Query psy2610
Match_columns 133
No_of_seqs 121 out of 680
Neff 4.9
Searched_HMMs 46136
Date Fri Aug 16 20:37:21 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0469|consensus 100.0 6.9E-30 1.5E-34 227.1 5.3 101 33-133 190-293 (842)
2 KOG0468|consensus 99.9 4E-26 8.7E-31 207.1 7.5 92 41-132 295-387 (971)
3 KOG0467|consensus 99.9 3.4E-24 7.3E-29 195.8 5.5 93 39-131 181-273 (887)
4 PLN00116 translation elongatio 99.8 3.5E-19 7.6E-24 164.3 9.4 91 41-131 198-289 (843)
5 PTZ00416 elongation factor 2; 99.7 1.3E-17 2.9E-22 153.8 8.3 89 42-130 193-284 (836)
6 cd01885 EF2 EF2 (for archaea a 99.1 4.8E-11 1E-15 95.4 2.6 34 40-73 177-210 (222)
7 cd04167 Snu114p Snu114p subfam 98.3 3.9E-07 8.4E-12 70.7 3.3 32 42-73 170-201 (213)
8 PRK07560 elongation factor EF- 95.0 0.027 5.9E-07 52.1 4.1 30 42-71 189-218 (731)
9 TIGR00490 aEF-2 translation el 94.2 0.019 4E-07 53.1 1.0 30 41-70 187-216 (720)
10 cd01639 IMPase IMPase, inosito 56.6 8.6 0.00019 30.3 2.2 26 41-66 76-101 (244)
11 PLN02553 inositol-phosphate ph 51.9 12 0.00025 30.2 2.2 26 41-66 86-111 (270)
12 PRK10757 inositol monophosphat 51.7 12 0.00025 30.3 2.2 26 41-66 79-104 (267)
13 cd01636 FIG FIG, FBPase/IMPase 50.9 13 0.00029 27.9 2.3 27 41-67 79-105 (184)
14 cd01642 Arch_FBPase_2 Putative 49.1 16 0.00034 29.5 2.5 25 42-66 76-100 (244)
15 cd01637 IMPase_like Inositol-m 48.2 13 0.00029 28.9 2.0 27 40-66 74-100 (238)
16 PF00165 HTH_AraC: Bacterial r 45.0 23 0.0005 20.5 2.2 25 60-84 17-41 (42)
17 cd01643 Bacterial_IMPase_like_ 41.7 21 0.00045 28.5 2.2 26 41-66 72-97 (242)
18 TIGR02067 his_9_proposed histi 41.2 23 0.00049 28.2 2.3 26 41-66 75-100 (251)
19 cd01517 PAP_phosphatase PAP-ph 40.1 18 0.0004 29.2 1.7 24 42-66 74-97 (274)
20 cd00383 trans_reg_C Effector d 36.7 73 0.0016 20.7 4.0 49 42-92 5-57 (95)
21 TIGR01843 type_I_hlyD type I s 35.3 36 0.00078 28.3 2.7 23 110-132 401-423 (423)
22 COG1312 UxuA D-mannonate dehyd 34.3 44 0.00096 29.4 3.2 36 57-94 158-195 (362)
23 PRK09685 DNA-binding transcrip 33.6 36 0.00077 27.2 2.4 27 60-86 273-300 (302)
24 PF14056 DUF4250: Domain of un 32.8 45 0.00098 21.7 2.3 27 74-100 28-55 (55)
25 PLN02737 inositol monophosphat 32.4 29 0.00063 30.0 1.8 25 42-66 153-177 (363)
26 PRK10931 adenosine-3'(2'),5'-b 32.3 17 0.00037 28.9 0.3 25 42-66 79-103 (246)
27 PLN02911 inositol-phosphate ph 31.3 34 0.00074 28.3 1.9 25 42-66 111-135 (296)
28 TIGR01331 bisphos_cysQ 3'(2'), 31.1 19 0.00042 28.6 0.4 25 42-66 78-102 (249)
29 cd01638 CysQ CysQ, a 3'-Phosph 30.0 25 0.00054 27.8 0.9 26 41-66 75-100 (242)
30 PRK12676 bifunctional inositol 29.6 42 0.00091 27.0 2.2 25 42-66 83-107 (263)
31 COG0483 SuhB Archaeal fructose 29.2 21 0.00045 29.1 0.3 25 42-66 81-105 (260)
32 PF13413 HTH_25: Helix-turn-he 29.1 59 0.0013 21.0 2.4 19 65-83 44-62 (62)
33 cd01641 Bacterial_IMPase_like_ 28.7 49 0.0011 26.2 2.4 26 41-66 73-98 (248)
34 cd07013 S14_ClpP Caseinolytic 27.8 57 0.0012 24.6 2.5 31 66-96 121-151 (162)
35 PRK07080 hypothetical protein; 26.2 1.2E+02 0.0027 26.2 4.5 46 42-90 268-317 (317)
36 cd01515 Arch_FBPase_1 Archaeal 25.6 31 0.00067 27.6 0.7 25 42-66 78-102 (257)
37 PF15065 NCU-G1: Lysosomal tra 25.1 99 0.0021 27.0 3.8 46 5-58 23-68 (350)
38 KOG1785|consensus 24.6 33 0.00071 31.3 0.7 57 1-62 332-400 (563)
39 PF00459 Inositol_P: Inositol 24.2 17 0.00036 29.0 -1.1 26 41-66 85-110 (270)
40 PHA02107 hypothetical protein 23.8 61 0.0013 26.2 2.1 50 1-50 115-169 (216)
41 PRK10130 transcriptional regul 23.7 65 0.0014 27.5 2.4 28 55-82 312-340 (350)
42 PRK10219 DNA-binding transcrip 22.7 86 0.0019 21.3 2.5 24 64-87 84-107 (107)
43 PRK10572 DNA-binding transcrip 22.7 81 0.0018 25.1 2.6 28 60-87 257-285 (290)
44 PF12833 HTH_18: Helix-turn-he 22.7 1E+02 0.0022 19.7 2.7 23 64-86 59-81 (81)
45 PF00574 CLP_protease: Clp pro 21.6 81 0.0017 23.7 2.3 31 66-96 137-167 (182)
46 PF12244 DUF3606: Protein of u 20.9 91 0.002 20.0 2.1 18 70-87 24-41 (57)
No 1
>KOG0469|consensus
Probab=99.96 E-value=6.9e-30 Score=227.11 Aligned_cols=101 Identities=31% Similarity=0.635 Sum_probs=91.3
Q ss_pred CccccCCCCCeeEecCCCceEeeecccceeeehhHHHHHHHhhcCCCHHHHHHhhhcccceecCCCcEecCCCc---CCC
Q psy2610 33 TGLEDADDSDLYFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGDYYLNAKAKRILKGAQE---KAK 109 (133)
Q Consensus 33 ~~~~~~~~~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~~K~gi~~~~L~k~LWGD~Yyd~ktKk~~~~~~~---~~~ 109 (133)
+++.+....+.++.|++|+|.||||||||+|||+|||++|++|||++..+|+++||||.|||+++|+|.++... +..
