Query psy2609
Match_columns 161
No_of_seqs 205 out of 1470
Neff 8.1
Searched_HMMs 29240
Date Fri Aug 16 20:35:28 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2609.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2609hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3vqt_A RF-3, peptide chain rel 99.9 7.4E-23 2.5E-27 175.4 9.9 97 6-109 72-168 (548)
2 4fn5_A EF-G 1, elongation fact 99.9 1.6E-22 5.6E-27 177.8 12.1 107 4-110 48-154 (709)
3 3j25_A Tetracycline resistance 99.9 1.6E-22 5.6E-27 176.0 4.3 98 5-109 38-135 (638)
4 3j2k_7 ERF3, eukaryotic polype 99.8 1.2E-18 4.2E-23 145.6 11.1 94 7-107 68-169 (439)
5 1n0u_A EF-2, elongation factor 99.8 3E-18 1E-22 153.1 12.8 129 4-132 52-189 (842)
6 3cb4_D GTP-binding protein LEP 99.8 3.8E-18 1.3E-22 147.5 11.2 101 7-109 39-139 (599)
7 3tr5_A RF-3, peptide chain rel 99.8 2.7E-18 9.1E-23 146.6 9.9 93 10-109 58-150 (528)
8 2ywe_A GTP-binding protein LEP 99.7 3.3E-18 1.1E-22 147.8 10.3 101 7-109 41-141 (600)
9 1wb1_A Translation elongation 99.7 3.2E-18 1.1E-22 144.6 9.5 100 2-108 29-140 (482)
10 2c78_A Elongation factor TU-A; 99.7 2.8E-17 9.7E-22 135.8 10.6 92 9-107 50-142 (405)
11 1kk1_A EIF2gamma; initiation o 99.7 2.9E-17 1E-21 135.8 10.2 108 2-109 20-153 (410)
12 1f60_A Elongation factor EEF1A 99.7 1.6E-17 5.3E-22 139.6 7.5 91 10-107 61-159 (458)
13 2rdo_7 EF-G, elongation factor 99.7 1.4E-16 4.8E-21 140.0 13.3 103 7-109 48-150 (704)
14 2elf_A Protein translation elo 99.7 4E-17 1.4E-21 133.8 8.6 93 2-105 31-125 (370)
15 1s0u_A EIF-2-gamma, translatio 99.7 7E-17 2.4E-21 133.6 9.3 108 2-109 18-151 (408)
16 3p26_A Elongation factor 1 alp 99.7 3.7E-16 1.3E-20 131.9 13.4 94 7-107 84-185 (483)
17 1zun_B Sulfate adenylate trans 99.7 1.8E-16 6.1E-21 132.1 11.2 92 9-107 79-171 (434)
18 2h5e_A Peptide chain release f 99.7 1.6E-16 5.5E-21 135.7 10.7 96 7-109 55-150 (529)
19 1d2e_A Elongation factor TU (E 99.7 3.9E-17 1.3E-21 134.7 6.4 87 14-107 46-133 (397)
20 1r5b_A Eukaryotic peptide chai 99.7 1.1E-16 3.9E-21 134.6 9.1 94 7-107 94-195 (467)
21 1jny_A EF-1-alpha, elongation 99.7 8.6E-17 3E-21 134.1 6.5 93 8-107 58-158 (435)
22 1dar_A EF-G, elongation factor 99.6 9.2E-16 3.1E-20 134.6 12.6 96 7-109 50-145 (691)
23 1wf3_A GTP-binding protein; GT 99.6 4.6E-17 1.6E-21 130.0 3.4 100 2-108 17-132 (301)
24 2xex_A Elongation factor G; GT 99.6 1.3E-15 4.6E-20 133.6 11.8 96 7-109 48-143 (693)
25 3iev_A GTP-binding protein ERA 99.6 2.2E-16 7.6E-21 126.2 4.7 99 2-106 20-135 (308)
26 3mca_A HBS1, elongation factor 99.6 1.2E-17 4.2E-22 144.2 -4.3 95 6-107 227-329 (592)
27 1zo1_I IF2, translation initia 99.6 4.7E-17 1.6E-21 138.0 -1.2 100 2-108 14-118 (501)
28 1mky_A Probable GTP-binding pr 99.6 2.9E-15 9.9E-20 124.9 9.1 99 2-107 11-124 (439)
29 4dkx_A RAS-related protein RAB 99.6 6.9E-16 2.4E-20 117.7 4.3 102 2-108 23-133 (216)
30 3izq_1 HBS1P, elongation facto 99.6 1.7E-15 5.9E-20 131.2 6.9 92 9-107 220-319 (611)
31 2dyk_A GTP-binding protein; GT 99.6 5.5E-15 1.9E-19 105.2 7.9 100 2-108 11-123 (161)
32 3sjy_A Translation initiation 99.6 1.2E-15 4.3E-20 125.9 4.6 69 41-109 75-145 (403)
33 3avx_A Elongation factor TS, e 99.6 4.6E-15 1.6E-19 135.3 8.6 92 9-107 334-426 (1289)
34 2dy1_A Elongation factor G; tr 99.6 5.6E-14 1.9E-18 122.8 15.0 93 7-106 47-139 (665)
35 2lkc_A Translation initiation 99.6 6.1E-16 2.1E-20 112.1 1.8 99 2-107 18-121 (178)
36 3llu_A RAS-related GTP-binding 99.6 1.5E-14 5E-19 107.4 9.1 103 2-108 30-144 (196)
37 2il1_A RAB12; G-protein, GDP, 99.5 1E-14 3.6E-19 107.8 8.0 102 2-108 36-146 (192)
38 1wms_A RAB-9, RAB9, RAS-relate 99.5 1.4E-15 4.9E-20 110.0 2.9 100 2-106 17-129 (177)
39 4dhe_A Probable GTP-binding pr 99.5 6E-15 2E-19 111.0 5.8 102 2-109 39-160 (223)
40 3izy_P Translation initiation 99.5 7.8E-17 2.7E-21 137.7 -5.3 102 2-109 14-120 (537)
41 4bas_A ADP-ribosylation factor 99.5 3.2E-15 1.1E-19 110.3 4.0 100 2-108 27-142 (199)
42 2hjg_A GTP-binding protein ENG 99.5 3.8E-15 1.3E-19 124.1 4.6 100 2-108 13-126 (436)
43 4dcu_A GTP-binding protein ENG 99.5 4.7E-15 1.6E-19 124.2 5.1 100 2-108 205-321 (456)
44 3t1o_A Gliding protein MGLA; G 99.5 5E-15 1.7E-19 108.7 4.5 71 38-108 71-150 (198)
45 2hup_A RAS-related protein RAB 99.5 1.9E-14 6.4E-19 107.4 7.6 102 2-108 39-149 (201)
46 2fh5_B SR-beta, signal recogni 99.5 3.3E-14 1.1E-18 106.5 8.9 103 2-109 17-131 (214)
47 3tkl_A RAS-related protein RAB 99.5 2E-15 6.7E-20 111.2 2.0 102 2-108 26-136 (196)
48 1g7s_A Translation initiation 99.5 2.1E-15 7.3E-20 130.2 2.3 106 2-107 15-136 (594)
49 1ek0_A Protein (GTP-binding pr 99.5 1.2E-14 4.1E-19 104.0 5.9 102 2-108 13-123 (170)
50 2efe_B Small GTP-binding prote 99.5 1.2E-14 4.2E-19 105.4 5.9 102 2-108 22-132 (181)
51 1r8s_A ADP-ribosylation factor 99.5 3E-14 1E-18 101.8 7.8 100 2-108 10-116 (164)
52 3tw8_B RAS-related protein RAB 99.5 1.2E-15 4.3E-20 110.4 0.4 102 2-108 19-128 (181)
53 1z06_A RAS-related protein RAB 99.5 1.2E-14 4E-19 106.9 5.7 102 2-108 30-142 (189)
54 3dz8_A RAS-related protein RAB 99.5 2.6E-15 8.8E-20 110.8 2.0 102 2-108 33-143 (191)
55 1g16_A RAS-related protein SEC 99.5 2.1E-15 7.3E-20 108.1 1.5 100 2-106 13-121 (170)
56 2p5s_A RAS and EF-hand domain 99.5 3.1E-14 1.1E-18 105.7 7.7 101 2-107 38-147 (199)
57 2hxs_A RAB-26, RAS-related pro 99.5 1.7E-14 5.7E-19 104.5 6.0 103 2-108 16-130 (178)
58 2ew1_A RAS-related protein RAB 99.5 5.4E-15 1.8E-19 110.9 3.2 102 2-108 36-146 (201)
59 2y8e_A RAB-protein 6, GH09086P 99.5 5.2E-15 1.8E-19 106.9 2.9 102 2-108 24-134 (179)
60 2wji_A Ferrous iron transport 99.5 1.6E-14 5.3E-19 104.5 5.4 98 2-108 13-123 (165)
61 1kao_A RAP2A; GTP-binding prot 99.5 8.2E-15 2.8E-19 104.5 3.8 101 2-108 13-123 (167)
62 1r2q_A RAS-related protein RAB 99.5 7.9E-15 2.7E-19 105.0 3.6 102 2-108 16-126 (170)
63 1z2a_A RAS-related protein RAB 99.5 4.7E-15 1.6E-19 106.1 2.3 102 2-108 15-124 (168)
64 2hjg_A GTP-binding protein ENG 99.5 9.7E-15 3.3E-19 121.7 4.4 100 2-108 185-301 (436)
65 2fu5_C RAS-related protein RAB 99.5 6E-15 2E-19 107.6 2.8 101 2-107 18-127 (183)
66 2g6b_A RAS-related protein RAB 99.5 2.1E-15 7.1E-20 109.5 0.3 101 2-107 20-130 (180)
67 3q85_A GTP-binding protein REM 99.5 7.6E-15 2.6E-19 105.5 3.2 102 2-108 12-124 (169)
68 1svi_A GTP-binding protein YSX 99.5 3.2E-14 1.1E-18 104.6 6.6 98 2-109 33-150 (195)
69 3qq5_A Small GTP-binding prote 99.5 2.9E-14 1E-18 118.7 7.1 100 2-109 44-156 (423)
70 1ky3_A GTP-binding protein YPT 99.5 6.6E-15 2.3E-19 106.6 2.7 104 2-109 18-134 (182)
71 2a5j_A RAS-related protein RAB 99.5 6.3E-15 2.2E-19 108.7 2.6 102 2-108 31-141 (191)
72 1z0j_A RAB-22, RAS-related pro 99.5 3.8E-15 1.3E-19 106.8 1.4 102 2-108 16-126 (170)
73 3iby_A Ferrous iron transport 99.5 4.4E-15 1.5E-19 115.9 1.8 132 2-144 11-160 (256)
74 2bme_A RAB4A, RAS-related prot 99.5 1.3E-14 4.4E-19 105.9 4.2 102 2-108 20-130 (186)
75 2yc2_C IFT27, small RAB-relate 99.5 2.5E-14 8.5E-19 106.0 5.6 101 2-107 30-146 (208)
76 3cph_A RAS-related protein SEC 99.5 4E-15 1.4E-19 111.0 1.1 100 2-106 30-138 (213)
77 1z08_A RAS-related protein RAB 99.5 1.1E-14 3.7E-19 104.6 3.3 102 2-108 16-126 (170)
78 1z0f_A RAB14, member RAS oncog 99.5 4.4E-14 1.5E-18 102.0 6.5 102 2-108 25-135 (179)
79 1vg8_A RAS-related protein RAB 99.5 1.3E-15 4.4E-20 113.2 -1.8 100 2-106 18-130 (207)
80 1zbd_A Rabphilin-3A; G protein 99.5 3.1E-14 1.1E-18 105.7 5.7 101 2-107 18-127 (203)
81 3kkq_A RAS-related protein M-R 99.5 9.6E-15 3.3E-19 106.5 2.9 100 2-107 28-137 (183)
82 2h57_A ADP-ribosylation factor 99.5 1E-14 3.5E-19 107.3 3.0 99 2-107 31-140 (190)
83 1upt_A ARL1, ADP-ribosylation 99.5 9.4E-15 3.2E-19 105.0 2.6 100 2-108 17-123 (171)
84 3pqc_A Probable GTP-binding pr 99.5 9.8E-14 3.3E-18 101.6 8.1 97 2-108 33-148 (195)
85 1zd9_A ADP-ribosylation factor 99.5 4.8E-14 1.7E-18 103.8 6.4 100 2-108 32-139 (188)
86 1u8z_A RAS-related protein RAL 99.5 2.5E-14 8.4E-19 102.0 4.5 102 2-108 14-124 (168)
87 3gj0_A GTP-binding nuclear pro 99.5 2.8E-14 9.7E-19 107.6 5.1 102 2-108 25-134 (221)
88 2fg5_A RAB-22B, RAS-related pr 99.5 2.4E-14 8.3E-19 105.7 4.5 101 2-107 33-142 (192)
89 1ega_A Protein (GTP-binding pr 99.5 9.8E-16 3.3E-20 122.1 -3.4 98 2-107 18-130 (301)
90 2erx_A GTP-binding protein DI- 99.5 2E-14 6.9E-19 103.0 3.8 102 2-108 13-124 (172)
91 2gj8_A MNME, tRNA modification 99.5 4.7E-14 1.6E-18 102.9 5.8 99 2-107 14-129 (172)
92 3i8s_A Ferrous iron transport 99.5 7.4E-15 2.5E-19 115.5 1.5 99 2-109 13-128 (274)
93 3l0i_B RAS-related protein RAB 99.5 5.7E-15 2E-19 109.7 0.7 102 2-108 43-153 (199)
94 3th5_A RAS-related C3 botulinu 99.2 4.3E-15 1.5E-19 110.6 0.0 101 2-108 40-149 (204)
95 3r7w_A Gtpase1, GTP-binding pr 99.5 4.1E-14 1.4E-18 112.9 5.6 100 2-107 13-129 (307)
96 3q72_A GTP-binding protein RAD 99.5 6.4E-15 2.2E-19 105.5 0.7 99 2-108 12-121 (166)
97 3reg_A RHO-like small GTPase; 99.5 9.4E-15 3.2E-19 107.9 1.6 101 2-108 33-142 (194)
98 2fn4_A P23, RAS-related protei 99.5 1.4E-14 4.8E-19 104.8 2.4 101 2-108 19-129 (181)
99 3bc1_A RAS-related protein RAB 99.5 6.5E-14 2.2E-18 102.3 6.0 69 40-108 69-142 (195)
100 4dcu_A GTP-binding protein ENG 99.5 3.3E-14 1.1E-18 119.0 5.0 100 2-108 33-146 (456)
101 4dsu_A GTPase KRAS, isoform 2B 99.5 1.2E-14 4E-19 106.1 1.9 101 2-107 14-123 (189)
102 1zj6_A ADP-ribosylation factor 99.5 2.5E-14 8.6E-19 105.0 3.5 99 2-107 26-131 (187)
103 2gf9_A RAS-related protein RAB 99.5 7.2E-15 2.5E-19 108.1 0.5 102 2-108 32-142 (189)
104 4gzl_A RAS-related C3 botulinu 99.5 1.6E-14 5.5E-19 108.0 2.3 101 2-108 40-149 (204)
105 1c1y_A RAS-related protein RAP 99.5 8.3E-14 2.8E-18 99.5 5.9 101 2-108 13-123 (167)
106 3cbq_A GTP-binding protein REM 99.5 9.4E-14 3.2E-18 103.3 6.4 101 2-107 33-144 (195)
107 2f7s_A C25KG, RAS-related prot 99.4 3.5E-14 1.2E-18 106.5 3.9 107 2-108 35-156 (217)
108 1f6b_A SAR1; gtpases, N-termin 99.4 3.1E-14 1.1E-18 106.1 3.4 99 2-107 35-140 (198)
109 1mh1_A RAC1; GTP-binding, GTPa 99.4 2.2E-14 7.5E-19 104.4 2.5 101 2-108 15-124 (186)
110 2a9k_A RAS-related protein RAL 99.4 8.3E-14 2.9E-18 101.2 5.5 102 2-108 28-138 (187)
111 2o52_A RAS-related protein RAB 99.4 4.1E-14 1.4E-18 105.3 3.9 102 2-108 35-145 (200)
112 1x3s_A RAS-related protein RAB 99.4 4.6E-14 1.6E-18 103.5 3.9 101 2-107 25-135 (195)
113 2h17_A ADP-ribosylation factor 99.4 4.5E-14 1.5E-18 103.3 3.8 99 2-107 31-136 (181)
114 4djt_A GTP-binding nuclear pro 99.4 7.4E-15 2.5E-19 110.3 -0.4 105 2-108 21-132 (218)
115 1m2o_B GTP-binding protein SAR 99.4 5.7E-14 1.9E-18 103.9 4.2 99 2-107 33-138 (190)
116 2oil_A CATX-8, RAS-related pro 99.4 3.9E-14 1.3E-18 104.3 3.1 102 2-108 35-145 (193)
117 1fzq_A ADP-ribosylation factor 99.4 1.5E-13 5.3E-18 100.7 6.3 100 2-108 26-132 (181)
118 3t5g_A GTP-binding protein RHE 99.4 6.6E-15 2.2E-19 107.2 -1.1 100 2-107 16-125 (181)
119 1ksh_A ARF-like protein 2; sma 99.4 3.2E-14 1.1E-18 104.0 2.6 100 2-108 28-134 (186)
120 2nzj_A GTP-binding protein REM 99.4 3.2E-14 1.1E-18 102.6 2.4 102 2-108 14-126 (175)
121 2bcg_Y Protein YP2, GTP-bindin 99.4 4E-14 1.4E-18 105.4 2.9 101 2-107 18-127 (206)
122 2wjg_A FEOB, ferrous iron tran 99.4 6.3E-14 2.1E-18 102.5 3.8 99 2-109 17-128 (188)
123 2bov_A RAla, RAS-related prote 99.4 2.1E-13 7.1E-18 101.0 6.6 102 2-108 24-134 (206)
124 2b6h_A ADP-ribosylation factor 99.4 6.8E-14 2.3E-18 103.7 4.0 100 2-108 39-145 (192)
125 3cpj_B GTP-binding protein YPT 99.4 3.6E-14 1.2E-18 107.3 2.4 101 2-107 23-132 (223)
126 3k53_A Ferrous iron transport 99.4 4.1E-14 1.4E-18 110.7 2.8 99 2-109 13-125 (271)
127 3gee_A MNME, tRNA modification 99.4 5.5E-14 1.9E-18 118.6 3.5 99 2-109 243-359 (476)
128 3clv_A RAB5 protein, putative; 99.4 2.6E-13 9.1E-18 99.5 6.8 65 41-105 93-159 (208)
129 2gf0_A GTP-binding protein DI- 99.4 4.4E-14 1.5E-18 104.1 2.5 101 2-107 18-128 (199)
130 3a1s_A Iron(II) transport prot 99.4 5.8E-14 2E-18 109.6 3.2 98 2-108 15-125 (258)
131 3oes_A GTPase rhebl1; small GT 99.4 5.9E-15 2E-19 109.8 -2.5 102 2-108 34-144 (201)
132 2ce2_X GTPase HRAS; signaling 99.4 6E-14 2E-18 99.7 2.9 101 2-107 13-122 (166)
133 3ihw_A Centg3; RAS, centaurin, 99.4 9.4E-14 3.2E-18 102.3 3.9 96 2-107 30-133 (184)
134 3con_A GTPase NRAS; structural 99.4 3.8E-14 1.3E-18 104.0 1.6 101 2-107 31-140 (190)
135 3q3j_B RHO-related GTP-binding 99.4 8.9E-14 3.1E-18 104.9 3.3 100 2-107 37-145 (214)
136 2j1l_A RHO-related GTP-binding 99.4 1.4E-13 4.7E-18 103.6 3.7 101 2-108 44-153 (214)
137 1xzp_A Probable tRNA modificat 99.4 4.6E-13 1.6E-17 113.2 7.3 97 2-107 253-364 (482)
138 2j0v_A RAC-like GTP-binding pr 99.4 1E-14 3.6E-19 109.0 -2.5 101 2-108 19-128 (212)
139 2atx_A Small GTP binding prote 99.4 6.5E-14 2.2E-18 103.2 1.7 101 2-108 28-137 (194)
140 2q3h_A RAS homolog gene family 99.4 1.1E-13 3.7E-18 102.5 3.0 100 2-107 30-138 (201)
141 3bwd_D RAC-like GTP-binding pr 99.4 1.2E-14 4E-19 105.7 -2.4 71 38-108 53-127 (182)
142 2gco_A H9, RHO-related GTP-bin 99.4 1.1E-13 3.6E-18 103.1 2.7 101 2-108 35-144 (201)
143 1moz_A ARL1, ADP-ribosylation 99.4 9.1E-14 3.1E-18 101.1 2.0 99 2-107 28-133 (183)
144 2x77_A ADP-ribosylation factor 99.4 7.6E-14 2.6E-18 102.4 1.6 100 2-108 32-138 (189)
145 3r7w_B Gtpase2, GTP-binding pr 99.4 8.2E-13 2.8E-17 106.6 7.6 98 2-108 9-121 (331)
146 2xtp_A GTPase IMAP family memb 99.4 5.9E-13 2E-17 103.0 6.3 98 2-107 32-153 (260)
147 1nrj_B SR-beta, signal recogni 99.4 8.9E-13 3.1E-17 98.8 7.1 101 2-108 22-135 (218)
148 3lxw_A GTPase IMAP family memb 99.4 7.5E-13 2.6E-17 102.5 6.6 98 2-107 31-153 (247)
149 2fv8_A H6, RHO-related GTP-bin 99.4 2.3E-13 8E-18 101.6 3.5 101 2-108 35-144 (207)
150 2atv_A RERG, RAS-like estrogen 99.4 1E-12 3.5E-17 97.1 6.7 100 2-108 38-147 (196)
151 1m7b_A RND3/RHOE small GTP-bin 99.4 1.9E-13 6.6E-18 100.1 2.7 100 2-107 17-125 (184)
152 1gwn_A RHO-related GTP-binding 99.3 2.5E-13 8.5E-18 101.9 2.6 100 2-107 38-146 (205)
153 3o47_A ADP-ribosylation factor 99.3 5.7E-13 1.9E-17 107.3 4.6 100 2-108 175-281 (329)
154 2iwr_A Centaurin gamma 1; ANK 99.3 8.4E-13 2.9E-17 95.7 4.5 94 2-106 17-121 (178)
155 1mky_A Probable GTP-binding pr 99.3 1.6E-12 5.4E-17 108.3 6.6 100 2-108 190-307 (439)
156 2g3y_A GTP-binding protein GEM 99.3 2.7E-13 9.2E-18 102.8 1.6 101 2-107 47-159 (211)
157 3c5c_A RAS-like protein 12; GD 99.3 1.1E-12 3.9E-17 96.5 4.8 100 2-108 31-142 (187)
158 3b1v_A Ferrous iron uptake tra 99.3 3E-13 1E-17 106.5 1.5 97 2-108 13-122 (272)
159 3t5d_A Septin-7; GTP-binding p 99.3 1E-11 3.4E-16 97.3 10.1 101 2-108 18-159 (274)
160 3lvq_E ARF-GAP with SH3 domain 99.3 6.2E-13 2.1E-17 112.0 3.4 99 2-107 332-437 (497)
161 2qu8_A Putative nucleolar GTP- 99.3 4.3E-12 1.5E-16 96.3 7.1 100 2-108 39-157 (228)
162 3geh_A MNME, tRNA modification 99.3 8E-13 2.7E-17 111.2 3.2 98 2-108 234-345 (462)
163 2qpt_A EH domain-containing pr 99.3 3E-12 1E-16 109.7 6.5 69 41-109 154-234 (550)
164 2ged_A SR-beta, signal recogni 99.3 7.7E-13 2.6E-17 97.2 2.5 102 2-109 58-172 (193)
165 2zej_A Dardarin, leucine-rich 99.3 8.4E-13 2.9E-17 96.9 2.6 105 2-108 12-127 (184)
166 2wkq_A NPH1-1, RAS-related C3 99.3 6.5E-13 2.2E-17 105.3 1.6 100 2-107 165-273 (332)
167 2cjw_A GTP-binding protein GEM 99.2 1.2E-12 4.2E-17 97.0 1.7 101 2-107 16-128 (192)
168 3lxx_A GTPase IMAP family memb 99.2 1.7E-11 5.9E-16 93.7 8.2 99 2-108 39-160 (239)
169 1jwy_B Dynamin A GTPase domain 99.2 4.5E-12 1.5E-16 100.4 4.4 69 40-108 130-213 (315)
170 3def_A T7I23.11 protein; chlor 99.2 9.6E-12 3.3E-16 96.8 5.9 99 2-107 46-165 (262)
171 2cxx_A Probable GTP-binding pr 99.2 3.4E-11 1.1E-15 87.7 7.9 96 2-108 11-137 (190)
172 1h65_A Chloroplast outer envel 99.2 6.3E-11 2.2E-15 92.4 9.5 100 2-108 49-169 (270)
173 2f9l_A RAB11B, member RAS onco 99.2 2E-11 6.7E-16 90.5 4.8 101 2-107 15-124 (199)
174 2aka_B Dynamin-1; fusion prote 99.2 3.8E-11 1.3E-15 94.2 6.0 69 40-108 124-207 (299)
175 3dpu_A RAB family protein; roc 99.1 2.1E-11 7.1E-16 103.8 2.8 102 2-108 51-165 (535)
176 1lnz_A SPO0B-associated GTP-bi 99.1 5.6E-11 1.9E-15 96.4 4.4 101 2-108 168-289 (342)
177 2qtf_A Protein HFLX, GTP-bindi 99.1 4E-10 1.4E-14 92.0 8.9 98 2-107 189-306 (364)
178 4fid_A G protein alpha subunit 99.1 1.5E-10 5E-15 93.9 5.6 83 19-108 146-243 (340)
179 1pui_A ENGB, probable GTP-bind 99.0 6.9E-10 2.4E-14 82.4 8.5 97 2-108 36-152 (210)
180 2j69_A Bacterial dynamin-like 99.0 2E-10 6.8E-15 100.8 5.9 68 41-108 174-245 (695)
181 3t34_A Dynamin-related protein 99.0 1.7E-10 5.7E-15 93.6 4.9 69 40-108 135-218 (360)
182 1cip_A Protein (guanine nucleo 99.0 1.6E-10 5.5E-15 94.1 3.6 82 20-108 179-275 (353)
183 1oix_A RAS-related protein RAB 99.0 1.2E-10 4E-15 86.1 2.6 101 2-107 39-148 (191)
184 1azs_C GS-alpha; complex (lyas 99.0 5.7E-10 1.9E-14 92.3 6.0 69 40-108 216-299 (402)
185 3ohm_A Guanine nucleotide-bind 98.9 5.6E-10 1.9E-14 90.0 5.1 83 20-109 153-250 (327)
186 2x2e_A Dynamin-1; nitration, h 98.9 1.2E-09 4.1E-14 88.4 7.0 69 40-108 129-212 (353)
187 1zcb_A G alpha I/13; GTP-bindi 98.9 3.6E-10 1.2E-14 92.3 3.2 69 40-108 200-283 (362)
188 2xtz_A Guanine nucleotide-bind 98.9 4.6E-10 1.6E-14 91.4 2.7 70 39-108 181-265 (354)
189 2e87_A Hypothetical protein PH 98.9 1.4E-09 4.7E-14 88.2 5.0 100 2-108 177-295 (357)
190 2qag_A Septin-2, protein NEDD5 98.9 9.8E-10 3.3E-14 89.5 3.8 68 40-108 94-189 (361)
191 3c5h_A Glucocorticoid receptor 98.9 2.8E-11 9.6E-16 93.8 -5.3 44 64-107 162-212 (255)
192 1wxq_A GTP-binding protein; st 98.8 1E-09 3.6E-14 90.5 3.1 76 2-77 10-114 (397)
193 1u0l_A Probable GTPase ENGC; p 98.6 1.7E-09 5.8E-14 85.9 -2.2 65 42-108 64-130 (301)
194 4a9a_A Ribosome-interacting GT 98.6 3.2E-08 1.1E-12 81.1 4.9 97 2-106 82-195 (376)
195 3zvr_A Dynamin-1; hydrolase, D 98.6 1.4E-07 4.7E-12 83.6 8.7 69 40-108 149-232 (772)
196 1yrb_A ATP(GTP)binding protein 98.4 4.7E-07 1.6E-11 69.3 6.1 68 40-108 108-186 (262)
197 2www_A Methylmalonic aciduria 98.3 8.1E-08 2.8E-12 77.8 0.6 61 40-107 166-226 (349)
198 2p67_A LAO/AO transport system 98.3 2.9E-07 9.9E-12 74.2 3.7 62 40-108 148-209 (341)
199 1jal_A YCHF protein; nucleotid 98.3 7E-07 2.4E-11 72.9 5.0 75 2-76 12-108 (363)
200 3p32_A Probable GTPase RV1496/ 98.3 2.5E-07 8.5E-12 74.9 2.2 62 40-108 171-232 (355)
201 1udx_A The GTP-binding protein 98.2 1E-06 3.5E-11 73.1 4.0 101 2-108 167-284 (416)
202 2qnr_A Septin-2, protein NEDD5 98.2 2.4E-06 8.4E-11 67.7 5.6 70 38-108 73-170 (301)
203 2qag_C Septin-7; cell cycle, c 98.1 3E-06 1E-10 70.3 4.7 68 40-108 87-182 (418)
204 1puj_A YLQF, conserved hypothe 98.0 1.2E-05 4.1E-10 63.2 7.1 61 46-108 4-65 (282)
205 2ohf_A Protein OLA1, GTP-bindi 98.0 2.6E-06 9E-11 70.2 2.9 75 2-76 32-128 (396)
206 2yv5_A YJEQ protein; hydrolase 98.0 1.1E-06 3.7E-11 69.7 0.5 71 38-108 47-125 (302)
207 2dby_A GTP-binding protein; GD 97.9 1.6E-05 5.6E-10 64.8 6.0 75 2-76 11-111 (368)
208 3l82_B F-box only protein 4; T 97.7 5E-05 1.7E-09 57.7 6.0 58 50-107 111-177 (227)
209 3ec1_A YQEH GTPase; atnos1, at 97.7 3.7E-07 1.3E-11 74.4 -7.0 98 2-109 172-290 (369)
210 2wsm_A Hydrogenase expression/ 97.6 4.4E-06 1.5E-10 62.2 -1.3 62 40-108 108-169 (221)
211 2j37_W Signal recognition part 97.6 0.00013 4.5E-09 61.8 7.4 66 39-107 182-254 (504)
212 3cnl_A YLQF, putative uncharac 97.6 1.5E-05 5.1E-10 62.0 1.0 56 49-108 5-61 (262)
213 3ec1_A YQEH GTPase; atnos1, at 97.6 5.3E-05 1.8E-09 61.6 4.1 63 43-108 51-113 (369)
214 2qag_B Septin-6, protein NEDD5 97.5 0.00011 3.7E-09 61.1 5.5 42 67-109 151-192 (427)
215 3h2y_A GTPase family protein; 97.5 9.7E-07 3.3E-11 72.0 -7.0 98 2-109 170-289 (368)
216 3l2o_B F-box only protein 4; s 97.4 0.00023 7.8E-09 56.5 5.6 60 48-107 194-262 (312)
217 3h2y_A GTPase family protein; 97.4 7.6E-05 2.6E-09 60.7 2.8 57 50-108 55-111 (368)
218 3sop_A Neuronal-specific septi 97.1 0.0036 1.2E-07 48.6 9.3 44 65-109 112-156 (270)
219 1ni3_A YCHF GTPase, YCHF GTP-b 96.9 0.00053 1.8E-08 56.3 3.0 75 2-76 30-127 (392)
220 4dzz_A Plasmid partitioning pr 96.8 0.0039 1.3E-07 45.3 7.3 64 40-106 75-143 (206)
221 1j8m_F SRP54, signal recogniti 96.8 0.0036 1.2E-07 49.3 7.4 65 39-106 179-252 (297)
222 2ph1_A Nucleotide-binding prot 96.8 0.004 1.4E-07 47.6 7.5 67 39-105 127-194 (262)
223 2v3c_C SRP54, signal recogniti 96.6 0.0054 1.9E-07 50.9 7.7 64 40-106 180-251 (432)
224 1t9h_A YLOQ, probable GTPase E 96.5 0.0019 6.6E-08 51.3 4.1 50 58-108 80-132 (307)
225 2qm8_A GTPase/ATPase; G protei 96.5 0.0011 3.8E-08 53.1 2.7 60 40-106 147-206 (337)
226 3dm5_A SRP54, signal recogniti 96.4 0.0081 2.8E-07 50.1 7.3 64 40-106 182-252 (443)
227 3kl4_A SRP54, signal recogniti 96.2 0.011 3.6E-07 49.2 6.8 65 40-106 179-251 (433)
228 3bfv_A CAPA1, CAPB2, membrane 96.0 0.016 5.5E-07 44.8 6.4 66 40-106 191-257 (271)
229 2xxa_A Signal recognition part 95.9 0.026 9E-07 46.7 7.8 64 40-106 183-253 (433)
230 3cwq_A Para family chromosome 95.8 0.0095 3.3E-07 44.1 4.5 65 40-106 67-133 (209)
231 1hyq_A MIND, cell division inh 95.8 0.013 4.4E-07 44.4 5.3 65 40-106 110-175 (263)
232 1g3q_A MIND ATPase, cell divis 95.8 0.011 3.7E-07 44.0 4.7 65 40-106 111-176 (237)
233 3la6_A Tyrosine-protein kinase 95.7 0.02 6.7E-07 44.8 6.1 66 40-106 201-267 (286)
234 1f5n_A Interferon-induced guan 95.6 0.0024 8.3E-08 55.0 0.5 86 2-87 48-143 (592)
235 3kjh_A CO dehydrogenase/acetyl 95.6 0.0087 3E-07 44.6 3.4 64 40-105 131-195 (254)
236 3cio_A ETK, tyrosine-protein k 95.5 0.04 1.4E-06 43.1 7.3 66 40-106 213-279 (299)
237 1wcv_1 SOJ, segregation protei 95.3 0.049 1.7E-06 41.2 6.8 66 39-106 110-182 (257)
238 3k9g_A PF-32 protein; ssgcid, 95.1 0.036 1.2E-06 42.1 5.7 63 40-104 144-208 (267)
239 3q9l_A Septum site-determining 95.1 0.018 6.1E-07 43.3 3.9 65 40-106 113-186 (260)
240 2oze_A ORF delta'; para, walke 94.9 0.044 1.5E-06 42.3 5.6 65 40-106 154-225 (298)
241 2rcn_A Probable GTPase ENGC; Y 94.8 0.045 1.5E-06 44.3 5.5 46 62-109 128-176 (358)
242 1zu4_A FTSY; GTPase, signal re 94.3 0.17 5.9E-06 40.0 8.0 64 40-106 191-267 (320)
243 3ea0_A ATPase, para family; al 94.1 0.047 1.6E-06 40.6 4.1 65 40-106 118-185 (245)
244 2ffh_A Protein (FFH); SRP54, s 94.0 0.14 4.9E-06 42.3 7.1 64 40-106 180-250 (425)
245 2xj4_A MIPZ; replication, cell 93.9 0.022 7.7E-07 44.0 1.9 34 40-75 103-136 (286)
246 3end_A Light-independent proto 93.1 0.046 1.6E-06 42.5 2.6 65 40-105 156-225 (307)
247 1puj_A YLQF, conserved hypothe 92.6 0.015 5.1E-07 45.3 -0.9 41 2-52 130-176 (282)
248 1byi_A Dethiobiotin synthase; 91.7 0.43 1.5E-05 34.8 6.3 66 40-105 108-179 (224)
249 1vma_A Cell division protein F 91.7 0.56 1.9E-05 36.9 7.2 64 40-106 186-262 (306)
250 1ls1_A Signal recognition part 91.7 0.49 1.7E-05 36.8 6.8 64 40-106 180-250 (295)
251 3szr_A Interferon-induced GTP- 91.5 0.28 9.7E-06 42.2 5.6 67 42-108 148-229 (608)
252 2hf9_A Probable hydrogenase ni 90.6 0.1 3.6E-06 38.1 1.9 60 42-108 120-179 (226)
253 3cnl_A YLQF, putative uncharac 89.9 0.023 8E-07 43.8 -2.3 42 2-53 109-156 (262)
254 3ug7_A Arsenical pump-driving 89.3 0.72 2.4E-05 36.7 6.0 42 65-106 237-279 (349)
255 3q5d_A Atlastin-1; G protein, 89.3 0.29 9.9E-06 40.7 3.7 48 37-86 136-190 (447)
256 1cp2_A CP2, nitrogenase iron p 87.2 0.37 1.2E-05 36.3 2.9 66 40-105 115-186 (269)
257 3ez9_A Para; DNA binding, wing 87.1 0.69 2.3E-05 37.3 4.6 34 40-75 247-280 (403)
258 2afh_E Nitrogenase iron protei 86.9 0.32 1.1E-05 37.2 2.4 66 40-105 118-189 (289)
259 2woj_A ATPase GET3; tail-ancho 86.6 1 3.6E-05 35.9 5.4 41 64-104 234-275 (354)
260 1tq4_A IIGP1, interferon-induc 85.9 1.1 3.7E-05 36.8 5.1 63 42-106 121-188 (413)
261 3zq6_A Putative arsenical pump 85.8 1.3 4.6E-05 34.6 5.5 41 66-106 223-264 (324)
262 3pg5_A Uncharacterized protein 85.2 0.9 3.1E-05 36.2 4.3 34 40-75 153-186 (361)
263 2px0_A Flagellar biosynthesis 84.6 0.92 3.1E-05 35.3 4.0 63 40-106 182-252 (296)
264 2yhs_A FTSY, cell division pro 83.8 4.1 0.00014 34.4 7.8 65 40-106 375-451 (503)
265 3e70_C DPA, signal recognition 83.6 1.9 6.7E-05 34.1 5.6 64 41-106 212-281 (328)
266 3iqw_A Tail-anchored protein t 78.6 8.8 0.0003 30.3 7.8 39 67-105 224-263 (334)
267 3ez2_A Plasmid partition prote 78.5 2.8 9.7E-05 33.5 5.0 34 40-75 244-277 (398)
268 3of5_A Dethiobiotin synthetase 78.0 3.4 0.00012 30.7 5.0 66 40-105 110-181 (228)
269 2woo_A ATPase GET3; tail-ancho 75.9 3.5 0.00012 32.3 4.7 40 66-105 222-262 (329)
270 1ihu_A Arsenical pump-driving 75.3 1.4 4.9E-05 37.3 2.5 43 64-106 489-532 (589)
271 1ihu_A Arsenical pump-driving 73.0 5.2 0.00018 33.8 5.4 40 67-106 200-240 (589)
272 1s2d_A Purine trans deoxyribos 71.3 12 0.00042 26.5 6.3 45 55-100 72-116 (167)
273 3io3_A DEHA2D07832P; chaperone 70.5 3.9 0.00013 32.5 3.8 40 66-105 232-272 (348)
274 1rj9_A FTSY, signal recognitio 66.7 21 0.00071 27.7 7.2 63 41-106 185-260 (304)
275 2khz_A C-MYC-responsive protei 66.5 19 0.00066 25.2 6.5 47 55-104 68-114 (165)
276 3fgn_A Dethiobiotin synthetase 66.2 11 0.00038 28.5 5.4 65 40-104 126-197 (251)
277 2f62_A Nucleoside 2-deoxyribos 66.1 12 0.00041 26.5 5.3 51 53-103 56-108 (161)
278 4fyk_A Deoxyribonucleoside 5'- 63.7 23 0.00078 24.9 6.3 45 54-101 58-102 (152)
279 3v7e_A Ribosome-associated pro 63.0 9.4 0.00032 23.7 3.8 50 56-106 17-66 (82)
280 3j21_Z 50S ribosomal protein L 62.9 21 0.00072 22.7 5.6 50 56-106 21-71 (99)
281 3qxc_A Dethiobiotin synthetase 61.9 16 0.00054 27.4 5.6 66 40-105 131-201 (242)
282 3ehd_A Uncharacterized conserv 60.7 18 0.00061 25.6 5.3 49 54-103 59-107 (162)
283 2xzm_U Ribosomal protein L7AE 58.9 15 0.00051 24.8 4.5 51 56-106 30-80 (126)
284 2ale_A SNU13, NHP2/L7AE family 58.2 12 0.00042 25.6 4.0 52 55-106 37-88 (134)
285 1eiw_A Hypothetical protein MT 57.1 5.8 0.0002 26.4 2.1 39 61-99 35-73 (111)
286 3hyn_A Putative signal transdu 56.6 28 0.00094 25.4 5.7 55 46-100 60-116 (189)
287 2lbw_A H/ACA ribonucleoprotein 56.0 12 0.0004 25.1 3.5 52 55-106 25-76 (121)
288 2aif_A Ribosomal protein L7A; 55.1 18 0.00061 24.7 4.4 51 56-106 47-97 (135)
289 3fkq_A NTRC-like two-domain pr 52.1 12 0.00039 29.7 3.5 34 40-75 259-292 (373)
290 1f8y_A Nucleoside 2-deoxyribos 51.5 18 0.00063 25.3 4.1 47 55-102 69-115 (157)
291 3v7q_A Probable ribosomal prot 48.7 13 0.00044 23.9 2.7 50 56-106 25-74 (101)
292 1bif_A 6-phosphofructo-2-kinas 45.7 31 0.0011 28.1 5.2 97 1-100 48-156 (469)
293 1xbi_A 50S ribosomal protein L 44.6 14 0.00049 24.6 2.5 52 55-106 34-85 (120)
294 1w41_A 50S ribosomal protein L 44.0 22 0.00077 22.7 3.3 49 56-105 22-71 (101)
295 3iz5_f 60S ribosomal protein L 42.9 24 0.00081 23.3 3.4 50 56-106 32-82 (112)
296 3on1_A BH2414 protein; structu 42.3 19 0.00066 23.0 2.8 50 56-106 24-73 (101)
297 1rlg_A 50S ribosomal protein L 42.0 15 0.00051 24.4 2.2 51 56-106 33-83 (119)
298 1vq8_F 50S ribosomal protein L 41.4 16 0.00054 24.3 2.3 51 56-106 35-85 (120)
299 2fc3_A 50S ribosomal protein L 40.6 18 0.0006 24.2 2.5 51 56-106 34-84 (124)
300 3imk_A Putative molybdenum car 40.2 95 0.0033 21.9 6.7 52 45-99 55-106 (158)
301 3jyw_G 60S ribosomal protein L 39.2 19 0.00064 24.0 2.3 52 55-106 30-81 (113)
302 3cpq_A 50S ribosomal protein L 39.2 21 0.00072 23.3 2.6 50 56-106 27-77 (110)
303 3h75_A Periplasmic sugar-bindi 37.9 91 0.0031 23.6 6.6 61 40-105 34-98 (350)
304 3o85_A Ribosomal protein L7AE; 37.2 19 0.00067 24.1 2.2 51 56-106 37-87 (122)
305 3izc_H 60S ribosomal protein R 34.1 30 0.001 26.5 3.0 52 55-106 136-187 (256)
306 3gv0_A Transcriptional regulat 32.9 90 0.0031 22.8 5.7 60 39-104 39-100 (288)
307 3abz_A Beta-glucosidase I; gly 32.5 1.3E+02 0.0045 26.8 7.4 48 55-102 564-623 (845)
308 3qk7_A Transcriptional regulat 30.4 1E+02 0.0036 22.6 5.7 58 40-103 40-98 (294)
309 2zkr_f 60S ribosomal protein L 30.2 34 0.0012 26.3 2.8 52 55-106 140-191 (266)
310 2x41_A Beta-glucosidase; hydro 30.0 1.5E+02 0.0052 25.8 7.2 46 56-101 436-498 (721)
311 2jnb_A NHP2-like protein 1; sp 29.6 15 0.00051 25.5 0.6 51 56-106 56-106 (144)
312 3b9q_A Chloroplast SRP recepto 29.2 1.5E+02 0.0053 22.5 6.6 63 42-106 185-259 (302)
313 4a1f_A DNAB helicase, replicat 28.9 2.1E+02 0.0071 22.4 7.6 59 42-100 129-203 (338)
314 2nx2_A Hypothetical protein YP 26.3 1.3E+02 0.0045 21.3 5.3 45 54-98 120-166 (181)
315 3zyz_A Beta-D-glucoside glucoh 26.2 1.3E+02 0.0045 26.2 6.1 47 55-101 418-481 (713)
316 2og2_A Putative signal recogni 25.5 2E+02 0.0067 22.7 6.7 63 42-106 242-316 (359)
317 3fwy_A Light-independent proto 24.7 26 0.00089 27.2 1.3 35 40-75 163-197 (314)
318 3hcw_A Maltose operon transcri 24.0 1.3E+02 0.0046 21.9 5.2 60 40-105 42-103 (295)
319 3u5e_c L32, RP73, YL38, 60S ri 23.0 31 0.0011 22.3 1.2 50 56-106 28-78 (105)
320 4a17_F RPL7A, 60S ribosomal pr 22.5 99 0.0034 23.6 4.1 52 55-106 129-180 (255)
321 3jy6_A Transcriptional regulat 21.7 2.3E+02 0.0077 20.3 6.8 58 40-104 37-96 (276)
322 3e61_A Putative transcriptiona 21.5 86 0.0029 22.6 3.6 57 40-104 38-97 (277)
323 2c92_A 6,7-dimethyl-8-ribityll 21.2 2.2E+02 0.0075 19.9 6.5 59 42-100 50-116 (160)
No 1
>3vqt_A RF-3, peptide chain release factor 3; translation, GTPase; HET: GDP; 1.80A {Desulfovibrio vulgaris} PDB: 3vr1_A*
Probab=99.88 E-value=7.4e-23 Score=175.41 Aligned_cols=97 Identities=30% Similarity=0.529 Sum_probs=78.8
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~ 85 (161)
.+++|+++.|++|||||.+...++.|+ +++|+|||||||.+|...+..+++.+|+||+|+|+.+|+..|++.+
T Consensus 72 ~~~~D~~~~EreRGITI~s~~~~~~~~-------~~~iNlIDTPGHvDF~~Ev~raL~~~DgAvlVvda~~GV~~qT~~v 144 (548)
T 3vqt_A 72 HATSDWMAMERERGISVTTSVMQFPYR-------DRVVNLLDTPGHQDFSEDTYRVLTAVDSALVVIDAAKGVEAQTRKL 144 (548)
T ss_dssp ----------------CTTTEEEEEET-------TEEEEEECCCCGGGCSHHHHHHHHSCSEEEEEEETTTBSCHHHHHH
T ss_pred ccccCChHHHHHCCCcEeeceEEEEEC-------CEEEEEEeCCCcHHHHHHHHHHHHhcCceEEEeecCCCcccccHHH
Confidence 478899999999999999999999998 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCcEEEEECCcchhhh
Q psy2609 86 LKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 86 ~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
|+++...++|.|+++||+|+...+
T Consensus 145 ~~~a~~~~lp~i~fINK~Dr~~ad 168 (548)
T 3vqt_A 145 MDVCRMRATPVMTFVNKMDREALH 168 (548)
T ss_dssp HHHHHHTTCCEEEEEECTTSCCCC
T ss_pred HHHHHHhCCceEEEEecccchhcc
Confidence 999999999999999999998766
No 2
>4fn5_A EF-G 1, elongation factor G 1; translation, translation-antibiotic compl; HET: 0UO; 2.90A {Pseudomonas aeruginosa}
Probab=99.88 E-value=1.6e-22 Score=177.76 Aligned_cols=107 Identities=33% Similarity=0.534 Sum_probs=80.4
Q ss_pred ccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHH
Q psy2609 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83 (161)
Q Consensus 4 g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~ 83 (161)
++++++|.++.|++||||+.++..++.|.......+++.|+|||||||.+|..++..+++.+|+||+|+|+.+|+..|++
T Consensus 48 ~~~~~~D~~~~E~eRGITI~s~~~s~~~~~~~~~~~~~~iNlIDTPGHvDF~~Ev~~aLr~~DgavlvVDaveGV~~qT~ 127 (709)
T 4fn5_A 48 DGAATTDWMVQEQERGITITSAAVTTFWKGSRGQYDNYRVNVIDTPGHVDFTIEVERSLRVLDGAVVVFCGTSGVEPQSE 127 (709)
T ss_dssp --------------------CCEEEEEECCTTSCSCCEEEEEECCCSCTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHH
T ss_pred CCCccCCChHHHHHcCCeEEeeeEEEEeccCcCCCCCEEEEEEeCCCCcccHHHHHHHHHHhCeEEEEEECCCCCchhHH
Confidence 45778999999999999999999999998544445579999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCcEEEEECCcchhhhh
Q psy2609 84 VALKQAWLEKIQPILVLNKIDRLILEM 110 (161)
Q Consensus 84 ~~~~~~~~~~~p~ilv~NK~Dl~~~~~ 110 (161)
.+|+++...++|.++|+||+|+...+.
T Consensus 128 ~v~~~a~~~~lp~i~~iNKiDr~~a~~ 154 (709)
T 4fn5_A 128 TVWRQANKYGVPRIVYVNKMDRQGANF 154 (709)
T ss_dssp HHHHHHHHHTCCEEEEEECSSSTTCCH
T ss_pred HHHHHHHHcCCCeEEEEccccccCccH
Confidence 999999999999999999999987663
No 3
>3j25_A Tetracycline resistance protein TETM; antibiotic resistance, translation; HET: GCP; 7.20A {Enterococcus faecalis}
Probab=99.85 E-value=1.6e-22 Score=175.96 Aligned_cols=98 Identities=31% Similarity=0.531 Sum_probs=93.4
Q ss_pred cccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH
Q psy2609 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV 84 (161)
Q Consensus 5 ~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~ 84 (161)
+++++|+++.|++||||+.+...++.|. +++|+|||||||.+|..++..+++.+|++|+|+|+.+|+..|++.
T Consensus 38 g~~~~D~~~~EreRGITI~s~~~~~~~~-------~~~iNlIDTPGH~DF~~Ev~raL~~~DgavlVVDa~~GV~~qT~~ 110 (638)
T 3j25_A 38 GTTRTDNTLLERQRGITIQTGITSFQWE-------NTKVNIIDTPGHMDFLAEVYRSLSVLDGAILLISAKDGVQAQTRI 110 (638)
T ss_dssp SCCSTTCSTTHHHHSSCSSCCCCCCBCS-------SCBCCCEECCCSSSTHHHHHHHHTTCSEEECCEESSCTTCSHHHH
T ss_pred CCcccCCcHHHHhCCCcEEeeeEEEEEC-------CEEEEEEECCCcHHHHHHHHHHHHHhCEEEEEEeCCCCCcHHHHH
Confidence 4678999999999999999999999998 789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 85 ALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 85 ~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+|+++...++|.|+++||+|+...+
T Consensus 111 v~~~a~~~~lp~i~~INKmDr~~a~ 135 (638)
T 3j25_A 111 LFHALRKMGIPTIFFINKIDQNGID 135 (638)
T ss_dssp HHHHHHHHTCSCEECCEECCSSSCC
T ss_pred HHHHHHHcCCCeEEEEeccccccCC
Confidence 9999999999999999999997655
No 4
>3j2k_7 ERF3, eukaryotic polypeptide chain release factor 3; rabbit 80S ribosome, ribosome-translation complex; 17.00A {Oryctolagus cuniculus}
Probab=99.77 E-value=1.2e-18 Score=145.58 Aligned_cols=94 Identities=20% Similarity=0.338 Sum_probs=83.3
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC-------
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC------- 79 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~------- 79 (161)
|++|.+++|+++|+|++.....+.+. +++++|||||||++|...+..+++.+|++|+|+|++++..
T Consensus 68 ~~~d~~~~er~~GiTid~~~~~~~~~-------~~~~~iiDTPGh~~f~~~~~~~~~~aD~~ilVVDa~~g~~e~~~~~~ 140 (439)
T 3j2k_7 68 WALDTNQEERDKGKTVEVGRAYFETE-------KKHFTILDAPGHKSFVPNMIGGASQADLAVLVISARKGEFETGFEKG 140 (439)
T ss_pred hhhccchhHhhcCceEEEeEEEEecC-------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCccccccCCC
Confidence 35678889999999999887777665 7799999999999999999999999999999999998875
Q ss_pred hhHHHHHHHHHHcCCC-cEEEEECCcchh
Q psy2609 80 AQTQVALKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
.++.+++..+...++| +|+|+||+|+..
T Consensus 141 ~qt~e~l~~~~~~~v~~iIvviNK~Dl~~ 169 (439)
T 3j2k_7 141 GQTREHAMLAKTAGVKHLIVLINKMDDPT 169 (439)
T ss_pred chHHHHHHHHHHcCCCeEEEEeecCCCcc
Confidence 6888888888888999 889999999964
No 5
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.76 E-value=3e-18 Score=153.12 Aligned_cols=129 Identities=51% Similarity=0.864 Sum_probs=96.8
Q ss_pred ccccccCCchhHHHcCCccccceEEEEeecC---------CCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeC
Q psy2609 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDN---------KDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74 (161)
Q Consensus 4 g~~~~~D~~~~E~~~giti~~~~~~~~~~~~---------~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~ 74 (161)
|.++++|..+.|+++|+|+.....++.|... ..+++.+.++|||||||.+|...+..+++.+|++|+|+|+
T Consensus 52 ~~~~~~D~~~~E~~rgiTI~~~~~~~~~~~~~~~~~~i~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~ailVvDa 131 (842)
T 1n0u_A 52 GEARFTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEVTAALRVTDGALVVVDT 131 (842)
T ss_dssp ---------------CCCBCCCEEEEEEECCHHHHHHCSSCCCSSEEEEEEECCCCCCSSCHHHHHHHHTCSEEEEEEET
T ss_pred CCceeecCchhhhhcceeEeeceeEEEecccccccccccccccCCCceEEEEECcCchhhHHHHHHHHHhCCEEEEEEeC
Confidence 4456778888899999999998888888610 0124578999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhhhcCChHHHHHhHHHHHHHHHhhh
Q psy2609 75 VEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVM 132 (161)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~~~~~~~~~~l~~~~~~~~~~~ 132 (161)
++++..++..+|..+...++|+++|+||+|+...+......+.+..+...++++...+
T Consensus 132 ~~g~~~qt~~~~~~~~~~~~p~ilviNK~D~~~~e~~~~~~e~~~~~~~~~~~i~~~l 189 (842)
T 1n0u_A 132 IEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLYQTFARTVESVNVIV 189 (842)
T ss_dssp TTBSCHHHHHHHHHHHHTTCEEEEEEECHHHHHHTSCCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHcCCCeEEEEECCCcchhhhccCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888889999999999999877766777887888877777665443
No 6
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane, nucleotide-binding, translation; 2.80A {Escherichia coli} PDB: 3deg_C*
Probab=99.75 E-value=3.8e-18 Score=147.46 Aligned_cols=101 Identities=44% Similarity=0.646 Sum_probs=74.4
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+++|.++.|+++|+|+......+.|... +++.+.++|||||||++|...+..+++.+|++|+|+|+++++..++...|
T Consensus 39 ~~~D~~~~ErerGiTi~~~~~~~~~~~~--~g~~~~l~liDTPGh~dF~~ev~~~l~~aD~aILVVDa~~gv~~qt~~~~ 116 (599)
T 3cb4_D 39 QVLDSMDLERERGITIKAQSVTLDYKAS--DGETYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAGQGVEAQTLANC 116 (599)
T ss_dssp ------------------CEEEEEEECT--TSCEEEEEEEECCCCGGGHHHHHHHHHHCSEEEEEEETTTCCCTHHHHHH
T ss_pred cccccchhhhcccceeeeeEEEEEEecC--CCCeEEEEEEECCCchHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHH
Confidence 3456677889999999999999988631 15568999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+...++|+|+|+||+|+...+
T Consensus 117 ~~~~~~~ipiIvViNKiDl~~a~ 139 (599)
T 3cb4_D 117 YTAMEMDLEVVPVLNKIDLPAAD 139 (599)
T ss_dssp HHHHHTTCEEEEEEECTTSTTCC
T ss_pred HHHHHCCCCEEEeeeccCccccc
Confidence 88888899999999999997643
No 7
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis, translation; HET: GDP; 2.11A {Coxiella burnetii}
Probab=99.75 E-value=2.7e-18 Score=146.61 Aligned_cols=93 Identities=31% Similarity=0.563 Sum_probs=84.7
Q ss_pred CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH
Q psy2609 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQA 89 (161)
Q Consensus 10 D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~ 89 (161)
|+++.|+++|+|+......+.|. +++++|||||||++|...+..+++.+|++|+|+|++.++..++..+|..+
T Consensus 58 d~~~~e~~~GiTi~~~~~~~~~~-------~~~i~liDTPG~~df~~~~~~~l~~aD~allVvDa~~g~~~~t~~~~~~~ 130 (528)
T 3tr5_A 58 DWMELEKQRGISVTTSVMQFPYK-------DYLINLLDTPGHADFTEDTYRTLTAVDSALMVIDAAKGVEPRTIKLMEVC 130 (528)
T ss_dssp HHHHHHHHHCCSSSSSEEEEEET-------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHHHHH
T ss_pred ccchhhhcCCeeEEEeEEEEEeC-------CEEEEEEECCCchhHHHHHHHHHHhCCEEEEEEeCCCCCCHHHHHHHHHH
Confidence 33456788999999999888887 78999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCcEEEEECCcchhhh
Q psy2609 90 WLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 90 ~~~~~p~ilv~NK~Dl~~~~ 109 (161)
...++|+++|+||+|+...+
T Consensus 131 ~~~~iPiivviNK~Dl~~~~ 150 (528)
T 3tr5_A 131 RLRHTPIMTFINKMDRDTRP 150 (528)
T ss_dssp HTTTCCEEEEEECTTSCCSC
T ss_pred HHcCCCEEEEEeCCCCcccc
Confidence 88899999999999997543
No 8
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus} PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Probab=99.75 E-value=3.3e-18 Score=147.81 Aligned_cols=101 Identities=40% Similarity=0.648 Sum_probs=77.1
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+++|.++.|+++|+|+......+.|... ++..+.++|||||||++|...+..+++.+|++|+|+|+++++..++...|
T Consensus 41 ~~~D~~~~ErerGITI~~~~~~~~~~~~--dg~~~~inliDTPGh~dF~~ev~r~l~~aD~aILVVDa~~gv~~qt~~~~ 118 (600)
T 2ywe_A 41 QLLDTLDVERERGITVKMQAVRMFYKAK--DGNTYKLHLIDTPGHVDFSYEVSRALAACEGALLLIDASQGIEAQTVANF 118 (600)
T ss_dssp ---------------CCCCSEEEEEECT--TSCEEEEEEECCCCSGGGHHHHHHHHHTCSEEEEEEETTTBCCHHHHHHH
T ss_pred cccccchhhhcccceeeeeEEEEEEEcC--CCCeEEEEEEECCCcHhHHHHHHHHHHhCCEEEEEEECCCCccHHHHHHH
Confidence 4556677899999999999888888631 14568999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+...++|+|+|+||+|+...+
T Consensus 119 ~~a~~~~ipiIvviNKiDl~~a~ 141 (600)
T 2ywe_A 119 WKAVEQDLVIIPVINKIDLPSAD 141 (600)
T ss_dssp HHHHHTTCEEEEEEECTTSTTCC
T ss_pred HHHHHCCCCEEEEEeccCccccC
Confidence 88888999999999999997643
No 9
>1wb1_A Translation elongation factor SELB; selenocysteine, protein synthesis, selenium, ribosome; HET: GDP DXC; 3.0A {Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Probab=99.75 E-value=3.2e-18 Score=144.64 Aligned_cols=100 Identities=30% Similarity=0.332 Sum_probs=76.3
Q ss_pred ccccccc------------cCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSY------------MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~------------~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~i 69 (161)
++|||++ +|.+++|+++|+|++.....+.+. ++++.|||||||++|...+..+++.+|++|
T Consensus 29 d~GKSTLi~~L~~~~~~~~~d~~~~e~~~GiTi~~~~~~~~~~-------~~~i~iiDtPGh~~~~~~~~~~~~~aD~~i 101 (482)
T 1wb1_A 29 DHGKTTLSKVLTEIASTSAHDKLPESQKRGITIDIGFSAFKLE-------NYRITLVDAPGHADLIRAVVSAADIIDLAL 101 (482)
T ss_dssp TSSHHHHHHHHHTTC--------------------CCCEEEET-------TEEEEECCCSSHHHHHHHHHHHTTSCCEEE
T ss_pred CChHHHHHHHHHCCCcccccccccccccCccEEecceEEEEEC-------CEEEEEEECCChHHHHHHHHHHHhhCCEEE
Confidence 5788877 455788999999999888877775 689999999999999999999999999999
Q ss_pred EEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 70 IVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 70 lVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|+++++..++.+++..+...++|+++|+||+|+...
T Consensus 102 lVvda~~g~~~qt~e~l~~~~~~~ip~IvviNK~Dl~~~ 140 (482)
T 1wb1_A 102 IVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSDNAGT 140 (482)
T ss_dssp EEEETTTCSCHHHHHHHHHHHHTTCCBCEEEECTTSSCH
T ss_pred EEEecCCCccHHHHHHHHHHHHcCCCEEEEEECCCcccc
Confidence 999999999999999998888889999999999999753
No 10
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation factor, protein synthesis, antibiotic, GTP-binding, nucleotide-binding; HET: GNP PUL; 1.4A {Thermus thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z* 2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A* 2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Probab=99.71 E-value=2.8e-17 Score=135.75 Aligned_cols=92 Identities=26% Similarity=0.435 Sum_probs=80.7
Q ss_pred cCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH
Q psy2609 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQ 88 (161)
Q Consensus 9 ~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~ 88 (161)
+|.+++|+++|+|++.....+.+. ..++.|||||||++|...+..+++.+|++|+|+|++++...++.+++..
T Consensus 50 ~d~~~~e~~~GiTi~~~~~~~~~~-------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~~~l~~ 122 (405)
T 2c78_A 50 IDKAPEERARGITINTAHVEYETA-------KRHYSHVDCPGHADYIKNMITGAAQMDGAILVVSAADGPMPQTREHILL 122 (405)
T ss_dssp HSCSHHHHHHTCCCSCEEEEEECS-------SCEEEEEECCCSGGGHHHHHHHHTTCSSEEEEEETTTCCCHHHHHHHHH
T ss_pred ccCCHHHHHcCCCEEeeeeEeccC-------CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEECCCCCcHHHHHHHHH
Confidence 466677889999998765555443 6799999999999999999999999999999999999999999999988
Q ss_pred HHHcCCC-cEEEEECCcchh
Q psy2609 89 AWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 89 ~~~~~~p-~ilv~NK~Dl~~ 107 (161)
+...++| +++|+||+|+..
