKTSLMRRFTDDTFCEACKSGVGVDFKIKTVELR-----GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 84 (202)
T ss_pred CCCHHHHHHHHHhCCCCCcCCCcceeEEEEEEEEEC-----CEEEEEEEEeCCCchhhHHHHHHHhcCCCEEEEEEECcC
Confidence 57999886 44444445555555444445554 457899999999999999999999999999999999997
Q ss_pred CCChhHHHHH-HHHH---HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
.-+......| ..+. ..++|+++|+||+|+..
T Consensus 85 ~~Sf~~l~~w~~~i~~~~~~~~piilVgNK~DL~~ 119 (202)
T cd04120 85 KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCET 119 (202)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 5544443222 2222 24689999999999964
No 75
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=99.59 E-value=8.8e-15 Score=122.65 Aligned_cols=107 Identities=24% Similarity=0.282 Sum_probs=82.3
Q ss_pred ccccccc--------cCCchhHHHcCCccccceEEEEeecC-------CCC------------CCceeEEEEeCCCchhh
Q psy2609 2 LCMVSSY--------MDSRKDEQERGITMKSSSISLYYKDN-------KDT------------PEEYLINLIDSPGHVDF 54 (161)
Q Consensus 2 ~~g~~~~--------~D~~~~E~~~giti~~~~~~~~~~~~-------~~~------------~~~~~i~iiDTpG~~~~ 54 (161)
.+|||++ +|+.++|+++|+|++.....+.+..+ .+. ...++++|||||||++|
T Consensus 19 d~GKSTL~~~L~~~~~d~~~~E~~rg~Ti~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~liDtPG~~~f 98 (411)
T PRK04000 19 DHGKTTLVQALTGVWTDRHSEELKRGITIRLGYADATIRKCPDCEEPEAYTTEPKCPNCGSETELLRRVSFVDAPGHETL 98 (411)
T ss_pred CCCHHHHHHHhhCeecccCHhHHhcCcEEEecccccccccccccCccccccccccccccccccccccEEEEEECCCHHHH
Confidence 3567665 46778999999999877655444210 000 11368999999999999
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-CcEEEEECCcchhh
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGI-CAQTQVALKQAWLEKI-QPILVLNKIDRLIL 108 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~-~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~~ 108 (161)
...+..+...+|++++|+|++++. ..++..++..+...++ |+++|+||+|+...
T Consensus 99 ~~~~~~~~~~~D~~llVVDa~~~~~~~~t~~~l~~l~~~~i~~iiVVlNK~Dl~~~ 154 (411)
T PRK04000 99 MATMLSGAALMDGAILVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSK 154 (411)
T ss_pred HHHHHHHHhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEEeeccccc
Confidence 999999999999999999999887 6777777777766666 57899999999754
No 76
>KOG0458|consensus
Probab=99.59 E-value=6.3e-15 Score=125.19 Aligned_cols=112 Identities=29% Similarity=0.384 Sum_probs=91.2
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC-------C
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG-------I 78 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~-------~ 78 (161)
+|++|...+||+||+|++.....|.- ..+.++++|+|||.+|...+..+...||++++|+|++.+ +
T Consensus 227 awiLDeT~eERerGvTm~v~~~~fes-------~~~~~tliDaPGhkdFi~nmi~g~sqaD~avLvvd~s~~~FE~gfd~ 299 (603)
T KOG0458|consen 227 AWILDETKEERERGVTMDVKTTWFES-------KSKIVTLIDAPGHKDFIPNMISGASQADVAVLVVDASTGEFESGFDP 299 (603)
T ss_pred eEEeccchhhhhcceeEEeeeEEEec-------CceeEEEecCCCccccchhhhccccccceEEEEEECCcchhhhccCC
Confidence 57899999999999999987776653 388999999999999999999999999999999999844 3
Q ss_pred ChhHHHHHHHHHHcCCCc-EEEEECCcchhhhhcCChHHHHHhHHHHH
Q psy2609 79 CAQTQVALKQAWLEKIQP-ILVLNKIDRLILEMKLSPLDIYVHLSQLL 125 (161)
Q Consensus 79 ~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~ 125 (161)
..|+.++...++..++.- |+++||||+...... ...++...+..++
T Consensus 300 ~gQtrEha~llr~Lgi~qlivaiNKmD~V~Wsq~-RF~eIk~~l~~fL 346 (603)
T KOG0458|consen 300 GGQTREHALLLRSLGISQLIVAINKMDLVSWSQD-RFEEIKNKLSSFL 346 (603)
T ss_pred CCchHHHHHHHHHcCcceEEEEeecccccCccHH-HHHHHHHHHHHHH
Confidence 578899988888888775 678999999875421 1234444555555
No 77
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.58 E-value=1.5e-15 Score=111.24 Aligned_cols=102 Identities=15% Similarity=0.129 Sum_probs=71.9
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+ ..+..+.++.+.....+.+. +..+++.+|||||+++|...+..+++.+|++++|+|+++
T Consensus 13 ~~GKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~llv~d~~~ 87 (165)
T cd01864 13 NVGKTCVVQRFKSGTFSERQGNTIGVDFTMKTLEIE-----GKRVKLQIWDTAGQERFRTITQSYYRSANGAIIAYDITR 87 (165)
T ss_pred CCCHHHHHHHHhhCCCcccCCCccceEEEEEEEEEC-----CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECcC
Confidence 68999997544 33444444444433445454 445789999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHH---HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
..+..... ++..+. ..++|+++|+||+|+...
T Consensus 88 ~~s~~~~~~~~~~i~~~~~~~~p~ivv~nK~Dl~~~ 123 (165)
T cd01864 88 RSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQ 123 (165)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCcEEEEEECcccccc
Confidence 54433322 222222 247899999999999754
No 78
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.57 E-value=1.5e-14 Score=105.53 Aligned_cols=102 Identities=27% Similarity=0.312 Sum_probs=78.3
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+++|.......+.+.. .....+.+|||||++.+...+..+++.+|++++|+|+++
T Consensus 10 ~~GKtsli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~----~~~~~~~iiDtpG~~~~~~~~~~~~~~~d~il~v~d~~~ 85 (168)
T cd01887 10 DHGKTTLLDKIRKTNVAAGEAGGITQHIGAFEVPAEV----LKIPGITFIDTPGHEAFTNMRARGASLTDIAILVVAADD 85 (168)
T ss_pred CCCHHHHHHHHHhcccccccCCCeEEeeccEEEeccc----CCcceEEEEeCCCcHHHHHHHHHHHhhcCEEEEEEECCC
Confidence 689999987765433 22445444333333320 136789999999999999888899999999999999998
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+...+....+..+...++|+++|+||+|+..
T Consensus 86 ~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~ 116 (168)
T cd01887 86 GVMPQTIEAIKLAKAANVPFIVALNKIDKPN 116 (168)
T ss_pred CccHHHHHHHHHHHHcCCCEEEEEEceeccc
Confidence 7777777777777778999999999999864
No 79
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.56 E-value=1.3e-14 Score=104.35 Aligned_cols=101 Identities=23% Similarity=0.184 Sum_probs=76.1
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH--------HHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS--------EVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~--------~~~~~l~~~d~ 67 (161)
++|||++++.+... ..+++|.+.......+. ++.+.+|||||+..+.. .+..+++.+|+
T Consensus 7 ~~GKssl~~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 79 (157)
T cd01894 7 NVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWG-------GREFILIDTGGIEPDDEGISKEIREQAELAIEEADV 79 (157)
T ss_pred CCCHHHHHHHHhCCcEEeecCCCCceeCceeEEEEEC-------CeEEEEEECCCCCCchhHHHHHHHHHHHHHHHhCCE
Confidence 68999998776432 34455555444444444 57899999999977433 55677889999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+++|+|+..+.......+.+++...++|+++|+||+|+....
T Consensus 80 ii~v~d~~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~~~ 121 (157)
T cd01894 80 ILFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEE 121 (157)
T ss_pred EEEEEeccccCCccHHHHHHHHHhcCCCEEEEEECcccCChH
Confidence 999999987776666667777777789999999999997644
No 80
>KOG1145|consensus
Probab=99.56 E-value=1.1e-14 Score=123.29 Aligned_cols=110 Identities=24% Similarity=0.356 Sum_probs=93.7
Q ss_pred cccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 3 CMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 3 ~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
-|||+++|.+.... --|||.....+.+.... +.+++|+|||||.-|..+...+...+|.+++|+.+.+|
T Consensus 164 HGKTTLLD~lRks~VAA~E~GGITQhIGAF~V~~p~------G~~iTFLDTPGHaAF~aMRaRGA~vtDIvVLVVAadDG 237 (683)
T KOG1145|consen 164 HGKTTLLDALRKSSVAAGEAGGITQHIGAFTVTLPS------GKSITFLDTPGHAAFSAMRARGANVTDIVVLVVAADDG 237 (683)
T ss_pred CChhhHHHHHhhCceehhhcCCccceeceEEEecCC------CCEEEEecCCcHHHHHHHHhccCccccEEEEEEEccCC
Confidence 48999999986433 34899888888887652 47999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHH
Q psy2609 78 ICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLS 122 (161)
Q Consensus 78 ~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~ 122 (161)
+.+|+.+.+..++..++|+|+++||||.+.++ +...+.+|.
T Consensus 238 VmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~----pekv~~eL~ 278 (683)
T KOG1145|consen 238 VMPQTLEAIKHAKSANVPIVVAINKIDKPGAN----PEKVKRELL 278 (683)
T ss_pred ccHhHHHHHHHHHhcCCCEEEEEeccCCCCCC----HHHHHHHHH
Confidence 99999999999999999999999999988665 444444443
No 81
>PRK15494 era GTPase Era; Provisional
Probab=99.56 E-value=3.5e-15 Score=122.23 Aligned_cols=99 Identities=20% Similarity=0.214 Sum_probs=72.8
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~ 67 (161)
|+|||++++.+..+. .++.|++.....+.+. +.++.||||||+++ +...+..+++.+|+
T Consensus 62 nvGKSTLin~l~~~k~~ivs~k~~tTr~~~~~~~~~~-------~~qi~~~DTpG~~~~~~~l~~~~~r~~~~~l~~aDv 134 (339)
T PRK15494 62 NSGKSTLLNRIIGEKLSIVTPKVQTTRSIITGIITLK-------DTQVILYDTPGIFEPKGSLEKAMVRCAWSSLHSADL 134 (339)
T ss_pred CCCHHHHHHHHhCCceeeccCCCCCccCcEEEEEEeC-------CeEEEEEECCCcCCCcccHHHHHHHHHHHHhhhCCE
Confidence 799999998886554 2344544333333333 67999999999843 33345567889999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+++|+|+..+....+..++..+...+.|.++|+||+|+..
T Consensus 135 il~VvD~~~s~~~~~~~il~~l~~~~~p~IlViNKiDl~~ 174 (339)
T PRK15494 135 VLLIIDSLKSFDDITHNILDKLRSLNIVPIFLLNKIDIES 174 (339)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEEhhcCcc
Confidence 9999999887766666666666667889999999999864
No 82
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.55 E-value=6.4e-15 Score=125.39 Aligned_cols=99 Identities=20% Similarity=0.224 Sum_probs=81.0
Q ss_pred ccccccccCCchh------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCch--------hhHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKD------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV--------DFSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~--------~~~~~~~~~l~~~d~ 67 (161)
|+|||++++.+.. +..+|+|.+.....+.+. +.++.+|||||++ .+...+..+++.+|+
T Consensus 48 nvGKSSL~nrl~~~~~~~v~~~~gvT~d~~~~~~~~~-------~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~aD~ 120 (472)
T PRK03003 48 NVGKSTLVNRILGRREAVVEDVPGVTRDRVSYDAEWN-------GRRFTVVDTGGWEPDAKGLQASVAEQAEVAMRTADA 120 (472)
T ss_pred CCCHHHHHHHHhCcCcccccCCCCCCEeeEEEEEEEC-------CcEEEEEeCCCcCCcchhHHHHHHHHHHHHHHhCCE
Confidence 7999999877653 346788877666666665 5679999999976 355667889999999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+|+|+|++.+.+.....+...+...++|+++|+||+|+..
T Consensus 121 il~VvD~~~~~s~~~~~i~~~l~~~~~piilV~NK~Dl~~ 160 (472)
T PRK03003 121 VLFVVDATVGATATDEAVARVLRRSGKPVILAANKVDDER 160 (472)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCc
Confidence 9999999998877777777888888999999999999864
No 83
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.55 E-value=1.2e-14 Score=110.84 Aligned_cols=101 Identities=13% Similarity=0.096 Sum_probs=71.1
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++.++. .++.+.+..+.....+.+. ++.+.+.||||||+++|...+..+++++|++|+|+|++.
T Consensus 5 ~vGKTsLi~r~~~~~f~~~~~~Tig~~~~~~~~~~~-----~~~~~l~iwDt~G~e~~~~l~~~~~~~ad~~ilV~D~t~ 79 (200)
T smart00176 5 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-----RGPIRFNVWDTAGQEKFGGLRDGYYIQGQCAIIMFDVTA 79 (200)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-----CEEEEEEEEECCCchhhhhhhHHHhcCCCEEEEEEECCC
Confidence 579999875543 2333333333322333333 457899999999999999999999999999999999997
Q ss_pred CCChhHHHHH-HHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+......| ..+.. .++|++||+||+|+..
T Consensus 80 ~~S~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 113 (200)
T smart00176 80 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKD 113 (200)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 6544433323 22322 4789999999999853
No 84
>KOG0078|consensus
Probab=99.55 E-value=1.1e-14 Score=110.23 Aligned_cols=101 Identities=16% Similarity=0.098 Sum_probs=74.0
Q ss_pred ccccccccCCchhHHHc-----CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQER-----GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~-----giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+||+-++..+.++.-. .+.++.....+... +....+.+|||+|+++|...+.+|++.|+++++|||.+.
T Consensus 22 ~vGKt~~l~rf~d~~f~~~~~sTiGIDFk~kti~l~-----g~~i~lQiWDtaGQerf~ti~~sYyrgA~gi~LvyDitn 96 (207)
T KOG0078|consen 22 GVGKTCLLLRFSDDSFNTSFISTIGIDFKIKTIELD-----GKKIKLQIWDTAGQERFRTITTAYYRGAMGILLVYDITN 96 (207)
T ss_pred CCchhHhhhhhhhccCcCCccceEEEEEEEEEEEeC-----CeEEEEEEEEcccchhHHHHHHHHHhhcCeeEEEEEccc
Confidence 47888888777665533 33334333344444 678899999999999999999999999999999999996
Q ss_pred CCChhHHHHH-HHHH---HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
..+......| +.+. ..++|++||+||+|+..
T Consensus 97 e~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~ 131 (207)
T KOG0078|consen 97 EKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEE 131 (207)
T ss_pred hHHHHHHHHHHHHHHhhCCCCCcEEEeeccccccc
Confidence 5543332222 2222 34899999999999975
No 85
>KOG0093|consensus
Probab=99.53 E-value=6.3e-14 Score=101.06 Aligned_cols=101 Identities=18% Similarity=0.146 Sum_probs=73.9
Q ss_pred ccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 3 CMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 3 ~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
.||+.++ |.|..-.-+.+.++.+..++.-. .+..++++|||+|+|++...+..++++++++|+++|.+..
T Consensus 32 vGKTSfl~ry~ddSFt~afvsTvGidFKvKTvyr~-----~kRiklQiwDTagqEryrtiTTayyRgamgfiLmyDitNe 106 (193)
T KOG0093|consen 32 VGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVYRS-----DKRIKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNE 106 (193)
T ss_pred ccchhhhHHhhccccccceeeeeeeeEEEeEeeec-----ccEEEEEEEecccchhhhHHHHHHhhccceEEEEEecCCH
Confidence 5777765 45555555555666555544444 5678999999999999999999999999999999999965
Q ss_pred CChhHHHHHH-HHH---HcCCCcEEEEECCcchhh
Q psy2609 78 ICAQTQVALK-QAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~~~~~~-~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
.+....+-|. +++ -.+.|+|+|+||||+...
T Consensus 107 eSf~svqdw~tqIktysw~naqvilvgnKCDmd~e 141 (193)
T KOG0093|consen 107 ESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSE 141 (193)
T ss_pred HHHHHHHHHHHHheeeeccCceEEEEecccCCccc
Confidence 5444433332 222 258999999999999653
No 86
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.53 E-value=9.9e-15 Score=106.02 Aligned_cols=104 Identities=17% Similarity=0.185 Sum_probs=70.8
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.. +..+++..+.....+.+.. .+...++.+|||||+++|...+..+++.+|++++|+|+++
T Consensus 10 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~---~~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~v~v~d~~~ 86 (162)
T cd04106 10 NVGKSSMIQRFVKGIFTKDYKKTIGVDFLEKQIFLRQ---SDEDVRLMLWDTAGQEEFDAITKAYYRGAQACILVFSTTD 86 (162)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcEEEEEEEEEEEEcC---CCCEEEEEEeeCCchHHHHHhHHHHhcCCCEEEEEEECCC
Confidence 6899999866643 2334443333223333331 1346789999999999999999999999999999999986
Q ss_pred CCChhHHHHH-HHHH--HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQVAL-KQAW--LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~--~~~~p~ilv~NK~Dl~~~ 108 (161)
..+......| ..+. ..++|+++|+||+|+...
T Consensus 87 ~~s~~~l~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 121 (162)
T cd04106 87 RESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQ 121 (162)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEEChhcccc
Confidence 4433332222 1122 137999999999999653
No 87
>KOG0087|consensus
Probab=99.52 E-value=5.4e-15 Score=111.96 Aligned_cols=100 Identities=18% Similarity=0.125 Sum_probs=77.9
Q ss_pred ccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 3 CMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 3 ~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
.||+-++ |.|..|.+..|.+.....++... ++.++.+||||+|++||+..+..||++|-++++|+|.+..
T Consensus 25 VGKsnLlsRftrnEF~~~SksTIGvef~t~t~~vd-----~k~vkaqIWDTAGQERyrAitSaYYrgAvGAllVYDITr~ 99 (222)
T KOG0087|consen 25 VGKSNLLSRFTRNEFSLESKSTIGVEFATRTVNVD-----GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITRR 99 (222)
T ss_pred cchhHHHHHhcccccCcccccceeEEEEeeceeec-----CcEEEEeeecccchhhhccccchhhcccceeEEEEechhH
Confidence 4666554 66777778788777777777666 7789999999999999999999999999999999999865
Q ss_pred CChhH-HHHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 78 ICAQT-QVALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
.+.+. ..+++.++. .+++++||+||+||..
T Consensus 100 ~Tfenv~rWL~ELRdhad~nivimLvGNK~DL~~ 133 (222)
T KOG0087|consen 100 QTFENVERWLKELRDHADSNIVIMLVGNKSDLNH 133 (222)
T ss_pred HHHHHHHHHHHHHHhcCCCCeEEEEeecchhhhh
Confidence 44333 223333332 4788999999999965
No 88
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.52 E-value=3.6e-14 Score=118.95 Aligned_cols=101 Identities=22% Similarity=0.177 Sum_probs=85.4
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCc--------hhhHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH--------VDFSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~--------~~~~~~~~~~l~~~d~ 67 (161)
|+|||++++.+... ..+|+|.+.....+.|. +..+.+|||||+ +.+...+..+++.+|+
T Consensus 9 nvGKStL~n~l~~~~~~~v~~~~g~t~d~~~~~~~~~-------~~~~~liDTpG~~~~~~~~~~~~~~~~~~~~~~ad~ 81 (429)
T TIGR03594 9 NVGKSTLFNRLTGKRDAIVSDTPGVTRDRKYGDAEWG-------GREFILIDTGGIEEDDDGLDKQIREQAEIAIEEADV 81 (429)
T ss_pred CCCHHHHHHHHhCCCcceecCCCCcccCceEEEEEEC-------CeEEEEEECCCCCCcchhHHHHHHHHHHHHHhhCCE
Confidence 78999998877543 34688888877777776 668999999997 5567778899999999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+++|+|+..+....+..+.+++...++|+++|+||+|+...+
T Consensus 82 vl~vvD~~~~~~~~d~~i~~~l~~~~~piilVvNK~D~~~~~ 123 (429)
T TIGR03594 82 ILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKED 123 (429)
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHhCCCEEEEEECccCCccc
Confidence 999999999998888888888888899999999999987543
No 89
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.52 E-value=1e-14 Score=105.30 Aligned_cols=98 Identities=16% Similarity=0.098 Sum_probs=71.3
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH------HHHHHHH--hcCEE
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS------EVSTAVR--LCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~------~~~~~l~--~~d~~ 68 (161)
++|||++++.+... ..+|+|++.....+.+. +..+.+|||||++++.. ....++. .+|++
T Consensus 6 ~~GKssl~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 78 (158)
T cd01879 6 NVGKTTLFNALTGARQKVGNWPGVTVEKKEGRFKLG-------GKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLI 78 (158)
T ss_pred CCCHHHHHHHHhcCcccccCCCCcccccceEEEeeC-------CeEEEEEECCCccccCCCChhHHHHHHHhcCCCCcEE
Confidence 68999998666443 34677777766666665 46899999999977653 3455564 89999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++|+|+.... .....+..+...++|+++|+||+|+...
T Consensus 79 i~v~d~~~~~--~~~~~~~~~~~~~~~~iiv~NK~Dl~~~ 116 (158)
T cd01879 79 VNVVDATNLE--RNLYLTLQLLELGLPVVVALNMIDEAEK 116 (158)
T ss_pred EEEeeCCcch--hHHHHHHHHHHcCCCEEEEEehhhhccc
Confidence 9999998532 2233444555678999999999999754
No 90
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.51 E-value=1.5e-14 Score=109.70 Aligned_cols=102 Identities=18% Similarity=0.086 Sum_probs=69.2
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+... ..+.+..+.....+.+. .+..+.+.+|||||+++|...+..+++.+|++|+|+|.++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~d~~~~~v~~~----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~a~~~ilv~D~t~ 85 (201)
T cd04107 10 GVGKTSIIKRYVHGIFSQHYKATIGVDFALKVIEWD----PNTVVRLQLWDIAGQERFGGMTRVYYRGAVGAIIVFDVTR 85 (201)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC----CCCEEEEEEEECCCchhhhhhHHHHhCCCCEEEEEEECCC
Confidence 58999998665432 23333333222223332 1347889999999999999999999999999999999986
Q ss_pred CCChhHHHHH-HHHH-------HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAW-------LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~-------~~~~p~ilv~NK~Dl~~ 107 (161)
..+......| ..+. ..++|+++|+||+|+..
T Consensus 86 ~~s~~~~~~~~~~i~~~~~~~~~~~~piilv~NK~Dl~~ 124 (201)
T cd04107 86 PSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKK 124 (201)
T ss_pred HHHHHHHHHHHHHHHHhhcccCCCCCcEEEEEECCCccc
Confidence 4433332222 1111 24689999999999963
No 91
>KOG0080|consensus
Probab=99.51 E-value=8.3e-15 Score=106.98 Aligned_cols=100 Identities=19% Similarity=0.132 Sum_probs=75.6
Q ss_pred ccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 3 CMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 3 ~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
.||+.++ |.+..+....|.++.....+... ++.+++.||||+|+|+|+.++++||++|.++|+|+|.+..
T Consensus 22 VGKSSLllrFv~~~fd~~~~~tIGvDFkvk~m~vd-----g~~~KlaiWDTAGqErFRtLTpSyyRgaqGiIlVYDVT~R 96 (209)
T KOG0080|consen 22 VGKSSLLLRFVSNTFDDLHPTTIGVDFKVKVMQVD-----GKRLKLAIWDTAGQERFRTLTPSYYRGAQGIILVYDVTSR 96 (209)
T ss_pred ccHHHHHHHHHhcccCccCCceeeeeEEEEEEEEc-----CceEEEEEEeccchHhhhccCHhHhccCceeEEEEEccch
Confidence 3565553 66777777777777777777777 7799999999999999999999999999999999999854
Q ss_pred CChhHHHHHH-----HHHHcCCCcEEEEECCcchh
Q psy2609 78 ICAQTQVALK-----QAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~~~~~-----~~~~~~~p~ilv~NK~Dl~~ 107 (161)
-+.....+|- +....++-.++|+||+|..+
T Consensus 97 dtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes 131 (209)
T KOG0080|consen 97 DTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKES 131 (209)
T ss_pred hhHHhHHHHHHHHHhhcCCccHhHhhhcccccchh
Confidence 4333333331 22234566789999999763
No 92
>TIGR00491 aIF-2 translation initiation factor aIF-2/yIF-2. This model describes archaeal and eukaryotic orthologs of bacterial IF-2. Like IF-2, it helps convey the initiator tRNA to the ribosome, although the initiator is N-formyl-Met in bacteria and Met here. This protein is not closely related to the subunits of eIF-2 of eukaryotes, which is also involved in the initiation of translation. The aIF-2 of Methanococcus jannaschii contains a large intein interrupting a region of very strongly conserved sequence very near the amino end; this model does not correctly align the sequences from Methanococcus jannaschii and Pyrococcus horikoshii in this region.
Probab=99.51 E-value=7.6e-14 Score=121.38 Aligned_cols=106 Identities=26% Similarity=0.276 Sum_probs=80.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCC-----------CCCceeEEEEeCCCchhhHHHHHHHHHhc
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKD-----------TPEEYLINLIDSPGHVDFSSEVSTAVRLC 65 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~-----------~~~~~~i~iiDTpG~~~~~~~~~~~l~~~ 65 (161)
++|||+++|.+.... ..|+|.......+.+..... ..+..++.|||||||++|...+..+++.+
T Consensus 14 d~GKTSLln~l~~~~v~~~e~ggiTq~iG~~~v~~~~~~~~~~~~~~~~~v~~~~~~l~~iDTpG~e~f~~l~~~~~~~a 93 (590)
T TIGR00491 14 DHGKTTLLDKIRGSAVAKREAGGITQHIGATEIPMDVIEGICGDLLKKFKIRLKIPGLLFIDTPGHEAFTNLRKRGGALA 93 (590)
T ss_pred CCCHHHHHHHHhccccccccCCceecccCeeEeeeccccccccccccccccccccCcEEEEECCCcHhHHHHHHHHHhhC
Confidence 789999998875432 23466544444443321100 00112489999999999999999999999
Q ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
|++++|+|+++++..++.+.+..+...++|+++|+||+|+..
T Consensus 94 D~~IlVvD~~~g~~~qt~e~i~~l~~~~vpiIVv~NK~Dl~~ 135 (590)
T TIGR00491 94 DLAILIVDINEGFKPQTQEALNILRMYKTPFVVAANKIDRIP 135 (590)
T ss_pred CEEEEEEECCcCCCHhHHHHHHHHHHcCCCEEEEEECCCccc
Confidence 999999999999999999888888888999999999999963
No 93
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.51 E-value=1.3e-14 Score=106.56 Aligned_cols=100 Identities=17% Similarity=0.025 Sum_probs=68.0
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+..+ ..+.++.+.....+.+. +..+.+.||||||++++...+..+++.+|++++|+|.++
T Consensus 15 ~~GKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (170)
T cd04116 15 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-----GHFVTLQIWDTAGQERFRSLRTPFYRGSDCCLLTFAVDD 89 (170)
T ss_pred CCCHHHHHHHHHcCCCCcCcCCceeeEEEEEEEEEC-----CeEEEEEEEeCCChHHHHHhHHHHhcCCCEEEEEEECCC
Confidence 68999987655432 22222222222233343 557889999999999999999999999999999999986
Q ss_pred CCChhHHHHH-----HHHH---HcCCCcEEEEECCcch
Q psy2609 77 GICAQTQVAL-----KQAW---LEKIQPILVLNKIDRL 106 (161)
Q Consensus 77 ~~~~~~~~~~-----~~~~---~~~~p~ilv~NK~Dl~ 106 (161)
..+......| .... ..++|+++|+||+|+.
T Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 127 (170)
T cd04116 90 SQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIP 127 (170)
T ss_pred HHHHHhHHHHHHHHHHhcccccCCCCcEEEEEECcccc
Confidence 5433222222 1111 1468999999999986
No 94
>KOG0079|consensus
Probab=99.51 E-value=3.8e-14 Score=102.32 Aligned_cols=102 Identities=21% Similarity=0.174 Sum_probs=78.8
Q ss_pred ccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 3 CMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 3 ~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
.||+.++ |.|...+-..+.++....++... |..+++.||||+|+|+|...+..++++..++++|+|.+.+
T Consensus 19 VGKssLl~rF~ddtFs~sYitTiGvDfkirTv~i~-----G~~VkLqIwDtAGqErFrtitstyyrgthgv~vVYDVTn~ 93 (198)
T KOG0079|consen 19 VGKSSLLLRFADDTFSGSYITTIGVDFKIRTVDIN-----GDRVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTNG 93 (198)
T ss_pred ccHHHHHHHHhhcccccceEEEeeeeEEEEEeecC-----CcEEEEEEeecccHHHHHHHHHHHccCCceEEEEEECcch
Confidence 3566554 66677777777777777777777 7799999999999999999999999999999999999977
Q ss_pred CChhHHH-HHHHHHH--cCCCcEEEEECCcchhhh
Q psy2609 78 ICAQTQV-ALKQAWL--EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 78 ~~~~~~~-~~~~~~~--~~~p~ilv~NK~Dl~~~~ 109 (161)
-+..... +++.+.. ..+|.++|+||.|.+...
T Consensus 94 ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~Rr 128 (198)
T KOG0079|consen 94 ESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERR 128 (198)
T ss_pred hhhHhHHHHHHHHHhcCccccceecccCCCCccce
Confidence 6544432 2233322 367889999999997643
No 95
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=99.50 E-value=1.2e-13 Score=105.53 Aligned_cols=106 Identities=16% Similarity=0.155 Sum_probs=71.4
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||.++..+ .++..+.+..+.....+.+...+..++.+.+.||||+|+++|......+++.+|++|+|+|.++
T Consensus 10 gVGKTSLi~~~~~~~f~~~~~~Tig~~~~~k~~~~~~~~~~~~~~~l~IwDtaG~e~~~~l~~~~yr~ad~iIlVyDvtn 89 (202)
T cd04102 10 GVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVKSTRAVFYNQVNGIILVHDLTN 89 (202)
T ss_pred CCCHHHHHHHHHcCCCCCCCCcceeeeEEEEEEEEcCCCCCCcEEEEEEEecCCchhHHHHHHHHhCcCCEEEEEEECcC
Confidence 47888887543 3333344433332233444322223457899999999999999999999999999999999987
Q ss_pred CCChhHHHHH-HHHHH----------------------cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAWL----------------------EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~~----------------------~~~p~ilv~NK~Dl~~ 107 (161)
.-+......| ..+.. .++|+|||+||+|+..
T Consensus 90 ~~Sf~~l~~W~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~PiilVGnK~Dl~~ 143 (202)
T cd04102 90 RKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIP 143 (202)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccccccccccccCCCCceEEEEEECccchh
Confidence 6544333222 22211 3689999999999964
No 96
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.50 E-value=3.7e-14 Score=103.62 Aligned_cols=100 Identities=16% Similarity=0.125 Sum_probs=69.4
Q ss_pred ccccccccCCchhHH---------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEE
Q psy2609 2 LCMVSSYMDSRKDEQ---------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVV 72 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~---------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVv 72 (161)
++|||++++.+.... +...|+......+.+. ..++.+|||||++++...+..+++.+|++++|+
T Consensus 9 ~~GKstLi~~l~~~~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~v~vv 81 (167)
T cd04160 9 NAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVG-------NARLKFWDLGGQESLRSLWDKYYAECHAIIYVI 81 (167)
T ss_pred CCCHHHHHHHHhhhcccccCCcccccCCccccceEEEEEC-------CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEE
Confidence 689999987764322 1233344344444444 689999999999999999999999999999999
Q ss_pred eCCCCCChhH-HHHHHHHH----HcCCCcEEEEECCcchhh
Q psy2609 73 DCVEGICAQT-QVALKQAW----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 73 d~~~~~~~~~-~~~~~~~~----~~~~p~ilv~NK~Dl~~~ 108 (161)
|+++.-.... ...+..+. ..++|+++++||+|+...
T Consensus 82 d~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D~~~~ 122 (167)
T cd04160 82 DSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDA 122 (167)
T ss_pred ECchHHHHHHHHHHHHHHHhChhhcCCCEEEEEEccccccC
Confidence 9975322111 11222221 247999999999998653
No 97
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.50 E-value=3e-14 Score=119.76 Aligned_cols=99 Identities=24% Similarity=0.209 Sum_probs=79.1
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh----------hH-HHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD----------FS-SEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~----------~~-~~~~~~l~~ 64 (161)
|+|||++++.+..+ ..+|.|++.....+.+. +..+.+|||||+.+ |. ..+..+++.
T Consensus 183 n~GKStlin~ll~~~~~~~~~~~gtt~~~~~~~~~~~-------~~~~~lvDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 255 (435)
T PRK00093 183 NVGKSSLINALLGEERVIVSDIAGTTRDSIDTPFERD-------GQKYTLIDTAGIRRKGKVTEGVEKYSVIRTLKAIER 255 (435)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceEEEEEEEEEEC-------CeeEEEEECCCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 79999999776533 35688877665555555 56889999999643 21 234568899
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+|++|+|+|++.+...++..++..+...++|+++|+||+|+..
T Consensus 256 ad~~ilViD~~~~~~~~~~~i~~~~~~~~~~~ivv~NK~Dl~~ 298 (435)
T PRK00093 256 ADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVD 298 (435)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCcEEEEEECccCCC
Confidence 9999999999999999999888888888999999999999974
No 98
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.50 E-value=2.2e-14 Score=104.29 Aligned_cols=101 Identities=17% Similarity=0.108 Sum_probs=67.4
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+. .+..+.+. ......+.+. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 12 ~~GKtsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 85 (164)
T cd04145 12 GVGKSALTIQFIQSYFVTDYDPTIE-DSYTKQCEID-----GQWAILDILDTAGQEEFSAMREQYMRTGEGFLLVFSVTD 85 (164)
T ss_pred CCcHHHHHHHHHhCCCCcccCCCcc-ceEEEEEEEC-----CEEEEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 689999876543 22222222 1111222333 446789999999999999999999999999999999986
Q ss_pred CCChhHHH-----HHHHHHHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-----ALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-----~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
..+..... +.+.....++|+++|+||+|+...
T Consensus 86 ~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~Dl~~~ 122 (164)
T cd04145 86 RGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQ 122 (164)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCEEEEeeCcccccc
Confidence 44322221 111112247899999999999653
No 99
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.50 E-value=6.8e-14 Score=105.84 Aligned_cols=101 Identities=15% Similarity=0.135 Sum_probs=72.3
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++..+. ++..+.++.+.....+.+. +..+.+.+|||||+++|...+..+++.+|++|+|+|.++
T Consensus 16 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~i~~~-----~~~~~l~iwDt~G~~~~~~l~~~~~~~ad~illVfD~t~ 90 (189)
T cd04121 16 DVGKGEILASLQDGSTESPYGYNMGIDYKTTTILLD-----GRRVKLQLWDTSGQGRFCTIFRSYSRGAQGIILVYDITN 90 (189)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcceeEEEEEEEEEC-----CEEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 578999875443 3444445554433444444 457899999999999999999999999999999999986
Q ss_pred CCChhHHHH-HHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVA-LKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~-~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+...... +..+.. .++|+|||+||+|+..
T Consensus 91 ~~Sf~~~~~w~~~i~~~~~~~piilVGNK~DL~~ 124 (189)
T cd04121 91 RWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAF 124 (189)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEECccchh
Confidence 554333322 222222 4789999999999964
No 100
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=99.50 E-value=1.6e-14 Score=121.16 Aligned_cols=98 Identities=22% Similarity=0.172 Sum_probs=78.7
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH-----------HHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS-----------SEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~-----------~~~~~~l~~ 64 (161)
++|||++++.+-.+ ..+|.|++.....+.+. +..+.+|||||+.++. ..+..+++.
T Consensus 182 ~~GKSsLin~l~~~~~~~~~~~~gtt~~~~~~~~~~~-------~~~~~liDT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 254 (429)
T TIGR03594 182 NVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERN-------GKKYLLIDTAGIRRKGKVTEGVEKYSVLRTLKAIER 254 (429)
T ss_pred CCCHHHHHHHHHCCCeeecCCCCCceECcEeEEEEEC-------CcEEEEEECCCccccccchhhHHHHHHHHHHHHHHh
Confidence 78999998776433 35678877666666655 4589999999975432 124567899
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
+|++|+|+|++++.+.++..++..+...++|+++|+||+|+.
T Consensus 255 ad~~ilV~D~~~~~~~~~~~~~~~~~~~~~~iiiv~NK~Dl~ 296 (429)
T TIGR03594 255 ADVVLLVLDATEGITEQDLRIAGLILEAGKALVIVVNKWDLV 296 (429)
T ss_pred CCEEEEEEECCCCccHHHHHHHHHHHHcCCcEEEEEECcccC
Confidence 999999999999999999888888888899999999999997
No 101
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.50 E-value=6.2e-14 Score=102.58 Aligned_cols=100 Identities=17% Similarity=0.152 Sum_probs=67.9
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..+.............. +..+.+.+|||||+++|...+..+++.+|++++|+|+++
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (161)
T cd04124 10 AVGKSKLVERFLMDGYEPQQLSTYALTLYKHNAKFE-----GKTILVDFWDTAGQERFQTMHASYYHKAHACILVFDVTR 84 (161)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCceeeEEEEEEEEEC-----CEEEEEEEEeCCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence 58999998665322 21111111111112222 457889999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH--cCCCcEEEEECCcch
Q psy2609 77 GICAQTQV-ALKQAWL--EKIQPILVLNKIDRL 106 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~--~~~p~ilv~NK~Dl~ 106 (161)
..+..... ++..+.. .++|+++|+||+|+.
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~p~ivv~nK~Dl~ 117 (161)
T cd04124 85 KITYKNLSKWYEELREYRPEIPCIVVANKIDLD 117 (161)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEECccCc
Confidence 55433322 2233333 378999999999985
No 102
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.50 E-value=4e-14 Score=103.15 Aligned_cols=100 Identities=20% Similarity=0.152 Sum_probs=66.9
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++ +.+.++..+.+. +.....+... +....+.||||||+++|...+..+++.+|++++|+|.++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~d~~~ 84 (163)
T cd04176 11 GVGKSALTVQFVSGTFIEKYDPTIE-DFYRKEIEVD-----SSPSVLEILDTAGTEQFASMRDLYIKNGQGFIVVYSLVN 84 (163)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCchh-heEEEEEEEC-----CEEEEEEEEECCCcccccchHHHHHhhCCEEEEEEECCC
Confidence 68999987 444333332221 1111223333 446789999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .++..+. ..++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~piviv~nK~Dl~~ 120 (163)
T cd04176 85 QQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLES 120 (163)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 4332222 2222222 14799999999999864
No 103
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.49 E-value=7.4e-14 Score=102.79 Aligned_cols=98 Identities=16% Similarity=0.148 Sum_probs=67.9
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+..+ ..+.+. .....+. .+.+++.+|||||+++|...+..+++.+|++++|+|+++
T Consensus 9 ~vGKTsli~~~~~~~~~~~~~pt~g--~~~~~i~-------~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~t~ 79 (164)
T cd04162 9 GAGKTSLLHSLSSERSLESVVPTTG--FNSVAIP-------TQDAIMELLEIGGSQNLRKYWKRYLSGSQGLIFVVDSAD 79 (164)
T ss_pred CCCHHHHHHHHhcCCCcccccccCC--cceEEEe-------eCCeEEEEEECCCCcchhHHHHHHHhhCCEEEEEEECCC
Confidence 68999987655433 223332 2222232 337899999999999999999999999999999999986
Q ss_pred CCChhH-HHHHHHHH--HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAW--LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~--~~~~p~ilv~NK~Dl~~~ 108 (161)
..+... ...+..+. ..++|+++|+||+|+...
T Consensus 80 ~~s~~~~~~~l~~~~~~~~~~piilv~NK~Dl~~~ 114 (164)
T cd04162 80 SERLPLARQELHQLLQHPPDLPLVVLANKQDLPAA 114 (164)
T ss_pred HHHHHHHHHHHHHHHhCCCCCcEEEEEeCcCCcCC
Confidence 432222 11222222 257999999999998643
No 104
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.49 E-value=4.1e-14 Score=103.48 Aligned_cols=102 Identities=20% Similarity=0.112 Sum_probs=69.9
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.. +..++++.+.....+.+. +..+++.+|||||++++......+++.+|++++|+|+++
T Consensus 12 ~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 86 (166)
T cd01869 12 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIIVYDVTD 86 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEECCCcHhHHHHHHHHhCcCCEEEEEEECcC
Confidence 6899999866532 223344433333334443 446789999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+.. .++|+++|+||+|+...
T Consensus 87 ~~s~~~l~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 122 (166)
T cd01869 87 QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDK 122 (166)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCcEEEEEEChhcccc
Confidence 4322221 12222222 46899999999998653
No 105
>COG2229 Predicted GTPase [General function prediction only]
Probab=99.49 E-value=8.8e-14 Score=103.41 Aligned_cols=84 Identities=20% Similarity=0.191 Sum_probs=69.6
Q ss_pred CccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC-CCcEE
Q psy2609 20 ITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEK-IQPIL 98 (161)
Q Consensus 20 iti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~-~p~il 98 (161)
.|+.....+..+. +++.+.++|||||+||.-++..+.+++.++|+++|++.+.....+.++......+ +|+++
T Consensus 53 tTva~D~g~~~~~------~~~~v~LfgtPGq~RF~fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vV 126 (187)
T COG2229 53 TTVAMDFGSIELD------EDTGVHLFGTPGQERFKFMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVV 126 (187)
T ss_pred eeEeecccceEEc------CcceEEEecCCCcHHHHHHHHHHhCCcceEEEEEecCCCcchHHHHHHHHHhhccCCCEEE
Confidence 5555555555544 2478999999999999999999999999999999999888776677777777776 99999
Q ss_pred EEECCcchhhh
Q psy2609 99 VLNKIDRLILE 109 (161)
Q Consensus 99 v~NK~Dl~~~~ 109 (161)
++||.|+....
T Consensus 127 a~NK~DL~~a~ 137 (187)
T COG2229 127 AINKQDLFDAL 137 (187)
T ss_pred EeeccccCCCC
Confidence 99999998764
No 106
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.49 E-value=4e-14 Score=102.71 Aligned_cols=101 Identities=17% Similarity=0.145 Sum_probs=71.9
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++.+.+.....+.+. +...++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~D~~G~~~~~~~~~~~~~~~~~ii~v~d~~~ 84 (161)
T cd01861 10 SVGKTSIITRFMYDTFDNQYQATIGIDFLSKTMYLE-----DKTVRLQLWDTAGQERFRSLIPSYIRDSSVAVVVYDITN 84 (161)
T ss_pred CCCHHHHHHHHHcCCCCccCCCceeeeEEEEEEEEC-----CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcC
Confidence 689999975543 3344555555444445444 446789999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHH-HHc--CCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQA-WLE--KIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~-~~~--~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++... ... ++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~D~~~ 119 (161)
T cd01861 85 RQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSD 119 (161)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEEEChhccc
Confidence 54333322 22222 222 489999999999953
No 107
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.49 E-value=7.7e-14 Score=102.27 Aligned_cols=102 Identities=14% Similarity=0.094 Sum_probs=68.8
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.. +..+.+..+.....+... +..+++.+|||||+++|...+..+++.+|++|+|+|+++
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 86 (166)
T cd04122 12 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVN-----GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 86 (166)
T ss_pred CCCHHHHHHHHhcCCCCCCCCcccceeEEEEEEEEC-----CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 6899999865532 222222222222223333 457889999999999999999999999999999999986
Q ss_pred CCChhHHHHH-HHHH---HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQVAL-KQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
..+......| .... ..+.|+++|+||+|+...
T Consensus 87 ~~s~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~ 122 (166)
T cd04122 87 RSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQ 122 (166)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECcccccc
Confidence 4433332222 2221 246789999999999653
No 108
>KOG0460|consensus
Probab=99.49 E-value=1.9e-13 Score=110.35 Aligned_cols=94 Identities=29% Similarity=0.433 Sum_probs=84.0
Q ss_pred cCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH
Q psy2609 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQ 88 (161)
Q Consensus 9 ~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~ 88 (161)
+|+-|+|+.|||||.+ .+++|. .....+--+|||||.+|.+.+..+...-|++|+|+.+++|+.+|+++++-+
T Consensus 92 ID~APEEkaRGITIn~--aHveYe-----Ta~RhYaH~DCPGHADYIKNMItGaaqMDGaILVVaatDG~MPQTrEHlLL 164 (449)
T KOG0460|consen 92 IDKAPEEKARGITINA--AHVEYE-----TAKRHYAHTDCPGHADYIKNMITGAAQMDGAILVVAATDGPMPQTREHLLL 164 (449)
T ss_pred hhcChhhhhccceEee--eeeeee-----ccccccccCCCCchHHHHHHhhcCccccCceEEEEEcCCCCCcchHHHHHH
Confidence 5889999999999875 567777 447889999999999999999999999999999999999999999999988
Q ss_pred HHHcCCCcE-EEEECCcchhhh
Q psy2609 89 AWLEKIQPI-LVLNKIDRLILE 109 (161)
Q Consensus 89 ~~~~~~p~i-lv~NK~Dl~~~~ 109 (161)
.+..+++.| +++||.|++...
T Consensus 165 ArQVGV~~ivvfiNKvD~V~d~ 186 (449)
T KOG0460|consen 165 ARQVGVKHIVVFINKVDLVDDP 186 (449)
T ss_pred HHHcCCceEEEEEecccccCCH
Confidence 888899975 679999998443
No 109
>PRK00093 GTP-binding protein Der; Reviewed
Probab=99.49 E-value=1.1e-13 Score=116.45 Aligned_cols=99 Identities=20% Similarity=0.153 Sum_probs=81.3
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~ 67 (161)
|+|||++++.+... ..+|+|.+.....+.+. +..+.+|||||+++ +...+..+++.+|+
T Consensus 11 ~vGKStL~n~l~~~~~~~v~~~~~~t~d~~~~~~~~~-------~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~ 83 (435)
T PRK00093 11 NVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWL-------GREFILIDTGGIEPDDDGFEKQIREQAELAIEEADV 83 (435)
T ss_pred CCCHHHHHHHHhCCCceeeCCCCCCcccceEEEEEEC-------CcEEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCE
Confidence 78999998777533 24678877776677776 57899999999987 45557788999999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+++|+|+..+....+..+..++...++|+++|+||+|+..
T Consensus 84 il~vvd~~~~~~~~~~~~~~~l~~~~~piilv~NK~D~~~ 123 (435)
T PRK00093 84 ILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGPD 123 (435)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHcCCcEEEEEECccCcc
Confidence 9999999988888777777888888999999999999754
No 110
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.49 E-value=3.3e-14 Score=103.41 Aligned_cols=101 Identities=19% Similarity=0.132 Sum_probs=70.6
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+. .+..+.++.......+... +..+.+.+|||||++++......+++.+|++++|+|+++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04113 10 GTGKSCLLHRFVENKFKEDSQHTIGVEFGSKIIRVG-----GKRVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITN 84 (161)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeeEEEEEEEEC-----CEEEEEEEEECcchHHHHHhHHHHhcCCCEEEEEEECCC
Confidence 689999987663 2333333333322333333 446789999999999999999999999999999999987
Q ss_pred CCChhHHHHH-HHH---HHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQA---WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~---~~~~~p~ilv~NK~Dl~~ 107 (161)
..+......| ... ...++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 119 (161)
T cd04113 85 RTSFEALPTWLSDARALASPNIVVILVGNKSDLAD 119 (161)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhcch
Confidence 5443332222 222 235789999999999965
No 111
>PRK00089 era GTPase Era; Reviewed
Probab=99.48 E-value=3.3e-14 Score=113.76 Aligned_cols=98 Identities=23% Similarity=0.237 Sum_probs=71.0
Q ss_pred ccccccccCCchhHHHc------CCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQER------GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~------giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~ 67 (161)
|||||++++.+..+.-. +.|... ..-.+. .++.++.||||||+.+ +...+..++..+|+
T Consensus 15 n~GKSTLin~L~g~~~~~vs~~~~tt~~~--i~~i~~-----~~~~qi~~iDTPG~~~~~~~l~~~~~~~~~~~~~~~D~ 87 (292)
T PRK00089 15 NVGKSTLLNALVGQKISIVSPKPQTTRHR--IRGIVT-----EDDAQIIFVDTPGIHKPKRALNRAMNKAAWSSLKDVDL 87 (292)
T ss_pred CCCHHHHHHHHhCCceeecCCCCCccccc--EEEEEE-----cCCceEEEEECCCCCCchhHHHHHHHHHHHHHHhcCCE
Confidence 79999999887655422 222221 111122 2357999999999744 34456678889999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
+++|+|++.+.......++..+...++|+++|+||+|+.
T Consensus 88 il~vvd~~~~~~~~~~~i~~~l~~~~~pvilVlNKiDl~ 126 (292)
T PRK00089 88 VLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLV 126 (292)
T ss_pred EEEEEeCCCCCChhHHHHHHHHhhcCCCEEEEEECCcCC
Confidence 999999998776666777777766689999999999997
No 112
>PRK03003 GTP-binding protein Der; Reviewed
Probab=99.48 E-value=1.1e-13 Score=117.82 Aligned_cols=99 Identities=19% Similarity=0.190 Sum_probs=77.9
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCch----------hhHHH-HHHHHHh
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV----------DFSSE-VSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~----------~~~~~-~~~~l~~ 64 (161)
|+|||++++.+..+ ..+|+|++.....+.+. +..+.||||||+. .|... +..+++.
T Consensus 221 nvGKSSLin~l~~~~~~~~s~~~gtT~d~~~~~~~~~-------~~~~~l~DTaG~~~~~~~~~~~e~~~~~~~~~~i~~ 293 (472)
T PRK03003 221 NVGKSSLLNKLAGEERSVVDDVAGTTVDPVDSLIELG-------GKTWRFVDTAGLRRRVKQASGHEYYASLRTHAAIEA 293 (472)
T ss_pred CCCHHHHHHHHhCCCcccccCCCCccCCcceEEEEEC-------CEEEEEEECCCccccccccchHHHHHHHHHHHHHhc
Confidence 79999998766543 34688887766666665 5678899999963 23322 3456889
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+|++++|+|++++.+.++..++..+...++|+|+|+||+|+..
T Consensus 294 ad~vilV~Da~~~~s~~~~~~~~~~~~~~~piIiV~NK~Dl~~ 336 (472)
T PRK03003 294 AEVAVVLIDASEPISEQDQRVLSMVIEAGRALVLAFNKWDLVD 336 (472)
T ss_pred CCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCC
Confidence 9999999999999988888888877778999999999999964
No 113
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.48 E-value=9.1e-14 Score=103.13 Aligned_cols=100 Identities=21% Similarity=0.177 Sum_probs=69.4
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+ +++..+.+.... ...+.+. +..+.+.+|||||+++|...+..+++.+|++++|+|+++
T Consensus 12 ~vGKTsL~~~~~~~~f~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~~ilv~d~~~ 85 (172)
T cd04141 12 GVGKSAVTMQFISHSFPDYHDPTIEDAY-KQQARID-----NEPALLDILDTAGQAEFTAMRDQYMRCGEGFIICYSVTD 85 (172)
T ss_pred CCcHHHHHHHHHhCCCCCCcCCcccceE-EEEEEEC-----CEEEEEEEEeCCCchhhHHHhHHHhhcCCEEEEEEECCc
Confidence 58999987444 333333332111 1223333 456889999999999999999999999999999999987
Q ss_pred CCChhHHHHH-HHHH----HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
..+......| ..+. ..++|+++|+||+|+..
T Consensus 86 ~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~Dl~~ 121 (172)
T cd04141 86 RHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLES 121 (172)
T ss_pred hhHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhhhh
Confidence 6554443321 2221 24789999999999864
No 114
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=3.2e-13 Score=112.01 Aligned_cols=94 Identities=33% Similarity=0.385 Sum_probs=85.4
Q ss_pred cCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH
Q psy2609 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQ 88 (161)
Q Consensus 9 ~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~ 88 (161)
.|.+++|.++|+|++..+..+... ++.+.|+|.|||++|...+..++...|++++|+++++|+..|+.+++..
T Consensus 25 ~d~l~EekKRG~TiDlg~~y~~~~-------d~~~~fIDvpgh~~~i~~miag~~~~d~alLvV~~deGl~~qtgEhL~i 97 (447)
T COG3276 25 TDRLPEEKKRGITIDLGFYYRKLE-------DGVMGFIDVPGHPDFISNLLAGLGGIDYALLVVAADEGLMAQTGEHLLI 97 (447)
T ss_pred cccchhhhhcCceEeeeeEeccCC-------CCceEEeeCCCcHHHHHHHHhhhcCCceEEEEEeCccCcchhhHHHHHH
Confidence 599999999999999776665554 5699999999999999999999999999999999999999999999999
Q ss_pred HHHcCCCc-EEEEECCcchhhh
Q psy2609 89 AWLEKIQP-ILVLNKIDRLILE 109 (161)
Q Consensus 89 ~~~~~~p~-ilv~NK~Dl~~~~ 109 (161)
+...+++. ++|++|+|+....
T Consensus 98 Ldllgi~~giivltk~D~~d~~ 119 (447)
T COG3276 98 LDLLGIKNGIIVLTKADRVDEA 119 (447)
T ss_pred HHhcCCCceEEEEeccccccHH
Confidence 99999998 8999999998643
No 115
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.48 E-value=1.9e-14 Score=106.01 Aligned_cols=101 Identities=12% Similarity=0.081 Sum_probs=68.3
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.. +..+.+..+.....+... +..+.+.+|||||++++......+++.+|++|+|+|+++
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (166)
T cd00877 10 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLDFHTN-----RGKIRFNVWDTAGQEKFGGLRDGYYIGGQCAIIMFDVTS 84 (166)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-----CEEEEEEEEECCCChhhccccHHHhcCCCEEEEEEECCC
Confidence 5899999866532 222222222222222222 456899999999999998888889999999999999986
Q ss_pred CCChhHHHHH-HHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+.+....| ..+.. .++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~piiiv~nK~Dl~~ 118 (166)
T cd00877 85 RVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKD 118 (166)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEchhccc
Confidence 5443332222 22222 2799999999999963
No 116
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.48 E-value=1.3e-13 Score=101.25 Aligned_cols=101 Identities=16% Similarity=0.088 Sum_probs=70.7
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..+.++.+.....+.+. +..+.+.+|||||++++......+++.+|++++|+|+++
T Consensus 13 ~~GKSsl~~~~~~~~f~~~~~~t~~~~~~~~~~~~~-----~~~~~l~l~D~~g~~~~~~~~~~~~~~ad~~i~v~d~~~ 87 (167)
T cd01867 13 GVGKSCLLLRFSEDSFNPSFISTIGIDFKIRTIELD-----GKKIKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 87 (167)
T ss_pred CCCHHHHHHHHhhCcCCcccccCccceEEEEEEEEC-----CEEEEEEEEeCCchHHHHHHHHHHhCCCCEEEEEEECcC
Confidence 689998875553 3334444444333344444 446889999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHH---HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++..+. ..++|+++|+||+|+..
T Consensus 88 ~~s~~~~~~~~~~i~~~~~~~~p~iiv~nK~Dl~~ 122 (167)
T cd01867 88 EKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEE 122 (167)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 44332222 222222 24689999999999975
No 117
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.48 E-value=6e-14 Score=105.59 Aligned_cols=101 Identities=13% Similarity=0.046 Sum_probs=68.4
Q ss_pred ccccccccCCch------hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRK------DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~------~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||+++..+. .+..+++..+.....+.+. +..+++.||||||++++......+++.+|++|+|+|++
T Consensus 10 ~vGKTSli~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~i~v~D~~ 84 (191)
T cd04112 10 GVGKTCLLVRFKDGAFLNGNFIATVGIDFRNKVVTVD-----GVKVKLQIWDTAGQERFRSVTHAYYRDAHALLLLYDIT 84 (191)
T ss_pred CCCHHHHHHHHhcCCCCccCcCCcccceeEEEEEEEC-----CEEEEEEEEeCCCcHHHHHhhHHHccCCCEEEEEEECC
Confidence 689999984432 2233333333222233333 45789999999999999999999999999999999998
Q ss_pred CCCChhHH-HHHHHHH---HcCCCcEEEEECCcchh
Q psy2609 76 EGICAQTQ-VALKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 76 ~~~~~~~~-~~~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
...+.... .++..+. ..++|+++|+||+|+..
T Consensus 85 ~~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 120 (191)
T cd04112 85 NKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSG 120 (191)
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCcEEEEEEcccchh
Confidence 64332221 1222222 23689999999999964
No 118
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.48 E-value=2.6e-14 Score=104.35 Aligned_cols=101 Identities=18% Similarity=0.101 Sum_probs=70.4
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++.++. .+..+.++.+.....+... +..+.+.+|||||++++......+++.++++++|+|+++
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 87 (165)
T cd01868 13 GVGKSNLLSRFTRNEFNLDSKSTIGVEFATRSIQID-----GKTIKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK 87 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-----CEEEEEEEEeCCChHHHHHHHHHHHCCCCEEEEEEECcC
Confidence 689999986653 2334444444333444444 445789999999999999999999999999999999985
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++..+.. .++|+++|+||+|+..
T Consensus 88 ~~s~~~~~~~~~~~~~~~~~~~pi~vv~nK~Dl~~ 122 (165)
T cd01868 88 KQTFENVERWLKELRDHADSNIVIMLVGNKSDLRH 122 (165)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 33322222 2222222 2589999999999864
No 119
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.48 E-value=5.4e-14 Score=125.00 Aligned_cols=99 Identities=22% Similarity=0.256 Sum_probs=82.1
Q ss_pred ccccccccCCchh------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKD------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~ 67 (161)
|+|||++++.+.. +..+|+|.+.......|. +..+.+|||||++. +...+..+++.+|+
T Consensus 285 nvGKSSL~n~l~~~~~~iv~~~pGvT~d~~~~~~~~~-------~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~aD~ 357 (712)
T PRK09518 285 NVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWA-------GTDFKLVDTGGWEADVEGIDSAIASQAQIAVSLADA 357 (712)
T ss_pred CCCHHHHHHHHhCCCceeecCCCCeeEEEEEEEEEEC-------CEEEEEEeCCCcCCCCccHHHHHHHHHHHHHHhCCE
Confidence 7999999987753 335788887666555565 67899999999763 56678889999999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+|+|+|++.++...+..+...+...++|+++|+||+|+..
T Consensus 358 iL~VvDa~~~~~~~d~~i~~~Lr~~~~pvIlV~NK~D~~~ 397 (712)
T PRK09518 358 VVFVVDGQVGLTSTDERIVRMLRRAGKPVVLAVNKIDDQA 397 (712)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcCCCEEEEEECccccc
Confidence 9999999998888888888888888999999999999864
No 120
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.48 E-value=1.7e-13 Score=101.43 Aligned_cols=102 Identities=19% Similarity=0.111 Sum_probs=69.3
Q ss_pred ccccccccCC-----chhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDS-----RKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~-----~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++.. +.++..+.+..+.....+... +..+++.||||||+++|......+++.+|++++|+|+++
T Consensus 10 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~ 84 (170)
T cd04108 10 SVGKTCLINRFCKDVFDKNYKATIGVDFEMERFEIL-----GVPFSLQLWDTAGQERFKCIASTYYRGAQAIIIVFDLTD 84 (170)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-----CEEEEEEEEeCCChHHHHhhHHHHhcCCCEEEEEEECcC
Confidence 5899988743 444444555444332334343 446899999999999999999999999999999999985
Q ss_pred CCChhHH-HHHHHHHHc----CCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQAWLE----KIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~~----~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+... ..|+++|+||+|+...
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~~iilVgnK~Dl~~~ 121 (170)
T cd04108 85 VASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSP 121 (170)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEChhcCcc
Confidence 3322222 222222222 3568899999998643
No 121
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.47 E-value=1.1e-13 Score=102.57 Aligned_cols=106 Identities=15% Similarity=0.106 Sum_probs=70.9
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCC-----CCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEE
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKD-----TPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIV 71 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~-----~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilV 71 (161)
++|||+++..+. .+..++++.+.....+.+....+ .+..+.+.||||||+++|...+..+++.+|++++|
T Consensus 14 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v 93 (180)
T cd04127 14 GVGKTSFLYQYTDNKFNPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLI 93 (180)
T ss_pred CCCHHHHHHHHhcCCCCccCCCccceEEEEEEEEEcCccccccccCCCEEEEEEEeCCChHHHHHHHHHHhCCCCEEEEE
Confidence 689999985543 33344444333333344432111 13468899999999999999999999999999999
Q ss_pred EeCCCCCChhHHHH-HHHHHH----cCCCcEEEEECCcchh
Q psy2609 72 VDCVEGICAQTQVA-LKQAWL----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 72 vd~~~~~~~~~~~~-~~~~~~----~~~p~ilv~NK~Dl~~ 107 (161)
+|+++..+...... +..+.. .+.|+++|+||+|+..
T Consensus 94 ~d~~~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 134 (180)
T cd04127 94 FDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLED 134 (180)
T ss_pred EECCCHHHHHHHHHHHHHHHHhcCCCCCcEEEEEeCccchh
Confidence 99986433333222 222222 3678999999999965
No 122
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.47 E-value=1.9e-13 Score=99.17 Aligned_cols=100 Identities=14% Similarity=0.075 Sum_probs=67.3
Q ss_pred ccccccccCCchhHH----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+.... ...-|+......+.+ ..+++.+|||||++++...+..+++.+|++++|+|+++.
T Consensus 9 ~~GKTsl~~~l~~~~~~~~~~~~t~g~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 81 (162)
T cd04157 9 NSGKTTIINQLKPENAQSQIIVPTVGFNVESFEK-------GNLSFTAFDMSGQGKYRGLWEHYYKNIQGIIFVIDSSDR 81 (162)
T ss_pred CCCHHHHHHHHcccCCCcceecCccccceEEEEE-------CCEEEEEEECCCCHhhHHHHHHHHccCCEEEEEEeCCcH
Confidence 689999986665431 111222222222222 378999999999999999999999999999999999865
Q ss_pred CChhH-HHHHHHH------HHcCCCcEEEEECCcchhh
Q psy2609 78 ICAQT-QVALKQA------WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~-~~~~~~~------~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+... ...+..+ ...++|+++|+||+|+...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~~ 119 (162)
T cd04157 82 LRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDA 119 (162)
T ss_pred HHHHHHHHHHHHHHcCcccccCCCCEEEEEeCccccCC
Confidence 43211 1111111 1247999999999998653
No 123
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=99.46 E-value=2.5e-13 Score=108.99 Aligned_cols=136 Identities=24% Similarity=0.297 Sum_probs=106.5
Q ss_pred cCCchhHHHcCCccccceEEEEeecCCC-------------------CCCceeEEEEeCCCchhhHHHHHHHHHhcCEEE
Q psy2609 9 MDSRKDEQERGITMKSSSISLYYKDNKD-------------------TPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTI 69 (161)
Q Consensus 9 ~D~~~~E~~~giti~~~~~~~~~~~~~~-------------------~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~i 69 (161)
+|++.+|-+||+|++..+....+..... ..-...+.|+|+|||+-+...+.++....|+++
T Consensus 35 T~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VSfVDaPGHe~LMATMLsGAAlMDgAl 114 (415)
T COG5257 35 TDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVSFVDAPGHETLMATMLSGAALMDGAL 114 (415)
T ss_pred eechhHHHhcCcEEEeccccCceEeCCCCCCCcccccCCCCCCCCCCccEEEEEEEeeCCchHHHHHHHhcchhhhcceE
Confidence 5899999999999987766443221110 111257999999999999999999999999999
Q ss_pred EEEeCCCC-CChhHHHHHHHHHHcCCCc-EEEEECCcchhhhhcCChHHHHHhHHHHHH--------HHHhhhhhhchhh
Q psy2609 70 IVVDCVEG-ICAQTQVALKQAWLEKIQP-ILVLNKIDRLILEMKLSPLDIYVHLSQLLE--------QVNAVMGELFASQ 139 (161)
Q Consensus 70 lVvd~~~~-~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~--------~~~~~~~~~~~~~ 139 (161)
+|+++++. +++|+.+++-.+.-.++.. |++-||+|+++.+ ...+-|++++.|.+ .+|+++.-..|.|
T Consensus 115 LvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E---~AlE~y~qIk~FvkGt~Ae~aPIIPiSA~~~~NID 191 (415)
T COG5257 115 LVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRE---RALENYEQIKEFVKGTVAENAPIIPISAQHKANID 191 (415)
T ss_pred EEEecCCCCCCCchHHHHHHHhhhccceEEEEecccceecHH---HHHHHHHHHHHHhcccccCCCceeeehhhhccCHH
Confidence 99999865 4789999887777666664 6889999999877 46777888888763 4788888889988
Q ss_pred hhhhhhcc
Q psy2609 140 VMDETAVK 147 (161)
Q Consensus 140 ~~~~~~~~ 147 (161)
.+.+.-++
T Consensus 192 al~e~i~~ 199 (415)
T COG5257 192 ALIEAIEK 199 (415)
T ss_pred HHHHHHHH
Confidence 88876554
No 124
>KOG0098|consensus
Probab=99.46 E-value=9.4e-14 Score=103.59 Aligned_cols=86 Identities=17% Similarity=0.164 Sum_probs=62.7
Q ss_pred CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH----HHHHHcCC
Q psy2609 19 GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL----KQAWLEKI 94 (161)
Q Consensus 19 giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~----~~~~~~~~ 94 (161)
.+.++.....+..+ ++..++++|||+||+.|.+.+.+||+.+.++|||+|.+..-+......| ++....++
T Consensus 38 TiGvefg~r~~~id-----~k~IKlqiwDtaGqe~frsv~~syYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~Nm 112 (216)
T KOG0098|consen 38 TIGVEFGARMVTID-----GKQIKLQIWDTAGQESFRSVTRSYYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENM 112 (216)
T ss_pred eeeeeeceeEEEEc-----CceEEEEEEecCCcHHHHHHHHHHhccCcceEEEEEccchhhHHHHHHHHHHHHHhcCCCc
Confidence 34444444444444 6789999999999999999999999999999999999854333222221 22223577
Q ss_pred CcEEEEECCcchhhh
Q psy2609 95 QPILVLNKIDRLILE 109 (161)
Q Consensus 95 p~ilv~NK~Dl~~~~ 109 (161)
.++|++||+||....
T Consensus 113 vImLiGNKsDL~~rR 127 (216)
T KOG0098|consen 113 VIMLIGNKSDLEARR 127 (216)
T ss_pred EEEEEcchhhhhccc
Confidence 788999999997643
No 125
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.46 E-value=1.2e-13 Score=101.76 Aligned_cols=102 Identities=18% Similarity=0.103 Sum_probs=70.9
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH-HHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS-SEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~-~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||+++..+ +.+..+.++.+.....+.+. +..+.+.+|||||+++|. .....+++.+|++++|+|++
T Consensus 12 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (170)
T cd04115 12 NVGKTCLTYRFCAGRFPERTEATIGVDFRERTVEID-----GERIKVQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDVT 86 (170)
T ss_pred CCCHHHHHHHHHhCCCCCccccceeEEEEEEEEEEC-----CeEEEEEEEeCCChHHHHHhhHHHhhcCCCEEEEEEECC
Confidence 58999998654 33444444433333334444 456899999999999987 46788889999999999998
Q ss_pred CCCChhHHHHHH-HHHH----cCCCcEEEEECCcchhh
Q psy2609 76 EGICAQTQVALK-QAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 76 ~~~~~~~~~~~~-~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
+..+.+....|. .+.. .++|+++|+||+|+...
T Consensus 87 ~~~s~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~~ 124 (170)
T cd04115 87 NMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQ 124 (170)
T ss_pred CHHHHHhHHHHHHHHHHhcCCCCCCEEEEEECccchhh
Confidence 765544443332 2222 46899999999998653
No 126
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.46 E-value=1.8e-13 Score=99.92 Aligned_cols=100 Identities=16% Similarity=0.085 Sum_probs=67.9
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
+||||+++..+.. +..+.+. +.....+... +..+.+.+|||||+++|......+++.+|++++|+|.+.
T Consensus 11 ~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (164)
T cd04175 11 GVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQVEVD-----GQQCMLEILDTAGTEQFTAMRDLYMKNGQGFVLVYSITA 84 (164)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEEC-----CEEEEEEEEECCCcccchhHHHHHHhhCCEEEEEEECCC
Confidence 6899999766542 2222221 1111233333 446788999999999999999999999999999999875
Q ss_pred CCChhHH-HHHHHH----HHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQA----WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~----~~~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .++..+ ...++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (164)
T cd04175 85 QSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLED 120 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCcchh
Confidence 4332221 122222 224789999999999965
No 127
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.46 E-value=2e-13 Score=99.07 Aligned_cols=100 Identities=15% Similarity=0.109 Sum_probs=67.4
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.. +..+.+. +.....+... +..+.+.||||||+++|......+++.+|++++|+|.++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 84 (163)
T cd04136 11 GVGKSALTVQFVQGIFVEKYDPTIE-DSYRKQIEVD-----GQQCMLEILDTAGTEQFTAMRDLYIKNGQGFVLVYSITS 84 (163)
T ss_pred CCCHHHHHHHHHhCCCCcccCCchh-hhEEEEEEEC-----CEEEEEEEEECCCccccchHHHHHhhcCCEEEEEEECCC
Confidence 6899998765542 2222221 1112223333 446789999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .++..+. ..++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 120 (163)
T cd04136 85 QSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLED 120 (163)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4332222 1222222 23689999999999864
No 128
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.46 E-value=4.8e-14 Score=106.92 Aligned_cols=101 Identities=22% Similarity=0.133 Sum_probs=69.8
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.. +..++++++.....+.+. +..+.+.||||||++++...+..+++.++++++|+|+++
T Consensus 16 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~l~D~~G~~~~~~~~~~~~~~a~~iilv~D~~~ 90 (199)
T cd04110 16 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-----GERVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTN 90 (199)
T ss_pred CCCHHHHHHHHhcCCCCCCcCccccceeEEEEEEEC-----CEEEEEEEEeCCCchhHHHHHHHHhCCCcEEEEEEECCC
Confidence 6899999866542 333444333332333333 446789999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++..+.. ...|+++|+||+|+..