T Consensus 190 sTy~d~~~g~~~v~P~kg~v~F~SGLhGWaFTlrQFa~~Y~~KF~~~~~kmm~~LWg~~~f~~ktkk~~~s~t~~~gn~~ 269 (842)
T KOG0469|consen 190 STYGDGPMGDVQVDPEKGTVGFGSGLHGWAFTLRQFAEMYAKKFGIDVRKMMNRLWGDNFFNPKTKKWSKSATDAEGNPL 269 (842)
T ss_pred EecccCCcCceEecCCCCceeeccccchhhhhHHHHHHHHHHHhCCcHHHHHHHhhcccccCccCCcccccccccccCcc
Confidence 45666677889999999999999999999999999999999999999999999999999999999999977532 223
Q ss_pred CchhhHHhHHHHHHHHHHHhccCC
Q psy2610 110 APLFVEFVLKNVVTLYETVAVRKK 133 (133)
Q Consensus 110 kr~FVqfILePI~kIy~~v~~~~~ 133 (133)
+|.||+|||+|||++|++||+-+|
T Consensus 270 ~r~F~~~iLdPIykvfdaimN~kk 293 (842)
T KOG0469|consen 270 RRAFCMFILDPIYKVFDAIMNFKK 293 (842)
T ss_pred ccceeEEeechHHHHHHHHhhccH
Confidence 789999999999999999997664
No 2
>KOG0468|consensus
Probab=99.93 E-value=4e-26 Score=207.05 Aligned_cols=92 Identities=35% Similarity=0.621 Sum_probs=85.4
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHHHHhhcC-CCHHHHHHhhhcccceecCCCcEecCCCcCCCCchhhHHhHH
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLG-IREDILRKTLWGDYYLNAKAKRILKGAQEKAKAPLFVEFVLK 119 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~~K~g-i~~~~L~k~LWGD~Yyd~ktKk~~~~~~~~~~kr~FVqfILe 119 (133)
....+||..|||||||+..||||||.+||++|++..| ++.+.|++|||||.||+++|+||.++++....+|+||+|||+
T Consensus 295 ~~~~~sP~~gNvcFaS~~~g~cFtl~sFak~Y~~~~~~~~~d~Fa~RLWGdvYf~~ktrkF~kk~~~~~~~rsFVeFILe 374 (971)
T KOG0468|consen 295 DNPVVSPILGNVCFASGKLGFCFTLKSFAKLYADAHGHIDVDDFAKRLWGDVYFHSKTRKFVKKPPDGSGSRSFVEFILE 374 (971)
T ss_pred cccccccccCceeeeccccceeeehHHHHHHHHHhcCCcchhhhhhhhhccccccccccccccCCCCCcccchhhhhhHh
Confidence 5678999999999999999999999999999999864 789999999999999999999999998776668999999999
Q ss_pred HHHHHHHHHhccC
Q psy2610 120 NVVTLYETVAVRK 132 (133)
Q Consensus 120 PI~kIy~~v~~~~ 132 (133)
|+|||+..++...
T Consensus 375 PlYKi~sq~igd~ 387 (971)
T KOG0468|consen 375 PLYKIFSQVIGDE 387 (971)
T ss_pred HHHHHHHHHhcch
Confidence 9999999998754
No 3
>KOG0467|consensus
Probab=99.89 E-value=3.4e-24 Score=195.79 Aligned_cols=93 Identities=48% Similarity=0.976 Sum_probs=87.6
Q ss_pred CCCCeeEecCCCceEeeecccceeeehhHHHHHHHhhcCCCHHHHHHhhhcccceecCCCcEecCCCcCCCCchhhHHhH
Q psy2610 39 DDSDLYFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGDYYLNAKAKRILKGAQEKAKAPLFVEFVL 118 (133)
Q Consensus 39 ~~~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~~K~gi~~~~L~k~LWGD~Yyd~ktKk~~~~~~~~~~kr~FVqfIL 118 (133)
.++..+|+|++|||+||||++||+|.+++||++|++|+|.+.+.|.+.||||+|+++++|++....+-+|++|+|+||||
T Consensus 181 ~d~~~~F~p~kgNVif~~A~~~~~f~~~~fak~~~~kl~~k~~al~k~lwgd~y~~~ktk~I~~~~~~~grkplf~~~vl 260 (887)
T KOG0467|consen 181 EDEEITFGPEDGNVIFASALDGWGFGIEQFAKFYAKKLGLKDAALLKFLWGDRYIDPKTKRICEGKKLKGRKPLFVQFVL 260 (887)
T ss_pred hhcceeecCCCCcEEEEEecccccccHHHHHHHHHHhcChhhhhhhhhhccceeecchhhhhhcccCcccCCCccceeeh
Confidence 37789999999999999999999999999999999999999999999999999999999999988877788999999999
Q ss_pred HHHHHHHHHHhcc
Q psy2610 119 KNVVTLYETVAVR 131 (133)
Q Consensus 119 ePI~kIy~~v~~~ 131 (133)
+|||+||+.+...
T Consensus 261 e~lw~iy~~~~~~ 273 (887)
T KOG0467|consen 261 ENLWRIYELALKS 273 (887)
T ss_pred hhHHHHHHHHhcc
Confidence 9999999976644
No 4
>PLN00116 translation elongation factor EF-2 subunit; Provisional
Probab=99.78 E-value=3.5e-19 Score=164.30 Aligned_cols=91 Identities=25% Similarity=0.626 Sum_probs=81.4
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHHHHhhcCCCHHHHHHhhhcccceecCCCcEecCCC-cCCCCchhhHHhHH
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGDYYLNAKAKRILKGAQ-EKAKAPLFVEFVLK 119 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~~K~gi~~~~L~k~LWGD~Yyd~ktKk~~~~~~-~~~~kr~FVqfILe 119 (133)
++++|+|.+|||+|||+++||+|++++||.+|+.|++++.+.|.++||||+||+++++++...+. ..+.++.|++|||+
T Consensus 198 ~~~~~~P~~~nv~F~s~~~~~~~~l~~~~~~y~~~~~~~~~~l~~~lwg~~~~~~~~~~~~~~~~~~~~~~~~f~~~il~ 277 (843)
T PLN00116 198 GDVQVYPEKGTVAFSAGLHGWAFTLTNFAKMYASKFGVDESKMMERLWGENFFDPATKKWTTKNTGSPTCKRGFVQFCYE 277 (843)
T ss_pred CceEEccCCCeeeeeecccCEEEEhHHHHHHHHHHhCCcHHHHHHHhhccceEcCCCceEEecCCCCchhhHHHHHHHHH
Confidence 45789999999999999999999999999999999999999999999999999999998877652 33346789999999
Q ss_pred HHHHHHHHHhcc
Q psy2610 120 NVVTLYETVAVR 131 (133)
Q Consensus 120 PI~kIy~~v~~~ 131 (133)
|+|++|++++..