T Consensus 123 ~~~~~ip~iivviNK~Dl~~ 142 (405)
T 2c78_A 123 ARQVGVPYIVVFMNKVDMVD 142 (405)
T ss_dssp HHHTTCCCEEEEEECGGGCC
T ss_pred HHHcCCCEEEEEEECccccC
Confidence 8888999 789999999974
No 11
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A* 1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Probab=99.71 E-value=2.9e-17 Score=135.84 Aligned_cols=108 Identities=24% Similarity=0.266 Sum_probs=84.2
Q ss_pred cccccccc--------CCchhHHHcCCccccceEEEEeecCC-----------C-CCC----ceeEEEEeCCCchhhHHH
Q psy2609 2 LCMVSSYM--------DSRKDEQERGITMKSSSISLYYKDNK-----------D-TPE----EYLINLIDSPGHVDFSSE 57 (161)
Q Consensus 2 ~~g~~~~~--------D~~~~E~~~giti~~~~~~~~~~~~~-----------~-~~~----~~~i~iiDTpG~~~~~~~ 57 (161)
++|||+++ |.+++|+++|+|++..+..+.+.... + .+. ..++.|||||||++|...
T Consensus 20 ~~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~ 99 (410)
T 1kk1_A 20 DHGKTTLTKALTGVWTDTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEALMTT 99 (410)
T ss_dssp TSSHHHHHHHHHTCCCC--CGGGGSCSSSCCEEEEEEEEECTTTCCEESSSBCTTTCCBCEEEEEEEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHhCCccccChhhhcCCcEEEEeeeeeecccccccccccccccccccCcccccccEEEEEECCChHHHHHH
Confidence 68898874 45568999999998876666553100 0 011 278999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-CcEEEEECCcchhhh
Q psy2609 58 VSTAVRLCDGTIIVVDCVEGI-CAQTQVALKQAWLEKI-QPILVLNKIDRLILE 109 (161)
Q Consensus 58 ~~~~l~~~d~~ilVvd~~~~~-~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~~~ 109 (161)
+..++..+|++|+|+|++++. ..++.+++..+...++ |+++|+||+|+...+
T Consensus 100 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~~~~~~iivviNK~Dl~~~~ 153 (410)
T 1kk1_A 100 MLAGASLMDGAILVIAANEPCPRPQTREHLMALQIIGQKNIIIAQNKIELVDKE 153 (410)
T ss_dssp HHHCGGGCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred HHhhhhhCCEEEEEEECCCCCCChhHHHHHHHHHHcCCCcEEEEEECccCCCHH
Confidence 999999999999999999987 7888888877766665 678999999997644
No 12
>1f60_A Elongation factor EEF1A; protein-protein complex, translation; 1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Probab=99.70 E-value=1.6e-17 Score=139.57 Aligned_cols=91 Identities=30% Similarity=0.426 Sum_probs=77.4
Q ss_pred CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCCh-------hH
Q psy2609 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICA-------QT 82 (161)
Q Consensus 10 D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~-------~~ 82 (161)
|.+++|+++|+|++.....+.+. .++++|||||||++|...+..+++.+|++|+|+|++++... ++
T Consensus 61 d~~~~er~~GiTi~~~~~~~~~~-------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvda~~g~~~~sf~~~~qt 133 (458)
T 1f60_A 61 DKLKAERERGITIDIALWKFETP-------KYQVTVIDAPGHRDFIKNMITGTSQADCAILIIAGGVGEFEAGISKDGQT 133 (458)
T ss_dssp HHHHHHHHTTCCCSCSCEEEECS-------SEEEEEEECCCCTTHHHHHHHSSSCCSEEEEEEECSHHHHHHHTCTTSHH
T ss_pred ccchhHHhcCcEEEEEEEEEecC-------CceEEEEECCCcHHHHHHHHhhhhhCCEEEEEEeCCcCccccccCcchhH
Confidence 44556788999999888766554 78999999999999999999999999999999999976544 77
Q ss_pred HHHHHHHHHcCCC-cEEEEECCcchh
Q psy2609 83 QVALKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 83 ~~~~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
.+++..+...++| +|+|+||+|+..
T Consensus 134 ~~~~~~~~~~~v~~iivviNK~Dl~~ 159 (458)
T 1f60_A 134 REHALLAFTLGVRQLIVAVNKMDSVK 159 (458)
T ss_dssp HHHHHHHHHTTCCEEEEEEECGGGGT
T ss_pred HHHHHHHHHcCCCeEEEEEEcccccc
Confidence 7777777777887 789999999973
No 13
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP, 50S subunit, cryo-EM, REAL-space refinement, ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Probab=99.70 E-value=1.4e-16 Score=140.00 Aligned_cols=103 Identities=37% Similarity=0.557 Sum_probs=89.7
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+++|+.+.|+++|+|+.....++.|......++.+.++|||||||.+|...+..+++.+|++|+|+|++.++..++..+|
T Consensus 48 ~~~D~~~~E~~rgiTi~~~~~~~~~~~~~~~~~~~~i~liDTPG~~df~~~~~~~l~~aD~aIlVvDa~~gv~~qt~~~~ 127 (704)
T 2rdo_7 48 ATMDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGAVMVYCAVGGVQPQSETVW 127 (704)
T ss_pred eeecChhhHHhcCceeeeceEEEEECCccccCCceeEEEEeCCCccchHHHHHHHHHHCCEEEEEEeCCCCCcHHHHHHH
Confidence 56677788999999999988888886311123458999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+.+...++|+++|+||+|+...+
T Consensus 128 ~~~~~~~ip~ilviNKiD~~~~~ 150 (704)
T 2rdo_7 128 RQANKYKVPRIAFVNKMDRMGAN 150 (704)
T ss_pred HHHHHcCCCEEEEEeCCCccccc
Confidence 98888899999999999997654
No 14
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine, structural genomics, NPPSFA; HET: CIT; 1.70A {Methanosarcina mazei}
Probab=99.69 E-value=4e-17 Score=133.85 Aligned_cols=93 Identities=13% Similarity=0.091 Sum_probs=84.6
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChh
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQ 81 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~ 81 (161)
++|||++++.+. ++|+|++.....+.+. +++++|||||||++|...+..+++.+|++|+|+| +.++..+
T Consensus 31 d~GKSTL~~~L~---~~giTi~~~~~~~~~~-------~~~i~iiDtPGh~~f~~~~~~~~~~aD~ailVvd-~~g~~~q 99 (370)
T 2elf_A 31 KSGRTSLAANLG---KKGTSSDITMYNNDKE-------GRNMVFVDAHSYPKTLKSLITALNISDIAVLCIP-PQGLDAH 99 (370)
T ss_dssp TSSHHHHHHTTS---EEEEESSSEEEEECSS-------SSEEEEEECTTTTTCHHHHHHHHHTCSEEEEEEC-TTCCCHH
T ss_pred CCCHHHHHHHHH---hCCEEEEeeEEEEecC-------CeEEEEEECCChHHHHHHHHHHHHHCCEEEEEEc-CCCCcHH
Confidence 789999999887 8899998877665554 6789999999999999999999999999999999 9999999
Q ss_pred HHHHHHHHHHcCCCc-EEEEE-CCcc
Q psy2609 82 TQVALKQAWLEKIQP-ILVLN-KIDR 105 (161)
Q Consensus 82 ~~~~~~~~~~~~~p~-ilv~N-K~Dl 105 (161)
+.+++..+...++|. |+++| |+|+
T Consensus 100 t~e~~~~~~~~~i~~~ivvvNNK~Dl 125 (370)
T 2elf_A 100 TGECIIALDLLGFKHGIIALTRSDST 125 (370)
T ss_dssp HHHHHHHHHHTTCCEEEEEECCGGGS
T ss_pred HHHHHHHHHHcCCCeEEEEEEeccCC
Confidence 999998888889999 89999 9999
No 15
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase, EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.69 E-value=7e-17 Score=133.55 Aligned_cols=108 Identities=25% Similarity=0.280 Sum_probs=77.9
Q ss_pred cccccccc--------CCchhHHHcCCccccceEEEEeecC---------C--C-CCC----ceeEEEEeCCCchhhHHH
Q psy2609 2 LCMVSSYM--------DSRKDEQERGITMKSSSISLYYKDN---------K--D-TPE----EYLINLIDSPGHVDFSSE 57 (161)
Q Consensus 2 ~~g~~~~~--------D~~~~E~~~giti~~~~~~~~~~~~---------~--~-~~~----~~~i~iiDTpG~~~~~~~ 57 (161)
++|||+++ |.+++|+++|+|++..+..+.+... . + .+. ...+.|||||||++|...
T Consensus 18 d~GKSTLi~~L~g~~~~~~~~e~~~giTi~~~~~~~~~~~~~~~~~y~~~~~~~~~g~~~~~~~~i~iiDtPGh~~f~~~ 97 (408)
T 1s0u_A 18 DHGKTSLTKALTGVWTDRHSEELRRGISIRLGYADCEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHETLMAT 97 (408)
T ss_dssp TSSHHHHHHHHHSCCCCC-------CCCCCCEEEEEEEEECTTTCCEESSSBCTTSCCBCEEEEEEEEEECSSHHHHHHH
T ss_pred CCCHHHHHHHHhCCccccCcccccCCcEEEecccccccccccccccccccccccccCcccccccEEEEEECCCHHHHHHH
Confidence 68888874 4567899999999877655443210 0 0 011 278999999999999999
Q ss_pred HHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-CcEEEEECCcchhhh
Q psy2609 58 VSTAVRLCDGTIIVVDCVEGI-CAQTQVALKQAWLEKI-QPILVLNKIDRLILE 109 (161)
Q Consensus 58 ~~~~l~~~d~~ilVvd~~~~~-~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~~~ 109 (161)
+..++..+|++|+|+|++++. ..++.+++..+...++ |+++|+||+|+...+
T Consensus 98 ~~~~~~~~D~~ilVvda~~g~~~~qt~e~l~~~~~l~~~~iivv~NK~Dl~~~~ 151 (408)
T 1s0u_A 98 MLSGASLMDGAILVIAANEPCPQPQTKEHLMALEILGIDKIIIVQNKIDLVDEK 151 (408)
T ss_dssp HHTTCSCCSEEEEEEETTSCSSCHHHHHHHHHHHHTTCCCEEEEEECTTSSCTT
T ss_pred HHHhHhhCCEEEEEEECCCCCCCchhHHHHHHHHHcCCCeEEEEEEccCCCCHH
Confidence 988889999999999999887 7888888777666665 688999999997644
No 16
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain, beta-barrel, translational GTPase, D structural genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Probab=99.68 E-value=3.7e-16 Score=131.86 Aligned_cols=94 Identities=28% Similarity=0.426 Sum_probs=72.6
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC-------CC
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG-------IC 79 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~-------~~ 79 (161)
+++|.+..|+++|+|++.....+.+. .+++.|||||||++|...+..+++.+|++|+|+|++++ +.
T Consensus 84 ~~~d~~~~e~~~GiTi~~~~~~~~~~-------~~~~~iiDTPG~~~f~~~~~~~~~~aD~~llVvDa~~g~~~~~~~~~ 156 (483)
T 3p26_A 84 WIMDQTNEERERGVTVSICTSHFSTH-------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLD 156 (483)
T ss_dssp -----------CCSSCCCCEEEEECS-------SCEEEEECCCCCGGGHHHHHHHHTTCSEEEEEEECCC------CCCC
T ss_pred hhhccchhHhhcCcceEeeeEEEecC-------CceEEEEECCCcHHHHHHHHHhhhhCCEEEEEEECCCCccccccchh
Confidence 44677788999999999887777655 78999999999999999999999999999999999987 55
Q ss_pred hhHHHHHHHHHHcCCC-cEEEEECCcchh
Q psy2609 80 AQTQVALKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
.++.+++..+...++| +|+|+||+|+..
T Consensus 157 ~qt~e~~~~~~~~~~~~iIvviNK~Dl~~ 185 (483)
T 3p26_A 157 GQTKEHMLLASSLGIHNLIIAMNKMDNVD 185 (483)
T ss_dssp HHHHHHHHHHHHTTCCCEEEEEECGGGGT
T ss_pred hhHHHHHHHHHHcCCCcEEEEEECcCccc
Confidence 7888888877777755 889999999975
No 17
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase; beta barrel, switch domain, heterodimer, pyrophosphate, G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV} SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Probab=99.68 E-value=1.8e-16 Score=132.15 Aligned_cols=92 Identities=28% Similarity=0.379 Sum_probs=75.2
Q ss_pred cCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH
Q psy2609 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQ 88 (161)
Q Consensus 9 ~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~ 88 (161)
+|.+++|+++|+|++.....+.+. ..++.|||||||++|...+..+++.+|++|+|+|++++...++.+++..
T Consensus 79 ~d~~~~E~~rGiTi~~~~~~~~~~-------~~~~~iiDtpGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~~qt~~~l~~ 151 (434)
T 1zun_B 79 VDGLQAEREQGITIDVAYRYFSTA-------KRKFIIADTPGHEQYTRNMATGASTCDLAIILVDARYGVQTQTRRHSYI 151 (434)
T ss_dssp HHHHHC-----CCCCCEEEEEECS-------SEEEEEEECCCSGGGHHHHHHHHTTCSEEEEEEETTTCSCHHHHHHHHH
T ss_pred hccChhHHHCCcEEEeeeeEeecC-------CceEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCCcHHHHHHHHH
Confidence 455667888999999766655544 7899999999999999999999999999999999999998999888887
Q ss_pred HHHcCCC-cEEEEECCcchh
Q psy2609 89 AWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 89 ~~~~~~p-~ilv~NK~Dl~~ 107 (161)
+...++| +|+|+||+|+..
T Consensus 152 ~~~~~~~~iIvviNK~Dl~~ 171 (434)
T 1zun_B 152 ASLLGIKHIVVAINKMDLNG 171 (434)
T ss_dssp HHHTTCCEEEEEEECTTTTT
T ss_pred HHHcCCCeEEEEEEcCcCCc
Confidence 7777875 789999999975
No 18
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET: GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W* 3zvo_Y* 3uoq_W*
Probab=99.68 E-value=1.6e-16 Score=135.66 Aligned_cols=96 Identities=29% Similarity=0.525 Sum_probs=74.9
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+++|+++.|+++|+|+......+.|. ++.++|||||||++|...+..+++.+|++|+|+|+++++..++..++
T Consensus 55 ~~~D~~~~E~~rGiTi~~~~~~~~~~-------~~~i~liDTPG~~df~~~~~~~l~~aD~~IlVvDa~~g~~~~t~~~~ 127 (529)
T 2h5e_A 55 AKSDWMEMEKQRGISITTSVMQFPYH-------DCLVNLLDTPGHEDFSEDTYRTLTAVDCCLMVIDAAKGVEDRTRKLM 127 (529)
T ss_dssp ---------------CCTTEEEEEET-------TEEEEEECCCCSTTCCHHHHHGGGGCSEEEEEEETTTCSCHHHHHHH
T ss_pred eeeccchhcccCCcceeeeEEEEEEC-------CeEEEEEECCCChhHHHHHHHHHHHCCEEEEEEeCCccchHHHHHHH
Confidence 44566777889999999988888887 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+...++|+++|+||+|+...+
T Consensus 128 ~~~~~~~ipiivviNK~Dl~~~~ 150 (529)
T 2h5e_A 128 EVTRLRDTPILTFMNKLDRDIRD 150 (529)
T ss_dssp HHHTTTTCCEEEEEECTTSCCSC
T ss_pred HHHHHcCCCEEEEEcCcCCcccc
Confidence 88888899999999999997643
No 19
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Probab=99.67 E-value=3.9e-17 Score=134.70 Aligned_cols=87 Identities=28% Similarity=0.396 Sum_probs=74.7
Q ss_pred hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC
Q psy2609 14 DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEK 93 (161)
Q Consensus 14 ~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~ 93 (161)
+|+++|+|++.....+.+. .+++.|||||||++|...+..+++.+|++|+|+|++++...++.+++..+...+
T Consensus 46 ~e~~~giTi~~~~~~~~~~-------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvda~~g~~~qt~e~l~~~~~~~ 118 (397)
T 1d2e_A 46 EERARGITINAAHVEYSTA-------ARHYAHTDCPGHADYVKNMITGTAPLDGCILVVAANDGPMPQTREHLLLARQIG 118 (397)
T ss_dssp EEEETTEEEECEEEEEECS-------SCEEEEEECSSHHHHHHHHHHTSSCCSEEEEEEETTTCSCHHHHHHHHHHHHTT
T ss_pred HHHhcCcEEEeeeEEeccC-------CeEEEEEECCChHHHHHHHHhhHhhCCEEEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 3457888988755444333 679999999999999999999999999999999999999999999998888889
Q ss_pred CC-cEEEEECCcchh
Q psy2609 94 IQ-PILVLNKIDRLI 107 (161)
Q Consensus 94 ~p-~ilv~NK~Dl~~ 107 (161)
+| +++|+||+|+..
T Consensus 119 vp~iivviNK~Dl~~ 133 (397)
T 1d2e_A 119 VEHVVVYVNKADAVQ 133 (397)
T ss_dssp CCCEEEEEECGGGCS
T ss_pred CCeEEEEEECcccCC
Confidence 99 579999999974
No 20
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit; translation termination, peptide release, GTPase, translatio; 2.35A {Schizosaccharomyces pombe} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Probab=99.67 E-value=1.1e-16 Score=134.62 Aligned_cols=94 Identities=23% Similarity=0.340 Sum_probs=54.8
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC-------C
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI-------C 79 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~-------~ 79 (161)
+++|.+++|+++|+|++.....+.+. ++++.|||||||++|...+..+++.+|++|+|+|++++. .
T Consensus 94 ~~~D~~~~er~~giTi~~~~~~~~~~-------~~~~~iiDtPGh~~f~~~~~~~~~~aD~~ilVvDa~~g~~e~sf~~~ 166 (467)
T 1r5b_A 94 WALDSTSEEREKGKTVEVGRAYFETE-------HRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFERG 166 (467)
T ss_dssp -------------------CCEEECS-------SEEEEECCCCC-----------TTSCSEEEEEEECSTTHHHHTTSTT
T ss_pred hhcccchhhhhcCceEEeeeEEEecC-------CeEEEEEECCCcHHHHHHHHhhcccCCEEEEEEeCCcCccccccCCC
Confidence 44567778899999999887766655 689999999999999999999999999999999999875 2
Q ss_pred hhHHHHHHHHHHcCCC-cEEEEECCcchh
Q psy2609 80 AQTQVALKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
.++.+++..+...++| +|+|+||+|+..
T Consensus 167 ~qt~e~l~~~~~~~vp~iivviNK~Dl~~ 195 (467)
T 1r5b_A 167 GQTREHAVLARTQGINHLVVVINKMDEPS 195 (467)
T ss_dssp CCHHHHHHHHHHTTCSSEEEEEECTTSTT
T ss_pred CcHHHHHHHHHHcCCCEEEEEEECccCCC
Confidence 5788888877788998 789999999964
No 21
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase, alpha/beta structure, protein biosynthesis, translation; HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Probab=99.66 E-value=8.6e-17 Score=134.13 Aligned_cols=93 Identities=31% Similarity=0.495 Sum_probs=69.8
Q ss_pred ccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC-------CCh
Q psy2609 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG-------ICA 80 (161)
Q Consensus 8 ~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~-------~~~ 80 (161)
++|.+++|+++|+|++.....+.+. .++++|||||||++|...+..+++.+|++|+|+|++++ +..
T Consensus 58 ~~D~~~~E~~~giTi~~~~~~~~~~-------~~~~~iiDtpG~~~f~~~~~~~~~~aD~~ilVvDa~~gsfe~~~~~~~ 130 (435)
T 1jny_A 58 LLDRLKEERERGVTINLTFMRFETK-------KYFFTIIDAPGHRDFVKNMITGASQADAAILVVSAKKGEYEAGMSVEG 130 (435)
T ss_dssp HHHHHHHC-----------CEEECS-------SCEEEECCCSSSTTHHHHHHHTSSCCSEEEEEEECSTTHHHHHHSTTC
T ss_pred hhccChHHHhcCceeEeeEEEEecC-------CeEEEEEECCCcHHHHHHHHhhhhhcCEEEEEEECCCCccccccccch
Confidence 3455667778999999877666555 78999999999999999999999999999999999988 667
Q ss_pred hHHHHHHHHHHcCCC-cEEEEECCcchh
Q psy2609 81 QTQVALKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 81 ~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
++.+++..+...++| +++|+||+|+..
T Consensus 131 qt~~~~~~~~~~~~~~iivviNK~Dl~~ 158 (435)
T 1jny_A 131 QTREHIILAKTMGLDQLIVAVNKMDLTE 158 (435)
T ss_dssp HHHHHHHHHHHTTCTTCEEEEECGGGSS
T ss_pred HHHHHHHHHHHcCCCeEEEEEEcccCCC
Confidence 888888877777875 789999999976
No 22
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A 2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A* 1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A* 3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Probab=99.65 E-value=9.2e-16 Score=134.58 Aligned_cols=96 Identities=38% Similarity=0.609 Sum_probs=73.5
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+++|+++.|+++|+|+.....++.|. .++++|||||||.+|...+..+++.+|++|+|+|++.+...++...|
T Consensus 50 ~~~d~~~~E~~~giTi~~~~~~~~~~-------~~~i~liDTPG~~df~~~~~~~l~~aD~~ilVvDa~~g~~~~t~~~~ 122 (691)
T 1dar_A 50 ATMDFMEQERERGITITAAVTTCFWK-------DHRINIIDTPGHVDFTIEVERSMRVLDGAIVVFDSSQGVEPQSETVW 122 (691)
T ss_dssp -----------------CCEEEEEET-------TEEEEEECCCSSTTCHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred eeccCchhhhhcccccccceEEEEEC-------CeEEEEEECcCccchHHHHHHHHHHCCEEEEEEECCCCcchhhHHHH
Confidence 44556666778999999988888887 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+...++|+++|+||+|+...+
T Consensus 123 ~~~~~~~~p~ivviNKiD~~~~~ 145 (691)
T 1dar_A 123 RQAEKYKVPRIAFANKMDKTGAD 145 (691)
T ss_dssp HHHHHTTCCEEEEEECTTSTTCC
T ss_pred HHHHHcCCCEEEEEECCCcccCC
Confidence 98888899999999999997643
No 23
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=99.64 E-value=4.6e-17 Score=130.01 Aligned_cols=100 Identities=20% Similarity=0.139 Sum_probs=77.4
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--------hHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--------FSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--------~~~~~~~~l~~~d~ 67 (161)
|||||++++.+..+. .++.|.+.....+.+ +..+++||||||+++ |...+..+++.+|+
T Consensus 17 nvGKSTLln~l~g~~~~ivs~~~~tTr~~i~~i~~~-------~~~~l~l~DTpG~~~~~~~l~~~~~~~~~~~l~~ad~ 89 (301)
T 1wf3_A 17 NVGKSTLLNNLLGVKVAPISPRPQTTRKRLRGILTE-------GRRQIVFVDTPGLHKPMDALGEFMDQEVYEALADVNA 89 (301)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE-------TTEEEEEEECCCCCCCCSHHHHHHHHHHHHHTSSCSE
T ss_pred CCCHHHHHHHHhCCceeeecCCCCceeEEEEEEEEe-------CCcEEEEecCccccchhhHHHHHHHHHHHHHHhcCCE
Confidence 799999987776443 234444432222222 278999999999876 67788899999999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
+++|+|++++....+..++..+... ++|+++|+||+|+...
T Consensus 90 il~VvD~~~~~~~~~~~i~~~l~~~~~~~p~ilV~NK~Dl~~~ 132 (301)
T 1wf3_A 90 VVWVVDLRHPPTPEDELVARALKPLVGKVPILLVGNKLDAAKY 132 (301)
T ss_dssp EEEEEETTSCCCHHHHHHHHHHGGGTTTSCEEEEEECGGGCSS
T ss_pred EEEEEECCCCCChHHHHHHHHHHhhcCCCCEEEEEECcccCCc
Confidence 9999999988887777777777666 8999999999999754
No 24
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein; 1.90A {Staphylococcus aureus}
Probab=99.63 E-value=1.3e-15 Score=133.57 Aligned_cols=96 Identities=38% Similarity=0.592 Sum_probs=74.2
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
+++|+.+.|+++|+|+......+.|. +++++|||||||.+|...+..+++.+|++|+|+|++.+...++...|
T Consensus 48 ~~~D~~~~e~~~giTi~~~~~~~~~~-------~~~i~liDTPG~~df~~~~~~~l~~aD~~llVvDa~~g~~~~~~~~~ 120 (693)
T 2xex_A 48 SQMDWMEQEQDRGITITSAATTAAWE-------GHRVNIIDTPGHVDFTVEVERSLRVLDGAVTVLDAQSGVEPQTETVW 120 (693)
T ss_dssp ----------------CCSEEEEEET-------TEEEEEECCCCCSSCCHHHHHHHHHCSEEEEEEETTTBSCHHHHHHH
T ss_pred eecccchhhhhcCceEeeeeEEEEEC-------CeeEEEEECcCCcchHHHHHHHHHHCCEEEEEECCCCCCcHHHHHHH
Confidence 34556667778999999988888887 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcchhhh
Q psy2609 87 KQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..+...++|+++|+||+|+...+
T Consensus 121 ~~~~~~~~p~ilviNK~Dl~~~~ 143 (693)
T 2xex_A 121 RQATTYGVPRIVFVNKMDKLGAN 143 (693)
T ss_dssp HHHHHTTCCEEEEEECTTSTTCC
T ss_pred HHHHHcCCCEEEEEECCCccccc
Confidence 98888899999999999997643
No 25
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=99.62 E-value=2.2e-16 Score=126.19 Aligned_cols=99 Identities=19% Similarity=0.216 Sum_probs=76.4
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh----------hHHHHHHHHHhc
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD----------FSSEVSTAVRLC 65 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~----------~~~~~~~~l~~~ 65 (161)
|||||++++.+..+. .++.|.......+.+ +..++++||||||+.+ +...+..+++.+
T Consensus 20 nvGKSTLin~l~g~~~~i~s~~~~tT~~~~~~~~~~------~~~~~i~lvDTPG~~~~~~~~~l~~~~~~~~~~~l~~a 93 (308)
T 3iev_A 20 NVGKSTLLNNLLGTKVSIISPKAGTTRMRVLGVKNI------PNEAQIIFLDTPGIYEPKKSDVLGHSMVEIAKQSLEEA 93 (308)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCCSCEEEEEEE------TTTEEEEEEECCCCCCCCTTCHHHHHHHHHHHHHHHHC
T ss_pred CCcHHHHHHHHhCCCccccCCCCCceeeEEEEEEec------CCCCeEEEEECcCCCccccchhHHHHHHHHHHHHhhcC
Confidence 799999998775443 334554433222222 2278999999999843 557789999999
Q ss_pred CEEEEEEeCCCCCChhHHHH-HHHHHHcCCCcEEEEECCcch
Q psy2609 66 DGTIIVVDCVEGICAQTQVA-LKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~-~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
|++++|+|++++....+... +..+...++|+++|+||+|+.
T Consensus 94 D~il~VvD~~~~~~~~~~~~~~~~l~~~~~pvilV~NK~Dl~ 135 (308)
T 3iev_A 94 DVILFMIDATEGWRPRDEEIYQNFIKPLNKPVIVVINKIDKI 135 (308)
T ss_dssp SEEEEEEETTTBSCHHHHHHHHHHTGGGCCCEEEEEECGGGS
T ss_pred CEEEEEEeCCCCCCchhHHHHHHHHHhcCCCEEEEEECccCC
Confidence 99999999998888888777 677777789999999999997
No 26
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein complex, translation regulation; 2.74A {Schizosaccharomyces pombe}
Probab=99.60 E-value=1.2e-17 Score=144.20 Aligned_cols=95 Identities=25% Similarity=0.351 Sum_probs=50.5
Q ss_pred ccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC-------
Q psy2609 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI------- 78 (161)
Q Consensus 6 ~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~------- 78 (161)
++++|.+++|+++|+|++.....+.+. +++++|||||||++|...+..+++.+|++|+|+|++.+.
T Consensus 227 ~~~~D~~~~E~~~GiTid~~~~~~~~~-------~~~i~iiDTPGh~~f~~~~~~~~~~aD~alLVVDa~~g~~e~gi~~ 299 (592)
T 3mca_A 227 AWLLDTTEEERARGVTMDVASTTFESD-------KKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299 (592)
T ss_dssp ---------------------------------------CCEEESSSEEEEECCC-------CCSEEEEEECCSSTTSCS
T ss_pred hhhhccchhhhcCCeeEEeeEEEEEeC-------CeEEEEEECCChHHHHHHHHHHHhhCCEEEEEEECCCCcccccccc
Confidence 346677888999999999887777665 679999999999999999999999999999999999754
Q ss_pred ChhHHHHHHHHHHcCCC-cEEEEECCcchh
Q psy2609 79 CAQTQVALKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 79 ~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
..++.+++..+...++| +|+|+||+|+..
T Consensus 300 ~~qt~e~l~~~~~lgip~iIvviNKiDl~~ 329 (592)
T 3mca_A 300 NGQTREHAYLLRALGISEIVVSVNKLDLMS 329 (592)
T ss_dssp CSSHHHHHHHHHHSSCCCEEEEEECGGGGT
T ss_pred chHHHHHHHHHHHcCCCeEEEEEecccccc
Confidence 78899998888888998 788999999975
No 27
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation of protein synthesis, cryo-eletron microscopy, translation/RNA complex; 13.80A {Escherichia coli}
Probab=99.60 E-value=4.7e-17 Score=138.04 Aligned_cols=100 Identities=23% Similarity=0.340 Sum_probs=85.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+|+|++.....+.+. +.+++|||||||++|...+..+++.+|++++|+|+++
T Consensus 14 d~GKTTLl~~L~~~~v~~~e~~GIT~~i~~~~v~~~-------~~~i~~iDTPGhe~f~~~~~~~~~~aD~aILVVda~~ 86 (501)
T 1zo1_I 14 DHGKTSLLEYIRSTKVASGEAGGITQHIGAYHVETE-------NGMITFLDTPGHAAFTSMRARGAQATDIVVLVVAADD 86 (501)
T ss_dssp TSSSHHHHHHHHHHHHSBTTBCCCCCCSSCCCCCTT-------SSCCCEECCCTTTCCTTSBCSSSBSCSSEEEEEETTT
T ss_pred CCCHHHHHHHHHcCCCccccCCCeeEeEEEEEEEEC-------CEEEEEEECCCcHHHHHHHHHHHhhCCEEEEEeeccc
Confidence 689999998886432 3678887766555444 5689999999999999998889999999999999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+..+++.+++..+...++|+|+|+||+|+...
T Consensus 87 g~~~qT~e~l~~~~~~~vPiIVviNKiDl~~~ 118 (501)
T 1zo1_I 87 GVMPQTIEAIQHAKAAQVPVVVAVNKIDKPEA 118 (501)
T ss_dssp BSCTTTHHHHHHHHHTTCCEEEEEECSSSSTT
T ss_pred CccHHHHHHHHHHHhcCceEEEEEEecccccc
Confidence 99999999998888889999999999999754
No 28
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.59 E-value=2.9e-15 Score=124.93 Aligned_cols=99 Identities=22% Similarity=0.253 Sum_probs=78.4
Q ss_pred ccccccccCCchh------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh---------hHHHHHHHHHhcC
Q psy2609 2 LCMVSSYMDSRKD------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD---------FSSEVSTAVRLCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~---------~~~~~~~~l~~~d 66 (161)
|+|||++++++.. +..+|+|++.....+.|. +.++.+|||||++. +..++..+++.+|
T Consensus 11 nvGKStL~nrl~~~~~~~v~~~~g~T~d~~~~~~~~~-------~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~~ad 83 (439)
T 1mky_A 11 NVGKSTLFNKLVKKKKAIVEDEEGVTRDPVQDTVEWY-------GKTFKLVDTCGVFDNPQDIISQKMKEVTLNMIREAD 83 (439)
T ss_dssp TSSHHHHHHHHHC--------------CCSEEEEEET-------TEEEEEEECTTTTSSGGGCCCHHHHHHHHHHHTTCS
T ss_pred CCCHHHHHHHHhCCCCceecCCCCCccceeeEEEEEC-------CeEEEEEECCCccccccchHHHHHHHHHHHHHHhCC
Confidence 7999999877753 446789999888888887 66899999999763 5677889999999
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++++|+|++.+.+..+..+..++...++|+++|+||+|+..
T Consensus 84 ~il~V~D~~~~~~~~d~~i~~~l~~~~~p~ilv~NK~D~~~ 124 (439)
T 1mky_A 84 LVLFVVDGKRGITKEDESLADFLRKSTVDTILVANKAENLR 124 (439)
T ss_dssp EEEEEEETTTCCCHHHHHHHHHHHHHTCCEEEEEESCCSHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEeCCCCcc
Confidence 99999999998888887777777778999999999999864
No 29
>4dkx_A RAS-related protein RAB-6A; GTP binding fold, membrane trafficking, GTP, cytosol, protei transport; HET: GDP; 1.90A {Homo sapiens} PDB: 3bbp_A*
Probab=99.58 E-value=6.9e-16 Score=117.73 Aligned_cols=102 Identities=20% Similarity=0.165 Sum_probs=69.2
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||.++ +.+..+..+++..+.....+... +..+++.||||||+++|...+..+++.++++++|+|.+.
T Consensus 23 ~VGKTsLi~r~~~~~f~~~~~~Tig~d~~~k~~~~~-----~~~v~l~iwDtaGqe~~~~l~~~~~~~a~~~ilv~di~~ 97 (216)
T 4dkx_A 23 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-----DRTIRLQLWDTAGLERFRSLIPSYIRDSAAAVVVYDITN 97 (216)
T ss_dssp TSSHHHHHHHHHHSCCC----------CEEEEEECS-----SCEEEEEEECCSCTTTCGGGHHHHHTTCSEEEEEEETTC
T ss_pred CcCHHHHHHHHHhCCCCCCcCCccceEEEEEEEEec-----ceEEEEEEEECCCchhhhhHHHHHhccccEEEEEeecch
Confidence 57899886 55667777777766555555554 568899999999999999999999999999999999985
Q ss_pred CCChhHH-HHHHHH---HHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQA---WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~---~~~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+ ...++|++||+||+|+...
T Consensus 98 ~~Sf~~i~~~~~~i~~~~~~~~piilVgNK~Dl~~~ 133 (216)
T 4dkx_A 98 VNSFQQTTKWIDDVRTERGSDVIIMLVGNKTDLADK 133 (216)
T ss_dssp HHHHHTHHHHHHHHHHHHTTSSEEEEEEECTTCGGG
T ss_pred hHHHHHHHHHHHHHHHhcCCCCeEEEEeeccchHhc
Confidence 4332222 222222 2357899999999999753
No 30
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.7e-15 Score=131.23 Aligned_cols=92 Identities=28% Similarity=0.450 Sum_probs=78.9
Q ss_pred cCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC-------CChh
Q psy2609 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG-------ICAQ 81 (161)
Q Consensus 9 ~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~-------~~~~ 81 (161)
+|.++.|+++|+|++.....+.+. .++++|||||||++|...+..+++.+|++|+|+|++.+ +..+
T Consensus 220 ~d~~~~e~~~GiTid~~~~~~~~~-------~~~~~iiDTPG~e~f~~~~~~~~~~aD~~llVVDa~~g~~e~~~~~~~q 292 (611)
T 3izq_1 220 MDQTNEERERGVTVSICTSHFSTH-------RANFTIVDAPGHRDFVPNAIMGISQADMAILCVDCSTNAFESGFDLDGQ 292 (611)
T ss_dssp HHHHHHHHHTTTCCSCSCCEEECS-------SCEEEEEECCSSSCHHHHHTTTSSCCSEEEEEEECSHHHHHTTCCTTSH
T ss_pred eccchhhhhCCeeEeeeeEEEecC-------CceEEEEECCCCcccHHHHHHHHhhcCceEEEEECCCCcccccchhhhH
Confidence 345567889999999888877765 78999999999999999999999999999999999875 3567
Q ss_pred HHHHHHHHHHcCCC-cEEEEECCcchh
Q psy2609 82 TQVALKQAWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 82 ~~~~~~~~~~~~~p-~ilv~NK~Dl~~ 107 (161)
+.+++..+...++| +|+|+||+|+..
T Consensus 293 t~e~l~~~~~lgi~~iIVVvNKiDl~~ 319 (611)
T 3izq_1 293 TKEHMLLASSLGIHNLIIAMNKMDNVD 319 (611)
T ss_dssp HHHHHHHHHTTTCCEEEEEEECTTTTT
T ss_pred HHHHHHHHHHcCCCeEEEEEecccccc
Confidence 88887777777776 889999999975
No 31
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=99.57 E-value=5.5e-15 Score=105.25 Aligned_cols=100 Identities=16% Similarity=0.054 Sum_probs=73.3
Q ss_pred ccccccccCCch------hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEE
Q psy2609 2 LCMVSSYMDSRK------DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~------~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~ 68 (161)
++|||++++.+. .+..++.+.+.....+.+. +..+.+|||||+.+ +...+..+++.+|++
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (161)
T 2dyk_A 11 NVGKSSLFNRLLKKRSAVVADVPGVTRDLKEGVVETD-------RGRFLLVDTGGLWSGDKWEKKIQEKVDRALEDAEVV 83 (161)
T ss_dssp TSSHHHHHHHHHHCCC-----------CCEEEEEEET-------TEEEEEEECGGGCSSSSCCHHHHHHHHHHTTTCSEE
T ss_pred CCCHHHHHHHHhCCCeeeccCCCCceecceEEEEEeC-------CceEEEEECCCCCCccchHHHHHHHHHHHHHhCCEE
Confidence 689999986653 2334566665554555554 56899999999987 566778889999999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++|+|++.+.......+...+...++|+++|+||+|+...
T Consensus 84 i~v~d~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (161)
T 2dyk_A 84 LFAVDGRAELTQADYEVAEYLRRKGKPVILVATKVDDPKH 123 (161)
T ss_dssp EEEEESSSCCCHHHHHHHHHHHHHTCCEEEEEECCCSGGG
T ss_pred EEEEECCCcccHhHHHHHHHHHhcCCCEEEEEECcccccc
Confidence 9999999887776666777777779999999999999754
No 32
>3sjy_A Translation initiation factor 2 subunit gamma; zinc finger, initiate translation, tRNA binding, mRNA bindin binding; HET: GCP GDP; 2.00A {Sulfolobus solfataricus P2} PDB: 3pen_A* 3sjz_A* 2qn6_A* 2aho_A 2qmu_A* 2plf_A* 3v11_A* 3i1f_A* 3cw2_A 2pmd_A* 3p3m_A* 3qsy_A*
Probab=99.56 E-value=1.2e-15 Score=125.87 Aligned_cols=69 Identities=30% Similarity=0.390 Sum_probs=61.6
Q ss_pred eeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC-ChhHHHHHHHHHHcCC-CcEEEEECCcchhhh
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI-CAQTQVALKQAWLEKI-QPILVLNKIDRLILE 109 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~-~~~~~~~~~~~~~~~~-p~ilv~NK~Dl~~~~ 109 (161)
..+.|||||||++|...+..+++.+|++++|+|++++. ..++.+++..+...+. |+++|+||+|+...+
T Consensus 75 ~~~~iiDtPGh~~~~~~~~~~~~~~D~~ilVvda~~~~~~~qt~~~~~~~~~~~~~~iivviNK~Dl~~~~ 145 (403)
T 3sjy_A 75 RRISFIDAPGHEVLMATMLSGAALMDGAILVVAANEPFPQPQTREHFVALGIIGVKNLIIVQNKVDVVSKE 145 (403)
T ss_dssp EEEEEEECCCCGGGHHHHHHHHTTCSEEEEEEETTSCSSCHHHHHHHHHHHHHTCCCEEEEEECGGGSCHH
T ss_pred ceEEEEECCCcHHHHHHHHHHHhhCCEEEEEEECCCCCCcHHHHHHHHHHHHcCCCCEEEEEECccccchH
Confidence 78999999999999999999999999999999999987 7888888877776665 789999999997654
No 33
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA polymerase, translation, transferase-RNA complex; HET: GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A* 3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G* 1efu_B
Probab=99.56 E-value=4.6e-15 Score=135.26 Aligned_cols=92 Identities=28% Similarity=0.417 Sum_probs=69.4
Q ss_pred cCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHH
Q psy2609 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQ 88 (161)
Q Consensus 9 ~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~ 88 (161)
+|.+++|+++|+|++.....+... .++++|||||||++|...+..+++.+|++|+|+|++++...++.+++..
T Consensus 334 lD~~~~ErerGITIdva~v~f~~~-------~~kI~IIDTPGHedF~~~mi~gas~AD~aILVVDAtdGv~~QTrEhL~l 406 (1289)
T 3avx_A 334 IDNAPEEKARGITINTSHVEYDTP-------TRHYAHVDCPGHADYVKNMITGAAQMDGAILVVAATDGPMPQTREHILL 406 (1289)
T ss_dssp --------------CCSCEEEECS-------SCEEEEEECCCHHHHHHHHHHTSCCCSEEEEEEETTTCSCTTHHHHHHH
T ss_pred cccccccccCceeEEEEEEEEcCC-------CEEEEEEECCChHHHHHHHHHHHhhCCEEEEEEcCCccCcHHHHHHHHH
Confidence 455667889999999876655443 7899999999999999999999999999999999999999999999888
Q ss_pred HHHcCCC-cEEEEECCcchh
Q psy2609 89 AWLEKIQ-PILVLNKIDRLI 107 (161)
Q Consensus 89 ~~~~~~p-~ilv~NK~Dl~~ 107 (161)
+...++| +|+|+||+|+..
T Consensus 407 l~~lgIP~IIVVINKiDLv~ 426 (1289)
T 3avx_A 407 GRQVGVPYIIVFLNKCDMVD 426 (1289)
T ss_dssp HHHHTCSCEEEEEECCTTCC
T ss_pred HHHcCCCeEEEEEeeccccc
Confidence 8888999 589999999974
No 34
>2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A*
Probab=99.56 E-value=5.6e-14 Score=122.80 Aligned_cols=93 Identities=22% Similarity=0.334 Sum_probs=85.1
Q ss_pred cccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH
Q psy2609 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 7 ~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
++.|..+.|+++|+|+......+.+. .+.++|||||||++|...+..+++.+|++++|+|++.++..++..++
T Consensus 47 ~~~d~~~~e~~~giti~~~~~~~~~~-------~~~~nliDTpG~~~f~~~~~~~l~~ad~~ilVvD~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 47 TTTDYTPEAKLHRTTVRTGVAPLLFR-------GHRVFLLDAPGYGDFVGEIRGALEAADAALVAVSAEAGVQVGTERAW 119 (665)
T ss_dssp CSSCCSHHHHHTTSCCSCEEEEEEET-------TEEEEEEECCCSGGGHHHHHHHHHHCSEEEEEEETTTCSCHHHHHHH
T ss_pred ccccCCHHHHhcCCeEEecceEEeeC-------CEEEEEEeCCCccchHHHHHHHHhhcCcEEEEEcCCcccchhHHHHH
Confidence 45577778889999998887777776 78999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCcEEEEECCcch
Q psy2609 87 KQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 87 ~~~~~~~~p~ilv~NK~Dl~ 106 (161)
+.+...++|+++|+||+|+.
T Consensus 120 ~~~~~~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 120 TVAERLGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHHHTTCCEEEEEECGGGC
T ss_pred HHHHHccCCEEEEecCCchh
Confidence 99888899999999999987
No 35
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=99.56 E-value=6.1e-16 Score=112.12 Aligned_cols=99 Identities=23% Similarity=0.369 Sum_probs=79.4
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. ...++++.+.....+.+. +..+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 18 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (178)
T 2lkc_A 18 DHGKTTLLDAIRHSKVTEQEAGGITQHIGAYQVTVN-------DKKITFLDTPGHEAFTTMRARGAQVTDIVILVVAADD 90 (178)
T ss_dssp TTTHHHHHHHHHTTCSSCSSCCSSSTTCCCCEEEET-------TEEEEESCCCSSSSSSCSCCSSCCCCCEEEEEEETTC
T ss_pred CCCHHHHHHHHhCCccccCCCCceeEeeeEEEEEeC-------CceEEEEECCCCHHHHHHHHHHHhhCCEEEEEEECCC
Confidence 6899999865532 334556666655556555 5789999999999988888888899999999999998
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
+........+..+...++|+++|+||+|+..
T Consensus 91 ~~~~~~~~~l~~~~~~~~p~ilv~nK~Dl~~ 121 (178)
T 2lkc_A 91 GVMPQTVEAINHAKAANVPIIVAINKMDKPE 121 (178)
T ss_dssp CCCHHHHHHHHHHGGGSCCEEEEEETTTSSC
T ss_pred CCcHHHHHHHHHHHhCCCCEEEEEECccCCc
Confidence 7777777777777777999999999999975
No 36
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=99.55 E-value=1.5e-14 Score=107.37 Aligned_cols=103 Identities=14% Similarity=0.054 Sum_probs=71.9
Q ss_pred cccccccc----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHH---HHHHHhcCEEEEEEeC
Q psy2609 2 LCMVSSYM----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEV---STAVRLCDGTIIVVDC 74 (161)
Q Consensus 2 ~~g~~~~~----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~---~~~l~~~d~~ilVvd~ 74 (161)
++|||+++ +.+..+...+.........+.+.. +..+++.+|||||+++|.... ..+++.+|++|+|+|+
T Consensus 30 ~vGKTsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~i~v~d~ 105 (196)
T 3llu_A 30 RSGKSSIQKVVFHKMSPNETLFLESTNKIYKDDISN----SSFVNFQIWDFPGQMDFFDPTFDYEMIFRGTGALIYVIDA 105 (196)
T ss_dssp TSSHHHHHHHHHSCCCGGGGGGCCCCCSCEEEEECC----TTSCCEEEEECCSSCCTTCTTCCHHHHHHTCSEEEEEEET
T ss_pred CCCHHHHHHHHHhcCCCcceeeeccccceeeeeccC----CCeeEEEEEECCCCHHHHhhhhhcccccccCCEEEEEEEC
Confidence 68999994 455444444444444444443331 447899999999999988777 8999999999999999
Q ss_pred CCCCChhHHHHHHHHHH-----cCCCcEEEEECCcchhh
Q psy2609 75 VEGICAQTQVALKQAWL-----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 75 ~~~~~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~~~ 108 (161)
++........+..++.. .++|+++|+||+|+...
T Consensus 106 ~~~~~~~~~~~~~~l~~~~~~~~~~piilv~nK~Dl~~~ 144 (196)
T 3llu_A 106 QDDYMEALTRLHITVSKAYKVNPDMNFEVFIHKVDGLSD 144 (196)
T ss_dssp TSCCHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSCH
T ss_pred CCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeccccCch
Confidence 97632222333333322 38899999999998754
No 37
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=99.55 E-value=1e-14 Score=107.85 Aligned_cols=102 Identities=19% Similarity=0.137 Sum_probs=72.1
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..+.++.+.....+.+. +..+++.+|||||++++...+..+++.+|++|+|+|+++
T Consensus 36 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV~D~~~ 110 (192)
T 2il1_A 36 GVGKTSLMERFTDDTFCEACKSTVGVDFKIKTVELR-----GKKIRLQIWDTAGQERFNSITSAYYRSAKGIILVYDITK 110 (192)
T ss_dssp TSSHHHHHHHHCC--------CCTTEEEEEEEEEET-----TEEEEEEEEEECCSGGGHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCcCCCCccceeEEEEEEEEC-----CeEEEEEEEeCCCcHHHHHHHHHHhcCCCEEEEEEECcC
Confidence 689999975553 3445555555444555554 446899999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+..... ++..+.. .++|+++|+||+|+...
T Consensus 111 ~~s~~~~~~~~~~i~~~~~~~~piilV~NK~Dl~~~ 146 (192)
T 2il1_A 111 KETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETD 146 (192)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 54333222 2222222 47899999999999653
No 38
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=99.55 E-value=1.4e-15 Score=110.04 Aligned_cols=100 Identities=18% Similarity=0.059 Sum_probs=69.3
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.......+.+. +..+.+.+|||||++++...+..+++.+|++++|+|++.
T Consensus 17 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 91 (177)
T 1wms_A 17 GVGKSSLMNRYVTNKFDTQLFHTIGVEFLNKDLEVD-----GHFVTMQIWDTAGQERFRSLRTPFYRGSDCCLLTFSVDD 91 (177)
T ss_dssp TSSHHHHHHHHHHSCCCC----CCSEEEEEEEEEET-----TEEEEEEEEECCCCGGGHHHHGGGGTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeeEEEEEEEEC-----CEEEEEEEEeCCCchhhhhhHHHHHhcCCEEEEEEECcC
Confidence 689999986653 3445555554434444444 446799999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHH---H----cCCCcEEEEECCcch
Q psy2609 77 GICAQTQV-ALKQAW---L----EKIQPILVLNKIDRL 106 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~---~----~~~p~ilv~NK~Dl~ 106 (161)
..+..... ++..+. . .++|+++|+||+|+.
T Consensus 92 ~~s~~~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~ 129 (177)
T 1wms_A 92 SQSFQNLSNWKKEFIYYADVKEPESFPFVILGNKIDIS 129 (177)
T ss_dssp HHHHHTHHHHHHHHHHHHTCSCTTTSCEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHHHHHccccccCCCcEEEEEECCccc
Confidence 43322211 122221 1 578999999999996
No 39
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=99.54 E-value=6e-15 Score=111.04 Aligned_cols=102 Identities=17% Similarity=0.146 Sum_probs=74.9
Q ss_pred ccccccccCCchhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCc----------hhhHHHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH----------VDFSSEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~----------~~~~~~~~~~l~~ 64 (161)
++|||++++.+.... .+|.|.......+.. .+...+.||||||+ +.+...+..+++.
T Consensus 39 ~~GKSslin~l~~~~~~~~~~~~~~~t~~~~~~~~~~------~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~ 112 (223)
T 4dhe_A 39 NAGKSTAINVLCNQKRLAFASKTPGRTQHINYFSVGP------AAEPVAHLVDLPGYGYAEVPGAAKAHWEQLLSSYLQT 112 (223)
T ss_dssp HHHHHHHHHHHTTCSSSSCTTCCCCSCCCEEEEEESC------TTSCSEEEEECCCCCSSCCCSTHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCcceeecCCCCcccceEEEEecC------CCCCcEEEEcCCCCCcccCChhhHHHHHHHHHHHHhc
Confidence 579999886664432 234554433222210 23578999999995 5567777788887
Q ss_pred ---cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 65 ---CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 65 ---~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+|++++|+|++++.......++..+...++|+++|+||+|+....
T Consensus 113 ~~~~d~vi~v~d~~~~~~~~~~~~~~~l~~~~~p~i~v~nK~Dl~~~~ 160 (223)
T 4dhe_A 113 RPQLCGMILMMDARRPLTELDRRMIEWFAPTGKPIHSLLTKCDKLTRQ 160 (223)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHGGGCCCEEEEEECGGGSCHH
T ss_pred CcCcCEEEEEEeCCCCCCHHHHHHHHHHHhcCCCEEEEEeccccCChh
Confidence 778999999998888777778888877899999999999997543
No 40
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA, ribosomal; 10.80A {Bos taurus}
Probab=99.54 E-value=7.8e-17 Score=137.70 Aligned_cols=102 Identities=23% Similarity=0.329 Sum_probs=86.9
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..+|+|.+.....+.+. ...+++|||||||++|...+..+++.+|++|+|+|+++
T Consensus 14 ~vGKTSLl~~L~~~~~~~~~~~giT~~i~~~~v~~~------~g~~i~~iDTPGhe~f~~~~~~~~~~aD~vILVVDa~d 87 (537)
T 3izy_P 14 DHGKTTLLDKLRKTQVAAMEAGGITQHIGAFLVSLP------SGEKITFLDTPGHAAFSAMRARGTQVTDIVILVVAADD 87 (537)
T ss_dssp TTTHHHHHHHHHHHHHHHSSSCCBCCCTTSCCBCSS------CSSCCBCEECSSSCCTTTSBBSSSBSBSSCEEECBSSS
T ss_pred CCCHHHHHHHHhCCCcccccCCceeEEEeEEEEEeC------CCCEEEEEECCChHHHHHHHHHHHccCCEEEEEEECCC
Confidence 68999999887533 35688887776655542 24589999999999999999999999999999999999
Q ss_pred CCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 77 GICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+..+++.+++..+...++|+++|+||+|+...+
T Consensus 88 g~~~qt~e~l~~~~~~~vPiIVViNKiDl~~~~ 120 (537)
T 3izy_P 88 GVMKQTVESIQHAKDAHVPIVLAINKCDKAEAD 120 (537)
T ss_dssp CCCHHHHHHHHHHHTTTCCEEECCBSGGGTTTS
T ss_pred CccHHHHHHHHHHHHcCCcEEEEEecccccccc
Confidence 999999999999988999999999999997543
No 41
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=99.53 E-value=3.2e-15 Score=110.29 Aligned_cols=100 Identities=15% Similarity=0.107 Sum_probs=69.5
Q ss_pred ccccccccCCchhHH----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+.... ...-|+......+. ...+++.||||||++++...+..+++.+|++|+|+|+++.
T Consensus 27 ~~GKSsl~~~l~~~~~~~~~~~~t~~~~~~~~~-------~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~ 99 (199)
T 4bas_A 27 NSGKTTIINQVKPAQSSSKHITATVGYNVETFE-------KGRVAFTVFDMGGAKKFRGLWETYYDNIDAVIFVVDSSDH 99 (199)
T ss_dssp TSCHHHHHHHHSCCC----CCCCCSSEEEEEEE-------ETTEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEETTCG
T ss_pred CCCHHHHHHHHhcCCCcccccccccceeEEEEE-------eCCEEEEEEECCCCHhHHHHHHHHHhcCCEEEEEEECCcH
Confidence 689999875543211 12233333333333 3378999999999999999999999999999999999976
Q ss_pred CChhHH-HHHHHHHHc-----------CCCcEEEEECCcchhh
Q psy2609 78 ICAQTQ-VALKQAWLE-----------KIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~~-~~~~~~~~~-----------~~p~ilv~NK~Dl~~~ 108 (161)
.+.... ..+..+... ++|+++|+||+|+...
T Consensus 100 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 142 (199)
T 4bas_A 100 LRLCVVKSEIQAMLKHEDIRRELPGGGRVPFLFFANKMDAAGA 142 (199)
T ss_dssp GGHHHHHHHHHHHHTSHHHHSBCTTSCBCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHHHhChhhhhcccccCCCCEEEEEECcCCCCC
Confidence 443332 222222222 8999999999999754
No 42
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.53 E-value=3.8e-15 Score=124.14 Aligned_cols=100 Identities=24% Similarity=0.266 Sum_probs=70.8
Q ss_pred ccccccccCCchh------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCch--------hhHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKD------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV--------DFSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~--------~~~~~~~~~l~~~d~ 67 (161)
|+|||++++.+.. +..+|+|++.....+.|. +..+.+|||||++ ++...+..+++.+|+
T Consensus 13 nvGKStL~n~l~~~~~~~v~~~~g~T~d~~~~~~~~~-------~~~~~l~DT~G~~~~~~~~~~~~~~~~~~~~~~ad~ 85 (436)
T 2hjg_A 13 NVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-------NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADV 85 (436)
T ss_dssp TSSHHHHHHHHEEEECC-----------CEEEECTTC-------SSCCEEEC---------CHHHHHHHHHHHHHHHCSE
T ss_pred CCCHHHHHHHHhCCCceeecCCCCCccceEEEEEEEC-------CceEEEEECCCCCCcchhHHHHHHHHHHHHHHhCCE
Confidence 7899999876643 446788887666555555 5689999999985 678889999999999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|+|++.+.+..+..+...+...++|+++|+||+|+...
T Consensus 86 il~vvD~~~~~~~~d~~~~~~l~~~~~pvilv~NK~D~~~~ 126 (436)
T 2hjg_A 86 IIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 126 (436)
T ss_dssp EEEEEETTTCSCHHHHHHHHHHTTCCSCEEEEEECCCC---
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCccc
Confidence 99999999999888888878777789999999999998753
No 43
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.53 E-value=4.7e-15 Score=124.21 Aligned_cols=100 Identities=22% Similarity=0.217 Sum_probs=78.8
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCC----------chhhHHHHH-HHHHh
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPG----------HVDFSSEVS-TAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG----------~~~~~~~~~-~~l~~ 64 (161)
++||+++++.+..+ ..+|+|.+.....+.+. +.++.|||||| +++|..... .+++.
T Consensus 205 ~vGKSslin~l~~~~~~~~~~~~gtt~~~~~~~~~~~-------~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 277 (456)
T 4dcu_A 205 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-------QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR 277 (456)
T ss_dssp TSSHHHHHHHHHTSTTEEECC------CTTSEEEEET-------TEEEEETTGGGTTTBTTBCCCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCccccCCCCCeEEEEEEEEEEEC-------CceEEEEECCCCCcCcccchHHHHHHHHHHHHHHhh
Confidence 68999998766533 45688888777777776 56999999999 677776644 58899
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|++++|+|++++...++..++..+...++|+++|+||+|+...
T Consensus 278 ad~~llviD~~~~~~~~~~~~~~~~~~~~~~~ilv~NK~Dl~~~ 321 (456)
T 4dcu_A 278 SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 321 (456)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CCEEEEEEeCCCCcCHHHHHHHHHHHHcCCCEEEEEEChhcCCC
Confidence 99999999999999999998888888889999999999999753
No 44
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=99.53 E-value=5e-15 Score=108.68 Aligned_cols=71 Identities=17% Similarity=0.191 Sum_probs=55.9
Q ss_pred CCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHH----HHHHH-----cCCCcEEEEECCcchhh
Q psy2609 38 PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVAL----KQAWL-----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~----~~~~~-----~~~p~ilv~NK~Dl~~~ 108 (161)
+..+++.+|||||+++|...+..+++.+|++|+|+|++++........+ .++.. .++|+++|+||+|+...
T Consensus 71 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~~~~~~~s~~~l~~~l~~~~~~~~~~piilv~NK~Dl~~~ 150 (198)
T 3t1o_A 71 GFKTRFHLYTVPGQVFYNASRKLILRGVDGIVFVADSAPNRLRANAESMRNMRENLAEYGLTLDDVPIVIQVNKRDLPDA 150 (198)
T ss_dssp SCEEEEEEEECCSCCSCSHHHHHHTTTCCEEEEEEECCGGGHHHHHHHHHHHHHHHHHTTCCTTSSCEEEEEECTTSTTC
T ss_pred CCceEEEEEeCCChHHHHHHHHHHHhcCCEEEEEEECCcchhhHhHHHHHHHHHHHHhhccccCCCCEEEEEEchhcccc
Confidence 5578999999999999999999999999999999999855433333322 22222 58899999999999653
No 45
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=99.52 E-value=1.9e-14 Score=107.40 Aligned_cols=102 Identities=17% Similarity=0.164 Sum_probs=67.9
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. +..+++.||||||++++...+..+++.+|++|+|+|+++
T Consensus 39 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 113 (201)
T 2hup_A 39 SVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQ-----GKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITK 113 (201)
T ss_dssp TSSHHHHHHHHHHSCC----------CEEEEEEEET-----TEEEEEEEECCTTCGGGHHHHHHHHTTCSEEEEEEETTB
T ss_pred CCCHHHHHHHHhhCCCCCCCCCCcceEEEEEEEEEC-----CEEEEEEEEECCCcHhHHHHHHHHHhhCCEEEEEEECCC
Confidence 689999985553 3444444444434444444 446899999999999999999999999999999999985
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+... ..++..+.. .++|+++|+||+|+...
T Consensus 114 ~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 149 (201)
T 2hup_A 114 RSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSEL 149 (201)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCccccc
Confidence 432221 122222322 46899999999999753
No 46
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=99.52 E-value=3.3e-14 Score=106.45 Aligned_cols=103 Identities=17% Similarity=0.126 Sum_probs=67.5
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH-HHHHHHHhcCEEEEEEeCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS-EVSTAVRLCDGTIIVVDCVEGI 78 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~-~~~~~l~~~d~~ilVvd~~~~~ 78 (161)
++|||+++..+.... ....++......+.+.. ...+++.+|||||++++.. .+..+++.+|++++|+|++. .
T Consensus 17 ~~GKTsli~~l~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~i~v~d~~~-~ 91 (214)
T 2fh5_B 17 DSGKTLLFVRLLTGQYRDTQTSITDSSAIYKVNN----NRGNSLTLIDLPGHESLRFQLLDRFKSSARAVVFVVDSAA-F 91 (214)
T ss_dssp TSSHHHHHHHHHHSCCCCBCCCCSCEEEEEECSS----TTCCEEEEEECCCCHHHHHHHHHHHGGGEEEEEEEEETTT-H
T ss_pred CCCHHHHHHHHhCCCcccccCCcceeeEEEEecC----CCccEEEEEECCCChhHHHHHHHHHHhhCCEEEEEEECCC-c
Confidence 689999986664332 11223222333333331 2268899999999999988 78888999999999999985 1
Q ss_pred ChhHHHH---HHHH-H-----HcCCCcEEEEECCcchhhh
Q psy2609 79 CAQTQVA---LKQA-W-----LEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 79 ~~~~~~~---~~~~-~-----~~~~p~ilv~NK~Dl~~~~ 109 (161)
....... |... . ..++|+++|+||+|+....
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 131 (214)
T 2fh5_B 92 QREVKDVAEFLYQVLIDSMALKNSPSLLIACNKQDIAMAK 131 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSTTCCEEEEEEECTTSTTCC
T ss_pred CHHHHHHHHHHHHHHhhhhhcccCCCEEEEEECCCCCCcc
Confidence 1112222 2211 1 2368999999999997543
No 47
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=99.52 E-value=2e-15 Score=111.16 Aligned_cols=102 Identities=19% Similarity=0.129 Sum_probs=73.4
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..++++.+.....+.+. +..+.+.||||||++++...+..+++.+|++++|+|+++
T Consensus 26 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 100 (196)
T 3tkl_A 26 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 100 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSSEEEEEEEEEET-----TEEEEEEEEEECCSGGGCTTHHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-----CEEEEEEEEECCCcHhhhhhHHHHHhhCCEEEEEEECcC
Confidence 6899999866543 334555555554555554 446889999999999999999999999999999999986
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+... ..++..+.. .++|+++|+||+|+...