T Consensus 91 ~~s~~~~~~~~~~i~~~~~~~piivVgNK~Dl~~ 124 (199)
T cd04110 91 GESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPE 124 (199)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 44332222 2222222 3689999999999864
No 129
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.46 E-value=7.9e-14 Score=102.08 Aligned_cols=101 Identities=16% Similarity=0.091 Sum_probs=67.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.++.+.....+.+. +..+++.+|||||++.+......+++.+|++|+|+|+.+
T Consensus 10 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (172)
T cd01862 10 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVTVD-----DKLVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVTN 84 (172)
T ss_pred CCCHHHHHHHHhcCCCCcCcCCccceEEEEEEEEEC-----CEEEEEEEEeCCChHHHHhHHHHHhcCCCEEEEEEECCC
Confidence 689999886654322 2222222222233343 446789999999999999999999999999999999986
Q ss_pred CCChhHHHHHH--HHHH------cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVALK--QAWL------EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~~--~~~~------~~~p~ilv~NK~Dl~~ 107 (161)
..+......|. .... .++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 123 (172)
T cd01862 85 PKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEE 123 (172)
T ss_pred HHHHHHHHHHHHHHHHhcCccCCCCceEEEEEECccccc
Confidence 44322222221 1111 2789999999999974
No 130
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.46 E-value=4.8e-14 Score=102.33 Aligned_cols=101 Identities=19% Similarity=0.124 Sum_probs=70.6
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++.++.. ...+.++.+.....+.+. +...++.+|||||++++......+++.+|++++|+|+++
T Consensus 10 ~~GKTtli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (164)
T smart00175 10 GVGKSSLLSRFTDGKFSEQYKSTIGVDFKTKTIEVD-----GKRVKLQIWDTAGQERFRSITSSYYRGAVGALLVYDITN 84 (164)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-----CEEEEEEEEECCChHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 6899999866532 223344433333344444 445789999999999999999999999999999999986
Q ss_pred CCChhHHHHH-HHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
..+......| ..+.. .++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~l~~~~~~~~~~~pivvv~nK~D~~~ 119 (164)
T smart00175 85 RESFENLKNWLKELREYADPNVVIMLVGNKSDLED 119 (164)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEEchhccc
Confidence 4443332222 22222 4689999999999865
No 131
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.46 E-value=2.5e-13 Score=101.90 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=67.4
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++.++ .++..+.+..+.....+... +..+.+.+|||+|+++|...+..+++.+|++++|+|+++
T Consensus 10 ~vGKTsLi~~~~~~~f~~~~~~T~g~~~~~~~i~~~-----~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~iilv~D~t~ 84 (182)
T cd04128 10 QIGKTSLMVKYVEGEFDEDYIQTLGVNFMEKTISIR-----GTEITFSIWDLGGQREFINMLPLVCNDAVAILFMFDLTR 84 (182)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-----CEEEEEEEEeCCCchhHHHhhHHHCcCCCEEEEEEECcC
Confidence 57999887444 44444444443322334444 457899999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcch
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRL 106 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~ 106 (161)
..+..... ++..+.. ...| |+|+||+|+.
T Consensus 85 ~~s~~~i~~~~~~~~~~~~~~~p-ilVgnK~Dl~ 117 (182)
T cd04128 85 KSTLNSIKEWYRQARGFNKTAIP-ILVGTKYDLF 117 (182)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCE-EEEEEchhcc
Confidence 54433322 2222222 2455 7899999995
No 132
>PTZ00369 Ras-like protein; Provisional
Probab=99.46 E-value=1.3e-13 Score=103.55 Aligned_cols=100 Identities=18% Similarity=0.103 Sum_probs=67.2
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++.++.. +..+.+.... ...+... +..+.+.||||||+++|...+..+++.+|++++|+|+++
T Consensus 15 ~~GKTsLi~~~~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~G~~~~~~l~~~~~~~~d~iilv~D~s~ 88 (189)
T PTZ00369 15 GVGKSALTIQFIQNHFIDEYDPTIEDSY-RKQCVID-----EETCLLDILDTAGQEEYSAMRDQYMRTGQGFLCVYSITS 88 (189)
T ss_pred CCCHHHHHHHHhcCCCCcCcCCchhhEE-EEEEEEC-----CEEEEEEEEeCCCCccchhhHHHHhhcCCEEEEEEECCC
Confidence 6899999755543 2222222111 1222233 446789999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHH----HHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQA----WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~----~~~~~p~ilv~NK~Dl~~ 107 (161)
..+..... +...+ ...++|+++|+||+|+..
T Consensus 89 ~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~Dl~~ 124 (189)
T PTZ00369 89 RSSFEEIASFREQILRVKDKDRVPMILVGNKCDLDS 124 (189)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 54322221 11112 224789999999999864
No 133
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=1.3e-13 Score=114.96 Aligned_cols=100 Identities=23% Similarity=0.155 Sum_probs=87.6
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh-----------HHHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF-----------SSEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~-----------~~~~~~~l~~ 64 (161)
|+||+++++.+..|. .+|.|++.....+.|+ ..++.++||+|..+- ..-+..++..
T Consensus 188 NvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~-------~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~~aI~~ 260 (444)
T COG1160 188 NVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERD-------GRKYVLIDTAGIRRKGKITESVEKYSVARTLKAIER 260 (444)
T ss_pred CCCchHHHHHhccCceEEecCCCCccccceeeeEEEC-------CeEEEEEECCCCCcccccccceEEEeehhhHhHHhh
Confidence 899999998885543 5799999999999988 679999999998542 2237788999
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|.+++|+|+++++..|+..+..++...+.++++|+||+|+...
T Consensus 261 a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~ 304 (444)
T COG1160 261 ADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEE 304 (444)
T ss_pred cCEEEEEEECCCCchHHHHHHHHHHHHcCCCeEEEEEccccCCc
Confidence 99999999999999999999999999999999999999998754
No 134
>PLN03071 GTP-binding nuclear protein Ran; Provisional
Probab=99.45 E-value=1.8e-13 Score=105.57 Aligned_cols=101 Identities=14% Similarity=0.139 Sum_probs=70.1
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+ ..+..+.+..+.....+... +..+.+.+|||||+++|...+..+++.+|++|+|+|.++
T Consensus 23 gvGKTsli~~~~~~~f~~~~~~tig~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilvfD~~~ 97 (219)
T PLN03071 23 GTGKTTFVKRHLTGEFEKKYEPTIGVEVHPLDFFTN-----CGKIRFYCWDTAGQEKFGGLRDGYYIHGQCAIIMFDVTA 97 (219)
T ss_pred CCCHHHHHHHHhhCCCCCccCCccceeEEEEEEEEC-----CeEEEEEEEECCCchhhhhhhHHHcccccEEEEEEeCCC
Confidence 57999987554 33334444333332333333 346899999999999999999999999999999999986
Q ss_pred CCChhHHHHH-HHHH--HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAW--LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~--~~~~p~ilv~NK~Dl~~ 107 (161)
..+......| ..+. ..++|+++|+||+|+..
T Consensus 98 ~~s~~~i~~w~~~i~~~~~~~piilvgNK~Dl~~ 131 (219)
T PLN03071 98 RLTYKNVPTWHRDLCRVCENIPIVLCGNKVDVKN 131 (219)
T ss_pred HHHHHHHHHHHHHHHHhCCCCcEEEEEEchhhhh
Confidence 5443332222 2222 24789999999999864
No 135
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.45 E-value=2.5e-13 Score=100.17 Aligned_cols=100 Identities=16% Similarity=0.153 Sum_probs=68.4
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+..+. ...-|+......+.+. .+.+.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~~~~~t~g~~~~~~~~~-------~~~~~i~D~~G~~~~~~~~~~~~~~a~~ii~V~D~s~~~s 81 (167)
T cd04161 9 NAGKTTLVSALQGEIPKKVAPTVGFTPTKLRLD-------KYEVCIFDLGGGANFRGIWVNYYAEAHGLVFVVDSSDDDR 81 (167)
T ss_pred CCCHHHHHHHHhCCCCccccCcccceEEEEEEC-------CEEEEEEECCCcHHHHHHHHHHHcCCCEEEEEEECCchhH
Confidence 589999876654321 1122333323333333 7899999999999999999999999999999999986432
Q ss_pred hhH-HHHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 80 AQT-QVALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
... ...+..+.. .++|+++|+||+|+...
T Consensus 82 ~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~~ 115 (167)
T cd04161 82 VQEVKEILRELLQHPRVSGKPILVLANKQDKKNA 115 (167)
T ss_pred HHHHHHHHHHHHcCccccCCcEEEEEeCCCCcCC
Confidence 222 222222221 47899999999998653
No 136
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.45 E-value=1.6e-13 Score=119.44 Aligned_cols=64 Identities=36% Similarity=0.444 Sum_probs=60.3
Q ss_pred EEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 43 INLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 43 i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
++|||||||++|...+..+++.+|++++|+|+++++.+++...+..+...++|+++|+||+|+.
T Consensus 73 i~~iDTPG~e~f~~~~~~~~~~aD~~IlVvDa~~g~~~qt~e~i~~~~~~~vpiIvviNK~D~~ 136 (586)
T PRK04004 73 LLFIDTPGHEAFTNLRKRGGALADIAILVVDINEGFQPQTIEAINILKRRKTPFVVAANKIDRI 136 (586)
T ss_pred EEEEECCChHHHHHHHHHhHhhCCEEEEEEECCCCCCHhHHHHHHHHHHcCCCEEEEEECcCCc
Confidence 7999999999999999999999999999999999999999998888888899999999999985
No 137
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.45 E-value=1.5e-13 Score=101.05 Aligned_cols=101 Identities=17% Similarity=0.151 Sum_probs=69.3
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.++.+.....+... +....+.+|||||+++|......+++.+|++++|+|+++
T Consensus 14 ~vGKSsLl~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~il~v~d~~~ 88 (168)
T cd01866 14 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-----GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 88 (168)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECCC
Confidence 689999987775332 1222222222223333 446789999999999999999999999999999999985
Q ss_pred CCChhHHHH-HHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVA-LKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~-~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
..+...... +..+.. .++|+++|+||+|+..
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~pvivv~nK~Dl~~ 123 (168)
T cd01866 89 RETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLES 123 (168)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 433333222 222222 3789999999999974
No 138
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.45 E-value=9.7e-14 Score=101.08 Aligned_cols=100 Identities=18% Similarity=0.147 Sum_probs=66.9
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+... ..+.+. +.....+... +..+.+.+|||||++++......+++.+|++++|+|++.
T Consensus 10 ~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (164)
T smart00173 10 GVGKSALTIQFVQGHFVDDYDPTIE-DSYRKQIEID-----GEVCLLDILDTAGQEEFSAMRDQYMRTGEGFLLVYSITD 83 (164)
T ss_pred CCCHHHHHHHHHhCcCCcccCCchh-hhEEEEEEEC-----CEEEEEEEEECCCcccchHHHHHHHhhCCEEEEEEECCC
Confidence 68999998655432 222222 1111222233 446789999999999999999999999999999999986
Q ss_pred CCChhHHHH-----HHHHHHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVA-----LKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~-----~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
..+...... .+.....++|+++|+||+|+..
T Consensus 84 ~~s~~~~~~~~~~i~~~~~~~~~pii~v~nK~Dl~~ 119 (164)
T smart00173 84 RQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLES 119 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 433222111 1111223689999999999864
No 139
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.45 E-value=4.7e-14 Score=103.23 Aligned_cols=101 Identities=20% Similarity=0.122 Sum_probs=69.5
Q ss_pred ccccccccCCchhHH---HcCCcc--ccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ---ERGITM--KSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~---~~giti--~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
+||||+++..+.... ..+.|+ +.....+.+. +....+.+|||||++++...+..+++.+|++++|+|++.
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (169)
T cd04114 17 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIK-----GEKIKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 91 (169)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCceeeEEEEEEEEEC-----CEEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 689999987764221 223333 2222334444 446789999999999999999999999999999999986
Q ss_pred CCChhHHHHH----HHHHHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL----KQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~----~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+.+......| ......++|+++|+||+|+..
T Consensus 92 ~~s~~~~~~~~~~l~~~~~~~~~~i~v~NK~D~~~ 126 (169)
T cd04114 92 EESFRCLPEWLREIEQYANNKVITILVGNKIDLAE 126 (169)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 5433222222 222234689999999999864
No 140
>PTZ00099 rab6; Provisional
Probab=99.45 E-value=2.5e-13 Score=101.60 Aligned_cols=93 Identities=20% Similarity=0.200 Sum_probs=67.1
Q ss_pred CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH-HHHH
Q psy2609 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV-ALKQ 88 (161)
Q Consensus 10 D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~-~~~~ 88 (161)
+.|.+++.+++..+.....+.+. ++.+++.||||||+++|...+..+++.+|++|+|+|+++..+..... ++..
T Consensus 3 ~~F~~~~~~Tig~~~~~~~~~~~-----~~~v~l~iwDt~G~e~~~~~~~~~~~~ad~~ilv~D~t~~~sf~~~~~w~~~ 77 (176)
T PTZ00099 3 DTFDNNYQSTIGIDFLSKTLYLD-----EGPVRLQLWDTAGQERFRSLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQD 77 (176)
T ss_pred CCcCCCCCCccceEEEEEEEEEC-----CEEEEEEEEECCChHHhhhccHHHhCCCcEEEEEEECCCHHHHHHHHHHHHH
Confidence 45666666666655544444444 55789999999999999999999999999999999998644332222 2222
Q ss_pred H-HH--cCCCcEEEEECCcchh
Q psy2609 89 A-WL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 89 ~-~~--~~~p~ilv~NK~Dl~~ 107 (161)
+ .. .++|++||+||+|+..
T Consensus 78 i~~~~~~~~piilVgNK~DL~~ 99 (176)
T PTZ00099 78 ILNERGKDVIIALVGNKTDLGD 99 (176)
T ss_pred HHHhcCCCCeEEEEEECccccc
Confidence 2 22 3678899999999964
No 141
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.45 E-value=1.1e-13 Score=100.71 Aligned_cols=103 Identities=15% Similarity=0.032 Sum_probs=69.3
Q ss_pred ccccccccCCc-------hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeC
Q psy2609 2 LCMVSSYMDSR-------KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74 (161)
Q Consensus 2 ~~g~~~~~D~~-------~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~ 74 (161)
++|||+++..+ +.+..+++..+.....+... ++...++.+|||||++++...+..+++.+|++++|+|.
T Consensus 10 ~~GKtsl~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~ 85 (164)
T cd04101 10 AVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVD----TDNTVELFIFDSAGQELYSDMVSNYWESPSVFILVYDV 85 (164)
T ss_pred CCCHHHHHHHHhcCCCCcCccCCCceEEEEEEEEEEeC----CCCEEEEEEEECCCHHHHHHHHHHHhCCCCEEEEEEEC
Confidence 58999997544 33333333333222233332 14578999999999999999999999999999999999
Q ss_pred CCCCChhHH-HHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 75 VEGICAQTQ-VALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 75 ~~~~~~~~~-~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
++..+.... .+...+.. .++|+++|+||+|+...
T Consensus 86 ~~~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 122 (164)
T cd04101 86 SNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADK 122 (164)
T ss_pred cCHHHHHHHHHHHHHHHHhCCCCCEEEEEECcccccc
Confidence 854332222 22222222 36899999999998643
No 142
>PLN03118 Rab family protein; Provisional
Probab=99.45 E-value=9.4e-14 Score=106.15 Aligned_cols=101 Identities=20% Similarity=0.108 Sum_probs=69.3
Q ss_pred ccccccccCCchhH----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDE----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+..+ ..+..+.+.....+.+. +..+++.||||||+++|...+..+++.+|++|+|+|+++.
T Consensus 24 ~vGKTsli~~l~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~vlv~D~~~~ 98 (211)
T PLN03118 24 GVGKSSLLVSFISSSVEDLAPTIGVDFKIKQLTVG-----GKRLKLTIWDTAGQERFRTLTSSYYRNAQGIILVYDVTRR 98 (211)
T ss_pred CCCHHHHHHHHHhCCCCCcCCCceeEEEEEEEEEC-----CEEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCCH
Confidence 68999998666432 22333332222233333 4468899999999999999999999999999999999864
Q ss_pred CChhHH-HHHHH-HH----HcCCCcEEEEECCcchh
Q psy2609 78 ICAQTQ-VALKQ-AW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~-~~~~~-~~----~~~~p~ilv~NK~Dl~~ 107 (161)
.+.... ..|.. +. ..++|+++|+||+|+..
T Consensus 99 ~sf~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~ 134 (211)
T PLN03118 99 ETFTNLSDVWGKEVELYSTNQDCVKMLVGNKVDRES 134 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 433332 22221 21 13578999999999864
No 143
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.45 E-value=2e-13 Score=102.62 Aligned_cols=100 Identities=12% Similarity=0.119 Sum_probs=67.0
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+. ++..+.+.... ...+.+. +..+.+.||||||+++|......+++.+|++|+|+|.++
T Consensus 9 ~vGKTsli~~l~~~~f~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~ 82 (190)
T cd04144 9 GVGKTALTIQLCLNHFVETYDPTIEDSY-RKQVVVD-----GQPCMLEVLDTAGQEEYTALRDQWIREGEGFILVYSITS 82 (190)
T ss_pred CCCHHHHHHHHHhCCCCccCCCchHhhE-EEEEEEC-----CEEEEEEEEECCCchhhHHHHHHHHHhCCEEEEEEECCC
Confidence 689999975443 22222222111 1122233 446789999999999999999999999999999999986
Q ss_pred CCChhH-HHHHHHHHH------cCCCcEEEEECCcchh
Q psy2609 77 GICAQT-QVALKQAWL------EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~------~~~p~ilv~NK~Dl~~ 107 (161)
..+... ..++..+.. .++|+++|+||+|+..
T Consensus 83 ~~s~~~~~~~~~~i~~~~~~~~~~~piilvgNK~Dl~~ 120 (190)
T cd04144 83 RSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVY 120 (190)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCCEEEEEEChhccc
Confidence 543332 222222221 3689999999999964
No 144
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.45 E-value=1.7e-13 Score=101.96 Aligned_cols=100 Identities=14% Similarity=0.074 Sum_probs=69.9
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||.++ ..+.++..+.+. +.....+.+. +..+++.||||||++++...+..+++.+|++|+|+|.++
T Consensus 11 ~vGKSsli~~~~~~~f~~~~~~t~~-~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 84 (174)
T cd01871 11 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVD-----GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS 84 (174)
T ss_pred CCCHHHHHHHHhcCCCCCcCCCcce-eeeEEEEEEC-----CEEEEEEEEECCCchhhhhhhhhhcCCCCEEEEEEECCC
Confidence 58999998 455555554442 1111223333 457899999999999999999999999999999999986
Q ss_pred CCChhHH-HHH-HHHH--HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VAL-KQAW--LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~-~~~~--~~~~p~ilv~NK~Dl~~ 107 (161)
.-+.... ..| ..+. ..++|+++|+||+|+..
T Consensus 85 ~~sf~~~~~~~~~~~~~~~~~~piilvgnK~Dl~~ 119 (174)
T cd01871 85 PASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRD 119 (174)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhcc
Confidence 4443332 112 2222 23689999999999964
No 145
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.45 E-value=2e-13 Score=103.02 Aligned_cols=100 Identities=12% Similarity=0.009 Sum_probs=68.5
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||.++..+ +++..+.+.... ...+... +..+.+.+|||||+++|......+++.+|++|+|+|.++
T Consensus 13 ~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~G~e~~~~l~~~~~~~a~~~ilvydit~ 86 (191)
T cd01875 13 AVGKTCLLICYTTNAFPKEYIPTVFDNY-SAQTAVD-----GRTVSLNLWDTAGQEEYDRLRTLSYPQTNVFIICFSIAS 86 (191)
T ss_pred CCCHHHHHHHHHhCCCCcCCCCceEeee-EEEEEEC-----CEEEEEEEEECCCchhhhhhhhhhccCCCEEEEEEECCC
Confidence 47899887443 344444432211 1112222 457899999999999999999999999999999999986
Q ss_pred CCChhHHH-HH-HHHH--HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-AL-KQAW--LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~-~~~~--~~~~p~ilv~NK~Dl~~ 107 (161)
..+..... .| ..+. ..++|++||+||+||..
T Consensus 87 ~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 121 (191)
T cd01875 87 PSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRN 121 (191)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEEeChhhhc
Confidence 54433332 22 2122 24799999999999964
No 146
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.45 E-value=1.1e-13 Score=99.98 Aligned_cols=100 Identities=17% Similarity=0.124 Sum_probs=66.7
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+... ..+.+. ......+... +..+.+.+|||||++++...+..+++.+|++++|+|.++
T Consensus 11 ~vGKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~l~~~~~~~~~~~i~v~~~~~ 84 (162)
T cd04138 11 GVGKSALTIQLIQNHFVDEYDPTIE-DSYRKQVVID-----GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINS 84 (162)
T ss_pred CCCHHHHHHHHHhCCCcCCcCCcch-heEEEEEEEC-----CEEEEEEEEECCCCcchHHHHHHHHhcCCEEEEEEECCC
Confidence 68999998665432 222221 1111222233 345678999999999999999999999999999999985
Q ss_pred CCChhHHH-HHHHHH----HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++..+. ..++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~piivv~nK~Dl~~ 120 (162)
T cd04138 85 RKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAA 120 (162)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 43322221 122222 24789999999999865
No 147
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.45 E-value=1.5e-13 Score=99.76 Aligned_cols=101 Identities=18% Similarity=0.155 Sum_probs=70.0
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..+.++.+.....+... +..+.+.+|||||++++......+++.+|++|+|+|+++
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~ 84 (168)
T cd04119 10 GVGKSCIIKRYCEGRFVSKYLPTIGIDYGVKKVSVR-----NKEVRVNFFDLSGHPEYLEVRNEFYKDTQGVLLVYDVTD 84 (168)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-----CeEEEEEEEECCccHHHHHHHHHHhccCCEEEEEEECCC
Confidence 6899999866543 334444444333344444 457899999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH--------cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL--------EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~--------~~~p~ilv~NK~Dl~~ 107 (161)
..+..... +...+.. .+.|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 124 (168)
T cd04119 85 RQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTK 124 (168)
T ss_pred HHHHHhHHHHHHHHHHhccccccCCCceEEEEEEchhccc
Confidence 43322221 1121111 3588999999999863
No 148
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.45 E-value=2.2e-13 Score=99.04 Aligned_cols=99 Identities=13% Similarity=-0.008 Sum_probs=66.4
Q ss_pred ccccccccCCchhHHHcC--CccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERG--ITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~g--iti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+..+.... -|+......+.+ ...++.+|||||+++|...+..+++.+|++++|+|+++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~ii~v~d~~~~~~ 81 (158)
T cd04151 9 NAGKTTILYRLQLGEVVTTIPTIGFNVETVTY-------KNLKFQVWDLGGQTSIRPYWRCYYSNTDAIIYVVDSTDRDR 81 (158)
T ss_pred CCCHHHHHHHHccCCCcCcCCccCcCeEEEEE-------CCEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEECCCHHH
Confidence 689999987663222111 122222222333 26799999999999999999999999999999999986422
Q ss_pred hh--HHHHHHHHH---HcCCCcEEEEECCcchh
Q psy2609 80 AQ--TQVALKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~--~~~~~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
.. ...+...+. ..++|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 114 (158)
T cd04151 82 LGTAKEELHAMLEEEELKGAVLLVFANKQDMPG 114 (158)
T ss_pred HHHHHHHHHHHHhchhhcCCcEEEEEeCCCCCC
Confidence 11 122222222 14789999999999864
No 149
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.45 E-value=1.3e-13 Score=101.28 Aligned_cols=102 Identities=17% Similarity=0.034 Sum_probs=68.4
Q ss_pred ccccccccCCchhHHHcCC---ccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERGI---TMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~gi---ti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~ 78 (161)
+||||+++..+...+-++. +.........+. +..+++.+|||||++++...+..+++.+|++++|+|+++..
T Consensus 10 ~vGKTsl~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~ad~~ilv~d~~~~~ 84 (166)
T cd01893 10 GVGKSSLIMSLVSEEFPENVPRVLPEITIPADVT-----PERVPTTIVDTSSRPQDRANLAAEIRKANVICLVYSVDRPS 84 (166)
T ss_pred CCCHHHHHHHHHhCcCCccCCCcccceEeeeeec-----CCeEEEEEEeCCCchhhhHHHhhhcccCCEEEEEEECCCHH
Confidence 6899999877654332111 111111222232 45789999999999988888888899999999999998655
Q ss_pred ChhHH-HHH-HHHH--HcCCCcEEEEECCcchhh
Q psy2609 79 CAQTQ-VAL-KQAW--LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 79 ~~~~~-~~~-~~~~--~~~~p~ilv~NK~Dl~~~ 108 (161)
+.... ..| ..+. ..++|+++|+||+|+...
T Consensus 85 s~~~~~~~~~~~i~~~~~~~pviiv~nK~Dl~~~ 118 (166)
T cd01893 85 TLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDG 118 (166)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEchhcccc
Confidence 44332 122 2222 237899999999999654
No 150
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.44 E-value=2.8e-13 Score=99.28 Aligned_cols=102 Identities=16% Similarity=0.107 Sum_probs=68.2
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++.++.... .+.++.+.....+... +...++.+|||||++++...+..+++.+|++++|+|.++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~g~~~~~~~~~~~~~~~~~~l~v~d~~~ 85 (165)
T cd01865 11 SVGKTSFLFRYADDSFTSAFVSTVGIDFKVKTVFRN-----DKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 85 (165)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-----CEEEEEEEEECCChHHHHHHHHHHccCCcEEEEEEECCC
Confidence 689999987664333 2222222221222222 446889999999999999999999999999999999985
Q ss_pred CCChhHH-HHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .+...+.. .+.|+++|+||+|+...
T Consensus 86 ~~s~~~~~~~~~~i~~~~~~~~piivv~nK~Dl~~~ 121 (165)
T cd01865 86 EESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDE 121 (165)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCEEEEEECcccCcc
Confidence 4332221 22222222 36789999999999643
No 151
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.44 E-value=8.7e-14 Score=101.05 Aligned_cols=101 Identities=21% Similarity=0.147 Sum_probs=69.1
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..+..+.+.....+.+. +..+++.+|||||++++.......++.+|++++|+|+++
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~~i~v~d~~~ 84 (161)
T cd01863 10 GVGKSSLLLRFTDDTFDPDLAATIGVDFKVKTLTVD-----GKKVKLAIWDTAGQERFRTLTSSYYRGAQGVILVYDVTR 84 (161)
T ss_pred CCCHHHHHHHHHcCCCCcccCCcccceEEEEEEEEC-----CEEEEEEEEECCCchhhhhhhHHHhCCCCEEEEEEECCC
Confidence 6899999865542 223333333222333343 446889999999999999999999999999999999986
Q ss_pred CCChhHHHHH-HHH----HHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQA----WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~----~~~~~p~ilv~NK~Dl~~ 107 (161)
..+......| ..+ ...++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~~~~~iv~nK~D~~~ 120 (161)
T cd01863 85 RDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKEN 120 (161)
T ss_pred HHHHHhHHHHHHHHHHhCCCCCCcEEEEEECCcccc
Confidence 4433332222 212 235788999999999973
No 152
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.43 E-value=1.6e-13 Score=103.87 Aligned_cols=102 Identities=12% Similarity=0.035 Sum_probs=67.9
Q ss_pred ccccccccCCchhHHH---cCCcc-ccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE---RGITM-KSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~---~giti-~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+....- ..-|+ ......+.+. +..+.+.||||||+.+|......+++.+|++++|+|+++.
T Consensus 9 ~vGKTsll~~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~ad~vilv~d~~~~ 83 (198)
T cd04147 9 GVGKTALIQRFLYDTFEPKYRRTVEEMHRKEYEVG-----GVSLTLDILDTSGSYSFPAMRKLSIQNSDAFALVYAVDDP 83 (198)
T ss_pred CCCHHHHHHHHHhCCCCccCCCchhhheeEEEEEC-----CEEEEEEEEECCCchhhhHHHHHHhhcCCEEEEEEECCCH
Confidence 5899999865543221 11111 2222333444 4457899999999999998888999999999999999864
Q ss_pred CChhHHHHH-HHH----HHcCCCcEEEEECCcchhh
Q psy2609 78 ICAQTQVAL-KQA----WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~~~~~-~~~----~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+......| ..+ ...++|+++|+||+|+...
T Consensus 84 ~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 119 (198)
T cd04147 84 ESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEE 119 (198)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEccccccc
Confidence 333222211 111 1247999999999999653
No 153
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.43 E-value=2.6e-13 Score=100.33 Aligned_cols=97 Identities=15% Similarity=0.077 Sum_probs=66.1
Q ss_pred ccccccccCCchhHH----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+..+. .++++.. ...+.+ .++++.+|||||++++...+..+++.+|++|+|+|+++.
T Consensus 19 ~~GKTsli~~l~~~~~~~~~~t~g~~--~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~a~~ii~v~D~t~~ 89 (168)
T cd04149 19 AAGKTTILYKLKLGQSVTTIPTVGFN--VETVTY-------KNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADR 89 (168)
T ss_pred CCCHHHHHHHHccCCCccccCCcccc--eEEEEE-------CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCch
Confidence 689999976654321 2222222 222222 378999999999999999999999999999999999864
Q ss_pred CChhH-HHHH-HHHH---HcCCCcEEEEECCcchh
Q psy2609 78 ICAQT-QVAL-KQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~~~~-~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
.+... ...+ ..+. ..++|++||+||+|+..
T Consensus 90 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 124 (168)
T cd04149 90 DRIDEARQELHRIINDREMRDALLLVFANKQDLPD 124 (168)
T ss_pred hhHHHHHHHHHHHhcCHhhcCCcEEEEEECcCCcc
Confidence 32221 1222 2221 24689999999999864
No 154
>KOG0095|consensus
Probab=99.43 E-value=1.4e-12 Score=94.48 Aligned_cols=99 Identities=20% Similarity=0.111 Sum_probs=69.2
Q ss_pred cccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 5 VSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 5 ~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
|+-++-+| |.-+...|.++....++..+ +++.++.||||+|+++|++.+.+||+.|++.|+|+|.+-.++
T Consensus 20 ktclvrrftqglfppgqgatigvdfmiktvev~-----gekiklqiwdtagqerfrsitqsyyrsahalilvydiscqps 94 (213)
T KOG0095|consen 20 KTCLVRRFTQGLFPPGQGATIGVDFMIKTVEVN-----GEKIKLQIWDTAGQERFRSITQSYYRSAHALILVYDISCQPS 94 (213)
T ss_pred cchhhhhhhccCCCCCCCceeeeeEEEEEEEEC-----CeEEEEEEeeccchHHHHHHHHHHhhhcceEEEEEecccCcc
Confidence 55544333 44443344445444555555 679999999999999999999999999999999999986665
Q ss_pred hhHHH-HHHHHH---HcCCCcEEEEECCcchhh
Q psy2609 80 AQTQV-ALKQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~~~-~~~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
..-.. +++.+. ..++-.|+|+||+|+...
T Consensus 95 fdclpewlreie~yan~kvlkilvgnk~d~~dr 127 (213)
T KOG0095|consen 95 FDCLPEWLREIEQYANNKVLKILVGNKIDLADR 127 (213)
T ss_pred hhhhHHHHHHHHHHhhcceEEEeeccccchhhh
Confidence 33322 222222 234556899999999754
No 155
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.43 E-value=3.4e-13 Score=101.33 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=69.4
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||.++.++ ..+..+.+.... ...+... ++.+.+.+|||+|+++|......+++.+|++++|+|.++
T Consensus 15 ~vGKTsli~~~~~~~f~~~~~pT~~~~~-~~~~~~~-----~~~~~l~iwDtaG~e~~~~~~~~~~~~ad~~ilvyDit~ 88 (182)
T cd04172 15 QCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-----TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR 88 (182)
T ss_pred CCCHHHHHHHHHhCCCCCccCCceeeee-EEEEEEC-----CEEEEEEEEECCCchhhHhhhhhhcCCCCEEEEEEECCC
Confidence 47899887544 344444443221 1223333 557899999999999999999999999999999999986
Q ss_pred CCChhHH-HHH-HHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VAL-KQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~-~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+.... ..| ..+.. .+.|++||+||+||..
T Consensus 89 ~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 123 (182)
T cd04172 89 PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 123 (182)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEeEChhhhc
Confidence 5544432 222 22222 3689999999999853
No 156
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.43 E-value=2.9e-13 Score=100.79 Aligned_cols=101 Identities=15% Similarity=0.079 Sum_probs=68.8
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+ +.+..+.+..... ..+.+. ++.+++.+|||||+++|...+..+++.+|++|+|+|.++
T Consensus 11 ~vGKTsl~~~~~~~~f~~~~~pt~~~~~~-~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilv~d~~~ 84 (175)
T cd01874 11 AVGKTCLLISYTTNKFPSEYVPTVFDNYA-VTVMIG-----GEPYTLGLFDTAGQEDYDRLRPLSYPQTDVFLVCFSVVS 84 (175)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeeeE-EEEEEC-----CEEEEEEEEECCCccchhhhhhhhcccCCEEEEEEECCC
Confidence 57899887444 3344444432211 123333 446899999999999999988999999999999999986
Q ss_pred CCChhHH-H-HHHHHH--HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-V-ALKQAW--LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~-~~~~~~--~~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... . +...+. ..++|+++|+||+|+...
T Consensus 85 ~~s~~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~~ 120 (175)
T cd01874 85 PSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDD 120 (175)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhhC
Confidence 5443332 1 222222 237899999999998653
No 157
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.43 E-value=3.8e-13 Score=98.58 Aligned_cols=101 Identities=16% Similarity=0.063 Sum_probs=67.3
Q ss_pred ccccccccCCchhHH---HcCCccccceE-EEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ---ERGITMKSSSI-SLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~---~~giti~~~~~-~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+.... ..-.|+..... .+.+. .+.+.+.+|||||+++|......+++.+|++++|+|.+..
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~t~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~~ 85 (165)
T cd04140 11 GVGKSSLVLRFVKGTFRESYIPTIEDTYRQVISCS-----KNICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSVTSK 85 (165)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCcchheEEEEEEEC-----CEEEEEEEEECCCCCcchHHHHHHhhcCCEEEEEEECCCH
Confidence 689999986654322 11111211111 12222 3467899999999999999999999999999999999865
Q ss_pred CChhH-HHHHHHHHH------cCCCcEEEEECCcchh
Q psy2609 78 ICAQT-QVALKQAWL------EKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~~~~~~~~~------~~~p~ilv~NK~Dl~~ 107 (161)
.+... ..++..+.. .++|+++|+||+|+..
T Consensus 86 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 122 (165)
T cd04140 86 QSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESH 122 (165)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEECccccc
Confidence 44332 222232322 4689999999999965
No 158
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.42 E-value=4.2e-13 Score=104.03 Aligned_cols=100 Identities=13% Similarity=0.097 Sum_probs=71.0
Q ss_pred ccccccccC-----CchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMD-----SRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D-----~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||.++. .+++++.+++..... ..+.+. +..+.+.||||+|+++|......+++.+|++|+|+|.++
T Consensus 11 ~vGKTsLi~~~~~~~f~~~y~pTi~~~~~-~~~~~~-----~~~v~L~iwDt~G~e~~~~l~~~~~~~~d~illvfdis~ 84 (222)
T cd04173 11 ECGKTALLQVFAKDAYPGSYVPTVFENYT-ASFEID-----KRRIELNMWDTSGSSYYDNVRPLAYPDSDAVLICFDISR 84 (222)
T ss_pred CCCHHHHHHHHHcCCCCCccCCccccceE-EEEEEC-----CEEEEEEEEeCCCcHHHHHHhHHhccCCCEEEEEEECCC
Confidence 578998874 455566665543321 233343 557899999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHH-HH--HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQ-AW--LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~-~~--~~~~p~ilv~NK~Dl~~ 107 (161)
.-+.... ..|.. .. ..++|+|||+||+|+..
T Consensus 85 ~~Sf~~i~~~w~~~~~~~~~~~piiLVgnK~DL~~ 119 (222)
T cd04173 85 PETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRT 119 (222)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEEECccccc
Confidence 5433332 22321 11 24789999999999954
No 159
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.42 E-value=2.8e-13 Score=101.34 Aligned_cols=100 Identities=12% Similarity=0.065 Sum_probs=69.1
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++..+ +.+..+.+.... ...+... ++.+.+.+|||||+++|......+++.+|++|+|+|.++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~t~~~~~-~~~~~~~-----~~~~~l~iwDt~G~~~~~~~~~~~~~~a~~~ilvfdit~ 84 (178)
T cd04131 11 QCGKTALLQVFAKDCYPETYVPTVFENY-TASFEID-----EQRIELSLWDTSGSPYYDNVRPLCYPDSDAVLICFDISR 84 (178)
T ss_pred CCCHHHHHHHHHhCcCCCCcCCceEEEE-EEEEEEC-----CEEEEEEEEECCCchhhhhcchhhcCCCCEEEEEEECCC
Confidence 57899987544 334434332221 1223333 557899999999999999999999999999999999986
Q ss_pred CCChhHH-HHH-HHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VAL-KQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~-~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+.... ..| ..+.. .++|+++|+||+||..
T Consensus 85 ~~Sf~~~~~~w~~~i~~~~~~~~iilVgnK~DL~~ 119 (178)
T cd04131 85 PETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRT 119 (178)
T ss_pred hhhHHHHHHHHHHHHHHHCCCCCEEEEEEChhhhc
Confidence 5554432 222 22222 4789999999999853
No 160
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.42 E-value=2.5e-13 Score=100.40 Aligned_cols=99 Identities=18% Similarity=0.144 Sum_probs=66.1
Q ss_pred ccccccccCCchhHHHc--CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER--GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~--giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+..+.-. .-|+......+.+. .+++.+|||||++++...+..+++.+|++++|+|++...+
T Consensus 24 ~~GKTsL~~~l~~~~~~~~~~t~g~~~~~~~~~-------~~~l~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 96 (173)
T cd04154 24 NAGKTTILKKLLGEDIDTISPTLGFQIKTLEYE-------GYKLNIWDVGGQKTLRPYWRNYFESTDALIWVVDSSDRLR 96 (173)
T ss_pred CCCHHHHHHHHccCCCCCcCCccccceEEEEEC-------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCCHHH
Confidence 68999987655432111 11222222233333 6789999999999999999999999999999999986532
Q ss_pred hhH-HHHH-HHH---HHcCCCcEEEEECCcchh
Q psy2609 80 AQT-QVAL-KQA---WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~-~~~~-~~~---~~~~~p~ilv~NK~Dl~~ 107 (161)
... ...+ ..+ ...++|+++|+||+|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~iiv~nK~Dl~~ 129 (173)
T cd04154 97 LDDCKRELKELLQEERLAGATLLILANKQDLPG 129 (173)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEEECccccc
Confidence 211 1111 111 225789999999999864
No 161
>PLN03110 Rab GTPase; Provisional
Probab=99.42 E-value=2e-13 Score=105.03 Aligned_cols=101 Identities=16% Similarity=0.083 Sum_probs=71.2
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++||++++..+. .+..+.+.++.....+.+. +..+++.+|||||+++|......+++.++++|+|+|.++
T Consensus 22 ~vGKStLi~~l~~~~~~~~~~~t~g~~~~~~~v~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~~~~ilv~d~~~ 96 (216)
T PLN03110 22 GVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVE-----GKTVKAQIWDTAGQERYRAITSAYYRGAVGALLVYDITK 96 (216)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEEC-----CEEEEEEEEECCCcHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 589999985543 3333444444333444444 446899999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++..+.. .++|+++|+||+|+..
T Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 131 (216)
T PLN03110 97 RQTFDNVQRWLRELRDHADSNIVIMMAGNKSDLNH 131 (216)
T ss_pred hHHHHHHHHHHHHHHHhCCCCCeEEEEEEChhccc
Confidence 44333322 2222222 4789999999999854
No 162
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.42 E-value=2.8e-13 Score=98.15 Aligned_cols=99 Identities=16% Similarity=0.080 Sum_probs=67.6
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+.... +...|+......+.+. ...+.+|||||++++......+++.+|++++|+|++.+..
T Consensus 9 ~~GKssli~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~D~~~~~~ 81 (158)
T cd00878 9 GAGKTTILYKLKLGEVVTTIPTIGFNVETVEYK-------NVSFTVWDVGGQDKIRPLWKHYYENTNGIIFVVDSSDRER 81 (158)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcCcceEEEEEC-------CEEEEEEECCCChhhHHHHHHHhccCCEEEEEEECCCHHH
Confidence 589999976653221 1222333333334443 6799999999999999999999999999999999986422
Q ss_pred hh-HHHHHHH----HHHcCCCcEEEEECCcchh
Q psy2609 80 AQ-TQVALKQ----AWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~-~~~~~~~----~~~~~~p~ilv~NK~Dl~~ 107 (161)
.. ....+.. ....+.|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~piiiv~nK~D~~~ 114 (158)
T cd00878 82 IEEAKEELHKLLNEEELKGVPLLIFANKQDLPG 114 (158)
T ss_pred HHHHHHHHHHHHhCcccCCCcEEEEeeccCCcc
Confidence 11 1122221 1235789999999999875
No 163
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.42 E-value=4.2e-13 Score=100.58 Aligned_cols=99 Identities=15% Similarity=0.066 Sum_probs=67.8
Q ss_pred ccccccccCCchhHHHc--CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER--GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~--giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
+||||+++..+..+.-. .-|.......+.+. ++++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 27 ~~GKTsli~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~~~D~~G~~~~~~~~~~~~~~ad~ii~vvD~~~~~~ 99 (184)
T smart00178 27 NAGKTTLLHMLKNDRLAQHQPTQHPTSEELAIG-------NIKFTTFDLGGHQQARRLWKDYFPEVNGIVYLVDAYDKER 99 (184)
T ss_pred CCCHHHHHHHHhcCCCcccCCccccceEEEEEC-------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECCcHHH
Confidence 68999998777654211 11222222333333 6899999999999999999999999999999999986422
Q ss_pred hhH-H-HHHHHH---HHcCCCcEEEEECCcchh
Q psy2609 80 AQT-Q-VALKQA---WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~-~-~~~~~~---~~~~~p~ilv~NK~Dl~~ 107 (161)
... . .+...+ ...++|+++|+||+|+..
T Consensus 100 ~~~~~~~l~~l~~~~~~~~~piliv~NK~Dl~~ 132 (184)
T smart00178 100 FAESKRELDALLSDEELATVPFLILGNKIDAPY 132 (184)
T ss_pred HHHHHHHHHHHHcChhhcCCCEEEEEeCccccC
Confidence 111 1 121222 125789999999999863
No 164
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.42 E-value=5.8e-13 Score=97.46 Aligned_cols=97 Identities=15% Similarity=0.062 Sum_probs=65.2
Q ss_pred ccccccccCCchhH----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDE----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++.++... ..+.+. .....+.+ ..+++.+|||||++++...+..+++.+|++++|+|+++.
T Consensus 10 ~~GKTsli~~l~~~~~~~~~pt~g--~~~~~~~~-------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~~i~v~D~~~~ 80 (159)
T cd04150 10 AAGKTTILYKLKLGEIVTTIPTIG--FNVETVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 80 (159)
T ss_pred CCCHHHHHHHHhcCCCcccCCCCC--cceEEEEE-------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 68999987665321 122222 22222222 278999999999999999999999999999999999853
Q ss_pred CChhH-HHHHHHH-H---HcCCCcEEEEECCcchh
Q psy2609 78 ICAQT-QVALKQA-W---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~~~~~~~-~---~~~~p~ilv~NK~Dl~~ 107 (161)
.+... ...+..+ . ..+.|+++++||+|+..
T Consensus 81 ~s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 115 (159)
T cd04150 81 ERIGEAREELQRMLNEDELRDAVLLVFANKQDLPN 115 (159)
T ss_pred HHHHHHHHHHHHHHhcHHhcCCCEEEEEECCCCCC
Confidence 22111 1222222 1 13589999999999864
No 165
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.42 E-value=3.8e-13 Score=100.65 Aligned_cols=102 Identities=14% Similarity=0.092 Sum_probs=67.2
Q ss_pred ccccccccCCchhHH----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+.... .+.++.......+... ++....+.+|||||+++|...+..+++.+|++++|+|+++.
T Consensus 13 ~~GKTsli~~~~~~~~~~~~~t~~~~~~~~~~~~~----~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 88 (183)
T cd04152 13 SAGKTTVLYRLKFNEFVNTVPTKGFNTEKIKVSLG----NSKGITFHFWDVGGQEKLRPLWKSYTRCTDGIVFVVDSVDV 88 (183)
T ss_pred CCCHHHHHHHHhcCCcCCcCCccccceeEEEeecc----CCCceEEEEEECCCcHhHHHHHHHHhccCCEEEEEEECCCH
Confidence 689999986664321 1212222222222221 13468999999999999999999999999999999999864
Q ss_pred CChhHH-----HHHHHHHHcCCCcEEEEECCcchh
Q psy2609 78 ICAQTQ-----VALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~-----~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
-..... .+.......++|+++|+||+|+..
T Consensus 89 ~~~~~~~~~~~~i~~~~~~~~~p~iiv~NK~D~~~ 123 (183)
T cd04152 89 ERMEEAKTELHKITRFSENQGVPVLVLANKQDLPN 123 (183)
T ss_pred HHHHHHHHHHHHHHhhhhcCCCcEEEEEECcCccc
Confidence 222111 122222335799999999999863
No 166
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.42 E-value=2.8e-13 Score=101.36 Aligned_cols=100 Identities=11% Similarity=0.054 Sum_probs=70.2
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||.++ ..+..+..+.+.... ...+... +..+++.||||+|+++|......+++.+|++|+|+|.++
T Consensus 11 ~vGKTsli~~~~~~~f~~~~~~Ti~~~~-~~~~~~~-----~~~v~l~i~Dt~G~~~~~~~~~~~~~~a~~~ilvyd~~~ 84 (176)
T cd04133 11 AVGKTCMLICYTSNKFPTDYIPTVFDNF-SANVSVD-----GNTVNLGLWDTAGQEDYNRLRPLSYRGADVFVLAFSLIS 84 (176)
T ss_pred CCcHHHHHHHHhcCCCCCCCCCcceeee-EEEEEEC-----CEEEEEEEEECCCCccccccchhhcCCCcEEEEEEEcCC
Confidence 46888876 445555555443221 1122233 557899999999999999999999999999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .++..+.. .++|++||+||+|+..
T Consensus 85 ~~Sf~~~~~~w~~~i~~~~~~~piilvgnK~Dl~~ 119 (176)
T cd04133 85 RASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRD 119 (176)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhcc
Confidence 5554442 22333322 4789999999999954
No 167
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.41 E-value=1.6e-13 Score=100.37 Aligned_cols=103 Identities=17% Similarity=0.075 Sum_probs=64.4
Q ss_pred CccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEE
Q psy2609 1 MLCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGT 68 (161)
Q Consensus 1 ~~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~ 68 (161)
.+||||++++.+..+. .++.|+......+.+. ...++.||||||+.+ +.......+..+|++
T Consensus 9 ~~~GKStl~~~l~~~~~~v~~~~~~t~~~~~~~~~~~------~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~d~v 82 (170)
T cd01898 9 PNAGKSTLLSAISNAKPKIADYPFTTLVPNLGVVRVD------DGRSFVVADIPGLIEGASEGKGLGHRFLRHIERTRLL 82 (170)
T ss_pred CCCCHHHHHHHHhcCCccccCCCccccCCcceEEEcC------CCCeEEEEecCcccCcccccCCchHHHHHHHHhCCEE
Confidence 3799999998886543 1344444333333333 124899999999732 233344456679999
Q ss_pred EEEEeCCCC-CChhHH-HHHHHHHH-----cCCCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEG-ICAQTQ-VALKQAWL-----EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~-~~~~~~-~~~~~~~~-----~~~p~ilv~NK~Dl~~~~ 109 (161)
++|+|++.. -..... .+.+.+.. .++|+++|+||+|+....
T Consensus 83 i~v~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~p~ivv~NK~Dl~~~~ 130 (170)
T cd01898 83 LHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEE 130 (170)
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHhCccccccccEEEEEchhcCCch
Confidence 999999865 222222 22222222 368999999999986543
No 168
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.41 E-value=6e-13 Score=118.38 Aligned_cols=100 Identities=20% Similarity=0.128 Sum_probs=78.5
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh----------hHHH-HHHHHHh
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD----------FSSE-VSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~----------~~~~-~~~~l~~ 64 (161)
|+|||++++.+..+. .+|.|++.....+.+. +.++.||||||+.+ |... +..+++.
T Consensus 460 nvGKSSLin~l~~~~~~~v~~~~gtT~d~~~~~~~~~-------~~~~~liDTaG~~~~~~~~~~~e~~~~~r~~~~i~~ 532 (712)
T PRK09518 460 NVGKSSLLNQLTHEERAVVNDLAGTTRDPVDEIVEID-------GEDWLFIDTAGIKRRQHKLTGAEYYSSLRTQAAIER 532 (712)
T ss_pred CCCHHHHHHHHhCccccccCCCCCCCcCcceeEEEEC-------CCEEEEEECCCcccCcccchhHHHHHHHHHHHHhhc
Confidence 799999997775543 4688887766666665 45788999999642 2221 3456789
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|++++|+|++.+.+.++..++..+...++|+++|+||+|+...
T Consensus 533 advvilViDat~~~s~~~~~i~~~~~~~~~piIiV~NK~DL~~~ 576 (712)
T PRK09518 533 SELALFLFDASQPISEQDLKVMSMAVDAGRALVLVFNKWDLMDE 576 (712)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 99999999999999888888888777789999999999999653
No 169
>PRK14845 translation initiation factor IF-2; Provisional
Probab=99.41 E-value=6.6e-13 Score=121.12 Aligned_cols=105 Identities=27% Similarity=0.286 Sum_probs=86.4
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCC-----------CCCceeEEEEeCCCchhhHHHHHHHHHhc
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKD-----------TPEEYLINLIDSPGHVDFSSEVSTAVRLC 65 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~-----------~~~~~~i~iiDTpG~~~~~~~~~~~l~~~ 65 (161)
+.+||+++|... ++...|||.......+.+..... ..+.-.+.|||||||+.|......+++.+
T Consensus 471 ~~~KTtLLD~iR~t~v~~~EaGGITQ~IGa~~v~~~~~~~~~~~~~~~~~~~~~~p~i~fiDTPGhe~F~~lr~~g~~~a 550 (1049)
T PRK14845 471 LVHNTTLLDKIRKTRVAKKEAGGITQHIGATEIPIDVIKKICGPLLKLLKAEIKIPGLLFIDTPGHEAFTSLRKRGGSLA 550 (1049)
T ss_pred ecccccHHHHHhCCCcccccCCCceeccceEEEEecccccccccccccccccCCcCcEEEEECCCcHHHHHHHHhhcccC
Confidence 346899998875 55677999999988887752100 00112389999999999999888889999
Q ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
|++++|+|+++++.+++.+.+..+...++|+++|+||+|+.
T Consensus 551 DivlLVVDa~~Gi~~qT~e~I~~lk~~~iPiIVViNKiDL~ 591 (1049)
T PRK14845 551 DLAVLVVDINEGFKPQTIEAINILRQYKTPFVVAANKIDLI 591 (1049)
T ss_pred CEEEEEEECcccCCHhHHHHHHHHHHcCCCEEEEEECCCCc
Confidence 99999999999999999999988888899999999999985
No 170
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.41 E-value=4.9e-13 Score=99.75 Aligned_cols=102 Identities=11% Similarity=-0.026 Sum_probs=67.1
Q ss_pred ccccccccCCchhHHHc---CCccccceE-EEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER---GITMKSSSI-SLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~---giti~~~~~-~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+..+.-. .-|+..... .+... ++..+.+.+|||||+++|......+++.+|++++|+|+++.
T Consensus 10 ~vGKTsli~~l~~~~~~~~~~~t~~~~~~~~i~~~----~~~~~~l~i~Dt~G~~~~~~~~~~~~~~ad~ii~v~d~~~~ 85 (187)
T cd04132 10 GCGKTCLLIVYSQGKFPEEYVPTVFENYVTNIQGP----NGKIIELALWDTAGQEEYDRLRPLSYPDVDVLLICYAVDNP 85 (187)
T ss_pred CCCHHHHHHHHHhCcCCCCCCCeeeeeeEEEEEec----CCcEEEEEEEECCCchhHHHHHHHhCCCCCEEEEEEECCCH
Confidence 58999998665433211 112211111 11111 14467899999999999999999999999999999999864
Q ss_pred CChhHHH-HH-HHHH--HcCCCcEEEEECCcchh
Q psy2609 78 ICAQTQV-AL-KQAW--LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~~-~~-~~~~--~~~~p~ilv~NK~Dl~~ 107 (161)
.+..... .| .... ..++|+++|+||+|+..
T Consensus 86 ~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (187)
T cd04132 86 TSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRK 119 (187)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEeChhhhh
Confidence 4333321 12 1122 24789999999999864
No 171
>PLN00223 ADP-ribosylation factor; Provisional
Probab=99.40 E-value=7.4e-13 Score=99.19 Aligned_cols=98 Identities=15% Similarity=0.055 Sum_probs=66.1
Q ss_pred ccccccccCCchh----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKD----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++.++.. +..+++.. ....+.+ +.+.+.+|||||++++...+..+++.+|++|+|+|+++.
T Consensus 27 ~~GKTsl~~~l~~~~~~~~~pt~g~--~~~~~~~-------~~~~~~i~D~~Gq~~~~~~~~~~~~~a~~iI~V~D~s~~ 97 (181)
T PLN00223 27 AAGKTTILYKLKLGEIVTTIPTIGF--NVETVEY-------KNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDR 97 (181)
T ss_pred CCCHHHHHHHHccCCCccccCCcce--eEEEEEE-------CCEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEeCCcH
Confidence 6899988755532 12222222 2222333 378999999999999999999999999999999999854
Q ss_pred CChhH-HHHHH-HHH---HcCCCcEEEEECCcchhh
Q psy2609 78 ICAQT-QVALK-QAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~-~~~~~-~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
.+... ...+. .+. ..++|+++|+||+|+...
T Consensus 98 ~s~~~~~~~l~~~l~~~~~~~~piilv~NK~Dl~~~ 133 (181)
T PLN00223 98 DRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNA 133 (181)
T ss_pred HHHHHHHHHHHHHhcCHhhCCCCEEEEEECCCCCCC
Confidence 32221 11122 211 137899999999998653
No 172
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.40 E-value=9.3e-14 Score=102.66 Aligned_cols=100 Identities=16% Similarity=0.063 Sum_probs=67.4
Q ss_pred ccccccccCC-----chhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDS-----RKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~-----~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++.. +..+..+.. .+.-...+... +..+++.+|||||++++......+++.+|++|+|+|.++
T Consensus 10 ~~GKtsl~~~~~~~~~~~~~~~t~-~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~a~~~i~v~d~~~ 83 (173)
T cd04130 10 AVGKTSLIVSYTTNGYPTEYVPTA-FDNFSVVVLVD-----GKPVRLQLCDTAGQDEFDKLRPLCYPDTDVFLLCFSVVN 83 (173)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCce-eeeeeEEEEEC-----CEEEEEEEEECCCChhhccccccccCCCcEEEEEEECCC
Confidence 5899998833 333333322 12111222233 446789999999999999888889999999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+.+.. .++..+.. .++|+++|+||+|+..
T Consensus 84 ~~sf~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 118 (173)
T cd04130 84 PSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRT 118 (173)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEeeChhhcc
Confidence 5443332 23333332 4689999999999864
No 173
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.40 E-value=8.5e-13 Score=102.95 Aligned_cols=100 Identities=10% Similarity=0.052 Sum_probs=69.5
Q ss_pred ccccccccCC-----chhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDS-----RKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~-----~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||.++.. +..+..+.+..... ..+... +..+.+.||||||+++|......+++.+|++|+|+|.++
T Consensus 23 ~VGKTsLi~r~~~~~F~~~y~pTi~~~~~-~~i~~~-----~~~v~l~iwDTaG~e~~~~~~~~~~~~ad~vIlVyDit~ 96 (232)
T cd04174 23 QCGKTAMLQVLAKDCYPETYVPTVFENYT-AGLETE-----EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR 96 (232)
T ss_pred CCcHHHHHHHHhcCCCCCCcCCceeeeeE-EEEEEC-----CEEEEEEEEeCCCchhhHHHHHHHcCCCcEEEEEEECCC
Confidence 4788888744 44444444433221 223333 557899999999999999999999999999999999986
Q ss_pred CCChhH-H-HHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQT-Q-VALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~-~-~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+... . .++..+.. .++|+|||+||+|+..
T Consensus 97 ~~Sf~~~~~~w~~~i~~~~~~~piilVgNK~DL~~ 131 (232)
T cd04174 97 PETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRT 131 (232)
T ss_pred hHHHHHHHHHHHHHHHHhCCCCCEEEEEECccccc
Confidence 554433 1 22222222 4789999999999853
No 174
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.40 E-value=1.4e-12 Score=94.85 Aligned_cols=101 Identities=24% Similarity=0.195 Sum_probs=73.0
Q ss_pred CccccccccCCchh------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh----------H-HHHHHHHH
Q psy2609 1 MLCMVSSYMDSRKD------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF----------S-SEVSTAVR 63 (161)
Q Consensus 1 ~~~g~~~~~D~~~~------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~----------~-~~~~~~l~ 63 (161)
.++|||++++.+-. +..++.+.......+.+. +..+.+|||||+.+. . .....+++
T Consensus 11 ~~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~iiDtpG~~~~~~~~~~~e~~~~~~~~~~~~ 83 (174)
T cd01895 11 PNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYD-------GKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLKAIE 83 (174)
T ss_pred CCCCHHHHHHHHhCccceeccCCCCCccCceeeEEEEC-------CeeEEEEECCCCccccchhccHHHHHHHHHHHHHh
Confidence 36899999876633 224555555444444444 457899999997443 1 12345678
Q ss_pred hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 64 LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 64 ~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+|++++|+|+..+.......++......+.|+++++||+|+...
T Consensus 84 ~~d~vi~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~~ 128 (174)
T cd01895 84 RADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEK 128 (174)
T ss_pred hcCeEEEEEeCCCCcchhHHHHHHHHHhcCCCEEEEEeccccCCc
Confidence 999999999999887777777777776678999999999998754
No 175
>KOG0086|consensus
Probab=99.40 E-value=2.8e-13 Score=98.39 Aligned_cols=70 Identities=20% Similarity=0.146 Sum_probs=55.0
Q ss_pred CCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH----HHHHHcCCCcEEEEECCcchh
Q psy2609 38 PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL----KQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~----~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++.++++||||+|+++|++.+++||++|-++++|+|++..-+......| +.+...++-+|+|+||.||..
T Consensus 55 gK~vKLQIWDTAGQErFRSVtRsYYRGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~ 128 (214)
T KOG0086|consen 55 GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDP 128 (214)
T ss_pred CcEEEEEEeecccHHHHHHHHHHHhccccceEEEEeccchhhHHHHHHHHHHHHhhCCCcEEEEEeCChhhcCh
Confidence 6789999999999999999999999999999999999854333222222 223335667789999999964
No 176
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.40 E-value=8.8e-13 Score=101.19 Aligned_cols=102 Identities=12% Similarity=-0.026 Sum_probs=69.9
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+. .+..+.++.+.....+.+.. +..+.+.||||||++.+......+++.+|++|+|+|+++
T Consensus 10 ~vGKSsLi~~l~~~~~~~~~~~T~~~d~~~~~i~~~~----~~~~~~~i~Dt~G~~~~~~l~~~~~~~ad~iilV~D~t~ 85 (215)
T cd04109 10 AVGKTSLCRRFAKEGFGKSYKQTIGLDFFSKRVTLPG----NLNVTLQVWDIGGQSIGGKMLDKYIYGAHAVFLVYDVTN 85 (215)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeEEEEEEEEEeCC----CCEEEEEEEECCCcHHHHHHHHHHhhcCCEEEEEEECCC
Confidence 689999986664 33444444443333343331 246899999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH------cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL------EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~------~~~p~ilv~NK~Dl~~ 107 (161)
..+..... +...+.. .+.|+++|+||+|+..
T Consensus 86 ~~s~~~~~~w~~~l~~~~~~~~~~~piilVgNK~DL~~ 123 (215)
T cd04109 86 SQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEH 123 (215)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCceEEEEEECccccc
Confidence 43332222 2222222 2457889999999963
No 177
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.40 E-value=6.4e-13 Score=99.72 Aligned_cols=101 Identities=12% Similarity=0.048 Sum_probs=67.5
Q ss_pred ccccccccCCchhHHH----cCCccccce--EEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRKDEQE----RGITMKSSS--ISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~----~giti~~~~--~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||+++..+...+- ..-|+.... ..+... +..+.+.+|||||++++......+++.+|++++|+|++
T Consensus 10 ~vGKSsLi~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~D~~G~~~~~~~~~~~~~~~d~iilv~d~~ 84 (193)
T cd04118 10 SVGKTSLVERYVHHRFLVGPYQNTIGAAFVAKRMVVG-----ERVVTLGIWDTAGSERYEAMSRIYYRGAKAAIVCYDLT 84 (193)
T ss_pred CCCHHHHHHHHHhCCcCCcCcccceeeEEEEEEEEEC-----CEEEEEEEEECCCchhhhhhhHhhcCCCCEEEEEEECC
Confidence 6899999876653221 111222111 223333 45678999999999999988889999999999999998
Q ss_pred CCCChhHH-HHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 76 EGICAQTQ-VALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 76 ~~~~~~~~-~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
+..+.... .++..+.. .++|+++|+||+|+..
T Consensus 85 ~~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 119 (193)
T cd04118 85 DSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIE 119 (193)
T ss_pred CHHHHHHHHHHHHHHHhcCCCCCEEEEEEcccccc
Confidence 64333221 22233332 3689999999999864
No 178
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.40 E-value=7e-13 Score=98.55 Aligned_cols=99 Identities=17% Similarity=0.075 Sum_probs=65.9
Q ss_pred ccccccccCCchh-HH-HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKD-EQ-ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~-E~-~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+.. +. ...-|+......+.+. ..++.+|||||++++...+..+++.+|++|+|+|+++..+
T Consensus 23 ~~GKTsL~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~l~l~D~~G~~~~~~~~~~~~~~ad~ii~v~D~t~~~s 95 (175)
T smart00177 23 AAGKTTILYKLKLGESVTTIPTIGFNVETVTYK-------NISFTVWDVGGQDKIRPLWRHYYTNTQGLIFVVDSNDRDR 95 (175)
T ss_pred CCCHHHHHHHHhcCCCCCcCCccccceEEEEEC-------CEEEEEEECCCChhhHHHHHHHhCCCCEEEEEEECCCHHH
Confidence 6899998766632 11 1111222222223332 6899999999999999999999999999999999985432
Q ss_pred hhH-HHHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 80 AQT-QVALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~-~~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
... ...+..+. ..++|+++|+||+|+..
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 128 (175)
T smart00177 96 IDEAREELHRMLNEDELRDAVILVFANKQDLPD 128 (175)
T ss_pred HHHHHHHHHHHhhCHhhcCCcEEEEEeCcCccc
Confidence 211 22222221 23689999999999864
No 179
>PF02421 FeoB_N: Ferrous iron transport protein B; InterPro: IPR011619 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent [].; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0016021 integral to membrane; PDB: 3TAH_B 3B1X_A 3SS8_A 3B1W_C 3B1V_A 3LX5_A 3B1Y_A 3LX8_A 3B1Z_A 3K53_B ....
Probab=99.40 E-value=2.2e-13 Score=100.09 Aligned_cols=99 Identities=19% Similarity=0.188 Sum_probs=73.0
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh------HHHHHHHH--HhcCEE
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF------SSEVSTAV--RLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~------~~~~~~~l--~~~d~~ 68 (161)
|+|||++++.+...+. +|.|++.....+.+. ..++.|+|+||...+ ...+..++ ...|++
T Consensus 10 NvGKStLfN~Ltg~~~~v~n~pG~Tv~~~~g~~~~~-------~~~~~lvDlPG~ysl~~~s~ee~v~~~~l~~~~~D~i 82 (156)
T PF02421_consen 10 NVGKSTLFNALTGAKQKVGNWPGTTVEKKEGIFKLG-------DQQVELVDLPGIYSLSSKSEEERVARDYLLSEKPDLI 82 (156)
T ss_dssp TSSHHHHHHHHHTTSEEEEESTTSSSEEEEEEEEET-------TEEEEEEE----SSSSSSSHHHHHHHHHHHHTSSSEE
T ss_pred CCCHHHHHHHHHCCCceecCCCCCCeeeeeEEEEec-------CceEEEEECCCcccCCCCCcHHHHHHHHHhhcCCCEE
Confidence 8999999988766553 699999877777776 679999999995332 23355555 468999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++|+|++. -.....+..++...++|+++|+||+|+....
T Consensus 83 i~VvDa~~--l~r~l~l~~ql~e~g~P~vvvlN~~D~a~~~ 121 (156)
T PF02421_consen 83 IVVVDATN--LERNLYLTLQLLELGIPVVVVLNKMDEAERK 121 (156)
T ss_dssp EEEEEGGG--HHHHHHHHHHHHHTTSSEEEEEETHHHHHHT
T ss_pred EEECCCCC--HHHHHHHHHHHHHcCCCEEEEEeCHHHHHHc
Confidence 99999985 2344556677778899999999999998654
No 180
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.39 E-value=8.1e-13 Score=97.95 Aligned_cols=99 Identities=17% Similarity=0.070 Sum_probs=66.8
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+.... ...-|+......+.+. ..++.+|||||++++...+..+++.+|++++|+|+++...
T Consensus 25 ~~GKTsl~~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~l~D~~G~~~~~~~~~~~~~~~d~vi~V~D~s~~~~ 97 (174)
T cd04153 25 NAGKTTILYQFLLGEVVHTSPTIGSNVEEIVYK-------NIRFLMWDIGGQESLRSSWNTYYTNTDAVILVIDSTDRER 97 (174)
T ss_pred CCCHHHHHHHHccCCCCCcCCccccceEEEEEC-------CeEEEEEECCCCHHHHHHHHHHhhcCCEEEEEEECCCHHH
Confidence 689999875553211 1122333333333333 6899999999999999999999999999999999986432
Q ss_pred hhH--HHHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 80 AQT--QVALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~--~~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
... ..+...+.. .++|+++++||+|+..
T Consensus 98 ~~~~~~~l~~~~~~~~~~~~p~viv~NK~Dl~~ 130 (174)
T cd04153 98 LPLTKEELYKMLAHEDLRKAVLLVLANKQDLKG 130 (174)
T ss_pred HHHHHHHHHHHHhchhhcCCCEEEEEECCCCCC
Confidence 211 122222221 3689999999999864
No 181
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.39 E-value=6.4e-13 Score=102.84 Aligned_cols=99 Identities=16% Similarity=0.064 Sum_probs=67.4
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++.++.... +..-|+........+. .+.+.||||||+++|......+++.+|++|+|+|+++..+
T Consensus 10 ~vGKTSLi~r~~~~~f~~~~~Tig~~~~~~~~~-------~~~l~iwDt~G~e~~~~l~~~~~~~ad~~IlV~Dvt~~~S 82 (220)
T cd04126 10 NVGKTSLLHRYMERRFKDTVSTVGGAFYLKQWG-------PYNISIWDTAGREQFHGLGSMYCRGAAAVILTYDVSNVQS 82 (220)
T ss_pred CCcHHHHHHHHhcCCCCCCCCccceEEEEEEee-------EEEEEEEeCCCcccchhhHHHHhccCCEEEEEEECCCHHH
Confidence 689999986664332 1112222222222222 6789999999999999999999999999999999986544
Q ss_pred hhHHH-HHHHHH---HcCCCcEEEEECCcchh
Q psy2609 80 AQTQV-ALKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~~-~~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
..... .|..+. ..++|+|+|+||+|+..
T Consensus 83 f~~l~~~~~~l~~~~~~~~piIlVgNK~DL~~ 114 (220)
T cd04126 83 LEELEDRFLGLTDTANEDCLFAVVGNKLDLTE 114 (220)
T ss_pred HHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 33322 222222 24689999999999965
No 182
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.39 E-value=7.3e-13 Score=104.17 Aligned_cols=100 Identities=16% Similarity=0.111 Sum_probs=67.3
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+. .+..+.+. +.....+.+. ++.+++.||||||+++|......++..+|++|+|+|+++
T Consensus 10 gvGKTSLi~r~~~~~f~~~y~pTi~-d~~~k~~~i~-----~~~~~l~I~Dt~G~~~~~~~~~~~~~~ad~iIlVfdv~~ 83 (247)
T cd04143 10 KVGKTAIVSRFLGGRFEEQYTPTIE-DFHRKLYSIR-----GEVYQLDILDTSGNHPFPAMRRLSILTGDVFILVFSLDN 83 (247)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCChh-HhEEEEEEEC-----CEEEEEEEEECCCChhhhHHHHHHhccCCEEEEEEeCCC
Confidence 589999986663 22222221 2222233333 456899999999999998888888999999999999986
Q ss_pred CCChhHHH-HHHHHH------------HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAW------------LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~------------~~~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++..+. ..++|+|+|+||+|+..