T Consensus 278 ~~~~l~e~v~~~ 289 (843)
T PLN00116 278 PIKQIINTCMND 289 (843)
T ss_pred HHHHHHHHHHhc
Confidence 999999998743
No 5
>PTZ00416 elongation factor 2; Provisional
Probab=99.72 E-value=1.3e-17 Score=153.84 Aligned_cols=89 Identities=35% Similarity=0.784 Sum_probs=79.2
Q ss_pred CeeEecCCCceEeeecccceeeehhHHHHHHHhhcCCCHHHHHHhhhcccceecCCCcEecCCCc---CCCCchhhHHhH
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGDYYLNAKAKRILKGAQE---KAKAPLFVEFVL 118 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~~K~gi~~~~L~k~LWGD~Yyd~ktKk~~~~~~~---~~~kr~FVqfIL 118 (133)
+++|+|..|||.|+|+.+||+|||++|+.+|+++|+++...|.+.||||+||+++++++...+.. ...+++|++|+|
T Consensus 193 ~~~~~p~~~~vp~~s~~~~~~f~~~~F~~~y~~~~~~~~~~l~~~~wg~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~ 272 (836)
T PTZ00416 193 DVQVYPEKGTVAFGSGLQGWAFTLTTFARIYAKKFGVEESKMMERLWGDNFFDAKTKKWIKDETNAQGKKLKRAFCQFIL 272 (836)
T ss_pred ceecceeccEEEEEeccccceeehHHhhhhhhhhcCCcHHHHHHHHhccccccCCCCEEEeccCCccccccchHHHHHHH
Confidence 46799999999999999999999999999999999999999999999999999998888765311 123789999999
Q ss_pred HHHHHHHHHHhc
Q psy2610 119 KNVVTLYETVAV 130 (133)
Q Consensus 119 ePI~kIy~~v~~ 130 (133)
+|+|++|++++.
T Consensus 273 ~~~~~l~e~~~~ 284 (836)
T PTZ00416 273 DPICQLFDAVMN 284 (836)
T ss_pred HHHHHHHHHHHh
Confidence 999999998864
No 6
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=99.08 E-value=4.8e-11 Score=95.35 Aligned_cols=34 Identities=62% Similarity=1.221 Sum_probs=31.5
Q ss_pred CCCeeEecCCCceEeeecccceeeehhHHHHHHH
Q psy2610 40 DSDLYFSPDRGNVVFASAFDGWGFTIDDFARLYS 73 (133)
Q Consensus 40 ~~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~ 73 (133)
++++.|||++|||+||||++|||||+++||++|.
T Consensus 177 ~~~~~~~p~~gnv~f~S~~~gw~f~~~~f~~~~~ 210 (222)
T cd01885 177 DEKWYFSPQKGNVAFGSALHGWGFTIIKFARIYA 210 (222)
T ss_pred cCCcEEeeCCCcEEEEecccCEEeccccccchHH
Confidence 4567899999999999999999999999999994
No 7
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.33 E-value=3.9e-07 Score=70.67 Aligned_cols=32 Identities=47% Similarity=0.863 Sum_probs=29.9
Q ss_pred CeeEecCCCceEeeecccceeeehhHHHHHHH
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTIDDFARLYS 73 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~ 73 (133)
++.|.|.++||+|+||++||+|++.+||++|.
T Consensus 170 ~~~~~p~~~nv~~~s~~~~w~~~~~~~~~~~~ 201 (213)
T cd04167 170 SFLFSPENGNVCFASSKFGFCFTLESFAKKYG 201 (213)
T ss_pred ceEeccCCCeEEEEecCCCeEEecHHHHhhhh
Confidence 36799999999999999999999999999993
No 8
>PRK07560 elongation factor EF-2; Reviewed
Probab=95.03 E-value=0.027 Score=52.07 Aligned_cols=30 Identities=20% Similarity=0.452 Sum_probs=26.3
Q ss_pred CeeEecCCCceEeeecccceeeehhHHHHH
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTIDDFARL 71 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~ 71 (133)
.+.++|.+|||+|+||++||+|+++.+.+.
T Consensus 189 ~~~~~~~~~~v~~~sa~~~~~~~~~~~~~~ 218 (731)
T PRK07560 189 KWKVDVEDGTVAFGSALYNWAISVPMMQKT 218 (731)
T ss_pred ceeecCCCCcEeeeecccccceeHHHHHHh
Confidence 567899999999999999999999977553
No 9
>TIGR00490 aEF-2 translation elongation factor aEF-2. This model represents archaeal elongation factor 2, a protein more similar to eukaryotic EF-2 than to bacterial EF-G, both in sequence similarity and in sharing with eukaryotes the property of having a diphthamide (modified His) residue at a conserved position. The diphthamide can be ADP-ribosylated by diphtheria toxin in the presence of NAD.
Probab=94.22 E-value=0.019 Score=53.10 Aligned_cols=30 Identities=20% Similarity=0.540 Sum_probs=26.5
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHH
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFAR 70 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~ 70 (133)
+.+.++|+.|||+|+|++++|+|++++|.+
T Consensus 187 ~~~~~~~~~~~~~f~s~~~~~~~~~~~~~~ 216 (720)
T TIGR00490 187 DKWKVRVEDGSVAFGSAYYNWAISVPSMKK 216 (720)
T ss_pred hceEechhhCCHHHHhhhhcccccchhHhh
Confidence 346799999999999999999999998843
No 10
>cd01639 IMPase IMPase, inositol monophosphatase and related domains. A family of Mg++ dependent phosphatases, inhibited by lithium, many of which may act on inositol monophosphate substrate. They dephosphorylate inositol phosphate to generate inositol, which may be recycled into inositol lipids; in eukaryotes IMPase plays a vital role in intracellular signaling. IMPase is one of the proposed targets of Li+ therapy in manic-depressive illness. This family contains some bacterial members of the inositol monophosphatase family classified as SuhB-like. E. coli SuhB has been suggested to participate in posstranscriptional control of gene expression, and its inositol monophosphatase activity doesn't appear to be sufficient for its cellular function. It has been proposed, that SuhB plays a role in the biosynthesis of phosphatidylinositol in mycobacteria.
