RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2609
(161 letters)
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation;
HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB:
1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A*
1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T*
2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Length = 842
Score = 196 bits (499), Expect = 2e-59
Identities = 65/135 (48%), Positives = 100/135 (74%), Gaps = 9/135 (6%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPE---------EYLINLIDSPGHVDFSSEV 58
+ D+RKDEQERGIT+KS++ISLY + + + + +LINLIDSPGHVDFSSEV
Sbjct: 56 FTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEV 115
Query: 59 STAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIY 118
+ A+R+ DG ++VVD +EG+C QT+ L+QA E+I+P++V+NK+DR +LE+++S D+Y
Sbjct: 116 TAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLY 175
Query: 119 VHLSQLLEQVNAVMG 133
++ +E VN ++
Sbjct: 176 QTFARTVESVNVIVS 190
>3cb4_D GTP-binding protein LEPA; GTPase, OB-fold, membrane,
nucleotide-binding, translation; 2.80A {Escherichia
coli} PDB: 3deg_C*
Length = 599
Score = 100 bits (252), Expect = 1e-25
Identities = 48/104 (46%), Positives = 67/104 (64%), Gaps = 8/104 (7%)
Query: 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVR 63
M + +DS E+ERGIT+K+ S++L YK D E Y +N ID+PGHVDFS EVS ++
Sbjct: 36 MEAQVLDSMDLERERGITIKAQSVTLDYK-ASDG-ETYQLNFIDTPGHVDFSYEVSRSLA 93
Query: 64 LCDGTIIVVDCVEGICAQTQVALKQAWLE---KIQPILVLNKID 104
C+G ++VVD +G+ AQT A +E ++ P VLNKID
Sbjct: 94 ACEGALLVVDAGQGVEAQTLANCYTA-MEMDLEVVP--VLNKID 134
>2ywe_A GTP-binding protein LEPA; G domain, beta-barrel, ferredoxin-like
domain, structural GE NPPSFA; 2.05A {Aquifex aeolicus}
PDB: 2ywf_A* 2ywg_A* 2ywh_A*
Length = 600
Score = 100 bits (252), Expect = 1e-25
Identities = 45/105 (42%), Positives = 66/105 (62%), Gaps = 10/105 (9%)
Query: 4 MVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVR 63
+D+ E+ERGIT+K ++ ++YK KD Y ++LID+PGHVDFS EVS A+
Sbjct: 38 KREQLLDTLDVERERGITVKMQAVRMFYK-AKDG-NTYKLHLIDTPGHVDFSYEVSRALA 95
Query: 64 LCDGTIIVVDCVEGICAQTQ----VALKQAWLEKIQPILVLNKID 104
C+G ++++D +GI AQT A++Q L I P V+NKID
Sbjct: 96 ACEGALLLIDASQGIEAQTVANFWKAVEQD-LV-IIP--VINKID 136
>2dy1_A Elongation factor G; translocation, GTP complex, structural
genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus}
SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1
PDB: 1wdt_A*
Length = 665
Score = 87.6 bits (218), Expect = 5e-21
Identities = 20/97 (20%), Positives = 45/97 (46%), Gaps = 7/97 (7%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
D + + T+++ L ++ ++ + L+D+PG+ DF E+ A+ D
Sbjct: 49 TDYTPEAKLHRTTVRTGVAPLLFRGHR-------VFLLDAPGYGDFVGEIRGALEAADAA 101
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
++ V G+ T+ A A + ++V+ K+D+
Sbjct: 102 LVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 138
>2rdo_7 EF-G, elongation factor G; elongation factor G, EF-G, RRF, GDPNP,
50S subunit, cryo-EM, REAL-space refinement,
ribonucleoprotein; 9.10A {Escherichia coli} PDB: 3j0e_H
Length = 704
Score = 78.3 bits (194), Expect = 8e-18
Identities = 38/98 (38%), Positives = 62/98 (63%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
MD + EQERGIT+ S++ + ++ E + IN+ID+PGHVDF+ EV ++R+ DG
Sbjct: 50 MDWMEQEQERGITITSAATTAFWSGMAKQYEPHRINIIDTPGHVDFTIEVERSMRVLDGA 109
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106
++V V G+ Q++ +QA K+ I +NK+DR+
Sbjct: 110 VMVYCAVGGVQPQSETVWRQANKYKVPRIAFVNKMDRM 147
>1dar_A EF-G, elongation factor G; ribosomal translocase, translational
GTPase; HET: GDP; 2.40A {Thermus thermophilus} SCOP:
b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 PDB: 1elo_A 1ktv_A
2om7_L* 2wri_Y* 2wrk_Y* 2xsy_Y* 2xuy_Y* 2j7k_A* 2efg_A*
1jqm_B 1efg_A* 1fnm_A* 1pn6_A 2bm1_A* 2bm0_A* 2bv3_A*
3izp_E 1zn0_B 1jqs_C 2bcw_C ...