T Consensus 101 ~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 136 (196)
T 3tkl_A 101 QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 136 (196)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 432222 222222222 37899999999999754
No 48
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET: GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP: b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Probab=99.52 E-value=2.1e-15 Score=130.24 Aligned_cols=106 Identities=26% Similarity=0.276 Sum_probs=82.0
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeec---------CC--CCCCceeEEEEeCCCchhhHHHHHHHHHhc
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKD---------NK--DTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~---------~~--~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~ 65 (161)
++|||++++.+....- +|+|.......+.+.. .. .......++|||||||++|...+..+++.+
T Consensus 15 d~GKTTLl~~L~~~~v~~~e~ggiT~~ig~~~~~~~~~~~~~~~~~~~~~v~~~~~~i~liDTPGhe~F~~~~~r~~~~a 94 (594)
T 1g7s_A 15 DHGKTTLLDHIRGSAVASREAGGITQHIGATEIPMDVIEGICGDFLKKFSIRETLPGLFFIDTPGHEAFTTLRKRGGALA 94 (594)
T ss_dssp TSSHHHHHHHHHHHHHSCC----CCCBTTEEEEEHHHHHHHSCGGGGGCGGGGTCCEEEEECCCTTSCCTTSBCSSSBSC
T ss_pred CCcHHHHHHHHhcccCccccCCceecccCeEEEeechhhhhccccccccccccccCCEEEEECCCcHHHHHHHHHHHhhC
Confidence 7899999988865432 2666665555444320 00 000122599999999999998888889999
Q ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
|++|+|+|+++|+..++...+..+...++|+++|+||+|+..
T Consensus 95 D~aILVvDa~~Gv~~qT~e~l~~l~~~~vPiIVViNKiDl~~ 136 (594)
T 1g7s_A 95 DLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIH 136 (594)
T ss_dssp SEEEEEEETTTCCCHHHHHHHHHHHHTTCCEEEEEECGGGST
T ss_pred CEEEEEEECCCCccHhHHHHHHHHHHcCCeEEEEeccccccc
Confidence 999999999999999999999999889999999999999964
No 49
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.52 E-value=1.2e-14 Score=104.02 Aligned_cols=102 Identities=20% Similarity=0.106 Sum_probs=71.5
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+ ..+..+.++.......+.+. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T 1ek0_A 13 AVGKSSIVLRFVSNDFAENKEPTIGAAFLTQRVTIN-----EHTVKFEIWDTAGQERFASLAPXYYRNAQAALVVYDVTK 87 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-----TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEECCCChhhhhhhhhhhccCcEEEEEEecCC
Confidence 68999998544 33344444444333344444 446799999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+..... ++..+.. .++|+++|+||+|+...
T Consensus 88 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (170)
T 1ek0_A 88 PQSFIKARHWVKELHEQASKDIIIALVGNKIDXLQE 123 (170)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGS
T ss_pred hHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 43322222 2222222 47899999999999754
No 50
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=99.52 E-value=1.2e-14 Score=105.44 Aligned_cols=102 Identities=20% Similarity=0.067 Sum_probs=71.9
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.......+.+. +..+++.||||||++++...+..+++.+|++++|+|+++
T Consensus 22 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 96 (181)
T 2efe_B 22 GAGKSSLVLRFVKDQFVEFQESTIGAAFFSQTLAVN-----DATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVFDVTN 96 (181)
T ss_dssp TSCHHHHHHHHHHCCCTTTSCCCSCCSEEEEEEEET-----TEEEEEEEEECCCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCcCCCCceeEEEEEEEEEC-----CEEEEEEEEeCCCChhhhhhhHHHhccCCEEEEEEECCC
Confidence 689999975553 3334444444333444444 446799999999999999999999999999999999986
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+... ..++..+.. .++|+++|+||+|+...
T Consensus 97 ~~s~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 132 (181)
T 2efe_B 97 QASFERAKKWVQELQAQGNPNMVMALAGNKSDLLDA 132 (181)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 443222 223333333 37889999999999643
No 51
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=99.52 E-value=3e-14 Score=101.77 Aligned_cols=100 Identities=15% Similarity=0.040 Sum_probs=69.2
Q ss_pred ccccccccCCchhHHH--cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE--RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~--~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+....- ..-|+......+.+. .+++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 10 ~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 82 (164)
T 1r8s_A 10 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-------NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 82 (164)
T ss_dssp TSSHHHHHHHHHHHCSSCCCCCSSCCEEEEECS-------SCEEEEEECCCCGGGHHHHHHHTTTCSEEEEEEETTCGGG
T ss_pred CCCHHHHHHHHHcCCcCcccCcCceeEEEEEEC-------CEEEEEEEcCCChhhHHHHHHHhccCCEEEEEEECCCHHH
Confidence 6899999877654321 112333333333333 6899999999999999999999999999999999986533
Q ss_pred hhHH-HHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 80 AQTQ-VALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~~-~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
.... ..+..+.. .++|+++|+||+|+...
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 116 (164)
T 1r8s_A 83 VNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 116 (164)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHhchhhcCCeEEEEEECcCCcCC
Confidence 2222 22222222 37899999999999653
No 52
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=99.51 E-value=1.2e-15 Score=110.43 Aligned_cols=102 Identities=21% Similarity=0.093 Sum_probs=72.8
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+ ..+..++++.+.....+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 19 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (181)
T 3tw8_B 19 GVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEIN-----GEKVKLQIWDTAGQERFRTITSTYYRGTHGVIVVYDVTS 93 (181)
T ss_dssp TSCHHHHHHHHCSCC---CCTTTBSEEEEEEEEEET-----TEEEEEEEEEETTGGGCSSCCGGGGTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCccCCCceeEEEEEEEEEC-----CEEEEEEEEcCCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence 68999987544 34445666665555555555 446899999999999998888999999999999999986
Q ss_pred CCChhHHH-HHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
+.+..... ++..+.. .++|+++|+||+|+...
T Consensus 94 ~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 128 (181)
T 3tw8_B 94 AESFVNVKRWLHEINQNCDDVCRILVGNKNDDPER 128 (181)
T ss_dssp HHHHHHHHHHHHHHHHHCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEECCCCchh
Confidence 43332222 2222222 36899999999998754
No 53
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=99.51 E-value=1.2e-14 Score=106.93 Aligned_cols=102 Identities=20% Similarity=0.116 Sum_probs=70.5
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH-HHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS-SEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~-~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||++++.+.. +..+.++.+.....+.+. +..+++.||||||++++. ..+..+++.+|++|+|+|++
T Consensus 30 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~d~iilv~D~~ 104 (189)
T 1z06_A 30 NVGKTCLTYRFCAGRFPDRTEATIGVDFRERAVDID-----GERIKIQLWDTAGQERFRKSMVQHYYRNVHAVVFVYDMT 104 (189)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCCSCCEEEEEEEET-----TEEEEEEEEECCCSHHHHTTTHHHHHTTCCEEEEEEETT
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCcceEEEEEEEEEC-----CEEEEEEEEECCCchhhhhhhhHHHhcCCCEEEEEEECc
Confidence 6899999866542 333444444333444444 446899999999999998 78899999999999999998
Q ss_pred CCCChhHH-HHHHHH----HHcCCCcEEEEECCcchhh
Q psy2609 76 EGICAQTQ-VALKQA----WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 76 ~~~~~~~~-~~~~~~----~~~~~p~ilv~NK~Dl~~~ 108 (161)
+..+.... .++..+ ...++|+++|+||+|+...
T Consensus 105 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 1z06_A 105 NMASFHSLPAWIEECKQHLLANDIPRILVGNKCDLRSA 142 (189)
T ss_dssp CHHHHHTHHHHHHHHHHHCCCSCCCEEEEEECTTCGGG
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 64322111 111222 1357899999999999654
No 54
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.51 E-value=2.6e-15 Score=110.80 Aligned_cols=102 Identities=18% Similarity=0.129 Sum_probs=71.8
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+....- +.++.......+... +..+.+.||||||++++...+..+++.+|++++|+|+++
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 107 (191)
T 3dz8_A 33 SVGKTSFLFRYADDTFTPAFVSTVGIDFKVKTVYRH-----EKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITN 107 (191)
T ss_dssp TSSHHHHHHHHHHHTTCCCEEEEETTTEEEEEEEET-----TTTEEEEEECHHHHHHCHHHHHHHHTTCCEEEEEEETTC
T ss_pred CcCHHHHHHHHhcCCCCcccCCCeeeEEEEEEEEEC-----CEEEEEEEEeCCChHHHHHHHHHHHccCCEEEEEEECcC
Confidence 6899999987765441 222222222333333 557899999999999999999999999999999999985
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
...... ..++..+.. .++|+++|+||+|+...
T Consensus 108 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 143 (191)
T 3dz8_A 108 EESFNAVQDWATQIKTYSWDNAQVILVGNKCDMEEE 143 (191)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 432221 222333333 47899999999999654
No 55
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=99.51 E-value=2.1e-15 Score=108.14 Aligned_cols=100 Identities=17% Similarity=0.078 Sum_probs=67.6
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 87 (170)
T 1g16_A 13 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-----GKKVKLQIWDTAGQERFRTITTAYYRGAMGIILVYDITD 87 (170)
T ss_dssp TSSHHHHHHHHHHCCCCC-------CCEEEEEEESS-----SCEEEEEEECCTTGGGTSCCCHHHHTTEEEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEeCCCChhhhhhHHHHhccCCEEEEEEECCC
Confidence 689999976553 3445555554444444444 457899999999999998889999999999999999986
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcch
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRL 106 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~ 106 (161)
..+... ..++..+.. .++|+++|+||+|+.
T Consensus 88 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 121 (170)
T 1g16_A 88 ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 121 (170)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCC
Confidence 433222 222222222 378999999999994
No 56
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=99.51 E-value=3.1e-14 Score=105.69 Aligned_cols=101 Identities=19% Similarity=0.130 Sum_probs=66.2
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..+.++.+.....+.+. +..+.+.||||||++++...+..+++.+|++|+|+|+++
T Consensus 38 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~d~~~ 112 (199)
T 2p5s_A 38 AVGKSSFLMRLCKNEFRENISATLGVDFQMKTLIVD-----GERTVLQLWDTAGQERFRSIAKSYFRKADGVLLLYDVTC 112 (199)
T ss_dssp TSSHHHHHHHHHHCCCC----------CEEEEEEET-----TEEEEEEEEECTTCTTCHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCccCCCCccceeEEEEEEEC-----CEEEEEEEEECCCCcchhhhHHHHHhhCCEEEEEEECCC
Confidence 689999986653 3333333333333344444 446889999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
........ ++..+.. .++|+++|+||+|+..
T Consensus 113 ~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~ 147 (199)
T 2p5s_A 113 EKSFLNIREWVDMIEDAAHETVPIMLVGNKADIRD 147 (199)
T ss_dssp HHHHHTHHHHHHHHHHHC---CCEEEEEECGGGHH
T ss_pred hHHHHHHHHHHHHHHHhcCCCCCEEEEEECccccc
Confidence 44322222 2222222 4789999999999974
No 57
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=99.51 E-value=1.7e-14 Score=104.48 Aligned_cols=103 Identities=14% Similarity=0.001 Sum_probs=72.8
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+.. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 16 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 91 (178)
T 2hxs_A 16 ASGKTSLTTCFAQETFGKQYKQTIGLDFFLRRITLPG----NLNVTLQIWDIGGQTIGGKMLDKYIYGAQGVLLVYDITN 91 (178)
T ss_dssp TSSHHHHHHHHHGGGTTHHHHHTTTSSEEEEEEEETT----TEEEEEEEEECTTCCTTCTTHHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCcCCCCCCCceeEEEEEEEEEeCC----CCEEEEEEEECCCCccccchhhHHHhhCCEEEEEEECCC
Confidence 689999986553 45566666655555555541 135899999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHHH-----cCCC-cEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQAWL-----EKIQ-PILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~-----~~~p-~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+.. .+.| +++|+||+|+...
T Consensus 92 ~~s~~~~~~~~~~i~~~~~~~~~~~~iilv~nK~Dl~~~ 130 (178)
T 2hxs_A 92 YQSFENLEDWYTVVKKVSEESETQPLVALVGNKIDLEHM 130 (178)
T ss_dssp HHHHHTHHHHHHHHHHHHHHHTCCCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhcccCCCCeEEEEEEccccccc
Confidence 4332222 22222222 2567 6899999999753
No 58
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=5.4e-15 Score=110.89 Aligned_cols=102 Identities=18% Similarity=0.099 Sum_probs=71.1
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..++++.+.....+.+. +..+++.||||||+++|...+..+++.+|++++|+|+++
T Consensus 36 ~vGKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~ 110 (201)
T 2ew1_A 36 GVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEIN-----GEKVKLQIWDTAGQERFRSITQSYYRSANALILTYDITC 110 (201)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCCSEEEEEEEEEET-----TEEEEEEEEEECCSGGGHHHHGGGSTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCC
Confidence 6899999866542 333344444333444444 446899999999999999999999999999999999986
Q ss_pred CCChhH-HHHHHHHH---HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
..+... ..++..+. ..++|+++|+||+|+...
T Consensus 111 ~~s~~~~~~~~~~i~~~~~~~~piilv~NK~Dl~~~ 146 (201)
T 2ew1_A 111 EESFRCLPEWLREIEQYASNKVITVLVGNKIDLAER 146 (201)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 433221 12222222 246889999999999743
No 59
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=99.50 E-value=5.2e-15 Score=106.94 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=71.3
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..++++++.....+.+. +..+.+.+|||||++++...+..+++.+|++++|+|++.
T Consensus 24 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 98 (179)
T 2y8e_A 24 SVGKTSLITRFMYDSFDNTYQATIGIDFLSKTMYLE-----DRTVRLQLWDTAGQERFRSLIPSYIRDSTVAVVVYDITN 98 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEEET-----TEEEEEEEEEECCSGGGGGGSHHHHHTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeeEEEEEEEEEC-----CeEEEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCC
Confidence 6899999866542 334444444444444444 446799999999999999999999999999999999985
Q ss_pred CCChhH-HHHHHHHH---HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
...... ..++..+. ..++|+++|+||+|+...
T Consensus 99 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 134 (179)
T 2y8e_A 99 TNSFHQTSKWIDDVRTERGSDVIIMLVGNKTDLSDK 134 (179)
T ss_dssp HHHHHTHHHHHHHHHHHHTTSSEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCccccc
Confidence 332211 12222222 247899999999999754
No 60
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=99.50 E-value=1.6e-14 Score=104.47 Aligned_cols=98 Identities=16% Similarity=0.108 Sum_probs=66.6
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH------HHHHHHHH--hcCEE
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS------SEVSTAVR--LCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~------~~~~~~l~--~~d~~ 68 (161)
++|||+++..+.. +..+|+|++.....+.+. +.++.+|||||++++. .....+++ .+|++
T Consensus 13 gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (165)
T 2wji_A 13 NVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-------GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLV 85 (165)
T ss_dssp TSSHHHHHHHHHCCSSSCC-----CCCCCEEEEEET-------TEEEEEEECCCCSCSSSSSHHHHHHHHHHHHHCCSEE
T ss_pred CCCHHHHHHHHhCCCeeccCCCCcceeeeEEEEEEC-------CcEEEEEECCCcccCCCcchhHHHHHHHHhcCCCCEE
Confidence 6899999765532 334566766655555554 5789999999998763 44566665 79999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++|+|++.. .....++..+...++|+++|+||+|+...
T Consensus 86 i~v~D~~~~--~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 123 (165)
T 2wji_A 86 VNIVDATAL--ERNLYLTLQLMEMGANLLLALNKMDLAKS 123 (165)
T ss_dssp EEEEETTCH--HHHHHHHHHHHHTTCCEEEEEECHHHHHH
T ss_pred EEEecCCch--hHhHHHHHHHHhcCCCEEEEEEchHhccc
Confidence 999999752 22233344445568999999999999754
No 61
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=99.50 E-value=8.2e-15 Score=104.45 Aligned_cols=101 Identities=19% Similarity=0.136 Sum_probs=67.7
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.++ ......+.+. +..+.+.+|||||++++......+++.+|++++|+|+++
T Consensus 13 ~~GKSsli~~l~~~~~~~~~~~~~~-~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 86 (167)
T 1kao_A 13 GVGKSALTVQFVTGTFIEKYDPTIE-DFYRKEIEVD-----SSPSVLEILDTAGTEQFASMRDLYIKNGQGFILVYSLVN 86 (167)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCC-EEEEEEEEET-----TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCcccCCCCcc-eeEEEEEEEC-----CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEeCCC
Confidence 689999976654322 11111 1112223333 446789999999999999999999999999999999986
Q ss_pred CCChhHH-H----HHHHHHHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-V----ALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~----~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... . +.......++|+++|+||+|+...
T Consensus 87 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1kao_A 87 QQSFQDIKPMRDQIIRVKRYEKVPVILVGNKVDLESE 123 (167)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECCccccc
Confidence 4322221 1 222222247999999999999653
No 62
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=99.50 E-value=7.9e-15 Score=104.98 Aligned_cols=102 Identities=18% Similarity=0.033 Sum_probs=70.2
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. ...+.++.......+.+. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 16 ~~GKssli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (170)
T 1r2q_A 16 AVGKSSLVLRFVKGQFHEFQESTIGAAFLTQTVCLD-----DTTVKFEIWDTAGQERYHSLAPMYYRGAQAAIVVYDITN 90 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCSSEEEEEEEEEET-----TEEEEEEEEEECCSGGGGGGHHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-----CEEEEEEEEeCCCcHHhhhhhHHhccCCCEEEEEEECCC
Confidence 6899999866543 223333333323333333 447899999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+.. .++|+++|+||+|+...
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1r2q_A 91 EESFARAKNWVKELQRQASPNIVIALSGNKADLANK 126 (170)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccCccc
Confidence 4332222 22222222 37888999999999653
No 63
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=99.50 E-value=4.7e-15 Score=106.14 Aligned_cols=102 Identities=18% Similarity=0.128 Sum_probs=70.5
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..++++.+.....+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 15 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 89 (168)
T 1z2a_A 15 AVGKSSMIQRYCKGIFTKDYKKTIGVDFLERQIQVN-----DEDVRLMLWDTAGQEEFDAITKAYYRGAQACVLVFSTTD 89 (168)
T ss_dssp TSSHHHHHHHHHHCCCCCCSSCCCSSSEEEEEEEET-----TEEEEEEEECCTTGGGTTCCCHHHHTTCCEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceEEEEEEEEEEEC-----CEEEEEEEEcCCCcHhHHHHHHHHhcCCCEEEEEEECcC
Confidence 68999998665432 23333333333344443 446799999999999998889999999999999999986
Q ss_pred CCChhHH-HHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+.. .++|+++|+||+|+...
T Consensus 90 ~~s~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1z2a_A 90 RESFEAISSWREKVVAEVGDIPTALVQNKIDLLDD 124 (168)
T ss_dssp HHHHHTHHHHHHHHHHHHCSCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEECcccCcc
Confidence 4322221 22222222 48999999999999753
No 64
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=99.50 E-value=9.7e-15 Score=121.66 Aligned_cols=100 Identities=22% Similarity=0.210 Sum_probs=75.3
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCc----------hhhHHH-HHHHHHh
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH----------VDFSSE-VSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~----------~~~~~~-~~~~l~~ 64 (161)
|+|||++++.+..+ ..+|+|++.....+.+. +..+.||||||+ ++|... ...+++.
T Consensus 185 nvGKSSLin~l~~~~~~~~~~~~gtT~d~~~~~~~~~-------~~~~~l~DT~G~~~~~~~~~~~e~~~~~~~~~~~~~ 257 (436)
T 2hjg_A 185 NVGKSSLVNAMLGEERVIVSNVAGTTRDAVDTSFTYN-------QQEFVIVDTAGMRKKGKVYETTEKYSVLRALKAIDR 257 (436)
T ss_dssp TSSHHHHHHHHHTSTTEEEC---------CCEEEEET-------TEEEEETTHHHHTCBTTBCCCCSHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCceeecCCCCceeeeeEEEEEEC-------CeEEEEEECCCcCcCccccchHHHHHHHHHHHHHHh
Confidence 78999998666433 35788888777777776 568999999998 556554 3468999
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|++++|+|++++.+.++..++..+...++|+++|+||+|+...
T Consensus 258 ad~~llv~D~~~~~s~~~~~~~~~~~~~~~~iiiv~NK~Dl~~~ 301 (436)
T 2hjg_A 258 SEVVAVVLDGEEGIIEQDKRIAGYAHEAGKAVVIVVNKWDAVDK 301 (436)
T ss_dssp CSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSCC
T ss_pred CCEEEEEEcCCcCCcHHHHHHHHHHHHcCCcEEEEEECccCCCc
Confidence 99999999999999988888888777789999999999999753
No 65
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=99.50 E-value=6e-15 Score=107.60 Aligned_cols=101 Identities=11% Similarity=0.055 Sum_probs=52.1
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..++++.+.....+.+. +..+++.||||||++++...+..+++.+|++++|+|+++
T Consensus 18 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (183)
T 2fu5_C 18 GVGKTCVLFRFSEDAFNSTFISTIGIDFKIRTIELD-----GKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITN 92 (183)
T ss_dssp CC----------------CHHHHHCEEEEEEEEEET-----TEEEEEEEEEC---------CCTTTTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCCCCCCcccceeEEEEEEEC-----CEEEEEEEEcCCCChhhhhhHHHHHhcCCEEEEEEECcC
Confidence 68999999877533 33444444333444444 446899999999999999888999999999999999986
Q ss_pred CCChhHH-HHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .++..+.. .++|+++|+||+|+..
T Consensus 93 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (183)
T 2fu5_C 93 EKSFDNIRNWIRNIEEHASADVEKMILGNKCDVND 127 (183)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEEC--CCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECccCCc
Confidence 4332222 22222322 3789999999999964
No 66
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.50 E-value=2.1e-15 Score=109.46 Aligned_cols=101 Identities=15% Similarity=0.107 Sum_probs=63.1
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||++++.+... ..++++.+.....+... +..+++.+|||||++++...+..+++.+|++++|+|++
T Consensus 20 ~~GKssli~~l~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~ 94 (180)
T 2g6b_A 20 GVGKTCLLVRFKDGAFLAGTFISTVGIDFRNKVLDVD-----GVKVKLQMWDTAGQERFRSVTHAYYRDAHALLLLYDVT 94 (180)
T ss_dssp TSSHHHHHHHHHHSCCCCCCCCCCCSCEEEEEEEEET-----TEEEEEEEEECCCC--------CCGGGCSEEEEEEETT
T ss_pred CCCHHHHHHHHHhCCCCCCCcCCceeeEEEEEEEEEC-----CEEEEEEEEeCCCcHHHHHHHHHHccCCCEEEEEEECC
Confidence 68999998666432 23344444333333333 44679999999999999999999999999999999998
Q ss_pred CCCChhH-HHHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 76 EGICAQT-QVALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 76 ~~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
+..+... ..++..+.. .++|+++|+||+|+..
T Consensus 95 ~~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 130 (180)
T 2g6b_A 95 NKASFDNIQAWLTEIHEYAQHDVALMLLGNKVDSAH 130 (180)
T ss_dssp CHHHHHTHHHHHHHHHHHSCTTCEEEEEEECCSTTS
T ss_pred CHHHHHHHHHHHHHHHHhCCCCCcEEEEEECcccCc
Confidence 6433222 222222222 5789999999999975
No 67
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=99.49 E-value=7.6e-15 Score=105.45 Aligned_cols=102 Identities=16% Similarity=0.033 Sum_probs=60.3
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH-HHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS-EVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~-~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||++++.+. .......+.+.....+.+. +..+++.+|||||++++.. ....+++.+|++++|+|++
T Consensus 12 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~d~~i~v~d~~ 86 (169)
T 3q85_A 12 GVGKSTLAGTFGGLQGDHAHEMENSEDTYERRIMVD-----KEEVTLIVYDIWEQGDAGGWLQDHCLQTGDAFLIVFSVT 86 (169)
T ss_dssp TSSHHHHHHHHHCC------------CEEEEEEEET-----TEEEEEEEECCCCC--------CHHHHHCSEEEEEEETT
T ss_pred CCCHHHHHHHHHhccCcccccCCCcCCeeeEEEEEC-----CeEEEEEEEECCCccccchhhhhhhhccCCEEEEEEECC
Confidence 689999986652 2223333444433444444 5578999999999999876 6777789999999999998
Q ss_pred CCCChhH-HHHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 76 EGICAQT-QVALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 76 ~~~~~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
+..+... ..++..+.. .++|+++|+||+|+...
T Consensus 87 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 124 (169)
T 3q85_A 87 DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLARS 124 (169)
T ss_dssp CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCGGG
T ss_pred ChHHHHHHHHHHHHHHhcccCCCCCEEEEeeCcchhhc
Confidence 6322211 122222222 37999999999999743
No 68
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=99.49 E-value=3.2e-14 Score=104.64 Aligned_cols=98 Identities=15% Similarity=0.162 Sum_probs=71.5
Q ss_pred ccccccccCCchhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCC----------chhhHHHHHHHHHh
Q psy2609 2 LCMVSSYMDSRKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPG----------HVDFSSEVSTAVRL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG----------~~~~~~~~~~~l~~ 64 (161)
++|||++++.+..+. .+|.|..... +.+ +.++.+||||| ++.+...+..+++.
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~~t~~~~~--~~~--------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T 1svi_A 33 NVGKSSFINSLINRKNLARTSSKPGKTQTLNF--YII--------NDELHFVDVPGYGFAKVSKSEREAWGRMIETYITT 102 (195)
T ss_dssp TSSHHHHHHHHHTC-------------CCEEE--EEE--------TTTEEEEECCCBCCCSSCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCCccccCCCCCceeeEEE--EEE--------CCcEEEEECCCCCccccCHHHHHHHHHHHHHHHhh
Confidence 689999986664322 2333333221 111 22799999999 77788888889988
Q ss_pred c---CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 65 C---DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 65 ~---d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+ |++++|+|++.+.......++.++...++|+++|+||+|+....
T Consensus 103 ~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~~ 150 (195)
T 1svi_A 103 REELKAVVQIVDLRHAPSNDDVQMYEFLKYYGIPVIVIATKADKIPKG 150 (195)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCGG
T ss_pred hhcCCEEEEEEECCCCCCHHHHHHHHHHHHcCCCEEEEEECcccCChH
Confidence 8 99999999998888777777777777899999999999997543
No 69
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation, GTP-binding domain, maturation enzyme, oxidoreductase; 2.99A {Thermotoga neapolitana}
Probab=99.49 E-value=2.9e-14 Score=118.72 Aligned_cols=100 Identities=22% Similarity=0.169 Sum_probs=76.6
Q ss_pred ccccccccCCch------hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH-------HHHHHHHHhcCEE
Q psy2609 2 LCMVSSYMDSRK------DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS-------SEVSTAVRLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~------~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~-------~~~~~~l~~~d~~ 68 (161)
++|||++++.+. .+..+|+|++.....+.+.. ..++.+|||||+++|. ..+..+++.+|++
T Consensus 44 ~vGKSTLin~L~~~~~~~~~~~~gtT~d~~~~~~~~~~------~~~l~liDTpG~~d~~~l~~~~~~~~~~~l~~aD~v 117 (423)
T 3qq5_A 44 NVGKSSFMNALVGQNVSIVSDYAGTTTDPVYKSMELHP------IGPVTLVDTPGLDDVGELGRLRVEKARRVFYRADCG 117 (423)
T ss_dssp STTTTTTTTSSCC-------------CCCCEEEEEETT------TEEEEEEECSSTTCCCTTCCCCHHHHHHHHTSCSEE
T ss_pred CCCHHHHHHHHHcCCCCccCCCCCeeeeeEEEEEEECC------CCeEEEEECcCCCcccchhHHHHHHHHHHHhcCCEE
Confidence 799999998874 35578889888888887762 2489999999998653 3467889999999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
|+|+|+ +...++..++..+...++|+++|+||+|+....
T Consensus 118 llVvD~--~~~~~~~~~l~~l~~~~~piIvV~NK~Dl~~~~ 156 (423)
T 3qq5_A 118 ILVTDS--APTPYEDDVVNLFKEMEIPFVVVVNKIDVLGEK 156 (423)
T ss_dssp EEECSS--SCCHHHHHHHHHHHHTTCCEEEECCCCTTTTCC
T ss_pred EEEEeC--CChHHHHHHHHHHHhcCCCEEEEEeCcCCCCcc
Confidence 999998 667778888888888899999999999997644
No 70
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=99.49 E-value=6.6e-15 Score=106.65 Aligned_cols=104 Identities=15% Similarity=0.073 Sum_probs=59.8
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+.. +....+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 93 (182)
T 1ky3_A 18 GVGKTSLMHRYVNDKYSQQYKATIGADFLTKEVTVDG----DKVATMQVWDTAGQERFQSLGVAFYRGADCCVLVYDVTN 93 (182)
T ss_dssp TSSHHHHHHHHHHSCCCTTC---CCCSCEEEEECCSS----SCCEEEEEECCC----------CCSTTCCEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCcCCcccCCccceEEEEEEEEEcC----CcEEEEEEEECCCChHhhhhhHHHhhcCCEEEEEEECCC
Confidence 689999986553 33344444443333333321 346789999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH-------cCCCcEEEEECCcchhhh
Q psy2609 77 GICAQTQV-ALKQAWL-------EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~-------~~~p~ilv~NK~Dl~~~~ 109 (161)
........ ++..+.. .++|+++|+||+|+....
T Consensus 94 ~~s~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 134 (182)
T 1ky3_A 94 ASSFENIKSWRDEFLVHANVNSPETFPFVILGNKIDAEESK 134 (182)
T ss_dssp HHHHHTHHHHHHHHHHHHCCSCTTTCCEEEEEECTTSCGGG
T ss_pred hHHHHHHHHHHHHHHHHhcccCcCCCcEEEEEECCcccccc
Confidence 43322221 1122211 578999999999996443
No 71
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=99.49 E-value=6.3e-15 Score=108.69 Aligned_cols=102 Identities=16% Similarity=0.091 Sum_probs=69.3
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..+.++.+.....+.+. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 105 (191)
T 2a5j_A 31 GVGKSCLLLQFTDKRFQPVHDLTIGVEFGARMVNID-----GKQIKLQIWDTAGQESFRSITRSYYRGAAGALLVYDITR 105 (191)
T ss_dssp TSSHHHHHHHHHHSCCCC-----CCSSEEEEEEEET-----TEEEEEEEECCTTGGGTSCCCHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-----CEEEEEEEEECCCchhhhhhHHHHhccCCEEEEEEECCC
Confidence 689999985553 3344444444333444444 446899999999999998889999999999999999986
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+... ..++..+.. .++|+++|+||+|+...
T Consensus 106 ~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 141 (191)
T 2a5j_A 106 RETFNHLTSWLEDARQHSSSNMVIMLIGNKSDLESR 141 (191)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCCc
Confidence 432222 222223322 37899999999999653
No 72
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=99.49 E-value=3.8e-15 Score=106.79 Aligned_cols=102 Identities=19% Similarity=0.056 Sum_probs=70.5
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+........+.+. +...++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 16 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (170)
T 1z0j_A 16 GVGKSSIMWRFVEDSFDPNINPTIGASFMTKTVQYQ-----NELHKFLIWDTAGLERFRALAPMYYRGSAAAIIVYDITK 90 (170)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-----TEEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCceeEEEEEEEEEEC-----CeEEEEEEEcCCCchhhhcccHhhCcCCCEEEEEEECcC
Confidence 689999986654332 2333322222333343 446899999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
....... .++..+.. .++|+++|+||+|+...
T Consensus 91 ~~s~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~ 126 (170)
T 1z0j_A 91 EETFSTLKNWVRELRQHGPPSIVVAIAGNKCDLTDV 126 (170)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEECCccccc
Confidence 5433332 22233332 46788999999999754
No 73
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=99.49 E-value=4.4e-15 Score=115.90 Aligned_cols=132 Identities=14% Similarity=0.149 Sum_probs=87.8
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH----------HHHHHH--Hh
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS----------EVSTAV--RL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~----------~~~~~l--~~ 64 (161)
|+|||++++.+... ..+|+|++.....+.+. +..+.+|||||+.++.. .+..++ +.
T Consensus 11 n~GKSTL~n~L~g~~~~v~~~pg~Tv~~~~~~~~~~-------~~~~~lvDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~ 83 (256)
T 3iby_A 11 NCGKTTLFNALTNANQRVGNWPGVTVEKKTGEFLLG-------EHLIEITDLPGVYSLVANAEGISQDEQIAAQSVIDLE 83 (256)
T ss_dssp TSSHHHHHHHHHTTSEEEEECTTSSSEEEEEEEEET-------TEEEEEEECCCCSSCC------CHHHHHHHHHHHHSC
T ss_pred CCCHHHHHHHHHCCCCCccCCCCceEEEEEEEEEEC-------CeEEEEEeCCCcccccccccCCCHHHHHHHHHHhhCC
Confidence 79999998776544 34688887776767666 56999999999987653 455666 78
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhhhc-CChHHHHHhHHHHHHHHHhhhhhhchhhhhhh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMK-LSPLDIYVHLSQLLEQVNAVMGELFASQVMDE 143 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 143 (161)
+|++++|+|++. ......+..++...++|+++|+||+|+...... .........+. +..+++++....+.+.+.+
T Consensus 84 ~d~vi~VvDas~--~~~~~~l~~~l~~~~~pvilv~NK~Dl~~~~~~~~~~~~l~~~lg--~~vi~~SA~~g~gi~el~~ 159 (256)
T 3iby_A 84 YDCIINVIDACH--LERHLYLTSQLFELGKPVVVALNMMDIAEHRGISIDTEKLESLLG--CSVIPIQAHKNIGIPALQQ 159 (256)
T ss_dssp CSEEEEEEEGGG--HHHHHHHHHHHTTSCSCEEEEEECHHHHHHTTCEECHHHHHHHHC--SCEEECBGGGTBSHHHHHH
T ss_pred CCEEEEEeeCCC--chhHHHHHHHHHHcCCCEEEEEEChhcCCcCCcHHHHHHHHHHcC--CCEEEEECCCCCCHHHHHH
Confidence 999999999985 233344555666678999999999999765421 12111111111 1234556666666666555
Q ss_pred h
Q psy2609 144 T 144 (161)
Q Consensus 144 ~ 144 (161)
.
T Consensus 160 ~ 160 (256)
T 3iby_A 160 S 160 (256)
T ss_dssp H
T ss_pred H
Confidence 4
No 74
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=99.49 E-value=1.3e-14 Score=105.93 Aligned_cols=102 Identities=20% Similarity=0.100 Sum_probs=71.0
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. ++.+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 20 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 94 (186)
T 2bme_A 20 GTGKSCLLHQFIEKKFKDDSNHTIGVEFGSKIINVG-----GKYVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 94 (186)
T ss_dssp TSSHHHHHHHHHHSSCCTTCCCCSEEEEEEEEEEET-----TEEEEEEEEEECCSGGGHHHHHTTSTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-----CEEEEEEEEeCCCcHHHHHHHHHHHhcCCEEEEEEECcC
Confidence 689999986554 3334444444333334443 445799999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHH---HHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQA---WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~---~~~~~p~ilv~NK~Dl~~~ 108 (161)
..+..... ++..+ ...++|+++|+||+|+...
T Consensus 95 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 130 (186)
T 2bme_A 95 RETYNALTNWLTDARMLASQNIVIILCGNKKDLDAD 130 (186)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 43322222 22222 2357899999999999643
No 75
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=99.49 E-value=2.5e-14 Score=105.98 Aligned_cols=101 Identities=13% Similarity=0.031 Sum_probs=54.3
Q ss_pred ccccccccCCchhH-------HHcCCccccceEEEEeecCCCCCC--ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEE
Q psy2609 2 LCMVSSYMDSRKDE-------QERGITMKSSSISLYYKDNKDTPE--EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVV 72 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-------~~~giti~~~~~~~~~~~~~~~~~--~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVv 72 (161)
++|||++++.+... ..+.+..+.....+.+. +. .+.+.+|||||++++...+..+++.+|++++|+
T Consensus 30 ~~GKssli~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~ 104 (208)
T 2yc2_C 30 TVGKSALISMFTSKGSKFLKDYAMTSGVEVVVAPVTIP-----DTTVSVELFLLDTAGSDLYKEQISQYWNGVYYAILVF 104 (208)
T ss_dssp -------------------------------CEEEECT-----TSSEEEEEEEEETTTTHHHHHHHSTTCCCCCEEEEEE
T ss_pred CCCHHHHHHHHHhCCCcccCCCCCccceEEEEEEEEEC-----CcccEEEEEEEECCCcHHHHHHHHHHHhhCcEEEEEE
Confidence 68999999877544 22222223333344443 44 679999999999999999999999999999999
Q ss_pred eCCCCCChhHH-HHHHHHHH------cCCCcEEEEECCcchh
Q psy2609 73 DCVEGICAQTQ-VALKQAWL------EKIQPILVLNKIDRLI 107 (161)
Q Consensus 73 d~~~~~~~~~~-~~~~~~~~------~~~p~ilv~NK~Dl~~ 107 (161)
|+++..+.... .++..+.. .++|+++|+||+|+..
T Consensus 105 d~~~~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~ 146 (208)
T 2yc2_C 105 DVSSMESFESCKAWFELLKSARPDRERPLRAVLVANKTDLPP 146 (208)
T ss_dssp ETTCHHHHHHHHHHHHHHHHHCSCTTSCCEEEEEEECC----
T ss_pred ECCCHHHHHHHHHHHHHHHHhhcccccCCcEEEEEECcccch
Confidence 99865432222 22233332 4789999999999975
No 76
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.48 E-value=4e-15 Score=111.00 Aligned_cols=100 Identities=18% Similarity=0.085 Sum_probs=70.9
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. +..+++.||||||++++...+..+++.+|++++|+|+++
T Consensus 30 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 104 (213)
T 3cph_A 30 GVGKSCLLVRFVEDKFNPSFITTIGIDFKIKTVDIN-----GKKVKLQLWDTAGQERFRTITTAYYRGAMGIILVYDVTD 104 (213)
T ss_dssp TSSHHHHHHHHHHCCCCCSSSCCCSCCEEEEEEEET-----TEEEEEEEECCTTGGGGTCCCHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCcccCCcccceEEEEEEEEC-----CEEEEEEEEeCCCcHHHHHHHHHHhccCCEEEEEEECCC
Confidence 689999986554 3334455555444445554 445899999999999999889999999999999999986
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcch
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRL 106 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~ 106 (161)
...... ..++..+.. .++|+++|+||+|+.
T Consensus 105 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~ 138 (213)
T 3cph_A 105 ERTFTNIKQWFKTVNEHANDEAQLLLVGNKSDME 138 (213)
T ss_dssp HHHHHTHHHHHHHHHHHTTTCSEEEEEEECTTCS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCc
Confidence 432222 222222222 378999999999994
No 77
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=99.48 E-value=1.1e-14 Score=104.60 Aligned_cols=102 Identities=19% Similarity=0.072 Sum_probs=64.5
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. +..+.+.+|||||++++......+++.+|++++|+|+++
T Consensus 16 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 90 (170)
T 1z08_A 16 CVGKTSLVLRYCENKFNDKHITTLGASFLTKKLNIG-----GKRVNLAIWDTAGQERFHALGPIYYRDSNGAILVYDITD 90 (170)
T ss_dssp TSCHHHHHHHHHHCCCCSSCCCCCSCEEEEEEEESS-----SCEEEEEEEECCCC-------CCSSTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCcCCCCccceEEEEEEEEEC-----CEEEEEEEEECCCcHhhhhhHHHHhccCCEEEEEEECcC
Confidence 689999985554 3333444443333334443 557899999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHH---HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
..+..... ++..+. ..++|+++|+||+|+...
T Consensus 91 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 126 (170)
T 1z08_A 91 EDSFQKVKNWVKELRKMLGNEICLCIVGNKIDLEKE 126 (170)
T ss_dssp HHHHHHHHHHHHHHHHHHGGGSEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEECcccccc
Confidence 43322222 222222 257899999999999753
No 78
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=99.48 E-value=4.4e-14 Score=102.02 Aligned_cols=102 Identities=16% Similarity=0.109 Sum_probs=70.0
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.++.......+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 25 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 99 (179)
T 1z0f_A 25 GVGKSCLLHQFTEKKFMADCPHTIGVEFGTRIIEVS-----GQKIKLQIWDTAGQERFRAVTRSYYRGAAGALMVYDITR 99 (179)
T ss_dssp TSSHHHHHHHHHHSCCCSSCTTSCCCCEEEEEEEET-----TEEEEEEEEECTTGGGTCHHHHHHHHTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceEEEEEEEEEC-----CeEEEEEEEECCCChHhhhhHHHHhccCCEEEEEEeCcC
Confidence 689999986664332 2223222222333333 446799999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHH---HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
........ ++..+. ..++|+++|+||+|+...
T Consensus 100 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 135 (179)
T 1z0f_A 100 RSTYNHLSSWLTDARNLTNPNTVIILIGNKADLEAQ 135 (179)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECcccccc
Confidence 53322222 222222 257899999999999643
No 79
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=99.48 E-value=1.3e-15 Score=113.22 Aligned_cols=100 Identities=17% Similarity=0.078 Sum_probs=69.1
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..++++.+.....+.+. +..+.+.||||||++++...+..+++.+|++|+|+|+++
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (207)
T 1vg8_A 18 GVGKTSLMNQYVNKKFSNQYKATIGADFLTKEVMVD-----DRLVTMQIWDTAGQERFQSLGVAFYRGADCCVLVFDVTA 92 (207)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCCSEEEEEEEEESS-----SCEEEEEEEEECSSGGGSCSCCGGGTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCcccceEEEEEEEEC-----CEEEEEEEEeCCCcHHHHHhHHHHHhCCcEEEEEEECCC
Confidence 68999998666433 23344444333333333 456899999999999998888889999999999999986
Q ss_pred CCChhHHH-HHHHHH-H------cCCCcEEEEECCcch
Q psy2609 77 GICAQTQV-ALKQAW-L------EKIQPILVLNKIDRL 106 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~-~------~~~p~ilv~NK~Dl~ 106 (161)
........ +...+. . .++|+++|+||+|+.
T Consensus 93 ~~s~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~ 130 (207)
T 1vg8_A 93 PNTFKTLDSWRDEFLIQASPRDPENFPFVVLGNKIDLE 130 (207)
T ss_dssp HHHHHTHHHHHHHHHHHHCCSSGGGSCEEEEEECTTSS
T ss_pred HHHHHHHHHHHHHHHHhcccccCCCCcEEEEEECCCCc
Confidence 43322221 111111 1 478999999999996
No 80
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=99.48 E-value=3.1e-14 Score=105.66 Aligned_cols=101 Identities=16% Similarity=0.116 Sum_probs=69.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.++.......+.+. +..+++.||||||++++...+..+++.+|++|+|+|+++
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 92 (203)
T 1zbd_A 18 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTIYRN-----DKRIKLQIWDTAGLERYRTITTAYYRGAMGFILMYDITN 92 (203)
T ss_dssp TSSHHHHHHHHHTCCCCSCCCCCCSEEEEEEEEEET-----TEEEEEEEEEECCSGGGHHHHHTTGGGCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCcCCccceeEEEEEEEEC-----CeEEEEEEEECCCchhhcchHHHhhcCCCEEEEEEECcC
Confidence 689999986554322 2333322222333333 446899999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
....... .++..+.. .++|+++|+||+|+..
T Consensus 93 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (203)
T 1zbd_A 93 EESFNAVQDWSTQIKTYSWDNAQVLLVGNKCDMED 127 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSCEEEEEEECTTCTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccCc
Confidence 4332222 22233332 4789999999999965
No 81
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=99.48 E-value=9.6e-15 Score=106.48 Aligned_cols=100 Identities=20% Similarity=0.165 Sum_probs=67.6
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..+.++... ...+.+. +..+.+.+|||||++++......+++.+|++++|+|+++
T Consensus 28 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 101 (183)
T 3kkq_A 28 GVGKSALTIQFFQKIFVDDYDPTIEDSY-LKHTEID-----NQWAILDVLDTAGQEEFSAMREQYMRTGDGFLIVYSVTD 101 (183)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-----TEEEEEEEEECCSCGGGCSSHHHHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCcccee-EEEEEeC-----CcEEEEEEEECCCchhhHHHHHHHHhcCCEEEEEEECCC
Confidence 68999998766532 122222211 2222233 446778899999999999999999999999999999986
Q ss_pred CCChhH-----HHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 77 GICAQT-----QVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~-----~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
..+... ..+.......++|+++|+||+|+..
T Consensus 102 ~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 137 (183)
T 3kkq_A 102 KASFEHVDRFHQLILRVKDRESFPMILVANKVDLMH 137 (183)
T ss_dssp HHHHHTHHHHHHHHHHHHTSSCCCEEEEEECTTCST
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCcEEEEEECCCchh
Confidence 432211 2222222336789999999999865
No 82
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=99.48 E-value=1e-14 Score=107.34 Aligned_cols=99 Identities=13% Similarity=0.068 Sum_probs=69.7
Q ss_pred ccccccccCCchhHH----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+.... ....|+......+.+. +.++.+|||||++++...+..+++.+|++++|+|+++.
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~ 103 (190)
T 2h57_A 31 NSGKTTIINKLKPSNAQSQNILPTIGFSIEKFKSS-------SLSFTVFDMSGQGRYRNLWEHYYKEGQAIIFVIDSSDR 103 (190)
T ss_dssp TSSHHHHHHHTSCGGGCCSSCCCCSSEEEEEEECS-------SCEEEEEEECCSTTTGGGGGGGGGGCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHhcCCCCCCCcCCccceeEEEEEEC-------CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 689999987765433 2334444333334333 57999999999999999999999999999999999864
Q ss_pred CChhH-HHHH-HHHHH-----cCCCcEEEEECCcchh
Q psy2609 78 ICAQT-QVAL-KQAWL-----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~~~~-~~~~~-----~~~p~ilv~NK~Dl~~ 107 (161)
.+... ...+ ..... .++|+++|+||+|+..
T Consensus 104 ~s~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 140 (190)
T 2h57_A 104 LRMVVAKEELDTLLNHPDIKHRRIPILFFANKMDLRD 140 (190)
T ss_dssp HHHHHHHHHHHHHHHSTTTTTSCCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHHHhChhhccCCCeEEEEEeCcCccc
Confidence 32222 1222 22222 4789999999999965
No 83
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=99.48 E-value=9.4e-15 Score=105.00 Aligned_cols=100 Identities=14% Similarity=-0.012 Sum_probs=70.1
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+.... ...-|+......+.+. ..++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 17 ~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 89 (171)
T 1upt_A 17 GAGKTTILYRLQVGEVVTTIPTIGFNVETVTYK-------NLKFQVWDLGGLTSIRPYWRCYYSNTDAVIYVVDSCDRDR 89 (171)
T ss_dssp TSSHHHHHHHHHHSSCCCCCCCSSEEEEEEEET-------TEEEEEEEECCCGGGGGGGGGGCTTCSEEEEEEETTCCTT
T ss_pred CCCHHHHHHHHhcCCCCCcCCcCccceEEEEEC-------CEEEEEEECCCChhhhHHHHHHhccCCEEEEEEECCCHHH
Confidence 689999987764322 1222333333344444 7899999999999999889999999999999999987644
Q ss_pred hhH--HHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 80 AQT--QVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~--~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
... ..+...+.. .++|+++|+||+|+...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 123 (171)
T 1upt_A 90 IGISKSELVAMLEEEELRKAILVVFANKQDMEQA 123 (171)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHhchhhCCCEEEEEEECCCCcCC
Confidence 322 222222222 57899999999999753
No 84
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=99.48 E-value=9.8e-14 Score=101.62 Aligned_cols=97 Identities=18% Similarity=0.166 Sum_probs=72.4
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCC----------chhhHHHHHHHHHhc
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPG----------HVDFSSEVSTAVRLC 65 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG----------~~~~~~~~~~~l~~~ 65 (161)
++|||++++.+.... ..|.|.. ..+... +.++.+||||| ++.+...+..+++.+
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~t~~---~~~~~~-------~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (195)
T 3pqc_A 33 NVGKSSLLNALFNRKIAFVSKTPGKTRS---INFYLV-------NSKYYFVDLPGYGYAKVSKKERMLWKRLVEDYFKNR 102 (195)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSCCCCCC---EEEEEE-------TTTEEEEECCCBSSSCCCHHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHcCccccccCCCCCccC---eEEEEE-------CCcEEEEECCCCccccCChhhHHHHHHHHHHHHhcC
Confidence 689999987665432 1222322 122222 34788999999 667778888888887
Q ss_pred ---CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 66 ---DGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 66 ---d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
|++++|+|++.+.......++.++...++|+++|+||+|+...
T Consensus 103 ~~~~~vi~v~d~~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~~ 148 (195)
T 3pqc_A 103 WSLQMVFLLVDGRIPPQDSDLMMVEWMKSLNIPFTIVLTKMDKVKM 148 (195)
T ss_dssp TTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCG
T ss_pred cCceEEEEEecCCCCCCHHHHHHHHHHHHcCCCEEEEEEChhcCCh
Confidence 8999999999887777777777787789999999999999754
No 85
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=99.48 E-value=4.8e-14 Score=103.78 Aligned_cols=100 Identities=17% Similarity=0.057 Sum_probs=69.5
Q ss_pred ccccccccCCchhHHH---cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE---RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~---~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~ 78 (161)
++|||++++.+....- ..-|+......+.+ ..+++.+|||||++++...+..+++.+|++++|+|+++..
T Consensus 32 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~-------~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~ 104 (188)
T 1zd9_A 32 YSGKTTFVNVIASGQFNEDMIPTVGFNMRKITK-------GNVTIKLWDIGGQPRFRSMWERYCRGVSAIVYMVDAADQE 104 (188)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEE-------TTEEEEEEEECCSHHHHTTHHHHHTTCSEEEEEEETTCGG
T ss_pred CCCHHHHHHHHHcCCCCCccCCCCceeEEEEEe-------CCEEEEEEECCCCHhHHHHHHHHHccCCEEEEEEECCCHH
Confidence 6899999876653321 12233333333333 3789999999999999999999999999999999998643
Q ss_pred ChhHH-HHH-HHHH---HcCCCcEEEEECCcchhh
Q psy2609 79 CAQTQ-VAL-KQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 79 ~~~~~-~~~-~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
..... ..+ .... ..++|+++|+||+|+...
T Consensus 105 s~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 139 (188)
T 1zd9_A 105 KIEASKNELHNLLDKPQLQGIPVLVLGNKRDLPGA 139 (188)
T ss_dssp GHHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHHhCcccCCCCEEEEEECCCCccC
Confidence 32221 222 2222 257999999999999753
No 86
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=99.47 E-value=2.5e-14 Score=102.02 Aligned_cols=102 Identities=20% Similarity=0.060 Sum_probs=65.2
Q ss_pred ccccccccCCchhHHHc---CCccc-cceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER---GITMK-SSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~---giti~-~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+....-. .-|.. .....+.+. ++.+++.+|||||++++...+..+++.+|++++|+|+++.
T Consensus 14 ~~GKssl~~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 88 (168)
T 1u8z_A 14 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD-----GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 88 (168)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEET-----TEEEEEEEEECCC---CHHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHHhCccCCCCCCCcceEEEEEEEEC-----CEEEEEEEEECCCcchhHHHHHHHhhcCCEEEEEEECCCH
Confidence 68999998766543211 11111 111222333 4467899999999999999999999999999999999854
Q ss_pred CChhHH-HHHHHHH----HcCCCcEEEEECCcchhh
Q psy2609 78 ICAQTQ-VALKQAW----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.... .++..+. ..++|+++|+||+|+...
T Consensus 89 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 124 (168)
T 1u8z_A 89 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 124 (168)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTSCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEECcccccc
Confidence 322221 1112222 237999999999999754
No 87
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=99.47 E-value=2.8e-14 Score=107.56 Aligned_cols=102 Identities=14% Similarity=0.100 Sum_probs=70.1
Q ss_pred ccccccccCCchhHHHcC---Ccc--ccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQERG---ITM--KSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~g---iti--~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+....... -|+ ......+... +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 25 ~~GKSsli~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 99 (221)
T 3gj0_A 25 GTGKTTFVKRHLTGEFEKKYVATLGVEVHPLVFHTN-----RGPIKFNVWDTAGQEKFGGLRDGYYIQAQCAIIMFDVTS 99 (221)
T ss_dssp TSSHHHHHTTBHHHHHTCEEETTTTEEEEEEEEEET-----TEEEEEEEEEECSGGGTSCCCHHHHTTCCEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEeCCChHHHhHHHHHHHhcCCEEEEEEECCC
Confidence 689999999965443221 122 2222222222 447899999999999999889999999999999999986
Q ss_pred CCChhHHHHH-HHHHH--cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQVAL-KQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~~~-~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
..+......| ..+.. .++|+++|+||+|+...
T Consensus 100 ~~s~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 134 (221)
T 3gj0_A 100 RVTYKNVPNWHRDLVRVCENIPIVLCGNKVDIKDR 134 (221)
T ss_dssp HHHHHTHHHHHHHHHHHSTTCCEEEEEECTTSSSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCEEEEEECCccccc
Confidence 4433222222 22222 38899999999999653
No 88
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=2.4e-14 Score=105.72 Aligned_cols=101 Identities=19% Similarity=0.010 Sum_probs=69.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+........+.+. +..+++.||||||++++...+..+++.+|++++|+|+++
T Consensus 33 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilV~d~~~ 107 (192)
T 2fg5_A 33 GVGKSSIVCRFVQDHFDHNISPTIGASFMTKTVPCG-----NELHKFLIWDTAGQERFHSLAPMYYRGSAAAVIVYDITK 107 (192)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCCSSEEEEEEEEECS-----SSEEEEEEEEECCSGGGGGGTHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCcCCCcceeEEEEEEEeC-----CEEEEEEEEcCCCchhhHhhhHHhhccCCEEEEEEeCCC
Confidence 689999987764332 2222222222223333 457899999999999999999999999999999999986
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
........ ++..+.. .++|+++|+||+|+..
T Consensus 108 ~~s~~~~~~~~~~i~~~~~~~~piiiv~NK~Dl~~ 142 (192)
T 2fg5_A 108 QDSFYTLKKWVKELKEHGPENIVMAIAGNKCDLSD 142 (192)
T ss_dssp THHHHHHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcEEEEEECccccc
Confidence 54333322 2222322 3789999999999964
No 89
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=99.47 E-value=9.8e-16 Score=122.14 Aligned_cols=98 Identities=17% Similarity=0.161 Sum_probs=71.9
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCch-hh--------HHHHHHHHHhcC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV-DF--------SSEVSTAVRLCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~-~~--------~~~~~~~l~~~d 66 (161)
|||||++++.+..+. .++.|.......+.+. ..+++||||||++ +. ...+..+++.+|
T Consensus 18 nvGKSTLln~L~g~~~~i~s~~~~tTr~~~~gi~~~~-------~~~i~~iDTpG~~~~~~~~l~~~~~~~~~~~l~~~D 90 (301)
T 1ega_A 18 NVGKSTLLNKLLGQKISITSRKAQTTRHRIVGIHTEG-------AYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVE 90 (301)
T ss_dssp SSSHHHHHHHHHTCSEEECCCCSSCCSSCEEEEEEET-------TEEEEEESSSSCCHHHHHHHHHHHTCCTTSCCCCEE
T ss_pred CCCHHHHHHHHHCCCccccCCCCCcceeeEEEEEEEC-------CeeEEEEECcCCCccchhhHHHHHHHHHHHHHhcCC
Confidence 799999988776543 2334433222222232 6799999999997 32 223456677899
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++++|+|++. +...+..+++.+...+.|+++|+||+|+..
T Consensus 91 ~vl~Vvd~~~-~~~~~~~i~~~l~~~~~P~ilvlNK~D~~~ 130 (301)
T 1ega_A 91 LVIFVVEGTR-WTPDDEMVLNKLREGKAPVILAVNKVDNVQ 130 (301)
T ss_dssp EEEEEEETTC-CCHHHHHHHHHHHSSSSCEEEEEESTTTCC
T ss_pred EEEEEEeCCC-CCHHHHHHHHHHHhcCCCEEEEEECcccCc
Confidence 9999999987 888888887777767899999999999975
No 90
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.47 E-value=2e-14 Score=103.01 Aligned_cols=102 Identities=16% Similarity=0.041 Sum_probs=67.2
Q ss_pred ccccccccCCchhHHH---cCCccccceEE-EEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE---RGITMKSSSIS-LYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~---~giti~~~~~~-~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+....- ...|+...... +... +..+.+.+|||||++++...+..+++.+|++++|+|+++.
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (172)
T 2erx_A 13 GVGKSSLVLRFVKGTFRESYIPTVEDTYRQVISCD-----KSICTLQITDTTGSHQFPAMQRLSISKGHAFILVYSITSR 87 (172)
T ss_dssp TSSHHHHHHHHHTCCCCSSCCCCSCEEEEEEEEET-----TEEEEEEEEECCSCSSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccEEEEEEEC-----CEEEEEEEEECCCchhhHHHHHHhcccCCEEEEEEECcCH
Confidence 6899999866643221 11122211111 1122 4467899999999999999999999999999999999853
Q ss_pred CChhH-HHHHHHHHH-----cCCCcEEEEECCcchhh
Q psy2609 78 ICAQT-QVALKQAWL-----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~-~~~~~~~~~-----~~~p~ilv~NK~Dl~~~ 108 (161)
..... ..++..+.. .++|+++|+||+|+...
T Consensus 88 ~~~~~~~~~~~~i~~~~~~~~~~pii~v~nK~Dl~~~ 124 (172)
T 2erx_A 88 QSLEELKPIYEQICEIKGDVESIPIMLVGNKCDESPS 124 (172)
T ss_dssp HHHHTTHHHHHHHHHHHC---CCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCCEEEEEEccccccc
Confidence 32211 222222222 37899999999999754
No 91
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=99.47 E-value=4.7e-14 Score=102.89 Aligned_cols=99 Identities=15% Similarity=0.103 Sum_probs=68.9
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh----H----HHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF----S----SEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~----~----~~~~~~l~~~d~ 67 (161)
++|||++++.+..+. .+|.|.+.....+.+. +..+.+|||||++++ . .....+++.+|+
T Consensus 14 g~GKStLl~~l~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~ad~ 86 (172)
T 2gj8_A 14 NAGKSSLLNALAGREAAIVTDIAGTTRDVLREHIHID-------GMPLHIIDTAGLREASDEVERIGIERAWQEIEQADR 86 (172)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSTTCCCSCEEEEEEET-------TEEEEEEECCCCSCCSSHHHHHHHHHHHHHHHTCSE
T ss_pred CCCHHHHHHHHhCCCcceeeCCCCceeceeeEEEEEC-------CeEEEEEECCCcccchhHHHHHHHHHHHHHHHhCCE
Confidence 689999987765432 2455655444455554 567999999998652 1 123457899999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
+++|+|+++..+.....++..+.. .++|+++|+||+|+..
T Consensus 87 ~i~v~D~~~~~s~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 129 (172)
T 2gj8_A 87 VLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITG 129 (172)
T ss_dssp EEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhcccCCCEEEEEECccCCc
Confidence 999999987665544444444433 2689999999999964
No 92
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=99.47 E-value=7.4e-15 Score=115.48 Aligned_cols=99 Identities=17% Similarity=0.130 Sum_probs=72.4
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH----------HHHHHHH--Hh
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS----------SEVSTAV--RL 64 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~----------~~~~~~l--~~ 64 (161)
|||||++++.+... ..+|+|++.....+.+. +..+.+|||||+.++. ..+..++ +.
T Consensus 13 n~GKSTLin~l~g~~~~v~~~~g~t~~~~~~~~~~~-------~~~~~liDtpG~~~~~~~~~~~~~~e~i~~~~~~~~~ 85 (274)
T 3i8s_A 13 NSGKTTLFNQLTGSRQRVGNWAGVTVERKEGQFSTT-------DHQVTLVDLPGTYSLTTISSQTSLDEQIACHYILSGD 85 (274)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSSSEEEEEEEECS-------SCEEEEEECCCCSCSCC----CCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeeEEEEEEEEEeC-------CCceEEEECcCCCccccccccCCHHHHHHHHHHhhcC
Confidence 79999998777543 34588887666666655 5689999999987754 2233333 68
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+|++++|+|++. ......+..++...++|+++|+||+|+....
T Consensus 86 ~d~ii~VvD~~~--~~~~~~~~~~l~~~~~p~ivv~NK~Dl~~~~ 128 (274)
T 3i8s_A 86 ADLLINVVDASN--LERNLYLTLQLLELGIPCIVALNMLDIAEKQ 128 (274)
T ss_dssp CSEEEEEEEGGG--HHHHHHHHHHHHHHTCCEEEEEECHHHHHHT
T ss_pred CCEEEEEecCCC--hHHHHHHHHHHHhcCCCEEEEEECccchhhh
Confidence 999999999985 2233444555666799999999999997643
No 93
>3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens}
Probab=99.47 E-value=5.7e-15 Score=109.71 Aligned_cols=102 Identities=18% Similarity=0.112 Sum_probs=70.0
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. +..+.+.||||||++++...+..+++.+|++++|+|+++
T Consensus 43 ~~GKSsli~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 117 (199)
T 3l0i_B 43 GVGKSCLLLRFADDTYTESYISTIGVDFKIRTIELD-----GKTIKLQIWDTAGQERFRTITSSYYRGAHGIIVVYDVTD 117 (199)
T ss_dssp TSCCTTTTTSSBCCCCCCHHHHHHCCSEEEEEEEET-----TEEEEEEEECCTTCTTCCCCSCC--CCCSEEEECC-CCC
T ss_pred CCCHHHHHHHHhcCCCCCCcCCcccceEEEEEEEEC-----CEEEEEEEEECCCcHhHHHHHHHHhhcCCEEEEEEECCC
Confidence 689999987664 4455566655555555555 446889999999999998888899999999999999987
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
..+..... ++..+.. .++|+++|+||+|+...
T Consensus 118 ~~s~~~~~~~~~~i~~~~~~~~p~ilv~nK~Dl~~~ 153 (199)
T 3l0i_B 118 QESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTTK 153 (199)
T ss_dssp SHHHHHHHHHHHHHHSCC-CCSEEEEC-CCSSCC--
T ss_pred HHHHHHHHHHHHHHHHhccCCCCEEEEEECccCCcc
Confidence 54333322 2222222 37899999999999754
No 94
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=99.20 E-value=4.3e-15 Score=110.65 Aligned_cols=101 Identities=14% Similarity=0.042 Sum_probs=68.8
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..+.+ .+.....+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 40 ~~GKSsli~~l~~~~~~~~~~~t~-~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~ 113 (204)
T 3th5_A 40 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVD-----GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVFLICFSLVS 113 (204)
Confidence 68999999665432 22211 11111222222 446788899999999999999999999999999999986
Q ss_pred CCChhHH--HHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .+...+... ++|+++|+||+|+...