Probab=56.61 E-value=8.6 Score=30.29 Aligned_cols=26 Identities=19% Similarity=0.391 Sum_probs=23.7
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
--|.++|..|+--|..++..||.+|-
T Consensus 76 ~~WvIDPIDGT~nf~~g~p~~~vsia 101 (244)
T cd01639 76 PTWIIDPLDGTTNFVHGFPHFAVSIA 101 (244)
T ss_pred cEEEEecccChhHHhcCCCcEEEEEE
Confidence 45899999999999999999998885
No 11
>PLN02553 inositol-phosphate phosphatase
Probab=51.88 E-value=12 Score=30.20 Aligned_cols=26 Identities=19% Similarity=0.225 Sum_probs=23.8
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-.|.++|..|+.-|..++..||.+|-
T Consensus 86 ~~WiIDPIDGT~NF~~g~p~~avsIa 111 (270)
T PLN02553 86 PTWIVDPLDGTTNFVHGFPFVCVSIG 111 (270)
T ss_pred cEEEEecccchhhHhhcCCceEEEEE
Confidence 35899999999999999999999885
No 12
>PRK10757 inositol monophosphatase; Provisional
Probab=51.67 E-value=12 Score=30.25 Aligned_cols=26 Identities=15% Similarity=0.294 Sum_probs=23.7
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
--|.++|..|+.-|..++..||.+|-
T Consensus 79 ~~WiIDPIDGT~nf~~g~p~~~vsia 104 (267)
T PRK10757 79 VQWVIDPLDGTTNFIKRLPHFAVSIA 104 (267)
T ss_pred CEEEEeCccCchHHHhCCCcEEEEEE
Confidence 35899999999999999999999885
No 13
>cd01636 FIG FIG, FBPase/IMPase/glpX-like domain. A superfamily of metal-dependent phosphatases with various substrates. Fructose-1,6-bisphospatase (both the major and the glpX-encoded variant) hydrolyze fructose-1,6,-bisphosphate to fructose-6-phosphate in gluconeogenesis. Inositol-monophosphatases and inositol polyphosphatases play vital roles in eukaryotic signalling, as they participate in metabolizing the messenger molecule Inositol-1,4,5-triphosphate. Many of these enzymes are inhibited by Li+.
Probab=50.88 E-value=13 Score=27.88 Aligned_cols=27 Identities=15% Similarity=0.089 Sum_probs=24.1
Q ss_pred CCeeEecCCCceEeeecccceeeehhH
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDD 67 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~ 67 (133)
--|.++|..|+--|..++..||-++--
T Consensus 79 ~~WiiDPiDGT~nf~~g~p~~~vsial 105 (184)
T cd01636 79 YTWVIDPIDGTKNFINGLPFVAVVIAV 105 (184)
T ss_pred eEEEEecccChHHHHhCCCCEEEeHHH
Confidence 458999999999999999999988853
No 14
>cd01642 Arch_FBPase_2 Putative fructose-1,6-bisphosphatase or related enzymes of inositol monophosphatase family. These are Mg++ dependent phosphatases. Members in this family may have fructose-1,6-bisphosphatase and/or inositol-monophosphatase activity. Fructose-1,6-bisphosphatase catalyzes the hydrolysis of fructose-1,6-biphosphate into fructose-6-phosphate and is critical in gluconeogenesis pathway.
Probab=49.11 E-value=16 Score=29.47 Aligned_cols=25 Identities=12% Similarity=0.210 Sum_probs=23.4
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+.=|..++..||.+|-
T Consensus 76 ~WiIDPIDGT~NFi~g~P~favsIa 100 (244)
T cd01642 76 IAVLDPLDGSTNYLSGIPFYSVSVA 100 (244)
T ss_pred EEEEeCCcCcHHHHcCCCCeEEEEE
Confidence 4899999999999999999999985
No 15
>cd01637 IMPase_like Inositol-monophosphatase-like domains. This family of phosphatases is dependent on bivalent metal ions such as Mg++, and many members are inhibited by Li+ (which is thought to displace a bivalent ion in the active site). Substrates include fructose-1,6-bisphosphate, inositol poly- and monophosphates, PAP and PAPS, sedoheptulose-1,7-bisphosphate and probably others.
Probab=48.22 E-value=13 Score=28.88 Aligned_cols=27 Identities=15% Similarity=0.309 Sum_probs=23.7
Q ss_pred CCCeeEecCCCceEeeecccceeeehh
Q psy2610 40 DSDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 40 ~~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
+--|.++|..|+--|..++..||-++-
T Consensus 74 ~~~wviDPIDGT~nf~~g~p~~~vsia 100 (238)
T cd01637 74 GRVWVIDPIDGTTNFVAGLPNFAVSIA 100 (238)
T ss_pred CcEEEEcceeChhhhhcCCCCEEEEEE
Confidence 345899999999999999999998875
No 16
>PF00165 HTH_AraC: Bacterial regulatory helix-turn-helix proteins, AraC family; PDB: 1WPK_A 1ZGW_A 1U8B_A.
Probab=45.00 E-value=23 Score=20.55 Aligned_cols=25 Identities=28% Similarity=0.518 Sum_probs=18.1
Q ss_pred ceeeehhHHHHHHHhhcCCCHHHHH
Q psy2610 60 GWGFTIDDFARLYSAKLGIREDILR 84 (133)
Q Consensus 60 GW~Ftl~~FA~~Y~~K~gi~~~~L~ 84 (133)
-++|+...|.+.+.+.+|+.+.+..
T Consensus 17 ~~g~S~~~f~r~Fk~~~g~tp~~y~ 41 (42)
T PF00165_consen 17 QAGFSPSYFSRLFKKETGMTPKQYR 41 (42)
T ss_dssp HHTS-HHHHHHHHHHHTSS-HHHHH
T ss_pred HHCCCHHHHHHHHHHHHCcCHHHHh
Confidence 3567888999999998999887654
No 17
>cd01643 Bacterial_IMPase_like_2 Bacterial family of Mg++ dependent phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate inositol monophosphate or similar substrates.