Length = 691
Score = 73.7 bits (182), Expect = 4e-16
Identities = 37/98 (37%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
MD + E+ERGIT+ ++ + ++KD++ IN+ID+PGHVDF+ EV ++R+ DG
Sbjct: 52 MDFMEQERERGITITAAVTTCFWKDHR-------INIIDTPGHVDFTIEVERSMRVLDGA 104
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106
I+V D +G+ Q++ +QA K+ I NK+D+
Sbjct: 105 IVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKT 142
>2xex_A Elongation factor G; GTPase, translation, biosynthetic protein;
1.90A {Staphylococcus aureus}
Length = 693
Score = 73.3 bits (181), Expect = 5e-16
Identities = 35/98 (35%), Positives = 62/98 (63%), Gaps = 7/98 (7%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
MD + EQ+RGIT+ S++ + ++ ++ +N+ID+PGHVDF+ EV ++R+ DG
Sbjct: 50 MDWMEQEQDRGITITSAATTAAWEGHR-------VNIIDTPGHVDFTVEVERSLRVLDGA 102
Query: 69 IIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRL 106
+ V+D G+ QT+ +QA + I+ +NK+D+L
Sbjct: 103 VTVLDAQSGVEPQTETVWRQATTYGVPRIVFVNKMDKL 140
>3tr5_A RF-3, peptide chain release factor 3; protein synthesis,
translation; HET: GDP; 2.11A {Coxiella burnetii}
Length = 528
Score = 70.1 bits (172), Expect = 6e-15
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 29/133 (21%)
Query: 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE---VSTA 61
S +M+ E++RGI++ +S + YKD YLINL+D+PGH DF+ + TA
Sbjct: 56 TSDWMEL---EKQRGISVTTSVMQFPYKD-------YLINLLDTPGHADFTEDTYRTLTA 105
Query: 62 VRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKIDRLILEMKLSPLDIYVH 120
V D ++V+D +G+ +T ++ L PI+ +NK+DR ++
Sbjct: 106 V---DSALMVIDAAKGVEPRTIKLMEVCRLRHT-PIMTFINKMDRDTRP----SIE---- 153
Query: 121 LSQLLEQVNAVMG 133
LL+++ +++
Sbjct: 154 ---LLDEIESILR 163
>2h5e_A Peptide chain release factor RF-3; beta barrel, translation; HET:
GDP; 2.80A {Escherichia coli} PDB: 2o0f_A 3sfs_W*
3zvo_Y* 3uoq_W*
Length = 529
Score = 69.0 bits (169), Expect = 1e-14
Identities = 40/133 (30%), Positives = 69/133 (51%), Gaps = 29/133 (21%)
Query: 5 VSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSE---VSTA 61
S +M+ E++RGI++ +S + Y D L+NL+D+PGH DFS + TA
Sbjct: 56 KSDWMEM---EKQRGISITTSVMQFPYHD-------CLVNLLDTPGHEDFSEDTYRTLTA 105
Query: 62 VRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKIDRLILEMKLSPLDIYVH 120
V D ++V+D +G+ +T+ ++ L PIL +NK+DR I + P++
Sbjct: 106 V---DCCLMVIDAAKGVEDRTRKLMEVTRLRDT-PILTFMNKLDRDIRD----PME---- 153
Query: 121 LSQLLEQVNAVMG 133
LL++V +
Sbjct: 154 ---LLDEVENELK 163
>1wb1_A Translation elongation factor SELB; selenocysteine, protein
synthesis, selenium, ribosome; HET: GDP DXC; 3.0A
{Methanococcus maripaludis} SCOP: b.43.3.1 b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1wb2_A* 1wb3_A*
Length = 482
Score = 55.5 bits (134), Expect = 7e-10
Identities = 32/105 (30%), Positives = 46/105 (43%), Gaps = 9/105 (8%)
Query: 2 LCMVSSY--MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVS 59
L ++S D + Q+RGIT+ + Y I L+D+PGH D V
Sbjct: 39 LTEIASTSAHDKLPESQKRGITIDIGFSAF------KLEN-YRITLVDAPGHADLIRAVV 91
Query: 60 TAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
+A + D +IVVD EG QT + I I+V+ K D
Sbjct: 92 SAADIIDLALIVVDAKEGPKTQTGEHMLILDHFNIPIIVVITKSD 136
>1zun_B Sulfate adenylate transferase, subunit 1/adenylylsulfate kinase;
beta barrel, switch domain, heterodimer, pyrophosphate,
G protein; HET: GDP AGS; 2.70A {Pseudomonas syringae PV}
SCOP: b.43.3.1 b.44.1.1 c.37.1.8
Length = 434
Score = 51.1 bits (123), Expect = 2e-08
Identities = 28/104 (26%), Positives = 50/104 (48%), Gaps = 22/104 (21%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT 68
+D + E+E+GIT+ + Y+ T + I + D+PGH ++ ++T CD
Sbjct: 79 VDGLQAEREQGITIDVAYR--YFS----TAKRKFI-IADTPGHEQYTRNMATGASTCDLA 131
Query: 69 IIVVDCVEGICAQTQ-----VAL---KQAWLEKIQPILVLNKID 104
II+VD G+ QT+ +L K ++ +NK+D
Sbjct: 132 IILVDARYGVQTQTRRHSYIASLLGIKHI-------VVAINKMD 168
>1f60_A Elongation factor EEF1A; protein-protein complex, translation;
1.67A {Saccharomyces cerevisiae} SCOP: b.43.3.1 b.44.1.1
c.37.1.8 PDB: 1g7c_A* 1ije_A* 1ijf_A* 2b7b_A* 2b7c_A
Length = 458