T Consensus 84 ~~Sf~~i~~~~~~I~~~k~~~~~~~~~~~~~piIivgNK~Dl~~ 127 (247)
T cd04143 84 RESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDF 127 (247)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccCCCCcEEEEEECccchh
Confidence 43322221 222221 13689999999999964
No 183
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.39 E-value=2.4e-13 Score=100.50 Aligned_cols=101 Identities=14% Similarity=0.017 Sum_probs=68.2
Q ss_pred ccccccccCCch------hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRK------DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~------~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||+++.++. .+..+.+........+.+. +..+.+.+|||+|++++......+++.+|++++|+|++
T Consensus 14 ~vGKTsli~~~~~~~f~~~~~~~T~~~~~~~~~~~~~-----~~~~~l~~~d~~g~~~~~~~~~~~~~~~d~~llv~d~~ 88 (169)
T cd01892 14 GSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVY-----GQEKYLILREVGEDEVAILLNDAELAACDVACLVYDSS 88 (169)
T ss_pred CCcHHHHHHHHhCCCCCcccCCCccCcceEEEEEEEC-----CeEEEEEEEecCCcccccccchhhhhcCCEEEEEEeCC
Confidence 589999875553 3333433332222334444 44678999999999999888899999999999999997
Q ss_pred CCCChhHH-HHHHHHH-HcCCCcEEEEECCcchh
Q psy2609 76 EGICAQTQ-VALKQAW-LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 76 ~~~~~~~~-~~~~~~~-~~~~p~ilv~NK~Dl~~ 107 (161)
+..+.... .++.... ..++|+++|+||+|+..
T Consensus 89 ~~~s~~~~~~~~~~~~~~~~~p~iiv~NK~Dl~~ 122 (169)
T cd01892 89 DPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDE 122 (169)
T ss_pred CHHHHHHHHHHHHHhccCCCCeEEEEEEcccccc
Confidence 64222211 2222221 23789999999999864
No 184
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.38 E-value=1.2e-12 Score=96.59 Aligned_cols=99 Identities=14% Similarity=0.063 Sum_probs=66.4
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+.... .+..|+......+.+. .+++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 9 ~~GKTsl~~~l~~~~~~~~~~T~~~~~~~~~~~-------~~~i~l~Dt~G~~~~~~~~~~~~~~ad~ii~V~D~s~~~s 81 (169)
T cd04158 9 GAGKTTILFKLKQDEFMQPIPTIGFNVETVEYK-------NLKFTIWDVGGKHKLRPLWKHYYLNTQAVVFVVDSSHRDR 81 (169)
T ss_pred CCCHHHHHHHHhcCCCCCcCCcCceeEEEEEEC-------CEEEEEEECCCChhcchHHHHHhccCCEEEEEEeCCcHHH
Confidence 689999976654321 1122332222333333 7899999999999999999999999999999999985422
Q ss_pred hhH-HHHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 80 AQT-QVALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~-~~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
... ...+..+. ..+.|+++|+||+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 114 (169)
T cd04158 82 VSEAHSELAKLLTEKELRDALLLIFANKQDVAG 114 (169)
T ss_pred HHHHHHHHHHHhcChhhCCCCEEEEEeCcCccc
Confidence 211 11222221 13589999999999864
No 185
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.38 E-value=1.4e-12 Score=94.75 Aligned_cols=101 Identities=19% Similarity=0.072 Sum_probs=67.6
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..+..........+.+. +...++.+|||||++++......+++.+|++++|+|+++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~v~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 85 (163)
T cd01860 11 SVGKSSLVLRFVKNEFSENQESTIGAAFLTQTVNLD-----DTTVKFEIWDTAGQERYRSLAPMYYRGAAAAIVVYDITS 85 (163)
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEeCCchHHHHHHHHHHhccCCEEEEEEECcC
Confidence 68999998544322 22222222222334444 447889999999999999999999999999999999985
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
..+... ..++..+.. .++|+++++||+|+..
T Consensus 86 ~~s~~~~~~~~~~~~~~~~~~~~iivv~nK~D~~~ 120 (163)
T cd01860 86 EESFEKAKSWVKELQRNASPNIIIALVGNKADLES 120 (163)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 432222 222222222 3588999999999874
No 186
>TIGR00450 mnmE_trmE_thdF tRNA modification GTPase TrmE. TrmE, also called MnmE and previously designated ThdF (thiophene and furan oxidation protein), is a GTPase involved in tRNA modification to create 5-methylaminomethyl-2-thiouridine in the wobble position of some tRNAs. This protein and GidA form an alpha2/beta2 heterotetramer.
Probab=99.37 E-value=1.5e-12 Score=110.16 Aligned_cols=98 Identities=24% Similarity=0.238 Sum_probs=73.1
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH--------HHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS--------EVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~--------~~~~~l~~~d~ 67 (161)
|+|||++++.+..+ ..+|.|.+.....+.+. ++.+.+|||||+.++.. .+..+++.+|+
T Consensus 213 nvGKSSLiN~L~~~~~aivs~~pgtTrd~~~~~i~~~-------g~~v~l~DTaG~~~~~~~ie~~gi~~~~~~~~~aD~ 285 (442)
T TIGR00450 213 NVGKSSLLNALLKQDRAIVSDIKGTTRDVVEGDFELN-------GILIKLLDTAGIREHADFVERLGIEKSFKAIKQADL 285 (442)
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCcEEEEEEEEEEEC-------CEEEEEeeCCCcccchhHHHHHHHHHHHHHHhhCCE
Confidence 79999998877543 24577777665566665 67899999999865432 24578899999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+++|+|++.+.+.... ++..+...++|+++|+||+|+..
T Consensus 286 il~V~D~s~~~s~~~~-~l~~~~~~~~piIlV~NK~Dl~~ 324 (442)
T TIGR00450 286 VIYVLDASQPLTKDDF-LIIDLNKSKKPFILVLNKIDLKI 324 (442)
T ss_pred EEEEEECCCCCChhHH-HHHHHhhCCCCEEEEEECccCCC
Confidence 9999999876655444 44445456899999999999864
No 187
>KOG0394|consensus
Probab=99.36 E-value=1.9e-13 Score=101.72 Aligned_cols=102 Identities=19% Similarity=0.089 Sum_probs=73.2
Q ss_pred cccccccCCch---hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 3 CMVSSYMDSRK---DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 3 ~g~~~~~D~~~---~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
.||+.+++.+. -++....||.....+..+..+ ++.+.++||||+|+|||.++-...|++||++++|+|....-+
T Consensus 20 VGKtSLmn~yv~~kF~~qykaTIgadFltKev~Vd---~~~vtlQiWDTAGQERFqsLg~aFYRgaDcCvlvydv~~~~S 96 (210)
T KOG0394|consen 20 VGKTSLMNQYVNKKFSQQYKATIGADFLTKEVQVD---DRSVTLQIWDTAGQERFQSLGVAFYRGADCCVLVYDVNNPKS 96 (210)
T ss_pred ccHHHHHHHHHHHHHHHHhccccchhheeeEEEEc---CeEEEEEEEecccHHHhhhcccceecCCceEEEEeecCChhh
Confidence 36777765442 334455566655555555443 678899999999999999999999999999999999985444
Q ss_pred hhHHHHH-----HHHH---HcCCCcEEEEECCcchh
Q psy2609 80 AQTQVAL-----KQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~~~~-----~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
......| .+.. ....|.||++||+|+..
T Consensus 97 fe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~ 132 (210)
T KOG0394|consen 97 FENLENWRKEFLIQASPQDPETFPFVILGNKIDVDG 132 (210)
T ss_pred hccHHHHHHHHHHhcCCCCCCcccEEEEcccccCCC
Confidence 4443333 3322 13678999999999965
No 188
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.36 E-value=1.5e-12 Score=95.15 Aligned_cols=101 Identities=19% Similarity=0.178 Sum_probs=65.5
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-hHHHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-FSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||+++..+- .+..+... ......+.+. ++.+++.+|||||+++ +......+++.+|++++|+|++
T Consensus 9 ~~GKtsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~ 82 (165)
T cd04146 9 GVGKSALVVRFLTKRFIGEYDPNLE-SLYSRQVTID-----GEQVSLEILDTAGQQQADTEQLERSIRWADGFVLVYSIT 82 (165)
T ss_pred CCcHHHHHHHHHhCccccccCCChH-HhceEEEEEC-----CEEEEEEEEECCCCcccccchHHHHHHhCCEEEEEEECC
Confidence 589999985542 23333221 1111223333 4467899999999985 3556778899999999999998
Q ss_pred CCCChhHHHHH-HHHH-----HcCCCcEEEEECCcchhh
Q psy2609 76 EGICAQTQVAL-KQAW-----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 76 ~~~~~~~~~~~-~~~~-----~~~~p~ilv~NK~Dl~~~ 108 (161)
+..+......| ..+. ..++|+++|+||+|+...
T Consensus 83 ~~~s~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 121 (165)
T cd04146 83 DRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHY 121 (165)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCchHHh
Confidence 65443322222 2222 237999999999998643
No 189
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=99.36 E-value=1.2e-12 Score=110.86 Aligned_cols=97 Identities=23% Similarity=0.234 Sum_probs=72.9
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH--------HHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS--------EVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~--------~~~~~l~~~d~ 67 (161)
|||||++++.+..+ ..+|.|.+.....+.+. +..+.+|||||++++.. .+..+++.+|+
T Consensus 225 nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-------g~~i~l~DT~G~~~~~~~ie~~gi~~~~~~~~~aD~ 297 (449)
T PRK05291 225 NVGKSSLLNALLGEERAIVTDIAGTTRDVIEEHINLD-------GIPLRLIDTAGIRETDDEVEKIGIERSREAIEEADL 297 (449)
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCcccccEEEEEEEC-------CeEEEEEeCCCCCCCccHHHHHHHHHHHHHHHhCCE
Confidence 79999998877543 24677777666666665 67899999999875432 24567889999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+++|+|++.+........+.. ..++|+++|+||+|+..
T Consensus 298 il~VvD~s~~~s~~~~~~l~~--~~~~piiiV~NK~DL~~ 335 (449)
T PRK05291 298 VLLVLDASEPLTEEDDEILEE--LKDKPVIVVLNKADLTG 335 (449)
T ss_pred EEEEecCCCCCChhHHHHHHh--cCCCCcEEEEEhhhccc
Confidence 999999987766555444443 45789999999999964
No 190
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=99.35 E-value=3.7e-12 Score=97.22 Aligned_cols=105 Identities=15% Similarity=0.205 Sum_probs=66.6
Q ss_pred ccccccccCCchhHHHcC-C-ccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhc-CEEEEEEeCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERG-I-TMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC-DGTIIVVDCVEGI 78 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~g-i-ti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~-d~~ilVvd~~~~~ 78 (161)
.+|||.++..+....-.. . ++......+.... ......+.+||||||.++......+++.+ +++|+|+|+....
T Consensus 10 ~sGKTsL~~~l~~~~~~~t~~s~~~~~~~~~~~~---~~~~~~~~l~D~pG~~~~~~~~~~~~~~~~~~vV~VvD~~~~~ 86 (203)
T cd04105 10 DSGKTALFTKLTTGKYRSTVTSIEPNVATFILNS---EGKGKKFRLVDVPGHPKLRDKLLETLKNSAKGIVFVVDSATFQ 86 (203)
T ss_pred CCCHHHHHHHHhcCCCCCccCcEeecceEEEeec---CCCCceEEEEECCCCHHHHHHHHHHHhccCCEEEEEEECccch
Confidence 589999886664432111 1 1111111111110 12356899999999999999999999999 9999999998652
Q ss_pred Ch--hHHHHHHHH------HHcCCCcEEEEECCcchhhh
Q psy2609 79 CA--QTQVALKQA------WLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 79 ~~--~~~~~~~~~------~~~~~p~ilv~NK~Dl~~~~ 109 (161)
.. .....+..+ ...++|+++|+||+|+....
T Consensus 87 ~~~~~~~~~l~~il~~~~~~~~~~pvliv~NK~Dl~~a~ 125 (203)
T cd04105 87 KNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAK 125 (203)
T ss_pred hHHHHHHHHHHHHHHHHhhccCCCCEEEEecchhhcccC
Confidence 11 111122111 12489999999999997643
No 191
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.35 E-value=1.3e-12 Score=96.02 Aligned_cols=102 Identities=14% Similarity=0.067 Sum_probs=67.5
Q ss_pred CccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 1 MLCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 1 ~~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+||||+++..+.... .+.+. ......+.+. +..+.+.+|||||+++|...+..+++.++++++|+|.+
T Consensus 10 ~~~GKTsli~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~vlv~~~~ 83 (168)
T cd04177 10 GGVGKSALTVQFVQNVFIESYDPTIE-DSYRKQVEID-----GRQCDLEILDTAGTEQFTAMRELYIKSGQGFLLVYSVT 83 (168)
T ss_pred CCCCHHHHHHHHHhCCCCcccCCcch-heEEEEEEEC-----CEEEEEEEEeCCCcccchhhhHHHHhhCCEEEEEEECC
Confidence 3789999976654222 22111 1111222233 44678999999999999999999999999999999998
Q ss_pred CCCChhHH-----HHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 76 EGICAQTQ-----VALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 76 ~~~~~~~~-----~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+..+.... .+.+.....++|+++++||+|+...
T Consensus 84 ~~~s~~~~~~~~~~i~~~~~~~~~piiiv~nK~D~~~~ 121 (168)
T cd04177 84 SEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDD 121 (168)
T ss_pred CHHHHHHHHHHHHHHHHhhCCCCCCEEEEEEChhcccc
Confidence 54322222 1222122347999999999998643
No 192
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.35 E-value=5.7e-12 Score=93.87 Aligned_cols=97 Identities=18% Similarity=0.217 Sum_probs=68.1
Q ss_pred ccccccccCCchhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCc----------hhhHHHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH----------VDFSSEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~----------~~~~~~~~~~l~~ 64 (161)
++|||++++.+.... .+|.|.... .|.. +..+.+|||||+ +.+......+++.
T Consensus 28 ~~GKStlin~l~~~~~~~~~~~~~~~t~~~~----~~~~------~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~l~~ 97 (179)
T TIGR03598 28 NVGKSSLINALTNRKKLARTSKTPGRTQLIN----FFEV------NDGFRLVDLPGYGYAKVSKEEKEKWQKLIEEYLEK 97 (179)
T ss_pred CCCHHHHHHHHhCCCCcccccCCCCcceEEE----EEEe------CCcEEEEeCCCCccccCChhHHHHHHHHHHHHHHh
Confidence 689999988765432 122332211 1211 126999999995 2355555566664
Q ss_pred ---cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 65 ---CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 65 ---~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++++++|+|++.+....+..+++.+...++|+++|+||+|+...
T Consensus 98 ~~~~~~ii~vvd~~~~~~~~~~~~~~~~~~~~~pviiv~nK~D~~~~ 144 (179)
T TIGR03598 98 RENLKGVVLLMDIRHPLKELDLEMLEWLRERGIPVLIVLTKADKLKK 144 (179)
T ss_pred ChhhcEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCCH
Confidence 57999999999888888887778777789999999999999743
No 193
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.35 E-value=1.6e-12 Score=94.22 Aligned_cols=100 Identities=16% Similarity=0.076 Sum_probs=66.3
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.. ...+.+. +.......+. +..+.+.+|||||++++...+..+++.+|++++|+|...
T Consensus 10 ~~GKTsl~~~l~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (164)
T cd04139 10 GVGKSALTLQFMYDEFVEDYEPTKA-DSYRKKVVLD-----GEDVQLNILDTAGQEDYAAIRDNYHRSGEGFLLVFSITD 83 (164)
T ss_pred CCCHHHHHHHHHhCCCccccCCcch-hhEEEEEEEC-----CEEEEEEEEECCChhhhhHHHHHHhhcCCEEEEEEECCC
Confidence 6899998765532 2222221 1111222222 446789999999999999999999999999999999875
Q ss_pred CCChhH-HHHHH-HHH---HcCCCcEEEEECCcchh
Q psy2609 77 GICAQT-QVALK-QAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~-~~~~~-~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
..+... ...+. ... ..++|+++|+||+|+..
T Consensus 84 ~~s~~~~~~~~~~~~~~~~~~~~piiiv~NK~D~~~ 119 (164)
T cd04139 84 MESFTATAEFREQILRVKDDDNVPLLLVGNKCDLED 119 (164)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEcccccc
Confidence 322111 11212 122 25799999999999965
No 194
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=1.7e-12 Score=99.58 Aligned_cols=102 Identities=19% Similarity=0.101 Sum_probs=67.2
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+... ..++++.+.....+.+. .+..+++.+|||||++++......+++.+|++++|+|.++
T Consensus 12 ~vGKTsLi~~l~~~~~~~~~~~ti~~d~~~~~i~~~----~~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 87 (211)
T cd04111 12 TVGKSSLLKRFTEGRFAEVSDPTVGVDFFSRLIEIE----PGVRIKLQLWDTAGQERFRSITRSYYRNSVGVLLVFDITN 87 (211)
T ss_pred CCCHHHHHHHHHcCCCCCCCCceeceEEEEEEEEEC----CCCEEEEEEEeCCcchhHHHHHHHHhcCCcEEEEEEECCC
Confidence 68999998665432 22333333222223222 1446789999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHH----HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++..+. ....|+++++||+|+..
T Consensus 88 ~~Sf~~l~~~~~~i~~~~~~~~~~iilvgNK~Dl~~ 123 (211)
T cd04111 88 RESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLES 123 (211)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCeEEEEEEcccccc
Confidence 43322211 222221 13467789999999865
No 195
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=99.35 E-value=2.7e-12 Score=92.03 Aligned_cols=99 Identities=22% Similarity=0.190 Sum_probs=69.2
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH--------HHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS--------EVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~--------~~~~~l~~~d~ 67 (161)
+|||+++++.+.... .++.+.+.....+.+. ..++.+|||||+.++.. .....+..+|+
T Consensus 11 ~~GKstli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (157)
T cd04164 11 NVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIG-------GIPVRLIDTAGIRETEDEIEKIGIERAREAIEEADL 83 (157)
T ss_pred CCCHHHHHHHHHCCceEeccCCCCCccceEEEEEEeC-------CEEEEEEECCCcCCCcchHHHHHHHHHHHHHhhCCE
Confidence 689999986664322 3455555444444443 57899999999865432 34567788999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+++|+|++..........+.. ..+.|+++|+||+|+....
T Consensus 84 ~v~v~d~~~~~~~~~~~~~~~--~~~~~vi~v~nK~D~~~~~ 123 (157)
T cd04164 84 VLFVIDASRGLDEEDLEILEL--PADKPIIVVLNKSDLLPDS 123 (157)
T ss_pred EEEEEECCCCCCHHHHHHHHh--hcCCCEEEEEEchhcCCcc
Confidence 999999997655555444433 4679999999999997543
No 196
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.35 E-value=3.4e-12 Score=91.16 Aligned_cols=100 Identities=23% Similarity=0.168 Sum_probs=68.6
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..+..+.......+... +....+.+|||||++++......+++.+|++++|+|+.+
T Consensus 10 ~~GKStl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 84 (159)
T cd00154 10 GVGKTSLLLRFVDGKFDENYKSTIGVDFKSKTIEID-----GKTVKLQIWDTAGQERFRSITPSYYRGAHGAILVYDITN 84 (159)
T ss_pred CCCHHHHHHHHHhCcCCCccCCceeeeeEEEEEEEC-----CEEEEEEEEecCChHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 589999986553 2223333333333333333 336789999999999999999999999999999999986
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcch
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRL 106 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~ 106 (161)
...... ..+...... .++|+++++||+|+.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~ 118 (159)
T cd00154 85 RESFENLDKWLKELKEYAPENIPIILVGNKIDLE 118 (159)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEEccccc
Confidence 332222 222233333 358999999999996
No 197
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.34 E-value=1.1e-12 Score=96.51 Aligned_cols=100 Identities=13% Similarity=0.004 Sum_probs=67.1
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+.. .....+... +..+.+.+|||||++++......+++.+|++|+|+|.++
T Consensus 8 ~vGKTsli~~~~~~~~~~~~~~~~~~-~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 81 (174)
T smart00174 8 AVGKTCLLISYTTNAFPEDYVPTVFE-NYSADVEVD-----GKPVELGLWDTAGQEDYDRLRPLSYPDTDVFLICFSVDS 81 (174)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcEEe-eeeEEEEEC-----CEEEEEEEEECCCCcccchhchhhcCCCCEEEEEEECCC
Confidence 589999986654322 222111 111122222 446789999999999999888899999999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
.-+.... .+...+.. .++|+++|+||+|+..
T Consensus 82 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 116 (174)
T smart00174 82 PASFENVKEKWYPEVKHFCPNTPIILVGTKLDLRE 116 (174)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEecChhhhh
Confidence 4333222 12222222 3799999999999965
No 198
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.34 E-value=3e-12 Score=97.39 Aligned_cols=102 Identities=14% Similarity=0.043 Sum_probs=65.6
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh--------HHHHHHHHHhcCEE
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF--------SSEVSTAVRLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~--------~~~~~~~l~~~d~~ 68 (161)
++|||+++..+ ..+..++++.+.....+.+. +..+.+.||||||++++ ......+++.+|++
T Consensus 10 ~vGKTsLi~~~~~~~f~~~~~pt~~~~~~~~~i~~~-----~~~~~l~i~Dt~G~~~~~~~~~~e~~~~~~~~~~~ad~i 84 (198)
T cd04142 10 GVGKTAIVRQFLAQEFPEEYIPTEHRRLYRPAVVLS-----GRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGLRNSRAF 84 (198)
T ss_pred CCcHHHHHHHHHcCCCCcccCCccccccceeEEEEC-----CEEEEEEEEeCCCcccCCccchhHHHHHHHhhhccCCEE
Confidence 68999987544 34444444433322334444 44688999999997653 22245568899999
Q ss_pred EEEEeCCCCCChhHHHHH-HHHH------HcCCCcEEEEECCcchhh
Q psy2609 69 IIVVDCVEGICAQTQVAL-KQAW------LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~-~~~~------~~~~p~ilv~NK~Dl~~~ 108 (161)
|+|+|+++..+......| ..+. ..++|+++|+||+|+...
T Consensus 85 ilv~D~~~~~S~~~~~~~~~~i~~~~~~~~~~~piiivgNK~Dl~~~ 131 (198)
T cd04142 85 ILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRH 131 (198)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHhcccCCCCCCEEEEEECcccccc
Confidence 999999865433322222 2221 246899999999999653
No 199
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.34 E-value=3.4e-12 Score=93.39 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=68.2
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++.++ .++..+++..+.....+... +..+++.+|||||++++......+++.+|++++|+|.++
T Consensus 10 ~~GKTsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (161)
T cd04117 10 GVGKTCLLCRFTDNEFHSSHISTIGVDFKMKTIEVD-----GIKVRIQIWDTAGQERYQTITKQYYRRAQGIFLVYDISS 84 (161)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-----CEEEEEEEEeCCCcHhHHhhHHHHhcCCcEEEEEEECCC
Confidence 58999887443 33333444433322333333 446789999999999999999999999999999999986
Q ss_pred CCChhHHHH-HHHHH---HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVA-LKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~-~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
.-+...... +..+. ..++|+++|+||+|+..
T Consensus 85 ~~sf~~~~~~~~~~~~~~~~~~~iilvgnK~Dl~~ 119 (161)
T cd04117 85 ERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQ 119 (161)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 433222221 12111 13689999999999864
No 200
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.34 E-value=2.4e-12 Score=96.41 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=64.5
Q ss_pred ccccccccCCchhH----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDE----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+... ..+ |+......+.+ ..+.+.+|||||++++...+..+++.+|++|+|+|+++.
T Consensus 27 ~vGKTsli~~~~~~~~~~~~~--T~~~~~~~~~~-------~~~~~~l~D~~G~~~~~~~~~~~~~~ad~iI~v~D~t~~ 97 (182)
T PTZ00133 27 AAGKTTILYKLKLGEVVTTIP--TIGFNVETVEY-------KNLKFTMWDVGGQDKLRPLWRHYYQNTNGLIFVVDSNDR 97 (182)
T ss_pred CCCHHHHHHHHhcCCccccCC--ccccceEEEEE-------CCEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCH
Confidence 58999887555321 122 22222222222 378999999999999999999999999999999999853
Q ss_pred CChhH-H-HHHHHHH---HcCCCcEEEEECCcchh
Q psy2609 78 ICAQT-Q-VALKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~-~~~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
.+... . .+...+. ..++|+++|+||+|+..
T Consensus 98 ~s~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~ 132 (182)
T PTZ00133 98 ERIGDAREELERMLSEDELRDAVLLVFANKQDLPN 132 (182)
T ss_pred HHHHHHHHHHHHHHhCHhhcCCCEEEEEeCCCCCC
Confidence 22111 1 1222221 13689999999999864
No 201
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.34 E-value=1.7e-12 Score=97.02 Aligned_cols=99 Identities=19% Similarity=0.148 Sum_probs=67.1
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+.... ....|+......+.+. +..+.+|||||++++...+..+++.+|++++|+|+++.-+
T Consensus 29 ~~GKStLi~~l~~~~~~~~~~T~~~~~~~i~~~-------~~~~~l~D~~G~~~~~~~~~~~~~~ad~iilV~D~~~~~s 101 (190)
T cd00879 29 NAGKTTLLHMLKDDRLAQHVPTLHPTSEELTIG-------NIKFKTFDLGGHEQARRLWKDYFPEVDGIVFLVDAADPER 101 (190)
T ss_pred CCCHHHHHHHHhcCCCcccCCccCcceEEEEEC-------CEEEEEEECCCCHHHHHHHHHHhccCCEEEEEEECCcHHH
Confidence 689999986654321 1112333333444444 6789999999999999889999999999999999985422
Q ss_pred hh-HHHHH-HHH---HHcCCCcEEEEECCcchh
Q psy2609 80 AQ-TQVAL-KQA---WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~-~~~~~-~~~---~~~~~p~ilv~NK~Dl~~ 107 (161)
.. ....+ ... ...+.|+++++||+|+..
T Consensus 102 ~~~~~~~~~~i~~~~~~~~~pvivv~NK~Dl~~ 134 (190)
T cd00879 102 FQESKEELDSLLSDEELANVPFLILGNKIDLPG 134 (190)
T ss_pred HHHHHHHHHHHHcCccccCCCEEEEEeCCCCCC
Confidence 11 11122 211 124699999999999864
No 202
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.33 E-value=3.6e-12 Score=92.40 Aligned_cols=100 Identities=15% Similarity=0.062 Sum_probs=65.9
Q ss_pred ccccccccCCchhHHH--cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE--RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~--~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+..... ..-|+......+.+ ...+.+.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 9 ~~GKTsl~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~l~i~D~~G~~~~~~~~~~~~~~~~~iv~v~D~~~~~~ 82 (160)
T cd04156 9 SAGKSTLLYKLKHAELVTTIPTVGFNVEMLQL------EKHLSLTVWDVGGQEKMRTVWKCYLENTDGLVYVVDSSDEAR 82 (160)
T ss_pred CCCHHHHHHHHhcCCcccccCccCcceEEEEe------CCceEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCcHHH
Confidence 6899999876643321 11122211122222 235789999999999999999999999999999999986432
Q ss_pred hhH--HHHHHHHH---HcCCCcEEEEECCcchh
Q psy2609 80 AQT--QVALKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~--~~~~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
... ..+...+. ..++|+++|+||+|+..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 115 (160)
T cd04156 83 LDESQKELKHILKNEHIKGVPVVLLANKQDLPG 115 (160)
T ss_pred HHHHHHHHHHHHhchhhcCCCEEEEEECccccc
Confidence 111 11112211 25799999999999853
No 203
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.33 E-value=4.3e-12 Score=91.57 Aligned_cols=101 Identities=18% Similarity=0.103 Sum_probs=67.3
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+-. ...+.++.......+.+. +....+.+|||||++++......+++.+|++++|+|+++
T Consensus 10 ~~GKStli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (162)
T cd04123 10 RVGKTSLVLRYVENKFNEKHESTTQASFFQKTVNIG-----GKRIDLAIWDTAGQERYHALGPIYYRDADGAILVYDITD 84 (162)
T ss_pred CCCHHHHHHHHHhCCCCCCcCCccceeEEEEEEEEC-----CEEEEEEEEECCchHHHHHhhHHHhccCCEEEEEEECCC
Confidence 6899999865432 222222222222223333 345789999999999999999999999999999999986
Q ss_pred CCChhHHHHH-HHHH---HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
+........| ..+. ..++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~i~~~~~~~~piiiv~nK~D~~~ 119 (162)
T cd04123 85 ADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLER 119 (162)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 5432222222 1111 23689999999999874
No 204
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.33 E-value=1.5e-12 Score=97.82 Aligned_cols=101 Identities=14% Similarity=0.066 Sum_probs=67.7
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.. +..+.+..... ..+... +..+.+.||||||+++|......+++.+|++++|+|.++
T Consensus 10 ~vGKTsli~~~~~~~~~~~~~~t~~~~~~-~~i~~~-----~~~~~l~i~Dt~G~~~~~~l~~~~~~~a~~~ilv~dv~~ 83 (189)
T cd04134 10 ACGKTSLLNVFTRGYFPQVYEPTVFENYV-HDIFVD-----GLHIELSLWDTAGQEEFDRLRSLSYADTDVIMLCFSVDS 83 (189)
T ss_pred CCCHHHHHHHHhcCCCCCccCCcceeeeE-EEEEEC-----CEEEEEEEEECCCChhccccccccccCCCEEEEEEECCC
Confidence 5899999865543 22333222111 112222 446789999999999998888889999999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+.. .++|+++|+||+|+...
T Consensus 84 ~~sf~~~~~~~~~~i~~~~~~~piilvgNK~Dl~~~ 119 (189)
T cd04134 84 PDSLENVESKWLGEIREHCPGVKLVLVALKCDLREA 119 (189)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 5443332 12223322 37899999999999653
No 205
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.33 E-value=2.9e-12 Score=105.47 Aligned_cols=99 Identities=24% Similarity=0.202 Sum_probs=69.3
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCc---------hhhHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH---------VDFSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~---------~~~~~~~~~~l~~~d~ 67 (161)
|||||++++.+..+. .++.|++.....+.+.. +.++.||||||+ +.|.. +...+..||+
T Consensus 199 NvGKSSLln~L~~~~~~v~~~~~tT~d~~~~~i~~~~------~~~i~l~DT~G~~~~l~~~lie~f~~-tle~~~~ADl 271 (351)
T TIGR03156 199 NAGKSTLFNALTGADVYAADQLFATLDPTTRRLDLPD------GGEVLLTDTVGFIRDLPHELVAAFRA-TLEEVREADL 271 (351)
T ss_pred CCCHHHHHHHHhCCceeeccCCccccCCEEEEEEeCC------CceEEEEecCcccccCCHHHHHHHHH-HHHHHHhCCE
Confidence 899999998876542 35777777666665531 458999999998 22332 4456889999
Q ss_pred EEEEEeCCCCCChhHH----HHHHHHHHcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQ----VALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~----~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+++|+|++++...... .++..+...++|+++|+||+|+..
T Consensus 272 il~VvD~s~~~~~~~~~~~~~~L~~l~~~~~piIlV~NK~Dl~~ 315 (351)
T TIGR03156 272 LLHVVDASDPDREEQIEAVEKVLEELGAEDIPQLLVYNKIDLLD 315 (351)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHhccCCCCEEEEEEeecCCC
Confidence 9999999866543332 222222234789999999999864
No 206
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.33 E-value=1e-12 Score=96.31 Aligned_cols=102 Identities=21% Similarity=0.151 Sum_probs=65.0
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
+||||++++.+..+. .++.|+......+.+. ...++.+|||||+.+ +......+++.+|+++
T Consensus 6 ~~GKStll~~l~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~i~DtpG~~~~~~~~~~~~~~~~~~~~~~d~ii 79 (176)
T cd01881 6 NVGKSTLLNALTNAKPKVANYPFTTLEPNLGVVEVP------DGARIQVADIPGLIEGASEGRGLGNQFLAHIRRADAIL 79 (176)
T ss_pred CCcHHHHHHHHhcCCccccCCCceeecCcceEEEcC------CCCeEEEEeccccchhhhcCCCccHHHHHHHhccCEEE
Confidence 689999998775543 2344554443333332 156899999999733 2234456788899999
Q ss_pred EEEeCCCCC------ChhHHH-HHHHHH----------HcCCCcEEEEECCcchhhh
Q psy2609 70 IVVDCVEGI------CAQTQV-ALKQAW----------LEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 70 lVvd~~~~~------~~~~~~-~~~~~~----------~~~~p~ilv~NK~Dl~~~~ 109 (161)
+|+|+.... ...... +...+. ..++|+++|+||+|+....
T Consensus 80 ~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ivv~NK~Dl~~~~ 136 (176)
T cd01881 80 HVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAE 136 (176)
T ss_pred EEEeccCCccccccCHHHHHHHHHHHHHHhhhhhHHHHHhhCCeEEEEEchhcCchh
Confidence 999998652 111111 111111 1478999999999997543
No 207
>PRK04213 GTP-binding protein; Provisional
Probab=99.33 E-value=6.7e-12 Score=94.79 Aligned_cols=95 Identities=20% Similarity=0.211 Sum_probs=63.5
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCC-----------chhhHHHHHHHHH--
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPG-----------HVDFSSEVSTAVR-- 63 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG-----------~~~~~~~~~~~l~-- 63 (161)
++|||++++.+.. +..+|+|+... .+.+. .+.+||||| .+++...+..++.
T Consensus 19 ~~GKSsLin~l~~~~~~~~~~~~~t~~~~--~~~~~---------~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (201)
T PRK04213 19 NVGKSTLVRELTGKKVRVGKRPGVTRKPN--HYDWG---------DFILTDLPGFGFMSGVPKEVQEKIKDEIVRYIEDN 87 (201)
T ss_pred CCCHHHHHHHHhCCCCccCCCCceeeCce--EEeec---------ceEEEeCCccccccccCHHHHHHHHHHHHHHHHhh
Confidence 7899999866643 23455555422 12111 689999999 4566666666654
Q ss_pred --hcCEEEEEEeCCCCC-----------ChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 64 --LCDGTIIVVDCVEGI-----------CAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 64 --~~d~~ilVvd~~~~~-----------~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
.++++++|+|+.... ...+..++..+...++|+++|+||+|+..
T Consensus 88 ~~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~ 144 (201)
T PRK04213 88 ADRILAAVLVVDGKSFIEIIERWEGRGEIPIDVEMFDFLRELGIPPIVAVNKMDKIK 144 (201)
T ss_pred hhhheEEEEEEeCccccccccccccCCCcHHHHHHHHHHHHcCCCeEEEEECccccC
Confidence 457899999986421 12334555666667899999999999864
No 208
>TIGR00437 feoB ferrous iron transporter FeoB. FeoB (773 amino acids in E. coli), a cytoplasmic membrane protein required for iron(II) update, is encoded in an operon with FeoA (75 amino acids), which is also required, and is regulated by Fur. There appear to be two copies in Archaeoglobus fulgidus and Clostridium acetobutylicum.
Probab=99.32 E-value=9.6e-13 Score=114.81 Aligned_cols=98 Identities=19% Similarity=0.115 Sum_probs=70.5
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHH------HHHHHH--hcCEE
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE------VSTAVR--LCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~------~~~~l~--~~d~~ 68 (161)
|+|||++++.+..+ ..+|+|++.....+.++ +.++++|||||+.++... ...++. .+|++
T Consensus 4 NvGKSSL~N~Ltg~~~~v~n~pG~Tv~~~~~~i~~~-------~~~i~lvDtPG~~~~~~~s~~e~v~~~~l~~~~aDvv 76 (591)
T TIGR00437 4 NVGKSTLFNALTGANQTVGNWPGVTVEKKEGKLGFQ-------GEDIEIVDLPGIYSLTTFSLEEEVARDYLLNEKPDLV 76 (591)
T ss_pred CCCHHHHHHHHhCCCCeecCCCCeEEEEEEEEEEEC-------CeEEEEEECCCccccCccchHHHHHHHHHhhcCCCEE
Confidence 79999998777543 34678887766666665 567999999999876432 333443 68999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++|+|++.. . .......++...++|+++|+||+|+.+.
T Consensus 77 I~VvDat~l-e-r~l~l~~ql~~~~~PiIIVlNK~Dl~~~ 114 (591)
T TIGR00437 77 VNVVDASNL-E-RNLYLTLQLLELGIPMILALNLVDEAEK 114 (591)
T ss_pred EEEecCCcc-h-hhHHHHHHHHhcCCCEEEEEehhHHHHh
Confidence 999999852 2 2233334455678999999999998653
No 209
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.32 E-value=4.8e-12 Score=94.74 Aligned_cols=101 Identities=17% Similarity=0.179 Sum_probs=68.2
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+... ..+.++.+.....+... ++.+.+.+|||||++++...+...++.+|++++|+|+++
T Consensus 10 ~vGKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~g~~~~~~~~~~~~~~~d~iilv~d~~~ 84 (188)
T cd04125 10 GVGKSSLLKRFTEDEFSESTKSTIGVDFKIKTVYIE-----NKIIKLQIWDTNGQERFRSLNNSYYRGAHGYLLVYDVTD 84 (188)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCceeeEEEEEEEEEC-----CEEEEEEEEECCCcHHHHhhHHHHccCCCEEEEEEECcC
Confidence 58999998655432 22333332222333333 446789999999999999999999999999999999986
Q ss_pred CCChhHHHH-HHHHH---HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVA-LKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~-~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
.-+...... +..+. ..++|+++|+||+|+..
T Consensus 85 ~~s~~~i~~~~~~i~~~~~~~~~~ivv~nK~Dl~~ 119 (188)
T cd04125 85 QESFENLKFWINEINRYARENVIKVIVANKSDLVN 119 (188)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCCCcc
Confidence 433222211 12222 23578999999999874
No 210
>PLN00023 GTP-binding protein; Provisional
Probab=99.32 E-value=4.2e-12 Score=103.08 Aligned_cols=107 Identities=17% Similarity=0.116 Sum_probs=69.8
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCC--------CCCCceeEEEEeCCCchhhHHHHHHHHHhcCEE
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNK--------DTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~--------~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ 68 (161)
.+|||+++..+.. +..+.+........+.+.... ..++.+.+.||||+|+++|...+..+++.+|++
T Consensus 31 GVGKTSLI~rf~~g~F~~~~~pTIG~d~~ik~I~~~~~~~~~~~ik~d~~k~v~LqIWDTAGqErfrsL~~~yyr~Adgi 110 (334)
T PLN00023 31 GVGKSSLVHLIVKGSSIARPPQTIGCTVGVKHITYGSPGSSSNSIKGDSERDFFVELWDVSGHERYKDCRSLFYSQINGV 110 (334)
T ss_pred CCcHHHHHHHHhcCCcccccCCceeeeEEEEEEEECCcccccccccccCCceEEEEEEECCCChhhhhhhHHhccCCCEE
Confidence 4789998755543 233344333222333443100 113468899999999999999999999999999
Q ss_pred EEEEeCCCCCChhHHH-HHHHHHH---------------cCCCcEEEEECCcchhh
Q psy2609 69 IIVVDCVEGICAQTQV-ALKQAWL---------------EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~-~~~~~~~---------------~~~p~ilv~NK~Dl~~~ 108 (161)
|+|+|.+..-+..... ++..+.. .++|++||+||+||...
T Consensus 111 ILVyDITdr~SFenL~kWl~eI~~~~~~s~p~~s~~~~~~~ipIILVGNK~DL~~~ 166 (334)
T PLN00023 111 IFVHDLSQRRTKTSLQKWASEVAATGTFSAPLGSGGPGGLPVPYIVIGNKADIAPK 166 (334)
T ss_pred EEEEeCCCHHHHHHHHHHHHHHHHhcccccccccccccCCCCcEEEEEECcccccc
Confidence 9999998643332222 2222222 14789999999999643
No 211
>TIGR02528 EutP ethanolamine utilization protein, EutP. This protein is found within operons which code for polyhedral organelles containing the enzyme ethanolamine ammonia lyase. The function of this gene is unknown, although the presence of an N-terminal GxxGxGK motif implies a GTP-binding site.
Probab=99.31 E-value=5.8e-13 Score=95.09 Aligned_cols=89 Identities=16% Similarity=0.086 Sum_probs=59.2
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCch----hhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV----DFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~----~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+..+... ......+.|. -.+|||||+. .+......+++.+|++++|+|++++
T Consensus 10 ~vGKSsL~~~l~~~~~~----~~~t~~~~~~----------~~~iDt~G~~~~~~~~~~~~~~~~~~ad~vilv~d~~~~ 75 (142)
T TIGR02528 10 GCGKTTLTQALQGEEIL----YKKTQAVEYN----------DGAIDTPGEYVENRRLYSALIVTAADADVIALVQSATDP 75 (142)
T ss_pred CCCHHHHHHHHcCCccc----cccceeEEEc----------CeeecCchhhhhhHHHHHHHHHHhhcCCEEEEEecCCCC
Confidence 78999999887654321 0111223333 1689999983 3333344568999999999999877
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 78 ICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
.+.+...+... ...|+++|+||+|+..
T Consensus 76 ~s~~~~~~~~~---~~~p~ilv~NK~Dl~~ 102 (142)
T TIGR02528 76 ESRFPPGFASI---FVKPVIGLVTKIDLAE 102 (142)
T ss_pred CcCCChhHHHh---ccCCeEEEEEeeccCC
Confidence 76554433322 2459999999999864
No 212
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.31 E-value=3.4e-12 Score=94.57 Aligned_cols=100 Identities=20% Similarity=0.156 Sum_probs=67.7
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++.++.... .+++. ......+.+. +..+.+.+|||||+++|......++..++++++|+|.++
T Consensus 11 g~GKTtl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 84 (180)
T cd04137 11 SVGKSSLTVQFVEGHFVESYYPTIE-NTFSKIIRYK-----GQDYHLEIVDTAGQDEYSILPQKYSIGIHGYILVYSVTS 84 (180)
T ss_pred CCCHHHHHHHHHhCCCccccCcchh-hhEEEEEEEC-----CEEEEEEEEECCChHhhHHHHHHHHhhCCEEEEEEECCC
Confidence 689999987765332 11111 1112233333 346789999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHH----HHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQA----WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~----~~~~~p~ilv~NK~Dl~~ 107 (161)
....+.. .++..+ ...++|+++|+||+|+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 120 (180)
T cd04137 85 RKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHT 120 (180)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEEchhhhh
Confidence 4432222 122222 224689999999999864
No 213
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.30 E-value=2.1e-12 Score=94.35 Aligned_cols=102 Identities=14% Similarity=0.047 Sum_probs=67.9
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+....- +.+ .+.....+... +..+.+.+|||||++++.......++.+|++++|+|+++
T Consensus 10 ~~GKSsli~~l~~~~~~~~~~~~~-~~~~~~~~~~~-----~~~~~l~~~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 83 (171)
T cd00157 10 AVGKTCLLISYTTGKFPTEYVPTV-FDNYSATVTVD-----GKQVNLGLWDTAGQEEYDRLRPLSYPNTDVFLICFSVDS 83 (171)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCce-eeeeEEEEEEC-----CEEEEEEEEeCCCcccccccchhhcCCCCEEEEEEECCC
Confidence 6899999876654331 111 11111222222 457789999999999888777888899999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchhhh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~~~ 109 (161)
..+.... .+...+.. .++|+++|+||+|+....
T Consensus 84 ~~s~~~~~~~~~~~~~~~~~~~p~ivv~nK~Dl~~~~ 120 (171)
T cd00157 84 PSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDE 120 (171)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEEccHHhhhch
Confidence 4332221 12222222 369999999999997654
No 214
>KOG0097|consensus
Probab=99.29 E-value=1.9e-12 Score=93.01 Aligned_cols=102 Identities=14% Similarity=0.105 Sum_probs=68.9
Q ss_pred CccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 1 MLCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 1 ~~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
|-.||+-++..|.+.+ ...|.+.....-+... +...++.+|||+|+++|+..++++++++-+++.|+|.+
T Consensus 20 mgvgkscllhqftekkfmadcphtigvefgtriievs-----gqkiklqiwdtagqerfravtrsyyrgaagalmvydit 94 (215)
T KOG0097|consen 20 MGVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-----GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDIT 94 (215)
T ss_pred ccccHHHHHHHHHHHHHhhcCCcccceecceeEEEec-----CcEEEEEEeecccHHHHHHHHHHHhccccceeEEEEeh
Confidence 4567776665554433 2334444444445555 66899999999999999999999999999999999998
Q ss_pred CCCChhHHHHH----HHHHHcCCCcEEEEECCcchh
Q psy2609 76 EGICAQTQVAL----KQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 76 ~~~~~~~~~~~----~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
....-.....| +.+...+..+++++||.||..
T Consensus 95 rrstynhlsswl~dar~ltnpnt~i~lignkadle~ 130 (215)
T KOG0097|consen 95 RRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLES 130 (215)
T ss_pred hhhhhhhHHHHHhhhhccCCCceEEEEecchhhhhh
Confidence 54332221111 111223444678999999965
No 215
>PRK12298 obgE GTPase CgtA; Reviewed
Probab=99.29 E-value=3.3e-12 Score=106.46 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=67.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
|||||++++.+..++ .++.|+......+.+. ...++.|+||||+.+ +......++..+|+++
T Consensus 169 NaGKSTLln~Lt~~k~~vs~~p~TT~~p~~Giv~~~------~~~~i~~vDtPGi~~~a~~~~~Lg~~~l~~i~radvlL 242 (390)
T PRK12298 169 NAGKSTFIRAVSAAKPKVADYPFTTLVPNLGVVRVD------DERSFVVADIPGLIEGASEGAGLGIRFLKHLERCRVLL 242 (390)
T ss_pred CCCHHHHHHHHhCCcccccCCCCCccCcEEEEEEeC------CCcEEEEEeCCCccccccchhhHHHHHHHHHHhCCEEE
Confidence 899999998886543 2456666555544443 134699999999753 3334556788999999
Q ss_pred EEEeCCC----CCChhHHHHHHHHHH-----cCCCcEEEEECCcchhh
Q psy2609 70 IVVDCVE----GICAQTQVALKQAWL-----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 70 lVvd~~~----~~~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|++. .+......+.+.+.. .++|+++|+||+|+...
T Consensus 243 ~VVD~s~~~~~d~~e~~~~l~~eL~~~~~~L~~kP~IlVlNKiDl~~~ 290 (390)
T PRK12298 243 HLIDIAPIDGSDPVENARIIINELEKYSPKLAEKPRWLVFNKIDLLDE 290 (390)
T ss_pred EEeccCcccccChHHHHHHHHHHHHhhhhhhcCCCEEEEEeCCccCCh
Confidence 9999872 122222333333333 36899999999998654
No 216
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.29 E-value=1.1e-11 Score=88.64 Aligned_cols=98 Identities=15% Similarity=0.101 Sum_probs=66.2
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
+||||+++..+... ..+++... ...+.+. ..++.+|||||++++...+..+++.+|++++|+|++.
T Consensus 9 ~~GKssl~~~l~~~~~~~~~~~t~~~~--~~~~~~~-------~~~~~~~D~~g~~~~~~~~~~~~~~~d~ii~v~d~~~ 79 (159)
T cd04159 9 NSGKTTLVNVIAGGQFSEDTIPTVGFN--MRKVTKG-------NVTLKVWDLGGQPRFRSMWERYCRGVNAIVYVVDAAD 79 (159)
T ss_pred CCCHHHHHHHHccCCCCcCccCCCCcc--eEEEEEC-------CEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCC
Confidence 58999997655433 23333222 2222222 5789999999999999999999999999999999985
Q ss_pred CCChhH-HHHHHHHH----HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAW----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~----~~~~p~ilv~NK~Dl~~~ 108 (161)
...... ...+..+. ..++|+++|+||+|+...
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~p~iiv~nK~D~~~~ 116 (159)
T cd04159 80 RTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGA 116 (159)
T ss_pred HHHHHHHHHHHHHHHcChhhcCCCEEEEEeCccccCC
Confidence 322111 12222221 247899999999998643
No 217
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.29 E-value=5.1e-12 Score=90.87 Aligned_cols=99 Identities=25% Similarity=0.254 Sum_probs=66.9
Q ss_pred ccccccccCCchhHHH------cCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQE------RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~------~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~ 67 (161)
+||||++++.+....- ...+... ....+. .....+.+|||||+.. +.......+..+|+
T Consensus 13 g~GKttl~~~l~~~~~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~liDtpG~~~~~~~~~~~~~~~~~~~~~~~d~ 85 (168)
T cd04163 13 NVGKSTLLNALVGQKISIVSPKPQTTRNR--IRGIYT-----DDDAQIIFVDTPGIHKPKKKLGERMVKAAWSALKDVDL 85 (168)
T ss_pred CCCHHHHHHHHhCCceEeccCCCCceece--EEEEEE-----cCCeEEEEEECCCCCcchHHHHHHHHHHHHHHHHhCCE
Confidence 6899999877654321 1111111 111122 2357899999999753 23345667889999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+++|+|++.........+.+.+...+.|.++|+||+|+..
T Consensus 86 i~~v~d~~~~~~~~~~~~~~~~~~~~~~~iiv~nK~Dl~~ 125 (168)
T cd04163 86 VLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVK 125 (168)
T ss_pred EEEEEECCCccCchHHHHHHHHHHhCCCEEEEEEchhccc
Confidence 9999999977555555666666666799999999999973
No 218
>PLN03108 Rab family protein; Provisional
Probab=99.29 E-value=7.7e-12 Score=95.75 Aligned_cols=101 Identities=17% Similarity=0.125 Sum_probs=68.9
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..+.+..+.....+.+. +..+.+.+|||||++++...+..+++.+|++++|+|++.
T Consensus 16 gvGKStLi~~l~~~~~~~~~~~ti~~~~~~~~i~~~-----~~~i~l~l~Dt~G~~~~~~~~~~~~~~ad~~vlv~D~~~ 90 (210)
T PLN03108 16 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMITID-----NKPIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 90 (210)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCccceEEEEEEEEC-----CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCc
Confidence 58999998766433 22233322222233343 446789999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHH---HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .++..+. ..++|+++|+||+|+..
T Consensus 91 ~~s~~~l~~~~~~~~~~~~~~~piiiv~nK~Dl~~ 125 (210)
T PLN03108 91 RETFNHLASWLEDARQHANANMTIMLIGNKCDLAH 125 (210)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCcc
Confidence 4333322 1222122 23789999999999864
No 219
>KOG0088|consensus
Probab=99.28 E-value=3e-13 Score=98.75 Aligned_cols=71 Identities=20% Similarity=0.140 Sum_probs=56.2
Q ss_pred CCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH----HHHHcCCCcEEEEECCcchhh
Q psy2609 38 PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK----QAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~----~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+....+.||||+|+++|..+-+.||++++++++|+|.++.-+.+-...|- .+....+-++||+||+||...
T Consensus 59 d~ra~L~IWDTAGQErfHALGPIYYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEee 133 (218)
T KOG0088|consen 59 DCRADLHIWDTAGQERFHALGPIYYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEE 133 (218)
T ss_pred cceeeeeeeeccchHhhhccCceEEeCCCceEEEEeccchHHHHHHHHHHHHHHHHhCCeeEEEEecCcccHHHh
Confidence 55778999999999999999999999999999999999765555544432 222234667899999999653
No 220
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.28 E-value=1e-11 Score=90.64 Aligned_cols=100 Identities=22% Similarity=0.163 Sum_probs=59.3
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh--------HHHHHHHH-HhcCE
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF--------SSEVSTAV-RLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~--------~~~~~~~l-~~~d~ 67 (161)
++|||++++.+....- ++.|.......+.+ +..++.||||||+.+. ......++ ..+|+
T Consensus 10 ~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~d~ 82 (168)
T cd01897 10 NVGKSSLVNKLTRAKPEVAPYPFTTKSLFVGHFDY-------KYLRWQVIDTPGLLDRPLEERNTIEMQAITALAHLRAA 82 (168)
T ss_pred CCCHHHHHHHHhcCCCccCCCCCcccceeEEEEcc-------CceEEEEEECCCcCCccccCCchHHHHHHHHHHhccCc
Confidence 6899999877654321 12233222222222 2679999999998421 11112222 33689
Q ss_pred EEEEEeCCCCCC---hhHHHHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 68 TIIVVDCVEGIC---AQTQVALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 68 ~ilVvd~~~~~~---~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
+++|+|++.... .....++..+... ++|+++|+||+|+...
T Consensus 83 ~l~v~d~~~~~~~~~~~~~~~~~~l~~~~~~~pvilv~NK~Dl~~~ 128 (168)
T cd01897 83 VLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTF 128 (168)
T ss_pred EEEEEeCCcccccchHHHHHHHHHHHhhcCcCCeEEEEEccccCch
Confidence 999999986432 1122333444443 7999999999999654
No 221
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.28 E-value=5.5e-12 Score=89.52 Aligned_cols=102 Identities=23% Similarity=0.141 Sum_probs=71.7
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH-------HHHHHHHHhcCEE
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS-------SEVSTAVRLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~-------~~~~~~l~~~d~~ 68 (161)
.+|||++++.+-.+. .++.+.......+.+. ....+.+|||||+..+. ..+..+++.+|++
T Consensus 6 gsGKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~Dt~g~~~~~~~~~~~~~~~~~~~~~~d~i 79 (163)
T cd00880 6 NAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELG------PLGPVVLIDTPGIDEAGGLGREREELARRVLERADLI 79 (163)
T ss_pred CCCHHHHHHHHhCccccccCCCCCcEECCeEEEEEec------CCCcEEEEECCCCCccccchhhHHHHHHHHHHhCCEE
Confidence 689999987665432 2233433332222222 15689999999986643 3556688999999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++|+|+..........+.......++|+++|+||+|+....
T Consensus 80 l~v~~~~~~~~~~~~~~~~~~~~~~~~~ivv~nK~D~~~~~ 120 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEE 120 (163)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcCCeEEEEEEccccCChh
Confidence 99999998776666554555566799999999999997543
No 222
>PRK11058 GTPase HflX; Provisional
Probab=99.26 E-value=1e-11 Score=104.58 Aligned_cols=100 Identities=19% Similarity=0.142 Sum_probs=69.9
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh--------HHHHHHHHHhcCEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF--------SSEVSTAVRLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~--------~~~~~~~l~~~d~~ 68 (161)
|||||++++.+..+. .++.|++.....+.+.. ...+.+|||||+.+. ...+...++.+|++
T Consensus 207 NaGKSSLlN~Lt~~~~~v~~~~~tTld~~~~~i~l~~------~~~~~l~DTaG~~r~lp~~lve~f~~tl~~~~~ADlI 280 (426)
T PRK11058 207 NAGKSTLFNRITEARVYAADQLFATLDPTLRRIDVAD------VGETVLADTVGFIRHLPHDLVAAFKATLQETRQATLL 280 (426)
T ss_pred CCCHHHHHHHHhCCceeeccCCCCCcCCceEEEEeCC------CCeEEEEecCcccccCCHHHHHHHHHHHHHhhcCCEE
Confidence 899999998876543 45788887766666541 237899999998431 12245567889999
Q ss_pred EEEEeCCCCCChhHH----HHHHHHHHcCCCcEEEEECCcchh
Q psy2609 69 IIVVDCVEGICAQTQ----VALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 69 ilVvd~~~~~~~~~~----~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++|+|+++....... .++..+...++|+++|+||+|+..
T Consensus 281 L~VvDaS~~~~~e~l~~v~~iL~el~~~~~pvIiV~NKiDL~~ 323 (426)
T PRK11058 281 LHVVDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLD 323 (426)
T ss_pred EEEEeCCCccHHHHHHHHHHHHHHhccCCCCEEEEEEcccCCC
Confidence 999999875433332 223333334799999999999864
No 223
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.26 E-value=1.6e-11 Score=88.39 Aligned_cols=101 Identities=21% Similarity=0.143 Sum_probs=66.3
Q ss_pred ccccccccCCchhHH----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+..+. .+..+.......+.+. +..+.+.+||+||++++.......++.+|++++|+|.++.
T Consensus 9 ~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 83 (160)
T cd00876 9 GVGKSAITIQFVKGTFVEEYDPTIEDSYRKTIVVD-----GETYTLDILDTAGQEEFSAMRDLYIRQGDGFILVYSITDR 83 (160)
T ss_pred CCCHHHHHHHHHhCCCCcCcCCChhHeEEEEEEEC-----CEEEEEEEEECCChHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 689999986654221 1111112112222222 3467899999999999999999999999999999999853
Q ss_pred CChhH-HHHHHHHHH----cCCCcEEEEECCcchh
Q psy2609 78 ICAQT-QVALKQAWL----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~ 107 (161)
..... ..++..+.. .++|+++|+||+|+..
T Consensus 84 ~s~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 118 (160)
T cd00876 84 ESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLEN 118 (160)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEECCcccc
Confidence 32211 222222221 3789999999999875
No 224
>PRK12299 obgE GTPase CgtA; Reviewed
Probab=99.26 E-value=8.1e-12 Score=102.24 Aligned_cols=101 Identities=16% Similarity=0.065 Sum_probs=67.6
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
|||||++++.+...+ .++.|+......+.+. +..++.+|||||+.+ +......+++.+++++
T Consensus 168 NaGKSTLln~ls~a~~~va~ypfTT~~p~~G~v~~~------~~~~~~i~D~PGli~ga~~~~gLg~~flrhie~a~vlI 241 (335)
T PRK12299 168 NAGKSTLISAVSAAKPKIADYPFTTLHPNLGVVRVD------DYKSFVIADIPGLIEGASEGAGLGHRFLKHIERTRLLL 241 (335)
T ss_pred CCCHHHHHHHHHcCCCccCCCCCceeCceEEEEEeC------CCcEEEEEeCCCccCCCCccccHHHHHHHHhhhcCEEE
Confidence 899999998775432 2456666555555442 245799999999732 3445566777899999
Q ss_pred EEEeCCCCCChhHHHHH-HHHHH-----cCCCcEEEEECCcchhh
Q psy2609 70 IVVDCVEGICAQTQVAL-KQAWL-----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 70 lVvd~~~~~~~~~~~~~-~~~~~-----~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 242 ~ViD~s~~~s~e~~~~~~~EL~~~~~~L~~kp~IIV~NKiDL~~~ 286 (335)
T PRK12299 242 HLVDIEAVDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDE 286 (335)
T ss_pred EEEcCCCCCCHHHHHHHHHHHHHhhhhcccCCeEEEEECcccCCc
Confidence 99999854322332222 22322 36899999999998643
No 225
>KOG0083|consensus
Probab=99.25 E-value=7.8e-12 Score=89.08 Aligned_cols=70 Identities=19% Similarity=0.198 Sum_probs=56.1
Q ss_pred CCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH-HHHH---HcCCCcEEEEECCcchh
Q psy2609 38 PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL-KQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~-~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
++.+++++|||+|+++|++.+..|++.+|+.++++|.....+......| ..+. +..+.+.+++||||+..
T Consensus 44 ~~kvklqiwdtagqerfrsvt~ayyrda~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~ 117 (192)
T KOG0083|consen 44 DKKVKLQIWDTAGQERFRSVTHAYYRDADALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAH 117 (192)
T ss_pred CcEEEEEEeeccchHHHhhhhHhhhcccceeeeeeecccchhHHHHHHHHHHHHHHHHhhHhHhhhccccccch
Confidence 6789999999999999999999999999999999999866554443322 2222 34577889999999964
No 226
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=99.25 E-value=1.8e-11 Score=92.69 Aligned_cols=101 Identities=27% Similarity=0.218 Sum_probs=64.3
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh---------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD---------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~---------~~~~~~~~l~~~d~ 67 (161)
+||||++++.+.... ..+.|++.....+.+. ....+.||||||+.+ +.. ....+..+|+
T Consensus 51 g~GKStLl~~l~~~~~~~~~~~~~t~~~~~~~~~~~------~~~~~~i~Dt~G~~~~~~~~~~~~~~~-~~~~~~~~d~ 123 (204)
T cd01878 51 NAGKSTLFNALTGADVYAEDQLFATLDPTTRRLRLP------DGREVLLTDTVGFIRDLPHQLVEAFRS-TLEEVAEADL 123 (204)
T ss_pred CCCHHHHHHHHhcchhccCCccceeccceeEEEEec------CCceEEEeCCCccccCCCHHHHHHHHH-HHHHHhcCCe
Confidence 789999997776543 1234444443334433 134899999999832 222 2334678999
Q ss_pred EEEEEeCCCCCChhHHH----HHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 68 TIIVVDCVEGICAQTQV----ALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~----~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+++|+|++.+....... .+..+...++|+++|+||+|+....
T Consensus 124 ii~v~D~~~~~~~~~~~~~~~~l~~~~~~~~~viiV~NK~Dl~~~~ 169 (204)
T cd01878 124 LLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNKIDLLDDE 169 (204)
T ss_pred EEEEEECCCCChhhHHHHHHHHHHHcCcCCCCEEEEEEccccCChH
Confidence 99999998765443321 2222222468999999999996543
No 227
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.25 E-value=7.5e-12 Score=96.68 Aligned_cols=100 Identities=16% Similarity=0.005 Sum_probs=62.8
Q ss_pred ccccccccCCch-h-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHH-hcCEEEEEEeC
Q psy2609 2 LCMVSSYMDSRK-D-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVR-LCDGTIIVVDC 74 (161)
Q Consensus 2 ~~g~~~~~D~~~-~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~-~~d~~ilVvd~ 74 (161)
++|||+++..+. . +..+....+.....+.+. +....+.||||||++.+ ....+++ .+|++++|+|+
T Consensus 10 gvGKTsLi~~~~~~~~~~~~~~~t~~~~~~~~~i~~~-----~~~~~l~i~Dt~G~~~~--~~~~~~~~~ad~iilV~d~ 82 (221)
T cd04148 10 GVGKSSLASQFTSGEYDDHAYDASGDDDTYERTVSVD-----GEESTLVVIDHWEQEMW--TEDSCMQYQGDAFVVVYSV 82 (221)
T ss_pred CCcHHHHHHHHhcCCcCccCcCCCccccceEEEEEEC-----CEEEEEEEEeCCCcchH--HHhHHhhcCCCEEEEEEEC
Confidence 589999987663 2 222222112222334444 44788999999999833 2345566 89999999999
Q ss_pred CCCCChhH-HHHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 75 VEGICAQT-QVALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 75 ~~~~~~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
++..+... ..++..+.. .++|+|+|+||+|+...
T Consensus 83 td~~S~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~~ 121 (221)
T cd04148 83 TDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARS 121 (221)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEEChhcccc
Confidence 86533222 222222222 46899999999998653
No 228
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=99.24 E-value=9.4e-12 Score=88.27 Aligned_cols=101 Identities=24% Similarity=0.215 Sum_probs=70.0
Q ss_pred ccccccccCC-----chhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDS-----RKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~-----~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||++++. ++.+..++++.+.....+.+. +..+.+.+|||||+.++.......++.++.++.++|...
T Consensus 11 ~~GKstl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~~~d~~~ 85 (161)
T TIGR00231 11 NVGKSTLLNRLLGNKFITEYKPGTTRNYVTTVIEED-----GKTYKFNLLDTAGQEDYRAIRRLYYRAVESSLRVFDIVI 85 (161)
T ss_pred CCCHHHHHHHHhCCCCcCcCCCCceeeeeEEEEEEC-----CEEEEEEEEECCCcccchHHHHHHHhhhhEEEEEEEEee
Confidence 5789998643 444555666666554445554 234889999999999999888888999999999998764
Q ss_pred CCC-------hhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 77 GIC-------AQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~-------~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+. .+...+..... .+.|+++++||+|+...
T Consensus 86 ~v~~~~~~~~~~~~~~~~~~~-~~~p~ivv~nK~D~~~~ 123 (161)
T TIGR00231 86 LVLDVEEILEKQTKEIIHHAE-SNVPIILVGNKIDLRDA 123 (161)
T ss_pred eehhhhhHhHHHHHHHHHhcc-cCCcEEEEEEcccCCcc
Confidence 421 12222222222 27899999999999653
No 229
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.24 E-value=1.4e-11 Score=93.50 Aligned_cols=68 Identities=16% Similarity=0.059 Sum_probs=50.4
Q ss_pred CCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH--HHHHHHH--cCCCcEEEEECCcchh
Q psy2609 38 PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV--ALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~--~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
+..+.+.+|||||+++. ....+++.+|++++|+|.++..+..... +...+.. .++|+++|+||+||..
T Consensus 63 ~~~v~l~iwDTaG~~~~--~~~~~~~~ad~iilv~d~t~~~Sf~~~~~~w~~~i~~~~~~~piilvgNK~DL~~ 134 (195)
T cd01873 63 GVSVSLRLWDTFGDHDK--DRRFAYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRY 134 (195)
T ss_pred CEEEEEEEEeCCCChhh--hhcccCCCCCEEEEEEECCChhHHHHHHHHHHHHHHHhCCCCCEEEEEEchhccc
Confidence 56789999999999763 4556889999999999998654443331 2222322 4789999999999864
No 230
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.24 E-value=4.9e-12 Score=113.13 Aligned_cols=97 Identities=18% Similarity=0.102 Sum_probs=71.8
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHH----------HHHHHH--h
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE----------VSTAVR--L 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~----------~~~~l~--~ 64 (161)
|+|||++++.+... .-+|+|++.....+.+. +.++.+|||||+.++... +..++. .
T Consensus 13 NvGKSTLfN~Ltg~~~~vgn~pGvTve~k~g~~~~~-------~~~i~lvDtPG~ysl~~~~~~~s~~E~i~~~~l~~~~ 85 (772)
T PRK09554 13 NSGKTTLFNQLTGARQRVGNWAGVTVERKEGQFSTT-------DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGD 85 (772)
T ss_pred CCCHHHHHHHHhCCCCccCCCCCceEeeEEEEEEcC-------ceEEEEEECCCccccccccccccHHHHHHHHHHhccC
Confidence 89999998777543 34688887766666555 779999999998776421 233433 6
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+|++++|+|+++... ...++.++...++|+++|+||+|+.+
T Consensus 86 aD~vI~VvDat~ler--~l~l~~ql~e~giPvIvVlNK~Dl~~ 126 (772)
T PRK09554 86 ADLLINVVDASNLER--NLYLTLQLLELGIPCIVALNMLDIAE 126 (772)
T ss_pred CCEEEEEecCCcchh--hHHHHHHHHHcCCCEEEEEEchhhhh
Confidence 899999999986432 23445566677999999999999864
No 231
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.24 E-value=6.4e-12 Score=92.40 Aligned_cols=101 Identities=16% Similarity=0.132 Sum_probs=66.6
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+... ..+.+. +.....+... +..+.+.+|||||++++......+++.+|++++|+|.++
T Consensus 10 ~~GKTsl~~~~~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~ilv~~~~~ 83 (174)
T cd04135 10 AVGKTCLLMSYANDAFPEEYVPTVF-DHYAVSVTVG-----GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN 83 (174)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcee-eeeEEEEEEC-----CEEEEEEEEeCCCcccccccccccCCCCCEEEEEEECCC
Confidence 58999997554322 222211 1111222233 446778999999999998888889999999999999986
Q ss_pred CCChhHH--HHHHHHH--HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAW--LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~--~~~~p~ilv~NK~Dl~~~ 108 (161)
.-+.... .+...+. ..++|+++|+||+|+...
T Consensus 84 ~~s~~~~~~~~~~~l~~~~~~~piivv~nK~Dl~~~ 119 (174)
T cd04135 84 PASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDD 119 (174)
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCEEEEeEchhhhcC
Confidence 5433222 1222222 358999999999998643
No 232
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.24 E-value=1.2e-11 Score=90.93 Aligned_cols=101 Identities=14% Similarity=0.023 Sum_probs=65.8
Q ss_pred ccccccccCCchhHHHc---CCccccc-eEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER---GITMKSS-SISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~---giti~~~-~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+....-. .-|+... ...+.+. ++.+++.+|||||++++......+++.+|++++|+|++..
T Consensus 11 ~~GKTsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~~~~~~ 85 (175)
T cd01870 11 ACGKTCLLIVFSKDQFPEVYVPTVFENYVADIEVD-----GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDSP 85 (175)
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccccceEEEEEEC-----CEEEEEEEEeCCCchhhhhccccccCCCCEEEEEEECCCH
Confidence 58999998665543211 1111111 1233333 4467899999999999988887889999999999999853
Q ss_pred CChhHH-H-HHHHHHH--cCCCcEEEEECCcchh
Q psy2609 78 ICAQTQ-V-ALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~-~-~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
.+.... . +...+.. .++|+++|+||+|+..
T Consensus 86 ~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 119 (175)
T cd01870 86 DSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRN 119 (175)
T ss_pred HHHHHHHHHHHHHHHhhCCCCCEEEEeeChhccc
Confidence 222221 1 1222222 4789999999999864
No 233
>PRK15467 ethanolamine utilization protein EutP; Provisional
Probab=99.23 E-value=7.7e-12 Score=91.85 Aligned_cols=91 Identities=15% Similarity=0.126 Sum_probs=61.8
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCc----hhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH----VDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~----~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+..+.. .......+.|.. . .+|||||+ .++...+..+++.+|++++|+|++.+
T Consensus 11 ~~GKstl~~~l~~~~~----~~~~~~~v~~~~-----~----~~iDtpG~~~~~~~~~~~~~~~~~~ad~il~v~d~~~~ 77 (158)
T PRK15467 11 GAGKTTLFNALQGNYT----LARKTQAVEFND-----K----GDIDTPGEYFSHPRWYHALITTLQDVDMLIYVHGANDP 77 (158)
T ss_pred CCCHHHHHHHHcCCCc----cCccceEEEECC-----C----CcccCCccccCCHHHHHHHHHHHhcCCEEEEEEeCCCc
Confidence 7899999887765442 112234444541 1 26999997 35566667778999999999999876
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 78 ICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
.+.....++.. ..++|+++++||+|+..