Probab=41.68 E-value=21 Score=28.46 Aligned_cols=26 Identities=23% Similarity=0.365 Sum_probs=23.6
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
.-|.++|..|+.-|..++..||.+|-
T Consensus 72 ~~WiIDPIDGT~nF~~g~p~~~vsia 97 (242)
T cd01643 72 WYWVIDPIDGTTNFARGIPIWAISIA 97 (242)
T ss_pred CEEEEeCccChHHHhcCCCceEEEEE
Confidence 35889999999999999999999885
No 18
>TIGR02067 his_9_proposed histidinol-phosphate phosphatase HisN, inositol monophosphatase family. This subfamily belongs to the inositol monophosphatase family (pfam00459). The members of this family consist of no more than one per species and are found only in species in which histidine is synthesized de novo but no histidinol phosphatase can be found in either of the two described families (TIGR01261, TIGR01856). In at least one species, the member of this family is found near known histidine biosynthesis genes.
Probab=41.15 E-value=23 Score=28.20 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=23.4
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
.-|.++|..|+.-|..++..||.+|-
T Consensus 75 ~~WiiDPIDGT~nF~~g~p~~~vsia 100 (251)
T TIGR02067 75 RVWVLDPIDGTKSFIRGVPVWGTLIA 100 (251)
T ss_pred eEEEEecCcChhHHhcCCCceEEEEE
Confidence 35889999999999999999998885
No 19
>cd01517 PAP_phosphatase PAP-phosphatase_like domains. PAP-phosphatase is a member of the inositol monophosphatase family, and catalyses the hydrolysis of 3'-phosphoadenosine-5'-phosphate (PAP) to AMP. In Saccharomyces cerevisiae, HAL2 (MET22) is involved in methionine biosynthesis and provides increased salt tolerance when over-expressed. Bacterial members of this domain family may differ in their substrate specificity and dephosphorylate different targets, as the substrate binding site does not appear to be conserved in that sub-set.
Probab=40.12 E-value=18 Score=29.17 Aligned_cols=24 Identities=13% Similarity=0.137 Sum_probs=22.1
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+.-|..++ .||.+|-
T Consensus 74 ~WiIDPIDGT~nfv~g~-~~~vsIa 97 (274)
T cd01517 74 FWVLDPIDGTKGFLRGD-QFAVALA 97 (274)
T ss_pred EEEEcCCcCchhhhcCC-ceEEEEE
Confidence 48999999999999999 9998884
No 20
>cd00383 trans_reg_C Effector domain of response regulator. Bacteria and certain eukaryotes like protozoa and higher plants use two-component signal transduction systems to detect and respond to changes in the environment. The system consists of a sensor histidine kinase and a response regulator. The former autophosphorylates in a histidine residue on detecting an external stimulus. The phosphate is then transferred to an invariant aspartate residue in a highly conserved receiver domain of the response regulator. Phosphorylation activates a variable effector domain of the response regulator, which triggers the cellular response. The C-terminal effector domain contains DNA and RNA polymerase binding sites. Several dimers or monomers bind head to tail to small tandem repeats upstream of the genes. The RNA polymerase binding sites interact with the alpha or sigma subunite of RNA polymerase.
Probab=36.69 E-value=73 Score=20.75 Aligned_cols=49 Identities=27% Similarity=0.472 Sum_probs=33.3
Q ss_pred CeeEecCCCceEeeecccceeeehhHHHHH--HHhhc--CCCHHHHHHhhhcccc
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKL--GIREDILRKTLWGDYY 92 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~--gi~~~~L~k~LWGD~Y 92 (133)
++.|+|....|.+.. .-..+|-.+++=+ .+..- -++.+.|.+.+||+..
T Consensus 5 ~~~~d~~~~~l~~~~--~~v~Lt~~e~~lL~~L~~~~~~~vs~~~l~~~lw~~~~ 57 (95)
T cd00383 5 DLVLDPARREVTRDG--EPVELTPKEFELLELLARNPGRVLSREQLLEAVWGDDY 57 (95)
T ss_pred CEEEehhhCEEEECC--EEEEeCHHHHHHHHHHHhCCCCcCCHHHHHHHhcCCCC
Confidence 577888888776543 4566776666543 23332 3788999999999754
No 21
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=35.26 E-value=36 Score=28.27 Aligned_cols=23 Identities=13% Similarity=0.281 Sum_probs=20.1
Q ss_pred CchhhHHhHHHHHHHHHHHhccC
Q psy2610 110 APLFVEFVLKNVVTLYETVAVRK 132 (133)
Q Consensus 110 kr~FVqfILePI~kIy~~v~~~~ 132 (133)
++...+++|+||++++..++.++
T Consensus 401 ~~~~~~~~l~~~~~~~~~~~~~~ 423 (423)
T TIGR01843 401 ERTVIEYLLKPITDSVQEALRER 423 (423)
T ss_pred CccHHHHHHHHHHHHHHHHhcCC
Confidence 66789999999999999988764
No 22
>COG1312 UxuA D-mannonate dehydratase [Carbohydrate transport and metabolism]
Probab=34.26 E-value=44 Score=29.43 Aligned_cols=36 Identities=36% Similarity=0.751 Sum_probs=29.2
Q ss_pred ccccee--eehhHHHHHHHhhcCCCHHHHHHhhhccccee
Q psy2610 57 AFDGWG--FTIDDFARLYSAKLGIREDILRKTLWGDYYLN 94 (133)
Q Consensus 57 al~GW~--Ftl~~FA~~Y~~K~gi~~~~L~k~LWGD~Yyd 94 (133)
|+-||. +|+.+|.++...--+|+.++|.+.| .+|++
T Consensus 158 glPG~~~~~tl~~~~~~~~~y~~Id~~~L~~nL--~yFL~ 195 (362)
T COG1312 158 GLPGWEEGYTLDQFRELLELYGGIDEEKLWENL--AYFLK 195 (362)
T ss_pred CCCCCcccccHHHHHHHHHHhcCCCHHHHHHHH--HHHHH
Confidence 899976 9999999999876679998888877 45543
No 23
>PRK09685 DNA-binding transcriptional activator FeaR; Provisional
Probab=33.63 E-value=36 Score=27.17 Aligned_cols=27 Identities=22% Similarity=0.711 Sum_probs=20.7
Q ss_pred ceeee-hhHHHHHHHhhcCCCHHHHHHh
Q psy2610 60 GWGFT-IDDFARLYSAKLGIREDILRKT 86 (133)
Q Consensus 60 GW~Ft-l~~FA~~Y~~K~gi~~~~L~k~ 86 (133)
.|||+ ...|++.|.+.+|++|.+..+.