Score = 48.5 bits (116), Expect = 2e-07
Identities = 22/70 (31%), Positives = 36/70 (51%), Gaps = 7/70 (10%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
+D K E+ERGIT+ I+L+ + +Y + +ID+PGH DF + T D
Sbjct: 59 VLDKLKAERERGITI---DIALWKFET----PKYQVTVIDAPGHRDFIKNMITGTSQADC 111
Query: 68 TIIVVDCVEG 77
I+++ G
Sbjct: 112 AILIIAGGVG 121
>1jny_A EF-1-alpha, elongation factor 1-alpha, EF-TU, TUF-1; GTPase,
alpha/beta structure, protein biosynthesis, translation;
HET: GDP; 1.80A {Sulfolobus solfataricus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1skq_A* 3agj_A*
Length = 435
Score = 46.9 bits (112), Expect = 6e-07
Identities = 29/106 (27%), Positives = 51/106 (48%), Gaps = 17/106 (16%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
+D K+E+ERG+T+ +++ + ++Y +ID+PGH DF + T D
Sbjct: 58 LLDRLKEERERGVTI---NLTFMRFET----KKYFFTIIDAPGHRDFVKNMITGASQADA 110
Query: 68 TIIVVDCVEG-----ICAQTQVALKQAWLEKI----QPILVLNKID 104
I+VV +G + + Q + L K Q I+ +NK+D
Sbjct: 111 AILVVSAKKGEYEAGMSVEGQ-TREHIILAKTMGLDQLIVAVNKMD 155
>1g7s_A Translation initiation factor IF2/EIF5B; translational GTPase; HET:
GDP; 2.00A {Methanothermobacterthermautotrophicus} SCOP:
b.43.3.1 b.43.3.1 c.20.1.1 c.37.1.8 PDB: 1g7r_A* 1g7t_A*
Length = 594
Score = 46.1 bits (110), Expect = 1e-06
Identities = 32/104 (30%), Positives = 44/104 (42%), Gaps = 20/104 (19%)
Query: 46 IDSPGHVDFSSEVSTAVR-----LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV- 99
ID+PGH F T +R L D I++VD EG QTQ AL + + P +V
Sbjct: 75 IDTPGHEAF-----TTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRT-PFVVA 128
Query: 100 LNKIDRLILEMKLSPLDIYVHLSQLLEQVNA--------VMGEL 135
NKIDR+ S+ QV ++G+L
Sbjct: 129 ANKIDRIHGWRVHEGRPFMETFSKQDIQVQQKLDTKVYELVGKL 172
>1r5b_A Eukaryotic peptide chain release factor GTP-bindi subunit;
translation termination, peptide release, GTPase,
translatio; 2.35A {Schizosaccharomyces pombe} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1r5n_A* 1r5o_A* 3e20_A
Length = 467
Score = 45.8 bits (109), Expect = 1e-06
Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 7/70 (10%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
+DS +E+E+G T+ + Y + E +L+D+PGH + + + D
Sbjct: 95 ALDSTSEEREKGKTV---EVGRAYFET----EHRRFSLLDAPGHKGYVTNMINGASQADI 147
Query: 68 TIIVVDCVEG 77
++V+ G
Sbjct: 148 GVLVISARRG 157
>1s0u_A EIF-2-gamma, translation initiation factor 2 gamma subunit; GTPase,
EF-1A, tRNA; 2.40A {Methanocaldococcus jannaschii} SCOP:
b.43.3.1 b.44.1.1 c.37.1.8
Length = 408
Score = 43.4 bits (103), Expect = 9e-06
Identities = 33/148 (22%), Positives = 50/148 (33%), Gaps = 39/148 (26%)
Query: 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLIN-----------------LIDSPGHV 52
D +E RGI+++ Y +DSPGH
Sbjct: 34 DRHSEELRRGISIRLGYAD-CEIRKCPQCGTYTTKPRCPNCLAETEFLRRVSFVDSPGHE 92
Query: 53 DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ-----VALKQAWLEKIQPILVLNKIDRLI 107
+ + + L DG I+V+ E C Q Q +AL+ ++KI I+V NKID
Sbjct: 93 TLMATMLSGASLMDGAILVIAANEP-CPQPQTKEHLMALEILGIDKI--IIVQNKIDL-- 147
Query: 108 LEMKLSPLDIYVHLSQLLEQVNAVMGEL 135
V Q E + +
Sbjct: 148 -----------VDEKQAEENYEQIKEFV 164
>3p26_A Elongation factor 1 alpha-like protein; GTP/GDP binding domain,
beta-barrel, translational GTPase, D structural
genomics; 2.50A {Saccharomyces cerevisiae} PDB: 3p27_A*
Length = 483
Score = 41.8 bits (99), Expect = 3e-05
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF 54
MD +E+ERG+T+ SI + T ++D+PGH DF
Sbjct: 86 MDQTNEERERGVTV---SICTSH---FSTH-RANFTIVDAPGHRDF 124
>3mca_A HBS1, elongation factor 1 alpha-like protein; protein protein
complex, translation regulation; 2.74A
{Schizosaccharomyces pombe}
Length = 592
Score = 41.6 bits (98), Expect = 4e-05
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 7/46 (15%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF 54
+D+ ++E+ RG+TM ++ ++ + + + D+PGH DF
Sbjct: 230 LDTTEEERARGVTM---DVASTT---FESD-KKIYEIGDAPGHRDF 268
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay,
ribosomal protein,hydrolase; 9.50A {Saccharomyces