T Consensus 78 ~s~~~~~~~~~--~~~~~ii~v~nK~Dl~~ 105 (158)
T PRK15467 78 ESRLPAGLLDI--GVSKRQIAVISKTDMPD 105 (158)
T ss_pred ccccCHHHHhc--cCCCCeEEEEEccccCc
Confidence 54433333322 24679999999999864
No 234
>TIGR02729 Obg_CgtA Obg family GTPase CgtA. This model describes a univeral, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. This GTPase, related to the nucleolar protein Obg, is designated CgtA in bacteria. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure. Recent work done in Vibrio cholerae shows an essential role in the stringent response, in which RelA-dependent ability to synthesize the alarmone ppGpp is required for deletion of this GTPase to be lethal.
Probab=99.22 E-value=2.5e-11 Score=99.15 Aligned_cols=101 Identities=14% Similarity=0.073 Sum_probs=65.3
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
|||||+++..+...+. +..|.......+.+. ...++.+|||||+.+ +.......+..+++++
T Consensus 167 naGKSTLl~~lt~~~~~va~y~fTT~~p~ig~v~~~------~~~~~~i~D~PGli~~a~~~~gLg~~flrhierad~ll 240 (329)
T TIGR02729 167 NAGKSTLISAVSAAKPKIADYPFTTLVPNLGVVRVD------DGRSFVIADIPGLIEGASEGAGLGHRFLKHIERTRVLL 240 (329)
T ss_pred CCCHHHHHHHHhcCCccccCCCCCccCCEEEEEEeC------CceEEEEEeCCCcccCCcccccHHHHHHHHHHhhCEEE
Confidence 7999999988764431 345555444444443 137899999999742 3344555667799999
Q ss_pred EEEeCCCC---CChhH-HHHHHHHHH-----cCCCcEEEEECCcchhh
Q psy2609 70 IVVDCVEG---ICAQT-QVALKQAWL-----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 70 lVvd~~~~---~~~~~-~~~~~~~~~-----~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|++.. -.... ..+.+.+.. .++|+++|+||+|+...
T Consensus 241 ~VvD~s~~~~~~~~e~l~~l~~EL~~~~~~l~~kp~IIV~NK~DL~~~ 288 (329)
T TIGR02729 241 HLIDISPLDGRDPIEDYEIIRNELKKYSPELAEKPRIVVLNKIDLLDE 288 (329)
T ss_pred EEEcCccccccCHHHHHHHHHHHHHHhhhhhccCCEEEEEeCccCCCh
Confidence 99999853 11112 222222221 36899999999999654
No 235
>KOG0070|consensus
Probab=99.22 E-value=3.1e-11 Score=89.83 Aligned_cols=100 Identities=14% Similarity=0.030 Sum_probs=71.1
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
+||||+++-+++.-. ..-=|+..+.-.+.|. +.++.+||..|+++++..+..|+++++++|+|+|+++...
T Consensus 27 ~AGKTTILykLk~~E~vttvPTiGfnVE~v~yk-------n~~f~vWDvGGq~k~R~lW~~Y~~~t~~lIfVvDS~Dr~R 99 (181)
T KOG0070|consen 27 AAGKTTILYKLKLGEIVTTVPTIGFNVETVEYK-------NISFTVWDVGGQEKLRPLWKHYFQNTQGLIFVVDSSDRER 99 (181)
T ss_pred CCCceeeeEeeccCCcccCCCccccceeEEEEc-------ceEEEEEecCCCcccccchhhhccCCcEEEEEEeCCcHHH
Confidence 699999986664222 2222333333444555 8899999999999999999999999999999999986432
Q ss_pred h--hHHHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 80 A--QTQVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~--~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
. .-.++.+.+.. .+.|+++++||.|++.+
T Consensus 100 i~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~a 133 (181)
T KOG0070|consen 100 IEEAKEELHRMLAEPELRNAPLLVFANKQDLPGA 133 (181)
T ss_pred HHHHHHHHHHHHcCcccCCceEEEEechhhcccc
Confidence 1 11223333322 37899999999998754
No 236
>PRK00454 engB GTP-binding protein YsxC; Reviewed
Probab=99.22 E-value=2.3e-11 Score=91.16 Aligned_cols=97 Identities=18% Similarity=0.212 Sum_probs=66.3
Q ss_pred ccccccccCCchhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCc----------hhhHHHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH----------VDFSSEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~----------~~~~~~~~~~l~~ 64 (161)
+||||++++.+.... ..|.|.. +.+. ....++.||||||+ +++......+++.
T Consensus 34 ~~GKSsli~~l~~~~~~~~~~~~~~~t~~-----~~~~-----~~~~~l~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 103 (196)
T PRK00454 34 NVGKSSLINALTNRKNLARTSKTPGRTQL-----INFF-----EVNDKLRLVDLPGYGYAKVSKEEKEKWQKLIEEYLRT 103 (196)
T ss_pred CCCHHHHHHHHhCCCCcccccCCCCceeE-----EEEE-----ecCCeEEEeCCCCCCCcCCCchHHHHHHHHHHHHHHh
Confidence 689999987765432 2233322 2222 11368999999995 3455566667766
Q ss_pred c---CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 65 C---DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 65 ~---d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+ +++++|+|+..+.......+...+...++|+++++||+|+...
T Consensus 104 ~~~~~~~~~v~d~~~~~~~~~~~i~~~l~~~~~~~iiv~nK~Dl~~~ 150 (196)
T PRK00454 104 RENLKGVVLLIDSRHPLKELDLQMIEWLKEYGIPVLIVLTKADKLKK 150 (196)
T ss_pred CccceEEEEEEecCCCCCHHHHHHHHHHHHcCCcEEEEEECcccCCH
Confidence 5 5788889988776665555666666678999999999999754
No 237
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.21 E-value=2.3e-11 Score=85.12 Aligned_cols=104 Identities=22% Similarity=0.119 Sum_probs=70.5
Q ss_pred ccccccccCCchhHH----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+.... .+..|. ........... .....+.+|||||+..+.......++.+|++++|+|+..+
T Consensus 6 ~~GKStl~~~l~~~~~~~~~~~~t~-~~~~~~~~~~~---~~~~~~~l~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~~~ 81 (157)
T cd00882 6 GVGKTSLLNRLLGGEFVPEEYETTI-IDFYSKTIEVD---GKKVKLQIWDTAGQERFRSLRRLYYRGADGIILVYDVTDR 81 (157)
T ss_pred CCcHHHHHHHHHhCCcCCcccccch-hheeeEEEEEC---CEEEEEEEEecCChHHHHhHHHHHhcCCCEEEEEEECcCH
Confidence 689999987664322 122222 22222322211 3367899999999999888888899999999999999875
Q ss_pred CChhHHHHH-----HHHHHcCCCcEEEEECCcchhhh
Q psy2609 78 ICAQTQVAL-----KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 78 ~~~~~~~~~-----~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
........+ ......++|+++++||+|+....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~ivv~nk~D~~~~~ 118 (157)
T cd00882 82 ESFENVKEWLLLILINKEGENIPIILVGNKIDLPEER 118 (157)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcEEEEEecccccccc
Confidence 544333322 23334689999999999987543
No 238
>KOG0075|consensus
Probab=99.20 E-value=7e-11 Score=85.35 Aligned_cols=100 Identities=17% Similarity=-0.005 Sum_probs=68.5
Q ss_pred ccccccccCCchh-HHHc--CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC
Q psy2609 2 LCMVSSYMDSRKD-EQER--GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78 (161)
Q Consensus 2 ~~g~~~~~D~~~~-E~~~--giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~ 78 (161)
|+||+++++.-.. +..+ +-|+..... .+. .....+.+||.||+.+|...+..|.++++++++|+|+.+.-
T Consensus 30 ~sGKtt~Vn~ia~g~~~edmiptvGfnmr--k~t-----kgnvtiklwD~gGq~rfrsmWerycR~v~aivY~VDaad~~ 102 (186)
T KOG0075|consen 30 NSGKTTLVNVIARGQYLEDMIPTVGFNMR--KVT-----KGNVTIKLWDLGGQPRFRSMWERYCRGVSAIVYVVDAADPD 102 (186)
T ss_pred cCCcceEEEEEeeccchhhhcccccceeE--Eec-----cCceEEEEEecCCCccHHHHHHHHhhcCcEEEEEeecCCcc
Confidence 6899999865422 1111 122222222 222 44789999999999999999999999999999999998632
Q ss_pred --ChhHHHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 79 --CAQTQVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 79 --~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
+....++...+.+ .++|+++.+||.|++.+
T Consensus 103 k~~~sr~EL~~LL~k~~l~gip~LVLGnK~d~~~A 137 (186)
T KOG0075|consen 103 KLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGA 137 (186)
T ss_pred cchhhHHHHHHHhcchhhcCCcEEEecccccCccc
Confidence 2222333333322 48999999999999764
No 239
>PF00071 Ras: Ras family; InterPro: IPR001806 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction; PDB: 1M7B_A 2V55_B 3EG5_C 3LAW_A 1YHN_A 1T91_B 1HE8_B 3SEA_B 3T5G_A 1XTS_A ....
Probab=99.20 E-value=5.7e-11 Score=86.23 Aligned_cols=101 Identities=21% Similarity=0.128 Sum_probs=70.0
Q ss_pred ccccccccCC-----chhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDS-----RKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~-----~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++.. ++++..+.+..+.....+... +..+.+.+||++|++++.......++.+|++|+|+|.++
T Consensus 9 ~vGKtsl~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~D~~g~~~~~~~~~~~~~~~~~~ii~fd~~~ 83 (162)
T PF00071_consen 9 GVGKTSLINRLINGEFPENYIPTIGIDSYSKEVSID-----GKPVNLEIWDTSGQERFDSLRDIFYRNSDAIIIVFDVTD 83 (162)
T ss_dssp TSSHHHHHHHHHHSSTTSSSETTSSEEEEEEEEEET-----TEEEEEEEEEETTSGGGHHHHHHHHTTESEEEEEEETTB
T ss_pred CCCHHHHHHHHHhhcccccccccccccccccccccc-----ccccccccccccccccccccccccccccccccccccccc
Confidence 4789988743 344444444444444444444 568899999999999999999999999999999999985
Q ss_pred CCChhHHHHH-HHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
.-+......| ..+.. .+.|+++++||.|+..
T Consensus 84 ~~S~~~~~~~~~~i~~~~~~~~~iivvg~K~D~~~ 118 (162)
T PF00071_consen 84 EESFENLKKWLEEIQKYKPEDIPIIVVGNKSDLSD 118 (162)
T ss_dssp HHHHHTHHHHHHHHHHHSTTTSEEEEEEETTTGGG
T ss_pred cccccccccccccccccccccccceeeeccccccc
Confidence 4332222222 22221 2588999999999876
No 240
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.19 E-value=4.6e-11 Score=87.73 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=66.1
Q ss_pred ccccccccCCchhHHH--cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE--RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~--~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
+||||+++..+..... ...|.......+.+. +..+.+|||||+.++...+..+++.+|++++|+|+.+...
T Consensus 24 g~GKStLl~~l~~~~~~~~~~t~g~~~~~i~~~-------~~~~~~~D~~G~~~~~~~~~~~~~~~~~ii~v~D~~~~~~ 96 (173)
T cd04155 24 NAGKTTILKQLASEDISHITPTQGFNIKTVQSD-------GFKLNVWDIGGQRAIRPYWRNYFENTDCLIYVIDSADKKR 96 (173)
T ss_pred CCCHHHHHHHHhcCCCcccCCCCCcceEEEEEC-------CEEEEEEECCCCHHHHHHHHHHhcCCCEEEEEEeCCCHHH
Confidence 6899999877654311 112222222233333 5789999999999998889999999999999999975322
Q ss_pred hhH-HHHH----HHHHHcCCCcEEEEECCcchh
Q psy2609 80 AQT-QVAL----KQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~-~~~~----~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
... ...+ ......++|+++++||+|+..
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~p~ivv~nK~D~~~ 129 (173)
T cd04155 97 LEEAGAELVELLEEEKLAGVPVLVFANKQDLAT 129 (173)
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEEECCCCcc
Confidence 111 1111 111234799999999999865
No 241
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=99.19 E-value=6.8e-11 Score=90.13 Aligned_cols=103 Identities=17% Similarity=0.130 Sum_probs=69.7
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
+||||+++.++. +++.+++..........-. ....++.+|||+|++++...+..++.+++++++++|...
T Consensus 15 g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~Dt~gq~~~~~~~~~y~~~~~~~l~~~d~~~ 89 (219)
T COG1100 15 GVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPY-----RRNIKLQLWDTAGQEEYRSLRPEYYRGANGILIVYDSTL 89 (219)
T ss_pred CccHHHHHHHHhcCcCcccCCCceeeeeEEEEEEeC-----CCEEEEEeecCCCHHHHHHHHHHHhcCCCEEEEEEeccc
Confidence 689999985554 3333344333222222222 226789999999999999999999999999999999985
Q ss_pred C-CChhH-HHHHHHHHH---cCCCcEEEEECCcchhhh
Q psy2609 77 G-ICAQT-QVALKQAWL---EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 77 ~-~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~~~ 109 (161)
. ..... ..+...+.. .+.|+++|+||+|+....
T Consensus 90 ~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 90 RESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred chhhhHHHHHHHHHHHHhCCCCceEEEEecccccccch
Confidence 2 22222 233333333 258999999999997643
No 242
>KOG0073|consensus
Probab=99.18 E-value=7.5e-11 Score=86.43 Aligned_cols=99 Identities=22% Similarity=0.207 Sum_probs=72.4
Q ss_pred ccccccccCCchhHHHcCCc--cccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERGIT--MKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~git--i~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
|||||+++.++..|...++. +.....++.+. .+++++||..|+..+++.+..|+..+|+.|+|+|..+...
T Consensus 26 NsGKTti~~kl~~~~~~~i~pt~gf~Iktl~~~-------~~~L~iwDvGGq~~lr~~W~nYfestdglIwvvDssD~~r 98 (185)
T KOG0073|consen 26 NSGKTTIVKKLLGEDTDTISPTLGFQIKTLEYK-------GYTLNIWDVGGQKTLRSYWKNYFESTDGLIWVVDSSDRMR 98 (185)
T ss_pred CCCchhHHHHhcCCCccccCCccceeeEEEEec-------ceEEEEEEcCCcchhHHHHHHhhhccCeEEEEEECchHHH
Confidence 89999999888766643332 22233344444 8999999999999999999999999999999999975443
Q ss_pred hhH-HHHH----HHHHHcCCCcEEEEECCcchh
Q psy2609 80 AQT-QVAL----KQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~-~~~~----~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
.+. ...+ .--+..+.|++++.||.|+..
T Consensus 99 ~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~ 131 (185)
T KOG0073|consen 99 MQECKQELTELLVEERLAGAPLLVLANKQDLPG 131 (185)
T ss_pred HHHHHHHHHHHHhhhhhcCCceEEEEecCcCcc
Confidence 222 1122 222235789999999999974
No 243
>KOG0081|consensus
Probab=99.18 E-value=1.9e-10 Score=84.23 Aligned_cols=106 Identities=16% Similarity=0.113 Sum_probs=71.6
Q ss_pred cccccccC-----CchhHHHcCCccccceEEEEeecCCCC----CCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEe
Q psy2609 3 CMVSSYMD-----SRKDEQERGITMKSSSISLYYKDNKDT----PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVD 73 (161)
Q Consensus 3 ~g~~~~~D-----~~~~E~~~giti~~~~~~~~~~~~~~~----~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd 73 (161)
.||+.++- +|....-..+.|+.....+.|+...++ +..+.+.+|||+|+|+|++.+...++.|-++++++|
T Consensus 20 VGKTs~Ly~YTD~~F~~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQERFRSLTTAFfRDAMGFlLiFD 99 (219)
T KOG0081|consen 20 VGKTSFLYQYTDGKFNTQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQERFRSLTTAFFRDAMGFLLIFD 99 (219)
T ss_pred CCceEEEEEecCCcccceeEEEeecccccceEEEeccCCCCCCcceEEEEeeeccccHHHHHHHHHHHHHhhccceEEEe
Confidence 46777763 333334445555655666666644332 234679999999999999999999999999999999
Q ss_pred CCCCCChhH-HHHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 74 CVEGICAQT-QVALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 74 ~~~~~~~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
.+..-+.-. ..++.++.. .+--+++++||+||...
T Consensus 100 lT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~ 139 (219)
T KOG0081|consen 100 LTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQ 139 (219)
T ss_pred ccchHHHHHHHHHHHHHHHhhccCCCCEEEEcCccchhhh
Confidence 985433222 222333332 34457899999999754
No 244
>PTZ00132 GTP-binding nuclear protein Ran; Provisional
Probab=99.17 E-value=9.8e-11 Score=89.61 Aligned_cols=101 Identities=16% Similarity=0.154 Sum_probs=68.6
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.||||+++.++ +.+..+++........+... ++.+.+.+|||||+++|......+++.++++++|+|.++
T Consensus 19 g~GKTtLi~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~i~i~~~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 93 (215)
T PTZ00132 19 GVGKTTFVKRHLTGEFEKKYIPTLGVEVHPLKFYTN-----CGPICFNVWDTAGQEKFGGLRDGYYIKGQCAIIMFDVTS 93 (215)
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEEC-----CeEEEEEEEECCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence 58999998543 23333333333222222222 457899999999999998888899999999999999986
Q ss_pred CCChhHHHHH-HHHH--HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVAL-KQAW--LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~--~~~~p~ilv~NK~Dl~~ 107 (161)
..+......| ..+. ..++|+++++||+|+..
T Consensus 94 ~~s~~~~~~~~~~i~~~~~~~~i~lv~nK~Dl~~ 127 (215)
T PTZ00132 94 RITYKNVPNWHRDIVRVCENIPIVLVGNKVDVKD 127 (215)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEECccCcc
Confidence 5544333222 1111 24789999999999854
No 245
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=99.17 E-value=5.9e-11 Score=82.35 Aligned_cols=93 Identities=25% Similarity=0.234 Sum_probs=65.1
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh---------hHHHHHHHHHhcC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD---------FSSEVSTAVRLCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~---------~~~~~~~~l~~~d 66 (161)
+||||++++.+-.+. .++.|.......+.+. ...+.|+||||... ........+..+|
T Consensus 9 ~~GKSTlin~l~~~~~~~~~~~~~~T~~~~~~~~~~~-------~~~~~~vDtpG~~~~~~~~~~~~~~~~~~~~~~~~d 81 (116)
T PF01926_consen 9 NVGKSTLINALTGKKLAKVSNIPGTTRDPVYGQFEYN-------NKKFILVDTPGINDGESQDNDGKEIRKFLEQISKSD 81 (116)
T ss_dssp TSSHHHHHHHHHTSTSSEESSSTTSSSSEEEEEEEET-------TEEEEEEESSSCSSSSHHHHHHHHHHHHHHHHCTES
T ss_pred CCCHHHHHHHHhccccccccccccceeeeeeeeeeec-------eeeEEEEeCCCCcccchhhHHHHHHHHHHHHHHHCC
Confidence 789999987766432 2455555433344444 66888999999742 2233555567899
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEEC
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNK 102 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 102 (161)
++++|+|+..........+++.+. .+.|+++|+||
T Consensus 82 ~ii~vv~~~~~~~~~~~~~~~~l~-~~~~~i~v~NK 116 (116)
T PF01926_consen 82 LIIYVVDASNPITEDDKNILRELK-NKKPIILVLNK 116 (116)
T ss_dssp EEEEEEETTSHSHHHHHHHHHHHH-TTSEEEEEEES
T ss_pred EEEEEEECCCCCCHHHHHHHHHHh-cCCCEEEEEcC
Confidence 999999987744445566667675 88999999998
No 246
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=99.17 E-value=7.7e-11 Score=98.68 Aligned_cols=99 Identities=18% Similarity=0.172 Sum_probs=80.8
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh--------HHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF--------SSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~--------~~~~~~~l~~~d~ 67 (161)
||||+++++.+..+. -+|.|+|.....+..+ ++.+.++||+|.++- ...+...+..||.
T Consensus 227 NvGKSSLLNaL~~~d~AIVTdI~GTTRDviee~i~i~-------G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADl 299 (454)
T COG0486 227 NVGKSSLLNALLGRDRAIVTDIAGTTRDVIEEDINLN-------GIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADL 299 (454)
T ss_pred CCcHHHHHHHHhcCCceEecCCCCCccceEEEEEEEC-------CEEEEEEecCCcccCccHHHHHHHHHHHHHHHhCCE
Confidence 899999999887665 3699999887777777 899999999998542 2347788899999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+++|+|++.+....+..+.. ....+.|+++|.||+|+...
T Consensus 300 vL~v~D~~~~~~~~d~~~~~-~~~~~~~~i~v~NK~DL~~~ 339 (454)
T COG0486 300 VLFVLDASQPLDKEDLALIE-LLPKKKPIIVVLNKADLVSK 339 (454)
T ss_pred EEEEEeCCCCCchhhHHHHH-hcccCCCEEEEEechhcccc
Confidence 99999999876666666655 45567899999999999864
No 247
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.14 E-value=1.9e-10 Score=87.08 Aligned_cols=98 Identities=17% Similarity=0.167 Sum_probs=78.6
Q ss_pred ccccccccCCchh-------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCc----------hhhHHHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKD-------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH----------VDFSSEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~-------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~----------~~~~~~~~~~l~~ 64 (161)
|+||+++++.+-. ...||.|...+.. .+. -.+.|+|.||+ +.+...+..|++.
T Consensus 34 NVGKSSlIN~l~~~k~LArtSktPGrTq~iNff--~~~--------~~~~lVDlPGYGyAkv~k~~~e~w~~~i~~YL~~ 103 (200)
T COG0218 34 NVGKSSLINALTNQKNLARTSKTPGRTQLINFF--EVD--------DELRLVDLPGYGYAKVPKEVKEKWKKLIEEYLEK 103 (200)
T ss_pred cccHHHHHHHHhCCcceeecCCCCCccceeEEE--Eec--------CcEEEEeCCCcccccCCHHHHHHHHHHHHHHHhh
Confidence 8999999866643 4578888764433 232 14889999996 4567778888876
Q ss_pred ---cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 65 ---CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 65 ---~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
-.++++++|+..++...+.++.+++...++|+++++||+|..+..
T Consensus 104 R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~ 151 (200)
T COG0218 104 RANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKS 151 (200)
T ss_pred chhheEEEEEEECCCCCcHHHHHHHHHHHHcCCCeEEEEEccccCChh
Confidence 358999999999999999999999999999999999999988654
No 248
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=99.14 E-value=3.5e-10 Score=92.98 Aligned_cols=102 Identities=25% Similarity=0.358 Sum_probs=88.7
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCCC----------------CCCceeEEEEeCCCchhhHHHHHHHHH--hcCEEE
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNKD----------------TPEEYLINLIDSPGHVDFSSEVSTAVR--LCDGTI 69 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~~----------------~~~~~~i~iiDTpG~~~~~~~~~~~l~--~~d~~i 69 (161)
++|..++|-++|.|-+.+..-+.|...++ ...+.-+.|+||-|||.|.+.+..++- ..|..+
T Consensus 152 ~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~aE~~~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYgl 231 (527)
T COG5258 152 YLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEAEKAAVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGL 231 (527)
T ss_pred hhhhhhHHHhhccccceeEEEEEecCCceEeecCcccHHHHhHhhhhcccEEEEEecCCccHHHHHHHHHHhccccceEE
Confidence 46999999999999999988888875442 112356899999999999999888885 479999
Q ss_pred EEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 70 IVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 70 lVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+++.+++|++..+.+++..+....+|+|++++|+|+...+
T Consensus 232 LvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK~D~~~dd 271 (527)
T COG5258 232 LVVAADDGVTKMTKEHLGIALAMELPVIVVVTKIDMVPDD 271 (527)
T ss_pred EEEEccCCcchhhhHhhhhhhhhcCCEEEEEEecccCcHH
Confidence 9999999999999999999999999999999999998665
No 249
>KOG0074|consensus
Probab=99.13 E-value=5.7e-11 Score=85.34 Aligned_cols=101 Identities=19% Similarity=0.227 Sum_probs=77.0
Q ss_pred ccccccccCCchhHHHcCCccccce--EEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSS--ISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~--~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
||||++++..++.|..+-+|.-..+ ..+.+. +.+++++||..|+...++-+..||.+.|+.|+|+|.++.-.
T Consensus 27 nAGKTT~LKqL~sED~~hltpT~GFn~k~v~~~------g~f~LnvwDiGGqr~IRpyWsNYyenvd~lIyVIDS~D~kr 100 (185)
T KOG0074|consen 27 NAGKTTFLKQLKSEDPRHLTPTNGFNTKKVEYD------GTFHLNVWDIGGQRGIRPYWSNYYENVDGLIYVIDSTDEKR 100 (185)
T ss_pred CCcchhHHHHHccCChhhccccCCcceEEEeec------CcEEEEEEecCCccccchhhhhhhhccceEEEEEeCCchHh
Confidence 7999999999998887776654333 344444 36999999999999999999999999999999999875432
Q ss_pred h--hHHHHHH---HHHHcCCCcEEEEECCcchhh
Q psy2609 80 A--QTQVALK---QAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~--~~~~~~~---~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
. ..+++.+ ..+...+|+.++.||.|+..+
T Consensus 101 feE~~~el~ELleeeKl~~vpvlIfankQdllta 134 (185)
T KOG0074|consen 101 FEEISEELVELLEEEKLAEVPVLIFANKQDLLTA 134 (185)
T ss_pred HHHHHHHHHHHhhhhhhhccceeehhhhhHHHhh
Confidence 2 1122333 333457999999999999754
No 250
>PRK09866 hypothetical protein; Provisional
Probab=99.13 E-value=8.1e-11 Score=102.39 Aligned_cols=113 Identities=8% Similarity=0.053 Sum_probs=81.7
Q ss_pred ceeEEEEeCCCchh-----hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC--CCcEEEEECCcchhhhhcC
Q psy2609 40 EYLINLIDSPGHVD-----FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEK--IQPILVLNKIDRLILEMKL 112 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-----~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~--~p~ilv~NK~Dl~~~~~~~ 112 (161)
..+++|+||||.+. +...+..++..+|++++|+|++.+....+..+.+.+...+ .|+++|+||+|+.+.+..
T Consensus 229 ~~QIIFVDTPGIhk~~~~~L~k~M~eqL~eADvVLFVVDat~~~s~~DeeIlk~Lkk~~K~~PVILVVNKIDl~dreed- 307 (741)
T PRK09866 229 PGQLTLLDTPGPNEAGQPHLQKMLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDRNSD- 307 (741)
T ss_pred cCCEEEEECCCCCCccchHHHHHHHHHHhhCCEEEEEEeCCCCCChhHHHHHHHHHhcCCCCCEEEEEEcccCCCcccc-
Confidence 57999999999854 3445677899999999999999888888888888777766 499999999998642210
Q ss_pred ChHHHHHhH----H----HHHHHHHhhhhhhchhhhhhhhhccCCC-Ccc
Q psy2609 113 SPLDIYVHL----S----QLLEQVNAVMGELFASQVMDETAVKTTA-QDN 153 (161)
Q Consensus 113 ~~~~~~~~l----~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 153 (161)
........+ . .+.+.+|+++..+++.+.+.+.-.+-+. ++.
T Consensus 308 dkE~Lle~V~~~L~q~~i~f~eIfPVSAlkG~nid~LLdeI~~~~~l~~~ 357 (741)
T PRK09866 308 DADQVRALISGTLMKGCITPQQIFPVSSMWGYLANRARHELANNGKLPPP 357 (741)
T ss_pred hHHHHHHHHHHHHHhcCCCCceEEEEeCCCCCCHHHHHHHHHhCCCCCch
Confidence 011111111 1 2446789999999999998887665444 544
No 251
>PRK12297 obgE GTPase CgtA; Reviewed
Probab=99.12 E-value=1.1e-10 Score=98.31 Aligned_cols=99 Identities=14% Similarity=0.079 Sum_probs=63.5
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
|||||++++.+...+ -++.|+......+.+. ...++.+|||||+.. +.......+..+++++
T Consensus 168 NaGKSTLLn~Lt~ak~kIa~ypfTTl~PnlG~v~~~------~~~~~~laD~PGliega~~~~gLg~~fLrhier~~llI 241 (424)
T PRK12297 168 NVGKSTLLSVVSNAKPKIANYHFTTLVPNLGVVETD------DGRSFVMADIPGLIEGASEGVGLGHQFLRHIERTRVIV 241 (424)
T ss_pred CCCHHHHHHHHHcCCCccccCCcceeceEEEEEEEe------CCceEEEEECCCCcccccccchHHHHHHHHHhhCCEEE
Confidence 899999998776433 2455555444444433 146899999999742 2233444566699999
Q ss_pred EEEeCCCC----CChhHHHHHHHHHH-----cCCCcEEEEECCcch
Q psy2609 70 IVVDCVEG----ICAQTQVALKQAWL-----EKIQPILVLNKIDRL 106 (161)
Q Consensus 70 lVvd~~~~----~~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~ 106 (161)
+|+|++.. +......+...+.. .++|.++|+||+|+.
T Consensus 242 ~VID~s~~~~~dp~e~~~~i~~EL~~y~~~L~~kP~IVV~NK~DL~ 287 (424)
T PRK12297 242 HVIDMSGSEGRDPIEDYEKINKELKLYNPRLLERPQIVVANKMDLP 287 (424)
T ss_pred EEEeCCccccCChHHHHHHHHHHHhhhchhccCCcEEEEEeCCCCc
Confidence 99999742 11222223333332 378999999999984
No 252
>KOG0395|consensus
Probab=99.12 E-value=2.5e-10 Score=86.97 Aligned_cols=92 Identities=21% Similarity=0.213 Sum_probs=69.0
Q ss_pred CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH-HHH
Q psy2609 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA-LKQ 88 (161)
Q Consensus 10 D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~-~~~ 88 (161)
+.|.+++.+.+. +.-...+... ++.+.+.|+||+|+++|..+...+++.++++++|++.++..+.+.... +..
T Consensus 26 ~~f~~~y~ptie-d~y~k~~~v~-----~~~~~l~ilDt~g~~~~~~~~~~~~~~~~gF~lVysitd~~SF~~~~~l~~~ 99 (196)
T KOG0395|consen 26 GRFVEDYDPTIE-DSYRKELTVD-----GEVCMLEILDTAGQEEFSAMRDLYIRNGDGFLLVYSITDRSSFEEAKQLREQ 99 (196)
T ss_pred cccccccCCCcc-ccceEEEEEC-----CEEEEEEEEcCCCcccChHHHHHhhccCcEEEEEEECCCHHHHHHHHHHHHH
Confidence 677778777775 2222333334 568899999999999999999999999999999999997655444322 222
Q ss_pred H----HHcCCCcEEEEECCcchh
Q psy2609 89 A----WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 89 ~----~~~~~p~ilv~NK~Dl~~ 107 (161)
+ ....+|+++|+||+|+..
T Consensus 100 I~r~~~~~~~PivlVGNK~Dl~~ 122 (196)
T KOG0395|consen 100 ILRVKGRDDVPIILVGNKCDLER 122 (196)
T ss_pred HHHhhCcCCCCEEEEEEcccchh
Confidence 2 235689999999999975
No 253
>KOG0461|consensus
Probab=99.12 E-value=2.3e-10 Score=93.00 Aligned_cols=103 Identities=26% Similarity=0.333 Sum_probs=84.3
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCC--CCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNK--DTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~--~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
...|+.+...+||+|.+.....+.....- |.++..|+.++|||||....+.+..+....|..++|+|+..|.+.|+.+
T Consensus 34 aAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGHasLIRtiiggaqiiDlm~lviDv~kG~QtQtAE 113 (522)
T KOG0461|consen 34 AAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGHASLIRTIIGGAQIIDLMILVIDVQKGKQTQTAE 113 (522)
T ss_pred hhhccCCcccccceeEeecceeeecccccccCccccceeEEEeCCCcHHHHHHHHhhhheeeeeeEEEehhcccccccch
Confidence 34699999999999999887776643211 3567789999999999999988888888899999999999999999988
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
.+-.-.......++|+||+|....+
T Consensus 114 cLiig~~~c~klvvvinkid~lpE~ 138 (522)
T KOG0461|consen 114 CLIIGELLCKKLVVVINKIDVLPEN 138 (522)
T ss_pred hhhhhhhhccceEEEEeccccccch
Confidence 7765555566778999999986543
No 254
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=99.11 E-value=2.2e-11 Score=84.37 Aligned_cols=98 Identities=19% Similarity=0.128 Sum_probs=60.2
Q ss_pred ccccccccCCchhHHHc----CCccccceE---EEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeC
Q psy2609 2 LCMVSSYMDSRKDEQER----GITMKSSSI---SLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~----giti~~~~~---~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~ 74 (161)
.+|||+++..+..+... ...+..... ..... .....+.+||++|++.+.......+..+|++++|+|.
T Consensus 9 g~GKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~d~~g~~~~~~~~~~~~~~~d~~ilv~D~ 83 (119)
T PF08477_consen 9 GVGKTSLIRRLCGGEFPDNSVPEETSEITIGVDVIVVD-----GDRQSLQFWDFGGQEEFYSQHQFFLKKADAVILVYDL 83 (119)
T ss_dssp TSSHHHHHHHHHHSS--------SSTTSCEEEEEEEET-----TEEEEEEEEEESSSHCHHCTSHHHHHHSCEEEEEEEC
T ss_pred CCCHHHHHHHHhcCCCcccccccccCCCcEEEEEEEec-----CCceEEEEEecCccceecccccchhhcCcEEEEEEcC
Confidence 58999998766543332 111111111 11222 2355699999999998887767779999999999999
Q ss_pred CCCCChhH-HHH---HHHHHH--cCCCcEEEEECCc
Q psy2609 75 VEGICAQT-QVA---LKQAWL--EKIQPILVLNKID 104 (161)
Q Consensus 75 ~~~~~~~~-~~~---~~~~~~--~~~p~ilv~NK~D 104 (161)
++..+... ..+ +..... .++|+++|+||.|
T Consensus 84 s~~~s~~~~~~~~~~l~~~~~~~~~~piilv~nK~D 119 (119)
T PF08477_consen 84 SDPESLEYLSQLLKWLKNIRKRDKNIPIILVGNKSD 119 (119)
T ss_dssp CGHHHHHHHHHHHHHHHHHHHHSSCSEEEEEEE-TC
T ss_pred CChHHHHHHHHHHHHHHHHHccCCCCCEEEEEeccC
Confidence 85432222 112 122222 4699999999998
No 255
>PF09439 SRPRB: Signal recognition particle receptor beta subunit; InterPro: IPR019009 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. The SR receptor is a monomer consisting of the loosely membrane-associated SR-alpha homologue FtsY, while the eukaryotic SR receptor is a heterodimer of SR-alpha (70 kDa) and SR-beta (25 kDa), both of which contain a GTP-binding domain []. SR-alpha regulates the targeting of SRP-ribosome-nascent polypeptide complexes to the translocon []. SR-alpha binds to the SRP54 subunit of the SRP complex. The SR-beta subunit is a transmembrane GTPase that anchors the SR-alpha subunit (a peripheral membrane GTPase) to the ER membrane []. SR-beta interacts with the N-terminal SRX-domain of SR-alpha, which is not present in the bacterial FtsY homologue. SR-beta also functions in recruiting the SRP-nascent polypeptide to the protein-conducting channel. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase, which anchors the alpha subunit to the endoplasmic reticulum membrane []. ; PDB: 2GED_B 1NRJ_B 2GO5_2 2FH5_B.
Probab=99.11 E-value=1.1e-10 Score=87.74 Aligned_cols=106 Identities=19% Similarity=0.176 Sum_probs=59.8
Q ss_pred CccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHH---HHhcCEEEEEEeCCCC
Q psy2609 1 MLCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTA---VRLCDGTIIVVDCVEG 77 (161)
Q Consensus 1 ~~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~---l~~~d~~ilVvd~~~~ 77 (161)
.+||||.++-.+....... |+-.......+... ......+.++|+|||.+++...... +..+.++|||+|+...
T Consensus 12 s~SGKTaLf~~L~~~~~~~-T~tS~e~n~~~~~~--~~~~~~~~lvD~PGH~rlr~~~~~~~~~~~~~k~IIfvvDSs~~ 88 (181)
T PF09439_consen 12 SGSGKTALFSQLVNGKTVP-TVTSMENNIAYNVN--NSKGKKLRLVDIPGHPRLRSKLLDELKYLSNAKGIIFVVDSSTD 88 (181)
T ss_dssp TTSSHHHHHHHHHHSS----B---SSEEEECCGS--STCGTCECEEEETT-HCCCHHHHHHHHHHGGEEEEEEEEETTTH
T ss_pred CCCCHHHHHHHHhcCCcCC-eeccccCCceEEee--cCCCCEEEEEECCCcHHHHHHHHHhhhchhhCCEEEEEEeCccc
Confidence 3689999886665543222 11111333333221 1345689999999999988766665 8889999999999731
Q ss_pred CC--hhHHHHH-HHH---H--HcCCCcEEEEECCcchhhh
Q psy2609 78 IC--AQTQVAL-KQA---W--LEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 78 ~~--~~~~~~~-~~~---~--~~~~p~ilv~NK~Dl~~~~ 109 (161)
.. ....+++ ..+ . ..++|++|+.||.|+..+.
T Consensus 89 ~~~~~~~Ae~Ly~iL~~~~~~~~~~piLIacNK~Dl~~A~ 128 (181)
T PF09439_consen 89 QKELRDVAEYLYDILSDTEVQKNKPPILIACNKQDLFTAK 128 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCTT--EEEEEEE-TTSTT--
T ss_pred hhhHHHHHHHHHHHHHhhhhccCCCCEEEEEeCccccccC
Confidence 11 1111121 111 1 2478889999999998654
No 256
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=99.09 E-value=2e-11 Score=91.03 Aligned_cols=100 Identities=20% Similarity=0.186 Sum_probs=68.8
Q ss_pred ccccccccCCchhHHH--cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE--RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~--~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
+||||+++..+..... ..-|.......+.+. ++.+.+||.+|+..+...+..++..+|++|+|+|+.+.-.
T Consensus 24 ~sGKTtll~~l~~~~~~~~~pT~g~~~~~i~~~-------~~~~~~~d~gG~~~~~~~w~~y~~~~~~iIfVvDssd~~~ 96 (175)
T PF00025_consen 24 GSGKTTLLNRLKNGEISETIPTIGFNIEEIKYK-------GYSLTIWDLGGQESFRPLWKSYFQNADGIIFVVDSSDPER 96 (175)
T ss_dssp TSSHHHHHHHHHSSSEEEEEEESSEEEEEEEET-------TEEEEEEEESSSGGGGGGGGGGHTTESEEEEEEETTGGGG
T ss_pred ccchHHHHHHhhhccccccCcccccccceeeeC-------cEEEEEEeccccccccccceeeccccceeEEEEeccccee
Confidence 6899999876653221 111222333344444 7899999999999999999999999999999999985322
Q ss_pred -hhHHHHH-HHHH---HcCCCcEEEEECCcchhh
Q psy2609 80 -AQTQVAL-KQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 -~~~~~~~-~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
......+ ..+. ..++|+++++||+|+...
T Consensus 97 l~e~~~~L~~ll~~~~~~~~piLIl~NK~D~~~~ 130 (175)
T PF00025_consen 97 LQEAKEELKELLNDPELKDIPILILANKQDLPDA 130 (175)
T ss_dssp HHHHHHHHHHHHTSGGGTTSEEEEEEESTTSTTS
T ss_pred ecccccchhhhcchhhcccceEEEEeccccccCc
Confidence 1112222 2222 247999999999998753
No 257
>KOG0459|consensus
Probab=99.08 E-value=1.7e-10 Score=95.15 Aligned_cols=114 Identities=19% Similarity=0.281 Sum_probs=91.5
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC-------
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI------- 78 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~------- 78 (161)
+|.||+..+|++.|-|+......|.-. ...+++.|+|||..|...+..+..+||.+++|+++..+-
T Consensus 129 sW~ldtn~EeR~kgKtvEvGrA~FEte-------~~~ftiLDApGHk~fv~nmI~GasqAD~~vLvisar~gefetgFer 201 (501)
T KOG0459|consen 129 SWALDTNGEERDKGKTVEVGRAYFETE-------NKRFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEK 201 (501)
T ss_pred EEEEcCchhhhhccceeeeeeEEEEec-------ceeEEeeccCcccccchhhccccchhhhhhhhhhhhhchhhccccc
Confidence 688999999999999998777766544 779999999999999999999999999999999996442
Q ss_pred ChhHHHHHHHHHHcCCCc-EEEEECCcchhhhhcCC-hHHHHHhHHHHHH
Q psy2609 79 CAQTQVALKQAWLEKIQP-ILVLNKIDRLILEMKLS-PLDIYVHLSQLLE 126 (161)
Q Consensus 79 ~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~~~~~~-~~~~~~~l~~~~~ 126 (161)
..|++++..+++..++.. |+++||||-+..++... -.+.+.++..++.
T Consensus 202 GgQTREha~Lakt~gv~~lVv~vNKMddPtvnWs~eRy~E~~~k~~~fLr 251 (501)
T KOG0459|consen 202 GGQTREHAMLAKTAGVKHLIVLINKMDDPTVNWSNERYEECKEKLQPFLR 251 (501)
T ss_pred ccchhHHHHHHHhhccceEEEEEEeccCCccCcchhhHHHHHHHHHHHHH
Confidence 357888888888888776 57899999887665322 3445555665555
No 258
>PRK12296 obgE GTPase CgtA; Reviewed
Probab=99.07 E-value=4.8e-10 Score=95.85 Aligned_cols=100 Identities=19% Similarity=0.140 Sum_probs=65.5
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
|||||++++.+...+ .++.|+......+.+. ..+|.||||||+.. +......++..+|++|
T Consensus 169 NAGKSTLln~Ls~akpkIadypfTTl~P~lGvv~~~-------~~~f~laDtPGliegas~g~gLg~~fLrhieradvLv 241 (500)
T PRK12296 169 SAGKSSLISALSAAKPKIADYPFTTLVPNLGVVQAG-------DTRFTVADVPGLIPGASEGKGLGLDFLRHIERCAVLV 241 (500)
T ss_pred CCCHHHHHHHHhcCCccccccCcccccceEEEEEEC-------CeEEEEEECCCCccccchhhHHHHHHHHHHHhcCEEE
Confidence 899999998775432 2566666555555554 57899999999632 2233455677899999
Q ss_pred EEEeCCCC-----CChhHH----HHHHHH----------HHcCCCcEEEEECCcchhh
Q psy2609 70 IVVDCVEG-----ICAQTQ----VALKQA----------WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 70 lVvd~~~~-----~~~~~~----~~~~~~----------~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|++.. +..... ++..+. ...++|.|+|+||+|++..
T Consensus 242 ~VVD~s~~e~~rdp~~d~~~i~~EL~~y~~~l~~~~~~~~l~~kP~IVVlNKiDL~da 299 (500)
T PRK12296 242 HVVDCATLEPGRDPLSDIDALEAELAAYAPALDGDLGLGDLAERPRLVVLNKIDVPDA 299 (500)
T ss_pred EEECCcccccccCchhhHHHHHHHHHHhhhcccccchhhhhcCCCEEEEEECccchhh
Confidence 99999741 111111 122221 1246899999999999753
No 259
>KOG0091|consensus
Probab=99.06 E-value=2.6e-10 Score=83.79 Aligned_cols=101 Identities=15% Similarity=0.044 Sum_probs=65.5
Q ss_pred cccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 3 CMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 3 ~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
.||+.++-.| ++=..+.+.++.-..-++... +...++++|||+|+++|++.+.+||+++-++++|+|.++.
T Consensus 19 vgkssll~~ft~gkfaelsdptvgvdffarlie~~p----g~riklqlwdtagqerfrsitksyyrnsvgvllvyditnr 94 (213)
T KOG0091|consen 19 VGKSSLLRYFTEGKFAELSDPTVGVDFFARLIELRP----GYRIKLQLWDTAGQERFRSITKSYYRNSVGVLLVYDITNR 94 (213)
T ss_pred ccHHHHHHHHhcCcccccCCCccchHHHHHHHhcCC----CcEEEEEEeeccchHHHHHHHHHHhhcccceEEEEeccch
Confidence 3555554333 333455555553333333332 5578999999999999999999999999999999999854
Q ss_pred CChhHHHHHH-----HHHHcCCCc-EEEEECCcchh
Q psy2609 78 ICAQTQVALK-----QAWLEKIQP-ILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~~~~~-----~~~~~~~p~-ilv~NK~Dl~~ 107 (161)
-+....+.|- .......++ .||+.|+||.+
T Consensus 95 ~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~S 130 (213)
T KOG0091|consen 95 ESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQS 130 (213)
T ss_pred hhHHHHHHHHHHHHHhcCCCCeeEEEEeccccchhh
Confidence 4333322221 111123334 58999999975
No 260
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=99.06 E-value=1.8e-09 Score=83.78 Aligned_cols=97 Identities=11% Similarity=0.153 Sum_probs=68.5
Q ss_pred ccccccccCCchhHHHcCCccccceEEEE-eecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCCh
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLY-YKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICA 80 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~-~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~ 80 (161)
++||+++++.+..+.... ++.....++. +. ....+++++||||+. ..+...++.+|++++|+|+..+...
T Consensus 49 ~~GKstl~~~l~~~~~~~-~~~~~~g~i~i~~-----~~~~~i~~vDtPg~~---~~~l~~ak~aDvVllviDa~~~~~~ 119 (225)
T cd01882 49 GVGKTTLIKSLVKNYTKQ-NISDIKGPITVVT-----GKKRRLTFIECPNDI---NAMIDIAKVADLVLLLIDASFGFEM 119 (225)
T ss_pred CCCHHHHHHHHHhhcccC-ccccccccEEEEe-----cCCceEEEEeCCchH---HHHHHHHHhcCEEEEEEecCcCCCH
Confidence 568999886665443221 1111111111 22 236789999999964 4556678999999999999999888
Q ss_pred hHHHHHHHHHHcCCCcE-EEEECCcchh
Q psy2609 81 QTQVALKQAWLEKIQPI-LVLNKIDRLI 107 (161)
Q Consensus 81 ~~~~~~~~~~~~~~p~i-lv~NK~Dl~~ 107 (161)
++..++..+...++|.+ +|+||+|+..
T Consensus 120 ~~~~i~~~l~~~g~p~vi~VvnK~D~~~ 147 (225)
T cd01882 120 ETFEFLNILQVHGFPRVMGVLTHLDLFK 147 (225)
T ss_pred HHHHHHHHHHHcCCCeEEEEEeccccCC
Confidence 88888888888889965 5999999864
No 261
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.05 E-value=5.8e-10 Score=81.75 Aligned_cols=94 Identities=16% Similarity=0.013 Sum_probs=60.5
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++..+. .+..+ +.......+.+. +..+.+.+|||+|+++ ..+++.+|++++|+|.++
T Consensus 10 gvGKTsli~~~~~~~f~~~~~~--~~~~~~~~i~~~-----~~~~~l~i~D~~g~~~-----~~~~~~~~~~ilv~d~~~ 77 (158)
T cd04103 10 QSGKSALVHRYLTGSYVQLESP--EGGRFKKEVLVD-----GQSHLLLIRDEGGAPD-----AQFASWVDAVIFVFSLEN 77 (158)
T ss_pred CCcHHHHHHHHHhCCCCCCCCC--CccceEEEEEEC-----CEEEEEEEEECCCCCc-----hhHHhcCCEEEEEEECCC
Confidence 478999876542 22211 111111234444 4467899999999975 346788999999999997
Q ss_pred CCChhHH-HHHHHHHH----cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAWL----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~----~~~p~ilv~NK~Dl~~ 107 (161)
..+.+.. .++..+.. .++|+++|+||+|+..
T Consensus 78 ~~sf~~~~~~~~~i~~~~~~~~~piilvgnK~Dl~~ 113 (158)
T cd04103 78 EASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISE 113 (158)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEeeHHHhhh
Confidence 6554442 22233322 3579999999999853
No 262
>KOG1144|consensus
Probab=99.03 E-value=6.6e-10 Score=97.29 Aligned_cols=104 Identities=30% Similarity=0.404 Sum_probs=81.9
Q ss_pred cccccccCCchhHH-----HcCCccccceEEEEeecCC--------CC---CCceeEEEEeCCCchhhHHHHHHHHHhcC
Q psy2609 3 CMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNK--------DT---PEEYLINLIDSPGHVDFSSEVSTAVRLCD 66 (161)
Q Consensus 3 ~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~--------~~---~~~~~i~iiDTpG~~~~~~~~~~~l~~~d 66 (161)
.|||.++|...... .-|+|-.+....|...+-. .. .+-=-+.+||||||+.|..+...+...||
T Consensus 486 TGKTKlld~ir~tNVqegeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvIdtpghEsFtnlRsrgsslC~ 565 (1064)
T KOG1144|consen 486 TGKTKLLDKIRGTNVQEGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVIDTPGHESFTNLRSRGSSLCD 565 (1064)
T ss_pred ccchHHHHHhhccccccccccceeeeccccccchHHHHHHHHHHHhhhhhhcCCCeeEEecCCCchhhhhhhhccccccc
Confidence 58888888876532 3466665554444332100 00 11124899999999999999999999999
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.+|+|+|..+|+.+++.+.+++++..+.|+|+++||+|+.
T Consensus 566 ~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRL 605 (1064)
T KOG1144|consen 566 LAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRL 605 (1064)
T ss_pred eEEEEeehhccCCcchhHHHHHHHhcCCCeEEeehhhhhh
Confidence 9999999999999999999999999999999999999986
No 263
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.00 E-value=6.1e-10 Score=83.44 Aligned_cols=100 Identities=12% Similarity=0.039 Sum_probs=63.6
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||+++..+. .+..+.+.... ...+.+. +....+.+|||||++++......+++.+|++++|+|.+.
T Consensus 11 g~GKStLl~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~g~~~~~~~~~~~~~~a~~~llv~~i~~ 84 (187)
T cd04129 11 ACGKTSLLSVFTLGEFPEEYHPTVFENY-VTDCRVD-----GKPVQLALWDTAGQEEYERLRPLSYSKAHVILIGFAVDT 84 (187)
T ss_pred CCCHHHHHHHHHhCCCCcccCCcccceE-EEEEEEC-----CEEEEEEEEECCCChhccccchhhcCCCCEEEEEEECCC
Confidence 479999875553 22222221111 1122233 345789999999998887666677899999999999975
Q ss_pred CCChhHH--HHHHHHH--HcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ--VALKQAW--LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~--~~~~p~ilv~NK~Dl~~ 107 (161)
.-+.... .+...+. ..++|+++|+||+|+..
T Consensus 85 ~~s~~~~~~~~~~~i~~~~~~~piilvgnK~Dl~~ 119 (187)
T cd04129 85 PDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQ 119 (187)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEeeChhhhh
Confidence 4332222 1222222 23799999999999854
No 264
>KOG0393|consensus
Probab=98.97 E-value=7e-10 Score=84.17 Aligned_cols=101 Identities=13% Similarity=0.065 Sum_probs=73.7
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+|||.++ +.|++++.+.+. +.-..++... +++.+.+.+|||+|+++|.+.....|..+|+++++++...
T Consensus 14 a~GKT~ll~~~t~~~fp~~yvPTVF-dnys~~v~V~----dg~~v~L~LwDTAGqedYDrlRplsY~~tdvfl~cfsv~~ 88 (198)
T KOG0393|consen 14 AVGKTCLLISYTTNAFPEEYVPTVF-DNYSANVTVD----DGKPVELGLWDTAGQEDYDRLRPLSYPQTDVFLLCFSVVS 88 (198)
T ss_pred CcCceEEEEEeccCcCcccccCeEE-ccceEEEEec----CCCEEEEeeeecCCCcccccccccCCCCCCEEEEEEEcCC
Confidence 36777764 788899988886 4444444442 1668899999999999998888889999999999999875
Q ss_pred CCChhH--HHHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQT--QVALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~--~~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+... ..++..+.. .++|+|||++|.||..
T Consensus 89 p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~ 123 (198)
T KOG0393|consen 89 PESFENVKSKWIPEIKHHCPNVPIILVGTKADLRD 123 (198)
T ss_pred hhhHHHHHhhhhHHHHhhCCCCCEEEEeehHHhhh
Confidence 443222 122222222 4799999999999973
No 265
>KOG0076|consensus
Probab=98.96 E-value=1.5e-09 Score=80.32 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=73.4
Q ss_pred ccccccccCCchhHHHc----------CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEE
Q psy2609 2 LCMVSSYMDSRKDEQER----------GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIV 71 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~----------giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilV 71 (161)
||||++|+...+..... ..|+..+..++..+ ...+.|||..|++...+.+..||..++++++|
T Consensus 27 nAGKttfLe~~Kt~~~~~~~~l~~~ki~~tvgLnig~i~v~-------~~~l~fwdlgGQe~lrSlw~~yY~~~H~ii~v 99 (197)
T KOG0076|consen 27 NAGKTTFLEALKTDFSKAYGGLNPSKITPTVGLNIGTIEVC-------NAPLSFWDLGGQESLRSLWKKYYWLAHGIIYV 99 (197)
T ss_pred cCCchhHHHHHHHHHHhhhcCCCHHHeecccceeecceeec-------cceeEEEEcCChHHHHHHHHHHHHHhceeEEe
Confidence 79999999777665542 22333333334433 55899999999999999999999999999999
Q ss_pred EeCCCCCCh-----hHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 72 VDCVEGICA-----QTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 72 vd~~~~~~~-----~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|+++.-.. ..+.+...-...++|+++.+||-|+.+.
T Consensus 100 iDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~ 141 (197)
T KOG0076|consen 100 IDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNA 141 (197)
T ss_pred ecCCCHHHHHHHHHHHHHHHHHHHhcCCchhhhcchhhhhhh
Confidence 999863221 1123334445579999999999998764
No 266
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=98.95 E-value=6.1e-09 Score=74.96 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=64.1
Q ss_pred ccccccccCCchh-------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh----------hHHHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKD-------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD----------FSSEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~-------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~----------~~~~~~~~l~~ 64 (161)
.||||++++.+.. +...+.|... ..+.. ..++.+|||||+.. +......++..
T Consensus 9 g~GKTtL~~~l~~~~~~~~~~~~~~~t~~~----~~~~~------~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~~~~~ 78 (170)
T cd01876 9 NVGKSSLINALTNRKKLARTSKTPGKTQLI----NFFNV------NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLEN 78 (170)
T ss_pred CCCHHHHHHHHhcCCceeeecCCCCcceeE----EEEEc------cCeEEEecCCCccccccCHHHHHHHHHHHHHHHHh
Confidence 5899999876651 1122222211 11221 22899999999633 44445555554
Q ss_pred ---cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 65 ---CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 65 ---~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+++++++|...........+.+++...+.|+++++||+|+...
T Consensus 79 ~~~~~~~~~v~d~~~~~~~~~~~~~~~l~~~~~~vi~v~nK~D~~~~ 125 (170)
T cd01876 79 RENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKK 125 (170)
T ss_pred ChhhhEEEEEEEcCcCCCHhHHHHHHHHHHcCCCEEEEEEchhcCCh
Confidence 46889999998766666666677777778999999999998643
No 267
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=98.92 E-value=2.8e-10 Score=82.37 Aligned_cols=88 Identities=22% Similarity=0.163 Sum_probs=60.5
Q ss_pred ccccccccCCchhHHH-cCCccccceEEEEeecCCCCCCceeEEEEeCCCc----hhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQE-RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH----VDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~----~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
-||||+++..+..+.. ...| ..+.|.. .+|||||- ..|..........||.+++|.|+++
T Consensus 11 g~GKTTL~q~L~~~~~~~~KT-----q~i~~~~----------~~IDTPGEyiE~~~~y~aLi~ta~dad~V~ll~dat~ 75 (143)
T PF10662_consen 11 GSGKTTLAQALNGEEIRYKKT-----QAIEYYD----------NTIDTPGEYIENPRFYHALIVTAQDADVVLLLQDATE 75 (143)
T ss_pred CCCHHHHHHHHcCCCCCcCcc-----ceeEecc----------cEEECChhheeCHHHHHHHHHHHhhCCEEEEEecCCC
Confidence 3799999877765442 2222 2233431 36999993 4577777888889999999999986
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
...... -......+.|+|-|++|+|+..
T Consensus 76 ~~~~~p---P~fa~~f~~pvIGVITK~Dl~~ 103 (143)
T PF10662_consen 76 PRSVFP---PGFASMFNKPVIGVITKIDLPS 103 (143)
T ss_pred CCccCC---chhhcccCCCEEEEEECccCcc
Confidence 432211 1334456789999999999983
No 268
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.92 E-value=4.1e-09 Score=84.18 Aligned_cols=71 Identities=21% Similarity=0.258 Sum_probs=49.5
Q ss_pred CCceeEEEEeCCCchhhHH---------------------HHH-----HHHH--hcCEEEEEEeCC-CCCChhHHHHHHH
Q psy2609 38 PEEYLINLIDSPGHVDFSS---------------------EVS-----TAVR--LCDGTIIVVDCV-EGICAQTQVALKQ 88 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~---------------------~~~-----~~l~--~~d~~ilVvd~~-~~~~~~~~~~~~~ 88 (161)
+...++.+|||||+.++.. ... ..+. .+++++++++.+ .++...+..+++.
T Consensus 60 g~~~~l~iiDTpGfgd~~~~~~~~~~i~~yi~~q~~~~l~~e~~~~r~~~~~d~rvh~~ly~i~~~~~~l~~~D~~~lk~ 139 (276)
T cd01850 60 GVKLKLTVIDTPGFGDNINNSDCWKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKR 139 (276)
T ss_pred CEEEEEEEEecCCccccccchhhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCceEEEEEEEeCCCCCCCHHHHHHHHH
Confidence 4457899999999644311 111 1111 267888888877 4677777777777
Q ss_pred HHHcCCCcEEEEECCcchhhh
Q psy2609 89 AWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 89 ~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+.. ++|+++|+||+|+...+
T Consensus 140 l~~-~v~vi~VinK~D~l~~~ 159 (276)
T cd01850 140 LSK-RVNIIPVIAKADTLTPE 159 (276)
T ss_pred Hhc-cCCEEEEEECCCcCCHH
Confidence 764 89999999999996543
No 269
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=98.90 E-value=2.1e-09 Score=83.80 Aligned_cols=68 Identities=22% Similarity=0.277 Sum_probs=48.2
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
++|||++++.+..... ++.|.+.....+.+. +.++.+|||||+.+ +......+++.+|+++
T Consensus 10 ~~GKStLl~~Ltg~~~~v~~~~~tT~~~~~g~~~~~-------~~~i~l~DtpG~~~~~~~~~~~~~~~l~~~~~ad~il 82 (233)
T cd01896 10 SVGKSTLLSKLTNTKSEVAAYEFTTLTCVPGVLEYK-------GAKIQLLDLPGIIEGAADGKGRGRQVIAVARTADLIL 82 (233)
T ss_pred CCCHHHHHHHHHCCCccccCCCCccccceEEEEEEC-------CeEEEEEECCCcccccccchhHHHHHHHhhccCCEEE
Confidence 6899999877765432 233444444444454 67899999999743 3345677899999999
Q ss_pred EEEeCCC
Q psy2609 70 IVVDCVE 76 (161)
Q Consensus 70 lVvd~~~ 76 (161)
+|+|+++
T Consensus 83 ~V~D~t~ 89 (233)
T cd01896 83 MVLDATK 89 (233)
T ss_pred EEecCCc
Confidence 9999874
No 270
>KOG0071|consensus
Probab=98.89 E-value=3.2e-09 Score=76.32 Aligned_cols=100 Identities=16% Similarity=0.046 Sum_probs=71.1
Q ss_pred ccccccccCCchhHHHcCC--ccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERGI--TMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~gi--ti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
.||||+++-+++.++.-.. |+..+.-.+.|. +.+++.||..|+.+.++.++.|+.++.++|||+|+.+.-.
T Consensus 27 ~aGKTtiLyKLkl~~~~~~ipTvGFnvetVtyk-------N~kfNvwdvGGqd~iRplWrhYy~gtqglIFV~Dsa~~dr 99 (180)
T KOG0071|consen 27 AAGKTTILYKLKLGQSVTTIPTVGFNVETVTYK-------NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDSADRDR 99 (180)
T ss_pred cCCceehhhHHhcCCCcccccccceeEEEEEee-------eeEEeeeeccCchhhhHHHHhhccCCceEEEEEeccchhh
Confidence 3899999988887764322 222233344455 7899999999999999999999999999999999875311
Q ss_pred --hhHHHHHHHH---HHcCCCcEEEEECCcchhh
Q psy2609 80 --AQTQVALKQA---WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 --~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~ 108 (161)
....++.+.+ ....+|+++..||.|++.+
T Consensus 100 ~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A 133 (180)
T KOG0071|consen 100 IEEARNELHRIINDREMRDAIILILANKQDLPDA 133 (180)
T ss_pred HHHHHHHHHHHhCCHhhhcceEEEEecCcccccc
Confidence 1111221222 1246888999999999864
No 271
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.84 E-value=1.9e-08 Score=76.00 Aligned_cols=99 Identities=17% Similarity=0.122 Sum_probs=68.4
Q ss_pred ccccccccCCchhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh-------HHHHH----HHHH
Q psy2609 2 LCMVSSYMDSRKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF-------SSEVS----TAVR 63 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~-------~~~~~----~~l~ 63 (161)
++||+++++..-.+. .++.|.........+. +.++.+|||||..+. ...+. .+..
T Consensus 10 g~GKSsl~N~ilg~~~~~~~~~~~~~T~~~~~~~~~~~-------~~~i~viDTPG~~d~~~~~~~~~~~i~~~~~~~~~ 82 (196)
T cd01852 10 GAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWD-------GRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLSAP 82 (196)
T ss_pred CCCHHHHHHHhhCCCccccccCCCCcccccceeeEEEC-------CeEEEEEECcCCCCccCChHHHHHHHHHHHHhcCC
Confidence 689999987775443 2366766666666665 679999999997653 11222 2234
Q ss_pred hcCEEEEEEeCCCCCChhHHHHHHHHHHc-C----CCcEEEEECCcchhh
Q psy2609 64 LCDGTIIVVDCVEGICAQTQVALKQAWLE-K----IQPILVLNKIDRLIL 108 (161)
Q Consensus 64 ~~d~~ilVvd~~~~~~~~~~~~~~~~~~~-~----~p~ilv~NK~Dl~~~ 108 (161)
+.+++++|+++.. +...+...++.+... + .+++++++++|....
T Consensus 83 g~~~illVi~~~~-~t~~d~~~l~~l~~~fg~~~~~~~ivv~T~~d~l~~ 131 (196)
T cd01852 83 GPHAFLLVVPLGR-FTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEG 131 (196)
T ss_pred CCEEEEEEEECCC-cCHHHHHHHHHHHHHhChHhHhcEEEEEECccccCC
Confidence 5789999999987 777777776666542 2 577899999997643
No 272
>KOG1423|consensus
Probab=98.84 E-value=1.5e-08 Score=81.35 Aligned_cols=107 Identities=22% Similarity=0.185 Sum_probs=67.9
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCch---------h---hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV---------D---FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~---------~---~~~~~~~~l~~~d~~i 69 (161)
|+||+++.+.+-.-+-.-++.+..+..-... ...+.+..|+.|.||||.- . +....+.++..||+++
T Consensus 82 NvGKStLtN~mig~kv~~vS~K~~TTr~~il-gi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a~q~AD~vv 160 (379)
T KOG1423|consen 82 NVGKSTLTNQMIGQKVSAVSRKVHTTRHRIL-GIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDAAQNADCVV 160 (379)
T ss_pred CcchhhhhhHhhCCccccccccccceeeeee-EEEecCceEEEEecCCcccccchhhhHHHHHHhhhCHHHHHhhCCEEE
Confidence 8999999988765554444444332211110 0012458899999999941 1 2335677888999999
Q ss_pred EEEeCCCCCChhHHHHHHHHHH-cCCCcEEEEECCcchhhh
Q psy2609 70 IVVDCVEGICAQTQVALKQAWL-EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 70 lVvd~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~~ 109 (161)
+|+|+...-....-..+..+.. .++|-|+|.||+|.....
T Consensus 161 Vv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k 201 (379)
T KOG1423|consen 161 VVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQK 201 (379)
T ss_pred EEEeccCCcCccChHHHHHHHHHhcCCceeeccchhcchhh
Confidence 9999984222222223333333 489999999999987543
No 273
>COG1084 Predicted GTPase [General function prediction only]
Probab=98.82 E-value=2.6e-08 Score=80.46 Aligned_cols=102 Identities=24% Similarity=0.183 Sum_probs=63.2
Q ss_pred ccccccccCCch---hHH-HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHh-cCEE
Q psy2609 2 LCMVSSYMDSRK---DEQ-ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRL-CDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~---~E~-~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~-~d~~ 68 (161)
|.||++++.... .|- .+-.| ++.+++.+.. .+..++++|||||.-+ ...++..+++. .+++
T Consensus 178 NVGKSSlv~~lT~AkpEvA~YPFT--TK~i~vGhfe----~~~~R~QvIDTPGlLDRPl~ErN~IE~qAi~AL~hl~~~I 251 (346)
T COG1084 178 NVGKSSLVRKLTTAKPEVAPYPFT--TKGIHVGHFE----RGYLRIQVIDTPGLLDRPLEERNEIERQAILALRHLAGVI 251 (346)
T ss_pred CCcHHHHHHHHhcCCCccCCCCcc--ccceeEeeee----cCCceEEEecCCcccCCChHHhcHHHHHHHHHHHHhcCeE
Confidence 789999975542 222 22222 3345555542 3356999999999632 34456677765 6788
Q ss_pred EEEEeCCCCC--ChhH-HHHHHHH-HHcCCCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEGI--CAQT-QVALKQA-WLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~~--~~~~-~~~~~~~-~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+|++|.+... +... ..++..+ ...+.|+++|+||+|....+
T Consensus 252 lF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e 296 (346)
T COG1084 252 LFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEE 296 (346)
T ss_pred EEEEcCccccCCCHHHHHHHHHHHHHhcCCCeEEEEecccccchh
Confidence 9999998533 2222 2223333 34578999999999987543
No 274
>KOG0090|consensus
Probab=98.81 E-value=5.8e-08 Score=74.25 Aligned_cols=102 Identities=13% Similarity=0.141 Sum_probs=64.6
Q ss_pred CccccccccCCchh-HHHcCC-ccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHH---hcCEEEEEEeCC
Q psy2609 1 MLCMVSSYMDSRKD-EQERGI-TMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVR---LCDGTIIVVDCV 75 (161)
Q Consensus 1 ~~~g~~~~~D~~~~-E~~~gi-ti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~---~~d~~ilVvd~~ 75 (161)
|++|||.++=.+.. +....+ ++..+...+.++ +....++|-|||.+.+.....++. .+-++|||+|+.
T Consensus 47 ~dSGKT~LF~qL~~gs~~~TvtSiepn~a~~r~g-------s~~~~LVD~PGH~rlR~kl~e~~~~~~~akaiVFVVDSa 119 (238)
T KOG0090|consen 47 SDSGKTSLFTQLITGSHRGTVTSIEPNEATYRLG-------SENVTLVDLPGHSRLRRKLLEYLKHNYSAKAIVFVVDSA 119 (238)
T ss_pred CCCCceeeeeehhcCCccCeeeeeccceeeEeec-------CcceEEEeCCCcHHHHHHHHHHccccccceeEEEEEecc
Confidence 57899887644322 222222 222222333333 445899999999999999888888 689999999987
Q ss_pred CCCC---hhHHHHHHHH-----HHcCCCcEEEEECCcchhhh
Q psy2609 76 EGIC---AQTQVALKQA-----WLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 76 ~~~~---~~~~~~~~~~-----~~~~~p~ilv~NK~Dl~~~~ 109 (161)
.... ...+.+...+ ...++|++++.||.|+..+.
T Consensus 120 ~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAk 161 (238)
T KOG0090|consen 120 TFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAK 161 (238)
T ss_pred ccchhhHHHHHHHHHHHHhhccccCCCCEEEEecchhhhhcC
Confidence 4332 1112221211 23467888999999998765
No 275
>KOG1143|consensus
Probab=98.76 E-value=2.3e-08 Score=82.33 Aligned_cols=99 Identities=19% Similarity=0.169 Sum_probs=80.7
Q ss_pred CCchhHHHcCCccccceEEEEeecCCC--------------CCCceeEEEEeCCCchhhHHHHHHHHHh--cCEEEEEEe
Q psy2609 10 DSRKDEQERGITMKSSSISLYYKDNKD--------------TPEEYLINLIDSPGHVDFSSEVSTAVRL--CDGTIIVVD 73 (161)
Q Consensus 10 D~~~~E~~~giti~~~~~~~~~~~~~~--------------~~~~~~i~iiDTpG~~~~~~~~~~~l~~--~d~~ilVvd 73 (161)
=++++|...|.|...+.-.+.|+.... ...++.++|||.+||.+|.+.+..++.+ .+++++|++
T Consensus 204 FRh~HEiqsGrTSsis~evlGFd~~g~vVNY~~~~taEEi~e~SSKlvTfiDLAGh~kY~~TTi~gLtgY~Ph~A~LvVs 283 (591)
T KOG1143|consen 204 FRHPHEIQSGRTSSISNEVLGFDNRGKVVNYAQNMTAEEIVEKSSKLVTFIDLAGHAKYQKTTIHGLTGYTPHFACLVVS 283 (591)
T ss_pred hcchhhhccCcccccchhcccccccccccchhhcccHHHHHhhhcceEEEeecccchhhheeeeeecccCCCceEEEEEE
Confidence 356788888888766555555542210 2234679999999999999998888876 589999999
Q ss_pred CCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 74 CVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+..|+...+++++..+...++|++++++|+|+...