T Consensus 273 ~~GF~d~s~Fsr~Fkk~~G~sP~~yR~~ 300 (302)
T PRK09685 273 KWGFSDSSHFSTAFKQRFGVSPGEYRRK 300 (302)
T ss_pred HhCCCCHHHHHHHHHHHHCcCHHHHHhh
Confidence 35554 6889999999999998877653
No 24
>PF14056 DUF4250: Domain of unknown function (DUF4250)
Probab=32.81 E-value=45 Score=21.71 Aligned_cols=27 Identities=15% Similarity=0.267 Sum_probs=21.3
Q ss_pred hhcCCCHHHHHHhhhc-ccceecCCCcE
Q psy2610 74 AKLGIREDILRKTLWG-DYYLNAKAKRI 100 (133)
Q Consensus 74 ~K~gi~~~~L~k~LWG-D~Yyd~ktKk~ 100 (133)
..++++.+.|.++|=. +|.|++++++|
T Consensus 28 ~~~~id~~~l~~kL~~~Gy~Y~~~~NQF 55 (55)
T PF14056_consen 28 YDYDIDKEELEEKLASIGYEYDEEQNQF 55 (55)
T ss_pred HHhCCCHHHHHHHHHHcCCeEchhhCCC
Confidence 3467899999999955 78899988764
No 25
>PLN02737 inositol monophosphatase family protein
Probab=32.38 E-value=29 Score=29.99 Aligned_cols=25 Identities=16% Similarity=0.373 Sum_probs=23.4
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+.-|..++..||.+|-
T Consensus 153 ~WiIDPIDGT~NFv~G~P~faVsIA 177 (363)
T PLN02737 153 LWCIDPLDGTTNFAHGYPSFAVSVG 177 (363)
T ss_pred EEEEecccCHHHHHhCCCCeEEEEE
Confidence 5899999999999999999999985
No 26
>PRK10931 adenosine-3'(2'),5'-bisphosphate nucleotidase; Provisional
Probab=32.33 E-value=17 Score=28.90 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=23.2
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+.-|..++..||.+|-
T Consensus 79 ~WiIDPIDGT~nF~~g~p~~~vsIa 103 (246)
T PRK10931 79 YWLVDPLDGTKEFIKRNGEFTVNIA 103 (246)
T ss_pred EEEEecCcChHHHHcCCCCEEEEEE
Confidence 3889999999999999999999885
No 27
>PLN02911 inositol-phosphate phosphatase
Probab=31.25 E-value=34 Score=28.30 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=23.3
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+.=|.-++..||.+|-
T Consensus 111 ~WiIDPIDGT~NFv~G~p~favsIa 135 (296)
T PLN02911 111 VWVLDPIDGTKSFITGKPLFGTLIA 135 (296)
T ss_pred EEEEeCCcChHHHhcCCCceEEEEE
Confidence 5899999999999999999999985
No 28
>TIGR01331 bisphos_cysQ 3'(2'),5'-bisphosphate nucleotidase, bacterial. Sulfate is incorporated into 3-phosphoadenylylsulfate, PAPS, for utilization in pathways such as methionine biosynthesis. Transfer of sulfate from PAPS to an acceptor leaves adenosine 3'-5'-bisphosphate, APS. This model describes a form found in bacteria of the enzyme 3'(2'),5'-bisphosphate nucleotidase, which removes the 3'-phosphate from APS to regenerate AMP and help drive the cycle.
Probab=31.09 E-value=19 Score=28.64 Aligned_cols=25 Identities=16% Similarity=0.170 Sum_probs=23.2
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+.-|..++..||.+|-
T Consensus 78 ~WvIDPIDGT~nF~~G~p~~~vsIa 102 (249)
T TIGR01331 78 FWLVDPLDGTKEFINRNGDFTVNIA 102 (249)
T ss_pred EEEEcCCcChHHHhcCCCcEEEEEE
Confidence 4899999999999999999999885
No 29
>cd01638 CysQ CysQ, a 3'-Phosphoadenosine-5'-phosphosulfate (PAPS) 3'-phosphatase, is a bacterial member of the inositol monophosphatase family. It has been proposed that CysQ helps control intracellular levels of PAPS, which is an intermediate in cysteine biosynthesis (a principal route of sulfur assimilation).
Probab=30.01 E-value=25 Score=27.76 Aligned_cols=26 Identities=15% Similarity=0.170 Sum_probs=23.5
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
.-|.++|..|+--|..++..||-++-
T Consensus 75 ~~WviDPIDGT~Nfv~g~p~~~isia 100 (242)
T cd01638 75 RFWLVDPLDGTREFIKGNGEFAVNIA 100 (242)
T ss_pred EEEEEecccChHHHhcCCCCeEEEEE
Confidence 35889999999999999999998876
No 30
>PRK12676 bifunctional inositol-1 monophosphatase/fructose-1,6-bisphosphatase; Reviewed
Probab=29.61 E-value=42 Score=26.97 Aligned_cols=25 Identities=12% Similarity=0.195 Sum_probs=23.2
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+.-|..++..||-+|-
T Consensus 83 ~WvIDPiDGT~nfv~g~p~~~vsia 107 (263)
T PRK12676 83 TVVLDPLDGTYNAINGIPFYAISIA 107 (263)
T ss_pred EEEEeccCCchHHhcCCCceEEEEE
Confidence 4889999999999999999998886
No 31
>COG0483 SuhB Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family [Carbohydrate transport and metabolism]
Probab=29.17 E-value=21 Score=29.05 Aligned_cols=25 Identities=16% Similarity=0.230 Sum_probs=23.5
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
.|.++|..|+.-|.+++.-||-+|-
T Consensus 81 ~wVIDPIDGT~NFv~G~P~favSIa 105 (260)
T COG0483 81 VWVIDPIDGTTNFVRGIPFFAVSIA 105 (260)
T ss_pred EEEEcCCCCcHHHHcCCCcceEEEE
Confidence 5889999999999999999999886
No 32
>PF13413 HTH_25: Helix-turn-helix domain; PDB: 2WUS_R 3FYM_A.
Probab=29.12 E-value=59 Score=21.02 Aligned_cols=19 Identities=32% Similarity=0.511 Sum_probs=13.5
Q ss_pred hhHHHHHHHhhcCCCHHHH
Q psy2610 65 IDDFARLYSAKLGIREDIL 83 (133)
Q Consensus 65 l~~FA~~Y~~K~gi~~~~L 83 (133)
++.|.+.|++.+|++++.+
T Consensus 44 ~rg~lr~Ya~~Lgld~~~l 62 (62)
T PF13413_consen 44 ARGYLRKYARFLGLDPDEL 62 (62)
T ss_dssp HHHHHHHHHHHTT--HHHH
T ss_pred HHHHHHHHHHHhCcCcccC
Confidence 4778888999899998754
No 33
>cd01641 Bacterial_IMPase_like_1 Predominantly bacterial family of Mg++ dependend phosphatases, related to inositol monophosphatases. These enzymes may dephosphorylate fructose-1,6-bisphosphate, inositol monophospate, 3'-phosphoadenosine-5'-phosphate, or similar substrates.
