RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2609
(161 letters)
>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 341
Score = 97.5 bits (242), Expect = 1e-25
Identities = 66/134 (49%), Positives = 99/134 (73%), Gaps = 9/134 (6%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDN---------KDTPEEYLINLIDSPGHVDFSSEV 58
+ D+RKDEQERGIT+KS++ISLY + + K +LINLIDSPGHVDFSSEV
Sbjct: 54 FTDTRKDEQERGITIKSTAISLYSEMSDEDVKEIKQKTDGNSFLINLIDSPGHVDFSSEV 113
Query: 59 STAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIY 118
+ A+R+ DG ++VVD +EG+C QT+ L+QA E+I+P++V+NK+DR +LE+++S D+Y
Sbjct: 114 TAALRVTDGALVVVDTIEGVCVQTETVLRQALGERIKPVVVINKVDRALLELQVSKEDLY 173
Query: 119 VHLSQLLEQVNAVM 132
++ +E VN ++
Sbjct: 174 QTFARTVESVNVIV 187
>d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 204
Score = 86.9 bits (215), Expect = 2e-22
Identities = 31/146 (21%), Positives = 62/146 (42%), Gaps = 10/146 (6%)
Query: 13 KDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVV 72
+E+ RGIT+ ++ + + +D PGH D+ + T DG I+VV
Sbjct: 46 PEERARGITINTAHVEYETAKRH-------YSHVDCPGHADYIKNMITGAAQMDGAILVV 98
Query: 73 DCVEGICAQTQVALKQAWLEKIQPIL-VLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAV 131
+G QT+ + A + I+ +NK+D + L + + + LL Q
Sbjct: 99 SAADGPMPQTREHILLARQVGVPYIVVFMNKVDMVDDPELLD--LVEMEVRDLLNQYEFP 156
Query: 132 MGELFASQVMDETAVKTTAQDNETKQ 157
E+ + A++ ++ +T++
Sbjct: 157 GDEVPVIRGSALLALEQMHRNPKTRR 182
>d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus [TaxId: 274]}
Length = 276
Score = 81.7 bits (201), Expect = 6e-20
Identities = 39/115 (33%), Positives = 66/115 (57%), Gaps = 7/115 (6%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
MD + E+ERGIT+ ++ + ++KD + IN+ID+PGHVDF+ EV ++R+ DG
Sbjct: 45 TMDFMEQERERGITITAAVTTCFWKD-------HRINIIDAPGHVDFTIEVERSMRVLDG 97
Query: 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLS 122
I+V D +G+ Q++ +QA K+ I NK+D+ ++ L + L
Sbjct: 98 AIVVFDSSQGVEPQSETVWRQAEKYKVPRIAFANKMDKTGADLWLVIRTMQERLG 152
>d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal
(G) domain {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 239
Score = 71.2 bits (174), Expect = 3e-16
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 15/106 (14%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
+D K E+ERGIT+ + Y + +ID+PGH DF + T D
Sbjct: 58 VLDKLKAERERGITIDIALWKFETPK-------YQVTVIDAPGHRDFIKNMITGTSQADC 110
Query: 68 TIIVVDCVEGIC-------AQTQVALKQAWLEKIQPILV-LNKIDR 105
I+++ G QT+ A+ ++ ++V +NK+D
Sbjct: 111 AILIIAGGVGEFEAGISKDGQTREHALLAFTLGVRQLIVAVNKMDS 156
>d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal
(G) domain {Archaeon Sulfolobus solfataricus [TaxId:
2287]}
Length = 224
Score = 69.1 bits (168), Expect = 1e-15
Identities = 29/114 (25%), Positives = 47/114 (41%), Gaps = 9/114 (7%)
Query: 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAV 62
+ +D K+E+ERG+T+ + + K Y +ID+PGH DF + T
Sbjct: 50 EKFAFLLDRLKEERERGVTINLTFMRFETKK-------YFFTIIDAPGHRDFVKNMITGA 102
Query: 63 RLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLD 116
D I+VV +G Q E I + +D+LI+ + L
Sbjct: 103 SQADAAILVVSAKKGEYEAGMSVEGQTR-EHIILAKTMG-LDQLIVAVNKMDLT 154
>d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu),