T Consensus 284 A~~Gi~~tTrEHLgl~~AL~iPfFvlvtK~Dl~~~ 318 (591)
T KOG1143|consen 284 ADRGITWTTREHLGLIAALNIPFFVLVTKMDLVDR 318 (591)
T ss_pred cCCCCccccHHHHHHHHHhCCCeEEEEEeeccccc
Confidence 99999999999999999999999999999999865
No 276
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.76 E-value=2.9e-08 Score=75.27 Aligned_cols=65 Identities=18% Similarity=0.075 Sum_probs=46.7
Q ss_pred eeEEEEeCCCchhhHHHHHH-----HHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 41 YLINLIDSPGHVDFSSEVST-----AVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~-----~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
..+.+|||||+.+....... .+..+|++++|.+ ..+...+..++..+...+.|+++|+||+|+..
T Consensus 52 ~~l~l~DtpG~~~~~~~~~~~l~~~~~~~~d~~l~v~~--~~~~~~d~~~~~~l~~~~~~~ilV~nK~D~~~ 121 (197)
T cd04104 52 PNVTLWDLPGIGSTAFPPDDYLEEMKFSEYDFFIIISS--TRFSSNDVKLAKAIQCMGKKFYFVRTKVDRDL 121 (197)
T ss_pred CCceEEeCCCCCcccCCHHHHHHHhCccCcCEEEEEeC--CCCCHHHHHHHHHHHHhCCCEEEEEecccchh
Confidence 47899999998543222222 2556788888754 34566666777777777899999999999954
No 277
>KOG4252|consensus
Probab=98.73 E-value=4.4e-09 Score=78.48 Aligned_cols=72 Identities=19% Similarity=0.243 Sum_probs=56.6
Q ss_pred CCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HH--HHcCCCcEEEEECCcchhhh
Q psy2609 38 PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK-QA--WLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~-~~--~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++...+.+|||+|+++|-..+..||++|.+.++|++.++..+.....-|+ .. ....+|.++|-||+|+....
T Consensus 66 ~Edvr~mlWdtagqeEfDaItkAyyrgaqa~vLVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds 140 (246)
T KOG4252|consen 66 IEDVRSMLWDTAGQEEFDAITKAYYRGAQASVLVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDS 140 (246)
T ss_pred HHHHHHHHHHhccchhHHHHHHHHhccccceEEEEecccHHHHHHHHHHHHHHHHHhccCCeEEeeccchhhHhh
Confidence 44667889999999999999999999999999999998655443333332 22 22589999999999998654
No 278
>KOG1191|consensus
Probab=98.69 E-value=3.4e-08 Score=83.36 Aligned_cols=100 Identities=21% Similarity=0.135 Sum_probs=78.0
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh---------hHHHHHHHHHhcC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD---------FSSEVSTAVRLCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~---------~~~~~~~~l~~~d 66 (161)
|+||+++++.+..|. .+|.|+|.....+..+ ++.+.++||+|..+ -...+...+..+|
T Consensus 278 NvGKSSLlNaL~~~drsIVSpv~GTTRDaiea~v~~~-------G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~ad 350 (531)
T KOG1191|consen 278 NVGKSSLLNALSREDRSIVSPVPGTTRDAIEAQVTVN-------GVPVRLSDTAGIREESNDGIEALGIERARKRIERAD 350 (531)
T ss_pred CCCHHHHHHHHhcCCceEeCCCCCcchhhheeEeecC-------CeEEEEEeccccccccCChhHHHhHHHHHHHHhhcC
Confidence 899999999887665 5799999988888877 88999999999865 1234777888999
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHH------------cCCCcEEEEECCcchhh
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWL------------EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~------------~~~p~ilv~NK~Dl~~~ 108 (161)
++++|+|+......++..+.+.+.. .+.|++++.||.|+...
T Consensus 351 vi~~vvda~~~~t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~ 404 (531)
T KOG1191|consen 351 VILLVVDAEESDTESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSK 404 (531)
T ss_pred EEEEEecccccccccchHHHHHHHHhccceEEEeccccccceEEEechhhccCc
Confidence 9999999976555555554444433 23678999999999754
No 279
>PF04670 Gtr1_RagA: Gtr1/RagA G protein conserved region; InterPro: IPR006762 GTR1 was first identified in Saccharomyces cerevisiae (Baker's yeast) as a suppressor of a mutation in RCC1. RCC1 catalyzes guanine nucleotide exchange on Ran, a well characterised nuclear Ras-like small G protein that plays an essential role in the import and export of proteins and RNAs across the nuclear membrane through the nuclear pore complex. RCC1 is located inside the nucleus, bound to chromatin. The concentration of GTP within the cell is ~30 times higher than the concentration of GDP, thus resulting in the preferential production of the GTP form of Ran by RCC1 within the nucleus. Gtr1p is located within both the cytoplasm and the nucleus and has been reported to play a role in cell growth. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1 and Rag A and Gtr1p belong to the sixth subfamily of the Ras-like small GTPase superfamily []. ; GO: 0005525 GTP binding, 0005634 nucleus, 0005737 cytoplasm; PDB: 3R7W_B 2Q3F_B 3LLU_A.
Probab=98.69 E-value=9.5e-08 Score=74.59 Aligned_cols=102 Identities=15% Similarity=0.151 Sum_probs=59.2
Q ss_pred ccccccc----cCCch-hHH-HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHH-----HHHHHHhcCEEEE
Q psy2609 2 LCMVSSY----MDSRK-DEQ-ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE-----VSTAVRLCDGTII 70 (161)
Q Consensus 2 ~~g~~~~----~D~~~-~E~-~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~-----~~~~l~~~d~~il 70 (161)
.+|||.+ ..+++ .|- .-|.|++.....+.+. ....+++||+||+..+... ....++.+.++|+
T Consensus 9 ~SGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~------~~~~l~iwD~pGq~~~~~~~~~~~~~~if~~v~~LIy 82 (232)
T PF04670_consen 9 RSGKTSIRSVIFHKYSPRDTLRLEPTIDVEKSHVRFL------SFLPLNIWDCPGQDDFMENYFNSQREEIFSNVGVLIY 82 (232)
T ss_dssp TSSHHHHHHHHHS---GGGGGG-----SEEEEEEECT------TSCEEEEEEE-SSCSTTHTTHTCCHHHHHCTESEEEE
T ss_pred CCChhhHHHHHHcCCCchhccccCCcCCceEEEEecC------CCcEEEEEEcCCccccccccccccHHHHHhccCEEEE
Confidence 4788874 45553 333 2256776665555543 2569999999999766543 5777899999999
Q ss_pred EEeCC-CCCChhHHHH---HHHHH--HcCCCcEEEEECCcchhhh
Q psy2609 71 VVDCV-EGICAQTQVA---LKQAW--LEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 71 Vvd~~-~~~~~~~~~~---~~~~~--~~~~p~ilv~NK~Dl~~~~ 109 (161)
|+|+. +.....-... +..+. ..++.+.+++.|+|+...+
T Consensus 83 V~D~qs~~~~~~l~~~~~~i~~l~~~sp~~~v~vfiHK~D~l~~~ 127 (232)
T PF04670_consen 83 VFDAQSDDYDEDLAYLSDCIEALRQYSPNIKVFVFIHKMDLLSED 127 (232)
T ss_dssp EEETT-STCHHHHHHHHHHHHHHHHHSTT-EEEEEEE-CCCS-HH
T ss_pred EEEcccccHHHHHHHHHHHHHHHHHhCCCCeEEEEEeecccCCHH
Confidence 99998 3322222222 22222 2467778999999997654
No 280
>KOG0077|consensus
Probab=98.65 E-value=3.9e-08 Score=72.48 Aligned_cols=100 Identities=17% Similarity=0.143 Sum_probs=69.2
Q ss_pred ccccccccCCchhHHHcCCcc---ccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERGITM---KSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti---~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~ 78 (161)
|||||+++.-++.++- +..+ ....-.+... +.+++-+|..||..-...+..++..+|++++++|+.+..
T Consensus 30 NAGKTTLLHMLKdDrl-~qhvPTlHPTSE~l~Ig-------~m~ftt~DLGGH~qArr~wkdyf~~v~~iv~lvda~d~e 101 (193)
T KOG0077|consen 30 NAGKTTLLHMLKDDRL-GQHVPTLHPTSEELSIG-------GMTFTTFDLGGHLQARRVWKDYFPQVDAIVYLVDAYDQE 101 (193)
T ss_pred CCchhhHHHHHccccc-cccCCCcCCChHHheec-------CceEEEEccccHHHHHHHHHHHHhhhceeEeeeehhhHH
Confidence 8999999977776662 1111 1111112222 678999999999999999999999999999999997543
Q ss_pred ChhHH-HH----HHHHHHcCCCcEEEEECCcchhhh
Q psy2609 79 CAQTQ-VA----LKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 79 ~~~~~-~~----~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+.. .. +....-.++|+++.+||+|.+.+-
T Consensus 102 r~~es~~eld~ll~~e~la~vp~lilgnKId~p~a~ 137 (193)
T KOG0077|consen 102 RFAESKKELDALLSDESLATVPFLILGNKIDIPYAA 137 (193)
T ss_pred HhHHHHHHHHHHHhHHHHhcCcceeecccccCCCcc
Confidence 32221 11 111223589999999999997643
No 281
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=98.64 E-value=3.8e-08 Score=85.87 Aligned_cols=99 Identities=21% Similarity=0.183 Sum_probs=74.4
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh------HHHHHHHHH--hcCEE
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF------SSEVSTAVR--LCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~------~~~~~~~l~--~~d~~ 68 (161)
|+|||++++.+...+. +|+|++.+...+.+. ++.+.++|.||...+ ...++.++. ..|++
T Consensus 13 NvGKTtlFN~LTG~~q~VgNwpGvTVEkkeg~~~~~-------~~~i~ivDLPG~YSL~~~S~DE~Var~~ll~~~~D~i 85 (653)
T COG0370 13 NVGKTTLFNALTGANQKVGNWPGVTVEKKEGKLKYK-------GHEIEIVDLPGTYSLTAYSEDEKVARDFLLEGKPDLI 85 (653)
T ss_pred CccHHHHHHHHhccCceecCCCCeeEEEEEEEEEec-------CceEEEEeCCCcCCCCCCCchHHHHHHHHhcCCCCEE
Confidence 8899999988876665 599999998888888 668999999996443 223556664 36999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+-|+|+++- .......-++...++|++++.|++|.....
T Consensus 86 vnVvDAtnL--eRnLyltlQLlE~g~p~ilaLNm~D~A~~~ 124 (653)
T COG0370 86 VNVVDATNL--ERNLYLTLQLLELGIPMILALNMIDEAKKR 124 (653)
T ss_pred EEEcccchH--HHHHHHHHHHHHcCCCeEEEeccHhhHHhc
Confidence 999999841 112223334566799999999999997653
No 282
>KOG0466|consensus
Probab=98.59 E-value=1.5e-07 Score=75.76 Aligned_cols=132 Identities=20% Similarity=0.250 Sum_probs=93.3
Q ss_pred CCchhHHHcCCccccceEEEE-eecCCC-------------------------CCCc----eeEEEEeCCCchhhHHHHH
Q psy2609 10 DSRKDEQERGITMKSSSISLY-YKDNKD-------------------------TPEE----YLINLIDSPGHVDFSSEVS 59 (161)
Q Consensus 10 D~~~~E~~~giti~~~~~~~~-~~~~~~-------------------------~~~~----~~i~iiDTpG~~~~~~~~~ 59 (161)
=+|+.|.+|.+|++..+..-. |+-.++ ...+ ..+.|+|+|||.-....+.
T Consensus 64 vrFK~ELERNITIKLGYANAKIYkc~~~kCprP~cy~s~gS~k~d~~~c~~~g~~~~~klvRHVSfVDCPGHDiLMaTML 143 (466)
T KOG0466|consen 64 VRFKNELERNITIKLGYANAKIYKCDDPKCPRPGCYRSFGSSKEDRPPCDRPGCEGKMKLVRHVSFVDCPGHDILMATML 143 (466)
T ss_pred EEehhhhhcceeEEeccccceEEecCCCCCCCcchhhccCCCCCCCCCcccCCCCCceEEEEEEEeccCCchHHHHHHHh
Confidence 368899999999987665433 211110 0111 3689999999998888999
Q ss_pred HHHHhcCEEEEEEeCCCC-CChhHHHHHHHHHHcCCC-cEEEEECCcchhhhhcCChHHHHHhHHHHH--------HHHH
Q psy2609 60 TAVRLCDGTIIVVDCVEG-ICAQTQVALKQAWLEKIQ-PILVLNKIDRLILEMKLSPLDIYVHLSQLL--------EQVN 129 (161)
Q Consensus 60 ~~l~~~d~~ilVvd~~~~-~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~--------~~~~ 129 (161)
.+....|++++++.+.+. +++|+.+++....-.+.+ ++++-||+||.+.+ ...+.++++.+|+ ..+|
T Consensus 144 nGaAvmDaalLlIA~NEsCPQPQTsEHLaaveiM~LkhiiilQNKiDli~e~---~A~eq~e~I~kFi~~t~ae~aPiiP 220 (466)
T KOG0466|consen 144 NGAAVMDAALLLIAGNESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKES---QALEQHEQIQKFIQGTVAEGAPIIP 220 (466)
T ss_pred cchHHhhhhhhhhhcCCCCCCCchhhHHHHHHHhhhceEEEEechhhhhhHH---HHHHHHHHHHHHHhccccCCCceee
Confidence 998999999999998865 467887776555555555 46789999998766 2455566666665 3367
Q ss_pred hhhhhhchhhhhhhh
Q psy2609 130 AVMGELFASQVMDET 144 (161)
Q Consensus 130 ~~~~~~~~~~~~~~~ 144 (161)
+++.-.|+.|.+-+-
T Consensus 221 isAQlkyNId~v~ey 235 (466)
T KOG0466|consen 221 ISAQLKYNIDVVCEY 235 (466)
T ss_pred ehhhhccChHHHHHH
Confidence 777777777766554
No 283
>KOG0096|consensus
Probab=98.59 E-value=5e-08 Score=73.30 Aligned_cols=100 Identities=16% Similarity=0.133 Sum_probs=69.2
Q ss_pred ccccccCCc-hhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC-
Q psy2609 4 MVSSYMDSR-KDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC- 79 (161)
Q Consensus 4 g~~~~~D~~-~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~- 79 (161)
||+++..+. ..|- ..-.|+........+..+ .+.+++..|||+|++.+......++-.+.|+++++|.+.-+.
T Consensus 22 gKtt~vkr~ltgeFe~~y~at~Gv~~~pl~f~tn---~g~irf~~wdtagqEk~gglrdgyyI~~qcAiimFdVtsr~t~ 98 (216)
T KOG0096|consen 22 GKTTFVKRHLTGEFEKTYPATLGVEVHPLLFDTN---RGQIRFNVWDTAGQEKKGGLRDGYYIQGQCAIIMFDVTSRFTY 98 (216)
T ss_pred cccchhhhhhcccceecccCcceeEEeeeeeecc---cCcEEEEeeecccceeecccccccEEecceeEEEeeeeehhhh
Confidence 577776433 3333 334455555455555432 335899999999999999999999999999999999984432
Q ss_pred ----hhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 80 ----AQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ----~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.+...+.+ .++|+++|+||.|....
T Consensus 99 ~n~~rwhrd~~rv~--~NiPiv~cGNKvDi~~r 129 (216)
T KOG0096|consen 99 KNVPRWHRDLVRVR--ENIPIVLCGNKVDIKAR 129 (216)
T ss_pred hcchHHHHHHHHHh--cCCCeeeeccceecccc
Confidence 3333333322 46999999999997543
No 284
>COG2262 HflX GTPases [General function prediction only]
Probab=98.58 E-value=7.3e-08 Score=79.89 Aligned_cols=132 Identities=20% Similarity=0.138 Sum_probs=80.2
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-----h---HHHHHHHHHhcCEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-----F---SSEVSTAVRLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-----~---~~~~~~~l~~~d~~ 68 (161)
||||+++++.+..+. .--.|.+.....+.+.. +.++.+.||=|+-+ . .+.+......+|.+
T Consensus 202 NAGKSTL~N~LT~~~~~~~d~LFATLdpttR~~~l~~------g~~vlLtDTVGFI~~LP~~LV~AFksTLEE~~~aDll 275 (411)
T COG2262 202 NAGKSTLFNALTGADVYVADQLFATLDPTTRRIELGD------GRKVLLTDTVGFIRDLPHPLVEAFKSTLEEVKEADLL 275 (411)
T ss_pred cccHHHHHHHHhccCeeccccccccccCceeEEEeCC------CceEEEecCccCcccCChHHHHHHHHHHHHhhcCCEE
Confidence 899999998665333 33456666666665541 57899999999743 1 22344555678999
Q ss_pred EEEEeCCCCCC-hhH---HHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhhhchhhhhhhh
Q psy2609 69 IIVVDCVEGIC-AQT---QVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFASQVMDET 144 (161)
Q Consensus 69 ilVvd~~~~~~-~~~---~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 144 (161)
+.|+|++++.. .+. ..++..+....+|+|+|.||+|+.............. . ..+++++....+.+.+.+.
T Consensus 276 lhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~NKiD~~~~~~~~~~~~~~~---~--~~v~iSA~~~~gl~~L~~~ 350 (411)
T COG2262 276 LHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLNKIDLLEDEEILAELERGS---P--NPVFISAKTGEGLDLLRER 350 (411)
T ss_pred EEEeecCChhHHHHHHHHHHHHHHcCCCCCCEEEEEecccccCchhhhhhhhhcC---C--CeEEEEeccCcCHHHHHHH
Confidence 99999987532 111 2223333335789999999999875442111111111 1 3455666666666555543
No 285
>KOG0463|consensus
Probab=98.53 E-value=6.7e-08 Score=79.72 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=86.3
Q ss_pred CchhHHHcCCccccceEEEEeecC-----CC-------------CCCceeEEEEeCCCchhhHHHHHHHHHh--cCEEEE
Q psy2609 11 SRKDEQERGITMKSSSISLYYKDN-----KD-------------TPEEYLINLIDSPGHVDFSSEVSTAVRL--CDGTII 70 (161)
Q Consensus 11 ~~~~E~~~giti~~~~~~~~~~~~-----~~-------------~~~~~~i~iiDTpG~~~~~~~~~~~l~~--~d~~il 70 (161)
++++|.+.|.|.....--+.|... +| .....-++|||.+|||+|.+.+..++.+ .|..++
T Consensus 171 RHKHEiESGRTSSVGNDILGFD~~GNvVNKPD~Hg~~LdWvkIce~saKviTFIDLAGHEkYLKTTvFGMTGH~PDf~ML 250 (641)
T KOG0463|consen 171 RHKHEIESGRTSSVGNDILGFDVHGNVVNKPDPHGHNLDWVKICEDSAKVITFIDLAGHEKYLKTTVFGMTGHMPDFTML 250 (641)
T ss_pred hhhhhcccCccccccccceeeccccccccCCCCCCCcccceeeccccceeEEEEeccchhhhhheeeeccccCCCCceEE
Confidence 346788888776544433333211 11 1123468999999999999987777655 799999
Q ss_pred EEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHH--HHHHHhhhh
Q psy2609 71 VVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQL--LEQVNAVMG 133 (161)
Q Consensus 71 Vvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~--~~~~~~~~~ 133 (161)
++.+..|+-..+.+++.+....++|+++|++|+|...++...+.+....++.+. +..+|++..
T Consensus 251 MiGaNaGIiGmTKEHLgLALaL~VPVfvVVTKIDMCPANiLqEtmKll~rllkS~gcrK~PvlVr 315 (641)
T KOG0463|consen 251 MIGANAGIIGMTKEHLGLALALHVPVFVVVTKIDMCPANILQETMKLLTRLLKSPGCRKLPVLVR 315 (641)
T ss_pred EecccccceeccHHhhhhhhhhcCcEEEEEEeeccCcHHHHHHHHHHHHHHhcCCCcccCcEEEe
Confidence 999999999999999999999999999999999998776433333333333322 445565443
No 286
>PRK13768 GTPase; Provisional
Probab=98.51 E-value=4.5e-07 Score=71.56 Aligned_cols=68 Identities=24% Similarity=0.200 Sum_probs=47.3
Q ss_pred eEEEEeCCCchhhH---HHHHHH---HHh--cCEEEEEEeCCCCCChhHHHHHHHHH-----HcCCCcEEEEECCcchhh
Q psy2609 42 LINLIDSPGHVDFS---SEVSTA---VRL--CDGTIIVVDCVEGICAQTQVALKQAW-----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 42 ~i~iiDTpG~~~~~---~~~~~~---l~~--~d~~ilVvd~~~~~~~~~~~~~~~~~-----~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.+|||||+.+.. ...... +.. ++++++|+|+..+....+.....++. ..++|+++|+||+|+.+.
T Consensus 98 ~~~~~d~~g~~~~~~~~~~~~~~~~~l~~~~~~~ii~liD~~~~~~~~d~~~~~~l~~~~~~~~~~~~i~v~nK~D~~~~ 177 (253)
T PRK13768 98 DYVLVDTPGQMELFAFRESGRKLVERLSGSSKSVVVFLIDAVLAKTPSDFVSLLLLALSVQLRLGLPQIPVLNKADLLSE 177 (253)
T ss_pred CEEEEeCCcHHHHHhhhHHHHHHHHHHHhcCCeEEEEEechHHhCCHHHHHHHHHHHHHHHHHcCCCEEEEEEhHhhcCc
Confidence 68999999986632 233222 333 79999999998766655543332221 468999999999999765
Q ss_pred h
Q psy2609 109 E 109 (161)
Q Consensus 109 ~ 109 (161)
+
T Consensus 178 ~ 178 (253)
T PRK13768 178 E 178 (253)
T ss_pred h
Confidence 4
No 287
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=98.47 E-value=1.4e-06 Score=68.41 Aligned_cols=70 Identities=16% Similarity=0.086 Sum_probs=55.9
Q ss_pred ceeEEEEeCCCchh-------------hHHHHHHHHHh-cCEEEEEEeCCCCCChhH-HHHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVD-------------FSSEVSTAVRL-CDGTIIVVDCVEGICAQT-QVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-------------~~~~~~~~l~~-~d~~ilVvd~~~~~~~~~-~~~~~~~~~~~~p~ilv~NK~D 104 (161)
...+.++||||+.+ +..++..|++. .+.+++|+|++.++..++ ..+.+.+...+.|.++|+||+|
T Consensus 124 ~~~ltLIDlPGl~~~~~~~~~~~~~~~i~~lv~~yi~~~~~IIL~Vvda~~d~~~~d~l~ia~~ld~~~~rti~ViTK~D 203 (240)
T smart00053 124 VLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKLAKEVDPQGERTIGVITKLD 203 (240)
T ss_pred CCceEEEeCCCccccccCCccHHHHHHHHHHHHHHHhCccCeEEEEEECCCCCCchhHHHHHHHHHHcCCcEEEEEECCC
Confidence 35799999999842 33457888884 468999999998887766 5777888888999999999999
Q ss_pred chhhh
Q psy2609 105 RLILE 109 (161)
Q Consensus 105 l~~~~ 109 (161)
.....
T Consensus 204 ~~~~~ 208 (240)
T smart00053 204 LMDEG 208 (240)
T ss_pred CCCcc
Confidence 87543
No 288
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=98.44 E-value=8.3e-08 Score=70.07 Aligned_cols=51 Identities=20% Similarity=0.147 Sum_probs=39.3
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 58 VSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 58 ~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
...++..+|.+++|+|+..+.......+.+.+.. .++|+|+|+||+|+...
T Consensus 2 ~~~~l~~aD~il~VvD~~~p~~~~~~~i~~~l~~~~~~~p~ilVlNKiDl~~~ 54 (157)
T cd01858 2 LYKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPT 54 (157)
T ss_pred hhHhhhhCCEEEEEEECCCCccccCHHHHHHHHhccCCCCEEEEEEchhcCCH
Confidence 4578899999999999987665555555555544 34899999999999643
No 289
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=98.42 E-value=2.3e-07 Score=75.61 Aligned_cols=74 Identities=18% Similarity=0.102 Sum_probs=46.8
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecC----------C------CCC-CceeEEEEeCCCc----hhhH
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDN----------K------DTP-EEYLINLIDSPGH----VDFS 55 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~----------~------~~~-~~~~i~iiDTpG~----~~~~ 55 (161)
|+|||++++.+..... +..|++.......+... + .++ ....+.+|||||. +++.
T Consensus 8 nvGKStLfn~lt~~~~~~~~~pftT~~p~~g~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~v~i~l~D~aGlv~ga~~~~ 87 (318)
T cd01899 8 NAGKSTFFNAATLADVEIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGLVPGAHEGK 87 (318)
T ss_pred CCCHHHHHHHHhCCCCcccCCCCccccceeEEEEEecCCCchhhhhhhcccccccccCcCcceEEEEECCCCCCCccchh
Confidence 7999999877654432 24455544332222100 0 001 3468999999997 4443
Q ss_pred H---HHHHHHHhcCEEEEEEeCC
Q psy2609 56 S---EVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 56 ~---~~~~~l~~~d~~ilVvd~~ 75 (161)
+ .....++.||++++|+|+.
T Consensus 88 glg~~fL~~ir~aD~ii~Vvd~~ 110 (318)
T cd01899 88 GLGNKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred hHHHHHHHHHHHCCEEEEEEeCC
Confidence 3 4556799999999999997
No 290
>KOG1489|consensus
Probab=98.39 E-value=1.1e-06 Score=71.09 Aligned_cols=101 Identities=19% Similarity=0.245 Sum_probs=62.8
Q ss_pred ccccccccCCchhHHHc-----CCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQER-----GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~-----giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
||||++++..+..++.+ -.|+......+.|. +-.++.+-|.||.-+ +.-.-...+..++..+
T Consensus 206 NAGKSTLL~als~AKpkVa~YaFTTL~P~iG~v~yd------df~q~tVADiPGiI~GAh~nkGlG~~FLrHiER~~~l~ 279 (366)
T KOG1489|consen 206 NAGKSTLLNALSRAKPKVAHYAFTTLRPHIGTVNYD------DFSQITVADIPGIIEGAHMNKGLGYKFLRHIERCKGLL 279 (366)
T ss_pred CCcHHHHHHHhhccCCcccccceeeeccccceeecc------ccceeEeccCccccccccccCcccHHHHHHHHhhceEE
Confidence 89999999887665532 11222222222222 234699999999632 2333556677899999
Q ss_pred EEEeCCCC--CChhH--HHHHHHHH-----HcCCCcEEEEECCcchhh
Q psy2609 70 IVVDCVEG--ICAQT--QVALKQAW-----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 70 lVvd~~~~--~~~~~--~~~~~~~~-----~~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|...+ ..+++ ..++..+. ..+.|.++|+||+|++..
T Consensus 280 fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~ea 327 (366)
T KOG1489|consen 280 FVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEA 327 (366)
T ss_pred EEEECCCcccCCHHHHHHHHHHHHHHHhhhhccCceEEEEeccCchhH
Confidence 99999855 12222 22222222 247899999999999643
No 291
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=98.38 E-value=8.2e-07 Score=63.75 Aligned_cols=52 Identities=21% Similarity=0.165 Sum_probs=43.1
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc--CCCcEEEEECCcchh
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLE--KIQPILVLNKIDRLI 107 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~ 107 (161)
+.+..++..+|++++|+|+..+...+...+.+++... ++|+++|+||+|+..
T Consensus 3 ~~~~~~i~~aD~vl~ViD~~~p~~~~~~~l~~~l~~~~~~k~~iivlNK~DL~~ 56 (141)
T cd01857 3 RQLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLT 56 (141)
T ss_pred HHHHHHHhhCCEEEEEEEccCCcccCCHHHHHHHHhccCCCcEEEEEechhcCC
Confidence 4677889999999999999987776666666666655 899999999999864
No 292
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=98.36 E-value=1.4e-06 Score=70.93 Aligned_cols=82 Identities=17% Similarity=0.067 Sum_probs=58.7
Q ss_pred ccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC---------C--hhHHHHHHHH
Q psy2609 21 TMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI---------C--AQTQVALKQA 89 (161)
Q Consensus 21 ti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~---------~--~~~~~~~~~~ 89 (161)
|.......+.+. +..+.+||++|+...++.+..++.+++++++|+|.++-- . ......+..+
T Consensus 148 T~Gi~~~~f~~~-------~~~~~~~DvgGq~~~R~kW~~~f~~v~~iifvv~lsd~d~~~~e~~~~nrl~esl~~f~~i 220 (317)
T cd00066 148 TTGIVETKFTIK-------NLKFRMFDVGGQRSERKKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFDSI 220 (317)
T ss_pred cCCeeEEEEEec-------ceEEEEECCCCCcccchhHHHHhCCCCEEEEEEEchhcccccccCCcchHHHHHHHHHHHH
Confidence 334444455555 789999999999999999999999999999999987421 1 1111222222
Q ss_pred HH----cCCCcEEEEECCcchhhh
Q psy2609 90 WL----EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 90 ~~----~~~p~ilv~NK~Dl~~~~ 109 (161)
.. .++|++|++||.|+....
T Consensus 221 ~~~~~~~~~pill~~NK~D~f~~k 244 (317)
T cd00066 221 CNSRWFANTSIILFLNKKDLFEEK 244 (317)
T ss_pred HhCccccCCCEEEEccChHHHHHh
Confidence 22 478999999999987644
No 293
>KOG0072|consensus
Probab=98.34 E-value=1.4e-06 Score=63.03 Aligned_cols=70 Identities=16% Similarity=0.051 Sum_probs=52.4
Q ss_pred CceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC--ChhHHHHHHHH---HHcCCCcEEEEECCcchhh
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI--CAQTQVALKQA---WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~--~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~ 108 (161)
++.++.+||..|+-.+...++.|+.++|.+|+|+|.++.. +....++...+ ...+..++++.||+|...+
T Consensus 60 KNLk~~vwdLggqtSirPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~anKqD~~~~ 134 (182)
T KOG0072|consen 60 KNLKFQVWDLGGQTSIRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVFANKQDYSGA 134 (182)
T ss_pred ccccceeeEccCcccccHHHHHHhcccceEEEEEeccchhhhhhhHHHHHHHhccHhhcCceEEEEeccccchhh
Confidence 4789999999999999999999999999999999987532 22222222222 2235667789999998654
No 294
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=98.28 E-value=4e-06 Score=69.04 Aligned_cols=82 Identities=17% Similarity=0.112 Sum_probs=59.2
Q ss_pred ccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC---------C--hhHHHHHHHH
Q psy2609 21 TMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI---------C--AQTQVALKQA 89 (161)
Q Consensus 21 ti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~---------~--~~~~~~~~~~ 89 (161)
|.......+.+. +..+.+||.+|+...++.|..++.+++++++|+|.++-- . ......+..+
T Consensus 171 T~Gi~~~~f~~~-------~~~~~~~DvgGqr~~R~kW~~~f~~v~~IiFvvdlSd~d~~~~Ed~~~nrl~esl~~f~~l 243 (342)
T smart00275 171 TTGIQETAFIVK-------KLFFRMFDVGGQRSERKKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFESI 243 (342)
T ss_pred ccceEEEEEEEC-------CeEEEEEecCCchhhhhhHHHHhCCCCEEEEEEECcccccchhccCcchHHHHHHHHHHHH
Confidence 444444555555 678999999999999999999999999999999988421 1 1112222222
Q ss_pred HH----cCCCcEEEEECCcchhhh
Q psy2609 90 WL----EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 90 ~~----~~~p~ilv~NK~Dl~~~~ 109 (161)
.. .++|++|++||.|+....
T Consensus 244 ~~~~~~~~~piil~~NK~D~~~~K 267 (342)
T smart00275 244 CNSRWFANTSIILFLNKIDLFEEK 267 (342)
T ss_pred HcCccccCCcEEEEEecHHhHHHH
Confidence 21 478999999999998654
No 295
>KOG1673|consensus
Probab=98.28 E-value=2.4e-06 Score=62.61 Aligned_cols=99 Identities=16% Similarity=0.158 Sum_probs=70.0
Q ss_pred ccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 3 CMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 3 ~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
.||++++ +.+.+|+.....+..-..++... +-...+.+||..|+++|....+.+-.++-++++++|.+..
T Consensus 31 iGKTs~mvkYV~~~~de~~~q~~GvN~mdkt~~i~-----~t~IsfSIwdlgG~~~~~n~lPiac~dsvaIlFmFDLt~r 105 (205)
T KOG1673|consen 31 IGKTSLMVKYVQNEYDEEYTQTLGVNFMDKTVSIR-----GTDISFSIWDLGGQREFINMLPIACKDSVAILFMFDLTRR 105 (205)
T ss_pred cCceeeehhhhcchhHHHHHHHhCccceeeEEEec-----ceEEEEEEEecCCcHhhhccCceeecCcEEEEEEEecCch
Confidence 4777776 44556665555554444555555 4478999999999999999999999999999999999865
Q ss_pred CChhHHHHH-HHHHHcCCC--cEEEEECCcch
Q psy2609 78 ICAQTQVAL-KQAWLEKIQ--PILVLNKIDRL 106 (161)
Q Consensus 78 ~~~~~~~~~-~~~~~~~~p--~ilv~NK~Dl~ 106 (161)
.+-....-| ++++..+.. .|++++|-|+.
T Consensus 106 ~TLnSi~~WY~QAr~~NktAiPilvGTKyD~f 137 (205)
T KOG1673|consen 106 STLNSIKEWYRQARGLNKTAIPILVGTKYDLF 137 (205)
T ss_pred HHHHHHHHHHHHHhccCCccceEEeccchHhh
Confidence 544333333 444444433 37899999975
No 296
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.19 E-value=4.1e-06 Score=60.86 Aligned_cols=54 Identities=17% Similarity=0.150 Sum_probs=41.8
Q ss_pred hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 54 FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 54 ~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+.......++.+|++++|+|+.++...+...+...+...++|+++|+||+|+..
T Consensus 2 ~~~~~~~i~~~aD~vl~V~D~~~~~~~~~~~l~~~~~~~~~p~iiv~NK~Dl~~ 55 (156)
T cd01859 2 WKRLVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVP 55 (156)
T ss_pred HHHHHHHHHhhCCEEEEEeeCCCCcccCCHHHHHHHHhCCCcEEEEEEhHHhCC
Confidence 345677788889999999999876655555555555556899999999999864
No 297
>KOG0052|consensus
Probab=98.17 E-value=6.8e-07 Score=73.77 Aligned_cols=97 Identities=29% Similarity=0.424 Sum_probs=72.7
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC-------C
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG-------I 78 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~-------~ 78 (161)
+|++|+++.|+++|++++..... +. ...+.++++|.|||.+|...+....+.+|++++.+.+..| .
T Consensus 54 a~~~dk~~ae~~r~i~I~~~l~~--~~-----t~k~~i~iid~pgh~d~~k~mitg~sqaD~avliva~~~gefEagisk 126 (391)
T KOG0052|consen 54 AWVLDKLKAERERGITIDIALWK--FE-----TSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 126 (391)
T ss_pred eeeechhhhccccceEEEEEeec--cc-----ceeEEEEEecCCCCCceeeeEEeeEeeeceeEEEEeeeccceeeeccc
Confidence 47899999999999885533222 22 5588999999999999999999999999999998887322 1
Q ss_pred ChhHHHHHHHHHHcCC-CcEEEEECCcchhhh
Q psy2609 79 CAQTQVALKQAWLEKI-QPILVLNKIDRLILE 109 (161)
Q Consensus 79 ~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~~~ 109 (161)
..|++++.-+....++ ++++.+||+|.....
T Consensus 127 ngqt~ehalla~tlgv~qliv~v~k~D~~~~~ 158 (391)
T KOG0052|consen 127 NGQTREHALLAFTLGVKQLIVGVNKMDSTEPP 158 (391)
T ss_pred cchhhhhhhhhccccceeeeEEeecccccCCC
Confidence 3666666555555554 557889999976543
No 298
>TIGR02836 spore_IV_A stage IV sporulation protein A. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage IV sporulation protein A. It acts in the mother cell compartment and plays a role in spore coat morphogenesis.
Probab=98.10 E-value=8.5e-06 Score=68.46 Aligned_cols=67 Identities=15% Similarity=0.217 Sum_probs=51.2
Q ss_pred CCceeEEEEeCCCchh-------------------------hHHH----HHHHHH-hcCEEEEEE-eCC------CCCCh
Q psy2609 38 PEEYLINLIDSPGHVD-------------------------FSSE----VSTAVR-LCDGTIIVV-DCV------EGICA 80 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~-------------------------~~~~----~~~~l~-~~d~~ilVv-d~~------~~~~~ 80 (161)
+-..++.++||+|+.. |... +...+. .++.+|+|. |++ ++...
T Consensus 88 ~~~~~VrlIDcvG~~v~GalG~~r~~k~RmV~TPW~d~~IPF~~AAeiGT~kVI~dhstIgivVtTDgsi~dI~Re~y~~ 167 (492)
T TIGR02836 88 GTKFKVRLVDCVGYTVKGALGYMEEDKPRMVSTPWYDYEIPFEEAAEIGTRKVIQEHSTIGVVVTTDGTITDIPREDYVE 167 (492)
T ss_pred CCcccEEEEECCCcccCCCccceeccccccccCCcccccCchhhhhhhhHHHHHHhcCcEEEEEEcCCCccccccccchH
Confidence 3357899999999732 1111 566676 789999998 875 34456
Q ss_pred hHHHHHHHHHHcCCCcEEEEECCc
Q psy2609 81 QTQVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 81 ~~~~~~~~~~~~~~p~ilv~NK~D 104 (161)
..+..+..++..++|+++++||+|
T Consensus 168 aEe~~i~eLk~~~kPfiivlN~~d 191 (492)
T TIGR02836 168 AEERVIEELKELNKPFIILLNSTH 191 (492)
T ss_pred HHHHHHHHHHhcCCCEEEEEECcC
Confidence 667778888899999999999999
No 299
>KOG2486|consensus
Probab=98.09 E-value=1.2e-05 Score=64.09 Aligned_cols=100 Identities=15% Similarity=0.077 Sum_probs=71.4
Q ss_pred ccccccccCCchhHHHcCCccc-----cceEEEEeecCCCCCCceeEEEEeCCCc----------hhhHHHHHHHHHhcC
Q psy2609 2 LCMVSSYMDSRKDEQERGITMK-----SSSISLYYKDNKDTPEEYLINLIDSPGH----------VDFSSEVSTAVRLCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~-----~~~~~~~~~~~~~~~~~~~i~iiDTpG~----------~~~~~~~~~~l~~~d 66 (161)
|.||+.++|..-.-....-+.+ +..+..... +..+.++|.||+ +++...+..|+.+-+
T Consensus 146 NVGKSSLln~~~r~k~~~~t~k~K~g~Tq~in~f~v-------~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~Y~leR~ 218 (320)
T KOG2486|consen 146 NVGKSSLLNDLVRVKNIADTSKSKNGKTQAINHFHV-------GKSWYEVDLPGYGRAGYGFELPADWDKFTKSYLLERE 218 (320)
T ss_pred cccHHHHHhhhhhhhhhhhhcCCCCccceeeeeeec-------cceEEEEecCCcccccCCccCcchHhHhHHHHHHhhh
Confidence 6788888866543332222211 112222222 458999999994 356777888876644
Q ss_pred ---EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 67 ---GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 67 ---~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.+++|+..++.+.+...+.++...++|+.+|.||||....
T Consensus 219 nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~ 263 (320)
T KOG2486|consen 219 NLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKK 263 (320)
T ss_pred hhheeeeeeeccCCCCCCChHHHHHHhhcCCCeEEeeehhhhhhh
Confidence 677889999999999999999999999999999999998653
No 300
>KOG1532|consensus
Probab=98.08 E-value=4.1e-06 Score=66.70 Aligned_cols=86 Identities=24% Similarity=0.258 Sum_probs=54.4
Q ss_pred CceeEEEEeCCCchhhH------HHHHHHHHh--cCEEEEEEeCCCCCChhHH-----HHHHHHHHcCCCcEEEEECCcc
Q psy2609 39 EEYLINLIDSPGHVDFS------SEVSTAVRL--CDGTIIVVDCVEGICAQTQ-----VALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~------~~~~~~l~~--~d~~ilVvd~~~~~~~~~~-----~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
+.+++.+|||||+-... .....++.. --++++|+|.-....+.+. .....+.+.++|.|+|.||+|+
T Consensus 114 ~~~~~~liDTPGQIE~FtWSAsGsIIte~lass~ptvv~YvvDt~rs~~p~tFMSNMlYAcSilyktklp~ivvfNK~Dv 193 (366)
T KOG1532|consen 114 EEFDYVLIDTPGQIEAFTWSASGSIITETLASSFPTVVVYVVDTPRSTSPTTFMSNMLYACSILYKTKLPFIVVFNKTDV 193 (366)
T ss_pred cccCEEEEcCCCceEEEEecCCccchHhhHhhcCCeEEEEEecCCcCCCchhHHHHHHHHHHHHHhccCCeEEEEecccc
Confidence 34789999999985421 122233322 2377789997654444332 2234556789999999999999
Q ss_pred hhhhhcCChHHHHHhHHHH
Q psy2609 106 LILEMKLSPLDIYVHLSQL 124 (161)
Q Consensus 106 ~~~~~~~~~~~~~~~l~~~ 124 (161)
.+.++..+.++.+..++..
T Consensus 194 ~d~~fa~eWm~DfE~FqeA 212 (366)
T KOG1532|consen 194 SDSEFALEWMTDFEAFQEA 212 (366)
T ss_pred cccHHHHHHHHHHHHHHHH
Confidence 8877654555555544443
No 301
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=98.07 E-value=1.3e-05 Score=62.74 Aligned_cols=67 Identities=21% Similarity=0.167 Sum_probs=37.4
Q ss_pred eEEEEeCCCchhhHHHHHHHH--------HhcCEEEEEEeCCCCCChhHHH-----HHHHHHHcCCCcEEEEECCcchhh
Q psy2609 42 LINLIDSPGHVDFSSEVSTAV--------RLCDGTIIVVDCVEGICAQTQV-----ALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~~~~~l--------~~~d~~ilVvd~~~~~~~~~~~-----~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.++|||||.++...+...- ...=++++++|+..-..+.... ......+.++|.|.|+||+|+.+.
T Consensus 92 ~y~l~DtPGQiElf~~~~~~~~i~~~L~~~~~~~~v~LvD~~~~~~~~~f~s~~L~s~s~~~~~~lP~vnvlsK~Dl~~~ 171 (238)
T PF03029_consen 92 DYLLFDTPGQIELFTHSDSGRKIVERLQKNGRLVVVFLVDSSFCSDPSKFVSSLLLSLSIMLRLELPHVNVLSKIDLLSK 171 (238)
T ss_dssp SEEEEE--SSHHHHHHSHHHHHHHHTSSS----EEEEEE-GGG-SSHHHHHHHHHHHHHHHHHHTSEEEEEE--GGGS-H
T ss_pred cEEEEeCCCCEEEEEechhHHHHHHHHhhhcceEEEEEEecccccChhhHHHHHHHHHHHHhhCCCCEEEeeeccCcccc
Confidence 799999999988655433333 3345889999987433322211 112233468999999999999873
No 302
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.06 E-value=4.6e-05 Score=60.12 Aligned_cols=100 Identities=17% Similarity=0.065 Sum_probs=58.6
Q ss_pred ccccccccCCchhHHHc------CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH------H----HHHHHHH--
Q psy2609 2 LCMVSSYMDSRKDEQER------GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS------S----EVSTAVR-- 63 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~------giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~------~----~~~~~l~-- 63 (161)
++||+++++.+-.+... +.|.........+. +.++.+|||||..+.. . .+..++.
T Consensus 41 GvGKSSliNaLlg~~~~~v~~~~~~T~~~~~~~~~~~-------g~~i~vIDTPGl~~~~~~~~~~~~~~~~I~~~l~~~ 113 (249)
T cd01853 41 GVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVD-------GFKLNIIDTPGLLESVMDQRVNRKILSSIKRYLKKK 113 (249)
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-------CeEEEEEECCCcCcchhhHHHHHHHHHHHHHHHhcc
Confidence 58999998776655421 23333222222222 6789999999986542 1 1233343
Q ss_pred hcCEEEEEEeCCC-CCChhHHHHHHHHHH-cC----CCcEEEEECCcchhh
Q psy2609 64 LCDGTIIVVDCVE-GICAQTQVALKQAWL-EK----IQPILVLNKIDRLIL 108 (161)
Q Consensus 64 ~~d~~ilVvd~~~-~~~~~~~~~~~~~~~-~~----~p~ilv~NK~Dl~~~ 108 (161)
..+++++|...+. .....+..+++.+.. .+ .++++|.||+|....
T Consensus 114 ~idvIL~V~rlD~~r~~~~d~~llk~I~e~fG~~i~~~~ivV~T~~d~~~p 164 (249)
T cd01853 114 TPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPP 164 (249)
T ss_pred CCCEEEEEEcCCCCCCCHHHHHHHHHHHHHhChhhHhCEEEEEeCCccCCC
Confidence 4678888875553 233444445544433 22 468999999998643
No 303
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=98.02 E-value=1.1e-05 Score=64.35 Aligned_cols=57 Identities=25% Similarity=0.329 Sum_probs=44.5
Q ss_pred CCch-hhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 49 PGHV-DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 49 pG~~-~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
|||. +...+....+..+|++++|+|+..+.......+.+.+ .+.|+|+|+||+|+..
T Consensus 5 pgHm~k~~~~~~~~l~~aDvVl~V~Dar~p~~~~~~~i~~~l--~~kp~IiVlNK~DL~~ 62 (276)
T TIGR03596 5 PGHMAKARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIR--GNKPRLIVLNKADLAD 62 (276)
T ss_pred hHHHHHHHHHHHHHHhhCCEEEEEEeCCCCCCCCChhHHHHH--CCCCEEEEEEccccCC
Confidence 7874 5677899999999999999999876655444444443 3689999999999964
No 304
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=97.98 E-value=1.4e-05 Score=59.12 Aligned_cols=57 Identities=26% Similarity=0.290 Sum_probs=43.8
Q ss_pred CCc-hhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 49 PGH-VDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 49 pG~-~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
||| .+...++...+..+|.+++|+|+..+.......+...+ .++|+++|+||+|+..
T Consensus 3 ~~~~~~~~~~~~~~i~~aD~il~v~D~~~~~~~~~~~i~~~~--~~k~~ilVlNK~Dl~~ 60 (171)
T cd01856 3 PGHMAKALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKIL--GNKPRIIVLNKADLAD 60 (171)
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeccCccCcCChhhHhHh--cCCCEEEEEehhhcCC
Confidence 665 56778899999999999999999876554444444433 3689999999999964
No 305
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.93 E-value=4.1e-06 Score=60.99 Aligned_cols=77 Identities=17% Similarity=0.003 Sum_probs=44.8
Q ss_pred CEEEEEEeCCCCCChhHHHHH-HHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhhhchhhhhhh
Q psy2609 66 DGTIIVVDCVEGICAQTQVAL-KQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFASQVMDE 143 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~~-~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (161)
|.+++|+|+..+.......+. ..+...++|+|+|+||+|+...+........+.+.. ....+++++....+.+.+.+
T Consensus 1 Dvvl~VvD~~~p~~~~~~~i~~~~~~~~~~p~IiVlNK~Dl~~~~~~~~~~~~~~~~~-~~~ii~vSa~~~~gi~~L~~ 78 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSY-PTIPFKISATNGQGIEKKES 78 (155)
T ss_pred CEEEEEEeccCCccccCHHHHHHHHhcCCCCEEEEEechhcCCHHHHHHHHHHHHhhC-CceEEEEeccCCcChhhHHH
Confidence 789999999876655544444 344556899999999999964331100111111110 11234566666666666554
No 306
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=97.86 E-value=1e-05 Score=65.71 Aligned_cols=68 Identities=26% Similarity=0.329 Sum_probs=44.3
Q ss_pred ccccccccCCchhHH----HcC-CccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ----ERG-ITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~g-iti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
++||++++..+..-. .+- .|......-+.|+ +.+|+++|+||.-. ..+++.+..+.||.++
T Consensus 73 svGKStLL~~LTnt~seva~y~FTTl~~VPG~l~Y~-------ga~IQild~Pgii~gas~g~grG~~vlsv~R~ADlIi 145 (365)
T COG1163 73 SVGKSTLLNKLTNTKSEVADYPFTTLEPVPGMLEYK-------GAQIQLLDLPGIIEGASSGRGRGRQVLSVARNADLII 145 (365)
T ss_pred CccHHHHHHHHhCCCccccccCceecccccceEeec-------CceEEEEcCcccccCcccCCCCcceeeeeeccCCEEE
Confidence 578888876553111 111 1222222334444 78999999999632 2456888899999999
Q ss_pred EEEeCCC
Q psy2609 70 IVVDCVE 76 (161)
Q Consensus 70 lVvd~~~ 76 (161)
+|+|+..
T Consensus 146 iVld~~~ 152 (365)
T COG1163 146 IVLDVFE 152 (365)
T ss_pred EEEecCC
Confidence 9999873
No 307
>PF00350 Dynamin_N: Dynamin family; InterPro: IPR001401 Membrane transport between compartments in eukaryotic cells requires proteins that allow the budding and scission of nascent cargo vesicles from one compartment and their targeting and fusion with another. Dynamins are large GTPases that belong to a protein superfamily [] that, in eukaryotic cells, includes classical dynamins, dynamin-like proteins, OPA1, Mx proteins, mitofusins and guanylate-binding proteins/atlastins [, , , ], and are involved in the scission of a wide range of vesicles and organelles. They play a role in many processes including budding of transport vesicles, division of organelles, cytokinesis and pathogen resistance. The minimal distinguishing architectural features that are common to all dynamins and are distinct from other GTPases are the structure of the large GTPase domain (300 amino acids) and the presence of two additional domains; the middle domain and the GTPase effector domain (GED), which are involved in oligomerization and regulation of the GTPase activity. This entry represents the GTPase domain, containing the GTP-binding motifs that are needed for guanine-nucleotide binding and hydrolysis. The conservation of these motifs is absolute except for the the final motif in guanylate-binding proteins. The GTPase catalytic activity can be stimulated by oligomerisation of the protein, which is mediated by interactions between the GTPase domain, the middle domain and the GED.; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 1JWY_B 1JX2_B 3ZVR_A 2AKA_B 3L43_B 2X2F_D 2X2E_D 3SNH_A 3ZYS_D 3ZYC_D ....
Probab=97.85 E-value=3.6e-05 Score=56.14 Aligned_cols=64 Identities=28% Similarity=0.304 Sum_probs=46.0
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH-HHcCCCcEEEEECC
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQA-WLEKIQPILVLNKI 103 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~-~~~~~p~ilv~NK~ 103 (161)
...+.|+||||... ....+..++..+|++|+|+++.......+...+... ......+++|.||+
T Consensus 100 ~~~~~lvDtPG~~~~~~~~~~~~~~~~~~~d~vi~V~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nk~ 168 (168)
T PF00350_consen 100 LRNLTLVDTPGLNSTNSEHTEITEEYLPKADVVIFVVDANQDLTESDMEFLKQMLDPDKSRTIFVLNKA 168 (168)
T ss_dssp SCSEEEEEEEEBHSSHTTTSHHHHHHHSTTEEEEEEEETTSTGGGHHHHHHHHHHTTTCSSEEEEEE-G
T ss_pred ccceEEEeCCccccchhhhHHHHHHhhccCCEEEEEeccCcccchHHHHHHHHHhcCCCCeEEEEEcCC
Confidence 35699999999853 235688889999999999999987765555444433 33445567888984
No 308
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=97.84 E-value=2.6e-05 Score=62.60 Aligned_cols=57 Identities=26% Similarity=0.322 Sum_probs=44.1
Q ss_pred CCch-hhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 49 PGHV-DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 49 pG~~-~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
|||. +-..+....+..+|++++|+|+..+.......+..... +.|+++|+||+|+..
T Consensus 8 pgHm~k~~~~l~~~l~~aDvIL~VvDar~p~~~~~~~l~~~~~--~kp~iiVlNK~DL~~ 65 (287)
T PRK09563 8 PGHMAKARREIKENLKLVDVVIEVLDARIPLSSENPMIDKIIG--NKPRLLILNKSDLAD 65 (287)
T ss_pred HHHHHHHHHHHHHHhhhCCEEEEEEECCCCCCCCChhHHHHhC--CCCEEEEEEchhcCC
Confidence 7874 45677899999999999999998766554444444332 789999999999964
No 309
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.84 E-value=2.2e-05 Score=58.85 Aligned_cols=57 Identities=23% Similarity=0.018 Sum_probs=42.2
Q ss_pred CCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 49 PGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 49 pG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
|.+..|...+..+++.+|++++|+|+.+....+...+.. ...++|+++|+||+|+..
T Consensus 19 ~~~~~~~~~l~~~~~~ad~il~VvD~~~~~~~~~~~l~~--~~~~~~~ilV~NK~Dl~~ 75 (190)
T cd01855 19 PDEDFILNLLSSISPKKALVVHVVDIFDFPGSLIPRLRL--FGGNNPVILVGNKIDLLP 75 (190)
T ss_pred ChHHHHHHHHHhcccCCcEEEEEEECccCCCccchhHHH--hcCCCcEEEEEEchhcCC
Confidence 444446888999999999999999998654433333322 235789999999999964
No 310
>KOG4423|consensus
Probab=97.81 E-value=6.8e-07 Score=67.20 Aligned_cols=92 Identities=18% Similarity=0.174 Sum_probs=63.9
Q ss_pred hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHH--
Q psy2609 13 KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAW-- 90 (161)
Q Consensus 13 ~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~-- 90 (161)
..-++..|.++....-+.|+. ..-+++.+||.+|+++|..++.-+++.+.++.+|+|.+......-...|.+-.
T Consensus 51 s~~yRAtIgvdfalkVl~wdd----~t~vRlqLwdIagQerfg~mtrVyykea~~~~iVfdvt~s~tfe~~skwkqdlds 126 (229)
T KOG4423|consen 51 SYHYRATIGVDFALKVLQWDD----KTIVRLQLWDIAGQERFGNMTRVYYKEAHGAFIVFDVTRSLTFEPVSKWKQDLDS 126 (229)
T ss_pred HHHHHHHHhHHHHHHHhccCh----HHHHHHHHhcchhhhhhcceEEEEecCCcceEEEEEccccccccHHHHHHHhccC
Confidence 334444555555555555652 22467999999999999999999999999999999998765443333332111
Q ss_pred ------HcCCCcEEEEECCcchhh
Q psy2609 91 ------LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 91 ------~~~~p~ilv~NK~Dl~~~ 108 (161)
...+|+++..||||....
T Consensus 127 k~qLpng~Pv~~vllankCd~e~~ 150 (229)
T KOG4423|consen 127 KLQLPNGTPVPCVLLANKCDQEKS 150 (229)
T ss_pred cccCCCCCcchheeccchhccChH
Confidence 124567899999998653
No 311
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=97.79 E-value=2.6e-05 Score=58.17 Aligned_cols=44 Identities=25% Similarity=0.206 Sum_probs=34.1
Q ss_pred CEEEEEEeCCCCCChhHHHHHHH--HHHcCCCcEEEEECCcchhhh
Q psy2609 66 DGTIIVVDCVEGICAQTQVALKQ--AWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~~~~--~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
|++++|+|+..+.......+.+. +...+.|+|+|+||+|+...+
T Consensus 1 DvVl~VvDar~p~~~~~~~i~~~~~l~~~~kp~IlVlNK~DL~~~~ 46 (172)
T cd04178 1 DVILEVLDARDPLGCRCPQVEEAVLQAGGNKKLVLVLNKIDLVPKE 46 (172)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHhccCCCCEEEEEehhhcCCHH
Confidence 78999999988776655566555 334578999999999997544
No 312
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=97.73 E-value=0.00018 Score=53.25 Aligned_cols=66 Identities=20% Similarity=0.163 Sum_probs=50.3
Q ss_pred CceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+.++++||||.. .......+..+|.+++++..+..........++.+...++|+.+|+||+|..
T Consensus 91 ~~~d~viiDtpp~~--~~~~~~~l~~aD~vliv~~~~~~~~~~~~~~~~~l~~~~~~~~vV~N~~~~~ 156 (179)
T cd03110 91 EGAELIIIDGPPGI--GCPVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLN 156 (179)
T ss_pred cCCCEEEEECcCCC--cHHHHHHHHcCCEEEEEecCCcccHHHHHHHHHHHHHcCCCEEEEEeCCCCC
Confidence 37889999999753 2355677889999999999875433444566666777788889999999964
No 313
>TIGR00991 3a0901s02IAP34 GTP-binding protein (Chloroplast Envelope Protein Translocase).
Probab=97.70 E-value=0.00043 Score=56.26 Aligned_cols=98 Identities=14% Similarity=0.095 Sum_probs=55.9
Q ss_pred ccccccccCCchhHHHc------CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH---HHHHHHHH------hcC
Q psy2609 2 LCMVSSYMDSRKDEQER------GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS---SEVSTAVR------LCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~------giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~---~~~~~~l~------~~d 66 (161)
++||+++++.+-.++.. +.+.........+ .+.++.+|||||..+.. ......++ ..|
T Consensus 48 GVGKSSliNsIlG~~v~~vs~f~s~t~~~~~~~~~~-------~G~~l~VIDTPGL~d~~~~~e~~~~~ik~~l~~~g~D 120 (313)
T TIGR00991 48 GVGKSSTVNSIIGERIATVSAFQSEGLRPMMVSRTR-------AGFTLNIIDTPGLIEGGYINDQAVNIIKRFLLGKTID 120 (313)
T ss_pred CCCHHHHHHHHhCCCcccccCCCCcceeEEEEEEEE-------CCeEEEEEECCCCCchHHHHHHHHHHHHHHhhcCCCC
Confidence 57899998776655421 1111111111112 26799999999987532 22223333 478
Q ss_pred EEEEEEeCCC-CCChhHHHHHHHHHH-----cCCCcEEEEECCcch
Q psy2609 67 GTIIVVDCVE-GICAQTQVALKQAWL-----EKIQPILVLNKIDRL 106 (161)
Q Consensus 67 ~~ilVvd~~~-~~~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~ 106 (161)
++++|...+. .....+..+++.+.. .-.+.|++.+++|..
T Consensus 121 vVLyV~rLD~~R~~~~DkqlLk~Iqe~FG~~iw~~~IVVfTh~d~~ 166 (313)
T TIGR00991 121 VLLYVDRLDAYRVDTLDGQVIRAITDSFGKDIWRKSLVVLTHAQFS 166 (313)
T ss_pred EEEEEeccCcccCCHHHHHHHHHHHHHhhhhhhccEEEEEECCccC
Confidence 9999965442 234344444443332 125679999999976
No 314
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=97.67 E-value=3.7e-05 Score=60.45 Aligned_cols=56 Identities=30% Similarity=0.229 Sum_probs=41.8
Q ss_pred hhhHHHHHHHHHhcCEEEEEEeCCCCC-ChhH-HHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 52 VDFSSEVSTAVRLCDGTIIVVDCVEGI-CAQT-QVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 52 ~~~~~~~~~~l~~~d~~ilVvd~~~~~-~~~~-~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+++...++.+++++|++++|+|+++.. +... ..++..+...++|+++|+||+||..
T Consensus 24 eR~~~L~r~~~~n~D~viiV~d~~~p~~s~~~l~r~l~~~~~~~i~~vIV~NK~DL~~ 81 (245)
T TIGR00157 24 ERKNELTRPIVANIDQIVIVSSAVLPELSLNQLDRFLVVAEAQNIEPIIVLNKIDLLD 81 (245)
T ss_pred cccceEECcccccCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECcccCC
Confidence 567777788999999999999998543 3222 2333444457899999999999964
No 315
>KOG3883|consensus
Probab=97.66 E-value=0.00014 Score=53.27 Aligned_cols=70 Identities=17% Similarity=0.126 Sum_probs=50.5
Q ss_pred CCceeEEEEeCCCchhh-HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HHH----HcCCCcEEEEECCcchh
Q psy2609 38 PEEYLINLIDSPGHVDF-SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK-QAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~-~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~-~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
+-.-++.|.||+|.... ..+-..|+..+|++++|+|..+.-+.+..+.+. .+. +..+|+++.+||+|+..
T Consensus 57 garE~l~lyDTaGlq~~~~eLprhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~ 132 (198)
T KOG3883|consen 57 GAREQLRLYDTAGLQGGQQELPRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAE 132 (198)
T ss_pred ChhheEEEeecccccCchhhhhHhHhccCceEEEEecCCCHHHHHHHHHHHHHHhhccccccccEEEEechhhccc
Confidence 44558999999998777 445667788899999999988654444433332 121 24689999999999953
No 316
>KOG1707|consensus
Probab=97.66 E-value=0.00012 Score=63.34 Aligned_cols=104 Identities=18% Similarity=0.091 Sum_probs=64.6
Q ss_pred ccccccc-CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC--
Q psy2609 3 CMVSSYM-DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC-- 79 (161)
Q Consensus 3 ~g~~~~~-D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~-- 79 (161)
+|||.++ .-..+|.-..+....-.+.+.-.. +.+.....++||+.-.+-.......++.||++++|+++++..+
T Consensus 20 ~GKtSLImSL~~eef~~~VP~rl~~i~IPadv---tPe~vpt~ivD~ss~~~~~~~l~~EirkA~vi~lvyavd~~~T~D 96 (625)
T KOG1707|consen 20 VGKTSLIMSLLEEEFVDAVPRRLPRILIPADV---TPENVPTSIVDTSSDSDDRLCLRKEIRKADVICLVYAVDDESTVD 96 (625)
T ss_pred ccHHHHHHHHHhhhccccccccCCccccCCcc---CcCcCceEEEecccccchhHHHHHHHhhcCEEEEEEecCChHHhh
Confidence 5777765 222333333333333333333221 1445679999999877767778889999999999999885332
Q ss_pred hhHHHHHHHHHH-----cCCCcEEEEECCcchhhh
Q psy2609 80 AQTQVALKQAWL-----EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 80 ~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~~ 109 (161)
.-...++-..+. .++|+|+|+||+|+....
T Consensus 97 ~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~ 131 (625)
T KOG1707|consen 97 RISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNE 131 (625)
T ss_pred hhhhhhhhhhhcccCCCccCCEEEEeeccCCcccc
Confidence 112222233322 479999999999986543
No 317
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=97.63 E-value=6.1e-05 Score=60.26 Aligned_cols=74 Identities=18% Similarity=0.198 Sum_probs=49.8
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCC-------CC---CceeEEEEeCCCchh-------hHHHHH
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKD-------TP---EEYLINLIDSPGHVD-------FSSEVS 59 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~-------~~---~~~~i~iiDTpG~~~-------~~~~~~ 59 (161)
|+|||++++.+..... ++.|++.....+.+..... .. -..++.++||||..+ +.....
T Consensus 8 N~GKSTLfn~Lt~~~~~~~n~pftTi~p~~g~v~v~d~r~~~l~~~~~~~k~~~~~i~lvD~pGl~~~a~~~~glg~~fL 87 (274)
T cd01900 8 NVGKSTLFNALTKAGAEAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNKFL 87 (274)
T ss_pred CCcHHHHHHHHhCCCCccccccccchhceeeeEEeccchhhhHHHHhCCceeeeeEEEEEECCCcCCCCchhhHHHHHHH
Confidence 8999999877654333 6778777666665542100 00 013699999999532 344566
Q ss_pred HHHHhcCEEEEEEeCC
Q psy2609 60 TAVRLCDGTIIVVDCV 75 (161)
Q Consensus 60 ~~l~~~d~~ilVvd~~ 75 (161)
..++.+|++++|+|+.
T Consensus 88 ~~i~~~D~li~VV~~f 103 (274)
T cd01900 88 SHIREVDAIAHVVRCF 103 (274)
T ss_pred HHHHhCCEEEEEEeCc
Confidence 7788999999999974
No 318
>COG3596 Predicted GTPase [General function prediction only]
Probab=97.62 E-value=0.00018 Score=57.38 Aligned_cols=69 Identities=14% Similarity=0.129 Sum_probs=53.4
Q ss_pred ceeEEEEeCCCchh-------hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 40 EYLINLIDSPGHVD-------FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
...++||||||.++ +......++...|.+++++++.+.--..++..++.... .+.|+++++|-+|....
T Consensus 86 ~~~l~lwDtPG~gdg~~~D~~~r~~~~d~l~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p 163 (296)
T COG3596 86 GENLVLWDTPGLGDGKDKDAEHRQLYRDYLPKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEP 163 (296)
T ss_pred ccceEEecCCCcccchhhhHHHHHHHHHHhhhccEEEEeccCCCccccCCHHHHHHHHHhccCceeEEEEehhhhhcc
Confidence 46899999999876 67778899999999999999986544445555554433 35799999999998653
No 319
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.61 E-value=2.9e-05 Score=55.05 Aligned_cols=90 Identities=17% Similarity=0.127 Sum_probs=58.1
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCc----hhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH----VDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~----~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
-|||++++..+..+.. .-.+..-+.|+. + -.|||||- .++.......+..+|++++|-.++++
T Consensus 11 gcGKTtL~q~L~G~~~----lykKTQAve~~d-----~----~~IDTPGEy~~~~~~Y~aL~tt~~dadvi~~v~~and~ 77 (148)
T COG4917 11 GCGKTTLFQSLYGNDT----LYKKTQAVEFND-----K----GDIDTPGEYFEHPRWYHALITTLQDADVIIYVHAANDP 77 (148)
T ss_pred ccCchhHHHHhhcchh----hhcccceeeccC-----c----cccCCchhhhhhhHHHHHHHHHhhccceeeeeecccCc
Confidence 3789998877766652 212223345541 1 26899993 34555566677789999999999865
Q ss_pred CChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 78 ICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
.+.-. ...+.-...|+|-+++|.|++.
T Consensus 78 ~s~f~---p~f~~~~~k~vIgvVTK~DLae 104 (148)
T COG4917 78 ESRFP---PGFLDIGVKKVIGVVTKADLAE 104 (148)
T ss_pred cccCC---cccccccccceEEEEecccccc
Confidence 43222 1223334567999999999984
No 320
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=97.59 E-value=0.00049 Score=56.38 Aligned_cols=100 Identities=15% Similarity=0.050 Sum_probs=58.7
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
||||++++.....-+. +=.|+..+.-.+.. .....+++-|.||.-. +.-.-...+..+.+.+
T Consensus 169 NaGKSTlls~vS~AkPKIadYpFTTL~PnLGvV~~------~~~~sfv~ADIPGLIEGAs~G~GLG~~FLrHIERt~vL~ 242 (369)
T COG0536 169 NAGKSTLLSAVSAAKPKIADYPFTTLVPNLGVVRV------DGGESFVVADIPGLIEGASEGVGLGLRFLRHIERTRVLL 242 (369)
T ss_pred CCcHHHHHHHHhhcCCcccCCccccccCcccEEEe------cCCCcEEEecCcccccccccCCCccHHHHHHHHhhheeE
Confidence 8999999866543221 11222222222222 2255799999999632 2223445677788999
Q ss_pred EEEeCCCCC----ChhHHHHHHHHHH-----cCCCcEEEEECCcchh
Q psy2609 70 IVVDCVEGI----CAQTQVALKQAWL-----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 70 lVvd~~~~~----~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~ 107 (161)
.|+|++..- ......+...+.+ .++|.++|.||+|++.
T Consensus 243 hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~ 289 (369)
T COG0536 243 HVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPL 289 (369)
T ss_pred EEEecCcccCCCHHHHHHHHHHHHHHhhHHhccCceEEEEeccCCCc
Confidence 999997322 2222333333322 4789999999999653
No 321
>PRK12289 GTPase RsgA; Reviewed
Probab=97.58 E-value=3.1e-05 Score=64.06 Aligned_cols=53 Identities=21% Similarity=0.077 Sum_probs=37.9
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCC-Chh-HHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGI-CAQ-TQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~-~~~-~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
...+.++.++|.+++|+|+.+.. ... ...++..+...++|+++|+||+||...
T Consensus 81 ~L~R~~~aNvD~vLlV~d~~~p~~~~~~LdR~L~~a~~~~ip~ILVlNK~DLv~~ 135 (352)
T PRK12289 81 ELDRPPVANADQILLVFALAEPPLDPWQLSRFLVKAESTGLEIVLCLNKADLVSP 135 (352)
T ss_pred ceechhhhcCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEchhcCCh
Confidence 34566789999999999997542 332 133334444578999999999999743
No 322
>KOG0082|consensus
Probab=97.48 E-value=0.00086 Score=55.35 Aligned_cols=84 Identities=15% Similarity=0.073 Sum_probs=59.4
Q ss_pred CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC--CC---------hhHHHHHH
Q psy2609 19 GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG--IC---------AQTQVALK 87 (161)
Q Consensus 19 giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~--~~---------~~~~~~~~ 87 (161)
--|.......|.+. +..+-++|.+||..-++.|...+.+++++|||++.++- +. .....+..
T Consensus 180 ~~T~GI~e~~F~~k-------~~~f~~~DvGGQRseRrKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~ 252 (354)
T KOG0082|consen 180 VPTTGIVEVEFTIK-------GLKFRMFDVGGQRSERKKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFE 252 (354)
T ss_pred cCcCCeeEEEEEeC-------CCceEEEeCCCcHHHhhhHHHhhcCCCEEEEEEehhhhhhhcccccchhHHHHHHHHHH
Confidence 33444555666666 78999999999988888899999999999999998621 11 11122222
Q ss_pred HHHH----cCCCcEEEEECCcchhhh
Q psy2609 88 QAWL----EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 88 ~~~~----~~~p~ilv~NK~Dl~~~~ 109 (161)
.+.. .+.++||++||.||....
T Consensus 253 sI~n~~~F~~tsiiLFLNK~DLFeEK 278 (354)
T KOG0082|consen 253 SICNNKWFANTSIILFLNKKDLFEEK 278 (354)
T ss_pred HHhcCcccccCcEEEEeecHHHHHHH
Confidence 2222 368899999999998654
No 323
>PTZ00258 GTP-binding protein; Provisional
Probab=97.46 E-value=0.00014 Score=60.89 Aligned_cols=74 Identities=16% Similarity=0.170 Sum_probs=50.1
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCC----------CCCCceeEEEEeCCCchh-------hHHHHH
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNK----------DTPEEYLINLIDSPGHVD-------FSSEVS 59 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~----------~~~~~~~i~iiDTpG~~~-------~~~~~~ 59 (161)
|+|||++++.+...+ -++.|++.....+.+.... ...-..++.|+||||... +.....