cerevisiae}
Length = 611
Score = 41.6 bits (98), Expect = 4e-05
Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 7/46 (15%)
Query: 9 MDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDF 54
MD +E+ERG+T+ SI + T ++D+PGH DF
Sbjct: 220 MDQTNEERERGVTV---SICTSH---FSTH-RANFTIVDAPGHRDF 258
>1kk1_A EIF2gamma; initiation of translation; HET: GNP; 1.80A {Pyrococcus
abyssi} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB: 1kjz_A*
1kk2_A* 1kk3_A* 1kk0_A* 2d74_A 2dcu_A*
Length = 410
Score = 40.3 bits (95), Expect = 9e-05
Identities = 28/116 (24%), Positives = 44/116 (37%), Gaps = 24/116 (20%)
Query: 10 DSRKDEQERGITMKSS----------SISLYYKDNKDTPEEYLINL------IDSPGHVD 53
D+ +E RGIT+K + Y + ID+PGH
Sbjct: 36 DTHSEELRRGITIKIGFADAEIRRCPNCGRYSTSPVCPYCGHETEFVRRVSFIDAPGHEA 95
Query: 54 FSSEVSTAVRLCDGTIIVVDCVEGICAQTQ-----VALKQAWLEKIQPILVLNKID 104
+ + L DG I+V+ E C + Q +AL+ + I I+ NKI+
Sbjct: 96 LMTTMLAGASLMDGAILVIAANEP-CPRPQTREHLMALQIIGQKNI--IIAQNKIE 148
>2elf_A Protein translation elongation factor 1A; tRNA, pyrrolysine,
structural genomics, NPPSFA; HET: CIT; 1.70A
{Methanosarcina mazei}
Length = 370
Score = 39.5 bits (93), Expect = 2e-04
Identities = 14/98 (14%), Positives = 35/98 (35%), Gaps = 19/98 (19%)
Query: 13 KDEQERGITMKSSSISL---YYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTI 69
+ ++G + + E + +D+ + + TA+ + D +
Sbjct: 39 ANLGKKGTS-----SDITMYNND-----KEGRNMVFVDAHSYPKTLKSLITALNISDIAV 88
Query: 70 IVVDCVEGICAQTQ---VALKQAWLEKIQPILVLNKID 104
+ + +G+ A T +AL + I+ L + D
Sbjct: 89 LCIP-PQGLDAHTGECIIALDLLGFKHG--IIALTRSD 123
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus
stearothermophilus} PDB: 2lkd_A*
Length = 178
Score = 36.9 bits (86), Expect = 9e-04
Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
Query: 43 INLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LN 101
I +D+PGH F++ + ++ D I+VV +G+ QT A+ A + PI+V +N
Sbjct: 57 ITFLDTPGHEAFTTMRARGAQVTDIVILVVAADDGVMPQTVEAINHAKAANV-PIIVAIN 115
Query: 102 KIDR 105
K+D+
Sbjct: 116 KMDK 119
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 37.3 bits (86), Expect = 0.001
Identities = 33/188 (17%), Positives = 59/188 (31%), Gaps = 78/188 (41%)
Query: 16 QERGITMKSSSISLYYK--------DNKD--TPEEYLINLID----SPGH--VDFSSEVS 59
QE+G+ M LY + D + Y +++D +P + + F E
Sbjct: 1627 QEQGMGM-----DLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKG 1681
Query: 60 TAVR----------LCDGTIIV------VDCV---------EGICAQT---QVALKQAWL 91
+R + DG + ++ +G+ + T Q A
Sbjct: 1682 KRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPA------ 1735
Query: 92 EKIQPILVLNK-IDRLILEMKLSPLDIYV--HLSQLLEQVNAVMGE---LFA-SQVMD-E 143
+ ++ K + L P D H S L GE L + + VM E
Sbjct: 1736 -----LTLMEKAAFEDLKSKGLIPADATFAGH-S-L--------GEYAALASLADVMSIE 1780
Query: 144 TAVKTTAQ 151
+ V+
Sbjct: 1781 SLVEVVFY 1788
Score = 36.2 bits (83), Expect = 0.003
Identities = 27/125 (21%), Positives = 45/125 (36%), Gaps = 37/125 (29%)
Query: 17 ERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVE 76
RG+TM+ + ++ Y + I+ PG V A + V VE
Sbjct: 1788 YRGMTMQVAV-----PRDELGRSNYGMIAIN-PGRV--------AASFSQEALQYV--VE 1831
Query: 77 GICAQT--------------QVAL---KQAWLEKIQPIL---VLNKIDRLILEMKLSPLD 116
+ +T Q +A L+ + +L L KID + L+ LS +
Sbjct: 1832 RVGKRTGWLVEIVNYNVENQQYVAAGDLRA-LDTVTNVLNFIKLQKIDIIELQKSLSLEE 1890
Query: 117 IYVHL 121
+ HL
Sbjct: 1891 VEGHL 1895
Score = 35.0 bits (80), Expect = 0.008
Identities = 14/59 (23%), Positives = 19/59 (32%), Gaps = 15/59 (25%)
Query: 108 LEMKLS-PLDIYVHLSQLLEQVNAVMGELFASQVMDETAVKTTAQDNETKQ----TSRF 161
LE L P + SQL EQ F + + A D+E +F
Sbjct: 16 LEHVLLVPTASFFIASQLQEQ--------FNKIL--PEPTEGFAADDEPTTPAELVGKF 64
>2c78_A Elongation factor TU-A; hydrolase, GTPase, translation elongation
factor, protein synthesis, antibiotic, GTP-binding,
nucleotide-binding; HET: GNP PUL; 1.4A {Thermus
thermophilus} SCOP: b.43.3.1 b.44.1.1 c.37.1.8 PDB:
2y0u_Z* 2y0w_Z* 2y0y_Z* 2y10_Z* 2y12_Z* 2y14_Z* 2y16_Z*
2y18_Z* 2wrn_Z* 2wrq_Z* 2c77_A* 1aip_A 1exm_A* 1ha3_A*
2xqd_Z* 3fic_Z* 4abr_Z* 1b23_P* 1ob5_A* 1ttt_A* ...