N-terminal (G) domain {Cow (Bos taurus), mitochondrial
[TaxId: 9913]}
Length = 196
Score = 65.4 bits (159), Expect = 2e-14
Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 8/98 (8%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
+D+ +E+ RGIT+ ++ + D PGH D+ + T DG
Sbjct: 40 EIDNAPEERARGITINAAHVEYSTAARH-------YAHTDCPGHADYVKNMITGTAPLDG 92
Query: 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILV-LNKID 104
I+VV +G QT+ L A ++ ++V +NK D
Sbjct: 93 CILVVAANDGPMPQTREHLLLARQIGVEHVVVYVNKAD 130
>d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit
cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae
pv. tomato [TaxId: 323]}
Length = 222
Score = 49.1 bits (116), Expect = 3e-08
Identities = 28/127 (22%), Positives = 48/127 (37%), Gaps = 7/127 (5%)
Query: 8 YMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG 67
+D + E+E+GIT+ + + D+PGH ++ ++T CD
Sbjct: 63 LVDGLQAEREQGITIDVAYRYFSTAK-------RKFIIADTPGHEQYTRNMATGASTCDL 115
Query: 68 TIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQ 127
II+VD G+ QT+ A L I+ I+V L + I + E
Sbjct: 116 AIILVDARYGVQTQTRRHSYIASLLGIKHIVVAINKMDLNGFDERVFESIKADYLKFAEG 175
Query: 128 VNAVMGE 134
+
Sbjct: 176 IAFKPTT 182
>d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955
{Pyrococcus abyssi [TaxId: 29292]}
Length = 244
Score = 36.9 bits (84), Expect = 4e-04
Identities = 22/117 (18%), Positives = 35/117 (29%), Gaps = 10/117 (8%)
Query: 24 SSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDG-----TIIVVDCVEGI 78
+ Y +E LID+PG ++ VRL + + + D
Sbjct: 78 MEKFNEYLNKILRLEKENDYVLIDTPGQMETFLFHEFGVRLMENLPYPLVVYISDPEILK 137
Query: 79 CAQTQ-----VALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNA 130
AL I LNK+D L E K + + L ++
Sbjct: 138 KPNDYCFVRFFALLIDLRLGATTIPALNKVDLLSEEEKERHRKYFEDIDYLTARLKL 194
>d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal
(G) domain {Archaeon Methanobacterium
thermoautotrophicum [TaxId: 145262]}
Length = 227
Score = 36.2 bits (82), Expect = 7e-04
Identities = 21/72 (29%), Positives = 30/72 (41%)
Query: 49 PGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDRLIL 108
PGH F++ L D I++VD EG QTQ AL + + ++ NKIDR+
Sbjct: 78 PGHEAFTTLRKRGGALADLAILIVDINEGFKPQTQEALNILRMYRTPFVVAANKIDRIHG 137
Query: 109 EMKLSPLDIYVH 120
Sbjct: 138 WRVHEGRPFMET 149
>d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal
(G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]}
Length = 267
Score = 33.7 bits (76), Expect = 0.005
Identities = 20/99 (20%), Positives = 45/99 (45%), Gaps = 7/99 (7%)
Query: 7 SYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCD 66
+ D + + T+++ L ++ + + L+D+PG+ DF E+ A+ D
Sbjct: 40 TTTDYTPEAKLHRTTVRTGVAPLLFRG-------HRVFLLDAPGYGDFVGEIRGALEAAD 92
Query: 67 GTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKIDR 105
++ V G+ T+ A A + ++V+ K+D+
Sbjct: 93 AALVAVSAEAGVQVGTERAWTVAERLGLPRMVVVTKLDK 131
>d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId:
10090]}
Length = 173
Score = 30.9 bits (69), Expect = 0.045
Identities = 12/103 (11%), Positives = 32/103 (31%), Gaps = 8/103 (7%)
Query: 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAV 62
C++ + + + I D K + + D+ G F + +