T Consensus 114 ~~s~~~~~~~~~~~l~~~~~~~piilv~NK~Dl~~~ 149 (204)
T 3th5_A 114 PASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
Confidence 5443332 222333322 7899999999999753
No 95
>3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A*
Probab=99.46 E-value=4.1e-14 Score=112.88 Aligned_cols=100 Identities=18% Similarity=0.137 Sum_probs=74.6
Q ss_pred ccccccccCCch------hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh-----HHHHHHHHHhcCEEEE
Q psy2609 2 LCMVSSYMDSRK------DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF-----SSEVSTAVRLCDGTII 70 (161)
Q Consensus 2 ~~g~~~~~D~~~------~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~-----~~~~~~~l~~~d~~il 70 (161)
++|||+++..+- ....+|.|++.....+.+. + .+++.+|||||+++| ...+..+++.+|++|+
T Consensus 13 ~vGKSSLi~~l~~~~~~~~~~~~~~Ti~~~~~~~~~~-----~-~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~~ad~vi~ 86 (307)
T 3r7w_A 13 GSGKSSMRSIIFSNYSAFDTRRLGATIDVEHSHLRFL-----G-NMTLNLWDCGGQDVFMENYFTKQKDHIFQMVQVLIH 86 (307)
T ss_dssp TSSHHHHHHHHHSCCCTGGGGGCCCCCSEEEEEEEET-----T-TEEEEEEEECCSHHHHHHHHTTTHHHHHTTCSEEEE
T ss_pred CCCHHHHHHHHHhCCCCccccCcCCccceEEEEEEeC-----C-ceEEEEEECCCcHHHhhhhhhhHHHHHhccCCEEEE
Confidence 689999875532 2246788888777666653 2 789999999999998 5668888999999999
Q ss_pred EEeCCCCCChhHHHHH-HHH---H--HcCCCcEEEEECCcchh
Q psy2609 71 VVDCVEGICAQTQVAL-KQA---W--LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 71 Vvd~~~~~~~~~~~~~-~~~---~--~~~~p~ilv~NK~Dl~~ 107 (161)
|+|+++..+......| .++ . ..++|+++|+||+|+..
T Consensus 87 V~D~t~~~s~~~l~~~~~~l~~l~~~~~~~piilv~NK~Dl~~ 129 (307)
T 3r7w_A 87 VFDVESTEVLKDIEIFAKALKQLRKYSPDAKIFVLLHKMDLVQ 129 (307)
T ss_dssp EEETTCSCHHHHHHHHHHHHHHHHHHCTTCEEEEEEECGGGSC
T ss_pred EEECCChhhHHHHHHHHHHHHHHHHhCCCCeEEEEEecccccc
Confidence 9999976554443322 112 1 13799999999999975
No 96
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=99.46 E-value=6.4e-15 Score=105.55 Aligned_cols=99 Identities=17% Similarity=-0.006 Sum_probs=52.3
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||++++.+.... ..|.+.. ..+.+. +..+.+.+|||||++++......+++.+|++++|+|++
T Consensus 12 ~~GKSsli~~l~~~~~~~~~~~~~~~~~---~~~~~~-----~~~~~~~i~D~~g~~~~~~~~~~~~~~~~~~i~v~d~~ 83 (166)
T 3q72_A 12 GVGKSALARIFGGVEDGPEAEAAGHTYD---RSIVVD-----GEEASLMVYDIWEQDGGRWLPGHCMAMGDAYVIVYSVT 83 (166)
T ss_dssp TSSHHHHHHHHCCC----------CEEE---EEEEET-----TEEEEEEEEECC---------------CCEEEEEEETT
T ss_pred CCCHHHHHHHHcCccccCCCCccccceE---EEEEEC-----CEEEEEEEEECCCCccchhhhhhhhhhCCEEEEEEECC
Confidence 689999986653211 1222221 223333 55789999999999999999999999999999999998
Q ss_pred CCCChhHH-HHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 76 EGICAQTQ-VALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 76 ~~~~~~~~-~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
+..+.... .++..+.. .++|+++|+||+|+...
T Consensus 84 ~~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 121 (166)
T 3q72_A 84 DKGSFEKASELRVQLRRARQTDDVPIILVGNKSDLVRS 121 (166)
T ss_dssp CHHHHHHHHHHHHHHHHCC---CCCEEEEEECTTCCSS
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEEeccccccc
Confidence 54322221 22222222 47899999999999753
No 97
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=99.46 E-value=9.4e-15 Score=107.88 Aligned_cols=101 Identities=13% Similarity=0.078 Sum_probs=68.7
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+.... ...+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 33 ~~GKSsl~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 106 (194)
T 3reg_A 33 AVGKTCLLLAFSKGEIPTAYVPTVFENF-SHVMKYK-----NEEFILHLWDTAGQEEYDRLRPLSYADSDVVLLCFAVNN 106 (194)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEET-----TEEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCccCCeeeeee-EEEEEEC-----CEEEEEEEEECCCcHHHHHHhHhhccCCcEEEEEEECCC
Confidence 689999987665432 22222111 1122223 456789999999999999999999999999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .+...+.. .++|+++|+||+|+...
T Consensus 107 ~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 142 (194)
T 3reg_A 107 RTSFDNISTKWEPEIKHYIDTAKTVLVGLKVDLRKD 142 (194)
T ss_dssp HHHHHHHHHTHHHHHHHHCTTSEEEEEEECGGGCCT
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccC
Confidence 5433331 22223332 37899999999999753
No 98
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=99.46 E-value=1.4e-14 Score=104.84 Aligned_cols=101 Identities=13% Similarity=0.033 Sum_probs=67.6
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+.... ...+.+. +..+.+.+|||||++++......+++.+|++++|+|+++
T Consensus 19 ~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~~~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 92 (181)
T 2fn4_A 19 GVGKSALTIQFIQSYFVSDYDPTIEDSY-TKICSVD-----GIPARLDILDTAGQEEFGAMREQYMRAGHGFLLVFAIND 92 (181)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCTTCCEEE-EEEEEET-----TEEEEEEEEECCCTTTTSCCHHHHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCcCccccCCCcCceE-EEEEEEC-----CEEEEEEEEECCCchhhHHHHHHHHhhCCEEEEEEeCCC
Confidence 689999986664332 11221111 1223333 445789999999999998889999999999999999986
Q ss_pred CCChhHH-HHH----HHHHHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VAL----KQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~----~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
....... .++ ......++|+++|+||+|+...
T Consensus 93 ~~s~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 129 (181)
T 2fn4_A 93 RQSFNEVGKLFTQILRVKDRDDFPVVLVGNKADLESQ 129 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 4322211 111 2222347899999999999753
No 99
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=99.46 E-value=6.5e-14 Score=102.28 Aligned_cols=69 Identities=20% Similarity=0.144 Sum_probs=54.1
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhH-HHHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQT-QVALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
.+.+.+|||||++++...+..+++.+|++++|+|++...+... ..++..+.. .++|+++|+||+|+...
T Consensus 69 ~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 142 (195)
T 3bc1_A 69 RIHLQLWDTAGLERFRSLTTAFFRDAMGFLLLFDLTNEQSFLNVRNWISQLQMHAYSENPDIVLCGNKSDLEDQ 142 (195)
T ss_dssp EEEEEEEEECCSGGGHHHHHHTTTTCSEEEEEEETTCHHHHHTHHHHHHHHHHHSSSSSCCEEEEEECTTCGGG
T ss_pred EEEEEEEeCCCcHHHHHHHHHHHcCCCEEEEEEECCCHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 5799999999999999999999999999999999986443322 222222222 57899999999999753
No 100
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=99.46 E-value=3.3e-14 Score=119.04 Aligned_cols=100 Identities=24% Similarity=0.267 Sum_probs=74.2
Q ss_pred ccccccccCCch------hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCC--------chhhHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRK------DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPG--------HVDFSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~------~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG--------~~~~~~~~~~~l~~~d~ 67 (161)
|+|||++++.+. .+..+|+|.+.....+.+. +..+.+||||| ++++...+..+++.+|+
T Consensus 33 nvGKSTL~n~l~~~~~~~v~~~~g~t~~~~~~~~~~~-------~~~~~liDT~G~~~~~~~~~~~~~~~~~~~~~~ad~ 105 (456)
T 4dcu_A 33 NVGKSTIFNRIAGERISIVEDTPGVTRDRIYSSAEWL-------NYDFNLIDTGGIDIGDEPFLAQIRQQAEIAMDEADV 105 (456)
T ss_dssp SSSHHHHHHHHEEEEEC-----------CEEEECTTC-------SSCCEEECCCC------CCHHHHHHHHHHHHHHCSE
T ss_pred CCcHHHHHHHHhCCCCcccCCCCCcceeEEEEEEEEC-------CceEEEEECCCCCCcchHHHHHHHHHHHhhHhhCCE
Confidence 789999986654 3345678877665555544 67899999999 77888999999999999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|+|+..++...+.+++..+...++|+++|+||+|+...
T Consensus 106 il~VvD~~~~~~~~d~~l~~~l~~~~~pvilV~NK~D~~~~ 146 (456)
T 4dcu_A 106 IIFMVNGREGVTAADEEVAKILYRTKKPVVLAVNKLDNTEM 146 (456)
T ss_dssp EEEEEESSSCSCHHHHHHHHHHTTCCSCEEEEEECC-----
T ss_pred EEEEEeCCCCCChHHHHHHHHHHHcCCCEEEEEECccchhh
Confidence 99999999999998888888888889999999999998643
No 101
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=99.46 E-value=1.2e-14 Score=106.07 Aligned_cols=101 Identities=17% Similarity=0.086 Sum_probs=65.0
Q ss_pred ccccccccCCchhHHH----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+....- .+.+.......+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++.
T Consensus 14 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 88 (189)
T 4dsu_A 14 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-----GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 88 (189)
T ss_dssp TSSHHHHHHHHHHSSCCCCCCTTCCEEEEEEEEET-----TEEEEEEEEECCCC---CTTHHHHHHHCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHHhCCCCCCCCCCchheEEEEEEEC-----CcEEEEEEEECCCcHHHHHHHHHHHhcCCEEEEEEECCCH
Confidence 6899999877653321 111111112222333 4467799999999999999999999999999999999864
Q ss_pred CChhHHH-HHHHHH----HcCCCcEEEEECCcchh
Q psy2609 78 ICAQTQV-ALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~~-~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
.+..... ++..+. ..++|+++|+||+|+..
T Consensus 89 ~s~~~~~~~~~~~~~~~~~~~~p~i~v~nK~Dl~~ 123 (189)
T 4dsu_A 89 KSFEDIHHYREQIKRVKDSEDVPMVLVGNKCDLPS 123 (189)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTSSS
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEECccCcc
Confidence 3222221 222222 24799999999999974
No 102
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=99.45 E-value=2.5e-14 Score=104.98 Aligned_cols=99 Identities=16% Similarity=0.068 Sum_probs=66.0
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+.... ...-|+......+.+. ++++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 26 ~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 98 (187)
T 1zj6_A 26 NAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN-------NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 98 (187)
T ss_dssp TSSHHHHHHHHHTTSCEEEECCSCSSCEEEEET-------TEEEEEEECCC----CGGGHHHHTTCCEEEEEEETTCTTT
T ss_pred CCCHHHHHHHHhcCCCCcCcCCCccceEEEEEC-------CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEeCCCHHH
Confidence 689999986664322 1122333333444444 6899999999999998889999999999999999987643
Q ss_pred hhHH-HHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 80 AQTQ-VALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
.... ..+..+. ..++|+++|+||+|+..
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 131 (187)
T 1zj6_A 99 ISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 131 (187)
T ss_dssp HHHHHHHHHHHHTSGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHhchhhCCCeEEEEEECCCCcC
Confidence 3332 2222222 25799999999999975
No 103
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=99.45 E-value=7.2e-15 Score=108.08 Aligned_cols=102 Identities=17% Similarity=0.124 Sum_probs=69.9
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.++.......+.+. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 32 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 106 (189)
T 2gf9_A 32 SVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRH-----DKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIAN 106 (189)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCCCEEEEEEEEET-----TEEEEEEEEECCSCCSSCCSGGGGGTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCcCCceeEEEEEEEEEEC-----CeEEEEEEEeCCCcHHHhhhHHHhccCCCEEEEEEECCC
Confidence 689999986654332 2333332222333333 446899999999999998888999999999999999986
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
...... ..++..+.. .++|+++|+||+|+...
T Consensus 107 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~~ 142 (189)
T 2gf9_A 107 QESFAAVQDWATQIKTYSWDNAQVILVGNKCDLEDE 142 (189)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECcccccc
Confidence 432222 222333333 37899999999999753
No 104
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=99.45 E-value=1.6e-14 Score=108.03 Aligned_cols=101 Identities=14% Similarity=0.050 Sum_probs=70.7
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++ +.+..+..+.+ .+.....+.+. +..+.+.||||||+++|......+++.+|++++|+|+++
T Consensus 40 ~~GKSsLi~~l~~~~~~~~~~~t~-~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 113 (204)
T 4gzl_A 40 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVD-----GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS 113 (204)
T ss_dssp TSSHHHHHHHHHHSCCCC-CCCCS-EEEEEEEEECC------CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCCCcCCee-cceeEEEEEEC-----CEEEEEEEEECCCchhhHHHHHHHhccCCEEEEEEECCC
Confidence 68999999 55554444333 22222233333 557888899999999999999999999999999999986
Q ss_pred CCChhHH--HHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .+...+... ++|+++|+||+|+...
T Consensus 114 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 149 (204)
T 4gzl_A 114 PASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 149 (204)
T ss_dssp HHHHHHHHHTHHHHHHHHCSSCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhccc
Confidence 5443332 233333333 8999999999999754
No 105
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=99.45 E-value=8.3e-14 Score=99.47 Aligned_cols=101 Identities=16% Similarity=0.061 Sum_probs=67.6
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+.... ...+.+. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 13 ~~GKssli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~l~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 86 (167)
T 1c1y_A 13 GVGKSALTVQFVQGIFVEKYDPTIEDSY-RKQVEVD-----CQQCMLEILDTAGTEQFTAMRDLYMKNGQGFALVYSITA 86 (167)
T ss_dssp TSSHHHHHHHHHHCCCCCSCCCCSEEEE-EEEEESS-----SCEEEEEEEEECSSCSSTTHHHHHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccceE-EEEEEEC-----CEEEEEEEEECCChHHHHHHHHHHhccCCEEEEEEECCC
Confidence 689999986664322 22221111 1112222 557889999999999999999999999999999999985
Q ss_pred CCChhH-HHHHHHHH----HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAW----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~----~~~~p~ilv~NK~Dl~~~ 108 (161)
..+... ..++..+. ..++|+++|+||+|+...
T Consensus 87 ~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 123 (167)
T 1c1y_A 87 QSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDE 123 (167)
T ss_dssp HHHHHTHHHHHHHHHHHHCCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHHhhCcCCCcEEEEEECcccccc
Confidence 322111 11222222 248999999999999753
No 106
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=99.45 E-value=9.4e-14 Score=103.32 Aligned_cols=101 Identities=16% Similarity=0.039 Sum_probs=70.1
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH-HHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS-EVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~-~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||+++..+. ....++++.+.....+.+. +..+++.+|||||++++.. ....+++.+|++|+|+|++
T Consensus 33 ~vGKSsLi~~l~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~i~Dt~g~~~~~~~~~~~~~~~~d~~ilv~d~~ 107 (195)
T 3cbq_A 33 GVGKSTLAGTFGGLQGDSAHEPENPEDTYERRIMVD-----KEEVTLVVYDIWEQGDAGGWLRDHCLQTGDAFLIVFSVT 107 (195)
T ss_dssp TSSHHHHHHHTCCEECCGGGTTTSCTTEEEEEEEET-----TEEEEEEEECCCCCSGGGHHHHHHHHHHCSEEEEEEETT
T ss_pred CCCHHHHHHHHHhccCCccCCCCcccceEEEEEEEC-----CEEEEEEEEecCCCccchhhhHHHhhccCCEEEEEEECC
Confidence 689999986662 2234455555444445554 5578999999999988765 6778899999999999998
Q ss_pred CCCChhH-HHHHHHHHH----cCCCcEEEEECCcchh
Q psy2609 76 EGICAQT-QVALKQAWL----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 76 ~~~~~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~ 107 (161)
+..+... ..++..+.. .++|+++|+||+|+..
T Consensus 108 ~~~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 144 (195)
T 3cbq_A 108 DRRSFSKVPETLLRLRAGRPHHDLPVILVGNKSDLAR 144 (195)
T ss_dssp CHHHHHTHHHHHHHHHHHSTTSCCCEEEEEECTTCTT
T ss_pred CHHHHHHHHHHHHHHHHhcCCCCCCEEEEeechhccc
Confidence 5332221 122222222 3799999999999965
No 107
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=99.45 E-value=3.5e-14 Score=106.54 Aligned_cols=107 Identities=15% Similarity=0.093 Sum_probs=68.9
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCC-----CCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEE
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKD-----TPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIV 71 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~-----~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilV 71 (161)
++|||++++.+... ..++++.+.....+.+....+ ....+++.||||||+++|...+..+++.+|++|+|
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~iilV 114 (217)
T 2f7s_A 35 GVGKTTFLYRYTDNKFNPKFITTVGIDFREKRVVYNAQGPNGSSGKAFKVHLQLWDTAGQERFRSLTTAFFRDAMGFLLM 114 (217)
T ss_dssp TSSHHHHHHHHHCSCCCCEEEEEEEEEEEEEEEEEEC-------CCEEEEEEEEEEEESHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCHHHHHHHHhcCCCCcCCCCceeEEEEEEEEEECCccccccccCceeEEEEEEECCCcHhHHhHHHHHhcCCCEEEEE
Confidence 68999998665432 222333332223344441000 00157899999999999999999999999999999
Q ss_pred EeCCCCCChhHHHHH-HHHHH----cCCCcEEEEECCcchhh
Q psy2609 72 VDCVEGICAQTQVAL-KQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 72 vd~~~~~~~~~~~~~-~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
+|+++.........| ..+.. .++|+++|+||+|+...
T Consensus 115 ~D~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~~ 156 (217)
T 2f7s_A 115 FDLTSQQSFLNVRNWMSQLQANAYCENPDIVLIGNKADLPDQ 156 (217)
T ss_dssp EETTCHHHHHHHHHHHHTCCCCCTTTCCEEEEEEECTTCGGG
T ss_pred EECcCHHHHHHHHHHHHHHHHhcCcCCCCEEEEEECCccccc
Confidence 999864332222211 21211 46899999999999753
No 108
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=99.44 E-value=3.1e-14 Score=106.10 Aligned_cols=99 Identities=18% Similarity=0.233 Sum_probs=64.5
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
+||||+++..+.... ...-|+......+.+. ++++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 35 ~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s 107 (198)
T 1f6b_A 35 NAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIA-------GMTFTTFDLGGHIQARRVWKNYLPAINGIVFLVDCADHER 107 (198)
T ss_dssp TSSHHHHHHHHSCC------CCCCCSCEEEEET-------TEEEEEEEECC----CCGGGGGGGGCSEEEEEEETTCGGG
T ss_pred CCCHHHHHHHHhcCCCCccCCCCCceeEEEEEC-------CEEEEEEECCCcHhhHHHHHHHHhcCCEEEEEEECCCHHH
Confidence 689999876554211 1112333334455554 5899999999999998888899999999999999986543
Q ss_pred hhHH-HHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 80 AQTQ-VALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
.... ..+..+. ..++|+++|+||+|+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 140 (198)
T 1f6b_A 108 LLESKEELDSLMTDETIANVPILILGNKIDRPE 140 (198)
T ss_dssp HHHHHHHHHHHHTCGGGTTSCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHhCcccCCCcEEEEEECCCccc
Confidence 3222 2222221 25799999999999965
No 109
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=99.44 E-value=2.2e-14 Score=104.38 Aligned_cols=101 Identities=15% Similarity=0.047 Sum_probs=68.7
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+ ..+..+.+. ......+.+. +..+++.+|||||++++...+..+++.+|++++|+|+++
T Consensus 15 ~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 88 (186)
T 1mh1_A 15 AVGKTCLLISYTTNAFPGEYIPTVF-DNYSANVMVD-----GKPVNLGLWDTAGQEDYDRLRPLSYPQTDVSLICFSLVS 88 (186)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCCSC-CEEEEEEEET-----TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCcCCccc-ceeEEEEEEC-----CEEEEEEEEECCCCHhHHHHHHHhccCCcEEEEEEECCC
Confidence 68999998443 333322222 1112223333 457889999999999998888889999999999999986
Q ss_pred CCChhHHH--HHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV--ALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~--~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
..+..... +...+... ++|+++|+||+|+...
T Consensus 89 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 124 (186)
T 1mh1_A 89 PASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDD 124 (186)
T ss_dssp HHHHHHHHHTHHHHHHHHSTTSCEEEEEECHHHHTC
T ss_pred hhhHHHHHHHHHHHHHHhCCCCCEEEEeEccccccc
Confidence 44333322 23333332 8999999999999753
No 110
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=99.44 E-value=8.3e-14 Score=101.20 Aligned_cols=102 Identities=19% Similarity=0.061 Sum_probs=67.7
Q ss_pred ccccccccCCchhHHHc----CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER----GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~----giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+....-. ..+.......+.+. +..+.+.||||||++++...+..+++.+|++++|+|+++.
T Consensus 28 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 102 (187)
T 2a9k_A 28 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD-----GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 102 (187)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCTTCCEEEEEEEEET-----TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHhhCCCCCcCCCccceEEEEEEEEC-----CEEEEEEEEECCCCcccHHHHHHHhccCCEEEEEEECcCH
Confidence 68999998666533211 11111111222333 4467899999999999999999999999999999999854
Q ss_pred CChhHH-HHHHHHH----HcCCCcEEEEECCcchhh
Q psy2609 78 ICAQTQ-VALKQAW----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~~ 108 (161)
...... .++..+. ..++|+++|+||+|+...
T Consensus 103 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 138 (187)
T 2a9k_A 103 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 138 (187)
T ss_dssp HHHHHHHHHHHHHHHHHCCTTCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccccc
Confidence 322221 1112221 237999999999999753
No 111
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=99.44 E-value=4.1e-14 Score=105.35 Aligned_cols=102 Identities=19% Similarity=0.098 Sum_probs=67.7
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. +..+.+.||||||++++...+..+++.+|++|+|+|+++
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 109 (200)
T 2o52_A 35 GTGKSCLLHQFIENKFKQDSNHTIGVEFGSRVVNVG-----GKTVKLQIWDTAGQERFRSVTRSYYRGAAGALLVYDITS 109 (200)
T ss_dssp TSSHHHHHHHHHC------------CCEEEEEEEET-----TEEEEEEEECCTTHHHHSCCCHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCccCCCcccceeEEEEEEEC-----CeeeEEEEEcCCCcHhHHHHHHHHhccCCEEEEEEECcC
Confidence 689999986553 3344455544433444444 446899999999999988888999999999999999986
Q ss_pred CCChhHH-HHHHHHH---HcCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ-VALKQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+. ..++|+++|+||+|+...
T Consensus 110 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 145 (200)
T 2o52_A 110 RETYNSLAAWLTDARTLASPNIVVILCGNKKDLDPE 145 (200)
T ss_dssp HHHHHTHHHHHHHHHHHTCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECCCcccc
Confidence 4332222 2222222 247899999999999643
No 112
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=99.44 E-value=4.6e-14 Score=103.53 Aligned_cols=101 Identities=20% Similarity=0.129 Sum_probs=70.0
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..+.++.......+.+. +..+++.||||||++++...+..+++.+|++|+|+|++.
T Consensus 25 ~~GKssli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~ 99 (195)
T 1x3s_A 25 GVGKSSLLLRFTDDTFDPELAATIGVDFKVKTISVD-----GNKAKLAIWDTAGQERFRTLTPSYYRGAQGVILVYDVTR 99 (195)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCCCCSEEEEEEEEEET-----TEEEEEEEEEECSSGGGCCSHHHHHTTCCEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCccCCCccceEEEEEEEEEC-----CeEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECcC
Confidence 68999998666432 23333333333334443 447899999999999999999999999999999999986
Q ss_pred CCChhHH-HHHHHHHH----cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAWL----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~----~~~p~ilv~NK~Dl~~ 107 (161)
....... .++..+.. .++|+++|+||+|+..
T Consensus 100 ~~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 135 (195)
T 1x3s_A 100 RDTFVKLDNWLNELETYCTRNDIVNMLVGNKIDKEN 135 (195)
T ss_dssp HHHHHTHHHHHHHHTTCCSCSCCEEEEEEECTTSSS
T ss_pred HHHHHHHHHHHHHHHHhcCcCCCcEEEEEECCcCcc
Confidence 4332222 22223322 3688999999999953
No 113
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=99.44 E-value=4.5e-14 Score=103.26 Aligned_cols=99 Identities=16% Similarity=0.068 Sum_probs=70.4
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+.... ...-|+......+.+. +..+.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~D~~~~~s 103 (181)
T 2h17_A 31 NAGKTTILYQFSMNEVVHTSPTIGSNVEEIVIN-------NTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRER 103 (181)
T ss_dssp TSSHHHHHHHHHTTSCEEEECCSSSSCEEEEET-------TEEEEEEEESSSGGGTCGGGGGGTTCCEEEEEEETTCTTT
T ss_pred CCCHHHHHHHHhcCCCCccCCcCceeeEEEEEC-------CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence 689999987665332 1222333333444444 6899999999999999889999999999999999987644
Q ss_pred hhHH-HHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 80 AQTQ-VALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
.... ..+..+. ..++|+++|+||+|+..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 136 (181)
T 2h17_A 104 ISVTREELYKMLAHEDLRKAGLLIFANKQDVKE 136 (181)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHhChhhCCCeEEEEEECCCccc
Confidence 3332 2222222 25789999999999965
No 114
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=99.44 E-value=7.4e-15 Score=110.31 Aligned_cols=105 Identities=16% Similarity=0.128 Sum_probs=69.4
Q ss_pred ccccccccCCchhHH---HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ---ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~---~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~ 78 (161)
++|||++++.+.... ....|+........+... .+..+.+.+|||||++++......+++.+|++|+|+|++++.
T Consensus 21 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~--~~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~ 98 (218)
T 4djt_A 21 GVGKTTYINRVLDGRFEKNYNATVGAVNHPVTFLDD--QGNVIKFNVWDTAGQEKKAVLKDVYYIGASGAILFFDVTSRI 98 (218)
T ss_dssp TSSHHHHHCBCTTCSTTCEEETTTTEEEEEEEEEBT--TSCEEEEEEEEECSGGGTSCCCHHHHTTCSEEEEEEETTCHH
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeeEEEEEEeC--CCcEEEEEEEecCCchhhchHHHHHhhcCCEEEEEEeCCCHH
Confidence 689999998876332 112233222333333221 123378999999999999888899999999999999998654
Q ss_pred ChhHHH-HHHHHH---HcCCCcEEEEECCcchhh
Q psy2609 79 CAQTQV-ALKQAW---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 79 ~~~~~~-~~~~~~---~~~~p~ilv~NK~Dl~~~ 108 (161)
+..... ++..+. ..++|+++|+||+|+...
T Consensus 99 s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 132 (218)
T 4djt_A 99 TCQNLARWVKEFQAVVGNEAPIVVCANKIDIKNR 132 (218)
T ss_dssp HHHTHHHHHHHHHHHHCSSSCEEEEEECTTCC--
T ss_pred HHHHHHHHHHHHHHhcCCCCCEEEEEECCCCccc
Confidence 433322 222222 236899999999999753
No 115
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=99.43 E-value=5.7e-14 Score=103.91 Aligned_cols=99 Identities=17% Similarity=0.173 Sum_probs=70.2
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+.... ....|+......+.+. ++++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 33 ~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s 105 (190)
T 1m2o_B 33 NAGKTTLLHMLKNDRLATLQPTWHPTSEELAIG-------NIKFTTFDLGGHIQARRLWKDYFPEVNGIVFLVDAADPER 105 (190)
T ss_dssp TSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEET-------TEEEEEEECCCSGGGTTSGGGGCTTCCEEEEEEETTCGGG
T ss_pred CCCHHHHHHHHhcCCCCccccCCCCCeEEEEEC-------CEEEEEEECCCCHHHHHHHHHHHhcCCEEEEEEECCChHH
Confidence 689999987665422 1222444434444444 5899999999999998888889999999999999987544
Q ss_pred hhHH-HHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 80 AQTQ-VALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
.... ..+..+. ..++|+++|+||+|+..
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~ 138 (190)
T 1m2o_B 106 FDEARVELDALFNIAELKDVPFVILGNKIDAPN 138 (190)
T ss_dssp HHHHHHHHHHHHTCGGGTTCCEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHcchhhcCCCEEEEEECCCCcC
Confidence 3322 2222221 25799999999999975
No 116
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=99.43 E-value=3.9e-14 Score=104.30 Aligned_cols=102 Identities=17% Similarity=0.117 Sum_probs=69.7
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.++.......+.+. +..+++.||||||++++...+..+++.+|++|+|+|++.
T Consensus 35 ~~GKSsLi~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vi~v~D~~~ 109 (193)
T 2oil_A 35 GVGKTNLLSRFTRNEFSHDSRTTIGVEFSTRTVMLG-----TAAVKAQIWDTAGLERYRAITSAYYRGAVGALLVFDLTK 109 (193)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSSEEEEEEEEEET-----TEEEEEEEEEESCCCTTCTTHHHHHTTCCEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEeCCCchhhhhhhHHHhccCCEEEEEEECCC
Confidence 689999987665432 2222222222233333 447899999999999999999999999999999999986
Q ss_pred CCChhH-HHHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
...... ..++..+.. .++|+++|+||+|+...
T Consensus 110 ~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~~ 145 (193)
T 2oil_A 110 HQTYAVVERWLKELYDHAEATIVVMLVGNKSDLSQA 145 (193)
T ss_dssp HHHHHTHHHHHHHHHTTSCTTCEEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEECCCcccc
Confidence 433221 222222322 37899999999999754
No 117
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=99.43 E-value=1.5e-13 Score=100.72 Aligned_cols=100 Identities=16% Similarity=0.080 Sum_probs=68.0
Q ss_pred ccccccccCCchhHHH--cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE--RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~--~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||+++..+..+.- ..-|+......+.+. .+++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 26 ~vGKSsL~~~l~~~~~~~~~~t~g~~~~~~~~~-------~~~l~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~~s 98 (181)
T 1fzq_A 26 NAGKTTLLKQLASEDISHITPTQGFNIKSVQSQ-------GFKLNVWDIGGQRKIRPYWRSYFENTDILIYVIDSADRKR 98 (181)
T ss_dssp TSSHHHHHHHHCCSCCEEEEEETTEEEEEEEET-------TEEEEEEECSSCGGGHHHHHHHHTTCSEEEEEEETTCGGG
T ss_pred CCCHHHHHHHHhcCCCCcccCcCCeEEEEEEEC-------CEEEEEEECCCCHHHHHHHHHHhCCCCEEEEEEECcCHHH
Confidence 6899999866543311 011222222233333 6899999999999999999999999999999999986543
Q ss_pred hhHH-HHHHHH-H---HcCCCcEEEEECCcchhh
Q psy2609 80 AQTQ-VALKQA-W---LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~~-~~~~~~-~---~~~~p~ilv~NK~Dl~~~ 108 (161)
.... ..+..+ . ..++|+++|+||+|+...
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~piilv~NK~Dl~~~ 132 (181)
T 1fzq_A 99 FEETGQELTELLEEEKLSCVPVLIFANKQDLLTA 132 (181)
T ss_dssp HHHHHHHHHHHTTCGGGTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHhChhhcCCCEEEEEECcCcccC
Confidence 3222 222222 1 257899999999999753
No 118
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=99.43 E-value=6.6e-15 Score=107.19 Aligned_cols=100 Identities=20% Similarity=0.097 Sum_probs=64.8
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..+.+.... ...+.+. +..+++.+|||||++++......+++.+|++++|+|+++
T Consensus 16 ~~GKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (181)
T 3t5g_A 16 SVGKSSLTIQFVEGQFVDSYDPTIENTF-TKLITVN-----GQEYHLQLVDTAGQDEYSIFPQTYSIDINGYILVYSVTS 89 (181)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-----TEEEEEEEEECCCCCTTCCCCGGGTTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCCccccE-EEEEEEC-----CEEEEEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECCC
Confidence 68999997665422 222222111 2223333 446889999999999998888889999999999999985
Q ss_pred CCChhHH-----HHHHHHHHcCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-----VALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-----~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .+.......++|+++|+||+|+..
T Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 125 (181)
T 3t5g_A 90 IKSFEVIKVIHGKLLDMVGKVQIPIMLVGNKKDLHM 125 (181)
T ss_dssp HHHHHHHHHHHHHHHHHC----CCEEEEEECTTCTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccchh
Confidence 3322221 122222234799999999999864
No 119
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=99.43 E-value=3.2e-14 Score=104.05 Aligned_cols=100 Identities=19% Similarity=0.126 Sum_probs=69.4
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+.... ...-|+......+.+. ..++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 28 ~~GKssl~~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 100 (186)
T 1ksh_A 28 NAGKTTILKKFNGEDVDTISPTLGFNIKTLEHR-------GFKLNIWDVGGQKSLRSYWRNYFESTDGLIWVVDSADRQR 100 (186)
T ss_dssp TSSHHHHHHHHTTCCCSSCCCCSSEEEEEEEET-------TEEEEEEEECCSHHHHTTGGGGCTTCSEEEEEEETTCGGG
T ss_pred CCCHHHHHHHHhcCCCCcccccCccceEEEEEC-------CEEEEEEECCCCHhHHHHHHHHhcCCCEEEEEEECcCHHH
Confidence 689999986654322 1122333333334443 7899999999999999999999999999999999986544
Q ss_pred hhHH-HHHHHHH----HcCCCcEEEEECCcchhh
Q psy2609 80 AQTQ-VALKQAW----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~~ 108 (161)
.... ..+..+. ..++|+++|+||+|+...
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 134 (186)
T 1ksh_A 101 MQDCQRELQSLLVEERLAGATLLIFANKQDLPGA 134 (186)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHhChhcCCCcEEEEEeCccCCCC
Confidence 3332 2222222 247899999999999653
No 120
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=99.43 E-value=3.2e-14 Score=102.55 Aligned_cols=102 Identities=16% Similarity=0.010 Sum_probs=60.6
Q ss_pred ccccccccCCchhHHH----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchh--hHHHHHHHHHhcCEEEEEEeCC
Q psy2609 2 LCMVSSYMDSRKDEQE----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD--FSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~--~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
++|||++++.+..... +..........+.+. +..+++.+|||||+++ +......+++.+|++++|+|++
T Consensus 14 ~vGKSsl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~g~~~~~~~~~~~~~~~~~~~~i~v~d~~ 88 (175)
T 2nzj_A 14 GVGKTSLASLFAGKQERDLHEQLGEDVYERTLTVD-----GEDTTLVVVDTWEAEKLDKSWSQESCLQGGSAYVIVYSIA 88 (175)
T ss_dssp TSSHHHHHHHHHCC-----CCCSSSSEEEEEEEET-----TEEEEEEEECCC-------CHHHHHTTTSCSEEEEEEETT
T ss_pred CccHHHHHHHHhcCCCccccCccccceeEEEEEEC-----CEEEEEEEEecCCCCccchhhhHHhhcccCCEEEEEEECC
Confidence 6899999866543221 111122222333343 4467899999999988 4556677888999999999998
Q ss_pred CCCChhHH-HHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 76 EGICAQTQ-VALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 76 ~~~~~~~~-~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
+..+.... .++..+.. .++|+++|+||+|+...
T Consensus 89 ~~~s~~~~~~~~~~l~~~~~~~~~piilv~NK~Dl~~~ 126 (175)
T 2nzj_A 89 DRGSFESASELRIQLRRTHQADHVPIILVGNKADLARC 126 (175)
T ss_dssp CHHHHHHHHHHHHHHHHCC----CCEEEEEECTTCTTT
T ss_pred CHHHHHHHHHHHHHHHHhhccCCCCEEEEEEChhhccc
Confidence 54332222 22233332 37999999999999753
No 121
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=99.43 E-value=4e-14 Score=105.41 Aligned_cols=101 Identities=18% Similarity=0.087 Sum_probs=71.9
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. +..+.+.+|||||++++...+..+++.+|++|+|+|++.
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~vilv~d~~~ 92 (206)
T 2bcg_Y 18 GVGKSCLLLRFSDDTYTNDYISTIGVDFKIKTVELD-----GKTVKLQIWDTAGQERFRTITSSYYRGSHGIIIVYDVTD 92 (206)
T ss_dssp TSSHHHHHHHHHHCCCCTTCCCSSCCCEEEEEEEET-----TEEEEEEEECCTTTTTTTCCCGGGGTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-----CEEEEEEEEeCCChHHHHHHHHHhccCCCEEEEEEECcC
Confidence 689999986554 3334555554444444454 446799999999999998889999999999999999986
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
..+..... ++..+.. .++|+++|+||+|+..
T Consensus 93 ~~s~~~~~~~~~~i~~~~~~~~piilv~nK~Dl~~ 127 (206)
T 2bcg_Y 93 QESFNGVKMWLQEIDRYATSTVLKLLVGNKCDLKD 127 (206)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCEEEEEEECTTCTT
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCEEEEEECCCCcc
Confidence 44332222 2222222 4689999999999965
No 122
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=99.42 E-value=6.3e-14 Score=102.54 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=70.0
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH------HHHHHHHHh--cCEE
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS------SEVSTAVRL--CDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~------~~~~~~l~~--~d~~ 68 (161)
++|||++++.+.. +..+++|++.....+.+. +..+.+|||||++++. .....+++. +|++
T Consensus 17 gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (188)
T 2wjg_A 17 NVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYN-------GEKFKVVDLPGVYSLTANSIDEIIARDYIINEKPDLV 89 (188)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-------TEEEEEEECCCCSCCSSSSHHHHHHHHHHHHHCCSEE
T ss_pred CCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeC-------CcEEEEEECCCcCccccccHHHHHHHHHHhccCCCEE
Confidence 6899999866643 334566666555555554 6899999999998773 345666654 9999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++|+|++. ......++..+...++|+++|+||+|+....
T Consensus 90 i~v~d~~~--~~~~~~~~~~~~~~~~piilv~nK~Dl~~~~ 128 (188)
T 2wjg_A 90 VNIVDATA--LERNLYLTLQLMEMGANLLLALNKMDLAKSL 128 (188)
T ss_dssp EEEEEGGG--HHHHHHHHHHHHTTTCCEEEEEECHHHHHHT
T ss_pred EEEecchh--HHHHHHHHHHHHhcCCCEEEEEEhhhccccc
Confidence 99999874 1222334444555689999999999997543
No 123
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=99.42 E-value=2.1e-13 Score=100.95 Aligned_cols=102 Identities=19% Similarity=0.069 Sum_probs=68.2
Q ss_pred ccccccccCCchhHHH----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+....- .+.+.......+.+. +..+.+.||||||++++...+..+++.+|++++|+|+++.
T Consensus 24 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 98 (206)
T 2bov_A 24 GVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLD-----GEEVQIDILDTAGQEDYAAIRDNYFRSGEGFLCVFSITEM 98 (206)
T ss_dssp TSSHHHHHHHHHHSCCCTTCCTTCCEEEEEEEEET-----TEEEEEEEEECCCTTCCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEC-----CEEEEEEEEcCCChhhhHHHHHHHHhhCCEEEEEEECCCH
Confidence 6899999866643321 111111112233333 4467899999999999999999999999999999999854
Q ss_pred CChhHH-HHHHHHH----HcCCCcEEEEECCcchhh
Q psy2609 78 ICAQTQ-VALKQAW----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.... .++..+. ..++|+++|+||+|+...
T Consensus 99 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 134 (206)
T 2bov_A 99 ESFAATADFREQILRVKEDENVPFLLVGNKSDLEDK 134 (206)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEeccCcccc
Confidence 322221 1222222 237899999999999753
No 124
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=99.42 E-value=6.8e-14 Score=103.65 Aligned_cols=100 Identities=16% Similarity=0.065 Sum_probs=62.7
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+.... ...-|+......+.+. .+.+.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 39 ~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~iilv~D~~~~~s 111 (192)
T 2b6h_A 39 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-------NICFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 111 (192)
T ss_dssp TSSHHHHHHHHCSSCCEEEEEETTEEEEEEEET-------TEEEEEEECC-----CTTHHHHHHTCCEEEEEEETTCGGG
T ss_pred CCCHHHHHHHHHhCCccccCCcCceeEEEEEEC-------CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence 689999876553211 1111333222233333 7899999999999998889999999999999999986543
Q ss_pred hhHH-HHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 80 AQTQ-VALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~~-~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
.... ..+..+.. .++|+++|+||+|+...
T Consensus 112 ~~~~~~~l~~~~~~~~~~~~piilv~NK~Dl~~~ 145 (192)
T 2b6h_A 112 VQESADELQKMLQEDELRDAVLLVFANKQDMPNA 145 (192)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHhcccccCCCeEEEEEECCCCCCC
Confidence 2222 22222221 37899999999999653
No 125
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=99.42 E-value=3.6e-14 Score=107.35 Aligned_cols=101 Identities=16% Similarity=0.096 Sum_probs=67.3
Q ss_pred ccccccccCCch-----hHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRK-----DEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~-----~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+. .+..++++.+.....+.+. +..+.+.||||||+++|...+..+++.+|++|+|+|+++
T Consensus 23 ~vGKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~vilV~D~~~ 97 (223)
T 3cpj_B 23 GVGKSNLLSRFTKNEFNMDSKSTIGVEFATRTLEIE-----GKRIKAQIWDTAGQERYRAITSAYYRGAVGALIVYDISK 97 (223)
T ss_dssp TSSHHHHHHHHHHCCCCC------CCSEEEEEEEET-----TEEEEEEEECCTTTTTTTCCCGGGTTTCCEEEEEEC-CC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccceeEEEEEEEC-----CEEEEEEEEECCCccchhhhHHHHhccCCEEEEEEeCCC
Confidence 689999986553 3444555554444445454 446899999999999998888999999999999999986
Q ss_pred CCChhHHH-HHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQV-ALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
........ ++..+.. .++|+++|+||+|+..
T Consensus 98 ~~s~~~~~~~l~~i~~~~~~~~piilv~nK~Dl~~ 132 (223)
T 3cpj_B 98 SSSYENCNHWLSELRENADDNVAVGLIGNKSDLAH 132 (223)
T ss_dssp HHHHHHHHHHHHHHHHHCC--CEEEEEECCGGGGG
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECccccc
Confidence 54333322 2222322 3789999999999975
No 126
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=99.42 E-value=4.1e-14 Score=110.69 Aligned_cols=99 Identities=18% Similarity=0.161 Sum_probs=73.2
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH------HHHHHH--HhcCEE
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS------EVSTAV--RLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~------~~~~~l--~~~d~~ 68 (161)
+||||++++.+... ..+|+|++.....+.+. +..+.+|||||+.++.. .+..++ ..+|++
T Consensus 13 g~GKTTL~n~l~g~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~d~v 85 (271)
T 3k53_A 13 NVGKTTIFNALTGLRQHVGNWPGVTVEKKEGIMEYR-------EKEFLVVDLPGIYSLTAHSIDELIARNFILDGNADVI 85 (271)
T ss_dssp SSSHHHHHHHHHTTCEEEEECTTSSCEEEEEEEEET-------TEEEEEEECCCCSCCCSSCHHHHHHHHHHHTTCCSEE
T ss_pred CCCHHHHHHHHhCCCcccCCCCCeEEEeeEEEEEEC-------CceEEEEeCCCccccccCCHHHHHHHHhhhccCCcEE
Confidence 78999998666433 45678887776667666 67899999999987654 455566 579999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcC-CCcEEEEECCcchhhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEK-IQPILVLNKIDRLILE 109 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~-~p~ilv~NK~Dl~~~~ 109 (161)
++|+|++.. ......+..+...+ +|+++|+||+|+....
T Consensus 86 i~v~D~~~~--~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 125 (271)
T 3k53_A 86 VDIVDSTCL--MRNLFLTLELFEMEVKNIILVLNKFDLLKKK 125 (271)
T ss_dssp EEEEEGGGH--HHHHHHHHHHHHTTCCSEEEEEECHHHHHHH
T ss_pred EEEecCCcc--hhhHHHHHHHHhcCCCCEEEEEEChhcCccc
Confidence 999999863 23344445555566 9999999999987543
No 127
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=99.42 E-value=5.5e-14 Score=118.63 Aligned_cols=99 Identities=14% Similarity=0.076 Sum_probs=58.7
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHH--------HHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE--------VSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~--------~~~~l~~~d~ 67 (161)
|||||++++.+..+ ..+|+|++.....+.+. ++.+.||||||++++... +..+++.+|+
T Consensus 243 nvGKSSLln~L~~~~~a~vs~~~gtT~d~~~~~i~~~-------g~~l~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~ 315 (476)
T 3gee_A 243 NAGKSTLLNTLLGQERAIVSHMPGTTRDYIEECFIHD-------KTMFRLTDTAGLREAGEEIEHEGIRRSRMKMAEADL 315 (476)
T ss_dssp TSSHHHHHHHCC------------------CEEEEET-------TEEEEEEC--------------------CCCSSCSE
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCceEEEEEEEEEEC-------CeEEEEEECCCCCcchhHHHHHHHHHHHhhcccCCE
Confidence 79999998777544 35678887766666665 679999999999876543 3446788999
Q ss_pred EEEEEeCCCCCCh----hHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 68 TIIVVDCVEGICA----QTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 68 ~ilVvd~~~~~~~----~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+++|+|++++... ....++..+. ++|+++|+||+|+....
T Consensus 316 vl~VvD~s~~~s~~~~~~~~~~l~~l~--~~piIvV~NK~Dl~~~~ 359 (476)
T 3gee_A 316 ILYLLDLGTERLDDELTEIRELKAAHP--AAKFLTVANKLDRAANA 359 (476)
T ss_dssp EEEEEETTTCSSGGGHHHHHHHHHHCT--TSEEEEEEECTTSCTTT
T ss_pred EEEEEECCCCcchhhhHHHHHHHHhcC--CCCEEEEEECcCCCCcc
Confidence 9999999987765 3344444333 78999999999997543
No 128
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=99.42 E-value=2.6e-13 Score=99.47 Aligned_cols=65 Identities=25% Similarity=0.246 Sum_probs=51.5
Q ss_pred eeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH-HHHHH-HHcCCCcEEEEECCcc
Q psy2609 41 YLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV-ALKQA-WLEKIQPILVLNKIDR 105 (161)
Q Consensus 41 ~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~-~~~~~-~~~~~p~ilv~NK~Dl 105 (161)
..+.||||||++++...+..+++.+|++++|+|++++....... ++..+ ...++|+++|+||+|+
T Consensus 93 ~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~D~~~~~s~~~~~~~~~~i~~~~~~piilv~NK~D~ 159 (208)
T 3clv_A 93 IKFDIWDTAGQERYASIVPLYYRGATCAIVVFDISNSNTLDRAKTWVNQLKISSNYIIILVANKIDK 159 (208)
T ss_dssp EEEEEEECTTGGGCTTTHHHHHTTCSEEEEEEETTCHHHHHHHHHHHHHHHHHSCCEEEEEEECTTC
T ss_pred eEEEEEECCCcHHHHHHHHHHhcCCCEEEEEEECCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCc
Confidence 89999999999999999999999999999999998654333322 22222 2346899999999993
No 129
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.42 E-value=4.4e-14 Score=104.07 Aligned_cols=101 Identities=17% Similarity=0.075 Sum_probs=66.8
Q ss_pred ccccccccCCchhHHHc---CCccccceEE-EEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER---GITMKSSSIS-LYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~---giti~~~~~~-~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+....-. .-|+...... +... +..+.+.||||||++++...+..+++.+|++++|+|++..
T Consensus 18 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 92 (199)
T 2gf0_A 18 GVGKSSLVLRFVKGTFRDTYIPTIEDTYRQVISCD-----KSVCTLQITDTTGSHQFPAMQRLSISKGHAFILVFSVTSK 92 (199)
T ss_dssp TSSHHHHHHHHHHSCCCCTTSCCCCEEEEEEEEET-----TEEEEEEEEECCGGGSCHHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCcHHHHHHHHHcCCCCCcccCccccceeEEEEEC-----CEEEEEEEEeCCChHHhHHHHHHhhccCCEEEEEEECcCH
Confidence 68999998766542211 1122111111 1122 4467899999999999999999999999999999999853
Q ss_pred CChhH-HHHHHHHHH-----cCCCcEEEEECCcchh
Q psy2609 78 ICAQT-QVALKQAWL-----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~~~~~~~~~-----~~~p~ilv~NK~Dl~~ 107 (161)
..... ..++..+.. .++|+++|+||+|+..
T Consensus 93 ~s~~~~~~~~~~i~~~~~~~~~~piilv~nK~Dl~~ 128 (199)
T 2gf0_A 93 QSLEELGPIYKLIVQIKGSVEDIPVMLVGNKCDETQ 128 (199)
T ss_dssp HHHHTTHHHHHHHHHHHSCGGGSCEEEEEECTTCSS
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCCc
Confidence 22111 122222222 3789999999999975
No 130
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=99.41 E-value=5.8e-14 Score=109.60 Aligned_cols=98 Identities=24% Similarity=0.254 Sum_probs=72.2
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH------HHHHHH--HhcCEE
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS------EVSTAV--RLCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~------~~~~~l--~~~d~~ 68 (161)
|+|||++++.+.. ...+|+|++.....+.+. ...+.+|||||+..+.. .+..++ ..+|++
T Consensus 15 nvGKTsL~n~l~g~~~~~~~~pg~tv~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~i 87 (258)
T 3a1s_A 15 NVGKTSLFNALTGTKQYVANWPGVTVEKKEGVFTYK-------GYTINLIDLPGTYSLGYSSIDEKIARDYLLKGDADLV 87 (258)
T ss_dssp TSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEET-------TEEEEEEECCCCSSCCSSSHHHHHHHHHHHHSCCSEE
T ss_pred CCCHHHHHHHHHCCCCcccCCCCceEEEEEEEEEEC-------CeEEEEEECCCcCccCCCCHHHHHHHHHHhhcCCCEE
Confidence 7899999876654 334688887666666554 68999999999977642 345555 479999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++|+|++.. .....++..+...++|+++|+||+|+...
T Consensus 88 i~V~D~t~~--~~~~~~~~~l~~~~~pvilv~NK~Dl~~~ 125 (258)
T 3a1s_A 88 ILVADSVNP--EQSLYLLLEILEMEKKVILAMTAIDEAKK 125 (258)
T ss_dssp EEEEETTSC--HHHHHHHHHHHTTTCCEEEEEECHHHHHH
T ss_pred EEEeCCCch--hhHHHHHHHHHhcCCCEEEEEECcCCCCc
Confidence 999999863 22333445556678999999999999754
No 131
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=99.41 E-value=5.9e-15 Score=109.80 Aligned_cols=102 Identities=16% Similarity=0.114 Sum_probs=65.5
Q ss_pred ccccccccCCchhHHHcC---Cccccc-eEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQERG---ITMKSS-SISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~g---iti~~~-~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+....-.. -|.... ...+.+. +..+.+.||||||++++...+..+++.+|++++|+|+++.
T Consensus 34 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 108 (201)
T 3oes_A 34 CVGKTSLAHQFVEGEFSEGYDPTVENTYSKIVTLG-----KDEFHLHLVDTAGQDEYSILPYSFIIGVHGYVLVYSVTSL 108 (201)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCCCSEEEEEEEEC---------CEEEEEEEECCCCTTCCCCGGGTTTCCEEEEEEETTCH
T ss_pred CcCHHHHHHHHHhCCCCCCCCCccceEEEEEEEEC-----CEEEEEEEEECCCccchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 689999987765433111 111111 1111122 4578999999999999988889999999999999999854
Q ss_pred CChhHHH-HHHHHH----HcCCCcEEEEECCcchhh
Q psy2609 78 ICAQTQV-ALKQAW----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 78 ~~~~~~~-~~~~~~----~~~~p~ilv~NK~Dl~~~ 108 (161)
....... ++..+. ..++|+++|+||+|+...
T Consensus 109 ~s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 3oes_A 109 HSFQVIESLYQKLHEGHGKTRVPVVLVGNKADLSPE 144 (201)
T ss_dssp HHHHHHHHHHHHHHC-----CCCEEEEEECTTCGGG
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCEEEEEECccCccc
Confidence 3322222 222222 247899999999999754
No 132
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=99.41 E-value=6e-14 Score=99.65 Aligned_cols=101 Identities=16% Similarity=0.114 Sum_probs=67.2
Q ss_pred ccccccccCCchhHHHc---CCcccc-ceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER---GITMKS-SSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~---giti~~-~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+....-. .-|... ....+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++.
T Consensus 13 ~~GKssl~~~l~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~D~~G~~~~~~~~~~~~~~~~~~i~v~d~~~~ 87 (166)
T 2ce2_X 13 GVGKSALTIQLIQNHFVDECDPTIEDSYRKQVVID-----GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNT 87 (166)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEET-----TEEEEEEEEECCCCSSCCHHHHHHHHHCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHHhCcCccccCCccceEEEEEEEEC-----CEEEEEEEEECCCchhhhHHHHHhhccCCEEEEEEECCCH
Confidence 68999998766533211 111111 11222233 4467899999999999999999999999999999999854
Q ss_pred CChhH-HHHHHHHHH----cCCCcEEEEECCcchh
Q psy2609 78 ICAQT-QVALKQAWL----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~ 107 (161)
..... ..++..+.. .++|+++|+||+|+..
T Consensus 88 ~~~~~~~~~~~~i~~~~~~~~~p~iiv~nK~Dl~~ 122 (166)
T 2ce2_X 88 KSFEDIHQYREQIKRVKDSDDVPMVLVGNKSDLAA 122 (166)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHHHHHHHHhcCCCCCcEEEEEEchhhhh
Confidence 32222 122222222 2799999999999875
No 133
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=99.41 E-value=9.4e-14 Score=102.33 Aligned_cols=96 Identities=13% Similarity=0.042 Sum_probs=63.5
Q ss_pred ccccccccCCchhHHH---cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE---RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI 78 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~---~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~ 78 (161)
++|||+++..+....- ..-|.......+.+. +..+.+.+|||||++++. +++.+|++++|+|+++..
T Consensus 30 ~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~-----~~~~~l~i~Dt~G~~~~~-----~~~~~~~~i~v~d~~~~~ 99 (184)
T 3ihw_A 30 SSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVD-----GQSYLLLIRDEGGPPELQ-----FAAWVDAVVFVFSLEDEI 99 (184)
T ss_dssp TSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEET-----TEEEEEEEEECSSSCCHH-----HHHHCSEEEEEEETTCHH
T ss_pred CCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEEC-----CEEEEEEEEECCCChhhh-----eecCCCEEEEEEECcCHH
Confidence 6899999865543220 111222112233444 456889999999999887 889999999999998654
Q ss_pred ChhH-HHHHHHHHH----cCCCcEEEEECCcchh
Q psy2609 79 CAQT-QVALKQAWL----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 79 ~~~~-~~~~~~~~~----~~~p~ilv~NK~Dl~~ 107 (161)
+... ..++..+.. .++|+++|+||+|+..
T Consensus 100 s~~~~~~~~~~i~~~~~~~~~piilv~nK~Dl~~ 133 (184)
T 3ihw_A 100 SFQTVYNYFLRLCSFRNASEVPMVLVGTQDAISA 133 (184)
T ss_dssp HHHHHHHHHHHHHTTSCGGGSCEEEEEECTTCBT
T ss_pred HHHHHHHHHHHHHHhcCCCCCCEEEEEECccccc
Confidence 4333 222333322 4689999999999953
No 134
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=99.41 E-value=3.8e-14 Score=103.98 Aligned_cols=101 Identities=16% Similarity=0.079 Sum_probs=57.5
Q ss_pred ccccccccCCchhHHHc----CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER----GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~----giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||++++.+...... +.+.......+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++.
T Consensus 31 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~ 105 (190)
T 3con_A 31 GVGKSALTIQLIQNHFVDEYDPTIEDSYRKQVVID-----GETCLLDILDTAGQEEYSAMRDQYMRTGEGFLCVFAINNS 105 (190)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEEEEEEEET-----TEEEEEEEEECCC-----------CTTCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHHcCCCccccCCccceEEEEEEEEC-----CEEEEEEEEECCChHHHHHHHHHhhCcCCEEEEEEECcCH
Confidence 68999998776533211 11111111223333 4467899999999999999999999999999999999864
Q ss_pred CChhHHH-HHHHHHH----cCCCcEEEEECCcchh
Q psy2609 78 ICAQTQV-ALKQAWL----EKIQPILVLNKIDRLI 107 (161)
Q Consensus 78 ~~~~~~~-~~~~~~~----~~~p~ilv~NK~Dl~~ 107 (161)
....... ++..+.. .++|+++|+||+|+..
T Consensus 106 ~s~~~~~~~~~~i~~~~~~~~~p~ilv~nK~Dl~~ 140 (190)
T 3con_A 106 KSFADINLYREQIKRVKDSDDVPMVLVGNKCDLPT 140 (190)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCCEEEEEECTTCSC
T ss_pred HHHHHHHHHHHHHHHHhCCCCCeEEEEEECCcCCc
Confidence 4322222 2222222 3799999999999875
No 135
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=99.40 E-value=8.9e-14 Score=104.86 Aligned_cols=100 Identities=10% Similarity=0.065 Sum_probs=68.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.... .+.+.... ...+... +..+.+.||||||+++|...+..+++.+|++|+|+|+++
T Consensus 37 ~vGKSsL~~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 110 (214)
T 3q3j_B 37 QCGKTAMLQVLAKDCYPETYVPTVFENY-TACLETE-----EQRVELSLWDTSGSPYYDNVRPLCYSDSDAVLLCFDISR 110 (214)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEEC-------CEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCcCCeeeeeE-EEEEEEC-----CEEEEEEEEECCCCHhHHHHHHHHcCCCeEEEEEEECcC
Confidence 689999986664332 22222221 1122222 457899999999999999999999999999999999987
Q ss_pred CCChhH--HHHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQT--QVALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~--~~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+... ..+...+.. .++|+++|+||+|+..
T Consensus 111 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 145 (214)
T 3q3j_B 111 PETVDSALKKWRTEILDYCPSTRVLLIGCKTDLRT 145 (214)
T ss_dssp THHHHHHHTHHHHHHHHHCTTSEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhcc
Confidence 544333 222233333 3789999999999975
No 136
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=99.39 E-value=1.4e-13 Score=103.63 Aligned_cols=101 Identities=14% Similarity=0.044 Sum_probs=53.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+. ......+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 44 ~vGKSsli~~l~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~l~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 117 (214)
T 2j1l_A 44 GCGKTSLLMVFADGAFPESYTPTVF-ERYMVNLQVK-----GKPVHLHIWDTAGQDDYDRLRPLFYPDASVLLLCFDVTS 117 (214)
T ss_dssp TSSHHHHHHHHHC-------CCCCC-EEEEEEEEET-----TEEEEEEEEEC---------------CEEEEEEEEETTC
T ss_pred CCCHHHHHHHHHcCCCCCCCCCccc-eeEEEEEEEC-----CEEEEEEEEECCCchhhhHHHHHHhccCCEEEEEEECcC
Confidence 689999986664322 22221 1111223333 446789999999999999999999999999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .+...+.. .++|+++|+||+|+...
T Consensus 118 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 153 (214)
T 2j1l_A 118 PNSFDNIFNRWYPEVNHFCKKVPIIVVGCKTDLRKD 153 (214)
T ss_dssp HHHHHHHHHTHHHHHHHHCSSCCEEEEEECGGGGSC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhhcc
Confidence 4333222 12222222 37899999999999754
No 137
>1xzp_A Probable tRNA modification GTPase TRME; GTP-binding, THF-binding, hydrolase; 2.30A {Thermotoga maritima} SCOP: a.24.25.1 c.37.1.8 d.250.1.2 PDB: 1xzq_A* 1xzp_B 1xzq_B*
Probab=99.39 E-value=4.6e-13 Score=113.15 Aligned_cols=97 Identities=16% Similarity=0.231 Sum_probs=77.6
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCch-hhH--------HHHHHHHHhcC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV-DFS--------SEVSTAVRLCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~-~~~--------~~~~~~l~~~d 66 (161)
|||||++++.+..+. .+|+|.+.....+.+. +..+.+|||||+. ++. ..+..+++.+|
T Consensus 253 nvGKSSLln~L~~~~~a~vs~~~gTT~d~~~~~i~~~-------g~~~~l~DTaG~~~~~~~~ve~~gi~~~~~~~~~aD 325 (482)
T 1xzp_A 253 NVGKSTLLNRLLNEDRAIVTDIPGTTRDVISEEIVIR-------GILFRIVDTAGVRSETNDLVERLGIERTLQEIEKAD 325 (482)
T ss_dssp HHHTCHHHHHHHHHTBCCCCCSSCCSSCSCCEEEEET-------TEEEEEEESSCCCSSCCTTCCCCCHHHHHHHHHHCS
T ss_pred CCcHHHHHHHHHCCCCCccCCCCCeeeeeEEEEEecC-------CeEEEEEECCCccccchhhHHHHHHHHHHHHhhccc
Confidence 789999998887664 3577887777777765 6789999999997 542 45678899999
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++|+|+|++.+.......+++.+ .++|+++|+||+|+..
T Consensus 326 ~vl~VvD~s~~~s~~~~~il~~l--~~~piivV~NK~DL~~ 364 (482)
T 1xzp_A 326 IVLFVLDASSPLDEEDRKILERI--KNKRYLVVINKVDVVE 364 (482)
T ss_dssp EEEEEEETTSCCCHHHHHHHHHH--TTSSEEEEEEECSSCC
T ss_pred EEEEEecCCCCCCHHHHHHHHHh--cCCCEEEEEECccccc
Confidence 99999999887776666666554 4789999999999964
No 138
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=99.39 E-value=1e-14 Score=109.03 Aligned_cols=101 Identities=12% Similarity=0.019 Sum_probs=66.6
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++..+.... .+.+.. .....+.+. +..+.+.+|||||+++|...+..+++.+|++|+|+|+++
T Consensus 19 ~~GKTsli~~l~~~~~~~~~~~t~~~-~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~d~~~ 92 (212)
T 2j0v_A 19 AVGKTCMLICYTSNKFPTDYIPTVFD-NFSANVAVD-----GQIVNLGLWDTAGQEDYSRLRPLSYRGADIFVLAFSLIS 92 (212)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCSSCC-CEEEEEECS-----SCEEEEEEECCCCCCCCCC--CGGGTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCccCCCccce-eEEEEEEEC-----CEEEEEEEEECCCcHHHHHHHHhhccCCCEEEEEEECCC
Confidence 689999876554322 222211 111222233 457899999999999999888899999999999999986
Q ss_pred CCChhHH--HHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+... ++|+++|+||+|+...