Probab=28.74 E-value=49 Score=26.24 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=23.6
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
.-|.++|..|+--|..++..||.+|-
T Consensus 73 ~~WviDPIDGT~nf~~g~p~~~vsia 98 (248)
T cd01641 73 YVWVLDPIDGTKSFIRGLPVWGTLIA 98 (248)
T ss_pred cEEEEecCcCchhHhcCCCceEEEEE
Confidence 35889999999999999999998886
No 34
>cd07013 S14_ClpP Caseinolytic protease (ClpP) is an ATP-dependent, highly conserved serine protease. Clp protease (caseinolytic protease; ClpP; Peptidase S14) is a highly conserved serine protease present throughout in bacteria and eukaryota, but seems to be absent in archaea, mollicutes and some fungi. Clp proteases are involved in a number of cellular processes such as degradation of misfolded proteins, regulation of short-lived proteins and housekeeping removal of dysfunctional proteins. Additionally, they are implicated in the control of cell growth, targeting DNA-binding protein from starved cells. ClpP has also been linked to the tight regulation of virulence genes in the pathogens Listeria monocytogenes and Salmonella typhimurium. This enzyme belong to the family of ATP-dependent proteases; the functional Clp protease is comprised of two components: a proteolytic component and one of several regulatory ATPase components, both of which are required for effective levels of proteas
Probab=27.85 E-value=57 Score=24.60 Aligned_cols=31 Identities=29% Similarity=0.441 Sum_probs=25.5
Q ss_pred hHHHHHHHhhcCCCHHHHHHhhhcccceecC
Q psy2610 66 DDFARLYSAKLGIREDILRKTLWGDYYLNAK 96 (133)
Q Consensus 66 ~~FA~~Y~~K~gi~~~~L~k~LWGD~Yyd~k 96 (133)
.+|.++|+++.|.+.+++.+.|=++.|++++
T Consensus 121 ~~~~~~~a~~tg~~~~~i~~~~~~~~~~sa~ 151 (162)
T cd07013 121 GNLVSAYAHKTGQSEEELHADLERDTWLSAR 151 (162)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHcCCccccHH
Confidence 6788899999999999998887777777653
No 35
>PRK07080 hypothetical protein; Validated
Probab=26.25 E-value=1.2e+02 Score=26.21 Aligned_cols=46 Identities=22% Similarity=0.418 Sum_probs=36.5
Q ss_pred CeeEecCCCceEeeecccceeeehhHHHHHHHhhcCCC----HHHHHHhhhcc
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIR----EDILRKTLWGD 90 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~~K~gi~----~~~L~k~LWGD 90 (133)
.+-+.-+.|.|+.+++ -||-|+-.|--.....|.+ ++...++|||+
T Consensus 268 ~f~I~~~~g~~ahTgC---vGFGlER~a~All~~hG~d~~~WP~~Vr~~l~~~ 317 (317)
T PRK07080 268 TWGIRTADGAVAHTGC---VGFGLERLALALFRHHGLDPAAWPAAVRDVLWGT 317 (317)
T ss_pred ccCcccCCCCEeEEee---eecCHHHHHHHHHHHhCCChhhccHHHHHHhcCC
Confidence 4556778899988875 4789998888777778877 56889999985
No 36
>cd01515 Arch_FBPase_1 Archaeal fructose-1,6-bisphosphatase and related enzymes of inositol monophosphatase family (FBPase class IV). These are Mg++ dependent phosphatases. Members in this family may have both fructose-1,6-bisphosphatase and inositol-monophosphatase activity. In hyperthermophilic archaea, inositol monophosphatase is thought to play a role in the biosynthesis of di-myo-inositol-1,1'-phosphate, an osmolyte unique to hyperthermophiles.
Probab=25.60 E-value=31 Score=27.64 Aligned_cols=25 Identities=8% Similarity=0.170 Sum_probs=23.1
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+--|..++..||-+|-
T Consensus 78 ~WvIDPIDGT~nfv~g~p~~~isia 102 (257)
T cd01515 78 TVVLDPLDGTYNAINGIPFYSVSVA 102 (257)
T ss_pred EEEEeCcCChhHHhcCCCceEEEEE
Confidence 5889999999999999999998875
No 37
>PF15065 NCU-G1: Lysosomal transcription factor, NCU-G1
Probab=25.07 E-value=99 Score=26.97 Aligned_cols=46 Identities=26% Similarity=0.470 Sum_probs=32.7
Q ss_pred CCCceeEEecCCCCCCCCCCCceeecccCccccCCCCCeeEecCCCceEeeecc
Q psy2610 5 HNPNLTLVLRPGPQSTSSPSDTVYTDWGTGLEDADDSDLYFSPDRGNVVFASAF 58 (133)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~fsP~~GNV~FaSal 58 (133)
+.|-+-|+. +..+...+..+|+.-+..+..+.+.|.|.. |.|++|+
T Consensus 23 g~Ptvll~~------T~~~~s~l~VnW~~lls~~~~~ai~v~p~~--v~ys~A~ 68 (350)
T PF15065_consen 23 GAPTVLLAH------TNSPSSALNVNWSKLLSPNPSGAITVEPKP--VQYSSAL 68 (350)
T ss_pred CCCEEEEEE------cCCCcccEEeeHHHhcCCCCCCCEEEccCC--ceEEEee
Confidence 345555555 333333478899986666677889999988 9999886
No 38
>KOG1785|consensus
Probab=24.61 E-value=33 Score=31.26 Aligned_cols=57 Identities=30% Similarity=0.578 Sum_probs=34.5
Q ss_pred CCCCCCCceeEEecCCCCCCCCCCCceeeccc-------Cccc-----cCCCCCeeEecCCCceEeeeccccee
Q psy2610 1 NGRNHNPNLTLVLRPGPQSTSSPSDTVYTDWG-------TGLE-----DADDSDLYFSPDRGNVVFASAFDGWG 62 (133)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-------~~~~-----~~~~~~~~fsP~~GNV~FaSal~GW~ 62 (133)
+||+|||+||-..++.++--. .|++++- |+++ .+.+.++.+.|- |...-+|++-.|-
T Consensus 332 dGr~~npdLt~l~~~~p~d~i----~VtqEQyeLYceMgsTFeLCKICaendKdvkIEPC-GHLlCt~CLa~WQ 400 (563)
T KOG1785|consen 332 DGRDQNPDLTGLCQPPPQDRI----KVTQEQYELYCEMGSTFELCKICAENDKDVKIEPC-GHLLCTSCLAAWQ 400 (563)
T ss_pred CCccCCCChhhccCCCcccce----eeeHHHHHHHHHccchHHHHHHhhccCCCcccccc-cchHHHHHHHhhc
Confidence 699999999987766655332 2333322 2221 234556777773 6666777777775
No 39
>PF00459 Inositol_P: Inositol monophosphatase family; InterPro: IPR000760 It has been shown that several proteins share two sequence motifs []. Two of these proteins, vertebrate and plant inositol monophosphatase (3.1.3.25 from EC), and vertebrate inositol polyphosphate 1-phosphatase (3.1.3.57 from EC), are enzymes of the inositol phosphate second messenger signalling pathway, and share similar enzyme activity. Both enzymes exhibit an absolute requirement for metal ions (Mg2+ is preferred), and their amino acid sequences contain a number of conserved motifs, which are also shared by several other proteins related to MPTASE (including products of fungal QaX and qutG, bacterial suhB and cysQ, and yeast hal2) []. The function of the other proteins is not yet clear, but it is suggested that they may act by enhancing the synthesis or degradation of phosphorylated messenger molecules []. Structural analysis of these proteins has revealed a common core of 155 residues, which includes residues essential for metal binding and catalysis. An interesting property of the enzymes of this family is their sensitivity to Li+. The targets and mechanism of action of Li+ are unknown, but overactive inositol phosphate signalling may account for symptoms of manic depression [].; GO: 0004437 inositol or phosphatidylinositol phosphatase activity; PDB: 1IMF_A 1IMA_A 1IMB_A 1IMD_A 1IMC_A 1IME_A 1AWB_A 2HHM_B 2QFL_A 1INP_A ....