Sbjct: 21 CVLFRFSEDAFNSTFISTIGIDFKIRTIELDGK----RIKLQIWDTAGQERFRTITTAYY 76
Query: 63 RLCDGTIIVVDCVEG----ICAQTQVALKQAWLEKIQPILVLN 101
R G ++V D +++ ++ +++ N
Sbjct: 77 RGAMGIMLVYDITNEKSFDNIRNWIRNIEEHASADVEKMILGN 119
>d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId:
9606]}
Length = 175
Score = 29.1 bits (64), Expect = 0.19
Identities = 17/106 (16%), Positives = 35/106 (33%), Gaps = 8/106 (7%)
Query: 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAV 62
++S + + + + + + D K + D+ G + S
Sbjct: 19 NLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKT----IKAQIWDTAGQERYRRITSAYY 74
Query: 63 RLCDGTIIVVDCVEGI----CAQTQVALKQAWLEKIQPILVLNKID 104
R G ++V D + + + L+ I +LV NK D
Sbjct: 75 RGAVGALLVYDIAKHLTYENVERWLKELRDHADSNIVIMLVGNKSD 120
>d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 166
Score = 29.0 bits (64), Expect = 0.19
Identities = 11/72 (15%), Positives = 26/72 (36%), Gaps = 4/72 (5%)
Query: 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAV 62
C++ +++ + + I K ++ + + D+ G F + +
Sbjct: 17 CLLVRFVEDKFNPSFITTIG----IDFKIKTVDINGKKVKLQIWDTAGQERFRTITTAYY 72
Query: 63 RLCDGTIIVVDC 74
R G I+V D
Sbjct: 73 RGAMGIILVYDI 84
>d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId:
10116]}
Length = 169
Score = 28.3 bits (62), Expect = 0.28
Identities = 10/69 (14%), Positives = 25/69 (36%)
Query: 6 SSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLC 65
+S++ D+ + + I K + + + D+ G + + + R
Sbjct: 19 TSFLFRYADDSFTPAFVSTVGIDFKVKTIYRNDKRIKLQIWDTAGQERYRTITTAYYRGA 78
Query: 66 DGTIIVVDC 74
G I++ D
Sbjct: 79 MGFILMYDI 87
>d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 194
Score = 28.3 bits (62), Expect = 0.32
Identities = 17/104 (16%), Positives = 34/104 (32%), Gaps = 8/104 (7%)
Query: 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAV 62
C++ + D + + + K + + + + D+ G F + S+
Sbjct: 21 CLLLRFSDDTYTND----YISTIGVDFKIKTVELDGKTVKLQIWDTAGQERFRTITSSYY 76
Query: 63 RLCDGTIIVVDCV----EGICAQTQVALKQAWLEKIQPILVLNK 102
R G IIV D + + + +LV NK
Sbjct: 77 RGSHGIIIVYDVTDQESFNGVKMWLQEIDRYATSTVLKLLVGNK 120
>d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal
domain {Thermotoga maritima [TaxId: 2336]}
Length = 225
Score = 28.1 bits (62), Expect = 0.39
Identities = 10/43 (23%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 66 DGTIIVVDCVEGICAQTQV--ALKQAWLEKIQPILVLNKIDRL 106
D I+VV + + L A +++ ++V+NK+D
Sbjct: 12 DQVILVVTVKMPETSTYIIDKFLVLAEKNELETVMVINKMDLY 54
>d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 400
Score = 28.2 bits (62), Expect = 0.48
Identities = 13/122 (10%), Positives = 32/122 (26%), Gaps = 4/122 (3%)
Query: 38 PEEYLINLIDSPGHVDFS---SEVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKI 94
P + D PG + ++ + ++ K + K
Sbjct: 104 PNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFIIISATRFKKNDIDIAKAISMMKK 163
Query: 95 QPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFASQVMDETAVKTTAQDNE 154
+ V K+D + + ++L+ + F + E + + N
Sbjct: 164 EFYFVRTKVDS-DITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNV 222
Query: 155 TK 156
Sbjct: 223 CH 224
>d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis
[TaxId: 1423]}
Length = 273
Score = 27.1 bits (59), Expect = 0.92