T Consensus 31 NvGKSTLfnaLt~~~~~v~n~pftTi~p~~g~v~~~d~r~~~l~~~~~~~~~~~aqi~lvDtpGLv~ga~~g~gLg~~fL 110 (390)
T PTZ00258 31 NVGKSTTFNALCKQQVPAENFPFCTIDPNTARVNVPDERFDWLCKHFKPKSIVPAQLDITDIAGLVKGASEGEGLGNAFL 110 (390)
T ss_pred CCChHHHHHHHhcCcccccCCCCCcccceEEEEecccchhhHHHHHcCCcccCCCCeEEEECCCcCcCCcchhHHHHHHH
Confidence 899999987774332 2567777666555543110 001134799999999632 445667
Q ss_pred HHHHhcCEEEEEEeCC
Q psy2609 60 TAVRLCDGTIIVVDCV 75 (161)
Q Consensus 60 ~~l~~~d~~ilVvd~~ 75 (161)
..++.+|++++|+|+.
T Consensus 111 ~~Ir~aD~il~VVd~f 126 (390)
T PTZ00258 111 SHIRAVDGIYHVVRAF 126 (390)
T ss_pred HHHHHCCEEEEEEeCC
Confidence 7889999999999984
No 324
>KOG1954|consensus
Probab=97.46 E-value=0.00083 Score=55.83 Aligned_cols=68 Identities=21% Similarity=0.301 Sum_probs=53.8
Q ss_pred eEEEEeCCCch-----------hhHHHHHHHHHhcCEEEEEEeCCC-CCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 42 LINLIDSPGHV-----------DFSSEVSTAVRLCDGTIIVVDCVE-GICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 42 ~i~iiDTpG~~-----------~~~~~~~~~l~~~d~~ilVvd~~~-~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+++|+||||.- +|.....-....+|.+++++|+.. .++.....++..++...=.+=+|+||.|.+..+
T Consensus 148 ~vtiVdtPGILsgeKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~EdkiRVVLNKADqVdtq 227 (532)
T KOG1954|consen 148 SVTIVDTPGILSGEKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHEDKIRVVLNKADQVDTQ 227 (532)
T ss_pred heeeeccCcccccchhcccccCChHHHHHHHHHhccEEEEEechhhccccHHHHHHHHHhhCCcceeEEEeccccccCHH
Confidence 69999999962 366667777888999999999863 566777777777776555666899999998654
No 325
>PRK09601 GTP-binding protein YchF; Reviewed
Probab=97.34 E-value=0.00025 Score=58.86 Aligned_cols=74 Identities=16% Similarity=0.169 Sum_probs=49.4
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCC---------C-CCCceeEEEEeCCCchh-------hHHHHH
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNK---------D-TPEEYLINLIDSPGHVD-------FSSEVS 59 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~---------~-~~~~~~i~iiDTpG~~~-------~~~~~~ 59 (161)
|+|||++++.+...+ -++.|++.....+.+.... + ..-..++.++||||..+ +.....
T Consensus 12 NvGKSTLfnaLt~~~~~v~nypftTi~p~~G~~~v~d~r~~~l~~~~~p~~~~~a~i~lvD~pGL~~~a~~g~glg~~fL 91 (364)
T PRK09601 12 NVGKSTLFNALTKAGAEAANYPFCTIEPNVGVVPVPDPRLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKGEGLGNQFL 91 (364)
T ss_pred CCCHHHHHHHHhCCCCeecccccccccceEEEEEeccccchhhHHhcCCccccCceEEEEECCCCCCCCChHHHHHHHHH
Confidence 899999987665433 3677777665555544210 0 00113699999999632 344566
Q ss_pred HHHHhcCEEEEEEeCC
Q psy2609 60 TAVRLCDGTIIVVDCV 75 (161)
Q Consensus 60 ~~l~~~d~~ilVvd~~ 75 (161)
..++.+|++++|+|+.
T Consensus 92 ~~i~~aD~li~VVd~f 107 (364)
T PRK09601 92 ANIREVDAIVHVVRCF 107 (364)
T ss_pred HHHHhCCEEEEEEeCC
Confidence 7788999999999984
No 326
>PF00735 Septin: Septin; InterPro: IPR000038 Septins constitute a eukaryotic family of guanine nucleotide-binding proteins, most of which polymerise to form filaments []. Members of the family were first identified by genetic screening for Saccharomyces cerevisiae (Baker's yeast) mutants defective in cytokinesis []. Temperature-sensitive mutations in four genes, CDC3, CDC10, CDC11 and CDC12, were found to cause cell-cycle arrest and defects in bud growth and cytokinesis. The protein products of these genes localise at the division plane between mother and daughter cells, indicating a role in mother-daughter separation during cytokinesis []. Members of the family were therefore termed septins to reflect their role in septation and cell division. The identification of septin homologues in higher eukaryotes, which localise to the cleavage furrow in dividing cells, supports an orthologous function in cytokinesis. Septins have since been identified in most eukaryotes, except plants []. Septins are approximately 40-50 kDa in molecular mass, and typically comprise a conserved central core domain (more than 35% sequence identity between mammalian and yeast homologues) flanked by more divergent N- and C-termini. Most septins possess a P-loop motif in their N-terminal domain (which is characteristic of GTP-binding proteins), and a predicted C-terminal coiled-coil domain []. A number of septin interaction partners have been identified in yeast, many of which are components of the budding site selection machinery, kinase cascades or of the ubiquitination pathway. It has been proposed that septins may act as a scaffold that provides an interaction matrix for other proteins [, ]. In mammals, septins have been shown to regulate vesicle dynamics []. Mammalian septins have also been implicated in a variety of other cellular processes, including apoptosis, carcinogenesis and neurodegeneration []. This entry represents a variety of septins and homologous sequences involved in the cell division process.; GO: 0005525 GTP binding, 0007049 cell cycle; PDB: 2QAG_B 3FTQ_D 2QA5_A 2QNR_B 3TW4_A 3T5D_C.
Probab=97.31 E-value=0.00088 Score=53.79 Aligned_cols=71 Identities=20% Similarity=0.260 Sum_probs=45.0
Q ss_pred CCceeEEEEeCCCchhh-------------H-HHHHHHHH-------------hcCEEEEEEeCC-CCCChhHHHHHHHH
Q psy2609 38 PEEYLINLIDSPGHVDF-------------S-SEVSTAVR-------------LCDGTIIVVDCV-EGICAQTQVALKQA 89 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~-------------~-~~~~~~l~-------------~~d~~ilVvd~~-~~~~~~~~~~~~~~ 89 (161)
+-..++.++||||+-+. . ..-..++. ..+++++.++++ .++.+.+...++.+
T Consensus 60 ~~~l~LtiiDTpGfGd~i~n~~~~~~I~~yI~~qf~~~l~eE~~~~R~~~~D~RVH~cLYfI~pt~~~L~~~Di~~mk~L 139 (281)
T PF00735_consen 60 GVKLNLTIIDTPGFGDNIDNSDCWEPIVDYIESQFDSYLEEESKINRPRIEDTRVHACLYFIPPTGHGLKPLDIEFMKRL 139 (281)
T ss_dssp CEEEEEEEEEEC-CSSSSTHCHHHHHHHHHHHHHHHHHHHHHTSSS-TTS----EEEEEEEE-TTSSSS-HHHHHHHHHH
T ss_pred CcceEEEEEeCCCccccccchhhhHHHHHHHHHHHHHHHHHhhcccccCcCCCCcceEEEEEcCCCccchHHHHHHHHHh
Confidence 45678999999996421 1 01111221 147999999986 56777777766655
Q ss_pred HHcCCCcEEEEECCcchhhh
Q psy2609 90 WLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 90 ~~~~~p~ilv~NK~Dl~~~~ 109 (161)
. ..+++|-|+.|.|....+
T Consensus 140 s-~~vNvIPvIaKaD~lt~~ 158 (281)
T PF00735_consen 140 S-KRVNVIPVIAKADTLTPE 158 (281)
T ss_dssp T-TTSEEEEEESTGGGS-HH
T ss_pred c-ccccEEeEEecccccCHH
Confidence 3 468899999999998755
No 327
>KOG3886|consensus
Probab=97.28 E-value=0.001 Score=52.09 Aligned_cols=89 Identities=18% Similarity=0.228 Sum_probs=60.1
Q ss_pred HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHH-----HHHHHHhcCEEEEEEeCCCCCChhH----HHH
Q psy2609 15 EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE-----VSTAVRLCDGTIIVVDCVEGICAQT----QVA 85 (161)
Q Consensus 15 E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~-----~~~~l~~~d~~ilVvd~~~~~~~~~----~~~ 85 (161)
-+..|-|++....++.|-+ +..+++||+.|++.|... -...++++++.++|+|+...--..+ ...
T Consensus 33 ~~rlg~tidveHsh~RflG------nl~LnlwDcGgqe~fmen~~~~q~d~iF~nV~vli~vFDves~e~~~D~~~yqk~ 106 (295)
T KOG3886|consen 33 TRRLGATIDVEHSHVRFLG------NLVLNLWDCGGQEEFMENYLSSQEDNIFRNVQVLIYVFDVESREMEKDFHYYQKC 106 (295)
T ss_pred hhccCCcceeeehhhhhhh------hheeehhccCCcHHHHHHHHhhcchhhheeheeeeeeeeccchhhhhhHHHHHHH
Confidence 3466888887777777753 578999999999876554 3446778999999999974321122 222
Q ss_pred HHHHHH--cCCCcEEEEECCcchhhh
Q psy2609 86 LKQAWL--EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 86 ~~~~~~--~~~p~ilv~NK~Dl~~~~ 109 (161)
++.+.+ ....+++.+.|+|+...+
T Consensus 107 Le~ll~~SP~AkiF~l~hKmDLv~~d 132 (295)
T KOG3886|consen 107 LEALLQNSPEAKIFCLLHKMDLVQED 132 (295)
T ss_pred HHHHHhcCCcceEEEEEeechhcccc
Confidence 232222 244567889999998644
No 328
>PF05049 IIGP: Interferon-inducible GTPase (IIGP); InterPro: IPR007743 Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing [].; GO: 0005525 GTP binding, 0016817 hydrolase activity, acting on acid anhydrides, 0016020 membrane; PDB: 1TPZ_A 1TQD_A 1TQ6_A 1TQ2_B 1TQ4_A.
Probab=97.28 E-value=0.00055 Score=56.99 Aligned_cols=96 Identities=17% Similarity=0.108 Sum_probs=52.3
Q ss_pred cccccccCCchh-------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHH-----HhcCEEEE
Q psy2609 3 CMVSSYMDSRKD-------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAV-----RLCDGTII 70 (161)
Q Consensus 3 ~g~~~~~D~~~~-------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l-----~~~d~~il 70 (161)
+||+++++.+.. .-..|++ .+......|.. .+--.+.+||.||..--.-....|+ ...|.+|+
T Consensus 46 sGKSSfINalrGl~~~d~~aA~tGv~-etT~~~~~Y~~----p~~pnv~lWDlPG~gt~~f~~~~Yl~~~~~~~yD~fii 120 (376)
T PF05049_consen 46 SGKSSFINALRGLGHEDEGAAPTGVV-ETTMEPTPYPH----PKFPNVTLWDLPGIGTPNFPPEEYLKEVKFYRYDFFII 120 (376)
T ss_dssp SSHHHHHHHHTT--TTSTTS--SSSH-SCCTS-EEEE-----SS-TTEEEEEE--GGGSS--HHHHHHHTTGGG-SEEEE
T ss_pred CCHHHHHHHHhCCCCCCcCcCCCCCC-cCCCCCeeCCC----CCCCCCeEEeCCCCCCCCCCHHHHHHHccccccCEEEE
Confidence 789999877642 1122332 22222333331 1123699999999743333344444 45688888
Q ss_pred EEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcc
Q psy2609 71 VVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 71 Vvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
+.+.. ....+..+++.+...++|+.+|-+|+|.
T Consensus 121 i~s~r--f~~ndv~La~~i~~~gK~fyfVRTKvD~ 153 (376)
T PF05049_consen 121 ISSER--FTENDVQLAKEIQRMGKKFYFVRTKVDS 153 (376)
T ss_dssp EESSS----HHHHHHHHHHHHTT-EEEEEE--HHH
T ss_pred EeCCC--CchhhHHHHHHHHHcCCcEEEEEecccc
Confidence 77543 4566677788888899999999999996
No 329
>PF06858 NOG1: Nucleolar GTP-binding protein 1 (NOG1); InterPro: IPR010674 This domain represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). The NOG1 family includes eukaryotic, bacterial and archaeal proteins. In Saccharomyces cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. In particular, NOG1 is believed to be functionally linked to ribosome biogenesis, which occurs in the nucleolus. In eukaryotes, NOG1 mutants were found to disrupt the biogenesis of the 60S ribosomal subunit []. The DRG and OBG proteins as well as the prokaryotic NOG-like proteins are homologous throughout their length to the amino half of eukaryotic NOG1, which contains the GTP binding motifs (IPR006073 from INTERPRO); the N-terminal GTP-binding motif is required for function.; GO: 0005525 GTP binding; PDB: 2E87_A.
Probab=97.26 E-value=0.0016 Score=39.91 Aligned_cols=48 Identities=29% Similarity=0.298 Sum_probs=25.5
Q ss_pred HHHHHHHh-cCEEEEEEeCCCCCC--hhHH-HHHHHHHH-c-CCCcEEEEECCc
Q psy2609 57 EVSTAVRL-CDGTIIVVDCVEGIC--AQTQ-VALKQAWL-E-KIQPILVLNKID 104 (161)
Q Consensus 57 ~~~~~l~~-~d~~ilVvd~~~~~~--~~~~-~~~~~~~~-~-~~p~ilv~NK~D 104 (161)
++..+++. .+++++++|.++... .... .+.+.++. . ++|+++|+||+|
T Consensus 5 qai~AL~hL~~~ilfi~D~Se~CGysie~Q~~L~~~ik~~F~~~P~i~V~nK~D 58 (58)
T PF06858_consen 5 QAITALAHLADAILFIIDPSEQCGYSIEEQLSLFKEIKPLFPNKPVIVVLNKID 58 (58)
T ss_dssp HHHHGGGGT-SEEEEEE-TT-TTSS-HHHHHHHHHHHHHHTTTS-EEEEE--TT
T ss_pred HHHHHHHhhcceEEEEEcCCCCCCCCHHHHHHHHHHHHHHcCCCCEEEEEeccC
Confidence 34455544 689999999985432 2222 22233332 3 899999999998
No 330
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=97.25 E-value=0.00012 Score=58.84 Aligned_cols=47 Identities=30% Similarity=0.244 Sum_probs=35.0
Q ss_pred HHhcCEEEEEEeCCCCC-ChhH-HHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 62 VRLCDGTIIVVDCVEGI-CAQT-QVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 62 l~~~d~~ilVvd~~~~~-~~~~-~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+.++|.+++|+|++++. +... ..++..+...++|+++|+||+||...
T Consensus 76 ~anvD~vllV~d~~~p~~s~~~ldr~L~~~~~~~ip~iIVlNK~DL~~~ 124 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDD 124 (287)
T ss_pred EEeCCEEEEEEEcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEHHHCCCh
Confidence 78899999999998765 3222 33344455678999999999999643
No 331
>PF00503 G-alpha: G-protein alpha subunit; InterPro: IPR001019 Guanine nucleotide binding proteins (G proteins) are membrane-associated, heterotrimeric proteins composed of three subunits: alpha (IPR001019 from INTERPRO), beta (IPR001632 from INTERPRO) and gamma (IPR001770 from INTERPRO) []. G proteins and their receptors (GPCRs) form one of the most prevalent signalling systems in mammalian cells, regulating systems as diverse as sensory perception, cell growth and hormonal regulation []. At the cell surface, the binding of ligands such as hormones and neurotransmitters to a GPCR activates the receptor by causing a conformational change, which in turn activates the bound G protein on the intracellular-side of the membrane. The activated receptor promotes the exchange of bound GDP for GTP on the G protein alpha subunit. GTP binding changes the conformation of switch regions within the alpha subunit, which allows the bound trimeric G protein (inactive) to be released from the receptor, and to dissociate into active alpha subunit (GTP-bound) and beta/gamma dimer. The alpha subunit and the beta/gamma dimer go on to activate distinct downstream effectors, such as adenylyl cyclase, phosphodiesterases, phospholipase C, and ion channels. These effectors in turn regulate the intracellular concentrations of secondary messengers, such as cAMP, diacylglycerol, sodium or calcium cations, which ultimately lead to a physiological response, usually via the downstream regulation of gene transcription. The cycle is completed by the hydrolysis of alpha subunit-bound GTP to GDP, resulting in the re-association of the alpha and beta/gamma subunits and their binding to the receptor, which terminates the signal []. The length of the G protein signal is controlled by the duration of the GTP-bound alpha subunit, which can be regulated by RGS (regulator of G protein signalling) proteins (IPR000342 from INTERPRO) or by covalent modifications []. There are several isoforms of each subunit, many of which have splice variants, which together can make up hundreds of combinations of G proteins. The specific combination of subunits in heterotrimeric G proteins affects not only which receptor it can bind to, but also which downstream target is affected, providing the means to target specific physiological processes in response to specific external stimuli [, ]. G proteins carry lipid modifications on one or more of their subunits to target them to the plasma membrane and to contribute to protein interactions. This family consists of the G protein alpha subunit, which acts as a weak GTPase. G protein classes are defined based on the sequence and function of their alpha subunits, which in mammals fall into four main categories: G(S)alpha, G(Q)alpha, G(I)alpha and G(12)alpha; there are also fungal and plant classes of alpha subunits. The alpha subunit consists of two domains: a GTP-binding domain and a helical insertion domain (IPR011025 from INTERPRO). The GTP-binding domain is homologous to Ras-like small GTPases, and includes switch regions I and II, which change conformation during activation. The switch regions are loops of alpha-helices with conformations sensitive to guanine nucleotides. The helical insertion domain is inserted into the GTP-binding domain before switch region I and is unique to heterotrimeric G proteins. This helical insertion domain functions to sequester the guanine nucleotide at the interface with the GTP-binding domain and must be displaced to enable nucleotide dissociation.; GO: 0004871 signal transducer activity, 0019001 guanyl nucleotide binding, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 3QI2_B 3QE0_A 2IK8_A 2OM2_A 2GTP_B 2XNS_B 3ONW_B 1KJY_A 2EBC_A 1Y3A_B ....
Probab=97.25 E-value=0.00051 Score=57.36 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=57.3
Q ss_pred CccccceEEEEe-ecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC---------CC--hhHHHHHH
Q psy2609 20 ITMKSSSISLYY-KDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG---------IC--AQTQVALK 87 (161)
Q Consensus 20 iti~~~~~~~~~-~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~---------~~--~~~~~~~~ 87 (161)
.|.......+.+ . ...+.++|..|+..-++.|..++.+++++|+|++..+- .. .....+++
T Consensus 221 ~T~Gi~e~~f~~~~-------~~~~~~~DvGGqr~eRkKW~~~F~~v~~vif~vsls~ydq~~~ed~~~nrl~esl~lF~ 293 (389)
T PF00503_consen 221 KTTGITEIDFNFSG-------SRKFRLIDVGGQRSERKKWIHCFEDVTAVIFVVSLSEYDQTLYEDPNTNRLHESLNLFE 293 (389)
T ss_dssp --SSEEEEEEEE-T-------TEEEEEEEETSSGGGGGGGGGGGTTESEEEEEEEGGGGGSBESSSTTSBHHHHHHHHHH
T ss_pred CCCCeeEEEEEeec-------ccccceecCCCCchhhhhHHHHhccccEEEEeecccchhhhhcccchHHHHHHHHHHHH
Confidence 344444555555 4 78999999999988888899999999999999997521 11 11122333
Q ss_pred HHHH----cCCCcEEEEECCcchhhhh
Q psy2609 88 QAWL----EKIQPILVLNKIDRLILEM 110 (161)
Q Consensus 88 ~~~~----~~~p~ilv~NK~Dl~~~~~ 110 (161)
.+.. .+.|+||+.||+|+.....
T Consensus 294 ~i~~~~~~~~~~iil~lnK~D~f~~Kl 320 (389)
T PF00503_consen 294 SICNNPWFKNTPIILFLNKIDLFEEKL 320 (389)
T ss_dssp HHHTSGGGTTSEEEEEEE-HHHHHHHT
T ss_pred HHHhCcccccCceEEeeecHHHHHHHc
Confidence 2221 3789999999999986543
No 332
>PRK00098 GTPase RsgA; Reviewed
Probab=97.23 E-value=0.00017 Score=58.26 Aligned_cols=45 Identities=33% Similarity=0.336 Sum_probs=33.0
Q ss_pred HHhcCEEEEEEeCCCCCC-hh-HHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 62 VRLCDGTIIVVDCVEGIC-AQ-TQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 62 l~~~d~~ilVvd~~~~~~-~~-~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..++|.+++|+|+++... .. ...++..+...++|+++|+||+|+.
T Consensus 78 aaniD~vllV~d~~~p~~~~~~idr~L~~~~~~~ip~iIVlNK~DL~ 124 (298)
T PRK00098 78 AANVDQAVLVFAAKEPDFSTDLLDRFLVLAEANGIKPIIVLNKIDLL 124 (298)
T ss_pred eecCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEhHHcC
Confidence 488999999999975432 22 1334444556789999999999996
No 333
>PF04548 AIG1: AIG1 family; InterPro: IPR006703 This entry represents a domain found in Arabidopsis protein AIG1 which appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 (avrRpt2-induced gene) exhibits RPS2- and avrRpt2-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2 []. The domain is also apparently found in a number of mammalian proteins, for example the rat immune-associated nucleotide 4 protein. ; GO: 0005525 GTP binding; PDB: 3LXX_A 3BB4_A 3DEF_A 3BB3_A 2J3E_A 3V70_B 3BB1_A 1H65_B 2XTP_A 3P1J_C ....
Probab=97.19 E-value=0.006 Score=46.74 Aligned_cols=99 Identities=17% Similarity=0.140 Sum_probs=53.7
Q ss_pred cccccccCCchhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHH----HHh
Q psy2609 3 CMVSSYMDSRKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTA----VRL 64 (161)
Q Consensus 3 ~g~~~~~D~~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~----l~~ 64 (161)
+||+++.+...... ...+|.........+. +..+.+|||||.-+ ....+..+ ..+
T Consensus 11 sGKSs~~N~ilg~~~f~~~~~~~~~t~~~~~~~~~~~-------g~~v~VIDTPGl~d~~~~~~~~~~~i~~~l~~~~~g 83 (212)
T PF04548_consen 11 SGKSSLGNSILGKEVFKSGSSAKSVTQECQKYSGEVD-------GRQVTVIDTPGLFDSDGSDEEIIREIKRCLSLCSPG 83 (212)
T ss_dssp SSHHHHHHHHHTSS-SS--TTTSS--SS-EEEEEEET-------TEEEEEEE--SSEETTEEHHHHHHHHHHHHHHTTT-
T ss_pred CCHHHHHHHHhcccceeeccccCCcccccceeeeeec-------ceEEEEEeCCCCCCCcccHHHHHHHHHHHHHhccCC
Confidence 57777754432111 1233444333444444 78999999999633 22233332 345
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHH-cC----CCcEEEEECCcchhhh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWL-EK----IQPILVLNKIDRLILE 109 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~-~~----~p~ilv~NK~Dl~~~~ 109 (161)
.+++++|+... .++..+...++.+.. .+ .-++++.+..|.....
T Consensus 84 ~ha~llVi~~~-r~t~~~~~~l~~l~~~FG~~~~k~~ivvfT~~d~~~~~ 132 (212)
T PF04548_consen 84 PHAFLLVIPLG-RFTEEDREVLELLQEIFGEEIWKHTIVVFTHADELEDD 132 (212)
T ss_dssp ESEEEEEEETT-B-SHHHHHHHHHHHHHHCGGGGGGEEEEEEEGGGGTTT
T ss_pred CeEEEEEEecC-cchHHHHHHHHHHHHHccHHHHhHhhHHhhhccccccc
Confidence 78999999988 566666666655543 22 2357788888866543
No 334
>PRK09602 translation-associated GTPase; Reviewed
Probab=97.18 E-value=0.00045 Score=58.05 Aligned_cols=74 Identities=19% Similarity=0.170 Sum_probs=45.6
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecC----------------CC-CCCceeEEEEeCCCch----h--
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDN----------------KD-TPEEYLINLIDSPGHV----D-- 53 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~----------------~~-~~~~~~i~iiDTpG~~----~-- 53 (161)
|+|||++++.+..... ++.|++........... .. .....++.||||||.. +
T Consensus 11 nvGKSTlfn~Lt~~~~~~~~y~f~t~~p~~g~~~v~~~~~~~r~~~~~~~~~~~~~~~~~~~~i~i~D~aGl~~ga~~g~ 90 (396)
T PRK09602 11 NVGKSTFFNAATLADVEIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGTRFIPVELIDVAGLVPGAHEGR 90 (396)
T ss_pred CCCHHHHHHHHhCCcccccCCCCcceeeeeeeeeeccCCchhhhhhhhccccccccCCcceeeEEEEEcCCcCCCccchh
Confidence 7999999877654332 34554444322221000 00 0123679999999952 2
Q ss_pred -hHHHHHHHHHhcCEEEEEEeCC
Q psy2609 54 -FSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 54 -~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
+.......++.+|++++|+|+.
T Consensus 91 glg~~fL~~ir~ad~ll~Vvd~~ 113 (396)
T PRK09602 91 GLGNQFLDDLRQADALIHVVDAS 113 (396)
T ss_pred hHHHHHHHHHHHCCEEEEEEeCC
Confidence 3345666699999999999996
No 335
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.15 E-value=0.00063 Score=56.38 Aligned_cols=56 Identities=21% Similarity=0.042 Sum_probs=43.2
Q ss_pred chhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 51 HVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 51 ~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.++|......+++.++++++|+|+.+....+...+.+.. .+.|+++|+||+|+...
T Consensus 50 ~e~f~~~l~~~~~~~~~Il~VvD~~d~~~s~~~~l~~~~--~~~piilV~NK~DLl~k 105 (360)
T TIGR03597 50 DDDFLNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFV--GGNPVLLVGNKIDLLPK 105 (360)
T ss_pred HHHHHHHHhhcccCCcEEEEEEECcCCCCCccHHHHHHh--CCCCEEEEEEchhhCCC
Confidence 567888888888999999999999876555544444433 37899999999999643
No 336
>cd02038 FleN-like FleN is a member of the Fer4_NifH superfamily. It shares the common function as an ATPase, with the ATP-binding domain at the N-terminus. In Pseudomonas aeruginosa, FleN gene is involved in regulating the number of flagella and chemotactic motility by influencing FleQ activity.
Probab=97.06 E-value=0.0063 Score=43.47 Aligned_cols=64 Identities=17% Similarity=0.145 Sum_probs=43.4
Q ss_pred eeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCcEEEEECCcch
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL--EKIQPILVLNKIDRL 106 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~ 106 (161)
+.+.++|||+.. .......+..+|.+++|++.+...-......++.+.. ...+..+++|+++..
T Consensus 45 yd~VIiD~p~~~--~~~~~~~l~~aD~vviv~~~~~~s~~~~~~~l~~l~~~~~~~~~~lVvN~~~~~ 110 (139)
T cd02038 45 YDYIIIDTGAGI--SDNVLDFFLAADEVIVVTTPEPTSITDAYALIKKLAKQLRVLNFRVVVNRAESP 110 (139)
T ss_pred CCEEEEECCCCC--CHHHHHHHHhCCeEEEEcCCChhHHHHHHHHHHHHHHhcCCCCEEEEEeCCCCH
Confidence 789999999853 3445678999999999998864322223334444432 234566999999754
No 337
>KOG1490|consensus
Probab=97.02 E-value=0.0025 Score=54.75 Aligned_cols=70 Identities=31% Similarity=0.320 Sum_probs=40.8
Q ss_pred ceeEEEEeCCCchh-----hHHH---HHHHHH-hcCEEEEEEeCCCCC--ChhHHHHH-HHHHH--cCCCcEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVD-----FSSE---VSTAVR-LCDGTIIVVDCVEGI--CAQTQVAL-KQAWL--EKIQPILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-----~~~~---~~~~l~-~~d~~ilVvd~~~~~--~~~~~~~~-~~~~~--~~~p~ilv~NK~Dl 105 (161)
-..++.+||||.-+ .+.. +..++. --.+++++.|.++.. +......+ ..++. .+.|.|+|+||+|+
T Consensus 214 YlrwQViDTPGILD~plEdrN~IEmqsITALAHLraaVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~ 293 (620)
T KOG1490|consen 214 YLRWQVIDTPGILDRPEEDRNIIEMQIITALAHLRSAVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDA 293 (620)
T ss_pred eeeeeecCCccccCcchhhhhHHHHHHHHHHHHhhhhheeeeechhhhCCCHHHHHHHHHHhHHHhcCCceEEEeecccc
Confidence 34799999999633 2111 222222 234788899987533 22221111 11211 48899999999999
Q ss_pred hhhh
Q psy2609 106 LILE 109 (161)
Q Consensus 106 ~~~~ 109 (161)
...+
T Consensus 294 m~~e 297 (620)
T KOG1490|consen 294 MRPE 297 (620)
T ss_pred cCcc
Confidence 7654
No 338
>KOG0099|consensus
Probab=96.99 E-value=0.0048 Score=49.28 Aligned_cols=70 Identities=26% Similarity=0.294 Sum_probs=51.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC-------CC-hhHH-------HHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG-------IC-AQTQ-------VALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~-------~~-~~~~-------~~~~~~~~~~~p~ilv~NK~D 104 (161)
...+...|..|+.+-+..+...+.++-++|+|+.++.- .+ .... .+|..-....+.+|+++||-|
T Consensus 201 kv~FhMfDVGGQRDeRrKWIQcFndvtAiifv~acSsyn~vlrED~~qNRL~EaL~LFksiWnNRwL~tisvIlFLNKqD 280 (379)
T KOG0099|consen 201 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVACSSYNMVLREDNQQNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 280 (379)
T ss_pred ccceeeeccCCchhhhhhHHHHhcCccEEEEEEeccchhhhhhcCCchhHHHHHHHHHHHHHhhhHHhhhheeEEecHHH
Confidence 67899999999999999999999999999999988621 11 1111 223222224578899999999
Q ss_pred chhhh
Q psy2609 105 RLILE 109 (161)
Q Consensus 105 l~~~~ 109 (161)
+....
T Consensus 281 llaeK 285 (379)
T KOG0099|consen 281 LLAEK 285 (379)
T ss_pred HHHHH
Confidence 97644
No 339
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=96.80 E-value=0.0016 Score=53.58 Aligned_cols=62 Identities=18% Similarity=0.119 Sum_probs=38.0
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++.+.|+||+|...-. ......||.+++|.+...+-.-+... . ....+.-++|+||+|+...
T Consensus 148 g~d~viieT~Gv~qs~---~~i~~~aD~vlvv~~p~~gd~iq~~k--~--gi~E~aDIiVVNKaDl~~~ 209 (332)
T PRK09435 148 GYDVILVETVGVGQSE---TAVAGMVDFFLLLQLPGAGDELQGIK--K--GIMELADLIVINKADGDNK 209 (332)
T ss_pred CCCEEEEECCCCccch---hHHHHhCCEEEEEecCCchHHHHHHH--h--hhhhhhheEEeehhcccch
Confidence 5789999999986322 22466799999997633222111111 0 0112334899999998753
No 340
>TIGR01007 eps_fam capsular exopolysaccharide family. This model describes the capsular exopolysaccharide proteins in bacteria. The exopolysaccharide gene cluster consists of several genes which encode a number of proteins which regulate the exoploysaccharide biosynthesis(EPS). Atleast 13 genes espA to espM in streptococcus species seem to direct the EPS proteins and all of which share high homology. Functional roles were characterized by gene disruption experiments which resulted in exopolysaccharide-deficient phenotypes.
Probab=96.77 E-value=0.0081 Score=45.41 Aligned_cols=67 Identities=27% Similarity=0.292 Sum_probs=48.0
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcchh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~ 107 (161)
.+.++|+|||..... .......+.+|.+|+|+++............+.+...+.+++ +|+||++...
T Consensus 127 ~yD~ViiD~pp~~~~-~~~~~~~~~~D~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~gvVlN~~~~~~ 194 (204)
T TIGR01007 127 YFDYIIIDTPPIGTV-TDAAIIARACDASILVTDAGEIKKRDVQKAKEQLEQTGSNFLGVVLNKVDISV 194 (204)
T ss_pred cCCEEEEeCCCcccc-chHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEEeCccccc
Confidence 578999999974221 123344567999999999875555555666677777788876 7999998643
No 341
>cd02036 MinD Bacterial cell division requires the formation of a septum at mid-cell. The site is determined by the min operon products MinC, MinD and MinE. MinC is a nonspecific inhibitor of the septum protein FtsZ. MinE is the supressor of MinC. MinD plays a pivotal role, selecting the mid-cell over other sites through the activation and regulation of MinC and MinE. MinD is a membrane-associated ATPase, related to nitrogenase iron protein. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. MinD is a monomer.
Probab=96.66 E-value=0.01 Score=43.30 Aligned_cols=63 Identities=17% Similarity=0.111 Sum_probs=44.4
Q ss_pred eEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.++++||||... ......+..+|.+|++++............++.+...+.+. .+++|+++..
T Consensus 64 d~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~iv~N~~~~~ 127 (179)
T cd02036 64 DYILIDSPAGIE--RGFITAIAPADEALLVTTPEISSLRDADRVKGLLEALGIKVVGVIVNRVRPD 127 (179)
T ss_pred CEEEEECCCCCc--HHHHHHHHhCCcEEEEeCCCcchHHHHHHHHHHHHHcCCceEEEEEeCCccc
Confidence 699999998643 34567789999999999887544344444555555555554 5899999864
No 342
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=96.65 E-value=0.0028 Score=49.65 Aligned_cols=64 Identities=23% Similarity=0.222 Sum_probs=46.9
Q ss_pred ceeEEEEeC-CCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC-CCcEEEEECCcch
Q psy2609 40 EYLINLIDS-PGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEK-IQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDT-pG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl~ 106 (161)
.+.+.++|| +|.|.|. +...+++|.+|+|+|.+...-...+.+.++....+ .++.+|+||+|-.
T Consensus 133 ~~e~VivDtEAGiEHfg---Rg~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 133 RYEVVIVDTEAGIEHFG---RGTIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred cCcEEEEecccchhhhc---cccccCCCEEEEEeCCcHHHHHHHHHHHHHHHHhCCceEEEEEeeccch
Confidence 468899999 6677665 34567899999999987433344455666666678 6778999999954
No 343
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=96.62 E-value=0.018 Score=47.70 Aligned_cols=71 Identities=20% Similarity=0.283 Sum_probs=48.3
Q ss_pred CCceeEEEEeCCCchhhH--------------HHHHHHHHh--------------cCEEEEEEeCC-CCCChhHHHHHHH
Q psy2609 38 PEEYLINLIDSPGHVDFS--------------SEVSTAVRL--------------CDGTIIVVDCV-EGICAQTQVALKQ 88 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~--------------~~~~~~l~~--------------~d~~ilVvd~~-~~~~~~~~~~~~~ 88 (161)
+-..+++++||||.-++. .+-..|+.. ++++++.+..+ .++.+.+.+..+.
T Consensus 79 ~~~~~l~vIDtpGfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ 158 (373)
T COG5019 79 GFHLNLTVIDTPGFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKR 158 (373)
T ss_pred CeEEEEEEeccCCccccccccccHHHHHHHHHHHHHHHHHHhhccccccccccCceEEEEEEecCCCCCCCHHHHHHHHH
Confidence 446789999999974421 122222221 46889988865 6777777766554
Q ss_pred HHHcCCCcEEEEECCcchhhh
Q psy2609 89 AWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 89 ~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+ ...+.+|-|+-|.|....+
T Consensus 159 l-s~~vNlIPVI~KaD~lT~~ 178 (373)
T COG5019 159 L-SKRVNLIPVIAKADTLTDD 178 (373)
T ss_pred H-hcccCeeeeeeccccCCHH
Confidence 4 3467889999999998765
No 344
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=96.58 E-value=0.0095 Score=48.11 Aligned_cols=62 Identities=21% Similarity=0.204 Sum_probs=40.0
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.+.|+||||.. ......+..+|.++++.....+ ........ ...++|.++|+||+|+...
T Consensus 126 g~D~viidT~G~~---~~e~~i~~~aD~i~vv~~~~~~---~el~~~~~-~l~~~~~ivv~NK~Dl~~~ 187 (300)
T TIGR00750 126 GYDVIIVETVGVG---QSEVDIANMADTFVVVTIPGTG---DDLQGIKA-GLMEIADIYVVNKADGEGA 187 (300)
T ss_pred CCCEEEEeCCCCc---hhhhHHHHhhceEEEEecCCcc---HHHHHHHH-HHhhhccEEEEEcccccch
Confidence 5789999999964 2223456778988888654321 22111111 1246889999999999754
No 345
>KOG2484|consensus
Probab=96.51 E-value=0.0083 Score=50.17 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=41.1
Q ss_pred hhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHH-H-cCCCcEEEEECCcchhhh
Q psy2609 53 DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAW-L-EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 53 ~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~-~-~~~p~ilv~NK~Dl~~~~ 109 (161)
.|.......+..+|++|.|+||.++......++-++.. . .+...|+|+||+|++..+
T Consensus 135 aY~ke~rkvve~sDVVleVlDARDPlgtR~~~vE~~V~~~~gnKkLILVLNK~DLVPrE 193 (435)
T KOG2484|consen 135 AYDKEFRKVVEASDVVLEVLDARDPLGTRCPEVEEAVLQAHGNKKLILVLNKIDLVPRE 193 (435)
T ss_pred HHHHHHHHHHhhhheEEEeeeccCCCCCCChhHHHHHHhccCCceEEEEeehhccCCHH
Confidence 35667778888899999999999877533333333332 2 347889999999998665
No 346
>PRK01889 GTPase RsgA; Reviewed
Probab=96.48 E-value=0.0061 Score=50.50 Aligned_cols=46 Identities=24% Similarity=0.292 Sum_probs=36.2
Q ss_pred HHhcCEEEEEEeCCCCCCh-hHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 62 VRLCDGTIIVVDCVEGICA-QTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 62 l~~~d~~ilVvd~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
..++|.+++|+++..++.. ....++..+...++|.++|+||+||..
T Consensus 110 aANvD~vliV~s~~p~~~~~~ldr~L~~a~~~~i~piIVLNK~DL~~ 156 (356)
T PRK01889 110 AANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVIVLTKADLCE 156 (356)
T ss_pred EEeCCEEEEEEecCCCCChhHHHHHHHHHHHcCCCEEEEEEChhcCC
Confidence 4678999999999766554 344556666778999999999999974
No 347
>PRK12288 GTPase RsgA; Reviewed
Probab=96.48 E-value=0.003 Score=52.18 Aligned_cols=45 Identities=29% Similarity=0.296 Sum_probs=32.1
Q ss_pred HhcCEEEEEEeCCCCCChhH-HHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 63 RLCDGTIIVVDCVEGICAQT-QVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 63 ~~~d~~ilVvd~~~~~~~~~-~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
.++|.+++|++......... ..++..+...++|.++|+||+|+..
T Consensus 119 ANvD~vlIV~s~~p~~s~~~Ldr~L~~a~~~~i~~VIVlNK~DL~~ 164 (347)
T PRK12288 119 ANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLD 164 (347)
T ss_pred EEccEEEEEEeCCCCCCHHHHHHHHHHHHhcCCCEEEEEECccCCC
Confidence 55899999999875554333 2233344556899999999999964
No 348
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.45 E-value=0.016 Score=50.84 Aligned_cols=99 Identities=13% Similarity=0.111 Sum_probs=70.6
Q ss_pred cccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhH
Q psy2609 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQT 82 (161)
Q Consensus 3 ~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~ 82 (161)
+||++++-.+..-.. ..|++-....+.... ++..+++|+.||. + ...+....+-||.+++++|+.-|..-.+
T Consensus 80 tGKsTLirSlVrr~t-k~ti~~i~GPiTvvs----gK~RRiTflEcp~--D-l~~miDvaKIaDLVlLlIdgnfGfEMET 151 (1077)
T COG5192 80 TGKSTLIRSLVRRFT-KQTIDEIRGPITVVS----GKTRRITFLECPS--D-LHQMIDVAKIADLVLLLIDGNFGFEMET 151 (1077)
T ss_pred CChhHHHHHHHHHHH-HhhhhccCCceEEee----cceeEEEEEeChH--H-HHHHHhHHHhhheeEEEeccccCceehH
Confidence 466666543322221 223333333333332 6688999999994 2 4466777788999999999999999999
Q ss_pred HHHHHHHHHcCCCcE-EEEECCcchhhh
Q psy2609 83 QVALKQAWLEKIQPI-LVLNKIDRLILE 109 (161)
Q Consensus 83 ~~~~~~~~~~~~p~i-lv~NK~Dl~~~~ 109 (161)
.+.+..+...+.|.+ .|++-.|+.+..
T Consensus 152 mEFLnil~~HGmPrvlgV~ThlDlfk~~ 179 (1077)
T COG5192 152 MEFLNILISHGMPRVLGVVTHLDLFKNP 179 (1077)
T ss_pred HHHHHHHhhcCCCceEEEEeecccccCh
Confidence 999999999999987 489999997643
No 349
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=96.39 E-value=0.013 Score=42.54 Aligned_cols=58 Identities=21% Similarity=0.286 Sum_probs=38.1
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 104 (161)
.+.+.|+||||.. ......+..||-+++|.... ..+...+........--++++||+|
T Consensus 91 ~~D~iiIDtaG~~---~~~~~~~~~Ad~~ivv~tpe----~~D~y~~~k~~~~~~~~~~~~~k~~ 148 (148)
T cd03114 91 GFDVIIVETVGVG---QSEVDIASMADTTVVVMAPG----AGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred CCCEEEEECCccC---hhhhhHHHhCCEEEEEECCC----chhHHHHhhhhHhhhcCEEEEeCCC
Confidence 5789999999964 33346889999999998765 1111111111222344589999998
No 350
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains. The long precursor of the 86K protein originally described is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation. The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.
Probab=96.30 E-value=0.022 Score=50.88 Aligned_cols=99 Identities=17% Similarity=0.033 Sum_probs=55.5
Q ss_pred ccccccccCCchhHHHcCC------ccccceEEEEeecCCCCCCceeEEEEeCCCchhh----------HHHHHHHHH--
Q psy2609 2 LCMVSSYMDSRKDEQERGI------TMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF----------SSEVSTAVR-- 63 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~gi------ti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~----------~~~~~~~l~-- 63 (161)
++||+++++..-.+..-.+ |.........+. +.++.+|||||..+. ...+..++.
T Consensus 128 GVGKSSLINSILGekvf~vss~~~~TTr~~ei~~~id-------G~~L~VIDTPGL~dt~~dq~~neeILk~Ik~~Lsk~ 200 (763)
T TIGR00993 128 GVGKSATINSIFGEVKFSTDAFGMGTTSVQEIEGLVQ-------GVKIRVIDTPGLKSSASDQSKNEKILSSVKKFIKKN 200 (763)
T ss_pred CCCHHHHHHHHhccccccccCCCCCceEEEEEEEEEC-------CceEEEEECCCCCccccchHHHHHHHHHHHHHHhcC
Confidence 6899999887766542111 111111111222 578999999998642 112333444
Q ss_pred hcCEEEEEEeCCCCCC-hhHHHHHHHHHH-cC----CCcEEEEECCcchh
Q psy2609 64 LCDGTIIVVDCVEGIC-AQTQVALKQAWL-EK----IQPILVLNKIDRLI 107 (161)
Q Consensus 64 ~~d~~ilVvd~~~~~~-~~~~~~~~~~~~-~~----~p~ilv~NK~Dl~~ 107 (161)
..|++|+|......-. ..+...++.+.. .+ .-+|+|.+..|...
T Consensus 201 gpDVVLlV~RLd~~~~D~eD~~aLr~Iq~lFG~~Iwk~tIVVFThgD~lp 250 (763)
T TIGR00993 201 PPDIVLYVDRLDMQTRDSNDLPLLRTITDVLGPSIWFNAIVTLTHAASAP 250 (763)
T ss_pred CCCEEEEEEeCCCccccHHHHHHHHHHHHHhCHHhHcCEEEEEeCCccCC
Confidence 3789999987653222 123334443322 22 34588999999874
No 351
>cd02037 MRP-like MRP (Multiple Resistance and pH adaptation) is a homologue of the Fer4_NifH superfamily. Like the other members of the superfamily, MRP contains a ATP-binding domain at the N-termini. It is found in bacteria as a membrane-spanning protein and functions as a Na+/H+ antiporter.
Probab=96.19 E-value=0.023 Score=41.68 Aligned_cols=66 Identities=23% Similarity=0.100 Sum_probs=46.7
Q ss_pred CceeEEEEeCCCchhhHHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAV--RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l--~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
+.+.+.|+|||+.-. ......+ ..+|.+++|+.............++.+...+.+++ +++|+.+..
T Consensus 66 ~~yD~VIiD~pp~~~--~~~~~~~~~~~ad~viiV~~p~~~s~~~~~~~~~~l~~~~~~~~gvv~N~~~~~ 134 (169)
T cd02037 66 GELDYLVIDMPPGTG--DEHLTLAQSLPIDGAVIVTTPQEVALDDVRKAIDMFKKVNIPILGVVENMSYFV 134 (169)
T ss_pred CCCCEEEEeCCCCCc--HHHHHHHhccCCCeEEEEECCchhhHHHHHHHHHHHHhcCCCeEEEEEcCCccc
Confidence 367899999999632 2233333 57899999998765444555666677777788875 789998853
No 352
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.19 E-value=0.04 Score=40.41 Aligned_cols=66 Identities=20% Similarity=0.257 Sum_probs=39.4
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAVR--LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l~--~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++.++++||||... .......... ..+.+++|+++..+. .............+ ..-++.||+|...
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~-~~~~~~~~~~~~~~-~~~viltk~D~~~ 153 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQ-DAVNQAKAFNEALG-ITGVILTKLDGDA 153 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCCh-HHHHHHHHHHhhCC-CCEEEEECCcCCC
Confidence 55689999999742 3333322222 379999999986432 22223333333334 3457889999764
No 353
>KOG2655|consensus
Probab=96.13 E-value=0.035 Score=46.11 Aligned_cols=71 Identities=20% Similarity=0.256 Sum_probs=48.5
Q ss_pred CCceeEEEEeCCCchhh--------------HHHHHHHHH-------------hcCEEEEEEeCC-CCCChhHHHHHHHH
Q psy2609 38 PEEYLINLIDSPGHVDF--------------SSEVSTAVR-------------LCDGTIIVVDCV-EGICAQTQVALKQA 89 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~--------------~~~~~~~l~-------------~~d~~ilVvd~~-~~~~~~~~~~~~~~ 89 (161)
+-..+++++||||.-++ ..+-..|+. .++++++.+..+ +|+.+.+....+.+
T Consensus 76 g~~l~LtvidtPGfGD~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l 155 (366)
T KOG2655|consen 76 GVKLNLTVIDTPGFGDAVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKL 155 (366)
T ss_pred CeEEeeEEeccCCCcccccccccchhhhHHHHHHHHHHHhhhccCCcccccCCceEEEEEEeCCCCCCCcHhhHHHHHHH
Confidence 45678999999997432 111222222 256899999876 56777776665544
Q ss_pred HHcCCCcEEEEECCcchhhh
Q psy2609 90 WLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 90 ~~~~~p~ilv~NK~Dl~~~~ 109 (161)
...+.+|-|+-|.|....+
T Consensus 156 -~~~vNiIPVI~KaD~lT~~ 174 (366)
T KOG2655|consen 156 -SKKVNLIPVIAKADTLTKD 174 (366)
T ss_pred -hccccccceeeccccCCHH
Confidence 3468889999999998765
No 354
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=96.04 E-value=0.017 Score=42.18 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=37.5
Q ss_pred ceeEEEEeCCCchhhHHHHH--------HHHHhcCEEEEEEeCCCCCChh--HHHHHHHHHHcCCCcEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVS--------TAVRLCDGTIIVVDCVEGICAQ--TQVALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~--------~~l~~~d~~ilVvd~~~~~~~~--~~~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
..+++|+||||..+-..... ...-..|.+++++|+....... ......++.. -=++++||+|+
T Consensus 86 ~~d~I~IEt~G~~~p~~~~~~~~~~~~~~~~~~~d~vv~vvDa~~~~~~~~~~~~~~~Qi~~---ad~ivlnk~dl 158 (158)
T cd03112 86 AFDRIVIETTGLADPGPVAQTFFMDEELAERYLLDGVITLVDAKHANQHLDQQTEAQSQIAF---ADRILLNKTDL 158 (158)
T ss_pred CCCEEEEECCCcCCHHHHHHHHhhchhhhcceeeccEEEEEEhhHhHHHhhccHHHHHHHHH---CCEEEEecccC
Confidence 56789999999864332222 2233478999999986432211 1112223322 23789999996
No 355
>TIGR01969 minD_arch cell division ATPase MinD, archaeal. This model represents the archaeal branch of the MinD family. MinD, a weak ATPase, works in bacteria with MinC as a generalized cell division inhibitor and, through interaction with MinE, prevents septum placement inappropriate sites. Often several members of this family are found in archaeal genomes, and the function is uncharacterized. More distantly related proteins include flagellar biosynthesis proteins and ParA chromosome partitioning proteins. The exact roles of the various archaeal MinD homologs are unknown.
Probab=96.01 E-value=0.035 Score=42.85 Aligned_cols=65 Identities=22% Similarity=0.162 Sum_probs=44.6
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.+-++++|||+... ..+...+..+|.+++|++.....-.............+.+. .+++|+.+..
T Consensus 108 ~yD~VIiD~p~~~~--~~~~~~l~~ad~vliv~~~~~~s~~~~~~~~~~~~~~~~~~~~vv~N~~~~~ 173 (251)
T TIGR01969 108 DTDFLLIDAPAGLE--RDAVTALAAADELLLVVNPEISSITDALKTKIVAEKLGTAILGVVLNRVTRD 173 (251)
T ss_pred hCCEEEEeCCCccC--HHHHHHHHhCCeEEEEECCCCchHHHHHHHHHHHHhcCCceEEEEEECCCch
Confidence 57899999998643 45667788999999999886332222233334444556665 4899999853
No 356
>cd03111 CpaE_like This protein family consists of proteins similar to the cpaE protein of the Caulobacter pilus assembly and the orf4 protein of Actinobacillus pilus formation gene cluster. The function of these proteins are unkown. The Caulobacter pilus assembly contains 7 genes: pilA, cpaA, cpaB, cpaC, cpaD, cpaE and cpaF. These genes are clustered together on chromosome.
Probab=95.97 E-value=0.031 Score=38.04 Aligned_cols=59 Identities=17% Similarity=0.086 Sum_probs=39.9
Q ss_pred eEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCC----CcEEEEEC
Q psy2609 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKI----QPILVLNK 102 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~----p~ilv~NK 102 (161)
.++++|||+... ......+..+|.++++++.+...........+.+...+. ++.+|+|+
T Consensus 44 D~IIiDtpp~~~--~~~~~~l~~aD~vlvvv~~~~~s~~~~~~~~~~l~~~~~~~~~~~~lVvNr 106 (106)
T cd03111 44 DYVVVDLGRSLD--EVSLAALDQADRVFLVTQQDLPSIRNAKRLLELLRVLDYSLPAKIELVLNR 106 (106)
T ss_pred CEEEEeCCCCcC--HHHHHHHHHcCeEEEEecCChHHHHHHHHHHHHHHHcCCCCcCceEEEecC
Confidence 789999999653 345678899999999998874333334444454444443 34578886
No 357
>KOG2485|consensus
Probab=95.97 E-value=0.013 Score=47.64 Aligned_cols=66 Identities=23% Similarity=0.182 Sum_probs=48.9
Q ss_pred eeEEEEeCCCch-hhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 41 YLINLIDSPGHV-DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 41 ~~i~iiDTpG~~-~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++...-+-|||- .-.+....-++..|++|=|-|+.-+++.....+-+.+. .+|.|+|.|||||+..
T Consensus 22 ~~~~~~wfpgHmakalr~i~~~l~~~D~iiEvrDaRiPLssrn~~~~~~~~--~k~riiVlNK~DLad~ 88 (335)
T KOG2485|consen 22 YNMPRRWFPGHMAKALRAIQNRLPLVDCIIEVRDARIPLSSRNELFQDFLP--PKPRIIVLNKMDLADP 88 (335)
T ss_pred cCCccccCchHHHHHHHHHHhhcccccEEEEeeccccCCccccHHHHHhcC--CCceEEEEecccccCc
Confidence 344556778873 34556777788899999999999777665555544443 7889999999999873
No 358
>PHA02518 ParA-like protein; Provisional
Probab=95.93 E-value=0.088 Score=39.49 Aligned_cols=64 Identities=13% Similarity=0.095 Sum_probs=40.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH-----cCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL-----EKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-----~~~p~i-lv~NK~Dl 105 (161)
.+.++|+||||.. ...+..++..+|.+|+++..+...-.....+.+.+.. .+.|.+ ++.|+.+.
T Consensus 76 ~~d~viiD~p~~~--~~~~~~~l~~aD~viip~~ps~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~n~~~~ 145 (211)
T PHA02518 76 GYDYVVVDGAPQD--SELARAALRIADMVLIPVQPSPFDIWAAPDLVELIKARQEVTDGLPKFAFIISRAIK 145 (211)
T ss_pred cCCEEEEeCCCCc--cHHHHHHHHHCCEEEEEeCCChhhHHHHHHHHHHHHHHHhhCCCCceEEEEEeccCC
Confidence 5789999999963 4567889999999999998863221222222222221 245554 66777654
No 359
>KOG0447|consensus
Probab=95.87 E-value=0.065 Score=46.98 Aligned_cols=86 Identities=22% Similarity=0.227 Sum_probs=58.7
Q ss_pred HcCCccccceEEEEeecCCCCCCc-eeEEEEeCCCc-------------hhhHHHHHHHHHhcCEEEEEEeCCCCCChhH
Q psy2609 17 ERGITMKSSSISLYYKDNKDTPEE-YLINLIDSPGH-------------VDFSSEVSTAVRLCDGTIIVVDCVEGICAQT 82 (161)
Q Consensus 17 ~~giti~~~~~~~~~~~~~~~~~~-~~i~iiDTpG~-------------~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~ 82 (161)
+-|.|+....+++..+ |.+ -++.++|.||. +........++.+.+++|+++- +|.-...
T Consensus 392 r~GkTVSnEvIsltVK-----GPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~msKayM~NPNAIILCIQ--DGSVDAE 464 (980)
T KOG0447|consen 392 KEGCTVSPETISLNVK-----GPGLQRMVLVDLPGVINTVTSGMAPDTKETIFSISKAYMQNPNAIILCIQ--DGSVDAE 464 (980)
T ss_pred cCCcccccceEEEeec-----CCCcceeEEecCCchhhhhcccccccchHHHHHHHHHHhcCCCeEEEEec--cCCcchh
Confidence 3477888777888777 334 36999999995 2345667888889999988872 2222111
Q ss_pred ----HHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 83 ----QVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 83 ----~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
-.+...+...+...|+|++|+|++..+
T Consensus 465 RSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447|consen 465 RSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred hhhHHHHHHhcCCCCCeeEEEEeecchhhhc
Confidence 223344445677789999999997654
No 360
>COG1149 MinD superfamily P-loop ATPase containing an inserted ferredoxin domain [Energy production and conversion]
Probab=95.85 E-value=0.031 Score=44.68 Aligned_cols=64 Identities=19% Similarity=0.068 Sum_probs=51.4
Q ss_pred eeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+.|+|||--- .-.+..++.++|.+|+|...+..--.+...+++.....++|..+|+||.++-
T Consensus 164 ~~~~IIDsaaG~--gCpVi~sl~~aD~ai~VTEPTp~glhD~kr~~el~~~f~ip~~iViNr~~~g 227 (284)
T COG1149 164 ADLLIIDSAAGT--GCPVIASLKGADLAILVTEPTPFGLHDLKRALELVEHFGIPTGIVINRYNLG 227 (284)
T ss_pred cceeEEecCCCC--CChHHHhhccCCEEEEEecCCccchhHHHHHHHHHHHhCCceEEEEecCCCC
Confidence 478999998742 2357789999999999999885544666777788888999999999999653
No 361
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.76 E-value=0.058 Score=45.90 Aligned_cols=65 Identities=20% Similarity=0.185 Sum_probs=38.7
Q ss_pred ceeEEEEeCCCchhh----HHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDF----SSEVSTAVR--LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~----~~~~~~~l~--~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.+.++|+||||.... ..+.....+ ..+-++||+|+..|-.. ..........--+--+++||+|-.
T Consensus 182 ~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a--~~~a~~F~~~~~~~g~IlTKlD~~ 252 (429)
T TIGR01425 182 NFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA--EAQAKAFKDSVDVGSVIITKLDGH 252 (429)
T ss_pred CCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH--HHHHHHHHhccCCcEEEEECccCC
Confidence 578999999996432 233333322 35789999999854322 222222222222446889999963
No 362
>COG1161 Predicted GTPases [General function prediction only]
Probab=95.69 E-value=0.016 Score=47.40 Aligned_cols=63 Identities=22% Similarity=0.224 Sum_probs=47.9
Q ss_pred EEeCCCc-hhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 45 LIDSPGH-VDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 45 iiDTpG~-~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+-+-||| .++..+....+..+|+++-|+|+..........+.+... +.|.++|+||+|+....
T Consensus 14 i~~~~g~~~k~~~~~~~~~~~~d~vvevvDar~P~~s~~~~l~~~v~--~k~~i~vlNK~DL~~~~ 77 (322)
T COG1161 14 IQWFPGHMKKAKRQLKEVLKSVDVVVEVVDARDPLGTRNPELERIVK--EKPKLLVLNKADLAPKE 77 (322)
T ss_pred ccCCCCchHHHHHHHHHhcccCCEEEEEEeccccccccCccHHHHHc--cCCcEEEEehhhcCCHH
Confidence 3445887 467888999999999999999999776655555544443 45669999999998654
No 363
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=95.64 E-value=0.098 Score=41.78 Aligned_cols=66 Identities=20% Similarity=0.281 Sum_probs=38.2
Q ss_pred CceeEEEEeCCCchhhHH----HHHH---HHH-----hcCEEEEEEeCCCCCChhHHHHHHHHHHcCC-CcEEEEECCcc
Q psy2609 39 EEYLINLIDSPGHVDFSS----EVST---AVR-----LCDGTIIVVDCVEGICAQTQVALKQAWLEKI-QPILVLNKIDR 105 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~----~~~~---~l~-----~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl 105 (161)
.++.+.|+||||...... +... ... ..|..++|+|++.+ ...........+ .+ +.-+++||+|-
T Consensus 153 ~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~--~~~~~~~~~f~~-~~~~~g~IlTKlDe 229 (272)
T TIGR00064 153 RNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG--QNALEQAKVFNE-AVGLTGIILTKLDG 229 (272)
T ss_pred CCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC--HHHHHHHHHHHh-hCCCCEEEEEccCC
Confidence 357899999999643222 2222 222 27899999999743 222222222111 23 34689999997
Q ss_pred hh
Q psy2609 106 LI 107 (161)
Q Consensus 106 ~~ 107 (161)
..
T Consensus 230 ~~ 231 (272)
T TIGR00064 230 TA 231 (272)
T ss_pred CC
Confidence 43
No 364
>KOG0448|consensus
Probab=95.63 E-value=0.028 Score=49.92 Aligned_cols=67 Identities=24% Similarity=0.219 Sum_probs=48.4
Q ss_pred eEEEEeCCCch---hhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcchhhh
Q psy2609 42 LINLIDSPGHV---DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRLILE 109 (161)
Q Consensus 42 ~i~iiDTpG~~---~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~~~ 109 (161)
-+.++|.||.. .+...+......+|++|+|+.+....+......+...... +|. +++.||+|....+
T Consensus 207 DivliDsPGld~~se~tswid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~~-KpniFIlnnkwDasase 277 (749)
T KOG0448|consen 207 DIVLIDSPGLDVDSELTSWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSEE-KPNIFILNNKWDASASE 277 (749)
T ss_pred cceeccCCCCCCchhhhHHHHHHhhcCCeEEEEecCccHhHHHHHHHHHHhhcc-CCcEEEEechhhhhccc
Confidence 48899999974 4556677777889999999999866655555555444444 665 5778899986543
No 365
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.54 E-value=0.053 Score=45.34 Aligned_cols=67 Identities=13% Similarity=0.068 Sum_probs=42.1
Q ss_pred ceeEEEEeCCCchh---hHHHHHHHHHhc---CEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-------EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVD---FSSEVSTAVRLC---DGTIIVVDCVEGICAQTQVALKQAWLEKIQP-------ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~---~~~~~~~~l~~~---d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-------ilv~NK~Dl~ 106 (161)
++.+++|||||... +.......+..+ .-.++|++++.+.......++.+....++|. =++++|+|-.
T Consensus 215 ~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt 294 (374)
T PRK14722 215 NKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEA 294 (374)
T ss_pred CCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccC
Confidence 56899999999753 333333444443 3458999998766555555555544433332 4788999964
No 366
>PRK13796 GTPase YqeH; Provisional
Probab=95.36 E-value=0.033 Score=46.29 Aligned_cols=52 Identities=23% Similarity=0.098 Sum_probs=35.0
Q ss_pred hhHHHHHHHHHhcC-EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 53 DFSSEVSTAVRLCD-GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 53 ~~~~~~~~~l~~~d-~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+|.. +...+...+ .+++|+|+.+....+...+.+.. .+.|+++|+||+|+..
T Consensus 58 ~~~~-~l~~i~~~~~lIv~VVD~~D~~~s~~~~L~~~~--~~kpviLViNK~DLl~ 110 (365)
T PRK13796 58 DFLK-LLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFV--GNNPVLLVGNKADLLP 110 (365)
T ss_pred HHHH-HHHhhcccCcEEEEEEECccCCCchhHHHHHHh--CCCCEEEEEEchhhCC
Confidence 4544 555566666 88999999875544433333322 3789999999999964
No 367
>TIGR03029 EpsG chain length determinant protein tyrosine kinase EpsG. The proteins in this family are homologs of the EpsG protein found in Methylobacillus strain 12S and are generally found in operons with other Eps homologs. The protein is believed to function as the protein tyrosine kinase component of the chain length regulator (along with the transmembrane component EpsF).
Probab=95.23 E-value=0.095 Score=41.41 Aligned_cols=62 Identities=21% Similarity=0.258 Sum_probs=45.0
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEEC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNK 102 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK 102 (161)
.+-++|+|||.... ...+......+|++|+|+..............+.+...+.+++ +|+|+
T Consensus 212 ~yD~ViiD~pp~~~-~~d~~~~~~~~d~vilV~~~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~ 274 (274)
T TIGR03029 212 DYDVVIVDTPSAEH-SSDAQIVATRARGTLIVSRVNETRLHELTSLKEHLSGVGVRVVGAVLNQ 274 (274)
T ss_pred cCCEEEEeCCCccc-ccHHHHHHHhCCeEEEEEECCCCCHHHHHHHHHHHHhCCCCEEEEEeCC
Confidence 47799999998633 2345556778999999998875544555666677777788887 67775
No 368
>cd02035 ArsA ArsA ATPase functionas as an efflux pump located on the inner membrane of the cell. This ATP-driven oxyanion pump catalyzes the extrusion of arsenite, antimonite and arsenate. Maintenance of a low intracellular concentration of oxyanion produces resistance to the toxic agents. The pump is composed of two subunits, the catalytic ArsA subunit and the membrane subunit ArsB, which are encoded by arsA and arsB genes respectively. Arsenic efflux in bacteria is catalyzed by either ArsB alone or by ArsAB complex. The ATP-coupled pump, however, is more efficient. ArsA is composed of two homologous halves, A1 and A2, connected by a short linker sequence.
Probab=95.06 E-value=0.22 Score=38.15 Aligned_cols=66 Identities=15% Similarity=-0.007 Sum_probs=46.8
Q ss_pred eeEEEEeCCCchhhH-HHHHHHHHh--cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 41 YLINLIDSPGHVDFS-SEVSTAVRL--CDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~-~~~~~~l~~--~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
+-++++|||...... ..+...+.. +|.+++|+.............++.+...+.++ -+|+|++...
T Consensus 114 yD~IIiD~pp~~~~~~~l~~~~l~~~~~~~vllV~~p~~~s~~~~~~~l~~l~~~~~~~~glVlN~~~~~ 183 (217)
T cd02035 114 YDVIVFDTAPTGHTLRLLVRELLTDPERTSFRLVTLPEKLPLYETERAITELALYGIPVDAVVVNRVLPA 183 (217)
T ss_pred CCEEEECCCCchHHHHHHHHHHccCCCceEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCc
Confidence 889999999753322 223444444 47899999887655566677778888878776 5899998754
No 369
>CHL00175 minD septum-site determining protein; Validated
Probab=95.05 E-value=0.083 Score=41.89 Aligned_cols=64 Identities=17% Similarity=0.141 Sum_probs=42.8
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-cEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQ-PILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl 105 (161)
.+.++++|||+.- ......++..+|.+++|++.+...-.......+.+...+.+ .-+++|+++.
T Consensus 126 ~yD~VIiDtpp~~--~~~~~~~l~~aD~viiV~~p~~~si~~~~~~~~~l~~~~~~~~~lvvN~~~~ 190 (281)
T CHL00175 126 GYDYILIDCPAGI--DVGFINAIAPAQEAIVVTTPEITAIRDADRVAGLLEANGIYNVKLLVNRVRP 190 (281)
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHhcCeeEEEcCCChHHHHHHHHHHHHHHHcCCCceEEEEeccCh
Confidence 5789999999863 34556777889999999977632223333444555544443 4588999974
No 370
>TIGR01968 minD_bact septum site-determining protein MinD. This model describes the bacterial and chloroplast form of MinD, a multifunctional cell division protein that guides correct placement of the septum. The homologous archaeal MinD proteins, with many archaeal genomes having two or more forms, are described by a separate model.
Probab=94.99 E-value=0.093 Score=40.65 Aligned_cols=64 Identities=20% Similarity=0.262 Sum_probs=43.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCC-CcEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKI-QPILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl 105 (161)
.+.++++|||+... ..+..++..+|.+|+|+.+....-.....+++.+...+. +..+++|+++.
T Consensus 111 ~~D~viiD~p~~~~--~~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~iviN~~~~ 175 (261)
T TIGR01968 111 EFDYVIIDCPAGIE--SGFRNAVAPADEAIVVTTPEVSAVRDADRVIGLLEAKGIEKIHLIVNRLRP 175 (261)
T ss_pred hCCEEEEeCCCCcC--HHHHHHHHhCCeEEEEcCCCcHHHHHHHHHHHHHHHcCCCceEEEEeCcCc
Confidence 47899999998643 345567889999999998763322333444444444443 56689999975
No 371
>KOG2423|consensus
Probab=94.76 E-value=0.069 Score=45.08 Aligned_cols=48 Identities=21% Similarity=0.203 Sum_probs=35.3
Q ss_pred HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc--CCCcEEEEECCcchh
Q psy2609 60 TAVRLCDGTIIVVDCVEGICAQTQVALKQAWLE--KIQPILVLNKIDRLI 107 (161)
Q Consensus 60 ~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~ 107 (161)
..+..+|++|-|+|+.++.......+-.++++. .+-+|+|+|||||+.
T Consensus 209 KViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVP 258 (572)
T KOG2423|consen 209 KVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVP 258 (572)
T ss_pred HhhcccceeEEeeeccCCcccccHHHHHHHhhcCCcceeEEEeecccccc
Confidence 334457899999999987766556665666553 445689999999974
No 372
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=94.70 E-value=0.054 Score=51.49 Aligned_cols=65 Identities=20% Similarity=0.216 Sum_probs=38.3
Q ss_pred eEEEEeCCCch--------hhHHHHHHHH---------HhcCEEEEEEeCCCCCChhHH---HHH--------HHH--HH
Q psy2609 42 LINLIDSPGHV--------DFSSEVSTAV---------RLCDGTIIVVDCVEGICAQTQ---VAL--------KQA--WL 91 (161)
Q Consensus 42 ~i~iiDTpG~~--------~~~~~~~~~l---------~~~d~~ilVvd~~~~~~~~~~---~~~--------~~~--~~ 91 (161)
+-++|||+|.. .-...+...+ +-.+|+|+++|+.+-...... .+. +.. ..
T Consensus 162 ~avliDtaG~y~~~~~~~~~~~~~W~~fL~~L~k~R~r~plnGvil~vs~~~Ll~~~~~~~~~~a~~lR~rl~el~~~lg 241 (1169)
T TIGR03348 162 EAVLIDTAGRYTTQDSDPEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLG 241 (1169)
T ss_pred CEEEEcCCCccccCCCcccccHHHHHHHHHHHHHhCCCCCCCeEEEEEEHHHHhCCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 67899999921 1112222222 236999999998744321111 111 111 12
Q ss_pred cCCCcEEEEECCcch
Q psy2609 92 EKIQPILVLNKIDRL 106 (161)
Q Consensus 92 ~~~p~ilv~NK~Dl~ 106 (161)
..+|+-++++|||+.