T Consensus 93 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 128 (212)
T 2j0v_A 93 KASYENVLKKWMPELRRFAPNVPIVLVGTKLDLRDD 128 (212)
T ss_dssp HHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEeCHHhhhC
Confidence 4333222 222333332 8999999999999753
No 139
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=99.39 E-value=6.5e-14 Score=103.20 Aligned_cols=101 Identities=15% Similarity=0.112 Sum_probs=69.1
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+... ....+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 28 ~~GKssli~~l~~~~~~~~~~~t~~~~-~~~~~~~~-----~~~~~~~i~D~~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 101 (194)
T 2atx_A 28 AVGKTCLLMSYANDAFPEEYVPTVFDH-YAVSVTVG-----GKQYLLGLYDTAGQEDYDRLRPLSYPMTDVFLICFSVVN 101 (194)
T ss_dssp TSSHHHHHHHHHHSSCCCSCCCSSCCC-EEEEEESS-----SCEEEEEEECCCCSSSSTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCcccce-eEEEEEEC-----CEEEEEEEEECCCCcchhHHHHHhcCCCCEEEEEEECCC
Confidence 689999986665332 1122111 11223333 456899999999999999888999999999999999986
Q ss_pred CCChhHH--HHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .++..+... ++|+++|+||+|+...
T Consensus 102 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (194)
T 2atx_A 102 PASFQNVKEEWVPELKEYAPNVPFLLIGTQIDLRDD 137 (194)
T ss_dssp HHHHHHHHHTHHHHHHHHSTTCCEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEEChhhccc
Confidence 4333222 223333333 8999999999999753
No 140
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=99.39 E-value=1.1e-13 Score=102.53 Aligned_cols=100 Identities=16% Similarity=0.014 Sum_probs=66.8
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..+.+. +.....+.+. +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 30 ~~GKssl~~~l~~~~~~~~~~~t~~-~~~~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 103 (201)
T 2q3h_A 30 AVGKTSLVVSYTTNGYPTEYIPTAF-DNFSAVVSVD-----GRPVRLQLCDTAGQDEFDKLRPLCYTNTDIFLLCFSVVS 103 (201)
T ss_dssp TSSHHHHHHHHHC--------CCSS-EEEEEEEEET-----TEEEEEEEEECCCSTTCSSSGGGGGTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCCCCCCccc-ceeEEEEEEC-----CEEEEEEEEECCCCHHHHHHhHhhcCCCcEEEEEEECCC
Confidence 6899999865542 2222221 1111223333 446789999999999998888889999999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .++..+.. .++|+++|+||+|+..
T Consensus 104 ~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 138 (201)
T 2q3h_A 104 PSSFQNVSEKWVPEIRCHCPKAPIILVGTQSDLRE 138 (201)
T ss_dssp HHHHHHHHHTHHHHHHHHCSSSCEEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEECHhhhh
Confidence 4433332 12222332 3899999999999975
No 141
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=99.38 E-value=1.2e-14 Score=105.67 Aligned_cols=71 Identities=15% Similarity=0.093 Sum_probs=50.4
Q ss_pred CCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH--HHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 38 PEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV--ALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 38 ~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~--~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
+..+.+.+|||||++++...+..+++.+|++++|+|+++..+..... +...+.. .++|+++|+||+|+...
T Consensus 53 ~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (182)
T 3bwd_D 53 GATVNLGLWDTAGQEDYNRLRPLSYRGADVFILAFSLISKASYENVSKKWIPELKHYAPGVPIVLVGTKLDLRDD 127 (182)
T ss_dssp -----CEEECCCC-CTTTTTGGGGGTTCSEEEEEEETTCHHHHHHHHHTHHHHHHHHCTTCCEEEEEECHHHHTC
T ss_pred CEEEEEEEEECCCChhhhhhHHhhccCCCEEEEEEECCCHHHHHHHHHHHHHHHHHhCCCCCEEEEEechhhhcC
Confidence 44678889999999999988999999999999999998644333221 2233332 37999999999999753
No 142
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=99.38 E-value=1.1e-13 Score=103.10 Aligned_cols=101 Identities=12% Similarity=-0.006 Sum_probs=69.4
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+... ..++++.... ..+.+. +..+.+.+|||||++++...+..+++.+|++++|+|++.
T Consensus 35 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 108 (201)
T 2gco_A 35 ACGKTCLLIVFSKDQFPEVYVPTVFENYI-ADIEVD-----GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSIDS 108 (201)
T ss_dssp TSSHHHHHHHHHHSSCCSSCCCSSCCCCE-EEEEET-----TEEEEEEEECCCCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCcCCcccCCcccceEE-EEEEEC-----CEEEEEEEEECCCchhHHHHHHHhcCCCCEEEEEEECCC
Confidence 68999998655432 2333333221 223333 446799999999999998888889999999999999985
Q ss_pred CCChhHH--HHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
....... .+...+... ++|+++|+||+|+...
T Consensus 109 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (201)
T 2gco_A 109 PDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRQD 144 (201)
T ss_dssp HHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGTTC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEecHHhhcC
Confidence 4322222 223333333 8999999999999753
No 143
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.38 E-value=9.1e-14 Score=101.11 Aligned_cols=99 Identities=17% Similarity=0.086 Sum_probs=66.0
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+.... ...-|+......+.+. +.++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 28 ~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~i~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 100 (183)
T 1moz_A 28 GAGKTTILYRLQIGEVVTTKPTIGFNVETLSYK-------NLKLNVWDLGGQTSIRPYWRCYYADTAAVIFVVDSTDKDR 100 (183)
T ss_dssp TSSHHHHHHHTCCSEEEEECSSTTCCEEEEEET-------TEEEEEEEEC----CCTTGGGTTTTEEEEEEEEETTCTTT
T ss_pred CCCHHHHHHHHhcCCcCccCCcCccceEEEEEC-------CEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCCHHH
Confidence 689999886654221 2233444334444444 6899999999999988888899999999999999986644
Q ss_pred hhHH-HHHHHHH----HcCCCcEEEEECCcchh
Q psy2609 80 AQTQ-VALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~-~~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
.... ..+.... ..++|+++|+||+|+..
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~ 133 (183)
T 1moz_A 101 MSTASKELHLMLQEEELQDAALLVFANKQDQPG 133 (183)
T ss_dssp HHHHHHHHHHHTTSSTTSSCEEEEEEECTTSTT
T ss_pred HHHHHHHHHHHHcChhhCCCeEEEEEECCCCCC
Confidence 3322 2222222 25789999999999965
No 144
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=99.38 E-value=7.6e-14 Score=102.44 Aligned_cols=100 Identities=17% Similarity=0.013 Sum_probs=68.4
Q ss_pred ccccccccCCchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+.... ...-|+......+.+. ..++.+|||||++++...+..+++.+|++++|+|+++..+
T Consensus 32 ~~GKssli~~l~~~~~~~~~~t~~~~~~~~~~~-------~~~~~~~Dt~G~~~~~~~~~~~~~~~d~ii~v~d~~~~~s 104 (189)
T 2x77_A 32 NAGKTSILYRLHLGDVVTTVPTVGVNLETLQYK-------NISFEVWDLGGQTGVRPYWRCYFSDTDAVIYVVDSTDRDR 104 (189)
T ss_dssp TSSHHHHHHHTCCSCCEEECSSTTCCEEEEEET-------TEEEEEEEECCSSSSCCCCSSSSTTCCEEEEEEETTCCTT
T ss_pred CCCHHHHHHHHHcCCCCCcCCCCceEEEEEEEC-------CEEEEEEECCCCHhHHHHHHHHhhcCCEEEEEEeCCCHHH
Confidence 689999875552111 1122333333444444 7899999999999988888888999999999999987644
Q ss_pred hhHH-HHHHHHHH----cCCCcEEEEECCcchhh
Q psy2609 80 AQTQ-VALKQAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~~-~~~~~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
.... ..+..... .++|+++|+||+|+...
T Consensus 105 ~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 138 (189)
T 2x77_A 105 MGVAKHELYALLDEDELRKSLLLIFANKQDLPDA 138 (189)
T ss_dssp HHHHHHHHHHHHTCSTTTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHhhhhcCCCeEEEEEECCCCcCC
Confidence 3322 22222222 47899999999999753
No 145
>3r7w_B Gtpase2, GTP-binding protein GTR2; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_B*
Probab=99.37 E-value=8.2e-13 Score=106.64 Aligned_cols=98 Identities=15% Similarity=0.195 Sum_probs=67.0
Q ss_pred ccccccccC----CchhHH--HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH---HHHHHHHhcCEEEEEE
Q psy2609 2 LCMVSSYMD----SRKDEQ--ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS---EVSTAVRLCDGTIIVV 72 (161)
Q Consensus 2 ~~g~~~~~D----~~~~E~--~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~---~~~~~l~~~d~~ilVv 72 (161)
.+|||.++. .+..+. ..+.|+......+ . ..+++.+|||||+++|.. .+..++++++++|+|+
T Consensus 9 gvGKTSLl~~~~~~~~~~~~~~~~~Tig~~~~~v--~------~~v~LqIWDTAGQErf~~~~l~~~~yyr~a~~~IlV~ 80 (331)
T 3r7w_B 9 RCGKSSICKVVFHNMQPLDTLYLESTSNPSLEHF--S------TLIDLAVMELPGQLNYFEPSYDSERLFKSVGALVYVI 80 (331)
T ss_dssp TSSTTHHHHHHHSCCCSGGGTTCCCCCSCCCEEE--C------SSSCEEEEECCSCSSSCCCSHHHHHHHTTCSEEEEEC
T ss_pred CCCHHHHHHHHHcCCCCCccceecCeeeeeeEEE--c------cEEEEEEEECCCchhccchhhhhhhhccCCCEEEEEE
Confidence 589999873 332221 2345555444433 2 257999999999999964 5789999999999999
Q ss_pred eCCCCCChhHHHHH----HHHH--HcCCCcEEEEECCcchhh
Q psy2609 73 DCVEGICAQTQVAL----KQAW--LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 73 d~~~~~~~~~~~~~----~~~~--~~~~p~ilv~NK~Dl~~~ 108 (161)
|+++. .......| ..+. ..++|+++|+||+|+...
T Consensus 81 Ditd~-~~~~~~~l~~~l~~~~~~~~~ipillvgNK~DL~~~ 121 (331)
T 3r7w_B 81 DSQDE-YINAITNLAMIIEYAYKVNPSINIEVLIHKVDGLSE 121 (331)
T ss_dssp CCSSC-TTHHHHHHHHHHHHHHHHCTTCEEEEECCCCCSSCS
T ss_pred ECCch-HHHHHHHHHHHHHHHhhcCCCCcEEEEEECcccCch
Confidence 99976 22232222 2111 247899999999999753
No 146
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=99.37 E-value=5.9e-13 Score=103.04 Aligned_cols=98 Identities=16% Similarity=-0.001 Sum_probs=69.8
Q ss_pred ccccccccCCchhHH------HcC-CccccceEEEEeecCCCCCCceeEEEEeCCCchhh-----------HHHHHHHHH
Q psy2609 2 LCMVSSYMDSRKDEQ------ERG-ITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF-----------SSEVSTAVR 63 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~g-iti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~-----------~~~~~~~l~ 63 (161)
+||||++++.+.... .++ +|+......+.+. +.++.||||||+.++ ...+..+++
T Consensus 32 g~GKStl~n~l~~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~i~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~ 104 (260)
T 2xtp_A 32 GTGKSAAGNSILRKQAFESKLGSQTLTKTCSKSQGSWG-------NREIVIIDTPDMFSWKDHCEALYKEVQRCYLLSAP 104 (260)
T ss_dssp TSCHHHHHHHHHTSCCSCCCTTSCCCCCSCEEEEEEET-------TEEEEEEECCGGGGSSCCCHHHHHHHHHHHHHHTT
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCceeeeeEEEEEEeC-------CCEEEEEECcCCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 689999987664332 222 5555554555555 679999999998654 334455778
Q ss_pred hcCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCcEEEEE-CCcchh
Q psy2609 64 LCDGTIIVVDCVEGICAQTQVALKQAWLE-----KIQPILVLN-KIDRLI 107 (161)
Q Consensus 64 ~~d~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~ilv~N-K~Dl~~ 107 (161)
.+|++|+|+|++. +......++..+... +.|.++++| |+|+..
T Consensus 105 ~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~i~vv~nK~Dl~~ 153 (260)
T 2xtp_A 105 GPHVLLLVTQLGR-YTSQDQQAAQRVKEIFGEDAMGHTIVLFTHKEDLNG 153 (260)
T ss_dssp CCSEEEEEEETTC-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred CCcEEEEEEeCCC-CCHHHHHHHHHHHHHhCchhhccEEEEEEcccccCC
Confidence 8999999999985 666666666666553 578888777 999964
No 147
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=99.37 E-value=8.9e-13 Score=98.84 Aligned_cols=101 Identities=18% Similarity=0.198 Sum_probs=65.9
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHh----cCEEEEEEeCC-C
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRL----CDGTIIVVDCV-E 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~----~d~~ilVvd~~-~ 76 (161)
++|||+++..+....-.. ++.....+.... .....+.+|||||++++...+..+++. +|++|+|+|++ .
T Consensus 22 g~GKTsl~~~l~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~D~~~~ 95 (218)
T 1nrj_B 22 NSGKTSLLTLLTTDSVRP-TVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD 95 (218)
T ss_dssp TSSHHHHHHHHHHSSCCC-BCCCSSCEEETT-----GGGSSCEEEECCCCGGGTHHHHHHHHHHGGGEEEEEEEEETTSC
T ss_pred CCCHHHHHHHHhcCCCCC-eeeecCceEEEE-----eeCceEEEEECCCcHHHHHHHHHHHHhccccCCEEEEEEECCCC
Confidence 589999987765443111 110011111111 125689999999999999999999988 89999999998 3
Q ss_pred --CCChhHHHHHHHHH------HcCCCcEEEEECCcchhh
Q psy2609 77 --GICAQTQVALKQAW------LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 --~~~~~~~~~~~~~~------~~~~p~ilv~NK~Dl~~~ 108 (161)
........+...+. ..++|+++|+||+|+...
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~ 135 (218)
T 1nrj_B 96 PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTA 135 (218)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTC
T ss_pred hHHHHHHHHHHHHHHhcccccccCCCCEEEEEEchHhccc
Confidence 22222222222222 148999999999999754
No 148
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=99.37 E-value=7.5e-13 Score=102.46 Aligned_cols=98 Identities=17% Similarity=0.055 Sum_probs=69.2
Q ss_pred ccccccccCCchhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCc--------hhhHHHHHHHH----
Q psy2609 2 LCMVSSYMDSRKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH--------VDFSSEVSTAV---- 62 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~--------~~~~~~~~~~l---- 62 (161)
++|||++++.+.... ..|+|.......+.+. +.++.||||||+ +++...+..++
T Consensus 31 g~GKSSlin~l~~~~~~~~~~~~~~~T~~~~~~~~~~~-------~~~i~liDTPG~~~~~~~~~~~~~~~i~~~~~~~~ 103 (247)
T 3lxw_A 31 GAGKSATGNSILGQRRFFSRLGATSVTRACTTGSRRWD-------KCHVEVVDTPDIFSSQVSKTDPGCEERGHCYLLSA 103 (247)
T ss_dssp TSSHHHHHHHHHTSCCC---------CCSCEEEEEEET-------TEEEEEEECCSCSSTTHHHHSTTSHHHHHHHHHHT
T ss_pred CCcHHHHHHHHhCCCCccccCCCCCccccEEEEEEEEC-------CcEEEEEECCCCCCCCCCcHHHHHHHHHHHHHhcC
Confidence 789999986654322 1245555555555555 779999999997 55666666665
Q ss_pred HhcCEEEEEEeCCCCCChhHHHHHHHHHHc------CCCcEEEEECCcchh
Q psy2609 63 RLCDGTIIVVDCVEGICAQTQVALKQAWLE------KIQPILVLNKIDRLI 107 (161)
Q Consensus 63 ~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~------~~p~ilv~NK~Dl~~ 107 (161)
+.+|++|+|+|++. ....+..+++.+... +.|+|+|+||+|+..
T Consensus 104 ~~~d~il~V~d~~~-~~~~~~~~~~~l~~~~~~~~~~~~iilv~nK~Dl~~ 153 (247)
T 3lxw_A 104 PGPHALLLVTQLGR-FTAQDQQAVRQVRDMFGEDVLKWMVIVFTRKEDLAG 153 (247)
T ss_dssp TCCSEEEEEEETTB-CCHHHHHHHHHHHHHHCGGGGGGEEEEEECGGGGTT
T ss_pred CCCCEEEEEEeCCC-CCHHHHHHHHHHHHHhChhhhccEEEEEEchHhcCC
Confidence 88999999999984 556666666655543 789999999999954
No 149
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=2.3e-13 Score=101.64 Aligned_cols=101 Identities=12% Similarity=0.006 Sum_probs=66.7
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.. +..+.++.... ..+.+. +..+.+.+|||||++++...+..+++.+|++++|+|++.
T Consensus 35 ~~GKSsli~~l~~~~~~~~~~~t~~~~~~-~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 108 (207)
T 2fv8_A 35 ACGKTCLLIVFSKDEFPEVYVPTVFENYV-ADIEVD-----GKQVELALWDTAGQEDYDRLRPLSYPDTDVILMCFSVDS 108 (207)
T ss_dssp TSSHHHHHHHHHHSSCC-------CCEEE-EEEEET-----TEEEEEEEEECTTCTTCTTTGGGGCTTCCEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCcCCCcccceEE-EEEEEC-----CEEEEEEEEECCCcHHHHHHHHhhcCCCCEEEEEEECCC
Confidence 6899999865543 22333322211 222333 446789999999999998888889999999999999985
Q ss_pred CCChhHH--HHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 77 GICAQTQ--VALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
..+.... .+...+... ++|+++|+||+|+...
T Consensus 109 ~~s~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 144 (207)
T 2fv8_A 109 PDSLENIPEKWVPEVKHFCPNVPIILVANKKDLRSD 144 (207)
T ss_dssp HHHHHHHHHTHHHHHHHHSTTCCEEEEEECGGGGGC
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCEEEEEEchhhhcc
Confidence 4322222 223333332 8999999999999754
No 150
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=99.36 E-value=1e-12 Score=97.10 Aligned_cols=100 Identities=15% Similarity=0.070 Sum_probs=65.9
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+.... ...+.+. +..+.+.+|||||+++ ...+..+++.+|++++|+|+++
T Consensus 38 ~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~l~Dt~G~~~-~~~~~~~~~~~d~iilv~D~~~ 110 (196)
T 2atv_A 38 GVGKSALVVRFLTKRFIWEYDPTLESTY-RHQATID-----DEVVSMEILDTAGQED-TIQREGHMRWGEGFVLVYDITD 110 (196)
T ss_dssp TSSHHHHHHHHHHSCCCSCCCTTCCEEE-EEEEEET-----TEEEEEEEEECCCCCC-CHHHHHHHHHCSEEEEEEETTC
T ss_pred CCCHHHHHHHHHhCCCCcccCCCCCceE-EEEEEEC-----CEEEEEEEEECCCCCc-ccchhhhhccCCEEEEEEECcC
Confidence 689999986664332 22222111 1122233 4468899999999988 7778899999999999999985
Q ss_pred CCChhH-HHHHHHH----HHcCCCcEEEEECCcchhh
Q psy2609 77 GICAQT-QVALKQA----WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~-~~~~~~~----~~~~~p~ilv~NK~Dl~~~ 108 (161)
..+... ..++..+ ...++|+++|+||+|+...
T Consensus 111 ~~s~~~~~~~~~~i~~~~~~~~~piilv~NK~Dl~~~ 147 (196)
T 2atv_A 111 RGSFEEVLPLKNILDEIKKPKNVTLILVGNKADLDHS 147 (196)
T ss_dssp HHHHHTHHHHHHHHHHHHTTSCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHhhCCCCCcEEEEEECcccccc
Confidence 322111 1122222 2358999999999999753
No 151
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=99.36 E-value=1.9e-13 Score=100.10 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=67.9
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+.... ...+.+. +..+++.+|||||+++|......+++.+|++++|+|+++
T Consensus 17 ~vGKSsli~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~~~ 90 (184)
T 1m7b_A 17 QCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-----TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR 90 (184)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEECS-----SCEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeE-EEEEEEC-----CEEEEEEEEECCCChhhhhhHHhhcCCCcEEEEEEECCC
Confidence 689999987665432 22221111 1122223 557899999999999998888889999999999999986
Q ss_pred CCChhHH-H-HHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-V-ALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~-~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+.... . +...+.. .++|+++|+||+|+..
T Consensus 91 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 125 (184)
T 1m7b_A 91 PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 125 (184)
T ss_dssp HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEEcchhhc
Confidence 4333222 1 2222322 4789999999999974
No 152
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=99.34 E-value=2.5e-13 Score=101.95 Aligned_cols=100 Identities=12% Similarity=0.047 Sum_probs=68.1
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+.... ...+.+. +..+++.||||||+++|......+++.+|++|+|+|+++
T Consensus 38 ~vGKSsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~~~~~~~~~d~~ilv~D~~~ 111 (205)
T 1gwn_A 38 QCGKTALLHVFAKDCFPENYVPTVFENY-TASFEID-----TQRIELSLWDTSGSPYYDNVRPLSYPDSDAVLICFDISR 111 (205)
T ss_dssp TSSHHHHHHHHHHSCCCSSCCCCSEEEE-EEEEESS-----SSEEEEEEEEECCSGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCcCCccceeE-EEEEEEC-----CEEEEEEEEeCCCcHhhhHHHHhhccCCCEEEEEEECCC
Confidence 689999986665432 22222111 1122222 457899999999999998888889999999999999986
Q ss_pred CCChhHH--HHHHHHHH--cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ--VALKQAWL--EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~--~~~~~~~~--~~~p~ilv~NK~Dl~~ 107 (161)
..+.... .+...+.. .++|+++|+||+|+..
T Consensus 112 ~~s~~~~~~~~~~~i~~~~~~~piilv~nK~Dl~~ 146 (205)
T 1gwn_A 112 PETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRT 146 (205)
T ss_dssp HHHHHHHHHTHHHHHHHHCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCEEEEEechhhcc
Confidence 4332222 12222322 3789999999999974
No 153
>3o47_A ADP-ribosylation factor GTPase-activating protein ribosylation factor 1; structural genomics consortium, GTPase activation; HET: GDP; 2.80A {Homo sapiens}
Probab=99.34 E-value=5.7e-13 Score=107.33 Aligned_cols=100 Identities=14% Similarity=0.020 Sum_probs=64.7
Q ss_pred ccccccccCCchhHHH--cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQE--RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~--~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
++|||++++.+....- ..-|+......+.+. .+++.||||||+++|...+..+++.+|++|+|+|+++...
T Consensus 175 ~vGKSsLl~~l~~~~~~~~~pT~~~~~~~~~~~-------~~~l~i~Dt~G~~~~~~~~~~~~~~ad~vilV~D~~~~~s 247 (329)
T 3o47_A 175 AAGKTTILYKLKLGEIVTTIPTIGFNVETVEYK-------NISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRER 247 (329)
T ss_dssp TSSHHHHHHHTCSSCCEEEEEETTEEEEEEEET-------TEEEEEEECC-----CCSHHHHHTTEEEEEEEEETTCSSS
T ss_pred CccHHHHHHHHhCCCCCCcccccceEEEEEecC-------cEEEEEEECCCCHhHHHHHHHHhccCCEEEEEEECCchHH
Confidence 6899998866643220 011333333334333 7899999999999999999999999999999999986544
Q ss_pred hhHH--HHHHHHHH---cCCCcEEEEECCcchhh
Q psy2609 80 AQTQ--VALKQAWL---EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 80 ~~~~--~~~~~~~~---~~~p~ilv~NK~Dl~~~ 108 (161)
.... .+...+.. .++|+++|+||+|+...
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~piilV~NK~Dl~~~ 281 (329)
T 3o47_A 248 VNEAREELMRMLAEDELRDAVLLVFANKQDLPNA 281 (329)
T ss_dssp HHHHHHHHHHHHTCGGGTTCEEEEEEECTTSTTC
T ss_pred HHHHHHHHHHHHhhhccCCCeEEEEEECccCCcc
Confidence 3322 22222222 38899999999999754
No 154
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=99.33 E-value=8.4e-13 Score=95.66 Aligned_cols=94 Identities=15% Similarity=0.030 Sum_probs=61.1
Q ss_pred ccccccccCCchhHH----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC
Q psy2609 2 LCMVSSYMDSRKDEQ----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~ 77 (161)
++|||+++..+.... .+.+... ....+.+. +..+++.+|||||+++ ..+++.+|++++|+|+++.
T Consensus 17 ~vGKTsli~~l~~~~~~~~~~t~~~~-~~~~~~~~-----~~~~~l~i~Dt~G~~~-----~~~~~~~d~~ilv~D~~~~ 85 (178)
T 2iwr_A 17 RSGKSSLIHRFLTGSYQVLEKTESEQ-YKKEMLVD-----GQTHLVLIREEAGAPD-----AKFSGWADAVIFVFSLEDE 85 (178)
T ss_dssp GGCHHHHHHHHHHSCCCCCSSCSSSE-EEEEEEET-----TEEEEEEEEECSSSCC-----HHHHHHCSEEEEEEETTCH
T ss_pred CCCHHHHHHHHHhCCCCCcCCCccee-EEEEEEEC-----CEEEEEEEEECCCCch-----hHHHHhCCEEEEEEECcCH
Confidence 689999986654322 1222111 11223333 4467899999999987 4688999999999999864
Q ss_pred CChhHHHHH-HHHHH------cCCCcEEEEECCcch
Q psy2609 78 ICAQTQVAL-KQAWL------EKIQPILVLNKIDRL 106 (161)
Q Consensus 78 ~~~~~~~~~-~~~~~------~~~p~ilv~NK~Dl~ 106 (161)
.+......| .++.. .++|+++|+||+|+.
T Consensus 86 ~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~ 121 (178)
T 2iwr_A 86 NSFQAVSRLHGQLSSLRGEGRGGLALALVGTQDRIS 121 (178)
T ss_dssp HHHHHHHHHHHHHHHHHCSSSCCCEEEEEEECTTCB
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCEEEEEECcccc
Confidence 433333222 12221 378999999999995
No 155
>1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1
Probab=99.32 E-value=1.6e-12 Score=108.34 Aligned_cols=100 Identities=19% Similarity=0.189 Sum_probs=72.5
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHH------------HHHHHH
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE------------VSTAVR 63 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~------------~~~~l~ 63 (161)
+||||++++.+..+. .+|+|.+.....+.+. +..+.+|||||+.++... ...+++
T Consensus 190 gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~-------g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i~ 262 (439)
T 1mky_A 190 NVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFID-------GRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSIE 262 (439)
T ss_dssp TSSHHHHHHHHHTSTTEEECCCC------CCEEEEET-------TEEEEESSCSCC-----------CCSCCHHHHHHHH
T ss_pred CCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEEC-------CEEEEEEECCCCccccccchhhHHHHHHHHHHHHHh
Confidence 789999988776543 3577877776777776 568999999998654322 356889
Q ss_pred hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 64 LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 64 ~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+|++++|+|++.+...++..+...+...++|+++|+||+|+...
T Consensus 263 ~ad~vllv~d~~~~~~~~~~~i~~~l~~~~~~~ilv~NK~Dl~~~ 307 (439)
T 1mky_A 263 KADVVVIVLDATQGITRQDQRMAGLMERRGRASVVVFNKWDLVVH 307 (439)
T ss_dssp HCSEEEEEEETTTCCCHHHHHHHHHHHHTTCEEEEEEECGGGSTT
T ss_pred hCCEEEEEEeCCCCCCHHHHHHHHHHHHcCCCEEEEEECccCCCc
Confidence 999999999999888877777777777789999999999999753
No 156
>2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8
Probab=99.32 E-value=2.7e-13 Score=102.84 Aligned_cols=101 Identities=18% Similarity=0.022 Sum_probs=64.6
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-hHHHHHHHHHhcCEEEEEEeC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-FSSEVSTAVRLCDGTIIVVDC 74 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-~~~~~~~~l~~~d~~ilVvd~ 74 (161)
++|||+++..+..+. .+.++.+.....+.+. +..+++.+|||+|.+. +......+++.+|++|+|+|.
T Consensus 47 ~vGKSSLl~r~~~~~~~~~~~~~~~g~d~~~~~i~~~-----~~~~~l~~~Dt~g~~~~~~~l~~~~~~~a~~~ilVydv 121 (211)
T 2g3y_A 47 GVGKSTLANIFAGVHDSMDSDCEVLGEDTYERTLMVD-----GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI 121 (211)
T ss_dssp TSSHHHHHHHHHCCCCTTCCC---CCTTEEEEEEEET-----TEEEEEEEECCTTTTHHHHHHHHCCCCCCSEEEEEEET
T ss_pred CCCHHHHHHHHHhCCCCCCCcCCccceeeEEEEEEEC-----CeeeEEEEeecCCCcchhhhHHHHHHhhCCEEEEEEEC
Confidence 689999987664221 1123333223334444 4567899999999987 444556667889999999999
Q ss_pred CCCCChhHHH-HHHHHH----HcCCCcEEEEECCcchh
Q psy2609 75 VEGICAQTQV-ALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 75 ~~~~~~~~~~-~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
++.-+..... ++..+. ..++|+|+|+||+|+..
T Consensus 122 t~~~sf~~~~~~~~~l~~~~~~~~~piilVgNK~DL~~ 159 (211)
T 2g3y_A 122 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 159 (211)
T ss_dssp TCHHHHHHHHHHHHHHHTSGGGTTSCEEEEEECTTCGG
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCcEEEEEEChHHhc
Confidence 8533322222 222222 23799999999999975
No 157
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=99.32 E-value=1.1e-12 Score=96.48 Aligned_cols=100 Identities=11% Similarity=0.015 Sum_probs=62.3
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||++++.+.... .+.+.... ...+.+. +..+.+.||||||++++... ..+++.+|++++|+|+++
T Consensus 31 ~vGKTsLi~~l~~~~~~~~~~~t~~~~~-~~~~~~~-----~~~~~l~i~Dt~G~~~~~~~-~~~~~~~~~~ilv~d~~~ 103 (187)
T 3c5c_A 31 GAGKSALTVKFLTKRFISEYDPNLEDTY-SSEETVD-----HQPVHLRVMDTADLDTPRNC-ERYLNWAHAFLVVYSVDS 103 (187)
T ss_dssp TSSHHHHHHHHHHSSCCSCCCTTCCEEE-EEEEEET-----TEEEEEEEEECCC---CCCT-HHHHTTCSEEEEEEETTC
T ss_pred CCcHHHHHHHHHhCCCCcccCCCcccee-eEEEEEC-----CEEEEEEEEECCCCCcchhH-HHHHhhCCEEEEEEECCC
Confidence 689999986664332 22221111 1122223 45788999999999987654 678999999999999985
Q ss_pred CCChhHHH-HHHHHHH------cCCCcEEEEECCcchhh
Q psy2609 77 GICAQTQV-ALKQAWL------EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 77 ~~~~~~~~-~~~~~~~------~~~p~ilv~NK~Dl~~~ 108 (161)
..+..... ++..+.. .++|+++|+||+|+...
T Consensus 104 ~~s~~~~~~~~~~i~~~~~~~~~~~piilv~nK~Dl~~~ 142 (187)
T 3c5c_A 104 RQSFDSSSSYLELLALHAKETQRSIPALLLGNKLDMAQY 142 (187)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECGGGGGG
T ss_pred HHHHHHHHHHHHHHHHHhhccCCCCCEEEEEECcchhhc
Confidence 43322222 2222222 48999999999999653
No 158
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=99.31 E-value=3e-13 Score=106.47 Aligned_cols=97 Identities=21% Similarity=0.125 Sum_probs=68.2
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH------HHHHHHHH--hcCEE
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS------SEVSTAVR--LCDGT 68 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~------~~~~~~l~--~~d~~ 68 (161)
|+|||++++.+... ..+|+|++.....+ . . ..++.+|||||++++. ..+..++. .+|++
T Consensus 13 nvGKSTL~n~L~g~~~~v~~~pg~tv~~~~~~~--~-----~-~~~l~l~DtpG~~~~~~~~~~e~v~~~~~~~~~~d~v 84 (272)
T 3b1v_A 13 NSGKTSLFNLITGHNQRVGNWPGVTVERKSGLV--K-----K-NKDLEIQDLPGIYSMSPYSPEAKVARDYLLSQRADSI 84 (272)
T ss_dssp TSSHHHHHHHHHCCCCCCCSSSCCCCSCEEEEC--T-----T-CTTEEEEECCCCSCSSCSSHHHHHHHHHHHTTCCSEE
T ss_pred CCCHHHHHHHHHCCCCcccCCCCCcEEEEEEEE--e-----c-CCeEEEEECCCcCccCCCChHHHHHHHHHhcCCCCEE
Confidence 78999998666432 23566766433322 2 3 5689999999998775 45667776 49999
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++|+|++.. .....+...+...++|+++|+||+|+...
T Consensus 85 i~V~D~t~~--e~~~~~~~~l~~~~~p~ilv~NK~Dl~~~ 122 (272)
T 3b1v_A 85 LNVVDATNL--ERNLYLTTQLIETGIPVTIALNMIDVLDG 122 (272)
T ss_dssp EEEEEGGGH--HHHHHHHHHHHHTCSCEEEEEECHHHHHH
T ss_pred EEEecCCch--HhHHHHHHHHHhcCCCEEEEEEChhhCCc
Confidence 999999752 22233334555579999999999999754
No 159
>3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A*
Probab=99.31 E-value=1e-11 Score=97.26 Aligned_cols=101 Identities=15% Similarity=0.192 Sum_probs=66.1
Q ss_pred ccccccccCC------chhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCch-------hhHHHH---
Q psy2609 2 LCMVSSYMDS------RKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV-------DFSSEV--- 58 (161)
Q Consensus 2 ~~g~~~~~D~------~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~-------~~~~~~--- 58 (161)
++|||++++. +..+. .++++++.....+.+. +...++.+|||||+. .+....
T Consensus 18 g~GKSTLin~L~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~-----~~~~~l~liDTpG~~d~~~~~~~~~~i~~~i 92 (274)
T 3t5d_A 18 GLGKSTLINSLFLTDLYSPEYPGPSHRIKKTVQVEQSKVLIKEG-----GVQLLLTIVDTPGFGDAVDNSNCWQPVIDYI 92 (274)
T ss_dssp TSSHHHHHHHHSSSCC---------------CCCEEEEEEECC-------CCEEEEEEECCCCSCCSCCTTTTHHHHHHH
T ss_pred CCCHHHHHHHHhCCCccccCCCCcccccCCceEEEEEEEEEecC-----CeEEEEEEEECCCccccccchhhHHHHHHHH
Confidence 6899999754 23333 4455554433333333 445799999999983 344444
Q ss_pred ----HHHHHh-------------cCEEEEEEeCC-CCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 59 ----STAVRL-------------CDGTIIVVDCV-EGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 59 ----~~~l~~-------------~d~~ilVvd~~-~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
..++.. +|+++++++.+ .+....+..+++.+.. ++|+|+|+||+|+...
T Consensus 93 ~~~~~~~l~~~~~~~r~~~~d~r~~~~l~~i~~~~~~~~~~d~~~l~~l~~-~~pvi~V~nK~D~~~~ 159 (274)
T 3t5d_A 93 DSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLHE-KVNIIPLIAKADTLTP 159 (274)
T ss_dssp HHHHHHHHHHHHSSCCCSCCCCCCCEEEEEECSCCSSCCHHHHHHHHHHTT-TSCEEEEESSGGGSCH
T ss_pred HHHHHHHHHhhcccccccccCCceeEEEEEecCCCCCCCHHHHHHHHHHhc-cCCEEEEEeccCCCCH
Confidence 666666 77889988665 4777778777777766 8999999999998754
No 160
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*
Probab=99.31 E-value=6.2e-13 Score=111.98 Aligned_cols=99 Identities=18% Similarity=0.100 Sum_probs=70.7
Q ss_pred ccccccccCCchhHHHc--CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCC
Q psy2609 2 LCMVSSYMDSRKDEQER--GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGIC 79 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~--giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~ 79 (161)
|+|||++++.+..+... .-|++.....+.+. .+++.||||||+++|...+..+++.+|++|+|+|+++..+
T Consensus 332 nvGKSsLl~~l~~~~~~~~~~T~~~~~~~~~~~-------~~~~~l~Dt~G~~~~~~~~~~~~~~ad~~i~V~D~~~~~s 404 (497)
T 3lvq_E 332 AAGKTTILYKLKLGQSVTTIPTVGFNVETVTYK-------NVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDR 404 (497)
T ss_dssp TSSHHHHHHHHHHSSCCCCCCCSSEEEEEEESS-------SCEEEEEEECCCGGGSGGGGGGGTTCCEEEEEEETTCGGG
T ss_pred CCCHHHHHHHHhcCCCCCcCCccceeEEEEEeC-------CEEEEEEECCCcHHHHHHHHHHhccCCEEEEEEECcchhH
Confidence 78999998777544311 12334333333333 7899999999999999999999999999999999987544
Q ss_pred hhHHH-HHHHHH----HcCCCcEEEEECCcchh
Q psy2609 80 AQTQV-ALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 80 ~~~~~-~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
..... .+..+. ..++|+|+|+||+|+..
T Consensus 405 ~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 437 (497)
T 3lvq_E 405 IDEARQELHRIINDREMRDAIILIFANKQDLPD 437 (497)
T ss_dssp HHHHHHHHHHHHTSGGGTTCEEEEEEECCSSSS
T ss_pred HHHHHHHHHHHhhhhhcCCCcEEEEEECCCCCc
Confidence 33322 222221 14799999999999964
No 161
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=99.30 E-value=4.3e-12 Score=96.27 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=61.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCc------hhh---HHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH------VDF---SSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~------~~~---~~~~~~~l~~~d~ 67 (161)
++|||++++.+.... .++.|.......+.+. ...+.||||||+ ++. ......++..+|+
T Consensus 39 ~vGKSsLin~l~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~~~~~~d~ 111 (228)
T 2qu8_A 39 NVGKSSFMNIVSRANVDVQSYSFTTKNLYVGHFDHK-------LNKYQIIDTPGLLDRAFENRNTIEMTTITALAHINGV 111 (228)
T ss_dssp TSSHHHHHHHHTTTCEEEECC-----CEEEEEEEET-------TEEEEEEECTTTTTSCGGGCCHHHHHHHHHHHTSSEE
T ss_pred CCCHHHHHHHHhCCCCccCCCCCcceeeeeeeeecC-------CCeEEEEECCCCcCcccchhhhHHHHHHHHhhccccE
Confidence 689999986664332 1223333222222222 578999999999 442 1223445778899
Q ss_pred EEEEEeCCCCCChh---HHHHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 68 TIIVVDCVEGICAQ---TQVALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 68 ~ilVvd~~~~~~~~---~~~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
+|+|+|+++..+.. ...++..+... ++|+++|+||+|+...
T Consensus 112 ~i~v~d~~~~~s~~~~~~~~~~~~l~~~~~~~piilv~nK~Dl~~~ 157 (228)
T 2qu8_A 112 ILFIIDISEQCGLTIKEQINLFYSIKSVFSNKSIVIGFNKIDKCNM 157 (228)
T ss_dssp EEEEEETTCTTSSCHHHHHHHHHHHHTCC-CCCEEEEEECGGGCC-
T ss_pred EEEEEecccccCcchHHHHHHHHHHHHhhcCCcEEEEEeCcccCCc
Confidence 99999998765432 22334444443 8999999999999753
No 162
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=99.29 E-value=8e-13 Score=111.17 Aligned_cols=98 Identities=21% Similarity=0.212 Sum_probs=67.7
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHH--------HHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE--------VSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~--------~~~~l~~~d~ 67 (161)
|||||++++.+..+. .+|+|.+.....+.+. +..+.+|||||+.++... +..+++.+|+
T Consensus 234 nvGKSSLln~L~~~~~a~v~~~~gtT~d~~~~~i~~~-------g~~v~liDT~G~~~~~~~ve~~gi~~~~~~~~~aD~ 306 (462)
T 3geh_A 234 NVGKSSLLNAWSQSDRAIVTDLPGTTRDVVESQLVVG-------GIPVQVLDTAGIRETSDQVEKIGVERSRQAANTADL 306 (462)
T ss_dssp TSSHHHHHHHHHHHHBSCCSCCTTCCHHHHHHEEEET-------TEEEEECC--------------------CCCCSCSE
T ss_pred CCCHHHHHHHHhCCCcccccCCCCeeEEEEEEEEEEC-------CEEEEEEECCccccchhHHHHHHHHHHhhhhhcCCE
Confidence 799999998886553 2577777665666665 678999999998765433 3335778999
Q ss_pred EEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 68 ~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+++|+|++.+.......++..+. ++|+++|+||+|+...
T Consensus 307 vl~VvD~s~~~~~~~~~i~~~l~--~~piivV~NK~Dl~~~ 345 (462)
T 3geh_A 307 VLLTIDAATGWTTGDQEIYEQVK--HRPLILVMNKIDLVEK 345 (462)
T ss_dssp EEEEEETTTCSCHHHHHHHHHHT--TSCEEEEEECTTSSCG
T ss_pred EEEEeccCCCCCHHHHHHHHhcc--CCcEEEEEECCCCCcc
Confidence 99999999888777766666553 4799999999999754
No 163
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus}
Probab=99.29 E-value=3e-12 Score=109.74 Aligned_cols=69 Identities=23% Similarity=0.246 Sum_probs=58.1
Q ss_pred eeEEEEeCCCchh-----------hHHHHHHHHHhcCEEEEEEeCCC-CCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 41 YLINLIDSPGHVD-----------FSSEVSTAVRLCDGTIIVVDCVE-GICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 41 ~~i~iiDTpG~~~-----------~~~~~~~~l~~~d~~ilVvd~~~-~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+++||||||+.+ |...+..++..+|++++|+|++. +.......++..+...+.|+++|+||+|+...
T Consensus 154 ~~l~lIDTPG~~~~~~~~~~~~~~f~~~~~~~l~~aD~il~VvDa~~~~~~~~~~~~l~~l~~~~~pvilVlNK~Dl~~~ 233 (550)
T 2qpt_A 154 ESISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVDLIILLFDAHKLEISDEFSEAIGALRGHEDKIRVVLNKADMVET 233 (550)
T ss_dssp HHCEEEECCCBCC-------CCSCHHHHHHHHHHHCSEEEEEEETTSCCCCHHHHHHHHHTTTCGGGEEEEEECGGGSCH
T ss_pred CCEEEEECcCCCCcchhHHHHHhhHHHHHHHHHHhCCEEEEEEeCCcCCCCHHHHHHHHHHHhcCCCEEEEEECCCccCH
Confidence 4799999999975 67788899999999999999987 46677777777776677899999999999754
Q ss_pred h
Q psy2609 109 E 109 (161)
Q Consensus 109 ~ 109 (161)
+
T Consensus 234 ~ 234 (550)
T 2qpt_A 234 Q 234 (550)
T ss_dssp H
T ss_pred H
Confidence 3
No 164
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=99.29 E-value=7.7e-13 Score=97.17 Aligned_cols=102 Identities=20% Similarity=0.164 Sum_probs=60.8
Q ss_pred ccccccccCCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHh----cCEEEEEEeCC-C
Q psy2609 2 LCMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRL----CDGTIIVVDCV-E 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~----~d~~ilVvd~~-~ 76 (161)
++|||++++.+....... ++.......... .....+.+|||||++++...+..+++. +|++++|+|++ .
T Consensus 58 g~GKSsll~~l~~~~~~~-~~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~ 131 (193)
T 2ged_A 58 NSGKTSLLTLLTTDSVRP-TVVSQEPLSAAD-----YDGSGVTLVDFPGHVKLRYKLSDYLKTRAKFVKGLIFMVDSTVD 131 (193)
T ss_dssp TSSHHHHHHHHHHSSCC-------------C-----CCCTTCSEEEETTCCBSSCCHHHHHHHHGGGEEEEEEEEETTCC
T ss_pred CCCHHHHHHHHhcCCCCc-ccccCCCceeee-----ecCCeEEEEECCCCchHHHHHHHHHHhhcccCCEEEEEEECCCC
Confidence 689999987665432110 100000111111 125689999999999887777777776 89999999998 2
Q ss_pred CCChhH-HHHH-HHHH------HcCCCcEEEEECCcchhhh
Q psy2609 77 GICAQT-QVAL-KQAW------LEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 77 ~~~~~~-~~~~-~~~~------~~~~p~ilv~NK~Dl~~~~ 109 (161)
...... ...+ .... ..++|+++|+||+|+....
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~~~ 172 (193)
T 2ged_A 132 PKKLTTTAEFLVDILSITESSCENGIDILIACNKSELFTAR 172 (193)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCCEEEEEECTTSTTCC
T ss_pred chhHHHHHHHHHHHHhhhhhccccCCCEEEEEEchHhcCCC
Confidence 211111 1111 1111 1389999999999997543
No 165
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=99.29 E-value=8.4e-13 Score=96.87 Aligned_cols=105 Identities=13% Similarity=0.066 Sum_probs=63.5
Q ss_pred ccccccccCCchh-------HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeC
Q psy2609 2 LCMVSSYMDSRKD-------EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDC 74 (161)
Q Consensus 2 ~~g~~~~~D~~~~-------E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~ 74 (161)
++|||+++..+.. +..++++++.....+.+. ...+..+.+.+|||||+++|......+++.++++++|+|.
T Consensus 12 gvGKStLl~~l~~~~~~~~~~~~~t~g~~~~~~~~~~~--~~~~~~~~~~i~Dt~G~~~~~~~~~~~~~~~~~~i~v~d~ 89 (184)
T 2zej_A 12 GSGKTTLLQQLMKTKKSDLGMQSATVGIDVKDWPIQIR--DKRKRDLVLNVWDFAGREEFYSTHPHFMTQRALYLAVYDL 89 (184)
T ss_dssp TSSHHHHHHHHTCC-----------CSEEEEEEEC-----------CEEEEEEECSHHHHHTTSHHHHHHSEEEEEEEEG
T ss_pred CCCHHHHHHHHhcCCCccCCCcceeccEEeEEeeeccc--cCCCCceEEEEEecCCCHHHHHhhHHHccCCcEEEEEEeC
Confidence 6899999755433 223333333222222111 0013467899999999999998889999999999999999
Q ss_pred CCCC-ChhH-HHHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 75 VEGI-CAQT-QVALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 75 ~~~~-~~~~-~~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
+++. +... ..++..+.. .++|+++|+||+|+...
T Consensus 90 ~~~~~s~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 127 (184)
T 2zej_A 90 SKGQAEVDAMKPWLFNIKARASSSPVILVGTHLDVSDE 127 (184)
T ss_dssp GGCHHHHHTHHHHHHHHHHHCTTCEEEEEEECGGGCCH
T ss_pred CcchhHHHHHHHHHHHHHhhCCCCcEEEEEECCCcccc
Confidence 8652 1111 122222222 37899999999998643
No 166
>2wkq_A NPH1-1, RAS-related C3 botulinum toxin substrate 1; transferase, cell adhesion, nucleotide-binding, protein engineering, RAS superfamily LOV2; HET: GTP FMN; 1.60A {Avena sativa} PDB: 2wkr_A* 2wkp_A*
Probab=99.28 E-value=6.5e-13 Score=105.28 Aligned_cols=100 Identities=14% Similarity=0.058 Sum_probs=68.2
Q ss_pred cccccccc-----CCchhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYM-----DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~-----D~~~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
++|||+++ +.+..+..+.+ .+.....+... +..+.+.+|||||++++...+..+++.+|++++|+|+++
T Consensus 165 ~~GKssli~~~~~~~~~~~~~~t~-~~~~~~~~~~~-----~~~~~~~l~Dt~G~~~~~~~~~~~~~~~d~~i~v~d~~~ 238 (332)
T 2wkq_A 165 AVGKTCLLISYTTNAFPGEYIPTV-FDNYSANVMVD-----GKPVNLGLWDTAGLEDYDRLRPLSYPQTDVFLICFSLVS 238 (332)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCS-EEEEEEEEEET-----TEEEEEEEEEECCCGGGTTTGGGGCTTCSEEEEEEETTC
T ss_pred CCChHHHHHHHHhCCCCcccCCcc-cceeEEEEEEC-----CEEEEEEEEeCCCchhhhHHHHHhccCCCEEEEEEeCCC
Confidence 68999998 44433333222 22222223333 446788899999999999888999999999999999986
Q ss_pred CCChhHHH--HHHHHHHc--CCCcEEEEECCcchh
Q psy2609 77 GICAQTQV--ALKQAWLE--KIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~~--~~~~~~~~--~~p~ilv~NK~Dl~~ 107 (161)
..+..... +...+... ++|+++|+||+|+..
T Consensus 239 ~~s~~~~~~~~~~~~~~~~~~~p~ilv~nK~Dl~~ 273 (332)
T 2wkq_A 239 PASFHHVRAKWYPEVRHHCPNTPIILVGTKLDLRD 273 (332)
T ss_dssp HHHHHHHHHTHHHHHHHHCTTSCEEEEEECHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhCCCCcEEEEEEchhccc
Confidence 54333321 22333332 899999999999965
No 167
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=99.25 E-value=1.2e-12 Score=97.01 Aligned_cols=101 Identities=18% Similarity=0.034 Sum_probs=63.9
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-hHHHHHHHHHhcCEEEEEEeC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-FSSEVSTAVRLCDGTIIVVDC 74 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-~~~~~~~~l~~~d~~ilVvd~ 74 (161)
++|||++++.+..+. ..+++.+.....+.+. +..+++.+|||+|.+. +......+++.+|++++|+|.
T Consensus 16 ~vGKSsL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~Dt~~~~~~~~~~~~~~~~~~~~~i~v~dv 90 (192)
T 2cjw_A 16 GVGKSTLANIFAGVHDSMDSDXEVLGEDTYERTLMVD-----GESATIILLDMWENKGENEWLHDHCMQVGDAYLIVYSI 90 (192)
T ss_dssp TSSHHHHHHHHHHHSCCC----GGGCTTEEEEEEEET-----TEEEEEEEECCCCC----CTTGGGHHHHCSEEEEEEET
T ss_pred CCCHHHHHHHHhcCcCCcCccccccceeEEEEEEEEC-----CeEEEEEEEEeccCcchhhhHHHhhcccCCEEEEEEEC
Confidence 689999987765321 1223333333344444 4577889999999865 333456788999999999999
Q ss_pred CCCCChhHHH-HHHHHH----HcCCCcEEEEECCcchh
Q psy2609 75 VEGICAQTQV-ALKQAW----LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 75 ~~~~~~~~~~-~~~~~~----~~~~p~ilv~NK~Dl~~ 107 (161)
++..+..... ++..+. ..++|+++|+||+|+..
T Consensus 91 ~~~~s~~~~~~~~~~l~~~~~~~~~piilV~NK~Dl~~ 128 (192)
T 2cjw_A 91 TDRASFEKASELRIQLRRARQTEDIPIILVGNKSDLVR 128 (192)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTTSCCCEEEEEECTTCGG
T ss_pred CCHHHHHHHHHHHHHHHHhhCCCCCeEEEEEechhhhc
Confidence 8543322222 222222 23789999999999964
No 168
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=99.25 E-value=1.7e-11 Score=93.70 Aligned_cols=99 Identities=18% Similarity=0.077 Sum_probs=62.3
Q ss_pred ccccccccCCchh-----HHHc--CCccccceEEEEeecCCCCCCceeEEEEeCCCch-----------hhHHHHHHHHH
Q psy2609 2 LCMVSSYMDSRKD-----EQER--GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV-----------DFSSEVSTAVR 63 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~--giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~-----------~~~~~~~~~l~ 63 (161)
++|||++++.+.. ...+ ++|.......+.+. +..+.+|||||+. .+......+++
T Consensus 39 g~GKStlin~l~g~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~i~liDTpG~~~~~~~~~~~~~~~~~~~~~~~~ 111 (239)
T 3lxx_A 39 GAGKSATGNSILGRKVFHSGTAAKSITKKCEKRSSSWK-------ETELVVVDTPGIFDTEVPNAETSKEIIRCILLTSP 111 (239)
T ss_dssp TSSHHHHHHHHHTSCCSCC-------CCSCEEEEEEET-------TEEEEEEECCSCC-----CHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHcCCCcCccCCCCCceeeeEEEEEEEeC-------CceEEEEECCCccCCCCCHHHHHHHHHHHHHhcCC
Confidence 6899998755432 2222 56666555556565 6799999999953 34444555566
Q ss_pred hcCEEEEEEeCCCCCChhHHHHHHHHH-----HcCCCcEEEEECCcchhh
Q psy2609 64 LCDGTIIVVDCVEGICAQTQVALKQAW-----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 64 ~~d~~ilVvd~~~~~~~~~~~~~~~~~-----~~~~p~ilv~NK~Dl~~~ 108 (161)
.+|++|+|+|++.... .....+..+. ....|+++|+||+|+...
T Consensus 112 ~~~~~l~v~d~~~~~~-~~~~~l~~~~~~~~~~~~~~~iiv~nK~D~~~~ 160 (239)
T 3lxx_A 112 GPHALLLVVPLGRYTE-EEHKATEKILKMFGERARSFMILIFTRKDDLGD 160 (239)
T ss_dssp CCSEEEEEEETTCCSS-HHHHHHHHHHHHHHHHHGGGEEEEEECGGGC--
T ss_pred CCcEEEEEeeCCCCCH-HHHHHHHHHHHHhhhhccceEEEEEeCCccCCc
Confidence 7899999999874333 3333333222 235699999999998754
No 169
>1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B*
Probab=99.23 E-value=4.5e-12 Score=100.40 Aligned_cols=69 Identities=19% Similarity=0.176 Sum_probs=54.4
Q ss_pred ceeEEEEeCCCchh-------------hHHHHHHHHHhcCEEEEEEeC-CCCCChhH-HHHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVD-------------FSSEVSTAVRLCDGTIIVVDC-VEGICAQT-QVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-------------~~~~~~~~l~~~d~~ilVvd~-~~~~~~~~-~~~~~~~~~~~~p~ilv~NK~D 104 (161)
..++.||||||+.+ +...+..+++.+|++++|+|+ ..+..... ..+++.+...++|+++|+||+|
T Consensus 130 ~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~iilvvd~~~~~~~~~~~~~i~~~~~~~~~~~i~v~NK~D 209 (315)
T 1jwy_B 130 VVNLTLVDLPGITKVPVGDQPTDIEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDPEGKRTIGVITKLD 209 (315)
T ss_dssp SCSEEEEECCCCC---------CSHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCSSCSSEEEEEECTT
T ss_pred CCCcEEEECCCCccCCCCCCchhHHHHHHHHHHHHHcCCCeEEEEEEecCcchhhhHHHHHHHHhCCCCCcEEEEEcCcc
Confidence 46899999999854 667788999999999999997 45554333 3566666667899999999999
Q ss_pred chhh
Q psy2609 105 RLIL 108 (161)
Q Consensus 105 l~~~ 108 (161)
+...
T Consensus 210 l~~~ 213 (315)
T 1jwy_B 210 LMDK 213 (315)
T ss_dssp SSCS
T ss_pred cCCc
Confidence 9753
No 170
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=99.23 E-value=9.6e-12 Score=96.76 Aligned_cols=99 Identities=19% Similarity=0.097 Sum_probs=63.9
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHH---------hcC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVR---------LCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~---------~~d 66 (161)
++|||++++.+..+. .++.|.......+.+. +..+.+|||||++++......+++ .+|
T Consensus 46 g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~l~liDTpG~~~~~~~~~~~~~~i~~~l~~~~~~ 118 (262)
T 3def_A 46 GVGKSSTVNSLIGEQVVRVSPFQAEGLRPVMVSRTMG-------GFTINIIDTPGLVEAGYVNHQALELIKGFLVNRTID 118 (262)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSCC-CCCCEEEEEEET-------TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEEC
T ss_pred CCCHHHHHHHHhCCCCcccCCCCCcceeeEEEEEEEC-------CeeEEEEECCCCCCcccchHHHHHHHHHHHhcCCCC
Confidence 689999987665433 2344555544555554 679999999999776433222222 689
Q ss_pred EEEEEEeCCC-CCChhHHHHHHHHHHc-----CCCcEEEEECCcchh
Q psy2609 67 GTIIVVDCVE-GICAQTQVALKQAWLE-----KIQPILVLNKIDRLI 107 (161)
Q Consensus 67 ~~ilVvd~~~-~~~~~~~~~~~~~~~~-----~~p~ilv~NK~Dl~~ 107 (161)
++++|++.+. ........++..+... ..|+++|+||+|+..
T Consensus 119 ~il~V~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~ivv~nK~Dl~~ 165 (262)
T 3def_A 119 VLLYVDRLDVYAVDELDKQVVIAITQTFGKEIWCKTLLVLTHAQFSP 165 (262)
T ss_dssp EEEEEEESSCSCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECTTCCC
T ss_pred EEEEEEcCCCCCCCHHHHHHHHHHHHHhchhhhcCEEEEEeCcccCC
Confidence 9999998864 3334444444444332 248899999999853
No 171
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=99.21 E-value=3.4e-11 Score=87.73 Aligned_cols=96 Identities=19% Similarity=0.194 Sum_probs=60.3
Q ss_pred ccccccccCCc-----hhHHHcCCccccceEEEEeecCCCCCCceeEEEEeCCC-----------chhhHHHHHHHHHh-
Q psy2609 2 LCMVSSYMDSR-----KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPG-----------HVDFSSEVSTAVRL- 64 (161)
Q Consensus 2 ~~g~~~~~D~~-----~~E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG-----------~~~~~~~~~~~l~~- 64 (161)
++|||++++.+ ..+..+|+|..... +.+. .+.+||||| ++++...+..+++.
T Consensus 11 ~~GKSsli~~l~~~~~~~~~~~~~t~~~~~--~~~~---------~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (190)
T 2cxx_A 11 NVGKSTLIYRLTGKKVRRGKRPGVTRKIIE--IEWK---------NHKIIDMPGFGFMMGLPKEVQERIKDEIVHFIEDN 79 (190)
T ss_dssp TSSHHHHHHHHHSCCCSSSSSTTCTTSCEE--EEET---------TEEEEECCCBSCCTTSCHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCcCCccCCCCCccceeEE--EecC---------CEEEEECCCccccccCCHHHHHHHHHHHHHHHHhh
Confidence 68999987544 33445566654322 2221 789999999 67788888888776
Q ss_pred cC---EEEEEEeCCCCC-----------ChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 65 CD---GTIIVVDCVEGI-----------CAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 65 ~d---~~ilVvd~~~~~-----------~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++ +++.|+|..... ...+..+...+...++|+++|+||+|+...
T Consensus 80 ~~~~~~v~~v~d~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~piilv~nK~Dl~~~ 137 (190)
T 2cxx_A 80 AKNIDVAVLVVDGKAAPEIIKRWEKRGEIPIDVEFYQFLRELDIPTIVAVNKLDKIKN 137 (190)
T ss_dssp GGGCCEEEEEEETTHHHHHHHHHHHTTCCCHHHHHHHHHHHTTCCEEEEEECGGGCSC
T ss_pred hccCCEEEEEEcchhhhhHHHhhhccCccHHHHHHHHHHHhcCCceEEEeehHhccCc
Confidence 55 555555553210 011122334445568999999999999753
No 172
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=99.20 E-value=6.3e-11 Score=92.42 Aligned_cols=100 Identities=15% Similarity=0.071 Sum_probs=63.4
Q ss_pred ccccccccCCchhHH------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH-------HHHHHHH--HhcC
Q psy2609 2 LCMVSSYMDSRKDEQ------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS-------SEVSTAV--RLCD 66 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~-------~~~~~~l--~~~d 66 (161)
++|||++++.+..+. .++.|.......+... ...+.+|||||+.++. ..+..++ +.+|
T Consensus 49 g~GKSSLin~l~~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~l~iiDTpG~~~~~~~~~~~~~~i~~~~~~~~~d 121 (270)
T 1h65_A 49 GVGKSSTVNSIIGERVVSISPFQSEGPRPVMVSRSRA-------GFTLNIIDTPGLIEGGYINDMALNIIKSFLLDKTID 121 (270)
T ss_dssp TSSHHHHHHHHHTSCCSCCCSSSCCCSSCEEEEEEET-------TEEEEEEECCCSEETTEECHHHHHHHHHHTTTCEEC
T ss_pred CCCHHHHHHHHhCCCcccccCCCCcceeeEEEEEeeC-------CeEEEEEECCCCCCCccchHHHHHHHHHHhhcCCCC
Confidence 689999987665433 2345544433333333 7899999999997653 1222222 2689
Q ss_pred EEEEEEeCCC-CCChhHHHHHHHHHHc-C----CCcEEEEECCcchhh
Q psy2609 67 GTIIVVDCVE-GICAQTQVALKQAWLE-K----IQPILVLNKIDRLIL 108 (161)
Q Consensus 67 ~~ilVvd~~~-~~~~~~~~~~~~~~~~-~----~p~ilv~NK~Dl~~~ 108 (161)
++++|+|++. ........++..+... + +|+++|+||+|+...
T Consensus 122 ~il~v~~~d~~~~~~~~~~~~~~l~~~~~~~~~~~iivV~nK~Dl~~~ 169 (270)
T 1h65_A 122 VLLYVDRLDAYRVDNLDKLVAKAITDSFGKGIWNKAIVALTHAQFSPP 169 (270)
T ss_dssp EEEEEEESSCCCCCHHHHHHHHHHHHHHCGGGGGGEEEEEECCSCCCG
T ss_pred EEEEEEeCCCCcCCHHHHHHHHHHHHHhCcccccCEEEEEECcccCCc
Confidence 9999998864 3444444454444322 2 689999999998643
No 173
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=99.17 E-value=2e-11 Score=90.53 Aligned_cols=101 Identities=19% Similarity=0.126 Sum_probs=69.7
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
+||||+++..+.. +..+.++.+.....+.+. +..+++.+|||||++++...+..+++.++++++|+|.+.
T Consensus 15 g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-----g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 89 (199)
T 2f9l_A 15 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-----GKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYDIAK 89 (199)
T ss_dssp TSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEET-----TEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEEC-----CEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEECcC
Confidence 6899999865543 334555554444455555 456789999999999988888888999999999999985
Q ss_pred CCChhHH-HHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
....... .++..+.. .+.|+++|+||+|+..