Length = 405
Score = 35.6 bits (83), Expect = 0.005
Identities = 29/104 (27%), Positives = 46/104 (44%), Gaps = 24/104 (23%)
Query: 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTI 69
D +E+ RGIT+ ++ + Y + Y + +D PGH D+ + T DG I
Sbjct: 51 DKAPEERARGITINTAHVE-YETAKR----HY--SHVDCPGHADYIKNMITGAAQMDGAI 103
Query: 70 IVVDCVEGICAQT--------QVALKQAWLEKIQPILV-LNKID 104
+VV +G QT QV + I+V +NK+D
Sbjct: 104 LVVSAADGPMPQTREHILLARQVG--------VPYIVVFMNKVD 139
>3avx_A Elongation factor TS, elongation factor TU, linke replicase; RNA
polymerase, translation, transferase-RNA complex; HET:
GH3; 2.41A {Escherichia coli O157} PDB: 3agq_A 3agp_A*
3avu_A 3avv_A 3avt_A* 3avw_A* 3avy_A* 3mmp_A* 3mmp_G*
1efu_B
Length = 1289
Score = 35.7 bits (82), Expect = 0.005
Identities = 31/104 (29%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTI 69
D+ +E+ RGIT+ +S + Y + Y +D PGH D+ + T DG I
Sbjct: 335 DNAPEEKARGITINTSHVE-YDTPTR----HY--AHVDCPGHADYVKNMITGAAQMDGAI 387
Query: 70 IVVDCVEGICAQT--------QVALKQAWLEKIQPILV-LNKID 104
+VV +G QT QV + I+V LNK D
Sbjct: 388 LVVAATDGPMPQTREHILLGRQVG--------VPYIIVFLNKCD 423
>1d2e_A Elongation factor TU (EF-TU); G-protein, beta-barrel, RNA binding
protein; HET: GDP; 1.94A {Bos taurus} SCOP: b.43.3.1
b.44.1.1 c.37.1.8 PDB: 1xb2_A* 2hcj_A* 2hdn_A*
Length = 397
Score = 34.5 bits (80), Expect = 0.011
Identities = 27/104 (25%), Positives = 45/104 (43%), Gaps = 24/104 (23%)
Query: 10 DSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTI 69
D+ +E+ RGIT+ ++ + Y + Y D PGH D+ + T DG I
Sbjct: 42 DNAPEERARGITINAAHVE-YSTAAR----HY--AHTDCPGHADYVKNMITGTAPLDGCI 94
Query: 70 IVVDCVEGICAQT--------QVALKQAWLEKIQPILV-LNKID 104
+VV +G QT Q+ ++ ++V +NK D
Sbjct: 95 LVVAANDGPMPQTREHLLLARQIG--------VEHVVVYVNKAD 130
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 31.6 bits (71), Expect = 0.082
Identities = 13/112 (11%), Positives = 30/112 (26%), Gaps = 4/112 (3%)
Query: 38 PEEYLINLIDSPGHVDFSSEVS---TAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKI 94
P + D PG + ++ + ++ K + K
Sbjct: 117 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 176
Query: 95 QPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFASQVMDETAV 146
+ V K+D I + ++L+ + F + E +
Sbjct: 177 EFYFVRTKVDSDITNEADGEPQTFDK-EKVLQDIRLNCVNTFRENGIAEPPI 227
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 31.4 bits (70), Expect = 0.13
Identities = 25/170 (14%), Positives = 52/170 (30%), Gaps = 61/170 (35%)
Query: 14 DEQERGITMKSSSISLYYK----DNKDTPEE------YLINLI-----DSPGHVDF---- 54
D +T SL K +D P E +++I D D
Sbjct: 292 DHHSMTLT-PDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV 350
Query: 55 -SSEVSTAVRLC--------------DGTIIVVDCVEGICAQTQVALKQAWLEKIQ--PI 97
+++T + ++ I L W + I+ +
Sbjct: 351 NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPS-AH-IPTIL---LSLIWFDVIKSDVM 405
Query: 98 LVLNK------IDR-----------LILEMKLSPLDIY-VHLSQLLEQVN 129
+V+NK +++ + LE+K+ + Y +H +++ N
Sbjct: 406 VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALH-RSIVDHYN 454
Score = 28.7 bits (63), Expect = 0.96
Identities = 10/61 (16%), Positives = 21/61 (34%), Gaps = 21/61 (34%)
Query: 30 YYK----DNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85
+YK DN E + ++ DF ++ + T ++ ++A
Sbjct: 529 FYKPYICDNDPKYERLVNAIL------DFLPKIEENLICSKYTDLL-----------RIA 571
Query: 86 L 86
L
Sbjct: 572 L 572
Score = 26.7 bits (58), Expect = 4.1
Identities = 27/158 (17%), Positives = 48/158 (30%), Gaps = 40/158 (25%)
Query: 25 SSISLYYKDNKDTPEEY------LINLID--SPGHV---DFSSEVSTAV-RLCDGTIIVV 72
S I + Y L N + +V ++ A+ L +++
Sbjct: 96 SPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI 155
Query: 73 DCVEGICAQTQVALKQA--------------WL-----EKIQPIL-VLNKIDRLILEMKL 112
D V G +T VAL WL + +L +L K+ I
Sbjct: 156 DGVLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWT 214
Query: 113 SPLDIYVHLSQLLEQVNAVMGELFASQ-------VMDE 143
S D ++ + + A + L S+ V+
Sbjct: 215 SRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
>1zo1_I IF2, translation initiation factor 2; E. coli, ribosome, initiation
of protein synthesis, cryo-eletron microscopy,
translation/RNA complex; 13.80A {Escherichia coli}
Length = 501
Score = 30.6 bits (70), Expect = 0.20
Identities = 22/69 (31%), Positives = 38/69 (55%), Gaps = 12/69 (17%)
Query: 43 INLIDSPGHVDFSSEVSTAVR-----LCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPI 97
I +D+PGH F T++R D ++VV +G+ QT A++ A ++ P+
Sbjct: 53 ITFLDTPGHAAF-----TSMRARGAQATDIVVLVVAADDGVMPQTIEAIQHAKAAQV-PV 106
Query: 98 LV-LNKIDR 105
+V +NKID+
Sbjct: 107 VVAVNKIDK 115
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding,
hydrolase, nucleotide-binding; HET: GDP; 2.25A
{Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Length = 358