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
Query: 57 EVSTAVRLCDGTIIVVDCVEGICAQTQVALKQAWLEKIQPILVLNKID 104
EV+ ++L D +VD + ++ + L+ I++LNK D
Sbjct: 8 EVTEKLKLIDIVYELVDARIPMSSRNPMIED--ILKNKPRIMLLNKAD 53
Score = 24.4 bits (52), Expect = 8.7
Identities = 15/125 (12%), Positives = 38/125 (30%), Gaps = 11/125 (8%)
Query: 22 MKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQ 81
K+ + + L+D+PG + E T + D + +
Sbjct: 138 AKTGDRPGITTSQQWVKVGKELELLDTPGILWPKFEDELVGLRLAVTGAIKDSIINLQDV 197
Query: 82 TQVALKQAWLEKIQPILVLNKIDRLILEMKLSPLDIYVHLSQLLEQVNAVMGELFASQVM 141
L+ L + L+ + +I +++L + + G L + ++
Sbjct: 198 AVFGLR-----------FLEEHYPERLKERYGLDEIPEDIAELFDAIGEKRGCLMSGGLI 246
Query: 142 DETAV 146
+
Sbjct: 247 NYDKT 251
>d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId:
9606]}
Length = 177
Score = 26.0 bits (56), Expect = 2.3
Identities = 11/72 (15%), Positives = 22/72 (30%), Gaps = 4/72 (5%)
Query: 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAV 62
++ + D D + K + + + D+ G F + +
Sbjct: 22 SLLLRFTDDTFDPELAATIGVDF----KVKTISVDGNKAKLAIWDTAGQERFRTLTPSYY 77
Query: 63 RLCDGTIIVVDC 74
R G I+V D
Sbjct: 78 RGAQGVILVYDV 89
>d1zkda1 c.66.1.52 (A:2-366) Hypothetical protein RPA4359
{Rhodopseudomonas palustris [TaxId: 1076]}
Length = 365
Score = 24.5 bits (52), Expect = 6.7
Identities = 22/122 (18%), Positives = 37/122 (30%), Gaps = 19/122 (15%)
Query: 24 SSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAVRLCDGTIIVVDCVEGICAQTQ 83
S + + + PG D ++ V L + G Q
Sbjct: 243 GHLRSDVGDTFQAIASHSYADPLQHPGRADLTAHVDFD-ALGRAAESIGARAHGPVTQGA 301
Query: 84 VALKQAWLEKIQPILVLNKIDRL-ILEMKLSP---LDIYVHLSQLLEQVNAVMGELFASQ 139
+L++ L R L K +P DI L +L + MG +F +
Sbjct: 302 ------FLKR------LGIETRALSLMAKATPQVSEDIAGALQRLTGEGRGAMGSMF--K 347
Query: 140 VM 141
V+
Sbjct: 348 VI 349
>d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal
domain {Bacillus subtilis [TaxId: 1423]}
Length = 231
Score = 24.3 bits (52), Expect = 7.8
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 2/41 (4%)
Query: 66 DGTIIVVDCVEGICAQTQV--ALKQAWLEKIQPILVLNKID 104
D ++V V+ + + L IQPI+ + K+D
Sbjct: 12 DQAVLVFSAVQPSFSTALLDRFLVLVEANDIQPIICITKMD 52
>d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId:
9606]}
Length = 171
Score = 24.0 bits (51), Expect = 8.6
Identities = 11/73 (15%), Positives = 24/73 (32%), Gaps = 4/73 (5%)
Query: 3 CMVSSYMDSRKDEQERGITMKSSSISLYYKDNKDTPEEYLINLIDSPGHVDFSSEVSTAV 62
C+V + + + + K + E+ + + D+ G F S +
Sbjct: 20 CLVRRFTQGLFPPGQ----GATIGVDFMIKTVEINGEKVKLQIWDTAGQERFRSITQSYY 75
Query: 63 RLCDGTIIVVDCV 75
R + I+ D
Sbjct: 76 RSANALILTYDIT 88
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.131 0.363
Gapped
Lambda K H
0.267 0.0467 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 536,329
Number of extensions: 23183
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 74
Number of HSP's successfully gapped: 27
Length of query: 161
Length of database: 2,407,596
Length adjustment: 78
Effective length of query: 83
Effective length of database: 1,336,656
Effective search space: 110942448
Effective search space used: 110942448
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 49 (23.3 bits)