T Consensus 90 ~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 124 (199)
T 2f9l_A 90 HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 124 (199)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECTTCGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCeEEEEEECccccc
Confidence 4332221 22222222 3688999999999964
No 174
>2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A*
Probab=99.15 E-value=3.8e-11 Score=94.20 Aligned_cols=69 Identities=17% Similarity=0.137 Sum_probs=54.7
Q ss_pred ceeEEEEeCCCch-------------hhHHHHHHHHHhcCEEE-EEEeCCCCCChhHH-HHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHV-------------DFSSEVSTAVRLCDGTI-IVVDCVEGICAQTQ-VALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~-------------~~~~~~~~~l~~~d~~i-lVvd~~~~~~~~~~-~~~~~~~~~~~p~ilv~NK~D 104 (161)
..++.||||||+. .+...+..+++.++.++ +|+|++.+...++. .+++.+...++|+++|+||+|
T Consensus 124 ~~~l~lvDtpG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~v~d~~~~~~~~~~~~~~~~~~~~~~~~i~V~NK~D 203 (299)
T 2aka_B 124 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 203 (299)
T ss_dssp CCSEEEEECCCBCSSCCSSSCTTHHHHHHHHHHHHHTSTTEEEEEEEESSSCGGGCHHHHHHHHHCTTCSSEEEEEECGG
T ss_pred CCCceEEeCCCCCCCcCCCCCchHHHHHHHHHHHHHcCCCeEEEEEecCCcchhhhHHHHHHHHhCCCCCeEEEEEEccc
Confidence 3689999999963 46677888999998777 69999887766654 456666567899999999999
Q ss_pred chhh
Q psy2609 105 RLIL 108 (161)
Q Consensus 105 l~~~ 108 (161)
+...
T Consensus 204 l~~~ 207 (299)
T 2aka_B 204 LMDE 207 (299)
T ss_dssp GSCT
T ss_pred cCCC
Confidence 9754
No 175
>3dpu_A RAB family protein; roccor, G-domain, COR, GTP-binding, nucleotide-binding, SIGN protein; 2.90A {Chlorobaculum tepidum}
Probab=99.11 E-value=2.1e-11 Score=103.84 Aligned_cols=102 Identities=16% Similarity=0.145 Sum_probs=67.4
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEE------eecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLY------YKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTII 70 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~------~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~il 70 (161)
+||||++++.+.... .+.+... ..+.. +.. ...+..+.+.+|||||++.+......+++.+|++|+
T Consensus 51 ~vGKSSLl~~l~~~~~~~~~~~t~g~~--~~~~~~~~~~~v~~-~~~~~~~~~~i~Dt~G~e~~~~~~~~~l~~~d~ii~ 127 (535)
T 3dpu_A 51 MAGKTSLLKQLIGETFDPKESQTHGLN--VVTKQAPNIKGLEN-DDELKECLFHFWDFGGQEIMHASHQFFMTRSSVYML 127 (535)
T ss_dssp CSSHHHHHHHHHC-----------CCC--EEEEEGGGSGGGTT-CSTTTTCEEEEECCCSCCTTTTTCHHHHHSSEEEEE
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceE--EEEeccccccceee-cCCCceEEEEEEECCcHHHHHHHHHHHccCCcEEEE
Confidence 789999987665433 2222222 12111 000 012446899999999999999888899999999999
Q ss_pred EEeCCCCCChhHHHHHHHHHHc--CCCcEEEEECCcchhh
Q psy2609 71 VVDCVEGICAQTQVALKQAWLE--KIQPILVLNKIDRLIL 108 (161)
Q Consensus 71 Vvd~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~Dl~~~ 108 (161)
|+|++.. .....++..+... ++|+|+|+||+|+...
T Consensus 128 V~D~s~~--~~~~~~~~~l~~~~~~~pvilV~NK~Dl~~~ 165 (535)
T 3dpu_A 128 LLDSRTD--SNKHYWLRHIEKYGGKSPVIVVMNKIDENPS 165 (535)
T ss_dssp EECGGGG--GGHHHHHHHHHHHSSSCCEEEEECCTTTCTT
T ss_pred EEeCCCc--hhHHHHHHHHHHhCCCCCEEEEEECCCcccc
Confidence 9999753 3334444445443 5999999999999753
No 176
>1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8
Probab=99.09 E-value=5.6e-11 Score=96.40 Aligned_cols=101 Identities=12% Similarity=0.025 Sum_probs=65.8
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
|||||++++.+...+ .+..|.......+.+. ....+.+|||||+.+ +.......+..+|++|
T Consensus 168 nvGKSTLln~L~~~~~~i~~~~ftTl~p~~g~v~~~------~~~~~~l~DtPG~i~~a~~~~~l~~~fl~~i~~~d~ll 241 (342)
T 1lnz_A 168 SVGKSTLLSVVSSAKPKIADYHFTTLVPNLGMVETD------DGRSFVMADLPGLIEGAHQGVGLGHQFLRHIERTRVIV 241 (342)
T ss_dssp TSSHHHHHHHSEEECCEESSTTSSCCCCCEEEEECS------SSCEEEEEEHHHHHHHTTCTTTTHHHHHHHHHHCCEEE
T ss_pred CCCHHHHHHHHHcCCCccccCCccccCceEEEEEeC------CCceEEEecCCCCcccccccchhHHHHHHHHHhccEEE
Confidence 799999987665332 2345555554444443 136899999999743 3344445566799999
Q ss_pred EEEeCCC---CCChhH-HHHHHHHHH-----cCCCcEEEEECCcchhh
Q psy2609 70 IVVDCVE---GICAQT-QVALKQAWL-----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 70 lVvd~~~---~~~~~~-~~~~~~~~~-----~~~p~ilv~NK~Dl~~~ 108 (161)
+|+|++. ...... ..+...+.. .++|+++|+||+|+...
T Consensus 242 ~VvD~s~~~~~~~~~~~~~~~~eL~~~~~~l~~~p~ilV~NK~Dl~~~ 289 (342)
T 1lnz_A 242 HVIDMSGLEGRDPYDDYLTINQELSEYNLRLTERPQIIVANKMDMPEA 289 (342)
T ss_dssp EEEESSCSSCCCHHHHHHHHHHHHHHSCSSTTTSCBCBEEECTTSTTH
T ss_pred EEEECCcccccChHHHHHHHHHHHHHhhhhhcCCCEEEEEECccCCCC
Confidence 9999975 222222 223333333 37899999999999753
No 177
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=99.07 E-value=4e-10 Score=92.01 Aligned_cols=98 Identities=19% Similarity=0.202 Sum_probs=62.8
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCc---------hhhHHHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGH---------VDFSSEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~---------~~~~~~~~~~l~~~d~ 67 (161)
|||||++++.+.. +..++.|++.....+.+. +..+.+|||||+ +.|. .+...+..+|+
T Consensus 189 naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~-------g~~v~l~DT~G~i~~lp~~lve~f~-~tl~~~~~aD~ 260 (364)
T 2qtf_A 189 NSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPIN-------NRKIMLVDTVGFIRGIPPQIVDAFF-VTLSEAKYSDA 260 (364)
T ss_dssp TSSHHHHHHHHHCC-----------CCSCEEEEEET-------TEEEEEEECCCBCSSCCGGGHHHHH-HHHHGGGGSSE
T ss_pred CCCHHHHHHHHHCCCccccCCcccccCCEEEEEEEC-------CEEEEEEeCCCchhcCCHHHHHHHH-HHHHHHHhCCE
Confidence 7999999865542 334577777766667666 468999999997 2233 34456788999
Q ss_pred EEEEEeCCCCC--ChhHH-HHHHHHH---HcCCCcEEEEECCcchh
Q psy2609 68 TIIVVDCVEGI--CAQTQ-VALKQAW---LEKIQPILVLNKIDRLI 107 (161)
Q Consensus 68 ~ilVvd~~~~~--~~~~~-~~~~~~~---~~~~p~ilv~NK~Dl~~ 107 (161)
+++|+|+++.. ..... .+...+. ..++|+++|+||+|+..
T Consensus 261 il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~ 306 (364)
T 2qtf_A 261 LILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKIN 306 (364)
T ss_dssp EEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCC
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCC
Confidence 99999997653 11111 1122222 25789999999999864
No 178
>4fid_A G protein alpha subunit; RAS-like domain, all-helical domain, GTP binding, nucleotide signaling protein, transducer, lipoprotein; HET: MLY MSE GDP; 2.62A {Entamoeba histolytica}
Probab=99.06 E-value=1.5e-10 Score=93.88 Aligned_cols=83 Identities=18% Similarity=0.161 Sum_probs=59.6
Q ss_pred CCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC---------CCC--hhHHHHHH
Q psy2609 19 GITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE---------GIC--AQTQVALK 87 (161)
Q Consensus 19 giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~---------~~~--~~~~~~~~ 87 (161)
..|+......+.+. .+.+.+|||+|++++...+..++++++++|+|+|.++ ... ......+.
T Consensus 146 ~~TiGi~~~~~~~~-------~v~l~iwDtaGQe~~R~~w~~yy~~a~~iIfV~diS~ydq~l~e~~~~nr~~es~~~~~ 218 (340)
T 4fid_A 146 TKTTGIHEYDFVVK-------DIPFHLIDVGGQRSERKXWVSFFSDVDCAIFVTSLAEYDMKLYEDGNTSRLTESIAVFK 218 (340)
T ss_dssp CCCCSCEEEEEESS-------SCEEEEEECCSCHHHHHHHHTTSCSCSEEEEEEEGGGTTCBCC--CCSBHHHHHHHHHH
T ss_pred cceeeeEEEEEEee-------eeeeccccCCCcccccccHHHHhccCCEEEEEEECCccccccccccccchHHHHHHHHH
Confidence 34455444455444 7899999999999999999999999999999999971 111 11122233
Q ss_pred HHHH----cCCCcEEEEECCcchhh
Q psy2609 88 QAWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 88 ~~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
.+.. .++|++|++||+|+...
T Consensus 219 ~i~~~~~~~~~piiLv~NK~DL~~e 243 (340)
T 4fid_A 219 DIMTNEFLKGAVKLIFLNKMDLFEE 243 (340)
T ss_dssp HHHHCGGGTTSEEEEEEECHHHHHH
T ss_pred HHhhhhccCCCeEEEEEECchhhhh
Confidence 2222 47899999999999754
No 179
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=99.04 E-value=6.9e-10 Score=82.37 Aligned_cols=97 Identities=18% Similarity=0.185 Sum_probs=64.3
Q ss_pred ccccccccCCchhHH-------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCch----------hhHHHHHHHH--
Q psy2609 2 LCMVSSYMDSRKDEQ-------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV----------DFSSEVSTAV-- 62 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~----------~~~~~~~~~l-- 62 (161)
+||||++++.+.... ..|.+... ..+.+. . .+.+|||||+. .+......++
T Consensus 36 g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~--~~~~~~-------~-~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~~ 105 (210)
T 1pui_A 36 NAGKSSALNTLTNQKSLARTSKTPGRTQLI--NLFEVA-------D-GKRLVDLPGYGYAEVPEEMKRKWQRALGEYLEK 105 (210)
T ss_dssp TSSHHHHHTTTCCC-------------CCE--EEEEEE-------T-TEEEEECCCCC------CCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhCCCccccccCCCccceee--EEEEec-------C-CEEEEECcCCcccccCHHHHHHHHHHHHHHHHh
Confidence 689999998775432 33444321 122222 2 67899999984 3444445555
Q ss_pred -HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 63 -RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 63 -~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+.++++++|+|++.+.......+..++...++|+++|+||+|+...
T Consensus 106 ~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~~~~~v~nK~D~~s~ 152 (210)
T 1pui_A 106 RQSLQGLVVLMDIRHPLKDLDQQMIEWAVDSNIAVLVLLTKADKLAS 152 (210)
T ss_dssp CTTEEEEEEEEETTSCCCHHHHHHHHHHHHTTCCEEEEEECGGGSCH
T ss_pred hhcccEEEEEEECCCCCchhHHHHHHHHHHcCCCeEEEEecccCCCc
Confidence 4688999999998877665555666666778999999999998754
No 180
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A {Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Probab=99.03 E-value=2e-10 Score=100.84 Aligned_cols=68 Identities=18% Similarity=0.173 Sum_probs=55.0
Q ss_pred eeEEEEeCCCchh---hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHH-HHHHcCCCcEEEEECCcchhh
Q psy2609 41 YLINLIDSPGHVD---FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALK-QAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 41 ~~i~iiDTpG~~~---~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
..+.||||||+.+ ....+..+++.+|++|+|+|++.+....+...+. .+...+.|+++|+||+|+...
T Consensus 174 ~~l~LiDTPGl~~~~~~~~~~~~~i~~aD~vL~Vvda~~~~s~~e~~~l~~~l~~~~~~iiiVlNK~Dl~~~ 245 (695)
T 2j69_A 174 KGIEIVDSPGLNDTEARNELSLGYVNNCHAILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQVRE 245 (695)
T ss_dssp TTEEEEECCCHHHHHTCHHHHTHHHHSSSEEEEEEETTSTTCHHHHHHHHHHTTTSCCCEEEEEECGGGGGG
T ss_pred CCeEEEECCCCCchhhHHHHHHHHHHhCCEEEEEEeCCCccchhHHHHHHHHHHhhCCCEEEEEECcccccc
Confidence 4699999999765 4567888999999999999999887776665554 444457899999999999754
No 181
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=99.03 E-value=1.7e-10 Score=93.61 Aligned_cols=69 Identities=17% Similarity=0.162 Sum_probs=52.5
Q ss_pred ceeEEEEeCCCchhh-------------HHHHHHHHHhcCEEEEEEeCCC-CCC-hhHHHHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDF-------------SSEVSTAVRLCDGTIIVVDCVE-GIC-AQTQVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~-------------~~~~~~~l~~~d~~ilVvd~~~-~~~-~~~~~~~~~~~~~~~p~ilv~NK~D 104 (161)
...+.+|||||+.++ ...+..+++.+|++|+|+|+.. ... .....++..+...+.|+|+|+||+|
T Consensus 135 ~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~~~~~~~~~~~~~~l~~~~~~~~~~~i~V~nK~D 214 (360)
T 3t34_A 135 VVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAISPANQDLATSDAIKISREVDPSGDRTFGVLTKID 214 (360)
T ss_dssp SCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEEETTSCGGGCHHHHHHHHSCTTCTTEEEEEECGG
T ss_pred CCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEeecccCCcCCHHHHHHHHHhcccCCCEEEEEeCCc
Confidence 457999999998876 7788999999999999998643 222 2334455555556889999999999
Q ss_pred chhh
Q psy2609 105 RLIL 108 (161)
Q Consensus 105 l~~~ 108 (161)
+...
T Consensus 215 l~~~ 218 (360)
T 3t34_A 215 LMDK 218 (360)
T ss_dssp GCCT
T ss_pred cCCC
Confidence 9753
No 182
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit); GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus} SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A* 1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A* 1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A* 1as0_A* 1as2_A* 1as3_A* ...
Probab=99.00 E-value=1.6e-10 Score=94.08 Aligned_cols=82 Identities=15% Similarity=0.067 Sum_probs=59.1
Q ss_pred CccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC---------C--hhHHHHHHH
Q psy2609 20 ITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI---------C--AQTQVALKQ 88 (161)
Q Consensus 20 iti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~---------~--~~~~~~~~~ 88 (161)
.|+......+.+. .+.+.+|||+|++++...+..++++++++|+|+|.++.- . .....++..
T Consensus 179 ~T~Gi~~~~~~~~-------~~~l~iwDt~GQe~~r~~w~~yf~~a~~iIfV~dls~~d~~l~ed~~~nr~~e~~~~~~~ 251 (353)
T 1cip_A 179 KTTGIVETHFTFK-------DLHFKMFDVGGQRSERKKWIHCFEGVTAIIFCVALSDYDLVLAEDEEMNRMHESMKLFDS 251 (353)
T ss_dssp CCCSEEEEEEEET-------TEEEEEEEECCSGGGGGGGGGGCTTCSEEEEEEEGGGGGCEETTEEEEEHHHHHHHHHHH
T ss_pred ceeceEEEEEeeC-------CeeEEEEeCCCchhhhHHHHHHHhcCCEEEEEEECccccccccccchhhhHHHHHHHHHH
Confidence 3444444445444 789999999999999999999999999999999998521 1 111222222
Q ss_pred HHH----cCCCcEEEEECCcchhh
Q psy2609 89 AWL----EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 89 ~~~----~~~p~ilv~NK~Dl~~~ 108 (161)
+.. .++|+|||+||+|+...
T Consensus 252 i~~~~~~~~~piiLv~NK~DL~~~ 275 (353)
T 1cip_A 252 ICNNKWFTDTSIILFLNKKDLFEE 275 (353)
T ss_dssp HHTCGGGTTSEEEEEEECHHHHHH
T ss_pred HHcCccccCCcEEEEEECcCchhh
Confidence 222 47899999999999643
No 183
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=99.00 E-value=1.2e-10 Score=86.08 Aligned_cols=101 Identities=18% Similarity=0.111 Sum_probs=68.8
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~ 76 (161)
+||||+++..+... ..+.++.+.....+.+. +..+.+.+|||||++++...+..+++.++++++|+|...
T Consensus 39 g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~-----g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d~~~ 113 (191)
T 1oix_A 39 GVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVD-----GKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYDIAK 113 (191)
T ss_dssp TSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEET-----TEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEETTC
T ss_pred CCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEEC-----CEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEECcC
Confidence 68999998655433 23344444344455555 446778899999999988888889999999999999875
Q ss_pred CCChhHH-HHHHHHHH---cCCCcEEEEECCcchh
Q psy2609 77 GICAQTQ-VALKQAWL---EKIQPILVLNKIDRLI 107 (161)
Q Consensus 77 ~~~~~~~-~~~~~~~~---~~~p~ilv~NK~Dl~~ 107 (161)
....... .++..+.. .+.|+++++||+|+..
T Consensus 114 ~~s~~~~~~~~~~~~~~~~~~~~i~~v~nK~Dl~~ 148 (191)
T 1oix_A 114 HLTYENVERWLKELRDHADSNIVIMLVGNKSDLRH 148 (191)
T ss_dssp HHHHHTHHHHHHHHHHHSCTTCEEEEEEECGGGGG
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcEEEEEECccccc
Confidence 4322111 12222222 3678999999999964
No 184
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A {Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A* 3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C* 1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C* 3maa_C* 1cul_C* 3sn6_A*
Probab=98.97 E-value=5.7e-10 Score=92.26 Aligned_cols=69 Identities=25% Similarity=0.219 Sum_probs=53.3
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCC----------CCChhH-HHHHHHHHH----cCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE----------GICAQT-QVALKQAWL----EKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~----------~~~~~~-~~~~~~~~~----~~~p~ilv~NK~D 104 (161)
.+.+.+|||+|++++...+..++++++++|+|+|.++ .-+... ..++..+.. .++|++||+||+|
T Consensus 216 ~v~l~iwDtaGQe~~r~~w~~yf~~a~~iIfV~dis~ydq~l~ed~~~ns~~e~~~~~~~i~~~~~~~~~piiLvgNK~D 295 (402)
T 1azs_C 216 KVNFHMFDVGGQRDERRKWIQCFNDVTAIIFVVASSSYNMVIREDNQTNRLQEALNLFKSIWNNRWLRTISVILFLNKQD 295 (402)
T ss_dssp TEEEEEEEECCSGGGGGGGGGGTTTCCEEEEEEETTGGGCBCTTTSCSBHHHHHHHHHHHHHTCTTCSSCCEEEEEECHH
T ss_pred CccceecccchhhhhhhhhHhhccCCCEEEEEEECcccccccccccccchHHHHHHHHHHHHhcccCCCCeEEEEEEChh
Confidence 6899999999999999999999999999999999985 111111 222332222 3689999999999
Q ss_pred chhh
Q psy2609 105 RLIL 108 (161)
Q Consensus 105 l~~~ 108 (161)
+...
T Consensus 296 L~~~ 299 (402)
T 1azs_C 296 LLAE 299 (402)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9654
No 185
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF hand, TIM barrel, C2 domain, GTPase, lipase, C binding, GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q* 2rgn_A* 3ah8_A*
Probab=98.95 E-value=5.6e-10 Score=90.02 Aligned_cols=83 Identities=14% Similarity=0.121 Sum_probs=58.7
Q ss_pred CccccceEEEEeecCCCCCCceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC-------CCCCh----hHHHHHHH
Q psy2609 20 ITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV-------EGICA----QTQVALKQ 88 (161)
Q Consensus 20 iti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~-------~~~~~----~~~~~~~~ 88 (161)
-|+......+.+. .+++.+|||+|++++...+..++++++++|+|+|.+ +.... .....+..
T Consensus 153 ~TiGi~~~~~~~~-------~v~l~iwDtgGQe~~R~~w~~yf~~~~~iIfV~dls~ydq~l~d~~~~nr~~es~~~~~~ 225 (327)
T 3ohm_A 153 PTTGIIEYPFDLQ-------SVIFRMVDVGGQRSERRKWIHCFENVTSIMFLVALSEYDQVLVESDNENRMEESKALFRT 225 (327)
T ss_dssp CCCSEEEEEEEET-------TEEEEEEEECCSHHHHTTGGGGCSSCSEEEEEEEGGGGGCBCSSCTTSBHHHHHHHHHHH
T ss_pred ceeeEEEEEEEee-------ceeeEEEEcCCchhHHHHHHHHhCCCCEEEEEEECccccccccccccHhHHHHHHHHHHH
Confidence 3444444445444 789999999999999999999999999999999765 21111 11222332
Q ss_pred HHH----cCCCcEEEEECCcchhhh
Q psy2609 89 AWL----EKIQPILVLNKIDRLILE 109 (161)
Q Consensus 89 ~~~----~~~p~ilv~NK~Dl~~~~ 109 (161)
+.. .++|++|++||+|+....
T Consensus 226 i~~~~~~~~~~iiL~~NK~DL~~~k 250 (327)
T 3ohm_A 226 IITYPWFQNSSVILFLNKKDLLEEK 250 (327)
T ss_dssp HHTSGGGTTCEEEEEEECHHHHHHH
T ss_pred HhhhhccCCceEEEEEECchhhhhh
Confidence 222 478999999999997643
No 186
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=98.95 E-value=1.2e-09 Score=88.42 Aligned_cols=69 Identities=16% Similarity=0.127 Sum_probs=50.6
Q ss_pred ceeEEEEeCCCch-------------hhHHHHHHHHHhcC-EEEEEEeCCCCCChhHH-HHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHV-------------DFSSEVSTAVRLCD-GTIIVVDCVEGICAQTQ-VALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~-------------~~~~~~~~~l~~~d-~~ilVvd~~~~~~~~~~-~~~~~~~~~~~p~ilv~NK~D 104 (161)
..++.||||||+. .+...+..+++.++ ++++|+|+..++...+. .+++.+...+.|+++|+||+|
T Consensus 129 ~~~l~lvDTPG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iiL~v~~a~~~~~~~~~~~i~~~~~~~~~~~i~V~NK~D 208 (353)
T 2x2e_A 129 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKVAKEVDPQGQRTIGVITKLD 208 (353)
T ss_dssp CCSEEEEECCCBCSSCCTTCCTTHHHHHHHHHHHHHTSTTEEEEEEEETTSCGGGCHHHHHHHHHCTTCTTEEEEEECGG
T ss_pred CCCcEEEECCCCCCCccCCCchhHHHHHHHHHHHHHcCCCeEEEEEecCCCccchhHHHHHHHHhCcCCCceEEEecccc
Confidence 4689999999963 45667778887665 55557777766665554 356666667899999999999
Q ss_pred chhh
Q psy2609 105 RLIL 108 (161)
Q Consensus 105 l~~~ 108 (161)
+...
T Consensus 209 l~~~ 212 (353)
T 2x2e_A 209 LMDE 212 (353)
T ss_dssp GSCT
T ss_pred ccCc
Confidence 9743
No 187
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=98.93 E-value=3.6e-10 Score=92.29 Aligned_cols=69 Identities=16% Similarity=0.109 Sum_probs=46.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCC---------C-Ch-hHHHHHHHHHH----cCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEG---------I-CA-QTQVALKQAWL----EKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~---------~-~~-~~~~~~~~~~~----~~~p~ilv~NK~D 104 (161)
.+.+.+|||||++++...+..++++++++|+|+|.++- . +. ....++..+.. .++|+|||+||+|
T Consensus 200 ~~~l~i~Dt~Gq~~~r~~w~~~f~~~~~iIfv~dls~~dq~l~ed~~~n~~~es~~~~~~i~~~~~~~~~piILv~NK~D 279 (362)
T 1zcb_A 200 NVPFKMVDVGGQRSERKRWFECFDSVTSILFLVSSSEFDQVLMEDRQTNRLTESLNIFETIVNNRVFSNVSIILFLNKTD 279 (362)
T ss_dssp TEEEEEEEECC-------CTTSCTTCCEEEEEEETTCTTCEETTEEEEEHHHHHHHHHHHHHTCGGGTTSEEEEEEECHH
T ss_pred CeEEEEEeccchhhhhhhHHHHhCCCCEEEEEEECccccccccccccccHHHHHHHHHHHHhcchhhCCCCEEEEEEChh
Confidence 78999999999999999999999999999999999862 1 11 11222332222 4789999999999
Q ss_pred chhh
Q psy2609 105 RLIL 108 (161)
Q Consensus 105 l~~~ 108 (161)
+...
T Consensus 280 L~~~ 283 (362)
T 1zcb_A 280 LLEE 283 (362)
T ss_dssp HHHH
T ss_pred hhhh
Confidence 9753
No 188
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase, G-protein signaling, SELF-activation, RAS-like DO; HET: GSP; 2.34A {Arabidopsis thaliana}
Probab=98.89 E-value=4.6e-10 Score=91.42 Aligned_cols=70 Identities=17% Similarity=0.111 Sum_probs=51.0
Q ss_pred CceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC----------CCCCh-hHHHHHHHHH----HcCCCcEEEEECC
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV----------EGICA-QTQVALKQAW----LEKIQPILVLNKI 103 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~----------~~~~~-~~~~~~~~~~----~~~~p~ilv~NK~ 103 (161)
+.+.+.+|||+|++++...+..++++++++|+|+|.+ ..-+. ....++..+. ..++|++||+||+
T Consensus 181 ~~v~l~iwDtaGQe~~r~~~~~y~~~~~~iI~v~dis~ydq~l~e~~~~~s~~~~~~~~~~i~~~~~~~~~piiLvgNK~ 260 (354)
T 2xtz_A 181 SGEVYRLFDVGGQRNERRKWIHLFEGVTAVIFCAAISEYDQTLFEDEQKNRMMETKELFDWVLKQPCFEKTSFMLFLNKF 260 (354)
T ss_dssp ---EEEEEEECCSTTGGGGTGGGCTTEEEEEEEEEGGGTTCBCSSCTTSBHHHHHHHHHHHHHTCGGGSSCEEEEEEECH
T ss_pred cceeeEEEECCCchhhhHHHHHHhCCCCEEEEEEECcccccccccccchhHHHHHHHHHHHHHhccccCCCeEEEEEECc
Confidence 4789999999999999999999999999999999986 11111 1122232222 1478999999999
Q ss_pred cchhh
Q psy2609 104 DRLIL 108 (161)
Q Consensus 104 Dl~~~ 108 (161)
|+...
T Consensus 261 DL~~~ 265 (354)
T 2xtz_A 261 DIFEK 265 (354)
T ss_dssp HHHHH
T ss_pred chhhh
Confidence 99754
No 189
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=98.88 E-value=1.4e-09 Score=88.21 Aligned_cols=100 Identities=16% Similarity=0.074 Sum_probs=60.9
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhH---------HHHHHHHHhcCE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFS---------SEVSTAVRLCDG 67 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~---------~~~~~~l~~~d~ 67 (161)
++|||++++.+.... .++.|.......+.+. ...+.+|||||+.++. .........+|+
T Consensus 177 gvGKSTLin~L~~~~~~~~~~~~~t~~~~~~~~~~~-------~~~~~l~Dt~G~~~~~~~~~~~~~~~~~~~~~~~ad~ 249 (357)
T 2e87_A 177 NVGKSTLLKALTTAKPEIASYPFTTRGINVGQFEDG-------YFRYQIIDTPGLLDRPISERNEIEKQAILALRYLGNL 249 (357)
T ss_dssp TSSHHHHHHHHCSSCCEEECCTTCSSCEEEEEEEET-------TEEEEEEECTTTSSSCSTTSCHHHHHHHHGGGGTCSE
T ss_pred CCCHHHHHHHHhCCCCccCCCCCeeeceeEEEEEec-------CceEEEEeCCCccccchhhhhHHHHHHHHHHHhcCCE
Confidence 689999986654322 2344444333333332 5789999999985421 122223346899
Q ss_pred EEEEEeCCCCC--ChhH-HHHHHHHHH--cCCCcEEEEECCcchhh
Q psy2609 68 TIIVVDCVEGI--CAQT-QVALKQAWL--EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 68 ~ilVvd~~~~~--~~~~-~~~~~~~~~--~~~p~ilv~NK~Dl~~~ 108 (161)
+++|+|++... .... ..++..+.. .++|+++|+||+|+...
T Consensus 250 illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~~~ 295 (357)
T 2e87_A 250 IIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVADE 295 (357)
T ss_dssp EEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTCCH
T ss_pred EEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccCCh
Confidence 99999987543 3222 223333322 27999999999999754
No 190
>2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.87 E-value=9.8e-10 Score=89.50 Aligned_cols=68 Identities=19% Similarity=0.249 Sum_probs=40.2
Q ss_pred ceeEEEEeCCCc-------hhhHHHHH-------HHHHhcC-------------EEEEEEeC-CCCCChhHHHHHHHHHH
Q psy2609 40 EYLINLIDSPGH-------VDFSSEVS-------TAVRLCD-------------GTIIVVDC-VEGICAQTQVALKQAWL 91 (161)
Q Consensus 40 ~~~i~iiDTpG~-------~~~~~~~~-------~~l~~~d-------------~~ilVvd~-~~~~~~~~~~~~~~~~~ 91 (161)
...+.+|||||+ +.|...+. .+++.++ +++++++. ..++...+..++..+ .
T Consensus 94 ~~~l~i~DTpG~gd~~~~~e~~~~i~~~i~~~~~~yl~~~~~~~r~~~~d~rv~~~vy~I~~~~~~l~~~d~~~~~~l-~ 172 (361)
T 2qag_A 94 KLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI-H 172 (361)
T ss_dssp EEEEEEEC--------------CCTHHHHHHHHHHHHHHHTCSCCC-CCCCCCCEEEEEECSSSSSCCHHHHHHHHHT-C
T ss_pred ccceEEEEeccccccCccHHHHHHHHHHHHHHHHHHHHHhhhhccccccCCceEEEEEEEecCCCCcchhHHHHHHHh-c
Confidence 458999999999 55544444 7777654 46666654 345555555554444 3
Q ss_pred cCCCcEEEEECCcchhh
Q psy2609 92 EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 92 ~~~p~ilv~NK~Dl~~~ 108 (161)
.++|+|+|+||+|+...
T Consensus 173 ~~~piIlV~NK~Dl~~~ 189 (361)
T 2qag_A 173 NKVNIVPVIAKADTLTL 189 (361)
T ss_dssp S-SCEEEEEECCSSSCH
T ss_pred cCCCEEEEEECCCCCCH
Confidence 67999999999999754
No 191
>3c5h_A Glucocorticoid receptor DNA-binding factor 1; RAS, GTPase, glucorticoid receptor, structural genomics consortium, SGC, alternative splicing; HET: GNP; 1.80A {Homo sapiens}
Probab=98.86 E-value=2.8e-11 Score=93.83 Aligned_cols=44 Identities=25% Similarity=0.266 Sum_probs=29.6
Q ss_pred hcCEEEEEEeCCCC--CChhHH-HHHHHH----HHcCCCcEEEEECCcchh
Q psy2609 64 LCDGTIIVVDCVEG--ICAQTQ-VALKQA----WLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 64 ~~d~~ilVvd~~~~--~~~~~~-~~~~~~----~~~~~p~ilv~NK~Dl~~ 107 (161)
.+|++|+|+|+++. .+.... .++..+ ...++|+++|+||+|+..
T Consensus 162 ~ad~vilV~D~t~~~~~s~~~~~~~l~~i~~~~~~~~~piilV~NK~Dl~~ 212 (255)
T 3c5h_A 162 LVDGFLLGIDVSRGMNRNFDDQLKFVSNLYNQLAKTKKPIVVVLTKCDEGV 212 (255)
T ss_dssp ECCEEEEEEECBC----CHHHHHHHHHHHHHHHHHTTCCEEEEEECGGGBC
T ss_pred cCCEEEEEEECCCCchhhHHHHHHHHHHHHHHhccCCCCEEEEEEcccccc
Confidence 69999999999875 333222 222222 235799999999999864
No 192
>1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2
Probab=98.84 E-value=1e-09 Score=90.51 Aligned_cols=76 Identities=14% Similarity=0.098 Sum_probs=38.6
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCC----------C------CC-CceeEEEEeCCCchhhH----
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNK----------D------TP-EEYLINLIDSPGHVDFS---- 55 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~----------~------~~-~~~~i~iiDTpG~~~~~---- 55 (161)
|+|||++++.+.... .++.|++.......+.... + .+ +..++.||||||+.+..
T Consensus 10 nvGKSTL~n~L~~~~~~~~~~p~tT~~~~~g~~~~~~~~~~~~l~~~~~p~~~~~~~~~~~~~i~lvDtpG~~~~a~~~~ 89 (397)
T 1wxq_A 10 NVGKSTFFSAATLVDVEIANYPFTTIEANVGVTYAITDHPCKELGCSPNPQNYEYRNGLALIPVKMVDVAGLVPGAHEGR 89 (397)
T ss_dssp TSSHHHHHHHHHC--------------CCEEEEEEEEECSCSSSCCSCCCSSSCEETTEEEEEEEEEECC----------
T ss_pred CCCHHHHHHHHHCCCCcccCCCCcccCCceEEEeeccCCchHHhhhhcccccccccCCcceEEEEEEECCCcccchhhhh
Confidence 799999987765443 3445655444332221000 0 01 13689999999986421
Q ss_pred HH---HHHHHHhcCEEEEEEeCCCC
Q psy2609 56 SE---VSTAVRLCDGTIIVVDCVEG 77 (161)
Q Consensus 56 ~~---~~~~l~~~d~~ilVvd~~~~ 77 (161)
.. ...+++.+|++++|+|++++
T Consensus 90 ~l~~~~l~~i~~aD~il~VvD~~~~ 114 (397)
T 1wxq_A 90 GLGNKFLDDLRMASALIHVVDATGK 114 (397)
T ss_dssp -----CCCSSTTCSEEEEEEETTCC
T ss_pred hHHHHHHHHHhcCCEEEEEEecccc
Confidence 11 22456889999999999865
No 193
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=98.62 E-value=1.7e-09 Score=85.91 Aligned_cols=65 Identities=17% Similarity=0.032 Sum_probs=51.6
Q ss_pred eEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCC-ChhH-HHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGI-CAQT-QVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~-~~~~-~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++.+||| +++|...+..+++++|++|+|+|+++.. .... ..++..+...++|+++|+||+|+...
T Consensus 64 ~~~iwD~--qer~~~l~~~~~~~ad~vilV~D~~~~~~s~~~l~~~l~~~~~~~~piilv~NK~DL~~~ 130 (301)
T 1u0l_A 64 SGVIENV--LHRKNLLTKPHVANVDQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLYDE 130 (301)
T ss_dssp SEEEEEE--CCCSCEETTTTEESCCEEEEEECSSTTCCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred eEEEEEE--ccccceeeccccccCCEEEEEEeCCCCCCCHHHHHHHHHHHHHCCCCEEEEEeHHHcCCc
Confidence 7999999 9999988999999999999999998654 3322 22333444568999999999999753
No 194
>4a9a_A Ribosome-interacting GTPase 1; DRG-DFRP complex, ribosome binding GTPase; 2.67A {Saccharomyces cerevisiae}
Probab=98.60 E-value=3.2e-08 Score=81.13 Aligned_cols=97 Identities=20% Similarity=0.248 Sum_probs=69.6
Q ss_pred ccccccccCCchh-----HHHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKD-----EQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~-----E~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
|+|||++++.+.. ..-++.|++.....+.+. +.++.|+||||..+ ........++.||+++
T Consensus 82 NvGKSTL~n~Lt~~~~~v~~~pftT~~~~~g~~~~~-------~~~i~l~D~pGl~~~a~~~~~~g~~~l~~i~~ad~il 154 (376)
T 4a9a_A 82 SVGKSTLLSKLTGTESEAAEYEFTTLVTVPGVIRYK-------GAKIQMLDLPGIIDGAKDGRGRGKQVIAVARTCNLLF 154 (376)
T ss_dssp CHHHHHHHHHHHSBCCCGGGTCSSCCCEEEEEEEET-------TEEEEEEECGGGCCC-----CHHHHHHHHHHHCSEEE
T ss_pred CCCHHHHHHHHhCCCCcccCCCCceeeeeeEEEEeC-------CcEEEEEeCCCccCCchhhhHHHHHHHHHHHhcCccc
Confidence 7999999866542 345688888777777776 78999999999743 3456778889999999
Q ss_pred EEEeCCCCCChhHHHHHHHHHH-----cCCCcEEEEECCcch
Q psy2609 70 IVVDCVEGICAQTQVALKQAWL-----EKIQPILVLNKIDRL 106 (161)
Q Consensus 70 lVvd~~~~~~~~~~~~~~~~~~-----~~~p~ilv~NK~Dl~ 106 (161)
+|+|+.++.... ..+...+.. .+.|.++++||+|..
T Consensus 155 ~vvD~~~p~~~~-~~i~~EL~~~~~~l~~k~~~i~~nK~d~~ 195 (376)
T 4a9a_A 155 IILDVNKPLHHK-QIIEKELEGVGIRLNKTPPDILIKKKEKG 195 (376)
T ss_dssp EEEETTSHHHHH-HHHHHHHHHTTEEETCCCCCEEEEECSSS
T ss_pred cccccCccHHHH-HHHHHHHHHhhHhhccCChhhhhhHhhhh
Confidence 999998643221 122222222 367889999999974
No 195
>3zvr_A Dynamin-1; hydrolase, DRP1, DRP, endocytosis, mitochondrial fission, GT stalk, PH, BSE, membrane fission; HET: 1PE; 3.10A {Rattus norvegicus} PDB: 3snh_A
Probab=98.58 E-value=1.4e-07 Score=83.55 Aligned_cols=69 Identities=16% Similarity=0.097 Sum_probs=54.7
Q ss_pred ceeEEEEeCCCchh-------------hHHHHHHHHH-hcCEEEEEEeCCCCCChhHH-HHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVD-------------FSSEVSTAVR-LCDGTIIVVDCVEGICAQTQ-VALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-------------~~~~~~~~l~-~~d~~ilVvd~~~~~~~~~~-~~~~~~~~~~~p~ilv~NK~D 104 (161)
..++.|+||||..+ +...+..++. .+|++++|+|++.++..++. .++..+...+.|+|+|+||+|
T Consensus 149 ~~qL~LVDTPGi~~~~~~~qp~di~~~i~~lv~~yi~~~aDlIL~VVDAs~~~~~~d~l~ll~~L~~~g~pvIlVlNKiD 228 (772)
T 3zvr_A 149 VLNLTLVDLPGMTKVPVGDQPPDIEFQIRDMLMQFVTKENCLILAVSPANSDLANSDALKIAKEVDPQGQRTIGVITKLD 228 (772)
T ss_dssp CCSEEEEECCCCCCCCSSCCCCHHHHHHHHHHHHHHTSTTEEEEEEEETTSCSSSCHHHHHHHHHCTTCSSEEEEEECTT
T ss_pred CCceEEEECCCcccCCCCCCcHHHHHHHHHHHHHHHhcCCcEEEEEEcCCCCcchhHHHHHHHHHHhcCCCEEEEEeCcc
Confidence 45899999999643 3445566664 68999999999988777666 677777777899999999999
Q ss_pred chhh
Q psy2609 105 RLIL 108 (161)
Q Consensus 105 l~~~ 108 (161)
+...
T Consensus 229 lv~~ 232 (772)
T 3zvr_A 229 LMDE 232 (772)
T ss_dssp SSCT
T ss_pred cCCc
Confidence 9754
No 196
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=98.38 E-value=4.7e-07 Score=69.31 Aligned_cols=68 Identities=21% Similarity=0.067 Sum_probs=45.4
Q ss_pred ceeEEEEeCCCchhhHHH------HHHHHHhcCEEEEEEeCCCCCChhHHHH-----HHHHHHcCCCcEEEEECCcchhh
Q psy2609 40 EYLINLIDSPGHVDFSSE------VSTAVRLCDGTIIVVDCVEGICAQTQVA-----LKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~------~~~~l~~~d~~ilVvd~~~~~~~~~~~~-----~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.++||||||+.++... ...++.. +++++|+|+........... .......++|+++|+||+|+...
T Consensus 108 ~~d~iiiDtpG~~~~~~~~~l~~~~~~~~~~-~~iv~vvD~~~~~~~~~~~~~~~~~~~~~~~~~~p~~iv~NK~D~~~~ 186 (262)
T 1yrb_A 108 ENDYVLIDTPGQMETFLFHEFGVRLMENLPY-PLVVYISDPEILKKPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSE 186 (262)
T ss_dssp HCSEEEEECCSSHHHHHHSHHHHHHHHTSSS-CEEEEEECGGGCCSHHHHHHHHHHHHHHHHHHTSCEEEEECCGGGCCH
T ss_pred cCCEEEEeCCCccchhhhhhhHHHHHHHHhh-ceEEeccchhhhcCHHHHHHHHHHHHHHhcccCCCeEEEEeccccccc
Confidence 358999999999765432 2234455 78888999875554443221 12223457999999999998643
No 197
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=98.33 E-value=8.1e-08 Score=77.79 Aligned_cols=61 Identities=16% Similarity=0.158 Sum_probs=38.3
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLI 107 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~ 107 (161)
++.+.|+||||..... ......+|++++|+|+..+...+. +.. .....|.++|+||+|+..
T Consensus 166 ~~~~iliDT~Gi~~~~---~~l~~~~d~vl~V~d~~~~~~~~~--i~~--~il~~~~ivVlNK~Dl~~ 226 (349)
T 2www_A 166 GYDIILIETVGVGQSE---FAVADMVDMFVLLLPPAGGDELQG--IKR--GIIEMADLVAVTKSDGDL 226 (349)
T ss_dssp TCSEEEEECCCC--CH---HHHHTTCSEEEEEECCC----------------CCSCSEEEECCCSGGG
T ss_pred CCCEEEEECCCcchhh---hhHHhhCCEEEEEEcCCcchhHHH--hHH--HHHhcCCEEEEeeecCCC
Confidence 5789999999974321 334678999999999976532211 111 113579999999999964
No 198
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=98.32 E-value=2.9e-07 Score=74.18 Aligned_cols=62 Identities=23% Similarity=0.170 Sum_probs=41.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++.++||||||+.++... ..+.+|++++|+|+..+...+... . ...++|.++|+||+|+...
T Consensus 148 ~~~i~liDTpG~~~~~~~---~~~~aD~vl~Vvd~~~~~~~~~l~--~--~~~~~p~ivv~NK~Dl~~~ 209 (341)
T 2p67_A 148 GYDVVIVETVGVGQSETE---VARMVDCFISLQIAGGGDDLQGIK--K--GLMEVADLIVINKDDGDNH 209 (341)
T ss_dssp TCSEEEEEEECCTTHHHH---HHTTCSEEEEEECC------CCCC--H--HHHHHCSEEEECCCCTTCH
T ss_pred CCCEEEEeCCCccchHHH---HHHhCCEEEEEEeCCccHHHHHHH--H--hhhcccCEEEEECCCCCCh
Confidence 578999999998765543 468999999999987543211110 0 1125789999999999653
No 199
>1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2
Probab=98.27 E-value=7e-07 Score=72.86 Aligned_cols=75 Identities=17% Similarity=0.130 Sum_probs=49.5
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCC---------C-CCCceeEEEEeCCCchhhHH-------HHH
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNK---------D-TPEEYLINLIDSPGHVDFSS-------EVS 59 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~---------~-~~~~~~i~iiDTpG~~~~~~-------~~~ 59 (161)
|+|||++++.+... ..++.|++.....+.+.... + .....++.||||||+.++.. ...
T Consensus 12 nvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~~r~~~l~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~gl~~~fl 91 (363)
T 1jal_A 12 NVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPDPRLDALAEIVKPERILPTTMEFVDIAGLVAGASKGEGLGNKFL 91 (363)
T ss_dssp TSSHHHHHHHHHHTC------CCCCCCCCSSEEECCCHHHHHHHHHHCCSEEECCEEEEEECCSCCTTHHHHGGGTCCHH
T ss_pred CCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCCcccceeeeeecccceeeeEEEEEECCCCcccccccchHHHHHH
Confidence 79999998777542 33456776655545443100 0 00015799999999987542 245
Q ss_pred HHHHhcCEEEEEEeCCC
Q psy2609 60 TAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 60 ~~l~~~d~~ilVvd~~~ 76 (161)
.+++.+|++++|+|+++
T Consensus 92 ~~ir~ad~il~VvD~~~ 108 (363)
T 1jal_A 92 ANIRETDAIGHVVRCFE 108 (363)
T ss_dssp HHHHTCSEEEEEEECSC
T ss_pred HHHHhcCeEEEEEecCC
Confidence 67899999999999985
No 200
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=98.27 E-value=2.5e-07 Score=74.92 Aligned_cols=62 Identities=19% Similarity=0.165 Sum_probs=43.0
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
++.++||||||... .....+..+|++++|+|+..+...+... . ....+|.++|+||+|+...
T Consensus 171 ~~~~iiiDTpGi~~---~~~~~~~~aD~vl~V~d~~~~~~~~~l~--~--~~~~~p~ivVlNK~Dl~~~ 232 (355)
T 3p32_A 171 GFDVILIETVGVGQ---SEVAVANMVDTFVLLTLARTGDQLQGIK--K--GVLELADIVVVNKADGEHH 232 (355)
T ss_dssp TCCEEEEEECSCSS---HHHHHHTTCSEEEEEEESSTTCTTTTCC--T--TSGGGCSEEEEECCCGGGH
T ss_pred CCCEEEEeCCCCCc---HHHHHHHhCCEEEEEECCCCCccHHHHH--H--hHhhcCCEEEEECCCCcCh
Confidence 57899999999654 2334458899999999987543221111 1 1124699999999999754
No 201
>1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1
Probab=98.17 E-value=1e-06 Score=73.07 Aligned_cols=101 Identities=19% Similarity=0.135 Sum_probs=57.0
Q ss_pred ccccccccCCchhHH-----HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh-------hHHHHHHHHHhcCEEE
Q psy2609 2 LCMVSSYMDSRKDEQ-----ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD-------FSSEVSTAVRLCDGTI 69 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~-------~~~~~~~~l~~~d~~i 69 (161)
+||||+++..+.... .+..|.......+.+. ....+.++||||+.+ +.......+..++.++
T Consensus 167 gAGKSTLL~~Lsg~~~~i~~~~ftTl~p~~G~V~~~------~~~~~~l~DtpGli~~a~~~~~L~~~fl~~~era~~lL 240 (416)
T 1udx_A 167 NAGKSSLLAAMTRAHPKIAPYPFTTLSPNLGVVEVS------EEERFTLADIPGIIEGASEGKGLGLEFLRHIARTRVLL 240 (416)
T ss_dssp GGCHHHHHHHHCSSCCEECCCTTCSSCCEEEEEECS------SSCEEEEEECCCCCCCGGGSCCSCHHHHHHHTSSSEEE
T ss_pred CCcHHHHHHHHHcCCccccCcccceecceeeEEEec------CcceEEEEeccccccchhhhhhhhHHHHHHHHHHHhhh
Confidence 689999875543221 1222333333333333 136899999999732 2222233456699999
Q ss_pred EEEeCCCCCChhHHHHHHHHH-----HcCCCcEEEEECCcchhh
Q psy2609 70 IVVDCVEGICAQTQVALKQAW-----LEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 70 lVvd~~~~~~~~~~~~~~~~~-----~~~~p~ilv~NK~Dl~~~ 108 (161)
.|+|++...........+.+. ..+.|.++++||+|+...
T Consensus 241 ~vvDls~~~~~~ls~g~~el~~la~aL~~~P~ILVlNKlDl~~~ 284 (416)
T 1udx_A 241 YVLDAADEPLKTLETLRKEVGAYDPALLRRPSLVALNKVDLLEE 284 (416)
T ss_dssp EEEETTSCHHHHHHHHHHHHHHHCHHHHHSCEEEEEECCTTSCH
T ss_pred EEeCCccCCHHHHHHHHHHHHHHhHHhhcCCEEEEEECCChhhH
Confidence 999997111111111111111 136899999999998643
No 202
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=98.15 E-value=2.4e-06 Score=67.66 Aligned_cols=70 Identities=20% Similarity=0.282 Sum_probs=42.3
Q ss_pred CCceeEEEEeCCCc-------hhhHHHHH-------HHHHhcCE-------------EEEEEeCCC-CCChhHHHHHHHH
Q psy2609 38 PEEYLINLIDSPGH-------VDFSSEVS-------TAVRLCDG-------------TIIVVDCVE-GICAQTQVALKQA 89 (161)
Q Consensus 38 ~~~~~i~iiDTpG~-------~~~~~~~~-------~~l~~~d~-------------~ilVvd~~~-~~~~~~~~~~~~~ 89 (161)
+....+.+|||||+ +++...+. .+++..++ ++++.+.+. ++......+++.+
T Consensus 73 ~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~~~~sgg~rqrv~~ara~~ll~ldePt~~~Ld~~~~~~l~~l 152 (301)
T 2qnr_A 73 GVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYLHDESGLNRRHIIDNRVHCCFYFISPFGHGLKPLDVAFMKAI 152 (301)
T ss_dssp -CCEEEEEEEEC-----------CTTHHHHHHHHHHHHHHHHTSSCCTTCCCCCCCEEEEEECSSSSSCCHHHHHHHHHH
T ss_pred CcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHHHhCHHhhhhhhhhhhhheeeeecCcccCCCHHHHHHHHHH
Confidence 33568999999998 55444443 56665543 555555543 4666655444444
Q ss_pred HHcCCCcEEEEECCcchhh
Q psy2609 90 WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 90 ~~~~~p~ilv~NK~Dl~~~ 108 (161)
. .++|+++|+||+|+...
T Consensus 153 ~-~~~~iilV~~K~Dl~~~ 170 (301)
T 2qnr_A 153 H-NKVNIVPVIAKADTLTL 170 (301)
T ss_dssp T-TTSCEEEEECCGGGSCH
T ss_pred H-hcCCEEEEEEeCCCCCH
Confidence 2 46799999999999753
No 203
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=98.07 E-value=3e-06 Score=70.31 Aligned_cols=68 Identities=19% Similarity=0.253 Sum_probs=39.1
Q ss_pred ceeEEEEeCCCchhhHH-------H-------HHHH-----------HHhc--CEEEEEEeCC-CCCChhHHHHHHHHHH
Q psy2609 40 EYLINLIDSPGHVDFSS-------E-------VSTA-----------VRLC--DGTIIVVDCV-EGICAQTQVALKQAWL 91 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~-------~-------~~~~-----------l~~~--d~~ilVvd~~-~~~~~~~~~~~~~~~~ 91 (161)
...+.+|||||+.++.. . ...+ ++.+ ++++++++.+ .++...+..++..+.
T Consensus 87 ~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~~~~~~l~qr~~IaRal~~d~~~~vlL~ldePt~~~L~~~d~~~lk~L~- 165 (418)
T 2qag_C 87 QLLLTIVDTPGFGDAVDNSNCWQPVIDYIDSKFEDYLNAESRVNRRQMPDNRVQCCLYFIAPSGHGLKPLDIEFMKRLH- 165 (418)
T ss_dssp CEEEEEEECC-----------CHHHHHHHHHHHHHHTTTSCC-CCCCCCCC-CCEEEEECCC-CCSCCHHHHHHHHHHT-
T ss_pred ccceeeeechhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCeeEEEEEecCcccCCCHHHHHHHHHHh-
Confidence 34799999999876421 1 1111 1223 3455555555 567776665666554
Q ss_pred cCCCcEEEEECCcchhh
Q psy2609 92 EKIQPILVLNKIDRLIL 108 (161)
Q Consensus 92 ~~~p~ilv~NK~Dl~~~ 108 (161)
.++|+|+|+||+|+...
T Consensus 166 ~~v~iIlVinK~Dll~~ 182 (418)
T 2qag_C 166 EKVNIIPLIAKADTLTP 182 (418)
T ss_dssp TTSEEEEEEESTTSSCH
T ss_pred ccCcEEEEEEcccCccH
Confidence 48999999999998754
No 204
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=98.02 E-value=1.2e-05 Score=63.22 Aligned_cols=61 Identities=23% Similarity=0.251 Sum_probs=44.1
Q ss_pred EeCCCch-hhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 46 IDSPGHV-DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 46 iDTpG~~-~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
-.-|||. +..+++...+..+|+++.|+|+..+.......+.+++ .++|+++|+||+|+...
T Consensus 4 ~w~PGhm~ka~~~~~~~l~~aDvVl~VvDAr~p~~~~~~~l~~~l--~~kp~ilVlNK~DL~~~ 65 (282)
T 1puj_A 4 QWFPGHMAKARREVTEKLKLIDIVYELVDARIPMSSRNPMIEDIL--KNKPRIMLLNKADKADA 65 (282)
T ss_dssp -----CTTHHHHHHHHHGGGCSEEEEEEETTSTTTTSCHHHHHHC--SSSCEEEEEECGGGSCH
T ss_pred cCCchHHHHHHHHHHHHHhhCCEEEEEEeCCCCCccCCHHHHHHH--CCCCEEEEEECcccCCH
Confidence 3569986 6778899999999999999999977655433333333 57999999999999753
No 205
>2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens}
Probab=97.99 E-value=2.6e-06 Score=70.18 Aligned_cols=75 Identities=15% Similarity=0.208 Sum_probs=42.0
Q ss_pred ccccccccCCchhH-----HHcCCccccceEEEEeecCC---------C-CCCceeEEEEeCCCchhhHH-------HHH
Q psy2609 2 LCMVSSYMDSRKDE-----QERGITMKSSSISLYYKDNK---------D-TPEEYLINLIDSPGHVDFSS-------EVS 59 (161)
Q Consensus 2 ~~g~~~~~D~~~~E-----~~~giti~~~~~~~~~~~~~---------~-~~~~~~i~iiDTpG~~~~~~-------~~~ 59 (161)
|+|||++++.+... ..++.|++.....+.+.... + ..-..++.||||||+.++.. ...
T Consensus 32 nvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~r~~~l~~~~~p~~~~~~~i~lvDtpGl~~~as~~~glg~~~l 111 (396)
T 2ohf_A 32 NVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDERFDFLCQYHKPASKIPAFLNVVDIAGLVKGAHNGQGLGNAFL 111 (396)
T ss_dssp SSSHHHHHHHHHC-------------CCSEEEEECCCHHHHHHHHHHCCSEEECCEEEEEECCC-----------CCHHH
T ss_pred CCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCccceeeccccCcccccccccEEEECCCcccccchhhHHHHHHH
Confidence 79999998777554 34566776665555543100 0 00023699999999987544 567
Q ss_pred HHHHhcCEEEEEEeCCC
Q psy2609 60 TAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 60 ~~l~~~d~~ilVvd~~~ 76 (161)
.+++.+|++++|+|+.+
T Consensus 112 ~~ir~aD~Il~VvD~~~ 128 (396)
T 2ohf_A 112 SHISACDGIFHLTRAFE 128 (396)
T ss_dssp HHHHTSSSEEEEEEC--
T ss_pred HHHHhcCeEEEEEecCC
Confidence 88999999999999873
No 206
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=97.98 E-value=1.1e-06 Score=69.73 Aligned_cols=71 Identities=21% Similarity=0.084 Sum_probs=50.6
Q ss_pred CCceeEEEEe-CCC-----chhhHHHHHHHHHhcCEEEEEEeCCCCC-ChhH-HHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 38 PEEYLINLID-SPG-----HVDFSSEVSTAVRLCDGTIIVVDCVEGI-CAQT-QVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 38 ~~~~~i~iiD-TpG-----~~~~~~~~~~~l~~~d~~ilVvd~~~~~-~~~~-~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
|+.+.+..+| +-| ++++....+.+++++|++++|+|++++. +... ..++..+...++|+++|+||+|+...
T Consensus 47 GD~V~~~~~~~~~g~I~~i~er~~~l~r~~~~naD~vliV~d~~~p~~s~~~l~~~l~~~~~~~~~~ilV~NK~DL~~~ 125 (302)
T 2yv5_A 47 GDYVWGEVVDPNTFAIEEVEERKNLLIRPKVANVDRVIIVETLKMPEFNNYLLDNMLVVYEYFKVEPVIVFNKIDLLNE 125 (302)
T ss_dssp TCEEEEEEEETTEEEEEEECCCSCEEETTEEESCCEEEEEECSTTTTCCHHHHHHHHHHHHHTTCEEEEEECCGGGCCH
T ss_pred ceEEEEEEccCCeEEEEeeCChHHHHhHHHHHhcCEEEEEEECCCCCCCHHHHHHHHHHHHhCCCCEEEEEEcccCCCc
Confidence 3455666666 444 5667666777899999999999998653 4332 23344455678999999999999753
No 207
>2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A
Probab=97.89 E-value=1.6e-05 Score=64.80 Aligned_cols=75 Identities=12% Similarity=0.102 Sum_probs=48.9
Q ss_pred ccccccccCCchhHHH-----cCCccccceEEEEeecC---------CCC-----CCceeEEEEeCCCchhh-------H
Q psy2609 2 LCMVSSYMDSRKDEQE-----RGITMKSSSISLYYKDN---------KDT-----PEEYLINLIDSPGHVDF-------S 55 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~-----~giti~~~~~~~~~~~~---------~~~-----~~~~~i~iiDTpG~~~~-------~ 55 (161)
|+|||++++.+..... ++.|+........+... .+. ....++.+|||||+.++ .
T Consensus 11 nvGKSTL~n~L~~~~~~v~~~p~~Ti~pn~g~~~v~~~~l~~~~~~~~~~~~~~~~~~~~i~lvDtpGl~~~a~~~~~lg 90 (368)
T 2dby_A 11 NVGKSTLFNALTRANALAANYPFATIDKNVGVVPLEDERLYALQRTFAKGERVPPVVPTHVEFVDIAGLVKGAHKGEGLG 90 (368)
T ss_dssp SSSHHHHHHHHHHHHTTCSSCCGGGGSTTEEEEECCCHHHHHHHHHHCBTTBCCCEECCEEEEEECCSCCCCCCSSSCTT
T ss_pred CCCHHHHHHHHhCCCCcccCCCCceeccceeeEecChHHHHHHHHHhcccccccccCCceEEEEECCCccccccccchHH
Confidence 7899999988765541 23355544433322100 000 01457999999998653 3
Q ss_pred HHHHHHHHhcCEEEEEEeCCC
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~ 76 (161)
.....+++.+|++++|+|+..
T Consensus 91 ~~fl~~ir~ad~ii~VvD~~~ 111 (368)
T 2dby_A 91 NQFLAHIREVAAIAHVLRCFP 111 (368)
T ss_dssp HHHHHHHHTCSEEEEEEECCC
T ss_pred HHHHHHHHhCCEEEEEEECCC
Confidence 456678999999999999985
No 208
>3l82_B F-box only protein 4; TRFH domain, helix, GTPase domain, acetylation, ADP- ribosylation, alternative splicing, cell cycle, cell division; 2.40A {Homo sapiens}
Probab=97.74 E-value=5e-05 Score=57.74 Aligned_cols=58 Identities=9% Similarity=-0.002 Sum_probs=36.3
Q ss_pred CchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH-H---HHHHHH----cCCCcEEEEECC-cchh
Q psy2609 50 GHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV-A---LKQAWL----EKIQPILVLNKI-DRLI 107 (161)
Q Consensus 50 G~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~-~---~~~~~~----~~~p~ilv~NK~-Dl~~ 107 (161)
|+.+++..+..|+.++|++|+|||+++.-...... + ...+.. .++|+++++||. |++.
T Consensus 111 GQ~klRplWr~Yy~~TdglIfVVDSsD~~R~eak~EL~eL~~mL~ee~~L~gapLLVlANKqqDlp~ 177 (227)
T 3l82_B 111 SRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 177 (227)
T ss_dssp ------CCHHHHHHHCSEEEEEEECBTTCCCCHHHHHHHHHHHSCTTSSCSCSCEEEEEEESSTTSC
T ss_pred cHHHHHHHHHHHhcCCCEEEEEeccccHhHHHHHHHHHHHHHHhcchhhhCCCeEEEEeCCCcCccC
Confidence 78889999999999999999999998643222222 1 222211 478999999995 6754
No 209
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.68 E-value=3.7e-07 Score=74.42 Aligned_cols=98 Identities=11% Similarity=0.043 Sum_probs=57.8
Q ss_pred ccccccccCCchhHH-----------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh-------HHHHHHHH-
Q psy2609 2 LCMVSSYMDSRKDEQ-----------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF-------SSEVSTAV- 62 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~-----------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~-------~~~~~~~l- 62 (161)
|+||+++++.+.... .+|.|.+... +.+ ...+.++||||.... .......+
T Consensus 172 nvGKStliN~L~~~~~~~~~~~~~~~~~gtT~~~~~--~~~--------~~~~~liDtPG~~~~~~~~~~l~~~~l~~~~ 241 (369)
T 3ec1_A 172 NVGKSTFINRIIEEATGKGNVITTSYFPGTTLDMIE--IPL--------ESGATLYDTPGIINHHQMAHFVDARDLKIIT 241 (369)
T ss_dssp TSSHHHHHHHHHHHHHHTTCCCEEEECTTSSCEEEE--EEC--------STTCEEEECCSCCCCSSGGGGSCTTTHHHHS
T ss_pred CCchHHHHHHHHhhccCCccceeecCCCCeEEeeEE--EEe--------CCCeEEEeCCCcCcHHHHHHHHhHHHHHHHh
Confidence 789999998886651 2344443221 111 124899999997432 11223333
Q ss_pred --HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 63 --RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 63 --~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+..+.+++++++...........+.++...+.|+++++||+|.....
T Consensus 242 ~~~~i~~~~~~l~~~~~~~~g~l~~l~~l~~~~~~~~~v~~k~d~~~~~ 290 (369)
T 3ec1_A 242 PKREIHPRVYQLNEGQTLFFGGLARLDYIKGGRRSFVCYMANELTVHRT 290 (369)
T ss_dssp CSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred cccccCceEEEEcCCceEEECCEEEEEEccCCCceEEEEecCCcccccc
Confidence 66799999999842211111111223334578999999999987544
No 210
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=97.63 E-value=4.4e-06 Score=62.17 Aligned_cols=62 Identities=16% Similarity=0.143 Sum_probs=39.9
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.+.+|||||+..... .+....+.+++|+|++.+... .+......++|.++|+||+|+...