Score = 29.5 bits (67), Expect = 0.42
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 89 AWLEKIQPILVLNKIDRL 106
+++P++VLNKID L
Sbjct: 156 CETLQVEPLIVLNKIDLL 173
>3izy_P Translation initiation factor IF-2, mitochondrial; E coli, RNA,
ribosomal; 10.80A {Bos taurus}
Length = 537
Score = 29.5 bits (67), Expect = 0.48
Identities = 21/75 (28%), Positives = 36/75 (48%), Gaps = 10/75 (13%)
Query: 36 DTPEEYLINLIDSPGHVDFSSEVSTAVR-----LCDGTIIVVDCVEGICAQTQVALKQAW 90
P I +D+PGH F +A+R + D I+VV +G+ QT +++ A
Sbjct: 47 SLPSGEKITFLDTPGHAAF-----SAMRARGTQVTDIVILVVAADDGVMKQTVESIQHAK 101
Query: 91 LEKIQPILVLNKIDR 105
+ +L +NK D+
Sbjct: 102 DAHVPIVLAINKCDK 116
>2qpt_A EH domain-containing protein-2; protein-nucleotide complex,
membrane protein, endocytosis; HET: ANP; 3.10A {Mus
musculus}
Length = 550
Score = 29.4 bits (65), Expect = 0.50
Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 18/79 (22%)
Query: 43 INLIDSPGHV-----------DFSSEVSTAVRLCDGTIIVVDCVEG--ICAQTQVALK-- 87
I++ID+PG + DF + + D II++ I + A+
Sbjct: 156 ISIIDTPGILSGAKQRVSRGYDFPAVLRWFAERVD-LIILLFDAHKLEISDEFSEAIGAL 214
Query: 88 QAWLEKIQPILVLNKIDRL 106
+ +KI +VLNK D +
Sbjct: 215 RGHEDKI--RVVLNKADMV 231
>3qq5_A Small GTP-binding protein; hydrogenase, H-cluster, HYDA maturation,
GTP-binding domain, maturation enzyme, oxidoreductase;
2.99A {Thermotoga neapolitana}
Length = 423
Score = 29.2 bits (66), Expect = 0.63
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 21/83 (25%)
Query: 37 TPEEYLINLIDSPGHVDFSSE--------VSTAVRLCDGTIIVVDCVEGICAQTQVALKQ 88
+ L+D+PG +D E D I+V D +
Sbjct: 79 LHPIGPVTLVDTPG-LDDVGELGRLRVEKARRVFYRADCGILVTDSAPTP-------YED 130
Query: 89 AWLEKIQP-----ILVLNKIDRL 106
+ + ++V+NKID L
Sbjct: 131 DVVNLFKEMEIPFVVVVNKIDVL 153
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA,
30S ribosome ASSE GTP-binding, nucleotide-binding; HET:
GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Length = 308
Score = 29.0 bits (66), Expect = 0.66
Identities = 20/93 (21%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 37 TPEEYLINLIDSPG-H------------VDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83
P E I +D+PG + V+ ++ D + ++D EG + +
Sbjct: 55 IPNEAQIIFLDTPGIYEPKKSDVLGHSMVEI---AKQSLEEADVILFMIDATEGWRPRDE 111
Query: 84 VALKQAWLEKIQP-ILVLNKIDRLILEMKLSPL 115
+ +P I+V+NKID++ + PL
Sbjct: 112 EIYQNFIKPLNKPVIVVINKIDKIGPAKNVLPL 144
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.4 bits (62), Expect = 0.86
Identities = 9/34 (26%), Positives = 15/34 (44%), Gaps = 11/34 (32%)
Query: 14 DEQERGITMK--SSSISLYYKDNKDTPEEYL-IN 44
++Q +K +S+ LY D+ P L I
Sbjct: 18 EKQA----LKKLQASLKLYADDS--APA--LAIK 43
>3ohm_A Guanine nucleotide-binding protein G(Q) subunit A; PH domain, EF
hand, TIM barrel, C2 domain, GTPase, lipase, C binding,
GTP binding; HET: GDP; 2.70A {Mus musculus} PDB: 2bcj_Q*
2rgn_A* 3ah8_A*
Length = 327
Score = 28.5 bits (63), Expect = 0.86
Identities = 11/29 (37%), Positives = 14/29 (48%)
Query: 90 WLEKIQPILVLNKIDRLILEMKLSPLDIY 118
W + IL LNK D L ++ S L Y
Sbjct: 231 WFQNSSVILFLNKKDLLEEKIMYSHLVDY 259
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer,
signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP:
a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A*
1zca_A*
Length = 362
Score = 28.5 bits (63), Expect = 1.1
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 90 WLEKIQPILVLNKIDRLILEMKLSPLDIY 118
+ IL LNK D L ++++ + Y
Sbjct: 265 VFSNVSIILFLNKTDLLEEKVQVVSIKDY 293
>2xtz_A Guanine nucleotide-binding protein alpha-1 subuni; hydrolase,
G-protein signaling, SELF-activation, RAS-like DO; HET:
GSP; 2.34A {Arabidopsis thaliana}
Length = 354
Score = 28.5 bits (63), Expect = 1.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Query: 90 WLEKIQPILVLNKIDRLILEMKLSPLDI 117
EK +L LNK D ++ PL++
Sbjct: 247 CFEKTSFMLFLNKFDIFEKKVLDVPLNV 274
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like,
hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8
d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Length = 301
Score = 28.2 bits (64), Expect = 1.2
Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 20/93 (21%)
Query: 37 TPEEYLINLIDSPG-HVDFSSE--------VSTAVRLCDGTIIVVDCVEGICAQTQVALK 87
T Y +D+PG H++ S+++ + I VV+ V
Sbjct: 52 TEGAYQAIYVDTPGLHMEEKRAINRLMNKAASSSIGDVELVIFVVEGTRWTPDDEMV--- 108
Query: 88 QAWLEKIQP-----ILVLNKIDRLILEMKLSPL 115
L K++ IL +NK+D + + L P
Sbjct: 109 ---LNKLREGKAPVILAVNKVDNVQEKADLLPH 138
>1cip_A Protein (guanine nucleotide-binding protein alpha-1 subunit);
GTPase, hydrolase; HET: GNP; 1.50A {Rattus norvegicus}
SCOP: a.66.1.1 c.37.1.8 PDB: 1agr_A* 1bof_A* 1gdd_A*
1gfi_A* 1gia_A* 1gp2_A* 3ffa_A* 3ffb_A* 1gg2_A* 1git_A*
1svs_A* 1svk_A* 2zjz_A* 2zjy_A* 3ums_A* 2pz2_A* 2pz3_A*
1as0_A* 1as2_A* 1as3_A* ...