T Consensus 242 ~~~PVYvv~Tk~Dll 256 (1169)
T TIGR03348 242 ARFPVYLVLTKADLL 256 (1169)
T ss_pred CCCCEEEEEecchhh
Confidence 479999999999986
No 373
>PRK13849 putative crown gall tumor protein VirC1; Provisional
Probab=94.68 E-value=0.14 Score=39.80 Aligned_cols=64 Identities=9% Similarity=0.023 Sum_probs=42.2
Q ss_pred CceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHH------HcCCCcEEEEECCc
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAW------LEKIQPILVLNKID 104 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~------~~~~p~ilv~NK~D 104 (161)
+.+-++||||||... ..+..++..+|.+|+.+.++...-......+..+. ..++|..+++|.++
T Consensus 82 ~~yD~iiID~pp~~~--~~~~~al~~aD~vliP~~ps~~d~~~~~~~~~~v~~~~~~~~~~l~~~iv~~~~~ 151 (231)
T PRK13849 82 QGFDYALADTHGGSS--ELNNTIIASSNLLLIPTMLTPLDIDEALSTYRYVIELLLSENLAIPTAILRQRVP 151 (231)
T ss_pred CCCCEEEEeCCCCcc--HHHHHHHHHCCEEEEeccCcHHHHHHHHHHHHHHHHHHHHhCCCCCeEEEEEecc
Confidence 368899999999753 55778899999999888765221111112221111 23677789999986
No 374
>KOG1547|consensus
Probab=94.54 E-value=0.55 Score=37.34 Aligned_cols=71 Identities=20% Similarity=0.221 Sum_probs=44.6
Q ss_pred CCceeEEEEeCCCchhh--------------HHHHHHHHHh--------------cCEEEEEEeCC-CCCChhHHHHHHH
Q psy2609 38 PEEYLINLIDSPGHVDF--------------SSEVSTAVRL--------------CDGTIIVVDCV-EGICAQTQVALKQ 88 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~--------------~~~~~~~l~~--------------~d~~ilVvd~~-~~~~~~~~~~~~~ 88 (161)
+-..+++++||||+-++ ..+-..|++. +.++++.+..+ ..+.+-+.+.+..
T Consensus 101 gVklkltviDTPGfGDqInN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkr 180 (336)
T KOG1547|consen 101 GVKLKLTVIDTPGFGDQINNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKR 180 (336)
T ss_pred ceEEEEEEecCCCcccccCccchhHHHHHHHHHHHHHHHHHHHhHHhhhcCCCceEEEEEEEeCCCCCccCcccHHHHHH
Confidence 44678999999997432 1122223321 46888888876 3455666666554
Q ss_pred HHHcCCCcEEEEECCcchhhh
Q psy2609 89 AWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 89 ~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+.+ -+.++-|+-|.|...-+
T Consensus 181 Lt~-vvNvvPVIakaDtlTle 200 (336)
T KOG1547|consen 181 LTE-VVNVVPVIAKADTLTLE 200 (336)
T ss_pred Hhh-hheeeeeEeecccccHH
Confidence 432 35667789999976544
No 375
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=94.54 E-value=0.26 Score=40.29 Aligned_cols=65 Identities=22% Similarity=0.293 Sum_probs=37.7
Q ss_pred CceeEEEEeCCCchh----hHHHHHHHHH--------hcCEEEEEEeCCCCCChhHHHHHHHHHHcCC-CcEEEEECCcc
Q psy2609 39 EEYLINLIDSPGHVD----FSSEVSTAVR--------LCDGTIIVVDCVEGICAQTQVALKQAWLEKI-QPILVLNKIDR 105 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~----~~~~~~~~l~--------~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~-p~ilv~NK~Dl 105 (161)
.++.++++||||... ...+.....+ ..+..++|+|++.+..... ...... ..+ +.-+++||+|.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~-~a~~f~--~~~~~~giIlTKlD~ 271 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALS-QAKAFH--EAVGLTGIILTKLDG 271 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHH-HHHHHH--hhCCCCEEEEECCCC
Confidence 357899999999642 1223333322 2567899999985432211 221111 123 34689999996
Q ss_pred h
Q psy2609 106 L 106 (161)
Q Consensus 106 ~ 106 (161)
.
T Consensus 272 t 272 (318)
T PRK10416 272 T 272 (318)
T ss_pred C
Confidence 4
No 376
>KOG1424|consensus
Probab=94.46 E-value=0.082 Score=45.72 Aligned_cols=54 Identities=17% Similarity=0.103 Sum_probs=37.0
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH--cCCCcEEEEECCcchhhh
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL--EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~--~~~p~ilv~NK~Dl~~~~ 109 (161)
++....+..+|++|.++|+.+..-.....+-.+... ..+..+|++||.||...+
T Consensus 166 RQLWRVlErSDivvqIVDARnPllfr~~dLe~Yvke~d~~K~~~LLvNKaDLl~~~ 221 (562)
T KOG1424|consen 166 RQLWRVLERSDIVVQIVDARNPLLFRSPDLEDYVKEVDPSKANVLLVNKADLLPPE 221 (562)
T ss_pred HHHHHHHhhcceEEEEeecCCccccCChhHHHHHhccccccceEEEEehhhcCCHH
Confidence 345667778999999999997764333233233332 245678999999998765
No 377
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=94.17 E-value=0.21 Score=37.92 Aligned_cols=66 Identities=23% Similarity=0.165 Sum_probs=37.3
Q ss_pred ceeEEEEeCCCchhh----HHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVDF----SSEVSTAVR--LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~----~~~~~~~l~--~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++.++||||||.... .......+. ..+-+++|++++.+... ...........+ +-=++++|+|-..
T Consensus 83 ~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~-~~~~~~~~~~~~-~~~lIlTKlDet~ 154 (196)
T PF00448_consen 83 GYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED-LEQALAFYEAFG-IDGLILTKLDETA 154 (196)
T ss_dssp TSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH-HHHHHHHHHHSS-TCEEEEESTTSSS
T ss_pred CCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH-HHHHHHHhhccc-CceEEEEeecCCC
Confidence 467999999996432 223333333 35788999999854322 122323222223 3356799999743
No 378
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=94.14 E-value=0.26 Score=42.10 Aligned_cols=62 Identities=18% Similarity=0.309 Sum_probs=37.4
Q ss_pred eeEEEEeCCCchhhHHH----H--HHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcc
Q psy2609 41 YLINLIDSPGHVDFSSE----V--STAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDR 105 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~----~--~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 105 (161)
+.++++||||....... . ...+..+|.+++|+|++.+ .......+. ....+++ -+++||+|-
T Consensus 176 ~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~g--q~av~~a~~-F~~~l~i~gvIlTKlD~ 244 (437)
T PRK00771 176 ADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIG--QQAKNQAKA-FHEAVGIGGIIITKLDG 244 (437)
T ss_pred CCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEecccc--HHHHHHHHH-HHhcCCCCEEEEecccC
Confidence 47999999996543222 1 2234457899999999765 222222222 1223555 478899995
No 379
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.11 E-value=0.015 Score=44.31 Aligned_cols=60 Identities=18% Similarity=0.124 Sum_probs=32.5
Q ss_pred eeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
.-+.+++|.|.-... ..+....+..+.|+|+..+.... .......+.|.++++||+|+..
T Consensus 103 ~d~IiIEt~G~l~~~---~~~~~~~~~~i~Vvd~~~~d~~~----~~~~~~~~~a~iiv~NK~Dl~~ 162 (207)
T TIGR00073 103 IDLLFIENVGNLVCP---ADFDLGEHMRVVLLSVTEGDDKP----LKYPGMFKEADLIVINKADLAE 162 (207)
T ss_pred CCEEEEecCCCcCCC---cccccccCeEEEEEecCcccchh----hhhHhHHhhCCEEEEEHHHccc
Confidence 466777777721000 01112245556677776433211 1222234578899999999974
No 380
>TIGR00092 GTP-binding protein YchF. This predicted GTP-binding protein is found in a single copy in every complete bacterial genome, and is found in Eukaryotes. A more distantly related protein, separated from this model, is found in the archaea. It is known to bind GTP and double-stranded nucleic acid. It is suggested to belong to a nucleoprotein complex and act as a translation factor.
Probab=93.90 E-value=0.067 Score=44.65 Aligned_cols=74 Identities=15% Similarity=0.125 Sum_probs=48.1
Q ss_pred ccccccccCCchhHHH------cCCccccceEEEEeecCC---------C-CCCceeEEEEeCCCchh-------hHHHH
Q psy2609 2 LCMVSSYMDSRKDEQE------RGITMKSSSISLYYKDNK---------D-TPEEYLINLIDSPGHVD-------FSSEV 58 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~------~giti~~~~~~~~~~~~~---------~-~~~~~~i~iiDTpG~~~-------~~~~~ 58 (161)
|+|||++++.+..... +..|++.....+.+...- + .....++.++|.||... +....
T Consensus 12 n~GKSTlfnaLT~~~~~~~a~ypftTi~p~~g~v~v~d~r~d~L~~~~~~~~~~~a~i~~~DiaGlv~gAs~g~Glgn~f 91 (368)
T TIGR00092 12 NVGKSTLFAATTNLLGNEAANPPFTTIEPNAGVVNPSDPRLDLLAIYIKPEKVPPTTTEFVDIAGLVGGASKGEGLGNQF 91 (368)
T ss_pred CCChHHHHHHHhCCCccccCCCCCCCCCCceeEEEechhHHHHHHHHhCCcCcCCceEEEEeccccccchhcccCcchHH
Confidence 7899998766543332 444555555444443100 0 11234789999999743 45567
Q ss_pred HHHHHhcCEEEEEEeCC
Q psy2609 59 STAVRLCDGTIIVVDCV 75 (161)
Q Consensus 59 ~~~l~~~d~~ilVvd~~ 75 (161)
...++.+|+++.|+++.
T Consensus 92 L~~ir~~d~l~hVvr~f 108 (368)
T TIGR00092 92 LANIREVDIIQHVVRCF 108 (368)
T ss_pred HHHHHhCCEEEEEEeCC
Confidence 78899999999999985
No 381
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=93.87 E-value=0.25 Score=42.06 Aligned_cols=63 Identities=22% Similarity=0.368 Sum_probs=35.5
Q ss_pred ceeEEEEeCCCchh----hHHHHHHH--HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcc
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTA--VRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~--l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 105 (161)
.+.++|+||||... ........ .-..+.+++|+|+..+ ........... ..+++ =++.||+|-
T Consensus 182 ~~DvVIIDTaGr~~~d~~l~~eL~~i~~~~~p~e~lLVvda~tg--q~~~~~a~~f~-~~v~i~giIlTKlD~ 251 (428)
T TIGR00959 182 GFDVVIVDTAGRLQIDEELMEELAAIKEILNPDEILLVVDAMTG--QDAVNTAKTFN-ERLGLTGVVLTKLDG 251 (428)
T ss_pred CCCEEEEeCCCccccCHHHHHHHHHHHHhhCCceEEEEEeccch--HHHHHHHHHHH-hhCCCCEEEEeCccC
Confidence 46799999999532 22222111 2236788999998743 22222222221 23454 377999994
No 382
>PF01656 CbiA: CobQ/CobB/MinD/ParA nucleotide binding domain; InterPro: IPR002586 This entry consists of various cobyrinic acid a,c-diamide synthases. These include CbiA and CbiP from Salmonella typhimurium []., and CobQ from Rhodobacter capsulatus []. These amidases catalyse amidations to various side chains of hydrogenobyrinic acid or cobyrinic acid a,c-diamide in the biosynthesis of cobalamin (vitamin B12) from uroporphyrinogen III. Vitamin B12 is an important cofactor and an essential nutrient for many plants and animals and is primarily produced by bacteria [].; PDB: 3K9G_A 3K9H_B 3EZ9_B 3EZF_A 3EZ2_B 3EZ6_A 3EZ7_A 1G3Q_A 1G3R_A 1DTS_A ....
Probab=93.72 E-value=0.11 Score=38.23 Aligned_cols=64 Identities=17% Similarity=0.112 Sum_probs=43.6
Q ss_pred eeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCC---CcEEEEECCcch
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKI---QPILVLNKIDRL 106 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~---p~ilv~NK~Dl~ 106 (161)
+.+.++|||+.-... +...+..+|.+|++++.+...-.....+...+...+. ..-+|+||++..
T Consensus 95 yD~iiiD~~~~~~~~--~~~~l~~ad~viv~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~vv~N~v~~~ 161 (195)
T PF01656_consen 95 YDYIIIDTPPGLSDP--VRNALAAADYVIVPIEPDPSSIEGAERLIELLKRLGKKLKIIGVVINRVDPG 161 (195)
T ss_dssp SSEEEEEECSSSSHH--HHHHHHTSSEEEEEEESSHHHHHHHHHHHHHHHHHTHTEEEEEEEEEEETSC
T ss_pred ccceeecccccccHH--HHHHHHhCceeeeecCCcHHHHHHHHHHHHHHHHhccccceEEEEEeeeCCC
Confidence 789999999965433 6778889999999999863222222334445554442 235799999764
No 383
>PRK14974 cell division protein FtsY; Provisional
Probab=93.56 E-value=0.42 Score=39.46 Aligned_cols=65 Identities=23% Similarity=0.248 Sum_probs=37.9
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-cEEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAVR--LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l~--~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
++.+++|||||... +........+ ..|..++|+|+..+- ........... .++ --+++||+|...
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~--d~~~~a~~f~~-~~~~~giIlTKlD~~~ 293 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGN--DAVEQAREFNE-AVGIDGVILTKVDADA 293 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccch--hHHHHHHHHHh-cCCCCEEEEeeecCCC
Confidence 45699999999643 2233333222 368899999997542 22222222111 233 468899999753
No 384
>TIGR03371 cellulose_yhjQ cellulose synthase operon protein YhjQ. Members of this family are the YhjQ protein, found immediately upsteam of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae. In several species it is seen clearly as part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm (PubMed:16930487), based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=93.41 E-value=0.31 Score=37.48 Aligned_cols=64 Identities=25% Similarity=0.203 Sum_probs=40.6
Q ss_pred eeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHH-HHHHHHHH--cCCCcEEEEECCcch
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ-VALKQAWL--EKIQPILVLNKIDRL 106 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~-~~~~~~~~--~~~p~ilv~NK~Dl~ 106 (161)
+-+.++|||+. +...+..++..+|.+++++..+........ ........ ...+.-+++|++|..
T Consensus 115 ~D~viiD~pp~--~~~~~~~~l~~ad~vii~~~~~~~s~~~~~~~~~~l~~~~~~~~~~~iv~n~~~~~ 181 (246)
T TIGR03371 115 RDWVLIDVPRG--PSPITRQALAAADLVLVVVNADAACYATLHQQALALFAGSGPRIGPHFLINQFDPA 181 (246)
T ss_pred CCEEEEECCCC--chHHHHHHHHhCCeEEEEeCCCHHHHHHHHHHHHHHhhcccccccceEEeeccCcc
Confidence 36999999994 455677889999999999987521111111 11122221 234456899999854
No 385
>cd02032 Bchl_like This family of proteins contains bchL and chlL. Protochlorophyllide reductase catalyzes the reductive formation of chlorophyllide from protochlorophyllide during biosynthesis of chlorophylls and bacteriochlorophylls. Three genes, bchL, bchN and bchB, are involved in light-independent protochlorophyllide reduction in bacteriochlorophyll biosynthesis. In cyanobacteria, algae, and gymnosperms, three similar genes, chlL, chlN and chlB are involved in protochlorophyllide reduction during chlorophylls biosynthesis. BchL/chlL, bchN/chlN and bchB/chlB exhibit significant sequence similarity to the nifH, nifD and nifK subunits of nitrogenase, respectively. Nitrogenase catalyzes the reductive formation of ammonia from dinitrogen.
Probab=93.34 E-value=0.3 Score=38.39 Aligned_cols=65 Identities=22% Similarity=0.210 Sum_probs=39.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH----HHcCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQA----WLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~----~~~~~p~i-lv~NK~Dl 105 (161)
.+-+.|+||||.... ..+..++..||.+|+++.++...-......++.+ ...+++.+ +++|+++.
T Consensus 115 ~yD~vIIDt~g~~~~-~~~~~al~~aD~vlip~~p~~~~l~~~~~~~~~i~~~~~~~~l~~~giV~Nr~~~ 184 (267)
T cd02032 115 EYDVILFDVLGDVVC-GGFAAPLNYADYALIVTDNDFDSIFAANRIAAAVREKAKTYKVRLAGLIANRTDK 184 (267)
T ss_pred cCCEEEEeCCCCccc-ccchhhhhhcCEEEEEecCCcccHHHHHHHHHHHHHHhhccCCceEEEEEeCCCH
Confidence 578999999986321 1234558899999999877532212222222222 12355544 68999984
No 386
>KOG0410|consensus
Probab=93.32 E-value=0.13 Score=42.44 Aligned_cols=101 Identities=20% Similarity=0.063 Sum_probs=60.2
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCEE
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~~ 68 (161)
||||++++..+.. +..--.|.+........ ..+..+.+.||-|+-. -...+......+|.+
T Consensus 188 NaGKsTLikaLT~Aal~p~drLFATLDpT~h~a~L------psg~~vlltDTvGFisdLP~~LvaAF~ATLeeVaeadll 261 (410)
T KOG0410|consen 188 NAGKSTLIKALTKAALYPNDRLFATLDPTLHSAHL------PSGNFVLLTDTVGFISDLPIQLVAAFQATLEEVAEADLL 261 (410)
T ss_pred CccHHHHHHHHHhhhcCccchhheeccchhhhccC------CCCcEEEEeechhhhhhCcHHHHHHHHHHHHHHhhcceE
Confidence 8999998765531 11112223322221111 1245789999999732 122344555678999
Q ss_pred EEEEeCCCCC-ChhHHHHHHHHHHcCCC-------cEEEEECCcchhh
Q psy2609 69 IIVVDCVEGI-CAQTQVALKQAWLEKIQ-------PILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~-~~~~~~~~~~~~~~~~p-------~ilv~NK~Dl~~~ 108 (161)
+-|+|.+.+. ..|.+..+..+...++| +|=|=||+|....
T Consensus 262 lHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~ 309 (410)
T KOG0410|consen 262 LHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEED 309 (410)
T ss_pred EEEeecCCccHHHHHHHHHHHHHhcCCCcHHHHhHHHhhccccccccc
Confidence 9999998654 34445556666666665 3457888887643
No 387
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=93.30 E-value=0.088 Score=40.75 Aligned_cols=74 Identities=11% Similarity=-0.098 Sum_probs=40.8
Q ss_pred ccccccccCCchhHH---HcCCccccceE-EEEeecCCCCCCceeEEEEeCCCchh------hHHHHHHHHHh--cCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ---ERGITMKSSSI-SLYYKDNKDTPEEYLINLIDSPGHVD------FSSEVSTAVRL--CDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~---~~giti~~~~~-~~~~~~~~~~~~~~~i~iiDTpG~~~------~~~~~~~~l~~--~d~~i 69 (161)
++||+++++.+-... .-+-+....+. -+.|...-..+++..+.++||||... .......++.. ++++|
T Consensus 17 ~sGKS~llN~l~~~~~~f~~~~~~~~~T~gi~~~~~~~~~~~~~~v~~lDteG~~~~~~~~~~~~~~~~~l~~llss~~i 96 (224)
T cd01851 17 SSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDGRERGEFEDDARLFALATLLSSVLI 96 (224)
T ss_pred CCCHHHHHHHHhCCCCCeEecCCCCCCccceEEEeccccCCCcceEEEEecCCcCccccCchhhhhHHHHHHHHHhCEEE
Confidence 578999987765431 00111111111 11222111112457999999999753 23345556665 89999
Q ss_pred EEEeCC
Q psy2609 70 IVVDCV 75 (161)
Q Consensus 70 lVvd~~ 75 (161)
+.++..
T Consensus 97 ~n~~~~ 102 (224)
T cd01851 97 YNSWET 102 (224)
T ss_pred EeccCc
Confidence 888875
No 388
>PRK10867 signal recognition particle protein; Provisional
Probab=93.20 E-value=0.5 Score=40.32 Aligned_cols=63 Identities=22% Similarity=0.341 Sum_probs=35.3
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcc
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAVR--LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l~--~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 105 (161)
.+.++|+||||... .......... ..+.+++|+|+..+ ........... ..+++ -+++||+|-
T Consensus 183 ~~DvVIIDTaGrl~~d~~lm~eL~~i~~~v~p~evllVlda~~g--q~av~~a~~F~-~~~~i~giIlTKlD~ 252 (433)
T PRK10867 183 GYDVVIVDTAGRLHIDEELMDELKAIKAAVNPDEILLVVDAMTG--QDAVNTAKAFN-EALGLTGVILTKLDG 252 (433)
T ss_pred CCCEEEEeCCCCcccCHHHHHHHHHHHHhhCCCeEEEEEecccH--HHHHHHHHHHH-hhCCCCEEEEeCccC
Confidence 46799999999532 2222222222 45788999998632 22222222221 23444 477899994
No 389
>TIGR03018 pepcterm_TyrKin exopolysaccharide/PEPCTERM locus tyrosine autokinase. Members of this protein family are related to a known protein-tyrosine autokinase and to numerous homologs from exopolysaccharide biosynthesis region proteins, many of which are designated as chain length determinants. Most members of this family contain a short region, immediately C-terminal to the region modeled here, with an abundance of Tyr residues. These C-terminal tyrosine residues are likely to be autophosphorylation sites. Some members of this family are fusion proteins.
Probab=93.12 E-value=0.53 Score=35.68 Aligned_cols=57 Identities=28% Similarity=0.320 Sum_probs=36.0
Q ss_pred eEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEE
Q psy2609 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLN 101 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~N 101 (161)
-++++|||..... ..+...+..+|.+|+|+.............+..++ +.+++ +|+|
T Consensus 150 D~IiiD~pp~~~~-~~~~~l~~~aD~viiV~~~~~~~~~~~~~~~~~l~--~~~~~G~v~N 207 (207)
T TIGR03018 150 RIIIIDTPPLLVF-SEARALARLVGQIVLVVEEGRTTQEAVKEALSALE--SCKVLGVVLN 207 (207)
T ss_pred CEEEEECCCCcch-hHHHHHHHhCCEEEEEEECCCCCHHHHHHHHHHhc--CCCeEEEEeC
Confidence 5899999876432 23444456789999999887554444455555554 55665 4444
No 390
>PRK09563 rbgA GTPase YlqF; Reviewed
Probab=92.85 E-value=0.03 Score=44.89 Aligned_cols=41 Identities=17% Similarity=0.230 Sum_probs=27.0
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCch
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV 52 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~ 52 (161)
|+||+++++.+...+ .+|+|.... +... +.++.++||||..
T Consensus 131 nvGKSsliN~l~~~~~~~~~~~~g~T~~~~---~~~~-------~~~~~l~DtPGi~ 177 (287)
T PRK09563 131 NVGKSTLINRLAGKKIAKTGNRPGVTKAQQ---WIKL-------GKGLELLDTPGIL 177 (287)
T ss_pred CCCHHHHHHHHhcCCccccCCCCCeEEEEE---EEEe-------CCcEEEEECCCcC
Confidence 789999988875443 356665532 1111 2368899999974
No 391
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.81 E-value=0.51 Score=41.43 Aligned_cols=65 Identities=17% Similarity=0.212 Sum_probs=36.3
Q ss_pred ceeEEEEeCCCchhhHHHHH---HHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVS---TAVR--LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~---~~l~--~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.+.++||||||......... ..+. .....++|++++.+...... .++.... ..+.-+++||+|..
T Consensus 428 ~~DLVLIDTaG~s~~D~~l~eeL~~L~aa~~~a~lLVLpAtss~~Dl~e-ii~~f~~-~~~~gvILTKlDEt 497 (559)
T PRK12727 428 DYKLVLIDTAGMGQRDRALAAQLNWLRAARQVTSLLVLPANAHFSDLDE-VVRRFAH-AKPQGVVLTKLDET 497 (559)
T ss_pred cCCEEEecCCCcchhhHHHHHHHHHHHHhhcCCcEEEEECCCChhHHHH-HHHHHHh-hCCeEEEEecCcCc
Confidence 57899999999643211101 1111 12356788888754433332 2232222 23567999999974
No 392
>PRK11670 antiporter inner membrane protein; Provisional
Probab=92.69 E-value=0.4 Score=40.01 Aligned_cols=67 Identities=9% Similarity=-0.006 Sum_probs=42.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-+.++|||..-.....+...+-.+|++++|.-............+....+.++|++ +|.|+.+..
T Consensus 215 ~yDyvIID~PPg~gd~~l~~~~l~aad~viiV~tp~~~s~~da~~~i~~~~~~~~~ilGiV~Nm~~~~ 282 (369)
T PRK11670 215 DLDYLVLDMPPGTGDIQLTLAQNIPVTGAVVVTTPQDIALIDAKKGIVMFEKVEVPVLGIVENMSMHI 282 (369)
T ss_pred cCCEEEEeCCCCCchHHHHHhhhccCCeEEEEecCchhHHHHHHHHHHHHhccCCCeEEEEEcCCccc
Confidence 5779999998753322234445556899999886643222223334455555688876 789998743
No 393
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.68 E-value=0.57 Score=39.90 Aligned_cols=63 Identities=29% Similarity=0.451 Sum_probs=34.9
Q ss_pred ceeEEEEeCCCchh----hHHHHHHH--HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTA--VRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~--l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
.+.+.|+||+|-.. +..+.... .-..|-+++|+|+.-| |+...........+++- ++++|+|-
T Consensus 182 ~~DvvIvDTAGRl~ide~Lm~El~~Ik~~~~P~E~llVvDam~G---QdA~~~A~aF~e~l~itGvIlTKlDG 251 (451)
T COG0541 182 GYDVVIVDTAGRLHIDEELMDELKEIKEVINPDETLLVVDAMIG---QDAVNTAKAFNEALGITGVILTKLDG 251 (451)
T ss_pred CCCEEEEeCCCcccccHHHHHHHHHHHhhcCCCeEEEEEecccc---hHHHHHHHHHhhhcCCceEEEEcccC
Confidence 46899999999543 33332222 2235789999999743 23222222223344543 55666663
No 394
>PRK10818 cell division inhibitor MinD; Provisional
Probab=92.63 E-value=0.57 Score=36.75 Aligned_cols=65 Identities=17% Similarity=0.193 Sum_probs=41.8
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH-------c--CCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL-------E--KIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-------~--~~p~ilv~NK~Dl~ 106 (161)
.+-++++|||+... ......+..+|.+++++++....-.....++..+.. . +.+..+++|+++..
T Consensus 113 ~yd~viiD~p~~~~--~~~~~~l~~ad~vivv~~p~~~sl~~~~~~l~~i~~~~~~~~~~~~~~~~~vv~n~~~~~ 186 (270)
T PRK10818 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (270)
T ss_pred CCCEEEEeCCCCcc--HHHHHHHHhCCeEEEEcCCCchHHHhHHHHHHHHHHhhccccccccccceEEEEeccCHh
Confidence 57899999988653 345667899999999998873322222333333321 1 22346788998853
No 395
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=92.50 E-value=0.45 Score=43.12 Aligned_cols=66 Identities=12% Similarity=-0.008 Sum_probs=45.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-+++||||+..... .+......+|++|+|+.............++.+...+.+++ +|+|++|..
T Consensus 655 ~yD~IiID~pp~~~~~-d~~~l~~~~D~vl~v~~~~~~~~~~~~~~~~~l~~~~~~~~GvvlN~~~~~ 721 (754)
T TIGR01005 655 YSDCVVVDVGTADPVR-DMRAAARLAIIMLLVTAYDRVVVECGRADAQGISRLNGEVTGVFLNMLDPN 721 (754)
T ss_pred hCCEEEEcCCCcchhH-HHHHhhhhCCeEEEEEEeCceeHHHHHHHHHHHHhcCCceEEEEecCCChh
Confidence 5789999999975432 23334457899999988654444445556666666676665 899999854
No 396
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=92.50 E-value=0.062 Score=42.84 Aligned_cols=40 Identities=20% Similarity=0.246 Sum_probs=25.7
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCc
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH 51 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~ 51 (161)
|+||+++++.+... ..+|+|...... .. ...+.++||||.
T Consensus 128 nvGKSslin~l~~~~~~~~~~~~g~T~~~~~~--~~--------~~~~~l~DtPG~ 173 (276)
T TIGR03596 128 NVGKSTLINRLAGKKVAKVGNRPGVTKGQQWI--KL--------SDGLELLDTPGI 173 (276)
T ss_pred CCCHHHHHHHHhCCCccccCCCCCeecceEEE--Ee--------CCCEEEEECCCc
Confidence 78999998776533 245556543211 11 226899999998
No 397
>KOG1707|consensus
Probab=92.35 E-value=0.18 Score=44.29 Aligned_cols=47 Identities=23% Similarity=0.141 Sum_probs=31.1
Q ss_pred HhcCEEEEEEeCCCCCChhHHH-HH-HHHHHcCCCcEEEEECCcchhhh
Q psy2609 63 RLCDGTIIVVDCVEGICAQTQV-AL-KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 63 ~~~d~~ilVvd~~~~~~~~~~~-~~-~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+|++.++||........... .. ..-...+.|+++|..|+|+-...
T Consensus 494 ~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~ 542 (625)
T KOG1707|consen 494 AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVP 542 (625)
T ss_pred ceeeeEEEecccCCchHHHHHHHHHHHhhhccCCceEEEeeccccchhh
Confidence 6789999999988443322211 11 11122689999999999996543
No 398
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=92.12 E-value=0.46 Score=38.53 Aligned_cols=63 Identities=16% Similarity=0.076 Sum_probs=40.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 104 (161)
.+.++++|||+... ..+...+..+|.+++|++.+...-.....+++.+...+..+-+++|+..
T Consensus 204 ~~D~VIID~p~~~~--~~~~~~L~~AD~vliV~~~~~~sl~~a~r~l~~l~~~~~~~~lVv~~~~ 266 (322)
T TIGR03815 204 GGDLVVVDLPRRLT--PAAETALESADLVLVVVPADVRAVAAAARVCPELGRRNPDLRLVVRGPA 266 (322)
T ss_pred cCCEEEEeCCCCCC--HHHHHHHHHCCEEEEEcCCcHHHHHHHHHHHHHHhhhCCCeEEEEeCCC
Confidence 47899999999753 4477889999999999977532222223344444444434456677643
No 399
>PRK09841 cryptic autophosphorylating protein tyrosine kinase Etk; Provisional
Probab=92.04 E-value=0.7 Score=41.89 Aligned_cols=65 Identities=12% Similarity=0.211 Sum_probs=45.6
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
.+-++|+|||..-..... ......+|++|+|+.............++.+...+.+++ +|+|+++.
T Consensus 640 ~yD~IIIDtPP~~~~~Da-~~la~~ad~~llVvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~~~~ 705 (726)
T PRK09841 640 HYDLVIVDTPPMLAVSDA-AVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIK 705 (726)
T ss_pred cCCEEEEeCCCccccchH-HHHHHhCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCceEEEEEeCccc
Confidence 477999999986543222 333467899999987654444445556666667788877 88999984
No 400
>PRK13185 chlL protochlorophyllide reductase iron-sulfur ATP-binding protein; Provisional
Probab=92.03 E-value=0.4 Score=37.67 Aligned_cols=65 Identities=15% Similarity=0.111 Sum_probs=38.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH----HHcCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQA----WLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~----~~~~~p~i-lv~NK~Dl 105 (161)
.+-+.||||||.-... .+...+..||.+|+++.+....-.....++..+ ...+++++ ++.|+.+.
T Consensus 117 ~yD~viIDt~g~~~~~-~~~~~l~~AD~viip~~~~~~sl~~~~~~~~~i~~~~~~~~l~i~giv~N~~~~ 186 (270)
T PRK13185 117 DYDVILFDVLGDVVCG-GFAAPLQYADYALIVTANDFDSIFAANRIAAAIQAKAKNYKVRLAGVIANRSAG 186 (270)
T ss_pred cCCEEEEecCCCcccC-cccchhhhCcEEEEEecCchhhHHHHHHHHHHHHhhhhccCCCceEEEEeccCh
Confidence 5789999999863211 234558889999999976422111112222222 23456654 78999774
No 401
>COG1162 Predicted GTPases [General function prediction only]
Probab=91.86 E-value=0.72 Score=37.47 Aligned_cols=53 Identities=36% Similarity=0.288 Sum_probs=35.7
Q ss_pred HHHHHHHhcCEEEEEEeCCCCCC--hhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 57 EVSTAVRLCDGTIIVVDCVEGIC--AQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 57 ~~~~~l~~~d~~ilVvd~~~~~~--~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+.-..+.|-+++|+.+..+.. ......+-.+...++..++|+||+||...+
T Consensus 72 L~Rp~v~n~d~~iiIvs~~~P~~~~~~ldR~Lv~ae~~gi~pvIvlnK~DL~~~~ 126 (301)
T COG1162 72 LIRPPVANNDQAIIVVSLVDPDFNTNLLDRYLVLAEAGGIEPVIVLNKIDLLDDE 126 (301)
T ss_pred eeCCcccccceEEEEEeccCCCCCHHHHHHHHHHHHHcCCcEEEEEEccccCcch
Confidence 34444455788888888775432 222344555667799999999999998654
No 402
>PRK11519 tyrosine kinase; Provisional
Probab=91.73 E-value=0.89 Score=41.17 Aligned_cols=65 Identities=22% Similarity=0.276 Sum_probs=47.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
.+-++|+|||..-.. ..+....+.+|++++|+.............++.+...+.+++ +|+|+++.
T Consensus 635 ~yD~ViiDtpP~~~v-~Da~~l~~~~d~~l~Vvr~~~t~~~~~~~~~~~l~~~~~~~~G~VlN~v~~ 700 (719)
T PRK11519 635 NYDLVLIDTPPILAV-TDAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFR 700 (719)
T ss_pred cCCEEEEeCCCcccc-hHHHHHHHHCCeEEEEEeCCCCCHHHHHHHHHHHHhCCCCeEEEEEeCCcc
Confidence 578999999986432 234455678999999998765444445556666777789988 89999974
No 403
>PRK13796 GTPase YqeH; Provisional
Probab=91.20 E-value=0.059 Score=44.82 Aligned_cols=41 Identities=22% Similarity=0.197 Sum_probs=25.7
Q ss_pred ccccccccCCchhH-----------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCch
Q psy2609 2 LCMVSSYMDSRKDE-----------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV 52 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~ 52 (161)
|+||+++++.+... ..+|.|.+...+. +. -...++||||..
T Consensus 170 NvGKSTLiN~L~~~~~~~~~~~~~s~~pGTT~~~~~~~--l~--------~~~~l~DTPGi~ 221 (365)
T PRK13796 170 NVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIP--LD--------DGSFLYDTPGII 221 (365)
T ss_pred CCcHHHHHHHHHhhccCccceEEecCCCCccceeEEEE--cC--------CCcEEEECCCcc
Confidence 89999999888532 2345565533222 21 124799999974
No 404
>COG0455 flhG Antiactivator of flagellar biosynthesis FleN, an ATPase [Cell motility]
Probab=91.17 E-value=1.8 Score=34.44 Aligned_cols=82 Identities=21% Similarity=0.169 Sum_probs=50.4
Q ss_pred eeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc---EEEEECCcchhhhhcCChHHH
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP---ILVLNKIDRLILEMKLSPLDI 117 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~---ilv~NK~Dl~~~~~~~~~~~~ 117 (161)
+-+.++|||+-- ...+...+..+|.+|+|.......-.......+++...+.+. .+++|+++-... ..+.
T Consensus 113 ~D~iliD~~aGl--~~~~~~~~~~sd~~viVt~pe~~si~~A~~~i~~~~~~~~~~~~~~vV~N~v~~~~e-----~~~~ 185 (262)
T COG0455 113 YDYILIDTGAGL--SRDTLSFILSSDELVIVTTPEPTSITDAYKTIKILSKLGLDLLGRRVVLNRVRSTKE-----GVDV 185 (262)
T ss_pred CCEEEEeCCCCc--cHHHHHHHHhcCcEEEEeCCCcchHHHHHHHHHHHHHcCCccccceEEEEecccccc-----hhHH
Confidence 478999999853 334455666669999999765322233344456666666664 389999983322 2334
Q ss_pred HHhHHHHHHHHH
Q psy2609 118 YVHLSQLLEQVN 129 (161)
Q Consensus 118 ~~~l~~~~~~~~ 129 (161)
...+.++..+++
T Consensus 186 ~~~~~~~~~~~~ 197 (262)
T COG0455 186 AALLIQVVKQVP 197 (262)
T ss_pred HHHHHHHHHhCC
Confidence 445555666655
No 405
>cd02042 ParA ParA and ParB of Caulobacter crescentus belong to a conserved family of bacterial proteins implicated in chromosome segregation. ParB binds to DNA sequences adjacent to the origin of replication and localizes to opposite cell poles shortly following the initiation of DNA replication. ParB regulates the ParA ATPase activity by promoting nucleotide exchange in a fashion reminiscent of the exchange factors of eukaryotic G proteins. ADP-bound ParA binds single-stranded DNA, whereas the ATP-bound form dissociates ParB from its DNA binding sites. Increasing the fraction of ParA-ADP in the cell inhibits cell division, suggesting that this simple nucleotide switch may regulate cytokinesis. ParA shares sequence similarity to a conserved and widespread family of ATPases which includes the repA protein of the repABC operon in R. etli Sym plasmid. This operon is involved in the plasmid replication and partition.
Probab=91.02 E-value=0.99 Score=29.91 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=27.9
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.+.+.++|+|+... ......+..+|.++++++.+.
T Consensus 39 ~~d~viiD~p~~~~--~~~~~~l~~ad~viv~~~~~~ 73 (104)
T cd02042 39 QYDYIIIDTPPSLG--LLTRNALAAADLVLIPVQPSP 73 (104)
T ss_pred CCCEEEEeCcCCCC--HHHHHHHHHCCEEEEeccCCH
Confidence 37899999999743 334588899999999998863
No 406
>KOG3887|consensus
Probab=90.96 E-value=0.63 Score=37.08 Aligned_cols=70 Identities=19% Similarity=0.278 Sum_probs=44.0
Q ss_pred eeEEEEeCCCchhhHHH---HHHHHHhcCEEEEEEeCCCCCChh-HHHHHHHHHH----cCCCcEEEEECCcchhhhh
Q psy2609 41 YLINLIDSPGHVDFSSE---VSTAVRLCDGTIIVVDCVEGICAQ-TQVALKQAWL----EKIQPILVLNKIDRLILEM 110 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~---~~~~l~~~d~~ilVvd~~~~~~~~-~~~~~~~~~~----~~~p~ilv~NK~Dl~~~~~ 110 (161)
..+.+||-||+-.+..- -...++++-+.++|+|+.+..... ...+....+. .++.+=+++-|.|-...+.
T Consensus 75 inf~v~dfPGQ~~~Fd~s~D~e~iF~~~gALifvIDaQddy~eala~L~~~v~raykvNp~in~EVfiHKvDGLsdd~ 152 (347)
T KOG3887|consen 75 INFQVWDFPGQMDFFDPSFDYEMIFRGVGALIFVIDAQDDYMEALARLHMTVERAYKVNPNINFEVFIHKVDGLSDDF 152 (347)
T ss_pred cceEEeecCCccccCCCccCHHHHHhccCeEEEEEechHHHHHHHHHHHHHhhheeecCCCceEEEEEEeccCCchhh
Confidence 46889999999765432 445678889999999997533211 1112222222 2344457899999766543
No 407
>COG1161 Predicted GTPases [General function prediction only]
Probab=90.78 E-value=0.069 Score=43.69 Aligned_cols=40 Identities=25% Similarity=0.254 Sum_probs=26.8
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCc
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH 51 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~ 51 (161)
|+||+++++.+.... .+|+|.....+.+ ...+.++||||.
T Consensus 142 NVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~----------~~~i~LlDtPGi 187 (322)
T COG1161 142 NVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKL----------DDGIYLLDTPGI 187 (322)
T ss_pred CCcHHHHHHHHhcccceeeCCCCceecceEEEEc----------CCCeEEecCCCc
Confidence 789999988776544 4566654332222 335899999996
No 408
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=90.45 E-value=0.061 Score=38.25 Aligned_cols=10 Identities=50% Similarity=0.773 Sum_probs=9.0
Q ss_pred eEEEEeCCCc
Q psy2609 42 LINLIDSPGH 51 (161)
Q Consensus 42 ~i~iiDTpG~ 51 (161)
.+.+|||||.
T Consensus 129 ~~~i~DtpG~ 138 (141)
T cd01857 129 TITLCDCPGL 138 (141)
T ss_pred CEEEEECCCc
Confidence 6899999996
No 409
>KOG0780|consensus
Probab=90.09 E-value=1.6 Score=36.96 Aligned_cols=40 Identities=20% Similarity=0.352 Sum_probs=26.3
Q ss_pred CCceeEEEEeCCCchhhHHH----HHHHHH--hcCEEEEEEeCCCC
Q psy2609 38 PEEYLINLIDSPGHVDFSSE----VSTAVR--LCDGTIIVVDCVEG 77 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~~----~~~~l~--~~d~~ilVvd~~~~ 77 (161)
.+++-++|+||.|-+.-... +..... ..|-+|+|.|+.-|
T Consensus 181 ke~fdvIIvDTSGRh~qe~sLfeEM~~v~~ai~Pd~vi~VmDasiG 226 (483)
T KOG0780|consen 181 KENFDVIIVDTSGRHKQEASLFEEMKQVSKAIKPDEIIFVMDASIG 226 (483)
T ss_pred hcCCcEEEEeCCCchhhhHHHHHHHHHHHhhcCCCeEEEEEecccc
Confidence 45788999999996543222 222211 25899999999854
No 410
>TIGR01281 DPOR_bchL light-independent protochlorophyllide reductase, iron-sulfur ATP-binding protein. The BchL peptide (ChlL in chloroplast and cyanobacteria) is an ATP-binding iron-sulfur protein of the dark form protochlorophyllide reductase, an enzyme similar to nitrogenase. This subunit resembles the nitrogenase NifH subunit.
Probab=89.57 E-value=0.8 Score=35.91 Aligned_cols=65 Identities=15% Similarity=0.114 Sum_probs=37.3
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHH----HcCCCc-EEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAW----LEKIQP-ILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~----~~~~p~-ilv~NK~Dl 105 (161)
.+.++++||||.-... .+...+..||.+++++......-.....+++.+. ..++++ .+|+|+++.
T Consensus 115 ~yD~ViID~~~~~~~~-~~~~~l~aAD~vlip~~~~~~sl~~~~~l~~~i~~~~~~~~l~~~gIV~N~~~~ 184 (268)
T TIGR01281 115 DYDVILFDVLGDVVCG-GFATPLQYADYALVVAANDFDALFAANRIAASVQEKAKNYDVRLAGIIGNRSDA 184 (268)
T ss_pred cCCEEEEecCCccccC-ccccchhhcCEEEEEecCchhHHHHHHHHHHHHHHHhhcCCCceEEEEEeCCCh
Confidence 5889999999853211 1224578899999988654211111122222222 234554 378899975
No 411
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=89.38 E-value=0.11 Score=43.02 Aligned_cols=42 Identities=19% Similarity=0.182 Sum_probs=25.8
Q ss_pred ccccccccCCchhH-----------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh
Q psy2609 2 LCMVSSYMDSRKDE-----------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD 53 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~ 53 (161)
|+|||++++.+... ..+|.|.+... +.. ...+.++||||...
T Consensus 164 nvGKStliN~l~~~~~~~~~~~~~s~~pgtT~~~~~--~~~--------~~~~~l~DtPG~~~ 216 (360)
T TIGR03597 164 NVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIE--IPL--------DDGHSLYDTPGIIN 216 (360)
T ss_pred CCCHHHHHHHHHhhccCCcceeeecCCCCeEeeEEE--EEe--------CCCCEEEECCCCCC
Confidence 89999998887553 23454543221 111 12467999999754
No 412
>PRK10037 cell division protein; Provisional
Probab=89.30 E-value=1.5 Score=34.09 Aligned_cols=58 Identities=17% Similarity=0.304 Sum_probs=39.7
Q ss_pred CceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc-CCCcEEEEECCc
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLE-KIQPILVLNKID 104 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~-~~p~ilv~NK~D 104 (161)
+.+.+.|||||+.. ...+..++..||.+|+++.+.. ...++..... +....+++|+++
T Consensus 116 ~~yD~iiIDtpp~~--~~~~~~al~aaD~vlvpv~~~~------~~~i~~~~~~~~~~~~i~~n~~~ 174 (250)
T PRK10037 116 GRYQWILLDLPRGA--SPLTRQLLSLCDHSLAIVNVDA------NCHIRLHQQALPAGAHILINDLR 174 (250)
T ss_pred CCCCEEEEECCCCc--cHHHHHHHHhCCEEEEEcCcCH------HHHHhhhccccCCCeEEEEecCC
Confidence 46889999999974 4568889999999999997641 1122322222 334456789886
No 413
>KOG1534|consensus
Probab=89.15 E-value=0.64 Score=36.28 Aligned_cols=67 Identities=18% Similarity=0.249 Sum_probs=41.4
Q ss_pred eeEEEEeCCCchh------hHHHHHHHHHhcC---EEEEEEeCCCCCChhHHHH------HHHHHHcCCCcEEEEECCcc
Q psy2609 41 YLINLIDSPGHVD------FSSEVSTAVRLCD---GTIIVVDCVEGICAQTQVA------LKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 41 ~~i~iiDTpG~~~------~~~~~~~~l~~~d---~~ilVvd~~~~~~~~~~~~------~~~~~~~~~p~ilv~NK~Dl 105 (161)
-.+.++|+||+-. ..++....+..-+ ++++++|+.- +...+..+ +.......+|.|=|+.||||
T Consensus 98 ddylifDcPGQIELytH~pVm~~iv~hl~~~~F~~c~Vylldsqf-~vD~~KfiSG~lsAlsAMi~lE~P~INvlsKMDL 176 (273)
T KOG1534|consen 98 DDYLIFDCPGQIELYTHLPVMPQIVEHLKQWNFNVCVVYLLDSQF-LVDSTKFISGCLSALSAMISLEVPHINVLSKMDL 176 (273)
T ss_pred CCEEEEeCCCeeEEeecChhHHHHHHHHhcccCceeEEEEeccch-hhhHHHHHHHHHHHHHHHHHhcCcchhhhhHHHH
Confidence 3688999999744 2444555555422 6778888641 11222221 22233458999999999999
Q ss_pred hhh
Q psy2609 106 LIL 108 (161)
Q Consensus 106 ~~~ 108 (161)
.+.
T Consensus 177 lk~ 179 (273)
T KOG1534|consen 177 LKD 179 (273)
T ss_pred hhh
Confidence 864
No 414
>COG4963 CpaE Flp pilus assembly protein, ATPase CpaE [Intracellular trafficking and secretion]
Probab=89.13 E-value=1.8 Score=36.20 Aligned_cols=108 Identities=15% Similarity=0.183 Sum_probs=66.6
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH---cCCCcEEEEECCcchhhhhcCChHH
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL---EKIQPILVLNKIDRLILEMKLSPLD 116 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~~~~~~~~~~ 116 (161)
.+.++++|-| .-+...+...+..+|.+++|++.+-..-....+++..+++ ...+..+++||....... +
T Consensus 217 ~~~~vV~Dlp--~~~~~~t~~vL~~Sd~iviv~e~sl~slR~ak~lld~l~~~r~~~~~p~lv~n~~~~~~~~---~--- 288 (366)
T COG4963 217 SFDFVVVDLP--NIWTDWTRQVLSGSDEIVIVAEPSLASLRNAKELLDELKRLRPNDPKPILVLNRVGVPKRP---E--- 288 (366)
T ss_pred cCCeEEEcCC--CccchHHHHHHhcCCeEEEEecccHHHHHHHHHHHHHHHHhCCCCCCceEEeeecCCCCCC---C---
Confidence 5679999999 5677889999999999999998764433444555555544 356678999999865433 1
Q ss_pred HHHhHHHHHHHHHhhhhhhchhhhhhhhhccCCCCccchhhc
Q psy2609 117 IYVHLSQLLEQVNAVMGELFASQVMDETAVKTTAQDNETKQT 158 (161)
Q Consensus 117 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (161)
.+++....+ ++....-.|...-+... .|.+...-|.+-.
T Consensus 289 -~~dl~~~~~-i~~~~~~p~d~~~~~~A-~n~g~~l~E~~~~ 327 (366)
T COG4963 289 -PSDLEEILG-IESLLVLPFDPALFGDA-ANNGRMLSEVDPG 327 (366)
T ss_pred -HHHHHHHhC-CchhccccCCchhhhhh-hccCccccccCCC
Confidence 112222222 23333334554444444 5555555555543
No 415
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=88.91 E-value=0.14 Score=38.88 Aligned_cols=59 Identities=31% Similarity=0.272 Sum_probs=34.8
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc--EEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP--ILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~--ilv~NK~Dl~~ 107 (161)
..-..++.|.|..-.. .... ..+|.+|+|+|+..+...... ...++.. ++++||+|+..
T Consensus 91 ~~D~iiIEt~G~~l~~-~~~~--~l~~~~i~vvD~~~~~~~~~~------~~~qi~~ad~~~~~k~d~~~ 151 (199)
T TIGR00101 91 PLEMVFIESGGDNLSA-TFSP--ELADLTIFVIDVAAGDKIPRK------GGPGITRSDLLVINKIDLAP 151 (199)
T ss_pred CCCEEEEECCCCCccc-ccch--hhhCcEEEEEEcchhhhhhhh------hHhHhhhccEEEEEhhhccc
Confidence 3467788898831100 0111 226889999999865432111 1123344 89999999974
No 416
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.80 E-value=1.9 Score=34.43 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=37.4
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHHHh--cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAVRL--CDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l~~--~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~ 107 (161)
++.+.|+||||... ........+.. .+-.++|+|++..... ...+++... .+++ =++++|.|-..
T Consensus 154 ~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d-~~~~~~~f~--~~~~~~~I~TKlDet~ 225 (270)
T PRK06731 154 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFK--DIHIDGIVFTKFDETA 225 (270)
T ss_pred CCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH-HHHHHHHhC--CCCCCEEEEEeecCCC
Confidence 56899999999642 23333333332 4578999998743222 122222221 2333 48899999753
No 417
>CHL00072 chlL photochlorophyllide reductase subunit L
Probab=88.63 E-value=1.1 Score=35.98 Aligned_cols=65 Identities=22% Similarity=0.177 Sum_probs=37.8
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH----cCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL----EKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~----~~~p~i-lv~NK~Dl 105 (161)
.+-+.++||||.-.. .....++..||.+|+++.+....-.....+.+.+.. .+++.. +++|+.+.
T Consensus 115 ~yD~IiIDt~~~l~~-~a~~aal~~AD~viIp~~p~~~sl~~~~~l~~~i~~~~~~~~l~~~gvv~n~~~~ 184 (290)
T CHL00072 115 EYDIILFDVLGDVVC-GGFAAPLNYADYCIIITDNGFDALFAANRIAASVREKARTHPLRLAGLVGNRTSK 184 (290)
T ss_pred cCCEEEEecCCccee-chhhhhhhcCCEEEEEecCCHHHHHHHHHHHHHHHHHhccCCCceEEEEEeCCCc
Confidence 578999999986211 123355788999999997753211122223322222 233443 78899873
No 418
>cd02117 NifH_like This family contains the NifH (iron protein) of nitrogenase, L subunit (BchL/ChlL) of the protochlorophyllide reductase and the BchX subunit of the Chlorophyllide reductase. Members of this family use energey from ATP hydrolysis and transfer electrons through a Fe4-S4 cluster to other subunit for reduction of substrate.
Probab=88.34 E-value=0.7 Score=35.05 Aligned_cols=66 Identities=15% Similarity=-0.016 Sum_probs=37.2
Q ss_pred ceeEEEEeCCCchhhHHH-HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc----CCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSE-VSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLE----KIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~-~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~----~~p~i-lv~NK~Dl 105 (161)
.+-++++||||..-.... ...+.+.||.+++++..+...-.....+++.+... +.++. ++.||++.
T Consensus 116 ~yD~ilID~~g~~~~~~~~~~l~~~~ad~vliv~~p~~~sl~~~~~l~~~i~~~~~~~~~~~~gvv~N~~~~ 187 (212)
T cd02117 116 DLDVVLYDVLGDVVCGGFAMPIREGKADEIYIVTSGEFMALYAANNICKGIRKYAKSGGVRLGGLICNSRNT 187 (212)
T ss_pred CCCEEEEecCCCceecccccccccccCcEEEEEecccHHHHHHHHHHHHHHHHhCcccCCcEEEEEEeCCCC
Confidence 688999999885421111 01112479999999987522111122333333322 44443 89999985
No 419
>cd00550 ArsA_ATPase Oxyanion-translocating ATPase (ArsA). This ATPase is involved in transport of arsenite, antimonite or other oxyanions across biological membranes in all three kingdoms of life. ArsA contains a highly conserved AAA motif present in the AAA+ ATPase superfamily associated with a variety of cellular activities. To form a functional ATP-driven pump, ArsA interacts with the permease ArsB, which is a channel-forming integral membrane protein. One of the most interesting features of ArsA is the allosteric activation by its transport substrates. A divalent cation, typically Mg2+, is required for its enzymatic activity.
Probab=87.11 E-value=3.1 Score=32.63 Aligned_cols=67 Identities=13% Similarity=0.007 Sum_probs=44.0
Q ss_pred ceeEEEEeCCCchh---hHHHH------HHHHHh--cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVD---FSSEV------STAVRL--CDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~---~~~~~------~~~l~~--~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.+-++++|||.-.. +.... ...+.. .+.+++|.....-........+..+...++|+ -+|+||+.-.
T Consensus 124 ~yD~VVvDtpPtg~tlrlL~lp~~l~~~~~~l~d~~~~~~vlV~~p~~~~~~e~~r~~~~L~~~g~~v~gvV~N~v~~~ 202 (254)
T cd00550 124 EYDVVVFDTAPTGHTLRLLSLPTVLSWAREILSDPERTSFRLVCIPEKMSLYETERAIQELAKYGIDVDAVIVNQLLPE 202 (254)
T ss_pred CCCEEEECCCCcHHHHHHHHhHHHHHHHHHHhcCCcceEEEEEeCCChhHHHHHHHHHHHHHHCCCCCCEEEEecCccc
Confidence 67899999997422 11111 122332 34788888776544455667777788888887 4899998653
No 420
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=87.11 E-value=4 Score=31.95 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=39.9
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC---hhHHHHH-HHHH--HcCCCcEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC---AQTQVAL-KQAW--LEKIQPILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~---~~~~~~~-~~~~--~~~~p~ilv~NK~Dl 105 (161)
.+.+.|+||+|... .....++..+|.+|+-.-.+..-. ..+..++ +..+ ...+|.-++.+++.-
T Consensus 83 ~~d~VlvDleG~as--~~~~~aia~sDlVlIP~~~s~lD~~eA~~t~~~v~~~~~~~~~~ip~~Vl~Tr~~~ 152 (231)
T PF07015_consen 83 GFDFVLVDLEGGAS--ELNDYAIARSDLVLIPMQPSQLDADEAAKTFKWVRRLEKAERRDIPAAVLFTRVPA 152 (231)
T ss_pred CCCEEEEeCCCCCc--hhHHHHHHHCCEEEECCCCChHHHHHHHHHHHHHHHHHHhhCCCCCeeEEEecCCc
Confidence 46899999999653 335667778999887665442111 1112222 2222 347899999999973
No 421
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=86.18 E-value=4.1 Score=34.49 Aligned_cols=63 Identities=19% Similarity=0.086 Sum_probs=35.4
Q ss_pred ceeEEEEeCCCch----hhHHHHHHHHHh--cCEEEEEEeCCCCCChhHHHHHHHHHH-cCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHV----DFSSEVSTAVRL--CDGTIIVVDCVEGICAQTQVALKQAWL-EKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~----~~~~~~~~~l~~--~d~~ilVvd~~~~~~~~~~~~~~~~~~-~~~p~-ilv~NK~Dl~ 106 (161)
.+.++||||||.. ............ .+..++|++++. ...+ +...... ..+++ -++++|+|-.
T Consensus 285 ~~D~VLIDTAGr~~~d~~~l~EL~~l~~~~~p~~~~LVLsag~--~~~d--~~~i~~~f~~l~i~glI~TKLDET 355 (407)
T PRK12726 285 CVDHILIDTVGRNYLAEESVSEISAYTDVVHPDLTCFTFSSGM--KSAD--VMTILPKLAEIPIDGFIITKMDET 355 (407)
T ss_pred CCCEEEEECCCCCccCHHHHHHHHHHhhccCCceEEEECCCcc--cHHH--HHHHHHhcCcCCCCEEEEEcccCC
Confidence 4789999999973 233333443333 356677777642 2222 2222222 23444 5889999974
No 422
>PRK12288 GTPase RsgA; Reviewed
Probab=85.60 E-value=0.26 Score=40.83 Aligned_cols=15 Identities=20% Similarity=-0.020 Sum_probs=11.9
Q ss_pred ccccccccCCchhHH
Q psy2609 2 LCMVSSYMDSRKDEQ 16 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~ 16 (161)
++||+++++.+..+.
T Consensus 215 gVGKSTLiN~Ll~~~ 229 (347)
T PRK12288 215 GVGKSSLINALLPEA 229 (347)
T ss_pred CCCHHHHHHHhcccc
Confidence 689999998886543
No 423
>TIGR00157 ribosome small subunit-dependent GTPase A. The Aquifex aeolicus ortholog is split into consecutive open reading frames. Consequently, this model was build in fragment mode (-f option).
Probab=85.29 E-value=0.34 Score=37.97 Aligned_cols=15 Identities=13% Similarity=-0.066 Sum_probs=11.7
Q ss_pred ccccccccCCchhHH
Q psy2609 2 LCMVSSYMDSRKDEQ 16 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~ 16 (161)
++||+++++.+..+.
T Consensus 130 gvGKStLiN~L~~~~ 144 (245)
T TIGR00157 130 GVGKSSLINALDPSV 144 (245)
T ss_pred CCCHHHHHHHHhhhh
Confidence 689999998876543
No 424
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=85.10 E-value=6 Score=25.82 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=32.5
Q ss_pred EEEEeCCCc-hhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECC
Q psy2609 43 INLIDSPGH-VDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKI 103 (161)
Q Consensus 43 i~iiDTpG~-~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 103 (161)
+.++|+|-- -+-.-.....+. .+++|+|--...-......+....+++.++|++-++--|
T Consensus 3 ~LiiD~PPGTgD~~l~~~~~~~-~~g~ivVTTPq~la~~dv~r~~~~~~~~~vpilGvVENM 63 (81)
T PF10609_consen 3 YLIIDLPPGTGDEHLTLMQYLP-IDGAIVVTTPQELALADVRRAIDMFRKLNVPILGVVENM 63 (81)
T ss_dssp EEEEE--SCSSSHHHHHHHHH---SEEEEEE-CCC--HHHHHHHHHHHHCTT-EEEEEEECT
T ss_pred EEEEeCCCCCCcHHHHHHHhCC-CCeEEEEeCCHHHHHHHHHHHHHHHHhcCCCcEEEEECC
Confidence 568999863 232323334444 688888886654334555667788888899998544333
No 425
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.96 E-value=3.9 Score=34.95 Aligned_cols=64 Identities=17% Similarity=0.195 Sum_probs=35.8
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHHHh-----cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAVRL-----CDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l~~-----~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
++.+++|||||... ........++. ..-.+||+|++.+.... ....... ..+++ =++++|+|-.
T Consensus 299 ~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~-~~~~~~f--~~~~~~glIlTKLDEt 372 (432)
T PRK12724 299 GSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT-LTVLKAY--ESLNYRRILLTKLDEA 372 (432)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH-HHHHHHh--cCCCCCEEEEEcccCC
Confidence 56889999999742 22223333332 22578999998543222 2222211 23343 4778998863
No 426
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.63 E-value=3.1 Score=38.08 Aligned_cols=66 Identities=11% Similarity=0.082 Sum_probs=34.0
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHc-CCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAV--RLCDGTIIVVDCVEGICAQTQVALKQAWLE-KIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l--~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~-~~p~-ilv~NK~Dl~ 106 (161)
++.++||||||.-. ...+..... ...+-.++|+|++.+... -..+....... ..++ =++++|+|-.
T Consensus 263 ~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~-l~~i~~~f~~~~~~~i~glIlTKLDEt 336 (767)
T PRK14723 263 DKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDT-LNEVVHAYRHGAGEDVDGCIITKLDEA 336 (767)
T ss_pred CCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHH-HHHHHHHHhhcccCCCCEEEEeccCCC
Confidence 56799999999321 222222211 123567899999843211 11222211111 1233 4789999964
No 427
>TIGR00347 bioD dethiobiotin synthase. Dethiobiotin synthase is involved in biotin biosynthesis and catalyses the reaction (CO2 + 7,8-diaminononanoate + ATP = dethiobiotin + phosphate + ADP). The enzyme binds ATP (see motif in first 12 residues of the SEED alignment) and requires magnesium as a co-factor.
Probab=84.32 E-value=3.7 Score=29.59 Aligned_cols=12 Identities=33% Similarity=0.346 Sum_probs=5.7
Q ss_pred HHHcCCCcEEEE
Q psy2609 89 AWLEKIQPILVL 100 (161)
Q Consensus 89 ~~~~~~p~ilv~ 100 (161)
+...+.|+|+|+
T Consensus 125 ~~~~~~~vilV~ 136 (166)
T TIGR00347 125 IKLLQLPVILVV 136 (166)
T ss_pred HHHhCCCEEEEE
Confidence 333455555544
No 428
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=84.16 E-value=3.7 Score=35.01 Aligned_cols=65 Identities=15% Similarity=0.043 Sum_probs=37.7
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHHHh--cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAVRL--CDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l~~--~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~ 107 (161)
++.++||||||... ........+.. .+.++||+|++.+... ...+++... .+++ =++++|+|-..
T Consensus 320 ~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d-~~~i~~~F~--~~~idglI~TKLDET~ 391 (436)
T PRK11889 320 RVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD-MIEIITNFK--DIHIDGIVFTKFDETA 391 (436)
T ss_pred CCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH-HHHHHHHhc--CCCCCEEEEEcccCCC
Confidence 46899999999632 23333344332 4678899998643211 122332222 2444 48899999753
No 429
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=84.04 E-value=7.5 Score=32.77 Aligned_cols=64 Identities=14% Similarity=0.222 Sum_probs=38.1
Q ss_pred CceeEEEEeCCCchh----hHHHHHHHHHhc--C-EEEEEEeCCCCCChhHHHHHHHHHHc-CCC-cEEEEECCcch
Q psy2609 39 EEYLINLIDSPGHVD----FSSEVSTAVRLC--D-GTIIVVDCVEGICAQTQVALKQAWLE-KIQ-PILVLNKIDRL 106 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~----~~~~~~~~l~~~--d-~~ilVvd~~~~~~~~~~~~~~~~~~~-~~p-~ilv~NK~Dl~ 106 (161)
.++.++++||||.-. ........+... + -.++|+|++.+..... .+ .... .++ -=++++|.|-.
T Consensus 253 ~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~-~~---~~~~~~~~~~~~I~TKlDet 325 (388)
T PRK12723 253 KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK-EI---FHQFSPFSYKTVIFTKLDET 325 (388)
T ss_pred CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH-HH---HHHhcCCCCCEEEEEeccCC
Confidence 357899999999632 223344444433 3 5889999986532222 22 2222 233 35789999964
No 430
>TIGR02475 CobW cobalamin biosynthesis protein CobW. A broader CobW family is delineated by two PFAM models which identify the N- and C-terminal domains (pfam02492 and pfam07683).
Probab=83.98 E-value=7.9 Score=31.94 Aligned_cols=37 Identities=27% Similarity=0.190 Sum_probs=25.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHHH----H---hcCEEEEEEeCCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAV----R---LCDGTIIVVDCVE 76 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l----~---~~d~~ilVvd~~~ 76 (161)
....++|-|.|..+....+.... . ..|+++.|+|+..
T Consensus 92 ~~d~IvIEtsG~a~P~~i~~~~~~~~l~~~~~l~~vvtvVDa~~ 135 (341)
T TIGR02475 92 RPDHILIETSGLALPKPLVQAFQWPEIRSRVTVDGVVTVVDGPA 135 (341)
T ss_pred CCCEEEEeCCCCCCHHHHHHHhcCccccceEEeeeEEEEEECch
Confidence 35678999999877555444321 1 3478999999974
No 431
>PRK13869 plasmid-partitioning protein RepA; Provisional
Probab=83.90 E-value=3.4 Score=34.90 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++|||||+.. ...+..++..||.+|+.+.+.
T Consensus 251 ~yD~IiIDtpP~l--~~~t~~al~aAd~viiPv~p~ 284 (405)
T PRK13869 251 DYDVVVIDCPPQL--GFLTLSGLCAATSMVITVHPQ 284 (405)
T ss_pred cCCEEEEECCCch--hHHHHHHHHHcCEEEEecCCc
Confidence 5789999999975 446888999999999998765
No 432
>COG0523 Putative GTPases (G3E family) [General function prediction only]
Probab=83.86 E-value=5.4 Score=32.79 Aligned_cols=66 Identities=26% Similarity=0.246 Sum_probs=41.3
Q ss_pred eeEEEEeCCCchhhHHHHHHHHH--------hcCEEEEEEeCCCCCChhH---HHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVR--------LCDGTIIVVDCVEGICAQT---QVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~--------~~d~~ilVvd~~~~~~~~~---~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
.-..+|-|-|...-.+.+..... ..|+++-|+|+........ .....++. .-=++++||+|+....
T Consensus 85 ~D~ivIEtTGlA~P~pv~~t~~~~~~l~~~~~ld~vvtvVDa~~~~~~~~~~~~~~~~Qia---~AD~ivlNK~Dlv~~~ 161 (323)
T COG0523 85 PDRLVIETTGLADPAPVIQTFLTDPELADGVRLDGVVTVVDAAHFLEGLDAIAELAEDQLA---FADVIVLNKTDLVDAE 161 (323)
T ss_pred CCEEEEeCCCCCCCHHHHHHhccccccccceeeceEEEEEeHHHhhhhHHHHHHHHHHHHH---hCcEEEEecccCCCHH
Confidence 56788899997665444333333 2478999999986544332 12222222 2238999999998765
No 433
>COG0489 Mrp ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=83.66 E-value=6 Score=31.42 Aligned_cols=67 Identities=21% Similarity=0.192 Sum_probs=45.8
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcchh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~~ 107 (161)
.+-+.+||||-.---. .....-...|++|+|....+............+.+.+.|++ ++.|+.+...
T Consensus 166 ~~D~vIID~PP~~g~~-d~~i~~~~~~g~viVt~p~~~~~~~v~ka~~~~~~~~~~vlGvv~Nm~~~~~ 233 (265)
T COG0489 166 EYDYVIIDTPPGTGDA-DATVLQRIPDGVVIVTTPGKTALEDVKKAIDMLEKAGIPVLGVVENMSYFIC 233 (265)
T ss_pred CCCEEEEeCCCCchHH-HHHHHhccCCeEEEEeCCccchHHHHHHHHHHHHhcCCceEEEEecCccCcc
Confidence 4789999999863211 12222334568888887665555555667788888899998 7899877653
No 434
>KOG1533|consensus
Probab=83.60 E-value=7.3 Score=31.01 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=41.3
Q ss_pred ceeEEEEeCCCchh------hHHHHHHHHHhcCEEEEEEeCCCCC------ChhHH--HHHHHHHHcCCCcEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVD------FSSEVSTAVRLCDGTIIVVDCVEGI------CAQTQ--VALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~------~~~~~~~~l~~~d~~ilVvd~~~~~------~~~~~--~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
...+.++|+|||-+ -...+...++.-+.-++++...+.. ..... ..+.-+.....|.|=|+.|+|+
T Consensus 96 ~~~Y~lFDcPGQVELft~h~~l~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~tMl~melphVNvlSK~Dl 175 (290)
T KOG1533|consen 96 TDHYVLFDCPGQVELFTHHDSLNKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLATMLHMELPHVNVLSKADL 175 (290)
T ss_pred cCcEEEEeCCCcEEEEeccchHHHHHHHHHHcCceEEEEEeeeceeeCChHHHHHHHHHHHHHHHhhcccchhhhhHhHH
Confidence 45789999999754 3445666666667555544433221 11111 1122233457899999999999
Q ss_pred hhh
Q psy2609 106 LIL 108 (161)
Q Consensus 106 ~~~ 108 (161)
.+.
T Consensus 176 ~~~ 178 (290)
T KOG1533|consen 176 LKK 178 (290)
T ss_pred HHh
Confidence 754
No 435
>PF09140 MipZ: ATPase MipZ; InterPro: IPR015223 Cell division in bacteria is facilitated by a polymeric ring structure, the Z ring, composed of tubulin-like FtsZ protofilaments. Correct positioning of the division plane is a prerequisite for the generation of daughter cells with a normal chromosome complement. In Caulobacter crescentus MipZ, an essential protein, coordinates and regulates the assembly of the FtsZ cytokinetic ring during cell division. MipZ, forms a complex with the partitioning protein ParB near the origin of replication and localizes with the duplicated origin regions to the cell poles. MipZ also directly interferes with FtsZ polymerisation, thereby restricting FtsZ ring formation to mid-cell, the region of lowest MipZ concentration. In eukaryotes members of this entry belong to the Mrp/NBP35 ATP-binding protein family, and specifically the NUBP2/CFD1 subfamily. This includes the cytosolic Fe-S cluster assembly factor Cfd1, which is a component of the cytosolic iron-sulphur (Fe/S) protein assembly machinery. This protein is required for maturation of extra-mitochondrial Fe/S proteins. It may bind and transfer a labile 4Fe-4S cluster to target apoproteins. Cfd1 is also required for biogenesis and export of both ribosomal subunits, suggesting a role in assembly of the Fe/S clusters in RLI1, a protein which performs rRNA processing and ribosome export. ; PDB: 2XIT_B 2XJ4_A 2XJ9_A.