T Consensus 108 ~~d~iiidt~G~~~~~~---~~~~~~~~~i~vvd~~~~~~~----~~~~~~~~~~~~iiv~NK~Dl~~~ 169 (221)
T 2wsm_A 108 DCDLLLIENVGNLICPV---DFDLGENYRVVMVSVTEGDDV----VEKHPEIFRVADLIVINKVALAEA 169 (221)
T ss_dssp TCSEEEEEEEEBSSGGG---GCCCSCSEEEEEEEGGGCTTH----HHHCHHHHHTCSEEEEECGGGHHH
T ss_pred CCCEEEEeCCCCCCCCc---hhccccCcEEEEEeCCCcchh----hhhhhhhhhcCCEEEEecccCCcc
Confidence 56799999999511000 001246889999999866432 222223346899999999999753
No 211
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.61 E-value=0.00013 Score=61.82 Aligned_cols=66 Identities=20% Similarity=0.261 Sum_probs=43.6
Q ss_pred CceeEEEEeCCCchh----hHHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcchh
Q psy2609 39 EEYLINLIDSPGHVD----FSSEVSTAV--RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRLI 107 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~----~~~~~~~~l--~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~~ 107 (161)
..+.++||||||... +........ ..+|.+++|+|+..+.. ....+..... .+|+ ++|+||+|...
T Consensus 182 ~~~DvvIIDTpG~~~~~~~l~~el~~~~~~i~pd~vllVvDa~~g~~--~~~~a~~~~~-~~~i~gvVlNK~D~~~ 254 (504)
T 2j37_W 182 ENFEIIIVDTSGRHKQEDSLFEEMLQVANAIQPDNIVYVMDASIGQA--CEAQAKAFKD-KVDVASVIVTKLDGHA 254 (504)
T ss_dssp TTCCEEEEEECCCCTTCHHHHHHHHHHHHHHCCSEEEEEEETTCCTT--HHHHHHHHHH-HHCCCCEEEECTTSCC
T ss_pred CCCcEEEEeCCCCcccchhHHHHHHHHHhhhcCceEEEEEecccccc--HHHHHHHHHh-hcCceEEEEeCCcccc
Confidence 367899999999753 332322222 26899999999987653 2233333322 2785 89999999863
No 212
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=97.57 E-value=1.5e-05 Score=62.02 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=39.0
Q ss_pred CCch-hhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 49 PGHV-DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 49 pG~~-~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
|||. +..+++...+..+|+++.|+|+..+.......+ .++ ++|.++|+||+|+...
T Consensus 5 PGhm~ka~~~~~~~l~~~D~vl~VvDar~P~~~~~~~l-~ll---~k~~iivlNK~DL~~~ 61 (262)
T 3cnl_A 5 PGHIEKAKRQIKDLLRLVNTVVEVRDARAPFATSAYGV-DFS---RKETIILLNKVDIADE 61 (262)
T ss_dssp ----CCTTHHHHHHHTTCSEEEEEEETTSTTTTSCTTS-CCT---TSEEEEEEECGGGSCH
T ss_pred chHHHHHHHHHHHHHhhCCEEEEEeeCCCCCcCcChHH-Hhc---CCCcEEEEECccCCCH
Confidence 7875 345688999999999999999987654332111 112 8999999999999754
No 213
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus}
Probab=97.56 E-value=5.3e-05 Score=61.63 Aligned_cols=63 Identities=19% Similarity=0.003 Sum_probs=42.2
Q ss_pred EEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 43 INLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 43 i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
+.-+++| +++|.+....+++.++++++|+|+.+....+...+.+.+ .++|+++|+||+|+...
T Consensus 51 ~~~v~~~-~e~f~~~L~~~~~~~~lil~VvD~~d~~~s~~~~l~~~l--~~~piilV~NK~DLl~~ 113 (369)
T 3ec1_A 51 VQDVPLD-DDDFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPRFA--ADNPILLVGNKADLLPR 113 (369)
T ss_dssp ---------CHHHHHHHHHHHHCCEEEEEEETTCSGGGCCSSHHHHC--TTSCEEEEEECGGGSCT
T ss_pred ccCCcCC-HHHHHHHHHHhhccCcEEEEEEECCCCCCchhhHHHHHh--CCCCEEEEEEChhcCCC
Confidence 3344544 789999999999999999999999875533322222222 37899999999999754
No 214
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=97.52 E-value=0.00011 Score=61.10 Aligned_cols=42 Identities=14% Similarity=0.137 Sum_probs=31.7
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
++++++|+..++...+..+++.+. .++|+|+|+||+|.....
T Consensus 151 ~v~fI~d~~~~l~~~Dieilk~L~-~~~~vI~Vi~KtD~Lt~~ 192 (427)
T 2qag_B 151 CLYFIAPTGHSLKSLDLVTMKKLD-SKVNIIPIIAKADAISKS 192 (427)
T ss_dssp EEEEECCCC---CHHHHHHHHHTC-SCSEEEEEESCGGGSCHH
T ss_pred EEEEEeCCCCCCCHHHHHHHHHHh-hCCCEEEEEcchhccchH
Confidence 466788888888888888877775 689999999999987644
No 215
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.50 E-value=9.7e-07 Score=71.96 Aligned_cols=98 Identities=8% Similarity=0.027 Sum_probs=54.3
Q ss_pred ccccccccCCchhHH------------HcCCccccceEEEEeecCCCCCCceeEEEEeCCCchhh-------HHH-HHHH
Q psy2609 2 LCMVSSYMDSRKDEQ------------ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF-------SSE-VSTA 61 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~------------~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~-------~~~-~~~~ 61 (161)
|+||+++++.+..+. .+|.|.... .+.+ ...+.++||||..+. ... ....
T Consensus 170 nvGKStliN~L~~~~~~~~~~~~~~~~~~gtT~~~~--~~~~--------~~~~~liDtPG~~~~~~~~~~l~~~~l~~~ 239 (368)
T 3h2y_A 170 NVGKSTFINRMIKEFSDETENVITTSHFPGTTLDLI--DIPL--------DEESSLYDTPGIINHHQMAHYVGKQSLKLI 239 (368)
T ss_dssp TSSHHHHHHHHHHHHTTSCSSCCEEECCC----CEE--EEES--------SSSCEEEECCCBCCTTSGGGGSCHHHHHHH
T ss_pred CCChhHHHHHHHhhhccccccceecCCCCCeecceE--EEEe--------cCCeEEEeCCCcCcHHHHHHHhhHHHHHHh
Confidence 789999998887653 123333221 1111 113889999997432 111 1221
Q ss_pred --HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 62 --VRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 62 --l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
.+..+.+++++++...........+.++...++|+++++||+|.....
T Consensus 240 ~~~~~i~~~~~~l~~~~~~~~g~l~~~d~l~~~~~~~~~v~nk~d~~~~~ 289 (368)
T 3h2y_A 240 TPTKEIKPMVFQLNEEQTLFFSGLARFDYVSGGRRAFTCHFSNRLTIHRT 289 (368)
T ss_dssp SCSSCCCCEEEEECTTEEEEETTTEEEEEEESSSEEEEEEECTTSCEEEE
T ss_pred ccccccCceEEEEcCCCEEEEcceEEEEEecCCCceEEEEecCccccccc
Confidence 245678899998742211111111223334578999999999987544
No 216
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=97.39 E-value=0.00023 Score=56.52 Aligned_cols=60 Identities=8% Similarity=0.048 Sum_probs=41.2
Q ss_pred CCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHH----HHHHH---H-HcCCCcEEEEEC-Ccchh
Q psy2609 48 SPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQV----ALKQA---W-LEKIQPILVLNK-IDRLI 107 (161)
Q Consensus 48 TpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~----~~~~~---~-~~~~p~ilv~NK-~Dl~~ 107 (161)
-.|+..++..+..|+.++|++|+|||+++.-...... +...+ . ..++|+++++|| .|++.
T Consensus 194 ~GGQ~~lRplWr~Yy~~tdglIfVVDSsDreRleak~EL~eL~~mL~e~~~l~~apLLVfANKkQDlp~ 262 (312)
T 3l2o_B 194 QGSRYSVIPQIQKVCEVVDGFIYVANAEAHKRHEWQDEFSHIMAMTDPAFGSSGRPLLVLSCISQGDVK 262 (312)
T ss_dssp ---CCCCCHHHHHHHHHCSEEEECCBCBTTCCCCHHHHHHHHHHHHCHHHHCTTCCEEEEEEESSTTSC
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEecCCcHhHHHHHHHHHHHHHHhcchhhcCCCeEEEEeCCcccccC
Confidence 3578889999999999999999999998653322211 11222 1 158999999997 58754
No 217
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved in replication initiation, csgid, IDP90222; HET: DGI; 1.80A {Bacillus anthracis str}
Probab=97.37 E-value=7.6e-05 Score=60.69 Aligned_cols=57 Identities=16% Similarity=-0.013 Sum_probs=40.3
Q ss_pred CchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 50 GHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 50 G~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
..++|.+....+++.++++++|+|+++....+...+.+.. .++|+++|+||+|+...
T Consensus 55 ~~e~f~~~l~~i~~~~~~il~VvD~~d~~~~~~~~l~~~~--~~~p~ilV~NK~DL~~~ 111 (368)
T 3h2y_A 55 TDDDFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHRFV--GNNKVLLVGNKADLIPK 111 (368)
T ss_dssp -CHHHHHHHHHHHHSCCEEEEEEETTSHHHHCCTTHHHHS--SSSCEEEEEECGGGSCT
T ss_pred CHHHHHHHHHHHhccCcEEEEEEECCCCcccHHHHHHHHh--CCCcEEEEEEChhcCCc
Confidence 4578999999999999999999999853211111111111 37899999999999643
No 218
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=97.06 E-value=0.0036 Score=48.59 Aligned_cols=44 Identities=16% Similarity=0.147 Sum_probs=35.6
Q ss_pred cCEEEEEEeCC-CCCChhHHHHHHHHHHcCCCcEEEEECCcchhhh
Q psy2609 65 CDGTIIVVDCV-EGICAQTQVALKQAWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 65 ~d~~ilVvd~~-~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
+.++++++|.. .++.+.+..+++.+... +++|+|+||+|....+
T Consensus 112 al~~lllldep~~gL~~lD~~~l~~L~~~-~~vI~Vi~K~D~lt~~ 156 (270)
T 3sop_A 112 VHCCLYFISPTGHSLRPLDLEFMKHLSKV-VNIIPVIAKADTMTLE 156 (270)
T ss_dssp CCEEEEEECCCSSSCCHHHHHHHHHHHTT-SEEEEEETTGGGSCHH
T ss_pred eeeeeEEEecCCCcCCHHHHHHHHHHHhc-CcEEEEEeccccCCHH
Confidence 47888899854 78888888887777665 8999999999987654
No 219
>1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2
Probab=96.86 E-value=0.00053 Score=56.33 Aligned_cols=75 Identities=15% Similarity=0.207 Sum_probs=50.8
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCC-------CCCC---ceeEEEEeCCCchh-------hHHHH
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNK-------DTPE---EYLINLIDSPGHVD-------FSSEV 58 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~-------~~~~---~~~i~iiDTpG~~~-------~~~~~ 58 (161)
|||||++++.+... ..++.|++.....+.+.... .... ..++.+|||||... +....
T Consensus 30 naGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl~~~~s~~e~L~~~f 109 (392)
T 1ni3_A 30 NVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGLTKGASTGVGLGNAF 109 (392)
T ss_dssp SSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGGCCCCCSSSSSCHHH
T ss_pred CCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEeccccccCCcHHHHHHHHH
Confidence 79999998777652 23456777666666554100 0000 14689999999643 45567
Q ss_pred HHHHHhcCEEEEEEeCCC
Q psy2609 59 STAVRLCDGTIIVVDCVE 76 (161)
Q Consensus 59 ~~~l~~~d~~ilVvd~~~ 76 (161)
...++.+|+++.|+|+..
T Consensus 110 l~~ir~~d~il~Vvd~~~ 127 (392)
T 1ni3_A 110 LSHVRAVDAIYQVVRAFD 127 (392)
T ss_dssp HHHHTTCSEEEEEEECCC
T ss_pred HHHHHHHHHHHHHHhccc
Confidence 788899999999999864
No 220
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=96.82 E-value=0.0039 Score=45.28 Aligned_cols=64 Identities=19% Similarity=0.194 Sum_probs=48.4
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc-----CCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLE-----KIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~-----~~p~ilv~NK~Dl~ 106 (161)
.+.++++|||+.. ...+...+..+|.+++++...... ......++.+... ++++.+|+|++|..
T Consensus 75 ~yD~viiD~~~~~--~~~~~~~l~~ad~viiv~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~vv~N~~~~~ 143 (206)
T 4dzz_A 75 DYDFAIVDGAGSL--SVITSAAVMVSDLVIIPVTPSPLD-FSAAGSVVTVLEAQAYSRKVEARFLITRKIEM 143 (206)
T ss_dssp TSSEEEEECCSSS--SHHHHHHHHHCSEEEEEECSCTTT-HHHHHHHHHHHTTSCGGGCCEEEEEECSBCTT
T ss_pred CCCEEEEECCCCC--CHHHHHHHHHCCEEEEEecCCHHH-HHHHHHHHHHHHHHHhCCCCcEEEEEeccCCC
Confidence 5789999999975 456678888999999999987655 5555556655432 45678999999853
No 221
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.81 E-value=0.0036 Score=49.34 Aligned_cols=65 Identities=15% Similarity=0.180 Sum_probs=42.0
Q ss_pred CceeEEEEeCCCchh--hHHHHH------HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 39 EEYLINLIDSPGHVD--FSSEVS------TAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~--~~~~~~------~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
..+.++|+||||... ...... .....+|.+++|+|+..+ .......+... ..+|+ .+++||+|..
T Consensus 179 ~~~D~ViIDTpg~~~~~~~~~l~~el~~i~~~~~~d~vllVvda~~g--~~~~~~~~~~~-~~~~i~gvVlnk~D~~ 252 (297)
T 1j8m_F 179 EKMEIIIVDTAGRHGYGEEAALLEEMKNIYEAIKPDEVTLVIDASIG--QKAYDLASKFN-QASKIGTIIITKMDGT 252 (297)
T ss_dssp TTCSEEEEECCCSCCTTCHHHHHHHHHHHHHHHCCSEEEEEEEGGGG--GGHHHHHHHHH-HTCTTEEEEEECGGGC
T ss_pred CCCCEEEEeCCCCcccccHHHHHHHHHHHHHHhcCCEEEEEeeCCch--HHHHHHHHHHH-hhCCCCEEEEeCCCCC
Confidence 367899999999766 322211 234568999999999753 22333333332 25774 5899999975
No 222
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=96.80 E-value=0.004 Score=47.60 Aligned_cols=67 Identities=19% Similarity=0.009 Sum_probs=46.4
Q ss_pred CceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
+.+-++|+|||+...........+..+|.+|+|+.............++.+...++|++ +|+|+.|.
T Consensus 127 ~~yD~ViID~pp~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~gvV~N~~~~ 194 (262)
T 2ph1_A 127 GELDHLLIDLPPGTGDAPLTVMQDAKPTGVVVVSTPQELTAVIVEKAINMAEETNTSVLGLVENMSYF 194 (262)
T ss_dssp CSCSEEEEECCSSSSSHHHHHHHHHCCSEEEEEECSSSCCHHHHHHHHHHHHTTTCCEEEEEETTCCE
T ss_pred cCCCEEEEECcCCCchHHHHHHhhccCCeEEEEecCccchHHHHHHHHHHHHhCCCCEEEEEECCCcc
Confidence 36789999999965432233334447899999998775444444555566666688887 89999884
No 223
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.65 E-value=0.0054 Score=50.86 Aligned_cols=64 Identities=20% Similarity=0.279 Sum_probs=40.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHH---HH---hcCEEEEEEeCCCCCChhHHHHHHHHHHcCC-C-cEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTA---VR---LCDGTIIVVDCVEGICAQTQVALKQAWLEKI-Q-PILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~---l~---~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~-p-~ilv~NK~Dl~ 106 (161)
.+.+.|+||||........... +. .+|.+++|+|+..+. ......... ...+ | ..+|+||+|..
T Consensus 180 ~~D~vIIDT~G~~~~~~~l~~~l~~i~~~~~~d~vllVvda~~g~--~~~~~~~~~-~~~~~~i~gvVlnK~D~~ 251 (432)
T 2v3c_C 180 KADVLIIDTAGRHKEEKGLLEEMKQIKEITNPDEIILVIDGTIGQ--QAGIQAKAF-KEAVGEIGSIIVTKLDGS 251 (432)
T ss_dssp SCSEEEEECCCSCSSHHHHHHHHHHTTSSSCCSEEEEEEEGGGGG--GHHHHHHHH-HTTSCSCEEEEEECSSSC
T ss_pred CCCEEEEcCCCCccccHHHHHHHHHHHHHhcCcceeEEeeccccH--HHHHHHHHH-hhcccCCeEEEEeCCCCc
Confidence 5789999999976532222221 11 478999999997653 222222222 2346 7 67899999975
No 224
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=96.54 E-value=0.0019 Score=51.27 Aligned_cols=50 Identities=18% Similarity=0.259 Sum_probs=36.5
Q ss_pred HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHH---HHcCCCcEEEEECCcchhh
Q psy2609 58 VSTAVRLCDGTIIVVDCVEGICAQTQVALKQA---WLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 58 ~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~---~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+..+.++|.+++|+|+..+..... .+-+++ ...++|.++|+||+||...
T Consensus 80 ~R~~~anvD~v~~V~~~~~p~~~~~-~i~r~L~~~~~~~~~~vivlnK~DL~~~ 132 (307)
T 1t9h_A 80 IRPPICNVDQAVLVFSAVQPSFSTA-LLDRFLVLVEANDIQPIICITKMDLIED 132 (307)
T ss_dssp TTTTEECCCEEEEEEESTTTTCCHH-HHHHHHHHHHTTTCEEEEEEECGGGCCC
T ss_pred hHHHHHhCCEEEEEEeCCCCCCCHH-HHHHHHHHHHHCCCCEEEEEECCccCch
Confidence 3346888999999999986554333 333333 4568999999999999754
No 225
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=96.54 E-value=0.0011 Score=53.11 Aligned_cols=60 Identities=17% Similarity=0.136 Sum_probs=37.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
++++.|+||||..+-.. .....+|.+++|+|+..+... ..+... ...+|.++++||+|+.
T Consensus 147 ~~~~iliDT~Gi~~~~~---~v~~~~d~vl~v~d~~~~~~~--~~i~~~--i~~~~~ivvlNK~Dl~ 206 (337)
T 2qm8_A 147 GFDVILVETVGVGQSET---AVADLTDFFLVLMLPGAGDEL--QGIKKG--IFELADMIAVNKADDG 206 (337)
T ss_dssp TCCEEEEEECSSSSCHH---HHHTTSSEEEEEECSCC--------CCTT--HHHHCSEEEEECCSTT
T ss_pred CCCEEEEECCCCCcchh---hHHhhCCEEEEEEcCCCcccH--HHHHHH--HhccccEEEEEchhcc
Confidence 67899999999864321 234689999999998643211 001000 0135778899999964
No 226
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.41 E-value=0.0081 Score=50.06 Aligned_cols=64 Identities=20% Similarity=0.198 Sum_probs=39.2
Q ss_pred ceeEEEEeCCCchh----hHHHHH--HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVD----FSSEVS--TAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~~~--~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.+.+.|+||||... ...... .....+|.+++|+|+..+. .......... ..+++ .+++||+|..
T Consensus 182 ~~DvVIIDTaGrl~~d~~lm~el~~i~~~~~pd~vlLVvDA~~gq--~a~~~a~~f~-~~~~i~gVIlTKlD~~ 252 (443)
T 3dm5_A 182 GVDIIIVDTAGRHKEDKALIEEMKQISNVIHPHEVILVIDGTIGQ--QAYNQALAFK-EATPIGSIIVTKLDGS 252 (443)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GHHHHHHHHH-HSCTTEEEEEECCSSC
T ss_pred CCCEEEEECCCcccchHHHHHHHHHHHHhhcCceEEEEEeCCCch--hHHHHHHHHH-hhCCCeEEEEECCCCc
Confidence 47899999999532 222221 2233478999999998642 2233333222 24455 5899999975
No 227
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.20 E-value=0.011 Score=49.22 Aligned_cols=65 Identities=17% Similarity=0.200 Sum_probs=40.4
Q ss_pred ceeEEEEeCCCchh------hHHHHHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVD------FSSEVSTAVR--LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~------~~~~~~~~l~--~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.+.+.|+||||... +........+ ..+.+++|+|+..+. ............-.+..+++||+|..
T Consensus 179 ~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq--~a~~~a~~f~~~~~~~gVIlTKlD~~ 251 (433)
T 3kl4_A 179 KMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQ--KAYDLASRFHQASPIGSVIITKMDGT 251 (433)
T ss_dssp TCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGG--GGHHHHHHHHHHCSSEEEEEECGGGC
T ss_pred CCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccch--HHHHHHHHHhcccCCcEEEEeccccc
Confidence 57899999999633 3333333222 358999999998542 22233333332334557899999974
No 228
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=95.95 E-value=0.016 Score=44.81 Aligned_cols=66 Identities=14% Similarity=0.196 Sum_probs=47.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-++|+|||+.-... .+......+|.+|+|+..............+.+...+.+++ +|+|++|..
T Consensus 191 ~yD~VIIDtpp~~~~~-d~~~l~~~aD~vilVv~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 257 (271)
T 3bfv_A 191 NYNFVIIDTPPVNTVT-DAQLFSKFTGNVVYVVNSENNNKDEVKKGKELIEATGAKLLGVVLNRMPKD 257 (271)
T ss_dssp HCSEEEEECCCTTTCS-HHHHHHHHHCEEEEEEETTSCCHHHHHHHHHHHHTTTCEEEEEEEEEECC-
T ss_pred CCCEEEEeCCCCchHH-HHHHHHHHCCEEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEeCCcCC
Confidence 4679999999964321 23344567899999999876555555666666666778877 889999864
No 229
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.89 E-value=0.026 Score=46.74 Aligned_cols=64 Identities=25% Similarity=0.255 Sum_probs=39.2
Q ss_pred ceeEEEEeCCCchhhHHHHHH------HHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVST------AVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~------~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.+.++|+||||...+...... .+..++.+++|+|+..+. ......... ...+++ -+++||+|..
T Consensus 183 ~~D~VIIDTpG~l~~~~~l~~~L~~~~~~~~p~~vllVvda~~g~--~~~~~~~~f-~~~l~i~gvVlnK~D~~ 253 (433)
T 2xxa_A 183 FYDVLLVDTAGRLHVDEAMMDEIKQVHASINPVETLFVVDAMTGQ--DAANTAKAF-NEALPLTGVVLTKVDGD 253 (433)
T ss_dssp TCSEEEEECCCCCTTCHHHHHHHHHHHHHSCCSEEEEEEETTBCT--THHHHHHHH-HHHSCCCCEEEECTTSS
T ss_pred CCCEEEEECCCcccccHHHHHHHHHHHHhhcCcceeEEeecchhH--HHHHHHHHH-hccCCCeEEEEecCCCC
Confidence 678999999997543222222 233578999999998652 222222222 224664 4799999964
No 230
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=95.84 E-value=0.0095 Score=44.08 Aligned_cols=65 Identities=14% Similarity=0.078 Sum_probs=45.2
Q ss_pred ceeEEEEeCCCc-hhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH-cCCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGH-VDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL-EKIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~-~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~-~~~p~ilv~NK~Dl~ 106 (161)
.+.++++|||+. ... .+...+..+|.+|+++......-......++.+.. .+.+..+++|+++..
T Consensus 67 ~yD~viiD~p~~~~~~--~~~~~l~~aD~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 133 (209)
T 3cwq_A 67 KYQNIVIDTQARPEDE--DLEALADGCDLLVIPSTPDALALDALMLTIETLQKLGNNRFRILLTIIPPY 133 (209)
T ss_dssp GCSEEEEEEECCCSSS--HHHHHHHTSSEEEEEECSSHHHHHHHHHHHHHHHHTCSSSEEEEECSBCCT
T ss_pred cCCEEEEeCCCCcCcH--HHHHHHHHCCEEEEEecCCchhHHHHHHHHHHHHhccCCCEEEEEEecCCc
Confidence 578999999997 432 45667889999999998763222233344455544 267778999999864
No 231
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=95.80 E-value=0.013 Score=44.37 Aligned_cols=65 Identities=18% Similarity=0.167 Sum_probs=44.5
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-++++|||+... ..+...+..+|.+|+|+.............++.+...+.+.+ +|+|+++..
T Consensus 110 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 175 (263)
T 1hyq_A 110 STDILLLDAPAGLE--RSAVIAIAAAQELLLVVNPEISSITDGLKTKIVAERLGTKVLGVVVNRITTL 175 (263)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHHSSEEEEEECSSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECTT
T ss_pred hCCEEEEeCCCCCC--hHHHHHHHHCCEEEEEeCCChhHHHHHHHHHHHHHhcCCCeeEEEEccCCcc
Confidence 46799999998644 556778889999999998753222233344455555565554 889999853
No 232
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=95.79 E-value=0.011 Score=44.01 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=44.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-++++|||+... ..+...+..+|.+++|+.............++.+...+.+.+ +|+||++..
T Consensus 111 ~yD~viiD~~~~~~--~~~~~~~~~ad~vi~v~~~~~~~~~~~~~~~~~l~~~~~~~~~vv~N~~~~~ 176 (237)
T 1g3q_A 111 KFDFILIDCPAGLQ--LDAMSAMLSGEEALLVTNPEISCLTDTMKVGIVLKKAGLAILGFVLNRYGRS 176 (237)
T ss_dssp GCSEEEEECCSSSS--HHHHHHHTTCSEEEEEECSCHHHHHHHHHHHHHHHHTTCEEEEEEEEEETSC
T ss_pred cCCEEEEECCCCcC--HHHHHHHHHCCeEEEEecCCcccHHHHHHHHHHHHhCCCceEEEEEecCCcc
Confidence 57799999998643 456678889999999998763222233344455555565554 789999853
No 233
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=95.72 E-value=0.02 Score=44.78 Aligned_cols=66 Identities=21% Similarity=0.261 Sum_probs=48.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-++|||||+..... .+......+|++|+|+.............++.+...+.+++ +|+||+|..
T Consensus 201 ~yD~VIIDtpp~~~~~-da~~l~~~aD~vllVv~~~~~~~~~~~~~~~~l~~~g~~~~GvVlN~v~~~ 267 (286)
T 3la6_A 201 NYDLVLIDTPPILAVT-DAAIVGRHVGTTLMVARYAVNTLKEVETSLSRFEQNGIPVKGVILNSIFRR 267 (286)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHTTTCSEEEEEEETTTSBHHHHHHHHHHHHHTTCCCCEEEEEEECCC
T ss_pred CCCEEEEcCCCCcchH-HHHHHHHHCCeEEEEEeCCCCcHHHHHHHHHHHHhCCCCEEEEEEcCcccc
Confidence 3569999999974332 23445567999999999876555555666777777788875 889999864
No 234
>1f5n_A Interferon-induced guanylate-binding protein 1; GBP, GTP hydrolysis, GDP, GMP, dynamin related, large GTPase family. GMPPNP, GPPNHP.; HET: GNP; 1.70A {Homo sapiens} SCOP: a.114.1.1 c.37.1.8 PDB: 1dg3_A* 2b8w_A* 2b92_A* 2bc9_A* 2d4h_A*
Probab=95.62 E-value=0.0024 Score=55.05 Aligned_cols=86 Identities=13% Similarity=0.053 Sum_probs=45.6
Q ss_pred ccccccccCCchhHHH----cCCccccceEEEEeecCCCCCCceeEEEEeCCCchhhHH------HHHHHHHhcCEEEEE
Q psy2609 2 LCMVSSYMDSRKDEQE----RGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSS------EVSTAVRLCDGTIIV 71 (161)
Q Consensus 2 ~~g~~~~~D~~~~E~~----~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~~~~------~~~~~l~~~d~~ilV 71 (161)
|+||+++++.+..... .+.|.......+.|...-+......+.++||||..+... ....++...-..++|
T Consensus 48 nvGKStLiN~L~g~~~~~~~~~tt~~~T~gi~~~~~~~~~~~~~~i~LiDTpGi~~~~~~~~~~~~~~fala~llss~lv 127 (592)
T 1f5n_A 48 RTGKSYLMNKLAGKKKGFSLGSTVQSHTKGIWMWCVPHPKKPGHILVLLDTEGLGDVEKGDNQNDSWIFALAVLLSSTFV 127 (592)
T ss_dssp TSSHHHHHHHHTTCSSCSCCCCSSSCCCCSEEEEEEECSSSTTCEEEEEEECCBCCGGGCCCTTHHHHHHHHHHHCSEEE
T ss_pred CCCHHHHHHhHcCCCCccccCCCCCCceeEEEEeecccccCCCceEEEecCCCcCcccccchhHHHHHHHHHHHhcCeEE
Confidence 7899999887765431 122222222223331100113356899999999754221 122222221122678
Q ss_pred EeCCCCCChhHHHHHH
Q psy2609 72 VDCVEGICAQTQVALK 87 (161)
Q Consensus 72 vd~~~~~~~~~~~~~~ 87 (161)
+|+..++..++..++.
T Consensus 128 ~n~~~~i~~~dl~~l~ 143 (592)
T 1f5n_A 128 YNSIGTINQQAMDQLY 143 (592)
T ss_dssp EEEESCSSHHHHHTTH
T ss_pred EECCCCccHHHHHHHH
Confidence 8887777776655443
No 235
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=95.55 E-value=0.0087 Score=44.57 Aligned_cols=64 Identities=16% Similarity=0.037 Sum_probs=43.9
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl 105 (161)
.+-++++|||+.... .+...+..+|.+++|+......-.....+.+.....+++. .+++||.+.
T Consensus 131 ~yD~viiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~~~~~~~~~~~~v~N~~~~ 195 (254)
T 3kjh_A 131 KKEAVVMDMGAGIEH--LTRGTAKAVDMMIAVIEPNLNSIKTGLNIEKLAGDLGIKKVRYVINKVRN 195 (254)
T ss_dssp CCSEEEEEECTTCTT--CCHHHHTTCSEEEEEECSSHHHHHHHHHHHHHHHHHTCSCEEEEEEEECC
T ss_pred CCCEEEEeCCCcccH--HHHHHHHHCCEEEEecCCCHHHHHHHHHHHHHHHHcCCccEEEEEeCCCC
Confidence 678999999985433 4567788999999999876322222334444555556664 589999983
No 236
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=95.54 E-value=0.04 Score=43.15 Aligned_cols=66 Identities=12% Similarity=0.208 Sum_probs=48.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-++|+|||+.-... ........+|.+|+|+.............++.+...+.+++ +|+|++|..
T Consensus 213 ~yD~VIIDtpp~~~~~-d~~~l~~~ad~vilV~~~~~~~~~~~~~~~~~l~~~~~~~~GvVlN~~~~~ 279 (299)
T 3cio_A 213 HYDLVIVDTPPMLAVS-DAAVVGRSVGTSLLVARFGLNTAKEVSLSMQRLEQAGVNIKGAILNGVIKR 279 (299)
T ss_dssp HCSEEEEECCCTTTCT-HHHHHGGGCSEEEEEEETTTSCTTHHHHHHHHHHHTTCCCCCEEEEECCCC
T ss_pred CCCEEEEcCCCCchhH-HHHHHHHHCCEEEEEEcCCCChHHHHHHHHHHHHhCCCCeEEEEEeCCccC
Confidence 3579999999965422 22334567999999999876655666666777777788876 889999864
No 237
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=95.28 E-value=0.049 Score=41.22 Aligned_cols=66 Identities=15% Similarity=0.177 Sum_probs=42.2
Q ss_pred CceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHH---H---cCCCcE-EEEECCcch
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAW---L---EKIQPI-LVLNKIDRL 106 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~---~---~~~p~i-lv~NK~Dl~ 106 (161)
..+-++++|||+.... .+...+..+|.+|+++.............++.+. . .+++++ +|+|+.+..
T Consensus 110 ~~yD~iiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~N~~~~~ 182 (257)
T 1wcv_1 110 EGYDLVLLDAPPSLSP--LTLNALAAAEGVVVPVQAEYYALEGVAGLLATLEEVRAGLNPRLRLLGILVTMYDGR 182 (257)
T ss_dssp TTCSEEEEECCSSCCH--HHHHHHHHCSEEEEEEESSTHHHHHHHHHHHHHHHHHHHTCTTCEEEEEEEESBCTT
T ss_pred cCCCEEEEeCCCCCCH--HHHHHHHHCCeEEEEecCchHHHHHHHHHHHHHHHHHHHhCCCceEEEEEEEeECCC
Confidence 3678999999996432 3456778899999999876322122222222222 1 256665 899999853
No 238
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=95.15 E-value=0.036 Score=42.07 Aligned_cols=63 Identities=13% Similarity=0.081 Sum_probs=43.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHc--CCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLE--KIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~--~~p~ilv~NK~D 104 (161)
.+-++++|||+.. ...+...+..+|.+|+++............+.+.+... +.++.+|+|++.
T Consensus 144 ~yD~viiD~pp~~--~~~~~~~l~~aD~vivv~~~~~~s~~~~~~~~~~l~~~~~~~~~~vv~N~~~ 208 (267)
T 3k9g_A 144 KYDYIVIDTNPSL--DVTLKNALLCSDYVIIPMTAEKWAVESLDLFNFFVRKLNLFLPIFLIITRFK 208 (267)
T ss_dssp TCSEEEEEECSSC--SHHHHHHHTTCSEEEEEEESCTTHHHHHHHHHHHHHTTTCCCCEEEEEEEEC
T ss_pred CCCEEEEECcCCc--cHHHHHHHHHCCeEEEEeCCChHHHHHHHHHHHHHHHHhccCCEEEEEeccc
Confidence 5779999999964 33566778889999999988643222233444444443 457789999994
No 239
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=95.12 E-value=0.018 Score=43.32 Aligned_cols=65 Identities=17% Similarity=0.207 Sum_probs=43.0
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcC---------CCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEK---------IQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~---------~p~ilv~NK~Dl~ 106 (161)
.+-++++|||+... ..+...+..+|.+|+|+.............++.+...+ .+.-+|+|+++..
T Consensus 113 ~yD~viiD~p~~~~--~~~~~~l~~ad~vi~v~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~~~~~v~N~~~~~ 186 (260)
T 3q9l_A 113 DFEFIVCDSPAGIE--TGALMALYFADEAIITTNPEVSSVRDSDRILGILASKSRRAENGEEPIKEHLLLTRYNPG 186 (260)
T ss_dssp TCSEEEEECCSSSS--HHHHHHHHTCSEEEEEECSSHHHHHHHHHHHHHHTTSSHHHHTTCSCCEEEEEEEEECHH
T ss_pred CCCEEEEcCCCCCC--HHHHHHHHhCCEEEEEecCChhHHHHHHHHHHHHHHhccccccccCCcceEEEEecCCcc
Confidence 57899999998543 46778888999999999875322222233333333222 3456899999854
No 240
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=94.88 E-value=0.044 Score=42.27 Aligned_cols=65 Identities=17% Similarity=0.115 Sum_probs=42.9
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH------cCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL------EKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~------~~~p~i-lv~NK~Dl~ 106 (161)
.+-++|+|||+.... ....++..+|.+|+++.+...........+..+.. .+++++ +|+|+.|..
T Consensus 154 ~yD~IiiD~pp~~~~--~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~~~gvv~n~~~~~ 225 (298)
T 2oze_A 154 DYDLIIIDTVPTPSV--YTNNAIVASDYVMIPLQAEEESTNNIQNYISYLIDLQEQFNPGLDMIGFVPYLVDTD 225 (298)
T ss_dssp GCSEEEEEECSSCSH--HHHHHHHHCSEEEEEECGGGCCHHHHHHHHHHHHHHHHHHCTTCEEEEEEEEESCTT
T ss_pred CCCEEEEECCCCccH--HHHHHHHHCCeEEEEecCcHHHHHHHHHHHHHHHHHHHHhCCCCeEEEEEEEEECCC
Confidence 577999999996443 34556778999999998764333333333333322 356755 889999864
No 241
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.76 E-value=0.045 Score=44.32 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=30.2
Q ss_pred HHhcCEEEEEEeCCCCCChhHHHHHHH---HHHcCCCcEEEEECCcchhhh
Q psy2609 62 VRLCDGTIIVVDCVEGICAQTQVALKQ---AWLEKIQPILVLNKIDRLILE 109 (161)
Q Consensus 62 l~~~d~~ilVvd~~~~~~~~~~~~~~~---~~~~~~p~ilv~NK~Dl~~~~ 109 (161)
..++|.+++|.+.. +......+-++ +...++|.+||+||+||...+
T Consensus 128 ~anvD~v~iv~a~~--P~~~~~~i~r~L~~a~~~~~~~iivlNK~DL~~~~ 176 (358)
T 2rcn_A 128 AANIDQIVIVSAIL--PELSLNIIDRYLVGCETLQVEPLIVLNKIDLLDDE 176 (358)
T ss_dssp EECCCEEEEEEEST--TTCCHHHHHHHHHHHHHHTCEEEEEEECGGGCCHH
T ss_pred HhcCCEEEEEEeCC--CCCCHHHHHHHHHHHHhcCCCEEEEEECccCCCch
Confidence 56789999876543 22222233333 345689999999999997543
No 242
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=94.33 E-value=0.17 Score=40.03 Aligned_cols=64 Identities=17% Similarity=0.343 Sum_probs=37.0
Q ss_pred ceeEEEEeCCCchhhHHHHHH-------HHH-----hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVST-------AVR-----LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~-------~l~-----~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+-++|+||||.......... .+. .+|.+++|+++..+ .......+.. ....++. +++||+|..
T Consensus 191 ~yD~VIIDTpg~l~~~~~l~~eL~~~~~vi~~~~p~~~d~vllVl~a~~~--~~~l~~~~~~-~~~~~i~GvVltk~d~~ 267 (320)
T 1zu4_A 191 NYDLLLIDTAGRLQNKTNLMAELEKMNKIIQQVEKSAPHEVLLVIDATTG--QNGVIQAEEF-SKVADVSGIILTKMDST 267 (320)
T ss_dssp TCSEEEEECCCCGGGHHHHHHHHHHHHHHHHTTCTTCCSEEEEEEEGGGT--HHHHHHHHHH-TTTSCCCEEEEECGGGC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCc--HHHHHHHHHH-hhcCCCcEEEEeCCCCC
Confidence 578999999997543221111 111 26899999998743 2222222211 1234443 789999964
No 243
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=94.13 E-value=0.047 Score=40.56 Aligned_cols=65 Identities=17% Similarity=0.020 Sum_probs=43.4
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCC---CcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKI---QPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~---p~ilv~NK~Dl~ 106 (161)
.+-++++|||+... ..+...+..+|.+++|+.............++.+...+. ++-+|+|+++..
T Consensus 118 ~yD~viiD~p~~~~--~~~~~~l~~ad~viiv~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~N~~~~~ 185 (245)
T 3ea0_A 118 FYDYIIVDFGASID--HVGVWVLEHLDELCIVTTPSLQSLRRAGQLLKLCKEFEKPISRIEIILNRADTN 185 (245)
T ss_dssp HCSEEEEEEESSCC--TTHHHHGGGCSEEEEEECSSHHHHHHHHHHHHHHHTCSSCCSCEEEEEESTTSC
T ss_pred hCCEEEEeCCCCCc--hHHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhCCCccceEEEEecCCCC
Confidence 46799999998643 245667889999999998763222333444455544442 245899999853
No 244
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=94.02 E-value=0.14 Score=42.28 Aligned_cols=64 Identities=25% Similarity=0.322 Sum_probs=37.4
Q ss_pred ceeEEEEeCCCchhh----HHHHH--HHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCC-cEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDF----SSEVS--TAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQ-PILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~----~~~~~--~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p-~ilv~NK~Dl~ 106 (161)
.+-++|+||||.... ..... ...-.+|.+++|+|+..+ ........... ..++ .-+++||+|..
T Consensus 180 ~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvDa~tg--q~av~~a~~f~-~~l~i~GVIlTKlD~~ 250 (425)
T 2ffh_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGD 250 (425)
T ss_dssp TCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHH-HHTCCCEEEEESGGGC
T ss_pred CCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEeccch--HHHHHHHHHHH-hcCCceEEEEeCcCCc
Confidence 567999999996432 22211 112247899999998754 22222222222 2355 45789999963
No 245
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=93.88 E-value=0.022 Score=44.00 Aligned_cols=34 Identities=26% Similarity=0.193 Sum_probs=28.4
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++|+|||+.. ...+...+..+|.+|+++...
T Consensus 103 ~yD~viiD~p~~~--~~~~~~~l~~aD~viiv~~~~ 136 (286)
T 2xj4_A 103 ECDFILIDTPGGD--SAITRMAHGRADLVVTPMNDS 136 (286)
T ss_dssp HCSEEEEECCSSC--CHHHHHHHHTCSEEEEEEESS
T ss_pred cCCEEEEcCCCCc--cHHHHHHHHHCCEEEEEEcCC
Confidence 4679999999974 456778899999999999875
No 246
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=93.13 E-value=0.046 Score=42.46 Aligned_cols=65 Identities=12% Similarity=0.080 Sum_probs=40.6
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH----cCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL----EKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~----~~~p~i-lv~NK~Dl 105 (161)
.+-++++|||+..... .+...+..+|.+|+|+......-......++.+.. .+++++ +|+|+++.
T Consensus 156 ~yD~ViiD~p~~~~~~-~~~~~l~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvV~N~~~~ 225 (307)
T 3end_A 156 DTDVVIFDVLGDVVCG-GFAAPLQHADQAVVVTANDFDSIYAMNRIIAAVQAKSKNYKVRLAGCVANRSRA 225 (307)
T ss_dssp SCSEEEEEECCSSCCG-GGGGGGGTCSEEEEEECSSHHHHHHHHHHHHHHHTTTTTCCCEEEEEEEESCSC
T ss_pred cCCEEEEeCCCccchH-HHHHHHHHCCEEEEEecCcHHHHHHHHHHHHHHHHhhhcCCCceEEEEEecCCc
Confidence 5789999999853311 22346788999999997752211222333444432 345555 89999984
No 247
>1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8
Probab=92.63 E-value=0.015 Score=45.33 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=21.8
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCch
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHV 52 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~ 52 (161)
|+||+++++.+..+ ..+|+|....... . ...+.+|||||..
T Consensus 130 nvGKSsliN~l~~~~~~~~~~~~g~T~~~~~~~---~-------~~~~~l~DtpG~~ 176 (282)
T 1puj_A 130 NVGKSTLINRLAKKNIAKTGDRPGITTSQQWVK---V-------GKELELLDTPGIL 176 (282)
T ss_dssp TSSHHHHHHHHHTSCCC------------CCEE---E-------TTTEEEEECCCCC
T ss_pred CCchHHHHHHHhcCceeecCCCCCeeeeeEEEE---e-------CCCEEEEECcCcC
Confidence 78999998766433 3456665543211 1 2378999999974
No 248
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=91.73 E-value=0.43 Score=34.80 Aligned_cols=66 Identities=15% Similarity=0.024 Sum_probs=37.7
Q ss_pred ceeEEEEeCCCchhh--H--HHHHHHHHhc-CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVDF--S--SEVSTAVRLC-DGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~--~--~~~~~~l~~~-d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
.+-+.++||||.-.. . .......... +.+++|+....+........++.+...+++++ +|+|++|.
T Consensus 108 ~yD~viID~p~~l~~p~~~~~~~~~l~~~~~~~vi~v~~~~~~~~~~~~~~i~~l~~~~~~i~gvvlN~~~~ 179 (224)
T 1byi_A 108 QADWVLVEGAGGWFTPLSDTFTFADWVTQEQLPVILVVGVKLGCINHAMLTAQVIQHAGLTLAGWVANDVTP 179 (224)
T ss_dssp TCSEEEEECSSSTTCEEETTEEHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEECCSS
T ss_pred hCCEEEEEcCCccccCCCcchhHHHHHHHhCCCEEEEecCCCCcHHHHHHHHHHHHHCCCcEEEEEEeCCCC
Confidence 578999999975321 0 0111222222 34777887753222333444455556678866 78999985
No 249
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=91.71 E-value=0.56 Score=36.88 Aligned_cols=64 Identities=20% Similarity=0.288 Sum_probs=35.2
Q ss_pred ceeEEEEeCCCchhhHHH----H---HHHHH-----hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSE----V---STAVR-----LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~----~---~~~l~-----~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.+.+.++||||....... . ...+. ..+.+++|+|+..+ .......+.... ..++ -+++||+|-.
T Consensus 186 ~~dvvIiDtpg~~~~~~~l~~eL~~l~~~i~~~i~~~p~~vllVlda~t~--~~~l~~a~~~~~-~~~i~gvVlTk~D~~ 262 (306)
T 1vma_A 186 NKDVVIIDTAGRLHTKKNLMEELRKVHRVVKKKIPDAPHETLLVIDATTG--QNGLVQAKIFKE-AVNVTGIILTKLDGT 262 (306)
T ss_dssp TCSEEEEEECCCCSCHHHHHHHHHHHHHHGGGTCTTCCSEEEEEEEGGGH--HHHHHHHHHHHH-HSCCCEEEEECGGGC
T ss_pred CCCEEEEECCCchhhHHHHHHHHHHHHHHHhhccCCCCcEEEEEEECCCC--HHHHHHHHHHHh-cCCCCEEEEeCCCCc
Confidence 457999999996332221 1 11221 26788999998732 112222222222 2443 4778999964
No 250
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=91.68 E-value=0.49 Score=36.82 Aligned_cols=64 Identities=23% Similarity=0.278 Sum_probs=36.6
Q ss_pred ceeEEEEeCCCchhh----HHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDF----SSEVSTAV--RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~----~~~~~~~l--~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~-ilv~NK~Dl~ 106 (161)
.+.+.++||||.... ........ -.++.+++|+|+..+ .......+... ..+++ -+++||+|..
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~~~~~--~~~~~~~~~~~-~~~~i~givlnk~d~~ 250 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLDAMTG--QEALSVARAFD-EKVGVTGLVLTKLDGD 250 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEEGGGT--HHHHHHHHHHH-HHTCCCEEEEECGGGC
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEeCCCc--HHHHHHHHHHh-hcCCCCEEEEECCCCC
Confidence 568999999985322 22221111 247888999998743 22222222222 23554 4789999964
No 251
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=91.45 E-value=0.28 Score=42.16 Aligned_cols=67 Identities=19% Similarity=0.165 Sum_probs=40.9
Q ss_pred eEEEEeCCCchh-------------hHHHHHHHHHhc-CEEEEEEeCCCCCCh-hHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 42 LINLIDSPGHVD-------------FSSEVSTAVRLC-DGTIIVVDCVEGICA-QTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 42 ~i~iiDTpG~~~-------------~~~~~~~~l~~~-d~~ilVvd~~~~~~~-~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.+.++|.||+.+ +...+..++... ..++++++++..... ....+++.+...+.+.|+|+||.|+.
T Consensus 148 ~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv 227 (608)
T 3szr_A 148 DLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLV 227 (608)
T ss_dssp CEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGS
T ss_pred ceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhc
Confidence 599999998532 233344444443 456666666544332 23445555555678999999999987
Q ss_pred hh
Q psy2609 107 IL 108 (161)
Q Consensus 107 ~~ 108 (161)
..
T Consensus 228 ~~ 229 (608)
T 3szr_A 228 DK 229 (608)
T ss_dssp SS
T ss_pred Cc
Confidence 43
No 252
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=90.65 E-value=0.1 Score=38.14 Aligned_cols=60 Identities=20% Similarity=0.174 Sum_probs=31.2
Q ss_pred eEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcchhh
Q psy2609 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~~~ 108 (161)
.+.++||+|.-.... +.-...+..+.|+|+..+...... . ....+.|.++|+||+|+...
T Consensus 120 d~~~id~~g~i~~~~---s~~~~~~~~~~v~~~~~~~~~~~~-~---~~~~~~~~iiv~NK~Dl~~~ 179 (226)
T 2hf9_A 120 DLLFIENVGNLICPA---DFDLGTHKRIVVISTTEGDDTIEK-H---PGIMKTADLIVINKIDLADA 179 (226)
T ss_dssp SEEEEECCSCSSGGG---GCCCSCSEEEEEEEGGGCTTTTTT-C---HHHHTTCSEEEEECGGGHHH
T ss_pred CEEEEeCCCCccCcc---hhhhccCcEEEEEecCcchhhHhh-h---hhHhhcCCEEEEeccccCch
Confidence 577777777311000 000123456677775432211110 0 11136899999999999753
No 253
>3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A*
Probab=89.94 E-value=0.023 Score=43.77 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=23.0
Q ss_pred ccccccccCCchhH------HHcCCccccceEEEEeecCCCCCCceeEEEEeCCCchh
Q psy2609 2 LCMVSSYMDSRKDE------QERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVD 53 (161)
Q Consensus 2 ~~g~~~~~D~~~~E------~~~giti~~~~~~~~~~~~~~~~~~~~i~iiDTpG~~~ 53 (161)
|+|||++++.+..+ ..+|+|...... .. ...+.+|||||...
T Consensus 109 ~vGKSslin~l~~~~~~~~~~~~g~T~~~~~~---~~-------~~~~~l~DtpG~~~ 156 (262)
T 3cnl_A 109 NTGKSTIINKLKGKRASSVGAQPGITKGIQWF---SL-------ENGVKILDTPGILY 156 (262)
T ss_dssp TSSHHHHHHHHHTTCC----------CCSCEE---EC-------TTSCEEESSCEECC
T ss_pred CCCHHHHHHHHhcccccccCCCCCCccceEEE---Ee-------CCCEEEEECCCccc
Confidence 68999998765432 234555443211 11 23789999999754
No 254
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=89.35 E-value=0.72 Score=36.70 Aligned_cols=42 Identities=17% Similarity=-0.025 Sum_probs=30.3
Q ss_pred cCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 65 CDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 65 ~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+++++|.-............+..+...++|+. +|+|++...
T Consensus 237 ~~~~vlV~~p~~~~~~e~~r~~~~l~~~~i~v~gvV~N~~~~~ 279 (349)
T 3ug7_A 237 RTAFRLVVIPEEMSILESERAMKALQKYGIPIDAVIVNQLIPE 279 (349)
T ss_dssp TEEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CceEEEEECCCccHHHHHHHHHHHHHHCCCCeeEEEEcCCccc
Confidence 367888886654334555667777888899996 889998754
No 255
>3q5d_A Atlastin-1; G protein, GTPase, GDP/GTP binding, hydrolase; HET: GDP; 2.70A {Homo sapiens} PDB: 3q5e_A* 3qnu_A* 3qof_A*
Probab=89.33 E-value=0.29 Score=40.70 Aligned_cols=48 Identities=15% Similarity=0.156 Sum_probs=27.0
Q ss_pred CCCceeEEEEeCCCchhhHH-----HHHHHHHh--cCEEEEEEeCCCCCChhHHHHH
Q psy2609 37 TPEEYLINLIDSPGHVDFSS-----EVSTAVRL--CDGTIIVVDCVEGICAQTQVAL 86 (161)
Q Consensus 37 ~~~~~~i~iiDTpG~~~~~~-----~~~~~l~~--~d~~ilVvd~~~~~~~~~~~~~ 86 (161)
++...++.|+||||..+-.. ....++.. ++..|+-. ...+.......+
T Consensus 136 ~~~~~~vvllDTeG~~~~~~~~~~d~~ifal~~lLSs~~IyN~--~~~i~~~~l~~L 190 (447)
T 3q5d_A 136 DGKKVAVLLMDTQGTFDSQSTLRDSATVFALSTMISSIQVYNL--SQNVQEDDLQHL 190 (447)
T ss_dssp SSCEEEEEEEEEECCCSSHHHHHHHHHHHHHHHHHCSEEEEEE--SSSCCHHHHHHH
T ss_pred CCCcceEEEEcCCcccccccchhhhHHHHHHHHHHhhHHHHhh--cccccHHHHHHH
Confidence 35568999999999754332 22233333 66555544 444555444443
No 256
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=87.24 E-value=0.37 Score=36.28 Aligned_cols=66 Identities=11% Similarity=-0.077 Sum_probs=37.1
Q ss_pred ceeEEEEeCCCchhhHHH-HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH----cCCCc-EEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSE-VSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL----EKIQP-ILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~-~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~----~~~p~-ilv~NK~Dl 105 (161)
.+-++++||||....... .......+|.+++++......-......++.+.. .++++ -+|+|+.+.
T Consensus 115 ~yD~iiiD~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 186 (269)
T 1cp2_A 115 DLDYVFYDVLGDVVCGGFAMPIREGKAQEIYIVASGEMMALYAANNISKGIQKYAKSGGVRLGGIICNSRKV 186 (269)
T ss_dssp TCSEEEEEEECSSCSTTTTHHHHTTSCCEEEEEECSSHHHHHHHHHHHHHHHHHBTTBBCEEEEEEEECCSS
T ss_pred CCCEEEEeCCchhhhhhhhhhhhHhhCCEEEEeecCchhhHHHHHHHHHHHHHHHhcCCCcEEEEEeecCCc
Confidence 578999999995322111 1122246999999998752111112222333332 24565 478999863
No 257
>3ez9_A Para; DNA binding, winged-HTH, partition, biosynthetic protein; 2.80A {Salmonella enterica subsp} PDB: 3ezf_A
Probab=87.07 E-value=0.69 Score=37.31 Aligned_cols=34 Identities=18% Similarity=0.190 Sum_probs=27.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++|+|||+.-. ..+..++..+|.+|+|+...
T Consensus 247 ~yD~VIID~pP~~~--~~~~~al~~aD~vliv~~p~ 280 (403)
T 3ez9_A 247 DYDFIFIDTGPHLD--PFLLNGLAASDLLLTPTPPA 280 (403)
T ss_dssp GCSEEEEEECSSCS--HHHHHHHHHCSEEEEEECSS
T ss_pred cCCEEEEECCCCcc--HHHHHHHHHCCEEEEEecCc
Confidence 57799999998654 45677888999999999764
No 258
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=86.92 E-value=0.32 Score=37.24 Aligned_cols=66 Identities=12% Similarity=-0.029 Sum_probs=36.8
Q ss_pred ceeEEEEeCCCchhhHHH-HHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHH----cCCCc-EEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSE-VSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWL----EKIQP-ILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~-~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~----~~~p~-ilv~NK~Dl 105 (161)
.+-++++||||....... .......+|.+++++......-......++.+.. .+.++ -+|+|+.+.
T Consensus 118 ~yD~ViID~~~~~~~~~~~~~~~~~~aD~viiv~~~~~~s~~~~~~~~~~l~~~~~~~~~~~~gvv~N~~~~ 189 (289)
T 2afh_E 118 DLDFVFYDVLGDVVCGGFAMPIRENKAQEIYIVCSGEMMAMYAANNISKGIVKYANSGSVRLGGLICNSRNT 189 (289)
T ss_dssp TCSEEEEEEECSSCCTTTTHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHHHHHHTTSCCEEEEEEEECCCC
T ss_pred CCCEEEEeCCCccccchhhhhhhhhhCCEEEEEecCCHHHHHHHHHHHHHHHHHHhcCCCceEEEEEecCCc
Confidence 678999999995321111 1222357999999997652111111222233322 25664 378999863
No 259
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=86.60 E-value=1 Score=35.90 Aligned_cols=41 Identities=7% Similarity=-0.085 Sum_probs=29.6
Q ss_pred hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCc
Q psy2609 64 LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKID 104 (161)
Q Consensus 64 ~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~D 104 (161)
.++.+++|.......-......+..+...++|+. +|+|++.
T Consensus 234 ~~~~~vlV~~pe~~si~ea~r~~~~L~~~g~~~~gvVvN~v~ 275 (354)
T 2woj_A 234 DLTTFVCVCISEFLSLYETERLIQELISYDMDVNSIIVNQLL 275 (354)
T ss_dssp TTEEEEEEEESSHHHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred CCcEEEEEeCCCcchHHHHHHHHHHHHHcCCCCCEEEEecCC
Confidence 4688899987653333445566677777888886 8899987
No 260
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=85.88 E-value=1.1 Score=36.84 Aligned_cols=63 Identities=19% Similarity=0.051 Sum_probs=42.8
Q ss_pred eEEEEeCCCchhhHHHHHHH-----HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 42 LINLIDSPGHVDFSSEVSTA-----VRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~~~~~-----l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
++.++|+||+..-......+ +...+..++ ++... ...+...+.+.+...+.|+++|.||.|+.
T Consensus 121 ~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~~-lS~G~-~~kqrv~la~aL~~~~~p~~lV~tkpdll 188 (413)
T 1tq4_A 121 NVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFII-ISATR-FKKNDIDIAKAISMMKKEFYFVRTKVDSD 188 (413)
T ss_dssp TEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEEE-EESSC-CCHHHHHHHHHHHHTTCEEEEEECCHHHH
T ss_pred CeeehHhhcccchHHHHHHHHHHcCCCccCCeEE-eCCCC-ccHHHHHHHHHHHhcCCCeEEEEecCccc
Confidence 68999999974311112222 333455554 77654 45667777777777889999999999986
No 261
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=85.76 E-value=1.3 Score=34.63 Aligned_cols=41 Identities=17% Similarity=0.016 Sum_probs=29.5
Q ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
+++++|.-............+..+...++|+. +|+|++.-.
T Consensus 223 ~~~vlV~~p~~~~~~~~~~~~~~l~~~gi~v~gvV~N~~~~~ 264 (324)
T 3zq6_A 223 TSFKMVVIPEEMSIYESERAMKALEKYSIHADGVIVNQVLPE 264 (324)
T ss_dssp EEEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECCS
T ss_pred CeEEEEeCCcccHHHHHHHHHHHHHHCCCCccEEEEcCCccc
Confidence 48888886654334555666777888899996 889998653
No 262
>3pg5_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 3.30A {Corynebacterium diphtheriae}
Probab=85.23 E-value=0.9 Score=36.22 Aligned_cols=34 Identities=15% Similarity=0.133 Sum_probs=27.6
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++|||||..- ......++..+|.+|+++.+.
T Consensus 153 ~yD~VIID~pP~l--~~~~~~aL~~aD~viip~~~~ 186 (361)
T 3pg5_A 153 RYDVIFFDVGPSL--GPFNRTVLLGCDAFVTPTATD 186 (361)
T ss_dssp CCSEEEEECCSCC--SHHHHHHHTTCSEEEEEECCS
T ss_pred CCCEEEEECCCCc--CHHHHHHHHHCCEEEEEecCC
Confidence 5789999999753 355677788899999999876
No 263
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=84.60 E-value=0.92 Score=35.33 Aligned_cols=63 Identities=13% Similarity=0.124 Sum_probs=35.3
Q ss_pred ceeEEEEeCCCchhhHHH----HHHHHH--hcCEEEEEEeCCCCCChhHHHHHHHHHHc-CCCc-EEEEECCcch
Q psy2609 40 EYLINLIDSPGHVDFSSE----VSTAVR--LCDGTIIVVDCVEGICAQTQVALKQAWLE-KIQP-ILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~----~~~~l~--~~d~~ilVvd~~~~~~~~~~~~~~~~~~~-~~p~-ilv~NK~Dl~ 106 (161)
.+.+.|+||||....... ....+. ..+.+++|+|++.+. . .+.+.+... .++. -++.||+|..
T Consensus 182 ~~dlvIiDT~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~~~--~--~~~~~~~~~~~l~~~giVltk~D~~ 252 (296)
T 2px0_A 182 EYDHVFVDTAGRNFKDPQYIDELKETIPFESSIQSFLVLSATAKY--E--DMKHIVKRFSSVPVNQYIFTKIDET 252 (296)
T ss_dssp GSSEEEEECCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTBCH--H--HHHHHTTTTSSSCCCEEEEECTTTC
T ss_pred CCCEEEEeCCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCCCH--H--HHHHHHHHHhcCCCCEEEEeCCCcc
Confidence 568999999997543221 222222 256789999987432 1 122222221 2232 4677999965
No 264
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=83.85 E-value=4.1 Score=34.35 Aligned_cols=65 Identities=14% Similarity=0.179 Sum_probs=35.0
Q ss_pred ceeEEEEeCCCchh----hHHH---HHHHHH-----hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 40 EYLINLIDSPGHVD----FSSE---VSTAVR-----LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 40 ~~~i~iiDTpG~~~----~~~~---~~~~l~-----~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
++.+.++||+|... +... .....+ ..+-++||+|++.|- .....++.....--.-.+++||+|-.
T Consensus 375 ~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq--~al~~ak~f~~~~~itgvIlTKLD~t 451 (503)
T 2yhs_A 375 NIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQ--NAVSQAKLFHEAVGLTGITLTKLDGT 451 (503)
T ss_dssp TCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTH--HHHHHHHHHHHHTCCSEEEEECGGGC
T ss_pred CCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccH--HHHHHHHHHHhhcCCCEEEEEcCCCc
Confidence 45689999999632 1111 111222 135789999987542 22222222222111236789999963
No 265
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=83.61 E-value=1.9 Score=34.06 Aligned_cols=64 Identities=22% Similarity=0.190 Sum_probs=36.4
Q ss_pred eeEEEEeCCCchh----hHHHHHHH--HHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 41 YLINLIDSPGHVD----FSSEVSTA--VRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 41 ~~i~iiDTpG~~~----~~~~~~~~--l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
+.+.++||+|... +....... .-..|-.++++|+..+ .+....++.....--.-++++||+|-.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~--~~~~~~~~~~~~~~~it~iilTKlD~~ 281 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAG--NAIVEQARQFNEAVKIDGIILTKLDAD 281 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGT--THHHHHHHHHHHHSCCCEEEEECGGGC
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHH--HHHHHHHHHHHHhcCCCEEEEeCcCCc
Confidence 4578899999632 22222211 1136889999998754 222233333322222347889999963
No 266
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=78.61 E-value=8.8 Score=30.27 Aligned_cols=39 Identities=13% Similarity=-0.093 Sum_probs=27.3
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
.+++|.-+..-.-......+..+...++|+. +|+|++-.
T Consensus 224 ~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 263 (334)
T 3iqw_A 224 TFVCVCIPEFLSLYETERMIQELANYGIDTHCIVVNQLLF 263 (334)
T ss_dssp EEEEEECSSHHHHHHHHHHHHHHHHTTCCEEEEEEEEECC
T ss_pred eEEEEECCCccHHHHHHHHHHHHHHCCCCccEEEECCCcC
Confidence 6777776543333445666777788899986 88999863
No 267
>3ez2_A Plasmid partition protein A; type IA, DNA binding, winged-HTH, DNA bindin; HET: ADP EPE; 2.05A {Escherichia coli} PDB: 3ez6_A* 3ez7_A
Probab=78.47 E-value=2.8 Score=33.51 Aligned_cols=34 Identities=21% Similarity=0.224 Sum_probs=27.3
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++|+|||+.-. ..+..++..+|.+|+|+...