Length = 353
Score = 28.1 bits (62), Expect = 1.3
Identities = 12/29 (41%), Positives = 14/29 (48%)
Query: 90 WLEKIQPILVLNKIDRLILEMKLSPLDIY 118
W IL LNK D ++K SPL I
Sbjct: 257 WFTDTSIILFLNKKDLFEEKIKKSPLTIC 285
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural
genomics, BSGC structure funded by NIH, protein
structure initiative, PSI; HET: GDP; 2.80A {Thermotoga
maritima} SCOP: b.40.4.5 c.37.1.8
Length = 301
Score = 27.9 bits (63), Expect = 1.3
Identities = 6/21 (28%), Positives = 13/21 (61%)
Query: 86 LKQAWLEKIQPILVLNKIDRL 106
L A +++ ++V+NK+D
Sbjct: 108 LVLAEKNELETVMVINKMDLY 128
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with
oligonucleotide binding fold, central GTP binding
domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5
c.37.1.8
Length = 307
Score = 27.9 bits (63), Expect = 1.4
Identities = 6/16 (37%), Positives = 9/16 (56%)
Query: 89 AWLEKIQPILVLNKID 104
IQPI+ + K+D
Sbjct: 113 VEANDIQPIICITKMD 128
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Length = 302
Score = 27.9 bits (63), Expect = 1.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 86 LKQAWLEKIQPILVLNKIDRL 106
L K++P++V NKID L
Sbjct: 103 LVVYEYFKVEPVIVFNKIDLL 123
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural
genomics; HET: GDP; 1.96A {Thermus thermophilus}
Length = 161
Score = 26.7 bits (60), Expect = 2.5
Identities = 13/50 (26%), Positives = 21/50 (42%), Gaps = 6/50 (12%)
Query: 58 VSTAVRLCDGTIIVVDCVEGICAQ-TQVALKQAWLEKIQ-P-ILVLNKID 104
V A+ + + VD + +VA +L + P ILV K+D
Sbjct: 73 VDRALEDAEVVLFAVDGRAELTQADYEVA---EYLRRKGKPVILVATKVD 119
>3h2y_A GTPase family protein; GTP-binding protein YQEH, possibly involved
in replication initiation, csgid, IDP90222; HET: DGI;
1.80A {Bacillus anthracis str}
Length = 368
Score = 27.2 bits (60), Expect = 2.7
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 2/52 (3%)
Query: 53 DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
DF ++ + + +VD + + + ++ + +LV NK D
Sbjct: 58 DFLRILNGIGKSDALVVKIVDIFDFNGSWLPGLHR--FVGNNKVLLVGNKAD 107
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 1.97A {Thermotoga
maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 26.5 bits (59), Expect = 4.2
Identities = 7/41 (17%), Positives = 12/41 (29%), Gaps = 6/41 (14%)
Query: 59 STAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILV 99
ST + I+ D EG L + + +
Sbjct: 12 STWIYY-SPERILFDAGEG----VSTTLGSKVY-AFKYVFL 46
>3aj4_A Pleckstrin homology domain-containing family B ME; antiparallel
beta sheet, protein transport; HET: SEP EDO; 1.00A {Homo
sapiens} PDB: 3via_A 2dhi_A
Length = 112
Score = 25.6 bits (56), Expect = 4.5
Identities = 14/75 (18%), Positives = 29/75 (38%), Gaps = 10/75 (13%)
Query: 29 LYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGT----IIVVDCVEG----ICA 80
+YY D E +++ ++ E + DG ++ + C +G +CA
Sbjct: 35 IYYDDQTRQNIEDKVHMPMDCINIRTGQEC-RDTQPPDGKSKDCMLQIVCRDGKTISLCA 93
Query: 81 QTQVALKQAWLEKIQ 95
++ AW +Q
Sbjct: 94 ESTDD-CLAWKFTLQ 107
>3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling
protein; HET: GDP; 2.36A {Geobacillus
stearothermophilus}
Length = 369
Score = 26.4 bits (58), Expect = 5.3
Identities = 10/52 (19%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 53 DFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
DF S + + +VD + + + + +LV NK D
Sbjct: 60 DFLSMLHRIGESKALVVNIVDIFDFNGSFIPGLPR--FAADNPILLVGNKAD 109
>2gqw_A Ferredoxin reductase; flavoprotein, oxidoreductase; HET: FAD; 1.40A
{Pseudomonas SP} PDB: 1f3p_A* 1d7y_A* 2gr0_A* 2gr1_A*
2gr2_A* 2yvf_A* 2yvg_A* 2yvj_A* 2gr3_A*
Length = 408
Score = 26.4 bits (59), Expect = 5.6
Identities = 9/18 (50%), Positives = 9/18 (50%)
Query: 58 VSTAVRLCDGTIIVVDCV 75
V V L DGT I D V
Sbjct: 214 VDGVVLLDDGTRIAADMV 231
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 26.1 bits (56), Expect = 6.0
Identities = 15/100 (15%), Positives = 35/100 (35%), Gaps = 7/100 (7%)