Probab=82.82 E-value=8.7 Score=30.62 Aligned_cols=93 Identities=16% Similarity=0.196 Sum_probs=45.3
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC-------------C----CCChhHHHHHHHHHH----cCCCc--
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV-------------E----GICAQTQVALKQAWL----EKIQP-- 96 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~-------------~----~~~~~~~~~~~~~~~----~~~p~-- 96 (161)
..-+.+|||||-.... +..+...||.++--+.-+ . +++...+.+|+.-+. .+.|+
T Consensus 98 ~~DfLVID~PGtd~~l--sr~Ahs~ADtLiTPlNdSfvDfDllg~vD~~~~~v~~ps~Yse~vw~~r~~ra~~~~~~idW 175 (261)
T PF09140_consen 98 DLDFLVIDTPGTDDRL--SRVAHSMADTLITPLNDSFVDFDLLGQVDPETFKVIGPSVYSEMVWEARKLRAQADGKPIDW 175 (261)
T ss_dssp H-SEEEEEE-SSS-HH--HHHHHHT-SEEEEEEESSHHHHCCCEEE-TTTS-EEEE-HHHHHHHHHHHCCCCTSSS--EE
T ss_pred CCCEEEEeCCCCCcHH--HHHHHHhCCEEEccCchhHHhHHHHhccCcccceecCccHHHHHHHHHHHHHHHcCCCCccE
Confidence 4579999999976543 456777888777544322 1 234555666654332 23444
Q ss_pred EEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhhhhhch
Q psy2609 97 ILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFA 137 (161)
Q Consensus 97 ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 137 (161)
|++-|..-..... +....-..+..+.+.+......+|+
T Consensus 176 vv~rnRl~~~~a~---Nk~~~~~~l~~ls~rigfr~~~G~~ 213 (261)
T PF09140_consen 176 VVLRNRLSHLDAR---NKRRVEEALEELSKRIGFRVAPGFS 213 (261)
T ss_dssp EEEEESBTT--HH---HHHHHHHHHHHHHHHHT-EEEE--B
T ss_pred EEEecCccHHHhH---HHHHHHHHHHHHHHhhCceeCCCcc
Confidence 7889987654332 1122222344455555555555555
No 436
>PRK13705 plasmid-partitioning protein SopA; Provisional
Probab=82.72 E-value=4.7 Score=33.86 Aligned_cols=34 Identities=21% Similarity=0.214 Sum_probs=28.1
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++|||||+.- ...+..++..||.+|+.+.+.
T Consensus 234 ~YD~IiIDtpP~l--~~~t~nal~AaD~viiP~~~~ 267 (388)
T PRK13705 234 DYDVIVIDSAPNL--GIGTINVVCAADVLIVPTPAE 267 (388)
T ss_pred cCCEEEEECCCch--hHHHHHHHHHcCEEEEecCCc
Confidence 5789999999963 456788899999999988764
No 437
>KOG3022|consensus
Probab=82.62 E-value=1.6 Score=35.28 Aligned_cols=63 Identities=22% Similarity=0.182 Sum_probs=39.0
Q ss_pred ceeEEEEeCCCc-hhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEEC
Q psy2609 40 EYLINLIDSPGH-VDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNK 102 (161)
Q Consensus 40 ~~~i~iiDTpG~-~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK 102 (161)
+.-+.++|||-- -+-.-.+..+++.++++|+|-=..+-.-....+-..++++.++|++ +|-|-
T Consensus 156 ~lDyLviDtPPGtsDehls~~~~~~~~~gAviVTTPQ~vAl~Dv~K~i~fc~K~~I~ilGvVENM 220 (300)
T KOG3022|consen 156 ELDYLVIDTPPGTSDEHLSLVQFLRESDGAVIVTTPQEVALQDVRKEIDFCRKAGIPILGVVENM 220 (300)
T ss_pred CcCEEEEeCCCCCChhhhheeecccccCceEEEeCchhhhhHHHHhhhhhhhhcCCceEEEEecc
Confidence 567899999864 2222234455566689888874332212333455677888999998 45554
No 438
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=82.31 E-value=0.27 Score=39.76 Aligned_cols=51 Identities=12% Similarity=0.005 Sum_probs=25.6
Q ss_pred CCCcEEEEECCcchhhh-h-cCChHHHHHhHHHHHHHHHhhhhhhchhhhhhh
Q psy2609 93 KIQPILVLNKIDRLILE-M-KLSPLDIYVHLSQLLEQVNAVMGELFASQVMDE 143 (161)
Q Consensus 93 ~~p~ilv~NK~Dl~~~~-~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (161)
..+-++++||+|+.... . .....+.+.++....+.++++.....+.+.+.+
T Consensus 230 ~~ADIVVLNKiDLl~~~~~dle~~~~~lr~lnp~a~I~~vSA~tGeGld~L~~ 282 (290)
T PRK10463 230 AAASLMLLNKVDLLPYLNFDVEKCIACAREVNPEIEIILISATSGEGMDQWLN 282 (290)
T ss_pred hcCcEEEEEhHHcCcccHHHHHHHHHHHHhhCCCCcEEEEECCCCCCHHHHHH
Confidence 45669999999997421 1 001122222222334445555555555555543
No 439
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=82.13 E-value=0.17 Score=37.39 Aligned_cols=14 Identities=36% Similarity=0.541 Sum_probs=9.8
Q ss_pred eEEEEeCCCchhhH
Q psy2609 42 LINLIDSPGHVDFS 55 (161)
Q Consensus 42 ~i~iiDTpG~~~~~ 55 (161)
...+|||||+..|.
T Consensus 88 g~~iIDTPGf~~~~ 101 (161)
T PF03193_consen 88 GGYIIDTPGFRSFG 101 (161)
T ss_dssp SEEEECSHHHHT--
T ss_pred CcEEEECCCCCccc
Confidence 45799999987653
No 440
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=82.04 E-value=7.7 Score=33.02 Aligned_cols=64 Identities=16% Similarity=0.207 Sum_probs=36.9
Q ss_pred ceeEEEEeCCCchhh----HHHHHHHHHh---cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDF----SSEVSTAVRL---CDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~----~~~~~~~l~~---~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.+.++||||||.... .......+.. -.-+.+|++++.+. .....++.... .+++ =++++|+|-.
T Consensus 299 ~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~-~~l~~~~~~f~--~~~~~~vI~TKlDet 370 (424)
T PRK05703 299 DCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKY-EDLKDIYKHFS--RLPLDGLIFTKLDET 370 (424)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCH-HHHHHHHHHhC--CCCCCEEEEeccccc
Confidence 468999999997432 2233334442 23668889887432 12223333322 3343 5889999974
No 441
>cd02040 NifH NifH gene encodes component II (iron protein) of nitrogenase. Nitrogenase is responsible for the biological nitrogen fixation, i.e. reduction of molecular nitrogen to ammonia. NifH consists of two oxygen-sensitive metallosulfur proteins: the mollybdenum-iron (alternatively, vanadium-iron or iron-iron) protein (commonly referred to as component 1), and the iron protein (commonly referred to as component 2). The iron protein is a homodimer, with an Fe4S4 cluster bound between the subunits and two ATP-binding domains. It supplies energy by ATP hydrolysis, and transfers electrons from reduced ferredoxin or flavodoxin to component 1 for the reduction of molecular nitrogen to ammonia.
Probab=80.86 E-value=2.2 Score=33.25 Aligned_cols=36 Identities=14% Similarity=0.037 Sum_probs=24.1
Q ss_pred ceeEEEEeCCCchhhHHH-HHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSE-VSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~-~~~~l~~~d~~ilVvd~~ 75 (161)
.+.++|+||||....... ...++..+|.+++++.++
T Consensus 116 ~yD~viID~~g~~~~~~~~~~~~~~aaD~vlip~~p~ 152 (270)
T cd02040 116 DLDFVIYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE 152 (270)
T ss_pred CCCEEEEecccCcccCCcccccccccccEEEEEecCc
Confidence 578999999986422111 122233699999999876
No 442
>TIGR03453 partition_RepA plasmid partitioning protein RepA. Members of this family are the RepA (or ParA) protein involved in replicon partitioning. All known examples occur in bacterial species with two or more replicons, on a plasmid or the smaller chromosome. Note that an apparent exception may be seen as a pseudomolecule from assembly of an incompletely sequenced genome. Members of this family belong to a larger family that also includes the enzyme cobyrinic acid a,c-diamide synthase, but assignment of that name to members of this family would be in error.
Probab=80.52 E-value=5.4 Score=33.27 Aligned_cols=34 Identities=24% Similarity=0.345 Sum_probs=28.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++|+|||+.. ...+..++..||.+|+++.+.
T Consensus 234 ~yD~IiiD~pp~~--~~~~~~al~aad~viipv~p~ 267 (387)
T TIGR03453 234 DYDVVVIDCPPQL--GFLTLSALCAATGVLITVHPQ 267 (387)
T ss_pred cCCEEEEeCCccH--hHHHHHHHHHcCeeEEcCCCc
Confidence 5789999999974 446788999999999998764
No 443
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=80.36 E-value=8 Score=32.02 Aligned_cols=64 Identities=23% Similarity=0.320 Sum_probs=34.5
Q ss_pred CceeEEEEeCCCchh----hHHH---HHHHHHhcCE-----EEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcc
Q psy2609 39 EEYLINLIDSPGHVD----FSSE---VSTAVRLCDG-----TIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDR 105 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~----~~~~---~~~~l~~~d~-----~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 105 (161)
.++-+.|+||+|--. .+.+ ....+...+. +++|+|++.|-.. ....+.. ..-+++ =++++|+|-
T Consensus 220 r~~DvvliDTAGRLhnk~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttGqna--l~QAk~F-~eav~l~GiIlTKlDg 296 (340)
T COG0552 220 RGIDVVLIDTAGRLHNKKNLMDELKKIVRVIKKDDPDAPHEILLVLDATTGQNA--LSQAKIF-NEAVGLDGIILTKLDG 296 (340)
T ss_pred cCCCEEEEeCcccccCchhHHHHHHHHHHHhccccCCCCceEEEEEEcccChhH--HHHHHHH-HHhcCCceEEEEeccc
Confidence 457899999999421 2222 2222222233 7788899854321 1112211 223454 378999994
No 444
>PRK12289 GTPase RsgA; Reviewed
Probab=80.32 E-value=0.6 Score=38.77 Aligned_cols=14 Identities=14% Similarity=-0.069 Sum_probs=11.0
Q ss_pred ccccccccCCchhH
Q psy2609 2 LCMVSSYMDSRKDE 15 (161)
Q Consensus 2 ~~g~~~~~D~~~~E 15 (161)
++||+++++.+..+
T Consensus 182 gVGKSSLIN~L~~~ 195 (352)
T PRK12289 182 GVGKSSLINRLIPD 195 (352)
T ss_pred CCCHHHHHHHHcCc
Confidence 68999999887543
No 445
>PF14331 ImcF-related_N: ImcF-related N-terminal domain
Probab=79.84 E-value=2 Score=34.13 Aligned_cols=43 Identities=19% Similarity=0.193 Sum_probs=26.6
Q ss_pred cCEEEEEEeCCCCCChh-----HHHHH--------HHH--HHcCCCcEEEEECCcchh
Q psy2609 65 CDGTIIVVDCVEGICAQ-----TQVAL--------KQA--WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~-----~~~~~--------~~~--~~~~~p~ilv~NK~Dl~~ 107 (161)
.+|+|+++|+.+-.... ...+. +.. ....+|+-++++|||+..
T Consensus 26 lnGvil~vs~~~Ll~~~~~~r~l~~~a~~lR~rL~el~~~lg~~~PVYvv~Tk~D~l~ 83 (266)
T PF14331_consen 26 LNGVILTVSVDDLLNADEAERELEALARALRQRLEELQRTLGVRLPVYVVFTKCDLLP 83 (266)
T ss_pred CCEEEEEEEHHHHhcCChhhhHHHHHHHHHHHHHHHHHHHhCCCCCeEeeeECCCccc
Confidence 58999999986322111 11111 111 124799999999999863
No 446
>smart00010 small_GTPase Small GTPase of the Ras superfamily; ill-defined subfamily. SMART predicts Ras-like small GTPases of the ARF, RAB, RAN, RAS, and SAR subfamilies. Others that could not be classified in this way are predicted to be members of the small GTPase superfamily without predictions of the subfamily.
Probab=79.64 E-value=3.3 Score=27.68 Aligned_cols=52 Identities=8% Similarity=-0.178 Sum_probs=30.6
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH--HHcCCCcEEEEECCcchh
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQA--WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~--~~~~~p~ilv~NK~Dl~~ 107 (161)
.....+.+.++.+++|++.+..-+.......... .+..+|.++++||.|+..
T Consensus 38 ~~~~~~~~s~~~~~~v~~~~~~~s~~~~~~~~i~~~~k~dl~~~~~~nk~dl~~ 91 (124)
T smart00010 38 VYDPTSYESFDVVLQCWRVDDRDSADNKNVPEVLVGNKSDLPILVGGNRDVLEE 91 (124)
T ss_pred hccccccCCCCEEEEEEEccCHHHHHHHhHHHHHhcCCCCCcEEEEeechhhHh
Confidence 3345567778999998987743222111111111 123567789999999843
No 447
>COG1162 Predicted GTPases [General function prediction only]
Probab=79.47 E-value=0.59 Score=37.99 Aligned_cols=14 Identities=14% Similarity=0.033 Sum_probs=11.0
Q ss_pred cccccccCCchhHH
Q psy2609 3 CMVSSYMDSRKDEQ 16 (161)
Q Consensus 3 ~g~~~~~D~~~~E~ 16 (161)
+||+++++.+..|.
T Consensus 175 VGKSSLiN~L~p~~ 188 (301)
T COG1162 175 VGKSTLINALLPEL 188 (301)
T ss_pred CcHHHHHHhhCchh
Confidence 57999999887644
No 448
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.34 E-value=5 Score=38.51 Aligned_cols=66 Identities=21% Similarity=0.230 Sum_probs=38.6
Q ss_pred eEEEEeCCCch--------hhHHHHH-------H--HHHhcCEEEEEEeCCCCCC--hhHH-HHHH----------HHHH
Q psy2609 42 LINLIDSPGHV--------DFSSEVS-------T--AVRLCDGTIIVVDCVEGIC--AQTQ-VALK----------QAWL 91 (161)
Q Consensus 42 ~i~iiDTpG~~--------~~~~~~~-------~--~l~~~d~~ilVvd~~~~~~--~~~~-~~~~----------~~~~ 91 (161)
.-++|||+|-. .-...+. . ..+..+|+|+.+|+.+-.+ .... .+.. ....
T Consensus 175 eaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~tL~ 254 (1188)
T COG3523 175 EAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRETLH 254 (1188)
T ss_pred ceEEEcCCcceecccCcchhhHHHHHHHHHHHHHhccCCCCceEEEEEEHHHHcCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 67899999931 1111222 1 1233689999999864332 2221 1111 1122
Q ss_pred cCCCcEEEEECCcchh
Q psy2609 92 EKIQPILVLNKIDRLI 107 (161)
Q Consensus 92 ~~~p~ilv~NK~Dl~~ 107 (161)
...|+.+++||+|+..
T Consensus 255 ~~~PVYl~lTk~Dll~ 270 (1188)
T COG3523 255 ARLPVYLVLTKADLLP 270 (1188)
T ss_pred cCCceEEEEecccccc
Confidence 4799999999999964
No 449
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=79.34 E-value=13 Score=25.23 Aligned_cols=51 Identities=20% Similarity=0.113 Sum_probs=36.7
Q ss_pred hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcc
Q psy2609 54 FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 54 ~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
....-...++.||++|..++... +...+..-+.+....++|++++.+....
T Consensus 51 i~~~d~~~i~~~D~via~l~~~~-~d~Gt~~ElG~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 51 IFERDLEGIRECDIVIANLDGFR-PDSGTAFELGYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HHHHHHHHHHHSSEEEEEECSSS---HHHHHHHHHHHHTTSEEEEEECCCCT
T ss_pred HHHHHHHHHHHCCEEEEECCCCC-CCCcHHHHHHHHHHCCCEEEEEEcCCcc
Confidence 34456688999999999999753 3444544456677789999999887764
No 450
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=79.29 E-value=6.5 Score=26.06 Aligned_cols=46 Identities=20% Similarity=0.098 Sum_probs=32.5
Q ss_pred hhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE
Q psy2609 52 VDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV 99 (161)
Q Consensus 52 ~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv 99 (161)
..........+..+|++|++.|... ........+.+++.++|++.+
T Consensus 36 ~~~~~~l~~~i~~aD~VIv~t~~vs--H~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 36 EKKASRLPSKIKKADLVIVFTDYVS--HNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred ccchhHHHHhcCCCCEEEEEeCCcC--hHHHHHHHHHHHHcCCcEEEE
Confidence 3344457888999999999999862 223344456667789998876
No 451
>PRK00090 bioD dithiobiotin synthetase; Reviewed
Probab=78.52 E-value=1.6 Score=33.21 Aligned_cols=67 Identities=21% Similarity=0.223 Sum_probs=35.5
Q ss_pred ceeEEEEeCCCch--hhH---HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHV--DFS---SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~--~~~---~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-+.++|+||.- .+. .....+.....-+++|.+...+.-......++.+...++++. +++|+++-.
T Consensus 103 ~~D~viIEg~gg~~~~~~~~~~~adl~~~l~~pvilV~~~~~~~i~~~~~~i~~l~~~~~~i~gvIlN~~~~~ 175 (222)
T PRK00090 103 QYDLVLVEGAGGLLVPLTEDLTLADLAKQLQLPVILVVGVKLGCINHTLLTLEAIRARGLPLAGWVANGIPPE 175 (222)
T ss_pred hCCEEEEECCCceeccCCCCCcHHHHHHHhCCCEEEEECCCCcHHHHHHHHHHHHHHCCCCeEEEEEccCCCc
Confidence 5678999999842 111 011111111234667776654322223334444555677764 788998753
No 452
>PHA02519 plasmid partition protein SopA; Reviewed
Probab=78.25 E-value=6.1 Score=33.21 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=28.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.|-++|||||+.-. ..+..++..||.+|+.+.+.
T Consensus 234 ~YD~IlID~pPslg--~lt~nAL~AAd~vliPv~~~ 267 (387)
T PHA02519 234 NYDIIVIDSAPNLG--TGTINVVCAADVIVVATPAE 267 (387)
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHhCEEEEecCCc
Confidence 57899999999764 46788999999999988664
No 453
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=76.87 E-value=2.6 Score=32.29 Aligned_cols=32 Identities=28% Similarity=0.291 Sum_probs=21.0
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCc-----EEEEECCcchh
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQP-----ILVLNKIDRLI 107 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-----ilv~NK~Dl~~ 107 (161)
..|+|+|.++|...-. .+=|. ++|+||.|++.
T Consensus 120 ~~v~VidvteGe~~P~---------K~gP~i~~aDllVInK~DLa~ 156 (202)
T COG0378 120 LRVVVIDVTEGEDIPR---------KGGPGIFKADLLVINKTDLAP 156 (202)
T ss_pred eEEEEEECCCCCCCcc---------cCCCceeEeeEEEEehHHhHH
Confidence 7888899887652100 11232 78999999975
No 454
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=76.13 E-value=1.1 Score=36.04 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=11.3
Q ss_pred ccccccccCCchhHH
Q psy2609 2 LCMVSSYMDSRKDEQ 16 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~ 16 (161)
+||||++++.+..+.
T Consensus 171 g~GKSTlin~l~~~~ 185 (287)
T cd01854 171 GVGKSTLINALLPDL 185 (287)
T ss_pred CCCHHHHHHHHhchh
Confidence 689999988765544
No 455
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=75.81 E-value=1.7 Score=34.71 Aligned_cols=60 Identities=22% Similarity=0.243 Sum_probs=32.5
Q ss_pred ceeEEEEeCCCchhhHHHHH-HHHHhcCEEEEEEeCCCCCChhHHH--HHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 40 EYLINLIDSPGHVDFSSEVS-TAVRLCDGTIIVVDCVEGICAQTQV--ALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~-~~l~~~d~~ilVvd~~~~~~~~~~~--~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
.+-++|+-|-|-- +.. .....+|.+++|+-...|-.-|..+ +++ +.=|+|+||.|+...+
T Consensus 121 G~D~IiiETVGvG----QsE~~I~~~aD~~v~v~~Pg~GD~iQ~~KaGimE------iaDi~vVNKaD~~gA~ 183 (266)
T PF03308_consen 121 GFDVIIIETVGVG----QSEVDIADMADTVVLVLVPGLGDEIQAIKAGIME------IADIFVVNKADRPGAD 183 (266)
T ss_dssp T-SEEEEEEESSS----THHHHHHTTSSEEEEEEESSTCCCCCTB-TTHHH------H-SEEEEE--SHHHHH
T ss_pred CCCEEEEeCCCCC----ccHHHHHHhcCeEEEEecCCCccHHHHHhhhhhh------hccEEEEeCCChHHHH
Confidence 3566677776631 122 2245589888888776444333221 222 3459999999987654
No 456
>KOG3125|consensus
Probab=75.34 E-value=3.8 Score=31.51 Aligned_cols=100 Identities=14% Similarity=0.013 Sum_probs=54.1
Q ss_pred Ccccccccc-CCchhHHHcCCccccceEEEEeecCCC-------CCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEE
Q psy2609 1 MLCMVSSYM-DSRKDEQERGITMKSSSISLYYKDNKD-------TPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVV 72 (161)
Q Consensus 1 ~~~g~~~~~-D~~~~E~~~giti~~~~~~~~~~~~~~-------~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVv 72 (161)
|++||++-+ -+...|..-|.++- -+.+..++- +-.+..+.-|=.||...+..-....|. -++-|+-+
T Consensus 36 MfSGKTt~LLrr~r~~~~~grrv~----liK~~kDTRy~~~si~Thdg~~~~c~~lp~a~~~s~f~~d~~~-~~vdVigI 110 (234)
T KOG3125|consen 36 MFSGKTTELLRRIRREIIAGRRVL----LIKYAKDTRYESSSIVTHDGIEMPCWALPDASFLSEFGKDALN-GDVDVIGI 110 (234)
T ss_pred ccCcchHHHHHHHHHHHhcCceEE----EEEecCCcccchheeEeccCCcccccccCCchhHHHHHHHHhc-CcceEEEe
Confidence 899998755 44456666555542 222221110 111234566777874444434444443 36677777
Q ss_pred eCCCCCChhHHHHHHHHHHcCCCcEEEEECCcc
Q psy2609 73 DCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 73 d~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
|-.+-...+.+..-+.+...++++++++=--|-
T Consensus 111 DEaQFf~dl~efc~evAd~~Gk~VivagLdgdF 143 (234)
T KOG3125|consen 111 DEAQFFGDLYEFCREVADVHGKTVIVAGLDGDF 143 (234)
T ss_pred cHHHHhHHHHHHHHHHHhccCCEEEEEecCCch
Confidence 755444444444444444578999888755453
No 457
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=75.14 E-value=15 Score=31.35 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=34.7
Q ss_pred ceeEEEEeCCCchhhH----HHHHHHHHh---cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFS----SEVSTAVRL---CDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~----~~~~~~l~~---~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
++.+.+|||+|..... .+... +.. ..-.++|+|++.+.... ..+.... ..+++ =++++|.|-.
T Consensus 269 ~~d~VLIDTaGrsqrd~~~~~~l~~-l~~~~~~~~~~LVl~at~~~~~~-~~~~~~f--~~~~~~~~I~TKlDEt 339 (420)
T PRK14721 269 GKHMVLIDTVGMSQRDQMLAEQIAM-LSQCGTQVKHLLLLNATSSGDTL-DEVISAY--QGHGIHGCIITKVDEA 339 (420)
T ss_pred CCCEEEecCCCCCcchHHHHHHHHH-HhccCCCceEEEEEcCCCCHHHH-HHHHHHh--cCCCCCEEEEEeeeCC
Confidence 4678999999975422 22222 222 23578999998432221 2222211 13444 4788999964
No 458
>PRK13231 nitrogenase reductase-like protein; Reviewed
Probab=74.12 E-value=4.9 Score=31.39 Aligned_cols=65 Identities=14% Similarity=-0.061 Sum_probs=34.0
Q ss_pred ceeEEEEeCCCchhhHHH-HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSE-VSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~-~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~D 104 (161)
++-++||||||..-.... .......+|.+|+++.+..-.-.......+.+...+.+.. ++.|..+
T Consensus 113 ~yD~ViIDt~~~~~~~~~~~~~~~~aaD~vlip~~p~~~si~~~~~~~~~i~~~~~~~~~vv~~~~~ 179 (264)
T PRK13231 113 DIDVVIYDVLGDVVCGGFSVPLREDYADEVYIVTSGEYMSLYAANNIARGIKKLKGKLGGIICNCRG 179 (264)
T ss_pred CCCEEEEecCCCceEccccccccccccceeEEEecCchhHHHHHHHHHHHHHHcCCcceEEEEcCCC
Confidence 578999999985421111 0111257899999987652211222233333443344443 4555544
No 459
>TIGR03677 rpl7ae 50S ribosomal protein L7Ae. Multifunctional RNA-binding protein that recognizes the K-turn motif in ribosomal RNA, box H/ACA, box C/D and box C'/D' sRNAs. Interacts with protein L15e.
Probab=72.22 E-value=8.6 Score=26.72 Aligned_cols=51 Identities=18% Similarity=-0.033 Sum_probs=36.0
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+..+++...+-++++..+-.+......+..++...++|.+.+.+|.+|-
T Consensus 32 ~~v~kaikkgka~LVilA~D~s~~~~~~~i~~lc~~~~Ip~~~~~sk~eLG 82 (117)
T TIGR03677 32 NEVTKAVERGIAKLVVIAEDVEPPEIVAHLPALCEEKGIPYVYVKKKEDLG 82 (117)
T ss_pred HHHHHHHHcCCccEEEEeCCCCcHHHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 457778887777777776653322223556667778899999999998874
No 460
>PRK13233 nifH nitrogenase reductase; Reviewed
Probab=71.82 E-value=3.8 Score=32.25 Aligned_cols=59 Identities=15% Similarity=0.027 Sum_probs=33.4
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHH------hcCEEEEEEeCCCCCChhHHHHH----HHHHHcCCCcE-EEEECC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVR------LCDGTIIVVDCVEGICAQTQVAL----KQAWLEKIQPI-LVLNKI 103 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~------~~d~~ilVvd~~~~~~~~~~~~~----~~~~~~~~p~i-lv~NK~ 103 (161)
.+-+++|||+|.- +..++. .||.+|+++.+....-.....++ +.....+++++ ++.|+.
T Consensus 118 ~yD~iliD~~~~~-----~~~al~~~~~~~aad~viIp~~p~~~sl~g~~~l~~~i~~~~~~~~l~~~Giv~n~~ 187 (275)
T PRK13233 118 DLDFVFFDVLGDV-----VCGGFAMPIRDGKAQEVYIVASGEMMAIYAANNICKGLVKYAEQSGVRLGGIICNSR 187 (275)
T ss_pred CCCEEEEecCCce-----eeccccccchhccCceEEEeccccHHHHHHHHHHHHHHHHHHhcCCCceeEEEeeCC
Confidence 5778999998842 222333 68999999877521111111221 22223456655 788974
No 461
>PRK13232 nifH nitrogenase reductase; Reviewed
Probab=71.67 E-value=6.4 Score=30.97 Aligned_cols=65 Identities=11% Similarity=-0.083 Sum_probs=35.5
Q ss_pred ceeEEEEeCCCchhhH-HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHH---HcCCCcE-EEEECCc
Q psy2609 40 EYLINLIDSPGHVDFS-SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAW---LEKIQPI-LVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~-~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~---~~~~p~i-lv~NK~D 104 (161)
.+-+.+|||||..-.. -....++..||.+++++......-.......+.+. ..+.++. ++.|+.+
T Consensus 116 ~yD~vlID~~~~~~~~~~~~~~al~aad~vlip~~p~~~sl~~~~~~~k~l~~~~~~~l~~~GiV~n~~~ 185 (273)
T PRK13232 116 DLDYVFYDVLGDVVCGGFAMPIREGKAKEIYIVASGELMAIYAANNICKGLAKFAKGGARLGGIICNSRN 185 (273)
T ss_pred cCCEEEEecCCCeeECCEeccccccccceEEEecCchHHHHHHHHHHHHHHHHHhCCCCceeEEEEeCCC
Confidence 5789999999863211 11222345789999999764211111112223332 2345554 7788764
No 462
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=71.38 E-value=22 Score=30.92 Aligned_cols=65 Identities=14% Similarity=0.045 Sum_probs=32.9
Q ss_pred ceeEEEEeCCCchhhHH---HHHHHHHhc---CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSS---EVSTAVRLC---DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~---~~~~~l~~~---d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
++.+.+|||+|...... .....+... .-.++|+|++.+... ..+....... ...--+++||+|-.
T Consensus 334 d~d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt~~~~~-l~~i~~~f~~-~~~~g~IlTKlDet 404 (484)
T PRK06995 334 NKHIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNATSHGDT-LNEVVQAYRG-PGLAGCILTKLDEA 404 (484)
T ss_pred CCCeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCCCcHHH-HHHHHHHhcc-CCCCEEEEeCCCCc
Confidence 45789999999533221 112222221 226889998743311 1222222211 12234778999964
No 463
>PF02492 cobW: CobW/HypB/UreG, nucleotide-binding domain; InterPro: IPR003495 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. CobW proteins are generally found proximal to the trimeric cobaltochelatase subunit CobN, which is essential for vitamin B12 (cobalamin) biosynthesis []. They contain a P-loop nucleotide-binding loop in the N-terminal domain and a histidine-rich region in the C-terminal portion suggesting a role in metal binding, possibly as an intermediary between the cobalt transport and chelation systems. CobW might be involved in cobalt reduction leading to cobalt(I) corrinoids. This entry represents CobW-like proteins, including P47K (P31521 from SWISSPROT), a Pseudomonas chlororaphis protein needed for nitrile hydratase expression [], and urease accessory protein UreG, which acts as a chaperone in the activation of urease upon insertion of nickel into the active site [].; PDB: 2WSM_B 1NIJ_A 2HF9_A 2HF8_B.
Probab=71.34 E-value=10 Score=27.90 Aligned_cols=67 Identities=24% Similarity=0.178 Sum_probs=36.4
Q ss_pred ceeEEEEeCCCchhhHHH--HHHHH---HhcCEEEEEEeCCCCCChhH--HHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 40 EYLINLIDSPGHVDFSSE--VSTAV---RLCDGTIIVVDCVEGICAQT--QVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~--~~~~l---~~~d~~ilVvd~~~~~~~~~--~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
.....|+-+.|..+.... ....+ -..+.++.|+|+........ ..+..+ ...--++++||+|+...+
T Consensus 84 ~~d~IiIE~sG~a~p~~l~~~~~~~~~~~~~~~iI~vVDa~~~~~~~~~~~~~~~Q---i~~ADvIvlnK~D~~~~~ 157 (178)
T PF02492_consen 84 RPDRIIIETSGLADPAPLILQDPPLKEDFRLDSIITVVDATNFDELENIPELLREQ---IAFADVIVLNKIDLVSDE 157 (178)
T ss_dssp C-SEEEEEEECSSGGGGHHHHSHHHHHHESESEEEEEEEGTTHGGHTTHCHHHHHH---HCT-SEEEEE-GGGHHHH
T ss_pred CcCEEEECCccccccchhhhccccccccccccceeEEeccccccccccchhhhhhc---chhcCEEEEeccccCChh
Confidence 356788999996543333 11111 22578999999964211111 111122 233458999999998755
No 464
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=70.54 E-value=18 Score=22.54 Aligned_cols=36 Identities=25% Similarity=0.096 Sum_probs=26.3
Q ss_pred eEEEEeCCCchhhHHH-HHHHHHhcCEEEEEEeCCCC
Q psy2609 42 LINLIDSPGHVDFSSE-VSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~-~~~~l~~~d~~ilVvd~~~~ 77 (161)
.+.++|+||....... .......+|.++++++....
T Consensus 35 d~iivD~~~~~~~~~~~~~~~~~~~~~vi~v~~~~~~ 71 (99)
T cd01983 35 DYVLIDTPPGLGLLVLLCLLALLAADLVIIVTTPEAL 71 (99)
T ss_pred CEEEEeCCCCccchhhhhhhhhhhCCEEEEecCCchh
Confidence 6889999997543321 25677788999999988743
No 465
>KOG1486|consensus
Probab=70.41 E-value=3.5 Score=33.15 Aligned_cols=38 Identities=26% Similarity=0.421 Sum_probs=30.0
Q ss_pred ceeEEEEeCCCchh-------hHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 40 EYLINLIDSPGHVD-------FSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
+..|+++|.||.-. -.+++.+..+.||.++.|+|++..
T Consensus 108 ga~IQllDLPGIieGAsqgkGRGRQviavArtaDlilMvLDatk~ 152 (364)
T KOG1486|consen 108 GANIQLLDLPGIIEGASQGKGRGRQVIAVARTADLILMVLDATKS 152 (364)
T ss_pred CceEEEecCcccccccccCCCCCceEEEEeecccEEEEEecCCcc
Confidence 66899999999643 234566777889999999999864
No 466
>PF06564 YhjQ: YhjQ protein; InterPro: IPR017746 The YhjQ protein is encoded immediately upstream of bacterial cellulose synthase (bcs) genes in a broad range of bacteria, including both copies of the bcs locus in Klebsiella pneumoniae, and in several species is clearly part of the bcs operon. It is identified as a probable component of the bacterial cellulose metabolic process not only by gene location, but also by partial phylogenetic profiling, or Haft-Selengut algorithm [], based on a bacterial cellulose biosynthesis genome property profile. Cellulose plays an important role in biofilm formation and structural integrity in some bacteria. Mutants in yhjQ in Escherichia coli, show altered morphology an growth, but the function of YhjQ has not yet been determined.
Probab=70.08 E-value=21 Score=28.15 Aligned_cols=61 Identities=20% Similarity=0.126 Sum_probs=40.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
.+.++++|||-.. ...+...+..+|.+++|+-+.-.. ...+-+ .......-+++|+.|-.+
T Consensus 117 ~~~~iliD~P~g~--~~~~~~al~~aD~vL~V~~~Da~s---~~~L~q--~~l~~~~~~liNq~~~~s 177 (243)
T PF06564_consen 117 PYDWILIDTPPGP--SPYTRQALAAADLVLVVVNPDAAS---HARLHQ--RALPAGHRFLINQYDPAS 177 (243)
T ss_pred CCCEEEEeCCCCC--cHHHHHHHHhCCeEEEEeCCCHHH---HHHHHH--hcccCCcEEEEeccCccc
Confidence 5789999999853 456778899999999999765211 111111 111223578999999654
No 467
>KOG0085|consensus
Probab=69.01 E-value=1.7 Score=34.45 Aligned_cols=70 Identities=17% Similarity=0.185 Sum_probs=40.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC---------CCC--hhHHHHHHHHHH----cCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE---------GIC--AQTQVALKQAWL----EKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~---------~~~--~~~~~~~~~~~~----~~~p~ilv~NK~D 104 (161)
+..+-++|..|+..-.+.+...+.++-.+++++..++ .-. .....+.+-+.. .+-++|+++||.|
T Consensus 198 ~iifrmvDvGGqrserrKWIHCFEnvtsi~fLvaLSEYDQvL~E~dnENRMeESkALFrTIi~yPWF~nssVIlFLNKkD 277 (359)
T KOG0085|consen 198 KIIFRMVDVGGQRSERRKWIHCFENVTSIIFLVALSEYDQVLVESDNENRMEESKALFRTIITYPWFQNSSVILFLNKKD 277 (359)
T ss_pred hheeeeeecCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHhccccccCCceEEEechhh
Confidence 5667899999997655555555555544444443321 001 111111222211 4678999999999
Q ss_pred chhhh
Q psy2609 105 RLILE 109 (161)
Q Consensus 105 l~~~~ 109 (161)
+....
T Consensus 278 lLEek 282 (359)
T KOG0085|consen 278 LLEEK 282 (359)
T ss_pred hhhhh
Confidence 97644
No 468
>COG1192 Soj ATPases involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=68.78 E-value=20 Score=27.78 Aligned_cols=34 Identities=24% Similarity=0.287 Sum_probs=26.9
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++++|||+.. ...+..++..+|.+++-+-+.
T Consensus 119 ~yD~iiID~pp~l--~~l~~nal~asd~vlIP~~~~ 152 (259)
T COG1192 119 DYDYIIIDTPPSL--GVLTLNALAAADHVLIPVQPE 152 (259)
T ss_pred CCCEEEECCCCch--hHHHHHHHHHcCeeEEecCch
Confidence 6789999999976 567888899999766666543
No 469
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=68.60 E-value=11 Score=30.75 Aligned_cols=65 Identities=25% Similarity=0.213 Sum_probs=38.9
Q ss_pred eeEEEEeCCCchhhHHHHHHHHH--------hcCEEEEEEeCCCCCChhH--HHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVR--------LCDGTIIVVDCVEGICAQT--QVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~--------~~d~~ilVvd~~~~~~~~~--~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
...++|-|.|..+-.......+. ..++++.|+|+........ .....++. .-=++++||+|+...
T Consensus 91 ~d~IvIEttG~a~p~~i~~~~~~~~~l~~~~~l~~vvtvvDa~~~~~~~~~~~~~~~Qi~---~AD~IvlnK~Dl~~~ 165 (318)
T PRK11537 91 FDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVG---YADRILLTKTDVAGE 165 (318)
T ss_pred CCEEEEECCCccCHHHHHHHHhcChhhcccEEeccEEEEEEhhhhhhhccccHHHHHHHH---hCCEEEEeccccCCH
Confidence 45788999998765544443322 1378999999975332111 11112222 234899999999753
No 470
>KOG2484|consensus
Probab=66.09 E-value=1.7 Score=36.81 Aligned_cols=40 Identities=33% Similarity=0.410 Sum_probs=29.3
Q ss_pred ccccccccCCchhHHH------cCCccccceEEEEeecCCCCCCceeEEEEeCCCc
Q psy2609 2 LCMVSSYMDSRKDEQE------RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH 51 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~------~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~ 51 (161)
|.||+.+++.++..+. +|+|.......+ ...|-|+|.||.
T Consensus 262 NVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L----------dk~i~llDsPgi 307 (435)
T KOG2484|consen 262 NVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL----------DKKIRLLDSPGI 307 (435)
T ss_pred CCChhHHHHHHHHhccccCCCCccchhhhhheec----------cCCceeccCCce
Confidence 7899999999988886 466654332221 558899999996
No 471
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=65.34 E-value=22 Score=29.22 Aligned_cols=61 Identities=25% Similarity=0.257 Sum_probs=31.1
Q ss_pred eeEEEEeCCCchhhHHHHHH-HHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 41 YLINLIDSPGHVDFSSEVST-AVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~-~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+-++|+-|-|-- +... -..-+|.+++|.=..-|-.-|..+. . -..+-=|+|+||.|+...+
T Consensus 144 ~DvIIVETVGvG----Qsev~I~~~aDt~~~v~~pg~GD~~Q~iK~-G---imEiaDi~vINKaD~~~A~ 205 (323)
T COG1703 144 YDVIIVETVGVG----QSEVDIANMADTFLVVMIPGAGDDLQGIKA-G---IMEIADIIVINKADRKGAE 205 (323)
T ss_pred CCEEEEEecCCC----cchhHHhhhcceEEEEecCCCCcHHHHHHh-h---hhhhhheeeEeccChhhHH
Confidence 456666666631 1112 2234677777665443332222211 0 1123348999999976543
No 472
>PRK13695 putative NTPase; Provisional
Probab=64.77 E-value=13 Score=27.09 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=28.5
Q ss_pred HHHHhcCEEEEEEe---CCCCCChhHHHHHHHHHHcCCCcEEEEECCc
Q psy2609 60 TAVRLCDGTIIVVD---CVEGICAQTQVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 60 ~~l~~~d~~ilVvd---~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 104 (161)
..+..++. +++| ..+.........+..+...+.|+++++||..
T Consensus 92 ~~l~~~~~--lllDE~~~~e~~~~~~~~~l~~~~~~~~~~i~v~h~~~ 137 (174)
T PRK13695 92 RALEEADV--IIIDEIGKMELKSPKFVKAVEEVLDSEKPVIATLHRRS 137 (174)
T ss_pred hccCCCCE--EEEECCCcchhhhHHHHHHHHHHHhCCCeEEEEECchh
Confidence 33444555 6888 4444455555666666677899999999954
No 473
>PRK04175 rpl7ae 50S ribosomal protein L7Ae; Validated
Probab=64.28 E-value=15 Score=25.72 Aligned_cols=51 Identities=18% Similarity=-0.029 Sum_probs=35.4
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..+++...+-++++..+-........+..++...++|.+.+.+|.+|-
T Consensus 36 ~~v~kaikkgkakLVilA~D~s~~~i~~~~~~lc~~~~Vp~~~~~tk~eLG 86 (122)
T PRK04175 36 NETTKAVERGIAKLVVIAEDVDPEEIVAHLPLLCEEKKIPYVYVPSKKDLG 86 (122)
T ss_pred HHHHHHHHcCCccEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 457777877777777776553222223456677778899999999998874
No 474
>TIGR02016 BchX chlorophyllide reductase iron protein subunit X. This model represents the X subunit of the three-subunit enzyme, (bacterio)chlorophyllide reductase. This enzyme is responsible for the reduction of the chlorin B-ring and is closely related to the protochlorophyllide reductase complex which reduces the D-ring. Both of these complexes in turn are homologous to nitrogenase. This subunit is homologous to the nitrogenase component II, or "iron" protein.
Probab=63.93 E-value=15 Score=29.52 Aligned_cols=66 Identities=18% Similarity=0.090 Sum_probs=36.7
Q ss_pred ceeEEEEeCCCchhh-HHHHHHHHHhcCEEEEEEeCCCCCC---hhHHHHHHHHHHcC--CCc-EEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDF-SSEVSTAVRLCDGTIIVVDCVEGIC---AQTQVALKQAWLEK--IQP-ILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~-~~~~~~~l~~~d~~ilVvd~~~~~~---~~~~~~~~~~~~~~--~p~-ilv~NK~Dl 105 (161)
.+-++++||+|..-- ......++..||.++++.......- ......++.....+ +++ -+|+|+.+.
T Consensus 122 ~yD~IliD~~~~~~~~g~~~~~a~~~Ad~viVvt~~e~~sl~~a~~l~k~v~~~~~~~~~v~i~GVV~N~~~~ 194 (296)
T TIGR02016 122 DFDFVLMDFLGDVVCGGFATPLARSLAEEVIVIGSNDRQSLYVANNICNAVEYFRKLGGRVGLLGLVVNRDDG 194 (296)
T ss_pred cCCEEEEecCCCccccccccchhhhhCCeEEEEecchHHHHHHHHHHHHHHHHHHHcCCCCcceEEEEeCCCC
Confidence 688999999874210 0012334457899998887642111 11222333333433 444 488999974
No 475
>TIGR01287 nifH nitrogenase iron protein. This model describes nitrogenase (EC 1.18.6.1) iron protein, also called nitrogenase reductase or nitrogenase component II. This model includes molybdenum-iron nitrogenase reductase (nifH), vanadium-iron nitrogenase reductase (vnfH), and iron-iron nitrogenase reductase (anfH). The model excludes the homologous protein from the light-independent protochlorophyllide reductase.
Probab=63.42 E-value=11 Score=29.57 Aligned_cols=36 Identities=14% Similarity=0.029 Sum_probs=23.8
Q ss_pred ceeEEEEeCCCchhhHHH-HHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSE-VSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~-~~~~l~~~d~~ilVvd~~ 75 (161)
.+-+.++||||..-.... ...++..||.+|+++.+.
T Consensus 115 ~yD~iiIDt~~~~~~~~~~~~~~~~aAD~viip~~p~ 151 (275)
T TIGR01287 115 DLDFVFYDVLGDVVCGGFAMPIREGKAQEIYIVTSGE 151 (275)
T ss_pred cCCEEEEeccCcceecceeeccccccccEEEEEecch
Confidence 578999999985321111 122344689999999776
No 476
>KOG1491|consensus
Probab=63.15 E-value=7.7 Score=32.37 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=47.0
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCC---------C-CCCceeEEEEeCCCchh-------hHHHHH
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNK---------D-TPEEYLINLIDSPGHVD-------FSSEVS 59 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~---------~-~~~~~~i~iiDTpG~~~-------~~~~~~ 59 (161)
|.||+|+++.+. .+.=|-.||+.....+..-..- + ..-...+++.|++|.-+ ....-.
T Consensus 30 NvGKST~fnalT~~~a~~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkGAs~G~GLGN~FL 109 (391)
T KOG1491|consen 30 NVGKSTFFNALTKSKAGAANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKGASAGEGLGNKFL 109 (391)
T ss_pred CCchHHHHHHHhcCCCCccCCCcceeccccceeecCchHHHHHHHhcCCcceeeeeEEEEeecccccCcccCcCchHHHH
Confidence 678988875442 3444455666555444321000 0 11235799999999643 455677
Q ss_pred HHHHhcCEEEEEEeCC
Q psy2609 60 TAVRLCDGTIIVVDCV 75 (161)
Q Consensus 60 ~~l~~~d~~ilVvd~~ 75 (161)
+.++.+|+++-|+++-
T Consensus 110 s~iR~vDaifhVVr~f 125 (391)
T KOG1491|consen 110 SHIRHVDAIFHVVRAF 125 (391)
T ss_pred HhhhhccceeEEEEec
Confidence 8899999999999874
No 477
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=62.14 E-value=22 Score=27.30 Aligned_cols=42 Identities=12% Similarity=-0.161 Sum_probs=27.3
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHH-cCCCcEEEEECCcchhh
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWL-EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~~~ 108 (161)
.-++.+|=.+-........+..+.. .++|+++.+=+.|-...
T Consensus 83 ~~~v~IDEaQF~~~~~v~~l~~lad~lgi~Vi~~GL~~DFrge 125 (201)
T COG1435 83 VDCVLIDEAQFFDEELVYVLNELADRLGIPVICYGLDTDFRGE 125 (201)
T ss_pred cCEEEEehhHhCCHHHHHHHHHHHhhcCCEEEEeccccccccC
Confidence 4567777665555444444444444 49999999999996543
No 478
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=62.01 E-value=37 Score=28.93 Aligned_cols=65 Identities=15% Similarity=0.209 Sum_probs=37.3
Q ss_pred ceeEEEEeCCCchh----hHHHHHHHHHhc--CEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVD----FSSEVSTAVRLC--DGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~~~l~~~--d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~ 107 (161)
.+.++|+||.|.-. ...++..++..+ .-.-||++++... ..-.++.... ..+|+ =++++|+|-..
T Consensus 281 ~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~-~dlkei~~~f--~~~~i~~~I~TKlDET~ 352 (407)
T COG1419 281 DCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKY-EDLKEIIKQF--SLFPIDGLIFTKLDETT 352 (407)
T ss_pred cCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcch-HHHHHHHHHh--ccCCcceeEEEcccccC
Confidence 46899999999643 334455555544 3456688876322 1122222222 24555 47799999643
No 479
>PRK09602 translation-associated GTPase; Reviewed
Probab=61.71 E-value=4.4 Score=34.20 Aligned_cols=18 Identities=17% Similarity=-0.042 Sum_probs=14.7
Q ss_pred HHcCCCcEEEEECCcchh
Q psy2609 90 WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 90 ~~~~~p~ilv~NK~Dl~~ 107 (161)
....+|+|+|+||+|+..
T Consensus 214 l~t~KPvI~VlNK~D~~~ 231 (396)
T PRK09602 214 RKISKPMVIAANKADLPP 231 (396)
T ss_pred hhcCCCEEEEEEchhccc
Confidence 345799999999999763
No 480
>PRK13505 formate--tetrahydrofolate ligase; Provisional
Probab=60.22 E-value=22 Score=31.47 Aligned_cols=25 Identities=8% Similarity=0.046 Sum_probs=20.7
Q ss_pred HHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 83 QVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 83 ~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
..+++.++..++|+++++||.|.-.
T Consensus 362 ~RHIenvr~FGvPvVVAINKFd~DT 386 (557)
T PRK13505 362 ERHIENIRKFGVPVVVAINKFVTDT 386 (557)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCCCC
Confidence 4566777889999999999999743
No 481
>PRK13601 putative L7Ae-like ribosomal protein; Provisional
Probab=59.37 E-value=27 Score=22.74 Aligned_cols=50 Identities=8% Similarity=-0.036 Sum_probs=35.2
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..+++...+-++++..+-+ ......+...+...++|++.+.+|.+|-
T Consensus 14 ~~vlkaIk~gkakLViiA~Da~-~~~~k~i~~~c~~~~Vpv~~~~t~~eLG 63 (82)
T PRK13601 14 KQTLKAITNCNVLQVYIAKDAE-EHVTKKIKELCEEKSIKIVYIDTMKELG 63 (82)
T ss_pred HHHHHHHHcCCeeEEEEeCCCC-HHHHHHHHHHHHhCCCCEEEeCCHHHHH
Confidence 4577788877777777765533 3444555667778899999889888774
No 482
>PRK13602 putative ribosomal protein L7Ae-like; Provisional
Probab=59.12 E-value=29 Score=22.44 Aligned_cols=50 Identities=12% Similarity=-0.137 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..+++.-.+-++++..+-+. .....+...+...++|++.+.+|.+|-
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~~~~~i~~~c~~~~Vp~~~~~s~~eLG 66 (82)
T PRK13602 17 KQTVKALKRGSVKEVVVAEDADP-RLTEKVEALANEKGVPVSKVDSMKKLG 66 (82)
T ss_pred HHHHHHHHcCCeeEEEEECCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 46777787767777777655332 334455566777899999988887763
No 483
>KOG2743|consensus
Probab=58.44 E-value=73 Score=26.47 Aligned_cols=67 Identities=21% Similarity=0.178 Sum_probs=39.8
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHh--------cCEEEEEEeCCCCCChhH--------HHHHHHHHHcCCCcEEEEECC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRL--------CDGTIIVVDCVEGICAQT--------QVALKQAWLEKIQPILVLNKI 103 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~--------~d~~ilVvd~~~~~~~~~--------~~~~~~~~~~~~p~ilv~NK~ 103 (161)
.+-.+++-|.|...-.+.+...+.. -|+++-|+|+......-+ -+..+++. .-=-+++||.
T Consensus 145 kfD~IllETTGlAnPaPia~~Fw~dd~l~sdVkLDGIVTvvD~K~~~~~Lde~k~~g~i~EA~~QiA---~AD~II~NKt 221 (391)
T KOG2743|consen 145 KFDHILLETTGLANPAPIASMFWLDDELGSDVKLDGIVTVVDAKHILKHLDEEKPDGLINEATRQIA---LADRIIMNKT 221 (391)
T ss_pred CcceEEEeccCCCCcHHHHHHHhhhhhhcCceeeeeEEEEEehhhHHhhhcccCcccchHHHHHHHh---hhheeeeccc
Confidence 4567899999988766555444433 489999999973221100 01111111 1113679999
Q ss_pred cchhhh
Q psy2609 104 DRLILE 109 (161)
Q Consensus 104 Dl~~~~ 109 (161)
|+...+
T Consensus 222 Dli~~e 227 (391)
T KOG2743|consen 222 DLVSEE 227 (391)
T ss_pred cccCHH
Confidence 998754
No 484
>PRK13235 nifH nitrogenase reductase; Reviewed
Probab=57.08 E-value=12 Score=29.49 Aligned_cols=36 Identities=14% Similarity=0.040 Sum_probs=23.6
Q ss_pred ceeEEEEeCCCchhhHH-HHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSS-EVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~-~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++++||||.--... .+..++..||.+++++.+.
T Consensus 117 ~yD~ilID~~~~~~~~~l~~~~a~~aad~vlIp~~~e 153 (274)
T PRK13235 117 NLDYVFYDVLGDVVCGGFAMPIRDGKAEEIYIVCSGE 153 (274)
T ss_pred CCCEEEEECCCCCccCCcccccccccccEEEEEecCc
Confidence 57899999988531111 1222344789999999765
No 485
>KOG1980|consensus
Probab=56.63 E-value=17 Score=32.69 Aligned_cols=44 Identities=11% Similarity=0.105 Sum_probs=38.0
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV 99 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv 99 (161)
-.+..+++.+|.++|+..+......+.+.+++.+...++|-++.
T Consensus 133 ~~~lD~~kv~D~~~f~~s~~~~~~e~ge~i~~~~~~qGi~s~v~ 176 (754)
T KOG1980|consen 133 LNILDAAKVSDFVVFLLSAVEEDDEFGEQIIRALEAQGIPSYVS 176 (754)
T ss_pred hhhhhhhhhcceeeeecchhhhhhHHHHHHHHHHhhcCCcccee
Confidence 35788999999999999999877888899999999999997653
No 486
>cd02033 BchX Chlorophyllide reductase converts chlorophylls into bacteriochlorophylls by reducing the chlorin B-ring. This family contains the X subunit of this three-subunit enzyme. Sequence and structure similarity between bchX, protochlorophyllide reductase L subunit (bchL and chlL) and nitrogenase Fe protein (nifH gene) suggest their functional similarity. Members of the BchX family serve as the unique electron donors to their respective catalytic subunits (bchN-bchB, bchY-bchZ and nitrogenase component 1). Mechanistically, they hydrolyze ATP and transfer electrons through a Fe4-S4 cluster.
Probab=56.35 E-value=20 Score=29.47 Aligned_cols=62 Identities=21% Similarity=0.172 Sum_probs=32.9
Q ss_pred ceeEEEEeCCCchh---hHHHHHHHHHhcCEEEEEEeCCCCCChh-----HHHHHHHHHHc--CCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVD---FSSEVSTAVRLCDGTIIVVDCVEGICAQ-----TQVALKQAWLE--KIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~---~~~~~~~~l~~~d~~ilVvd~~~~~~~~-----~~~~~~~~~~~--~~p~i-lv~NK~Dl 105 (161)
.+-+.++||+|-.. |... .....+|.+++|.... +... ....+...... +.+++ +|+||.|.
T Consensus 147 ~~DyVliD~~gdv~~ggf~l~--i~~~~ad~VIVVt~pe--~~si~~A~~v~kai~~~~~lg~~~~i~GlViNr~d~ 219 (329)
T cd02033 147 DFDYVLLDFLGDVVCGGFGLP--IARDMAQKVIVVGSND--LQSLYVANNVCNAVEYFRKLGGNVGVAGMVINKDDG 219 (329)
T ss_pred cCCEEEEecCCcceeccccch--hhhcCCceEEEeCCch--HHHHHHHHHHHHHHHHHHHhCCCCCceEEEEeCcCC
Confidence 46799999999542 2211 1222366666665332 2111 12233444444 34554 89999985
No 487
>PRK13230 nitrogenase reductase-like protein; Reviewed
Probab=56.04 E-value=13 Score=29.26 Aligned_cols=36 Identities=22% Similarity=0.239 Sum_probs=24.1
Q ss_pred ceeEEEEeCCCchhhHH-HHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSS-EVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~-~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-+++|||||.--... .+...+..||.+|+++.++
T Consensus 116 ~yD~viID~~~~~~~~~l~~~~~~~aAD~vlIp~~p~ 152 (279)
T PRK13230 116 GPDVVIYDILGDVVCGGFAMPLQKGLADDVYIVTTCD 152 (279)
T ss_pred CCCEEEEecCCccccCCccccccccccceEEEeccch
Confidence 57899999998532111 1223445689999999876
No 488
>PF08937 DUF1863: MTH538 TIR-like domain (DUF1863); InterPro: IPR015032 This protein adopts the flavodoxin fold, that is, five parallel beta-strands and four helical segments. The structure is a three-layer sandwich with alpha-1 and alpha-4 on one side of the beta-sheet, and alpha-2 and alpha-3 on the other side. Probable role in signal transduction as a phosphorylation-independent conformational switch protein []. This domain is similar to the TIR domain [].; PDB: 3HYN_A.
Probab=55.53 E-value=34 Score=23.76 Aligned_cols=47 Identities=11% Similarity=0.034 Sum_probs=26.0
Q ss_pred hhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE
Q psy2609 53 DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV 99 (161)
Q Consensus 53 ~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv 99 (161)
.........++.++++|+++.....-+.+-..-+......+.|+|.|
T Consensus 59 ~ik~~I~~~i~~s~~~IVLig~~T~~s~wV~~EI~~A~~~~~~Ii~V 105 (130)
T PF08937_consen 59 YIKRKIRERIKNSSVTIVLIGPNTAKSKWVNWEIEYALKKGKPIIGV 105 (130)
T ss_dssp THHHHHHHHHHTEEEEEEE--TT----HHHHHHHHHHTTT---EEEE
T ss_pred HHHHHHHHHHhcCCEEEEEeCCCcccCcHHHHHHHHHHHCCCCEEEE
Confidence 56677889999999999999876433444433334444556676654
No 489
>cd07021 Clp_protease_NfeD_like Nodulation formation efficiency D (NfeD) is a membrane-bound ClpP-class protease. Nodulation formation efficiency D (NfeD; stomatin operon partner protein, STOPP; DUF107) is a member of membrane-anchored ClpP-class proteases. Currently, more than 300 NfeD homologs have been identified - all of which are bacterial or archaeal in origin. Majority of these genomes have been shown to possess operons containing a homologous NfeD/stomatin gene pair, causing NfeD to be previously named STOPP (stomatin operon partner protein). NfeD homologs can be divided into two groups: long and short forms. Long-form homologs have a putative ClpP-class serine protease domain while the short form homologs do not. Downstream from the ClpP-class domain is the so-called NfeD or DUF107 domain. N-terminal region of the NfeD homolog PH1510 (1510-N or PH1510-N) from Pyrococcus horikoshii has been shown to possess serine protease activity and has a Ser-Lys catalytic dyad, preferentiall
Probab=55.34 E-value=52 Score=24.47 Aligned_cols=53 Identities=19% Similarity=0.251 Sum_probs=34.7
Q ss_pred CCchhhHHH-HHHHHHh-cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEE
Q psy2609 49 PGHVDFSSE-VSTAVRL-CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLN 101 (161)
Q Consensus 49 pG~~~~~~~-~~~~l~~-~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~N 101 (161)
|+..++... ...+... ++.+++.+|.-.|.-.....+...+....+|++.++|
T Consensus 12 ~~~~~~l~~~l~~a~~~~~~~ivl~inspGG~v~~~~~I~~~l~~~~~pvva~V~ 66 (178)
T cd07021 12 PGLAAFVERALKEAKEEGADAVVLDIDTPGGRVDSALEIVDLILNSPIPTIAYVN 66 (178)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEECcCCCHHHHHHHHHHHHhCCCCEEEEEC
Confidence 444444333 3333333 5788888888777767677777777777788887777
No 490
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=55.18 E-value=19 Score=30.24 Aligned_cols=74 Identities=18% Similarity=0.205 Sum_probs=46.2
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecC-----------CCCCCceeEEEEeCCCch-------hhHHHH
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDN-----------KDTPEEYLINLIDSPGHV-------DFSSEV 58 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~-----------~~~~~~~~i~iiDTpG~~-------~~~~~~ 58 (161)
|+||||+++.... ..=|=.||+.+..-...... ++..-...+.|+|.+|.- -+...-
T Consensus 12 NVGKSTlFnAlT~~~a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~GAs~GeGLGNkF 91 (372)
T COG0012 12 NVGKSTLFNALTKAGAEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKGASKGEGLGNKF 91 (372)
T ss_pred CCcHHHHHHHHHcCCccccCCCcccccCCeeEEecCchHHHHHHHhcCCCCcEEeeeeEEEEecccCCCcccCCCcchHH
Confidence 7888888754421 22334555544333322110 011113469999999963 356677
Q ss_pred HHHHHhcCEEEEEEeCC
Q psy2609 59 STAVRLCDGTIIVVDCV 75 (161)
Q Consensus 59 ~~~l~~~d~~ilVvd~~ 75 (161)
...++.+|+++.|+++.
T Consensus 92 L~~IRevdaI~hVVr~f 108 (372)
T COG0012 92 LDNIREVDAIIHVVRCF 108 (372)
T ss_pred HHhhhhcCeEEEEEEec
Confidence 88999999999999986
No 491
>COG1358 RPL8A Ribosomal protein HS6-type (S12/L30/L7a) [Translation, ribosomal structure and biogenesis]
Probab=54.44 E-value=24 Score=24.55 Aligned_cols=53 Identities=11% Similarity=-0.006 Sum_probs=34.3
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
..++..++....+-++++..+-.+......+...+...++|.+.|.||..|-.
T Consensus 32 ~~e~~Kai~~g~a~LVviA~Dv~P~~~~~~l~~lc~~~~vpyv~V~sk~~LG~ 84 (116)
T COG1358 32 TNEVTKAIERGKAKLVVIAEDVSPEELVKHLPALCEEKNVPYVYVGSKKELGK 84 (116)
T ss_pred HHHHHHHHHcCCCcEEEEecCCCHHHHHHHHHHHHHhcCCCEEEeCCHHHHHH
Confidence 34566777775555555544433334444555666668999999999988743
No 492
>KOG2423|consensus
Probab=49.23 E-value=2.3 Score=36.18 Aligned_cols=45 Identities=20% Similarity=0.212 Sum_probs=26.3
Q ss_pred ccccccccCCchhHHHcCCccccceEEEE-eecCCCCCCceeEEEEeCCCc
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLY-YKDNKDTPEEYLINLIDSPGH 51 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~-~~~~~~~~~~~~i~iiDTpG~ 51 (161)
|+||+.+++.+..-.-+.+---....-++ |- .--..|.+|||||.
T Consensus 317 NvGKSSiINTLR~KkVCkvAPIpGETKVWQYI-----tLmkrIfLIDcPGv 362 (572)
T KOG2423|consen 317 NVGKSSIINTLRKKKVCKVAPIPGETKVWQYI-----TLMKRIFLIDCPGV 362 (572)
T ss_pred CCchHHHHHHHhhcccccccCCCCcchHHHHH-----HHHhceeEecCCCc
Confidence 78888888887655544443222211111 11 12357999999995
No 493
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=46.30 E-value=50 Score=21.65 Aligned_cols=51 Identities=14% Similarity=-0.054 Sum_probs=35.2
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.+++..+++...+-++++..+-. ......+...+...++|++.+-+|.||-
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~-~~vv~~l~~lceek~Ip~v~V~s~~~LG 68 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVE-VYLMTRVLSQINQKNIPVSFFKSKHALG 68 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 35677888776666666654432 2344566677788899999999988874
No 494
>PRK07714 hypothetical protein; Provisional
Probab=46.07 E-value=47 Score=22.13 Aligned_cols=50 Identities=12% Similarity=-0.006 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+..+++...+.++++..+- ....-..+...+...++|++.+.+|.+|-
T Consensus 24 ~~v~~al~~g~~~lViiA~D~-s~~~~~ki~~~~~~~~vp~~~~~sk~eLG 73 (100)
T PRK07714 24 ELVLKEVRSGKAKLVLLSEDA-SVNTTKKITDKCTYYNVPMRKVENRQQLG 73 (100)
T ss_pred HHHHHHHHhCCceEEEEeCCC-CHHHHHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 356677777676666665442 22333445555667799999888887763
No 495
>PRK12374 putative dithiobiotin synthetase; Provisional
Probab=45.93 E-value=95 Score=23.73 Aligned_cols=64 Identities=19% Similarity=0.135 Sum_probs=32.6
Q ss_pred ceeEEEEeCCC-----chh--hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPG-----HVD--FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG-----~~~--~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
.+-+.+++.+| ..+ ........+ .--+++|.+..-|.-..+....+.+...+++++ +++|+++-
T Consensus 105 ~~D~VlVEGaGgl~~p~~~~~~~~d~~~~~--~~pvilV~~~~lg~in~~lLt~~~l~~~~~~~~gvV~N~~~~ 176 (231)
T PRK12374 105 KVDHVVVEGTGGWRSLMNDLRPLSEWVVQE--QLPVLMVVGIQEGCINHALLTAQAIANDGLPLIGWVANRINP 176 (231)
T ss_pred hCCEEEEECCCCcceeccCcccHHHHHHHh--CCCEEEEECCCcChHHHHHHHHHHHHhCCCcEEEEEEeCccC
Confidence 45677888888 211 111111111 223344444444433333444455556677765 78899874
No 496
>PF01248 Ribosomal_L7Ae: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family; InterPro: IPR004038 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This family includes: Ribosomal L7A from metazoa, Ribosomal L8-A and L8-B from fungi, 30S ribosomal protein HS6 from archaebacteria, 40S ribosomal protein S12 from eukaryotes, ribosomal protein L30 from eukaryotes and archaebacteria, Gadd45 and MyD118 [].; PDB: 2CZW_A 3V7E_B 2QEX_F 1YJ9_F 1VQ8_F 1YJN_F 3I56_F 1VQ6_F 2OTJ_F 1YIJ_F ....
Probab=45.85 E-value=29 Score=22.56 Aligned_cols=51 Identities=12% Similarity=-0.009 Sum_probs=34.5
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..++..-.+-++++..+-........+...+...++|++.+.+|.+|-
T Consensus 21 ~~v~k~l~~~~~~lvilA~d~~~~~~~~~l~~~c~~~~Ip~~~~~s~~eLG 71 (95)
T PF01248_consen 21 KEVLKALKKGKAKLVILAEDCSPDSIKKHLPALCEEKNIPYVFVPSKEELG 71 (95)
T ss_dssp HHHHHHHHTTCESEEEEETTSSSGHHHHHHHHHHHHTTEEEEEESHHHHHH
T ss_pred HHHHHHHHcCCCcEEEEcCCCChhhhcccchhheeccceeEEEECCHHHHH
Confidence 456777777777777777664443333335566778899998888776653
No 497
>PRK01018 50S ribosomal protein L30e; Reviewed
Probab=45.82 E-value=53 Score=21.96 Aligned_cols=50 Identities=12% Similarity=-0.023 Sum_probs=34.0
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE-EECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv-~NK~Dl~ 106 (161)
.++..+++...+-++++..+- .......+...+...++|++.. .+|.+|-
T Consensus 22 ~~v~kai~~gkaklViiA~D~-~~~~~~~i~~~c~~~~Ip~~~~~~tk~eLG 72 (99)
T PRK01018 22 KRTIKAIKLGKAKLVIVASNC-PKDIKEDIEYYAKLSGIPVYEYEGSSVELG 72 (99)
T ss_pred HHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEECCCHHHHH
Confidence 456777887777777776552 2344455566677789998775 7887774
No 498
>PF05783 DLIC: Dynein light intermediate chain (DLIC); InterPro: IPR022780 This entry consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin [, ]. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo [].
Probab=45.50 E-value=36 Score=29.56 Aligned_cols=74 Identities=16% Similarity=0.192 Sum_probs=41.6
Q ss_pred ccccccccCCch--hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhc----CEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRK--DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC----DGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~--~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~----d~~ilVvd~~ 75 (161)
.+||++++.++. ++.++|...+..+ +....+ ..+...++.+|=..|-..+..+....+... -.+|+|+|.+
T Consensus 35 ~~GKttli~~L~~~e~~~~~~aLeYty--~~v~d~-~~dd~~rl~vw~L~g~~~~~~LLk~~lt~~~l~~t~vvIvlDlS 111 (472)
T PF05783_consen 35 GSGKTTLIARLQGIEDPKKGLALEYTY--LDVKDE-DRDDLARLNVWELDGDPSHSDLLKFALTPENLPNTLVVIVLDLS 111 (472)
T ss_pred CCchHHHHHHhhccCCCCCCcccceEE--EeeccC-cCCcCceeeEEEcCCCcchHhHhcccCCcccccceEEEEEecCC
Confidence 479999987774 3334454433322 222211 112335677777766555555555555432 2678899988
Q ss_pred CCC
Q psy2609 76 EGI 78 (161)
Q Consensus 76 ~~~ 78 (161)
.++
T Consensus 112 ~PW 114 (472)
T PF05783_consen 112 KPW 114 (472)
T ss_pred ChH
Confidence 654
No 499
>PRK13236 nitrogenase reductase; Reviewed
Probab=44.03 E-value=39 Score=27.09 Aligned_cols=65 Identities=15% Similarity=0.009 Sum_probs=33.9
Q ss_pred ceeEEEEeCCCchhhHH-HHHHHHHhcCEEEEEEeCCCCCChhHH----HHHHHHHHcCCCcE-EEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSS-EVSTAVRLCDGTIIVVDCVEGICAQTQ----VALKQAWLEKIQPI-LVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~-~~~~~l~~~d~~ilVvd~~~~~~~~~~----~~~~~~~~~~~p~i-lv~NK~D 104 (161)
.+-+.++||+|..-... ....++..||.+|+|+......-.... .+.+.....+.+++ +++|+.+
T Consensus 121 ~yD~vliD~~~~~~~~~~~~~~~l~aAD~vIIvttpe~~sl~g~~~~~~~l~k~~~~~~l~i~gIv~Nr~~ 191 (296)
T PRK13236 121 DLDFVSYDVLGDVVCGGFAMPIREGKAQEIYIVTSGEMMAMYAANNIARGILKYAHTGGVRLGGLICNSRN 191 (296)
T ss_pred cCCEEEEeccccceeccccccchhccCCEEEEecCcchHHHHHHHHHHHHHHHHhhCCCceeEEEEecCCC
Confidence 67789999986421101 111125688999999876421111111 12222223355654 6789754
No 500
>KOG2485|consensus
Probab=42.52 E-value=17 Score=30.00 Aligned_cols=43 Identities=26% Similarity=0.237 Sum_probs=25.7
Q ss_pred ccccccccCCch-----------hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCc
Q psy2609 2 LCMVSSYMDSRK-----------DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH 51 (161)
Q Consensus 2 ~~g~~~~~D~~~-----------~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~ 51 (161)
|.||+.++|... --.++|+|+..+..--... .-.+.++||||.
T Consensus 153 NVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~-------rp~vy~iDTPGi 206 (335)
T KOG2485|consen 153 NVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISH-------RPPVYLIDTPGI 206 (335)
T ss_pred CCChHHHHHHHHHHHhhhccceeccCCCCceeeehhheEecc-------CCceEEecCCCc
Confidence 556766665332 2235688887665322222 335899999994
Done!