T Consensus 244 ~yD~ViiD~pp~~~--~~~~~~l~~aD~vliv~~p~ 277 (398)
T 3ez2_A 244 DYDFILVDSGPHLD--AFLKNALASANILFTPLPPA 277 (398)
T ss_dssp TCSEEEEEECSCCS--HHHHHHHHHCSEEEEEECCS
T ss_pred cCCEEEEeCCCCcc--HHHHHHHHHCCEEEEEecCc
Confidence 57899999998753 34667788999999999764
No 268
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=77.97 E-value=3.4 Score=30.73 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=40.5
Q ss_pred ceeEEEEeCCCchh-----hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 40 EYLINLIDSPGHVD-----FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-----~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
.+-+.++|+||.-. .......+-....-+|+|+++..+.-.......+.+...++++. +++|+++-
T Consensus 110 ~~D~vlIEgaggl~~p~~~~~~~adla~~l~~pviLV~~~~~~~i~~~~~~~~~l~~~~~~i~GvIlN~~~~ 181 (228)
T 3of5_A 110 DLDILFIEGAGGLLTPYSDHTTQLDLIKALQIPVLLVSAIKVGCINHTLLTINELNRHNIKLAGWIANCNDS 181 (228)
T ss_dssp SCSEEEEEEEEETTCBSSSSCBHHHHHHHHTCCEEEEEECSTTHHHHHHHHHHHHHHTTCCEEEEEEEECCT
T ss_pred cCCEEEEECCCccccccccchhHHHHHHHcCCCEEEEEcCCcchHHHHHHHHHHHHhCCCcEEEEEEECcCC
Confidence 57799999997421 11112222222345788999875543444444555667788876 78999874
No 269
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=75.93 E-value=3.5 Score=32.32 Aligned_cols=40 Identities=13% Similarity=-0.028 Sum_probs=28.5
Q ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
+.+++|..............+..+...++|+. +|+|++..
T Consensus 222 t~~vlV~~pe~~~i~ea~~~~~~L~~~gi~v~gvVvN~~~~ 262 (329)
T 2woo_A 222 TTFVCVCISEFLSLYETERMIQELTSYEIDTHNIVVNQLLL 262 (329)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHHTCEEEEEEEEEECC
T ss_pred eEEEEEeCCCcchHHHHHHHHHHHHHCCCCCCEEEEeCCcC
Confidence 37888887654333455666777778899986 78999873
No 270
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=75.35 E-value=1.4 Score=37.30 Aligned_cols=43 Identities=9% Similarity=-0.034 Sum_probs=28.7
Q ss_pred hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 64 LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 64 ~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.++.+++|.......-......+..+...++++. +|+|++.-.
T Consensus 489 ~~~~vvlV~~p~~~~~~~a~~~~~~l~~~g~~~~gvVvN~~~~~ 532 (589)
T 1ihu_A 489 ERTKVLLVTLPETTPVLEAANLQADLERAGIHPWGWIINNSLSI 532 (589)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHHHHHHHTTCCCCEEEEEEESTT
T ss_pred CCCEEEEEeCCCccHHHHHHHHHHHHHHCCCCCCEEEEeCCcCC
Confidence 3578888887653333344555666777788874 889998753
No 271
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=72.99 E-value=5.2 Score=33.82 Aligned_cols=40 Identities=10% Similarity=0.016 Sum_probs=28.2
Q ss_pred EEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 67 ~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.+++|.......-......+..+...++++. +|+|++.-.
T Consensus 200 ~vvlV~~~~~~~~~~~~~~~~~L~~~g~~~~gvVlN~v~~~ 240 (589)
T 1ihu_A 200 RLVLVARLQKSTLQEVARTHLELAAIGLKNQYLVINGVLPK 240 (589)
T ss_dssp EEEEEEESCHHHHHHHHHHHHHHHHHTCCCEEEEEEEECCG
T ss_pred EEEEEeCCCccHHHHHHHHHHHHHhCCCCCCEEEEcCCcCc
Confidence 6888888764333445566677777788875 789998754
No 272
>1s2d_A Purine trans deoxyribosylase; ribosylate intermediate, PTD, ARAA, transferase; HET: AR4 ADE; 2.10A {Lactobacillus helveticus} SCOP: c.23.14.1 PDB: 1s2g_A* 1s2i_A* 1s2l_A 1s3f_A*
Probab=71.30 E-value=12 Score=26.55 Aligned_cols=45 Identities=11% Similarity=-0.016 Sum_probs=32.8
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEE
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVL 100 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~ 100 (161)
...-...++.||++|.++|+. .+...+..-+.+....++|++++-
T Consensus 72 ~~~D~~~i~~aD~vVA~ldg~-~~D~GTa~EiGyA~algKPVv~l~ 116 (167)
T 1s2d_A 72 YQNDLTGISNATCGVFLYDMD-QLDDGSAFXIGFMRAMHKPVILVP 116 (167)
T ss_dssp HHHHHHHHHHCSEEEEEEESS-SCCHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHhCCEEEEECCCC-CCCCCceeehhhHhhCCCeEEEEE
Confidence 334556789999999999974 334555555567778899998873
No 273
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=70.50 E-value=3.9 Score=32.54 Aligned_cols=40 Identities=13% Similarity=-0.045 Sum_probs=28.1
Q ss_pred CEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcc
Q psy2609 66 DGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDR 105 (161)
Q Consensus 66 d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl 105 (161)
..+++|.-...-.-......+..+...++|+. +|+|++.-
T Consensus 232 t~~vlVt~pe~~~~~ea~r~~~~L~~~gi~v~gvVvN~~~~ 272 (348)
T 3io3_A 232 TTFICVCISEFLSLYETERMIQELMSYNMDVNSIVVNQLLF 272 (348)
T ss_dssp EEEEEEEESSHHHHHHHHHHHHHHHHTTCCCCEEEEEEECC
T ss_pred eEEEEEecCCccHHHHHHHHHHHHHHCCCCccEEEEcCCcc
Confidence 46777776653333445666777778899985 88999865
No 274
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=66.71 E-value=21 Score=27.66 Aligned_cols=63 Identities=21% Similarity=0.269 Sum_probs=34.9
Q ss_pred eeEEEEeCCCchh----hHHH---HHHHH-----HhcCEEEEEEeCCCCCChhHHHHHHHHH-HcCCCcEEEEECCcch
Q psy2609 41 YLINLIDSPGHVD----FSSE---VSTAV-----RLCDGTIIVVDCVEGICAQTQVALKQAW-LEKIQPILVLNKIDRL 106 (161)
Q Consensus 41 ~~i~iiDTpG~~~----~~~~---~~~~l-----~~~d~~ilVvd~~~~~~~~~~~~~~~~~-~~~~p~ilv~NK~Dl~ 106 (161)
+.+.++||+|... +... ...++ ...+.+++++|+..+.. ....+.... ..+ ..++++||.|..
T Consensus 185 ~d~~llDt~G~~~~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLDa~t~~~--~~~~~~~~~~~~~-~t~iivTh~d~~ 260 (304)
T 1rj9_A 185 YDLLFVDTAGRLHTKHNLMEELKKVKRAIAKADPEEPKEVWLVLDAVTGQN--GLEQAKKFHEAVG-LTGVIVTKLDGT 260 (304)
T ss_dssp CSEEEECCCCCCTTCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEETTBCTH--HHHHHHHHHHHHC-CSEEEEECTTSS
T ss_pred CCEEEecCCCCCCchHHHHHHHHHHHHHHHHhhcCCCCeEEEEEcHHHHHH--HHHHHHHHHHHcC-CcEEEEECCccc
Confidence 4577999999632 1111 11111 12567888999875532 222222222 223 357889999864
No 275
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=66.47 E-value=19 Score=25.23 Aligned_cols=47 Identities=9% Similarity=-0.062 Sum_probs=35.0
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCc
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 104 (161)
...-...++.||++|..++ .....+..-+.+....++|++++.++.+
T Consensus 68 ~~~d~~~i~~aD~vva~~~---~~d~Gt~~EiGyA~algKPVi~l~~~~~ 114 (165)
T 2khz_A 68 HEQDLNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFRPQS 114 (165)
T ss_dssp HHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTCSSEEEEECTTT
T ss_pred HHHHHHHHHhCCEEEEECC---CCCCCHHHHHHHHHHCCCEEEEEEcCCC
Confidence 3445678999999999886 3455555556777888999999877664
No 276
>3fgn_A Dethiobiotin synthetase; biotin biosynthesis, BIOD, ATP-BIND ligase, magnesium, nucleotide-binding; 1.85A {Mycobacterium tuberculosis} PDB: 3fmf_A* 3fmi_A* 3fpa_A*
Probab=66.21 E-value=11 Score=28.47 Aligned_cols=65 Identities=17% Similarity=0.242 Sum_probs=40.2
Q ss_pred ceeEEEEeCCCch-----hh-HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCc
Q psy2609 40 EYLINLIDSPGHV-----DF-SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~-----~~-~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~D 104 (161)
.+-+.++|+||-- +. ......+-....-+|+|+++..+.-......++.+...++++. +++||+.
T Consensus 126 ~~D~vlIEGagGl~~pl~~~~~~~adla~~l~~pVILV~~~~~g~i~~~~lt~~~l~~~g~~i~GvIlN~v~ 197 (251)
T 3fgn_A 126 PGRLTLVEGAGGLLVELAEPGVTLRDVAVDVAAAALVVVTADLGTLNHTKLTLEALAAQQVSCAGLVIGSWP 197 (251)
T ss_dssp TTCEEEEECSSSTTCEEETTTEEHHHHHHHTTCEEEEEECSSTTHHHHHHHHHHHHHHTTCCEEEEEEEEEC
T ss_pred cCCEEEEECCCCCcCCcCcccchHHHHHHHcCCCEEEEEcCCCccHHHHHHHHHHHHhCCCCEEEEEEECCC
Confidence 5679999999742 11 1122222233457889999876543444444555666788887 7899973
No 277
>2f62_A Nucleoside 2-deoxyribosyltransferase; SGPP, structural genomics, PSI, S genomics of pathogenic protozoa consortium; HET: 12M; 1.50A {Trypanosoma brucei} SCOP: c.23.14.1 PDB: 2a0k_A* 2f2t_A* 2f64_A* 2f67_A*
Probab=66.12 E-value=12 Score=26.46 Aligned_cols=51 Identities=14% Similarity=0.079 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHhcCEEEEEEeCCCC--CChhHHHHHHHHHHcCCCcEEEEECC
Q psy2609 53 DFSSEVSTAVRLCDGTIIVVDCVEG--ICAQTQVALKQAWLEKIQPILVLNKI 103 (161)
Q Consensus 53 ~~~~~~~~~l~~~d~~ilVvd~~~~--~~~~~~~~~~~~~~~~~p~ilv~NK~ 103 (161)
.....-...++.||++|.++|.-.| +...+..-+.+....++|++++.+..
T Consensus 56 ~i~~~d~~~i~~aD~vVA~ldpf~g~~~D~GTafEiGyA~AlgKPVi~l~~d~ 108 (161)
T 2f62_A 56 DIRQKNIQMIKDCDAVIADLSPFRGHEPDCGTAFEVGCAAALNKMVLTFTSDR 108 (161)
T ss_dssp HHHHHHHHHHHHCSEEEEECCCCSSSSCCHHHHHHHHHHHHTTCEEEEECSCC
T ss_pred HHHHHHHHHHHhCCEEEEEecCCCCCCCCCcHHHHHHHHHHCCCEEEEEEcCc
Confidence 3444557889999999999985323 33444444566778899999887653
No 278
>4fyk_A Deoxyribonucleoside 5'-monophosphate N-glycosidas; hydrolas; HET: SRA; 1.79A {Rattus norvegicus} PDB: 4fyh_A* 4fyi_A* 2klh_A*
Probab=63.75 E-value=23 Score=24.85 Aligned_cols=45 Identities=9% Similarity=-0.038 Sum_probs=34.1
Q ss_pred hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEE
Q psy2609 54 FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLN 101 (161)
Q Consensus 54 ~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~N 101 (161)
....-...++.||++|.+++ .+...+..-+.+....++|++++.+
T Consensus 58 i~~~d~~~i~~aD~vvA~l~---~~d~Gt~~EiG~A~algkPV~~l~~ 102 (152)
T 4fyk_A 58 IHEQNLNWLQQADVVVAEVT---QPSLGVGYELGRAVALGKPILCLFR 102 (152)
T ss_dssp HHHHHHHHHHHCSEEEEECS---SCCHHHHHHHHHHHHTTCCEEEEEC
T ss_pred HHHHHHHHHHHCCEEEEeCC---CCCCCHHHHHHHHHHcCCeEEEEEe
Confidence 44556677899999999887 3456666666777788999998776
No 279
>3v7e_A Ribosome-associated protein L7AE-like; RNA-protein complex, K-turn, L7AE-like, A member L7AE/L30E superfamily; HET: SAM; 2.80A {Bacillus subtilis}
Probab=62.96 E-value=9.4 Score=23.68 Aligned_cols=50 Identities=14% Similarity=-0.068 Sum_probs=35.6
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..+++...+-++++..+-.+ .....+..++...++|++.+.+|.+|-
T Consensus 17 ~~v~kai~~gkaklViiA~D~~~-~~~~~i~~lc~~~~Ip~~~v~sk~eLG 66 (82)
T 3v7e_A 17 KQTVKALKRGSVKEVVVAKDADP-ILTSSVVSLAEDQGISVSMVESMKKLG 66 (82)
T ss_dssp HHHHHHHTTTCEEEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHHHcCCeeEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 46777888878888888765433 333445566777899999998887763
No 280
>3j21_Z 50S ribosomal protein L30E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=62.85 E-value=21 Score=22.73 Aligned_cols=50 Identities=12% Similarity=-0.039 Sum_probs=33.8
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE-EECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv-~NK~Dl~ 106 (161)
.++..+++...+-++++..+ .+......+...+...++|++.+ .+|.+|-
T Consensus 21 ~~v~kai~~gka~lViiA~D-~~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG 71 (99)
T 3j21_Z 21 NETIRLAKTGGAKLIIVAKN-APKEIKDDIYYYAKLSDIPVYEFEGTSVELG 71 (99)
T ss_dssp HHHHHHHHHTCCSEEEEECC-CCHHHHHHHHHHHHHTTCCEEEECCCSCGGG
T ss_pred HHHHHHHHcCCccEEEEeCC-CCHHHHHHHHHHHHHcCCCEEEeCCCHHHHH
Confidence 46777787767767777655 33333445556667789998766 9998884
No 281
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=61.92 E-value=16 Score=27.44 Aligned_cols=66 Identities=9% Similarity=0.090 Sum_probs=39.6
Q ss_pred ceeEEEEeCCCchh-----hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVD-----FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-----~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
.+-+.++|.||.-. .......+-....-+|+|+++..+.-......++.+...+++.=+++|+++-
T Consensus 131 ~~D~vlIEGagGl~~pl~~~~~~adlA~~l~~pVILV~~~~lg~i~~~~lt~~~l~~~g~~~GvIlN~v~~ 201 (242)
T 3qxc_A 131 TYDLVIVEGAGGLCVPITLEENMLDFALKLKAKMLLISHDNLGLINDCLLNDFLLKSHQLDYKIAINLKGN 201 (242)
T ss_dssp TCSEEEEECCSCTTCBSSSSCBHHHHHHHHTCEEEEEECCSTTHHHHHHHHHHHHHTSSSCEEEEECCCTT
T ss_pred cCCEEEEECCCCccccccccchHHHHHHHcCCCEEEEEcCCCcHHHHHHHHHHHHHhCCCCEEEEEeCCCC
Confidence 46799999998421 1111222222234578899887664344444455666678883388999874
No 282
>3ehd_A Uncharacterized conserved protein; PSI,MCSG,PF05014, structural genomics, protein structure INI midwest center for structural genomics; HET: MSE; 2.15A {Enterococcus faecalis}
Probab=60.73 E-value=18 Score=25.64 Aligned_cols=49 Identities=14% Similarity=0.108 Sum_probs=34.6
Q ss_pred hHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECC
Q psy2609 54 FSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKI 103 (161)
Q Consensus 54 ~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 103 (161)
....-...++.||++|.++|... +...+..-+.+....++|++++.+-.
T Consensus 59 i~~~D~~~i~~aD~viA~ldg~~-~D~Gt~~EiG~A~a~gkPVi~~~~D~ 107 (162)
T 3ehd_A 59 IALADTENVLASDLLVALLDGPT-IDAGVASEIGVAYAKGIPVVALYTDS 107 (162)
T ss_dssp HHHHHHHHHHTCSEEEEECCSSS-CCHHHHHHHHHHHHTTCCEEEECCCG
T ss_pred HHHHHHHHHHHCCEEEEECCCCC-CCCCHHHHHHHHHHCCCEEEEEEcCc
Confidence 44456677999999999998642 34455555567778899988876543
No 283
>2xzm_U Ribosomal protein L7AE containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_U
Probab=58.90 E-value=15 Score=24.84 Aligned_cols=51 Identities=10% Similarity=-0.033 Sum_probs=34.3
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..+++...+-++++..+-.+......+..++...++|++.+.+|.+|-
T Consensus 30 ~~v~Kai~~gka~LViiA~D~~p~~~~~~i~~lc~~~~Ip~~~v~sk~~LG 80 (126)
T 2xzm_U 30 HEVLRTIEAKQALFVCVAEDCDQGNYVKLVKALCAKNEIKYVSVPKRASLG 80 (126)
T ss_dssp HHHHHHHHHTCCSEEEEESSCCSTTHHHHHHHHHHHTTCCEEEESCSHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 466777777677677776554333333455566777899999988887763
No 284
>2ale_A SNU13, NHP2/L7AE family protein YEL026W; splicing, RNA, yeast, His-TAG, RNA binding protein; 1.80A {Saccharomyces cerevisiae} SCOP: d.79.3.1 PDB: 1zwz_A 2ozb_A 3siu_A 3siv_A 1e7k_A
Probab=58.19 E-value=12 Score=25.59 Aligned_cols=52 Identities=6% Similarity=-0.075 Sum_probs=36.8
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..++..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 37 ~~~v~kai~~gkakLViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG 88 (134)
T 2ale_A 37 ANEATKTLNRGISEFIIMAADCEPIEILLHLPLLCEDKNVPYVFVPSRVALG 88 (134)
T ss_dssp HHHHHHHHHHTCEEEEEEETTCSSGGGGTHHHHHHHHHTCCEEEESCHHHHH
T ss_pred chHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHH
Confidence 3467778888888888887664433234455566777899999998888873
No 285
>1eiw_A Hypothetical protein MTH538; CHEY-like fold, flavodoxin-like fold, (A/B)5 doubly wound fold, parallel beta sheet; NMR {Methanothermobacterthermautotrophicus} SCOP: c.23.3.1
Probab=57.08 E-value=5.8 Score=26.39 Aligned_cols=39 Identities=15% Similarity=-0.009 Sum_probs=26.7
Q ss_pred HHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE
Q psy2609 61 AVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV 99 (161)
Q Consensus 61 ~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv 99 (161)
.++.++++|++++....-+.+-..-+..+.+.++|++.|
T Consensus 35 ~I~~~~~vIvL~G~~t~~s~wv~~EI~~A~~~gkpIigV 73 (111)
T 1eiw_A 35 TPEDADAVIVLAGLWGTRRDEILGAVDLARKSSKPIITV 73 (111)
T ss_dssp CSSSCSEEEEEGGGTTTSHHHHHHHHHHHTTTTCCEEEE
T ss_pred ccccCCEEEEEeCCCcCCChHHHHHHHHHHHcCCCEEEE
Confidence 356688888888766444455555556677789998765
No 286
>3hyn_A Putative signal transduction protein; DUF1863 family protein, nucleotide-binding protein, structur genomics; HET: MSE; 1.20A {Eubacterium rectale atcc 33656}
Probab=56.56 E-value=28 Score=25.41 Aligned_cols=55 Identities=7% Similarity=0.147 Sum_probs=36.2
Q ss_pred EeCCC-chhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHH-HcCCCcEEEE
Q psy2609 46 IDSPG-HVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAW-LEKIQPILVL 100 (161)
Q Consensus 46 iDTpG-~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~-~~~~p~ilv~ 100 (161)
.|+.. -+-..+..+.-++.+..+|+++.-...-..+...-++... ..++|+|+|-
T Consensus 60 rDsS~~e~tIKrrLReRI~~Sk~vIllIs~~T~~s~~v~wEIe~Ai~~~~~PII~Vy 116 (189)
T 3hyn_A 60 RDGSDWEKTLKPRLHTRLDNSKNIILFLSSITANSRALREEMNYGIGTKGLPVIVIY 116 (189)
T ss_dssp TSCCCTTTTHHHHHHHHHHTEEEEEEECCTTCCCCHHHHHHHHHHTTTTCCCEEEEE
T ss_pred cccccHHHHHHHHHHHHHHhcCcEEEEEecCccccchhHHHHHHHHHhcCCcEEEEE
Confidence 45555 4446677888899999999999765433333333344444 5689988764
No 287
>2lbw_A H/ACA ribonucleoprotein complex subunit 2; L7AE, snoRNP, scaRNP, RNA binding protein; NMR {Saccharomyces cerevisiae} PDB: 2lbx_A
Probab=55.99 E-value=12 Score=25.10 Aligned_cols=52 Identities=15% Similarity=-0.011 Sum_probs=35.8
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..++..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 25 ~~~v~kai~~gkakLViiA~D~~~~~~~~~l~~lc~~~~VP~~~v~sk~eLG 76 (121)
T 2lbw_A 25 VKEVVKALRKGEKGLVVIAGDIWPADVISHIPVLCEDHSVPYIFIPSKQDLG 76 (121)
T ss_dssp HHHHHHHHHHSCCCEEEECTTCSCTTHHHHHHHHHHHTCCCEEECCCHHHHH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHhcCCcEEEECCHHHHH
Confidence 3467778887777777776654332234455566777899999988887763
No 288
>2aif_A Ribosomal protein L7A; high-mobility like protein, transcription factor, structural genomics, structural genomics consortium, SGC; 1.90A {Cryptosporidium parvum} SCOP: d.79.3.1
Probab=55.08 E-value=18 Score=24.67 Aligned_cols=51 Identities=10% Similarity=-0.068 Sum_probs=34.9
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+..+++...+-++++..+-........+...+...++|++.+.+|.+|-
T Consensus 47 ~~v~kal~~gkaklViiA~D~~~~~~~~~l~~lc~~~~IP~~~v~sk~eLG 97 (135)
T 2aif_A 47 NEATKALNRGIAEIVLLAADAEPLEILLHLPLVCEDKNTPYVFVRSKVALG 97 (135)
T ss_dssp HHHHHHHHTTCEEEEEEETTCSCHHHHHHHHHHHHHTTCCEEEESCHHHHH
T ss_pred HHHHHHHHcCCCeEEEEecCCChHHHHhHHHHHHHhcCCcEEEECCHHHHH
Confidence 356777777777777776653332223556666777899999988887763
No 289
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=52.15 E-value=12 Score=29.73 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=26.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-++++|||... ...+...+..+|.+++|+...
T Consensus 259 ~yD~VIID~p~~~--~~~~~~~l~~aD~vivv~~~~ 292 (373)
T 3fkq_A 259 NYDEIIVDLPFSL--EIEKLKLLSKAWRIIVVNDGS 292 (373)
T ss_dssp CCSEEEEECCCCC--CHHHHHHHTTCSEEEEEECCC
T ss_pred CCCEEEEeCCCCC--CHHHHHHHHHCCEEEEEecCC
Confidence 6789999999543 335667788999999999765
No 290
>1f8y_A Nucleoside 2-deoxyribosyltransferase; active site, alpha/beta protein, biocatalyst, X- RAY crystallography; HET: 5MD; 2.40A {Lactobacillus leichmannii} SCOP: c.23.14.1 PDB: 1f8x_A*
Probab=51.51 E-value=18 Score=25.30 Aligned_cols=47 Identities=15% Similarity=-0.043 Sum_probs=33.2
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEEC
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNK 102 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK 102 (161)
...-...++.||++|.++|+.. +...+..-+.+....++|++++-.+
T Consensus 69 ~~~D~~~i~~aD~vvA~ldg~~-~D~GT~~EiGyA~A~gkPVv~~~~~ 115 (157)
T 1f8y_A 69 YNNDLNGIKTNDIMLGVYIPDE-EDVGLGMELGYALSQGKYVLLVIPD 115 (157)
T ss_dssp HHHHHHHHHTSSEEEEECCGGG-CCHHHHHHHHHHHHTTCEEEEEECG
T ss_pred HHHhHHHHHhCCEEEEEcCCCC-CCccHHHHHHHHHHCCCeEEEEEcC
Confidence 3445667889999999998542 3344555556777889999887643
No 291
>3v7q_A Probable ribosomal protein YLXQ; L7AE superfamily, K-turn binding, K-turn RNA, hypothetical R protein, RNA binding protein; HET: CIT; 1.55A {Bacillus subtilis}
Probab=48.67 E-value=13 Score=23.95 Aligned_cols=50 Identities=8% Similarity=-0.018 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+..+++...+-++++..+-. ......+...+...++|++.+.+|.+|-
T Consensus 25 ~~v~kai~~gka~lViiA~D~~-~~~~~~i~~~c~~~~vp~~~~~s~~eLG 74 (101)
T 3v7q_A 25 DLVIKEIRNARAKLVLLTEDAS-SNTAKKVTDKCNYYKVPYKKVESRAVLG 74 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSC-HHHHHHHHHHHHHTTCCEEEESCHHHHH
T ss_pred hhhHHHHhcCceeEEEEecccc-ccchhhhcccccccCCCeeeechHHHHH
Confidence 3567777776766666655432 2333444556677899999998888874
No 292
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=45.73 E-value=31 Score=28.13 Aligned_cols=97 Identities=6% Similarity=0.011 Sum_probs=49.2
Q ss_pred CccccccccCCchhHHH-cCCccccceEEEE-eecCCCCCCceeEEEEeCCCch--hhHHHH--------HHHHHhcCEE
Q psy2609 1 MLCMVSSYMDSRKDEQE-RGITMKSSSISLY-YKDNKDTPEEYLINLIDSPGHV--DFSSEV--------STAVRLCDGT 68 (161)
Q Consensus 1 ~~~g~~~~~D~~~~E~~-~giti~~~~~~~~-~~~~~~~~~~~~i~iiDTpG~~--~~~~~~--------~~~l~~~d~~ 68 (161)
|.||||++...+..... .++ ++...... +... ..+......+||+.|.+ ++...+ ..++..+.+.
T Consensus 48 pGsGKSTia~~La~~l~~~~~--~t~~~~~d~~r~~-~~g~~~~~~ifd~~g~~~~r~re~~~~~~l~~~~~~l~~~~G~ 124 (469)
T 1bif_A 48 PARGKTYISKKLTRYLNFIGV--PTREFNVGQYRRD-MVKTYKSFEFFLPDNEEGLKIRKQCALAALNDVRKFLSEEGGH 124 (469)
T ss_dssp TTSSHHHHHHHHHHHHHHTTC--CEEEEEHHHHHHH-HHCSCCCGGGGCTTCHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred CCCCHHHHHHHHHHHHhccCC--CceEEecchhhhh-hccCCCcccccCCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 46899998876654432 222 11111100 0000 00111234578999973 233332 5566667898
Q ss_pred EEEEeCCCCCChhHHHHHHHHHHcCCCcEEEE
Q psy2609 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVL 100 (161)
Q Consensus 69 ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~ 100 (161)
++|+|++......-..+...+...+.+++.+-
T Consensus 125 ~vV~D~tn~~~~~R~~~~~~~~~~~~~vv~l~ 156 (469)
T 1bif_A 125 VAVFDATNTTRERRAMIFNFGEQNGYKTFFVE 156 (469)
T ss_dssp EEEEESCCCSHHHHHHHHHHHHHHTCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHHHHHhcCCcEEEEE
Confidence 99999986533222333344445565655444
No 293
>1xbi_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich fold, RNA binding protein/structural protein complex; HET: EPE; 1.45A {Methanocaldococcus jannaschii} SCOP: d.79.3.1 PDB: 1ra4_A* 1sds_A 3paf_A
Probab=44.56 E-value=14 Score=24.57 Aligned_cols=52 Identities=15% Similarity=-0.050 Sum_probs=33.4
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
...+..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 34 ~~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG 85 (120)
T 1xbi_A 34 ANEVTKAVERGIAKLVIIAEDVKPEEVVAHLPYLCEEKGIPYAYVASKQDLG 85 (120)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHhcCCCEEEeCCHHHHH
Confidence 3467777777666666665543232223445566677799998888888773
No 294
>1w41_A 50S ribosomal protein L30E; electrostatic interactions, thermostability, protein engineering; 1.7A {Thermococcus celer} SCOP: d.79.3.1 PDB: 3n4y_A 3lfo_A 1w40_A 1go0_A 1go1_A 1h7m_A 1w42_A 1w3e_X 3ra6_A 3ra5_A 3n4z_A 2bo1_A
Probab=43.97 E-value=22 Score=22.67 Aligned_cols=49 Identities=10% Similarity=-0.028 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE-EECCcc
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKIDR 105 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv-~NK~Dl 105 (161)
..+..+++...+-++++..+ .+......+...+...++|++.+ .+|.+|
T Consensus 22 ~~v~kai~~gka~lViiA~D-~~~~~~~~l~~~c~~~~vp~~~~~~s~~eL 71 (101)
T 1w41_A 22 RKSIQYAKMGGAKLIIVARN-ARPDIKEDIEYYARLSGIPVYEFEGTSVEL 71 (101)
T ss_dssp HHHHHHHHHTCCSEEEEETT-SCHHHHHHHHHHHHHHTCCEEEESSCHHHH
T ss_pred HHHHHHHHcCCCcEEEEeCC-CCHHHHHHHHHHHHhcCCCEEEecCCHHHH
Confidence 45677777777777777665 33333344555666779998775 777766
No 295
>3iz5_f 60S ribosomal protein L30 (L30E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_f
Probab=42.92 E-value=24 Score=23.31 Aligned_cols=50 Identities=20% Similarity=0.074 Sum_probs=34.6
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE-EECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv-~NK~Dl~ 106 (161)
.++..+++...+-++++..+-+ ......+..++...++|++.+ .+|.+|-
T Consensus 32 ~~t~kai~~gkakLVilA~D~~-~~~~~~i~~~c~~~~ipv~~~~~s~~eLG 82 (112)
T 3iz5_f 32 KTVLKTLRSSLGKLIILANNCP-PLRKSEIETYAMLAKISVHHFHGNNVDLG 82 (112)
T ss_dssp HHHHHHHHTTCCSEEEECSCCC-HHHHHHHHHHHHHTTCCEECCCCTTCTHH
T ss_pred HHHHHHHHcCCceEEEEeCCCC-HHHHHHHHHHHHHcCCcEEEeCCCHHHHH
Confidence 4677788877776777755432 233344556667789999988 8998874
No 296
>3on1_A BH2414 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; HET: MSE; 1.65A {Bacillus halodurans}
Probab=42.27 E-value=19 Score=23.04 Aligned_cols=50 Identities=20% Similarity=0.127 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+..+++...+-++++..+-.. .....+...+...++|++.+.+|.+|-
T Consensus 24 ~~v~kai~~gka~lViiA~D~~~-~~~~~i~~~c~~~~ip~~~~~s~~eLG 73 (101)
T 3on1_A 24 EQVVKAVQNGQVTLVILSSDAGI-HTKKKLLDKCGSYQIPVKVVGNRQMLG 73 (101)
T ss_dssp HHHHHHHHTTCCSEEEEETTSCH-HHHHHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHHHcCCCcEEEEeCCCCH-HHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 45677777767666666554322 233445556667899999998888774
No 297
>1rlg_A 50S ribosomal protein L7AE; protein-RNA, structural protein/RNA complex; HET: 5BU; 2.70A {Archaeoglobus fulgidus} SCOP: d.79.3.1
Probab=42.02 E-value=15 Score=24.39 Aligned_cols=51 Identities=14% Similarity=-0.079 Sum_probs=31.6
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 33 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG 83 (119)
T 1rlg_A 33 NETTKAVERGLAKLVYIAEDVDPPEIVAHLPLLCEEKNVPYIYVKSKNDLG 83 (119)
T ss_dssp HHHHHHHTTTCCSEEEEESCCSCSTTTTHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHHHcCCCcEEEEeCCCChHHHHHHHHHHHHHcCCCEEEeCCHHHHH
Confidence 356667766566666665543222223445556667799988888887763
No 298
>1vq8_F 50S ribosomal protein L7AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.79.3.1 PDB: 1vq4_F* 1vq5_F* 1vq6_F* 1vq7_F* 1s72_F* 1vq9_F* 1vqk_F* 1vql_F* 1vqm_F* 1vqn_F* 1vqo_F* 1vqp_F* 1yhq_F* 1yi2_F* 1yij_F* 1yit_F* 1yj9_F* 1yjn_F* 1yjw_F* 2otj_F* ...
Probab=41.38 E-value=16 Score=24.28 Aligned_cols=51 Identities=12% Similarity=-0.060 Sum_probs=32.1
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 35 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~~~sk~eLG 85 (120)
T 1vq8_F 35 NETTKSIERGSAELVFVAEDVQPEEIVMHIPELADEKGVPFIFVEQQDDLG 85 (120)
T ss_dssp HHHHHHHHHTCCSEEEEESCCSSGGGTTTHHHHHHTTCCCEEEESCHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHH
Confidence 456677777666666665543222223444556667799998888888763
No 299
>2fc3_A 50S ribosomal protein L7AE; alpha-beta-alpha sandwich, ribosome, RNA binding protein; 1.56A {Aeropyrum pernix} SCOP: d.79.3.1 PDB: 3pla_C* 3id5_C* 3hax_D* 2hvy_D* 3hay_D* 3nvi_B 3nmu_C 3nvk_E* 3lwr_C 3lwo_C* 3lwq_C* 3lwp_C 3lwv_C 3hjw_C* 2czw_A 1pxw_A
Probab=40.62 E-value=18 Score=24.23 Aligned_cols=51 Identities=16% Similarity=-0.074 Sum_probs=32.7
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 34 ~~v~kal~~gka~lViiA~D~~~~~~~~~l~~lc~~~~Vp~~~v~sk~eLG 84 (124)
T 2fc3_A 34 NETTKAVERGLAKLVVIAEDVDPPEIVMHLPLLCDEKKIPYVYVPSKKRLG 84 (124)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGTTTHHHHHHHTTCCEEEESCHHHHH
T ss_pred HHHHHHHHcCCceEEEEcCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 356677777666666665543222223445556667899998888888773
No 300
>3imk_A Putative molybdenum carrier protein; YP_461806.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE MES PG4 PG6; 1.45A {Syntrophus aciditrophicus SB}
Probab=40.23 E-value=95 Score=21.87 Aligned_cols=52 Identities=21% Similarity=0.178 Sum_probs=37.9
Q ss_pred EEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE
Q psy2609 45 LIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV 99 (161)
Q Consensus 45 iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv 99 (161)
+--||.. .+..-+....+.+|+.+++.. ..++..+..-...+.+.++|++++
T Consensus 55 L~E~~~~-~y~~Rt~~NV~DSDgTLI~~~--g~lsGGT~lT~~~a~~~~KP~l~i 106 (158)
T 3imk_A 55 LQEMPTS-DYSKRTEKNVLDSDGTLIISH--GILKGGSALTEFFAEQYKKPCLHI 106 (158)
T ss_dssp CEECSSC-CHHHHHHHHHHTSSEEEEEES--SSCCHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccCCC-CHHHHHHHhhhhcCeEEEEec--CCCCCchHHHHHHHHHhCCCEEEE
Confidence 4444442 345677888999999999883 356777777778888889998763
No 301
>3jyw_G 60S ribosomal protein L8(A); eukaryotic ribosome, RACK1 protein, flexible fitting; 8.90A {Thermomyces lanuginosus} PDB: 1s1i_G
Probab=39.19 E-value=19 Score=23.99 Aligned_cols=52 Identities=6% Similarity=-0.110 Sum_probs=34.6
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..++..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 30 ~~~v~kaI~~gka~LVvIA~D~~p~~i~~~l~~lC~~~~VP~~~v~sk~~LG 81 (113)
T 3jyw_G 30 LNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG 81 (113)
T ss_dssp HHHHHHTTTTTCCSEEEECSCCSSHHHHTTHHHHHHHTTCCCEECSCSTTTH
T ss_pred HHHHHHHHHcCCceEEEEeCCCCHHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 4567777777666666665543222223344566778899999999998874
No 302
>3cpq_A 50S ribosomal protein L30E; RNA-protein, elongation factor, ribonucleoprotein, structural genomics, NPPSFA; 1.90A {Methanocaldococcus jannaschii}
Probab=39.18 E-value=21 Score=23.29 Aligned_cols=50 Identities=12% Similarity=0.013 Sum_probs=32.5
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEE-EECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv-~NK~Dl~ 106 (161)
..+..+++...+-++++..+- +......+...+...++|++.+ .+|.+|-
T Consensus 27 ~~v~kai~~gka~lViiA~D~-~~~~~~~l~~~c~~~~Vp~~~~~~sk~eLG 77 (110)
T 3cpq_A 27 KRTIKFVKHGEGKLVVLAGNI-PKDLEEDVKYYAKLSNIPVYQHKITSLELG 77 (110)
T ss_dssp HHHHHHHHTTCCSEEEECTTC-BHHHHHHHHHHHHHTTCCEEECCSCHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEEcCCHHHHH
Confidence 456777777677677775543 3333344556666779998876 7877763
No 303
>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}
Probab=37.93 E-value=91 Score=23.57 Aligned_cols=61 Identities=8% Similarity=-0.023 Sum_probs=38.5
Q ss_pred ceeEEEEeCCCchh-hHHHHHHHHH---hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVD-FSSEVSTAVR---LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~-~~~~~~~~l~---~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
++.+.+.++.+... ........+. .+|++|++- . .......++.+...++|+|++.+..+.
T Consensus 34 g~~~~~~~~~~~~~~~~~~i~~~i~~~~~vDgiIi~~--~---~~~~~~~~~~~~~~giPvV~~~~~~~~ 98 (350)
T 3h75_A 34 GLDLRILYAERDPQNTLQQARELFQGRDKPDYLMLVN--E---QYVAPQILRLSQGSGIKLFIVNSPLTL 98 (350)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHHSSSCCSEEEEEC--C---SSHHHHHHHHHTTSCCEEEEEESCCCT
T ss_pred CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEeC--c---hhhHHHHHHHHHhCCCcEEEEcCCCCh
Confidence 45677777766432 3445556665 789988753 2 123344556666779999998877654
No 304
>3o85_A Ribosomal protein L7AE; alpha beta sandwich fold, K-turn RNA binding protein, KINK T ribosomal protein; 1.81A {Giardia lamblia}
Probab=37.20 E-value=19 Score=24.05 Aligned_cols=51 Identities=6% Similarity=-0.078 Sum_probs=33.4
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..+..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 37 ~~v~kai~~gka~lViiA~D~~p~~~~~~l~~lc~~~~VP~~~v~sk~eLG 87 (122)
T 3o85_A 37 NEALKQVNRGKAELVIIAADADPIEIVLHLPLACEDKGVPYVFIGSKNALG 87 (122)
T ss_dssp HHHHHHHHTTCCSEEEEETTCSSGGGGTTHHHHHHTTTCCEEEESCHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 456777777666666676553332223445556677899998999888873
No 305
>3izc_H 60S ribosomal protein RPL8 (L7AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_H 3o58_H 3o5h_H 3u5e_G 3u5i_G 4b6a_G
Probab=34.11 E-value=30 Score=26.48 Aligned_cols=52 Identities=6% Similarity=-0.110 Sum_probs=36.3
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
..++..+++...+-++|+..+-........+..++...++|.+.+.+|.+|-
T Consensus 136 ~keV~KaIekgKAkLVVIA~DadP~eivk~LpaLC~k~gVPy~~V~sK~eLG 187 (256)
T 3izc_H 136 LNHVVALIENKKAKLVLIANDVDPIELVVFLPALCKKMGVPYAIVKGKARLG 187 (256)
T ss_dssp HHHHHHHHHHTCCSEEEEESCCSSGGGTTHHHHHHHHHTCCEEEESCHHHHH
T ss_pred HHHHHHHHHhCcceEEEEeCCCChHHHHHHHHHHHHhcCCCEEEECCHHHHH
Confidence 4567788887777777776554333333444566778899999999998873
No 306
>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}
Probab=32.94 E-value=90 Score=22.78 Aligned_cols=60 Identities=10% Similarity=-0.048 Sum_probs=33.9
Q ss_pred CceeEEEEeCCCchhhHHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCc
Q psy2609 39 EEYLINLIDSPGHVDFSSEVSTAV--RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 39 ~~~~i~iiDTpG~~~~~~~~~~~l--~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 104 (161)
.++.+.+.++.+...-.......+ +.+|++|++ .... .. ..+..+...++|+|++.+..+
T Consensus 39 ~g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~-~~~~-~~----~~~~~l~~~~iPvV~i~~~~~ 100 (288)
T 3gv0_A 39 TQYHLVVTPHIHAKDSMVPIRYILETGSADGVIIS-KIEP-ND----PRVRFMTERNMPFVTHGRSDM 100 (288)
T ss_dssp SSCEEEECCBSSGGGTTHHHHHHHHHTCCSEEEEE-SCCT-TC----HHHHHHHHTTCCEEEESCCCS
T ss_pred cCCEEEEecCCcchhHHHHHHHHHHcCCccEEEEe-cCCC-Cc----HHHHHHhhCCCCEEEECCcCC
Confidence 357777777766443323333333 568988765 3221 11 234455667899988766543
No 307
>3abz_A Beta-glucosidase I; glycoside hydrolase family3 beta-glucosidase, PA14 domain, H; 2.15A {Kluyveromyces marxianus} PDB: 3ac0_A*
Probab=32.47 E-value=1.3e+02 Score=26.84 Aligned_cols=48 Identities=8% Similarity=0.155 Sum_probs=31.9
Q ss_pred HHHHHHHHHhcCEEEEEEeCCC-----C-------CChhHHHHHHHHHHcCCCcEEEEEC
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVE-----G-------ICAQTQVALKQAWLEKIQPILVLNK 102 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~-----~-------~~~~~~~~~~~~~~~~~p~ilv~NK 102 (161)
...+....+.+|++|+++..+. + +.....++++.+...+.|+|+|++=
T Consensus 564 ~~~Av~~A~~ADvvVv~vG~~~~~e~Eg~DR~~l~LP~~Q~~LI~aV~a~~~~tVVVl~s 623 (845)
T 3abz_A 564 IRNAAELAAKHDKAVLIIGLNGEWETEGYDRENMDLPKRTNELVRAVLKANPNTVIVNQS 623 (845)
T ss_dssp HHHHHHHHHTSSEEEEEEECCTTTSBTTBCCSSSCCCTTHHHHHHHHHHHCSCEEEEEEC
T ss_pred HHHHHHHHhcCCEEEEEEecCCccccccCCcccccCCHHHHHHHHHHHHhCCCEEEEEeC
Confidence 4456677788999999995441 1 1233455566666778898887763
No 308
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=30.42 E-value=1e+02 Score=22.55 Aligned_cols=58 Identities=12% Similarity=0.005 Sum_probs=30.6
Q ss_pred ceeEEEEeCCCchhhHHHHHHHH-HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAV-RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKI 103 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l-~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~ 103 (161)
++.+.+.++.+.+.......... +.+|++|++-... .. ..+..+...++|+|++....
T Consensus 40 g~~~~~~~~~~~~~~~~~~~~l~~~~vdGiIi~~~~~---~~---~~~~~l~~~~iPvV~~~~~~ 98 (294)
T 3qk7_A 40 GLDLLLIPDEPGEKYQSLIHLVETRRVDALIVAHTQP---ED---FRLQYLQKQNFPFLALGRSH 98 (294)
T ss_dssp TCEEEEEEECTTCCCHHHHHHHHHTCCSEEEECSCCS---SC---HHHHHHHHTTCCEEEESCCC
T ss_pred CCEEEEEeCCChhhHHHHHHHHHcCCCCEEEEeCCCC---Ch---HHHHHHHhCCCCEEEECCCC
Confidence 45666666655333333333333 3578877643211 11 33445566788988776643
No 309
>2zkr_f 60S ribosomal protein L7A; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=30.20 E-value=34 Score=26.33 Aligned_cols=52 Identities=10% Similarity=-0.055 Sum_probs=34.9
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
...+..+++...+-++|+..+-.+......+..++...++|++.+.+|.+|-
T Consensus 140 ~keV~KaIekgkAkLVIIA~DasP~ei~~~Lp~LC~~~~VPyi~v~sk~eLG 191 (266)
T 2zkr_f 140 VNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLG 191 (266)
T ss_dssp HHHHHHHHHTTCCSEEEEESCCSSSTTTTHHHHHHHHHTCCEEEESCHHHHH
T ss_pred hHHHHHHHHhCCceEEEEecCCCHHHHHHHHHHHHHhcCCCEEEECCHHHHH
Confidence 3467778887777677776554333333334466777899999999988873
No 310
>2x41_A Beta-glucosidase; hydrolase, TIM barrel fold, fibronectin type III fold; HET: BGC; 2.05A {Thermotoga neapolitana} PDB: 2x40_A* 2x42_A*
Probab=30.02 E-value=1.5e+02 Score=25.81 Aligned_cols=46 Identities=20% Similarity=0.299 Sum_probs=29.2
Q ss_pred HHHHHHHHhcCEEEEEEeCCCC-------------CChhHHHHHHHHH----HcCCCcEEEEE
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEG-------------ICAQTQVALKQAW----LEKIQPILVLN 101 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~-------------~~~~~~~~~~~~~----~~~~p~ilv~N 101 (161)
..+....+.+|++|+++....+ +......+++.+. ..+.|+|+|+|
T Consensus 436 ~~a~~~a~~aDvvIv~vg~~~gEg~Dr~~~~~~l~Lp~~q~~LI~~v~~~~~~~~~~vVVVl~ 498 (721)
T 2x41_A 436 KEIHKLAKKNDVAVIVISRISGEGYDRKPVKGDFYLSDDETDLIKTVSREFHEQGKKVIVLLN 498 (721)
T ss_dssp HHHHHHHHHCSEEEEEEECCCBTTCCCCSSBTTTBCCHHHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred HHHHHHHhcCCEEEEEEeccccccccccCCCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEe
Confidence 4566677899999999964311 1223344555555 66888887764
No 311
>2jnb_A NHP2-like protein 1; splicing, KINK-turn RNA-binding protein, NHPX, RNA binding protein; NMR {Homo sapiens} SCOP: d.79.3.1
Probab=29.57 E-value=15 Score=25.54 Aligned_cols=51 Identities=10% Similarity=-0.089 Sum_probs=33.7
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
.++..+++...+-++++..+-.+......+...+...++|.+.+.+|.+|-
T Consensus 56 kev~KaI~~gkakLVIIA~D~~p~e~~~~l~~lC~~~~VP~~~v~sk~eLG 106 (144)
T 2jnb_A 56 NEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALG 106 (144)
T ss_dssp HHHHHHHHHTCEEEEEEETTCSCHHHHTTSCSSCGGGCCCCEEESCSHHHH
T ss_pred HHHHHHHHhCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCEEEECCHHHHH
Confidence 457777777788888887654332122233345566799999998988874
No 312
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=29.25 E-value=1.5e+02 Score=22.52 Aligned_cols=63 Identities=24% Similarity=0.241 Sum_probs=33.9
Q ss_pred eEEEEeCCCchhhHH-------HHHHHHH-----hcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 42 LINLIDSPGHVDFSS-------EVSTAVR-----LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~-------~~~~~l~-----~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
...++||+|...... .....+. ..+-+++|+|++.+...... ........++ -+++++|+|-.
T Consensus 185 d~~lldt~gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDptsglD~~~~-~~~~~~~~g~-t~iiiThlD~~ 259 (302)
T 3b9q_A 185 DVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVGI-TGLILTKLDGS 259 (302)
T ss_dssp SEEEECCCCCSSCCHHHHHHHHHHHHHHHTTSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTCC-CEEEEECCSSC
T ss_pred cchHHhcCCCCcchhHHHHHHHHHHHHHHHhhccCCCeeEEEEeCCCCcCHHHH-HHHHHHhcCC-CEEEEeCCCCC
Confidence 467899999743211 1112221 24566899998765543322 2222222333 46778998854
No 313
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=28.92 E-value=2.1e+02 Score=22.38 Aligned_cols=59 Identities=10% Similarity=0.009 Sum_probs=34.8
Q ss_pred eEEEEeCCCc--hhhHHHHHHHHHhc-CEEEEEEeCCCCCC-------------hhHHHHHHHHHHcCCCcEEEE
Q psy2609 42 LINLIDSPGH--VDFSSEVSTAVRLC-DGTIIVVDCVEGIC-------------AQTQVALKQAWLEKIQPILVL 100 (161)
Q Consensus 42 ~i~iiDTpG~--~~~~~~~~~~l~~~-d~~ilVvd~~~~~~-------------~~~~~~~~~~~~~~~p~ilv~ 100 (161)
.+.+.|+|+. ..+........+.- ..-++|+|.-.-+. .....+..+++..++|+|++.
T Consensus 129 ~l~I~d~~~~si~~i~~~ir~l~~~~gg~~lIVIDyLqlm~~~~~~~~r~~ei~~isr~LK~lAkel~vpVi~ls 203 (338)
T 4a1f_A 129 KLFFYDKSYVRIEQIRLQLRKLKSQHKELGIAFIDYLQLMSGSKATKERHEQIAEISRELKTLARELEIPIIALV 203 (338)
T ss_dssp CEEEECCTTCCHHHHHHHHHHHHHHCTTEEEEEEEEEECCCTHHHHHHCCCCHHHHHHHHHHHHHHHTSCEEEEE
T ss_pred CeEEeCCCCCcHHHHHHHHHHHHHhcCCCCEEEEechHHhcCCCCCCChHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 5788899974 34444444444454 78899998432111 111223345556799998873
No 314
>2nx2_A Hypothetical protein YPSA; structural genomics, unknown function, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: c.129.1.2
Probab=26.34 E-value=1.3e+02 Score=21.29 Aligned_cols=45 Identities=11% Similarity=0.070 Sum_probs=25.0
Q ss_pred hHHHHHHHHHhcCEEEEEEeCCC-CCChhHHHHHHHH-HHcCCCcEE
Q psy2609 54 FSSEVSTAVRLCDGTIIVVDCVE-GICAQTQVALKQA-WLEKIQPIL 98 (161)
Q Consensus 54 ~~~~~~~~l~~~d~~ilVvd~~~-~~~~~~~~~~~~~-~~~~~p~il 98 (161)
|..--..-+..+|++|+++|... |-+..+....+.. .+.+.|+.+
T Consensus 120 ~~~rn~~mvd~sD~liavyDg~~~GgT~~~v~~A~~~~~~~~~pv~~ 166 (181)
T 2nx2_A 120 FKQKNQFFIDKSDGLLLLYDPEKEGSPKYMLGTAEKRREQDGYPIYF 166 (181)
T ss_dssp HHHHHHHHHHHSSEEEEECCTTTCCTTHHHHHHHHHHHHHHCCCEEE
T ss_pred HHHHHHHHHHHCCEEEEEEcCCCCCCHHHHHHHHHHhccccCCeEEE
Confidence 33344455778999999999753 3334333333221 223677644
No 315
>3zyz_A Beta-D-glucoside glucohydrolase; HET: NAG BGC; 2.10A {Hypocrea jecorina} PDB: 3zz1_A* 4i8d_A*
Probab=26.20 E-value=1.3e+02 Score=26.24 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=29.6
Q ss_pred HHHHHHHHHhcCEEEEEEeCCC--CC---------------ChhHHHHHHHHHHcCCCcEEEEE
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVE--GI---------------CAQTQVALKQAWLEKIQPILVLN 101 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~--~~---------------~~~~~~~~~~~~~~~~p~ilv~N 101 (161)
...+....+.+|++|+++.... +. .....++++.+...+.|+|+|++
T Consensus 418 ~~~a~~~A~~aDv~Iv~vg~~~gEg~~~~~g~~gDR~~l~Lp~~Q~~Li~~v~~~~~~~VVVl~ 481 (713)
T 3zyz_A 418 TSSGASAARGKDVAIVFITADSGEGYITVEGNAGDRNNLDPWHNGNALVQAVAGANSNVIVVVH 481 (713)
T ss_dssp HHHHHHHHTTCSEEEEEEEECCBCTTCCBTTBCSSCSCSSCSTTHHHHHHHHHHHCSCEEEEEE
T ss_pred HHHHHHHhhcCCEEEEEecccCCCCccccccCCCCcccccCChhHHHHHHHHHHhCCCeEEEEe
Confidence 3455666788999999984321 11 12234556666677888887765
No 316
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=25.46 E-value=2e+02 Score=22.71 Aligned_cols=63 Identities=22% Similarity=0.210 Sum_probs=33.7
Q ss_pred eEEEEeCCCchhhHH-------HHHHHH-----HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 42 LINLIDSPGHVDFSS-------EVSTAV-----RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~-------~~~~~l-----~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
...++||+|...... .....+ ...+-+++|+|++.+...... ........+ .-+++++|.|-.
T Consensus 242 d~~lldt~Gl~~~~~~~~~eLSkqr~~iaral~~~P~e~lLvLDpttglD~~~~-~~~~~~~~g-~t~iiiThlD~~ 316 (359)
T 2og2_A 242 DVVLCDTSGRLHTNYSLMEELIACKKAVGKIVSGAPNEILLVLDGNTGLNMLPQ-AREFNEVVG-ITGLILTKLDGS 316 (359)
T ss_dssp SEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSTTCCSEEEEEEEGGGGGGGHHH-HHHHHHHTC-CCEEEEESCTTC
T ss_pred HHHHHHhcCCChhhhhHHHHHHHHHHHHHHHHhcCCCceEEEEcCCCCCCHHHH-HHHHHHhcC-CeEEEEecCccc
Confidence 467899999643211 111121 124567999997765533322 212222223 346789998853
No 317
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=24.69 E-value=26 Score=27.21 Aligned_cols=35 Identities=14% Similarity=0.186 Sum_probs=23.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCC
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCV 75 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~ 75 (161)
.+-+.++|+||-.-.... ..++..||.+|+++.+.
T Consensus 163 ~~D~v~iD~~~~~~~~~~-~~al~aAd~viIvt~~e 197 (314)
T 3fwy_A 163 DTDVVIFDVLGDVVCGGF-AAPLQHADQAVVVTAND 197 (314)
T ss_dssp SCSEEEEEECCSSCCGGG-GGGGGTCSEEEEEECSS
T ss_pred cCceEeeccCCcchhhhh-HhHHhhCCeEEEEeCCc
Confidence 467889999875322211 24577899999999764
No 318
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=23.97 E-value=1.3e+02 Score=21.94 Aligned_cols=60 Identities=18% Similarity=0.135 Sum_probs=33.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAV--RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l--~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl 105 (161)
++.+.+.++.+...-.......+ +.+|++|++- ... . ...+..+...++|+|++.+..+.
T Consensus 42 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdGiI~~~-~~~--~---~~~~~~l~~~~iPvV~i~~~~~~ 103 (295)
T 3hcw_A 42 GYGTQTTVSNNMNDLMDEVYKMIKQRMVDAFILLY-SKE--N---DPIKQMLIDESMPFIVIGKPTSD 103 (295)
T ss_dssp TCEEEECCCCSHHHHHHHHHHHHHTTCCSEEEESC-CCT--T---CHHHHHHHHTTCCEEEESCCCSS
T ss_pred CCEEEEEcCCCChHHHHHHHHHHHhCCcCEEEEcC-ccc--C---hHHHHHHHhCCCCEEEECCCCcc
Confidence 56777777665433222222333 4588877752 211 1 12344556678999888766543
No 319
>3u5e_c L32, RP73, YL38, 60S ribosomal protein L30; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3izc_f 3izs_f 3o58_Z 3o5h_Z 1t0k_B 3u5i_c 4b6a_c 1ck2_A 1cn7_A 1nmu_B* 3jyw_2
Probab=22.96 E-value=31 Score=22.26 Aligned_cols=50 Identities=10% Similarity=0.012 Sum_probs=31.5
Q ss_pred HHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcE-EEEECCcch
Q psy2609 56 SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI-LVLNKIDRL 106 (161)
Q Consensus 56 ~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~i-lv~NK~Dl~ 106 (161)
.++..+++...+-++++..+- .......+..++...++|++ .+.+|.+|-
T Consensus 28 ~~v~kai~~gkaklVilA~D~-~~~~~~~i~~~c~~~~ip~~~~~~s~~eLG 78 (105)
T 3u5e_c 28 KSTVKSLRQGKSKLIIIAANT-PVLRKSELEYYAMLSKTKVYYFQGGNNELG 78 (105)
T ss_dssp HHHHHHHHTTCCSEEEECTTS-CHHHHHHHHHHHHHHTCEEEECSSCHHHHH
T ss_pred HHHHHHHHcCCceEEEEeCCC-CHHHHHHHHHHHHHcCCCEEEeCCCHHHHH
Confidence 467777877777666665543 22333444455566789998 577777763
No 320
>4a17_F RPL7A, 60S ribosomal protein L9; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_F 4a1c_F 4a1e_F
Probab=22.50 E-value=99 Score=23.56 Aligned_cols=52 Identities=8% Similarity=-0.027 Sum_probs=35.3
Q ss_pred HHHHHHHHHhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCcch
Q psy2609 55 SSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106 (161)
Q Consensus 55 ~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~Dl~ 106 (161)
...+...++.-.+-++|+..+-.+......+-..+...++|.+++-+|.+|-
T Consensus 129 vneVtKaIekgKAqLVVIA~DvdPielv~~LPaLCee~~VPY~~V~sK~~LG 180 (255)
T 4a17_F 129 LNHITTLIENKQAKLVVIAHDVDPIELVIFLPQLCRKNDVPFAFVKGKAALG 180 (255)
T ss_dssp HHHHHHHHHTSCCSEEEEESCCSSTHHHHHHHHHHHHTTCCEEEESCHHHHH
T ss_pred hHHHHHHHHcCCceEEEEeCCCChHHHHHHHHHHHHHcCCCEEEECCHHHHH
Confidence 4567777777666666666554333333344466778899999999998873
No 321
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=21.71 E-value=2.3e+02 Score=20.30 Aligned_cols=58 Identities=17% Similarity=0.274 Sum_probs=33.7
Q ss_pred ceeEEEEeCCCchhhHHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHHHHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAV--RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l--~~~d~~ilVvd~~~~~~~~~~~~~~~~~~~~~p~ilv~NK~D 104 (161)
++.+.+.++.+...-.......+ +.+|++|+.- .. . ...+..+...++|+|++.+..+
T Consensus 37 g~~~~~~~~~~~~~~~~~~~~~l~~~~vdgiIi~~-~~-~-----~~~~~~l~~~~iPvV~i~~~~~ 96 (276)
T 3jy6_A 37 GYIGVLFDANADIEREKTLLRAIGSRGFDGLILQS-FS-N-----PQTVQEILHQQMPVVSVDREMD 96 (276)
T ss_dssp TCEEEEEECTTCHHHHHHHHHHHHTTTCSEEEEES-SC-C-----HHHHHHHHTTSSCEEEESCCCT
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec-CC-c-----HHHHHHHHHCCCCEEEEecccC
Confidence 57788888877543222222222 4578866653 22 1 3344556667999988866554
No 322
>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}
Probab=21.54 E-value=86 Score=22.60 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=30.2
Q ss_pred ceeEEEEeCCCchhhHHHHHHHH--HhcCEEEEEEeCCCCCChhHHHHHH-HHHHcCCCcEEEEECCc
Q psy2609 40 EYLINLIDSPGHVDFSSEVSTAV--RLCDGTIIVVDCVEGICAQTQVALK-QAWLEKIQPILVLNKID 104 (161)
Q Consensus 40 ~~~i~iiDTpG~~~~~~~~~~~l--~~~d~~ilVvd~~~~~~~~~~~~~~-~~~~~~~p~ilv~NK~D 104 (161)
++.+.+.++.+...-.......+ +.+|++|+.- .. ...+. .+...++|+|++.+..+
T Consensus 38 g~~~~~~~~~~~~~~~~~~~~~l~~~~~dgiIi~~-----~~---~~~~~~~l~~~~iPvV~~~~~~~ 97 (277)
T 3e61_A 38 GYQVLIGNSDNDIKKAQGYLATFVSHNCTGMISTA-----FN---ENIIENTLTDHHIPFVFIDRINN 97 (277)
T ss_dssp TCCEEEEECTTCHHHHHHHHHHHHHTTCSEEEECG-----GG---HHHHHHHHHHC-CCEEEGGGCC-
T ss_pred CCEEEEEeCCCCHHHHHHHHHHHHhCCCCEEEEec-----CC---hHHHHHHHHcCCCCEEEEeccCC
Confidence 56777777776433222222222 4578877632 11 22345 56667899888766543
No 323
>2c92_A 6,7-dimethyl-8-ribityllumazine synthase; transferase, riboflavin biosynthesis, inhibitor binding; HET: TP6; 1.6A {Mycobacterium tuberculosis} PDB: 1w29_A* 1w19_A* 2c94_A* 2c97_A* 2c9b_A* 2c9d_A* 2vi5_A*
Probab=21.16 E-value=2.2e+02 Score=19.93 Aligned_cols=59 Identities=7% Similarity=0.018 Sum_probs=36.0
Q ss_pred eEEEEeCCCchhhHHHHHHHHHhcCEEEEEEeCCCCCChhHHHH--------HHHHHHcCCCcEEEE
Q psy2609 42 LINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA--------LKQAWLEKIQPILVL 100 (161)
Q Consensus 42 ~i~iiDTpG~~~~~~~~~~~l~~~d~~ilVvd~~~~~~~~~~~~--------~~~~~~~~~p~ilv~ 100 (161)
.+.++..||--+..-......+..|++|.+=-.-+|-+...+.+ .+.....++|++..+
T Consensus 50 ~i~v~~VPGafEiP~aak~la~~yDavIaLG~VIrG~T~Hfd~Va~~vs~Gl~~v~L~~~vPV~~GV 116 (160)
T 2c92_A 50 DPTVVRVLGAIEIPVVAQELARNHDAVVALGVVIRGQTPHFDYVCDAVTQGLTRVSLDSSTPIANGV 116 (160)
T ss_dssp CCEEEEESSGGGHHHHHHHHHTSCSEEEEEEEEECCSSTHHHHHHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred ceEEEECCcHHHHHHHHHHHHhcCCEEEEEeeeecCCchHHHHHHHHHHHHHHHHHhhcCCCEEEEE
Confidence 77888999987765555555556898776433333334333322 234445799997653
Done!