Query: 14 DEQERGITMKSSSISLYYKDNKDTPEEYL---INLIDSPGHVDFSSEVSTAVRL---CDG 67
E ++ K + + P L I ++DSPG D + ++ C
Sbjct: 144 AEAKKLEQEKKQAFPDVDYAVVEYPLTLLQKGIEIVDSPGLNDTEARNELSLGYVNNCHA 203
Query: 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPIL-VLNKIDRL 106
+ V+ + + L+ + + ++N D++
Sbjct: 204 ILFVMRASQPCTLGERRYLENYIKGRGLTVFFLVNAWDQV 243
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET:
GDP; 2.50A {Bacillus subtilis}
Length = 436
Score = 26.3 bits (59), Expect = 6.1
Identities = 15/50 (30%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 58 VSTAVRLCDGTIIVVDCVEGICAQ-TQVALKQAWLEKIQ-P-ILVLNKID 104
A+ D I +V+ EG+ A +VA L + + P +L +NK+D
Sbjct: 76 AEIAMDEADVIIFMVNGREGVTAADEEVA---KILYRTKKPVVLAVNKLD 122
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote
initiative, RSGI, structural genomics, hydrolase; HET:
GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8
d.52.3.1
Length = 301
Score = 25.9 bits (58), Expect = 6.3
Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 20/85 (23%)
Query: 37 TPEEYLINLIDSPG-H----------VDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVA 85
T I +D+PG H V A+ + + VVD + ++
Sbjct: 51 TEGRRQIVFVDTPGLHKPMDALGEFMDQE---VYEALADVNAVVWVVDLRHPPTPEDELV 107
Query: 86 LKQAWLEKIQP----ILVLNKIDRL 106
+ L+ + +LV NK+D
Sbjct: 108 ARA--LKPLVGKVPILLVGNKLDAA 130
>1azs_C GS-alpha; complex (lyase/hydrolase), hydrolase, signal transducing
protein, cyclase, effector enzyme; HET: GSP FKP; 2.30A
{Bos taurus} SCOP: a.66.1.1 c.37.1.8 PDB: 1azt_A*
3c14_C* 3c15_C* 3c16_C* 1cjt_C* 1cjk_C* 1cju_C* 1cjv_C*
1tl7_C* 1cs4_C* 1u0h_C* 2gvd_C* 2gvz_C* 3e8a_C* 3g82_C*
3maa_C* 1cul_C* 3sn6_A*
Length = 402
Score = 25.9 bits (56), Expect = 6.7
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 2/31 (6%)
Query: 90 WLEKIQPILVLNKIDRLI--LEMKLSPLDIY 118
WL I IL LNK D L + S ++ Y
Sbjct: 281 WLRTISVILFLNKQDLLAEKVLAGKSKIEDY 311
>3fg2_P Putative rubredoxin reductase; ferredoxin reductase, RPA3782, F
flavoprotein, oxidoreductase; HET: FAD; 2.20A
{Rhodopseudomonas palustris}
Length = 404
Score = 26.0 bits (58), Expect = 7.1
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 60 TAVRLCDGTIIVVDCV 75
T V L DG + D V
Sbjct: 218 TGVVLSDGNTLPCDLV 233
>1q1r_A Putidaredoxin reductase; glutathione reductase fold,
oxidoreductase; HET: FAD; 1.91A {Pseudomonas putida}
SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB: 1q1w_A* 3lb8_A*
Length = 431
Score = 26.0 bits (58), Expect = 7.1
Identities = 8/16 (50%), Positives = 9/16 (56%)
Query: 60 TAVRLCDGTIIVVDCV 75
TAV DGT + D V
Sbjct: 227 TAVLCEDGTRLPADLV 242
>2v3a_A Rubredoxin reductase; alkane degradation, NADH oxidoreductase,
rubredoxin reductas NAD, flavoprotein, oxidoreductase;
HET: FAD; 2.4A {Pseudomonas aeruginosa} PDB: 2v3b_A*
Length = 384
Score = 25.6 bits (57), Expect = 8.4
Identities = 11/36 (30%), Positives = 16/36 (44%), Gaps = 4/36 (11%)
Query: 60 TAVRLCDGTIIVVDCV---EGICAQTQVALKQAWLE 92
L DG +I D V G+ +T++A A L
Sbjct: 220 LEAHLSDGEVIPCDLVVSAVGLRPRTELA-FAAGLA 254
>3lxd_A FAD-dependent pyridine nucleotide-disulphide oxidoreductase;
glutathione reductase (GR)-like ONFR; HET: FAD; 2.50A
{Novosphingobium aromaticivorans}
Length = 415
Score = 25.6 bits (57), Expect = 10.0
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 60 TAVRLCDGTIIVVDCV 75
T VR+ DG++I D V
Sbjct: 228 TGVRMQDGSVIPADIV 243
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.317 0.131 0.363
Gapped
Lambda K H
0.267 0.0784 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,245,556
Number of extensions: 124045
Number of successful extensions: 376
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 81
Length of query: 161
Length of database: 6,701,793
Length adjustment: 86
Effective length of query: 75
Effective length of database: 4,300,587
Effective search space: 322544025
Effective search space used: 322544025
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.1 bits)