Probab=24.19 E-value=17 Score=28.99 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=22.9
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
--|.++|..|+--|..++..|+.+|-
T Consensus 85 ~~wviDPIDGT~nf~~g~p~~~i~ia 110 (270)
T PF00459_consen 85 YTWVIDPIDGTRNFVRGLPEFAISIA 110 (270)
T ss_dssp EEEEEEEEETHHHHHHTSSG-EEEEE
T ss_pred eEEEecccccchhhhhhhhHHHHHHH
Confidence 46889999999999999999999886
No 40
>PHA02107 hypothetical protein
Probab=23.84 E-value=61 Score=26.18 Aligned_cols=50 Identities=20% Similarity=0.410 Sum_probs=28.0
Q ss_pred CCCCCCCceeEEecCCCCCCCC---CCCceeeccc--CccccCCCCCeeEecCCC
Q psy2610 1 NGRNHNPNLTLVLRPGPQSTSS---PSDTVYTDWG--TGLEDADDSDLYFSPDRG 50 (133)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~--~~~~~~~~~~~~fsP~~G 50 (133)
|||||--...+.|.++.-..+. .+-++-.+.. .-.++++.+.++|+|+.|
T Consensus 115 NG~N~iV~FSi~L~~~~~apVK~V~~~~~~V~~~~~~EP~~~~~~~~IFF~~~~~ 169 (216)
T PHA02107 115 NGSNHVVTFSVDLPNGDKAPVKNVETKTEVVSTVDYTEPAKEPDGQNIFFAPETM 169 (216)
T ss_pred CCccceEEEEEEcCCccccCccchhhccchhhhccccCCccccccceeeecHHHH
Confidence 7999988888887765443322 2222212211 223344566788888765
No 41
>PRK10130 transcriptional regulator EutR; Provisional
Probab=23.72 E-value=65 Score=27.52 Aligned_cols=28 Identities=25% Similarity=0.521 Sum_probs=20.7
Q ss_pred eecccceee-ehhHHHHHHHhhcCCCHHH
Q psy2610 55 ASAFDGWGF-TIDDFARLYSAKLGIREDI 82 (133)
Q Consensus 55 aSal~GW~F-tl~~FA~~Y~~K~gi~~~~ 82 (133)
+..=.-||| ++..|++.|.+.||+.|..
T Consensus 312 ~eIA~~~GF~~~s~Fs~~fk~~fG~tPs~ 340 (350)
T PRK10130 312 KDAAMQWGFWHLGQFATDYQQLFAEKPSL 340 (350)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHCcCcHH
Confidence 333445666 6899999999999987654
No 42
>PRK10219 DNA-binding transcriptional regulator SoxS; Provisional
Probab=22.75 E-value=86 Score=21.34 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=20.0
Q ss_pred ehhHHHHHHHhhcCCCHHHHHHhh
Q psy2610 64 TIDDFARLYSAKLGIREDILRKTL 87 (133)
Q Consensus 64 tl~~FA~~Y~~K~gi~~~~L~k~L 87 (133)
+...|.+.|.+.+|+.|.++.+++
T Consensus 84 ~~s~f~~~Fk~~~G~tP~~~r~~~ 107 (107)
T PRK10219 84 SQQTFSRVFRRQFDRTPSDYRHRL 107 (107)
T ss_pred CHHHHHHHHHHHHCcCHHHHHhcC
Confidence 467899999999999999887653
No 43
>PRK10572 DNA-binding transcriptional regulator AraC; Provisional
Probab=22.70 E-value=81 Score=25.06 Aligned_cols=28 Identities=18% Similarity=0.283 Sum_probs=21.3
Q ss_pred ceeee-hhHHHHHHHhhcCCCHHHHHHhh
Q psy2610 60 GWGFT-IDDFARLYSAKLGIREDILRKTL 87 (133)
Q Consensus 60 GW~Ft-l~~FA~~Y~~K~gi~~~~L~k~L 87 (133)
.+||+ ...|.+.+.+.+|++|.++.++.
T Consensus 257 ~~GF~d~s~Fsr~FKk~~G~SP~~yR~~~ 285 (290)
T PRK10572 257 NVGYDDQLYFSRVFKKCTGASPSEFRARC 285 (290)
T ss_pred HhCCCCHHHHHHHHHHHHCcCHHHHHHHh
Confidence 34455 78889999888899888877654
No 44
>PF12833 HTH_18: Helix-turn-helix domain; PDB: 2K9S_A 3LSG_C 3OIO_A 1D5Y_B 3GBG_A 3OOU_A 1BL0_A 1XS9_A 3MN2_B 3MKL_B ....
Probab=22.66 E-value=1e+02 Score=19.67 Aligned_cols=23 Identities=22% Similarity=0.443 Sum_probs=18.3
Q ss_pred ehhHHHHHHHhhcCCCHHHHHHh
Q psy2610 64 TIDDFARLYSAKLGIREDILRKT 86 (133)
Q Consensus 64 tl~~FA~~Y~~K~gi~~~~L~k~ 86 (133)
+...|.+.+.+.+|++|.++.++
T Consensus 59 ~~~~f~~~fk~~~g~tP~~~r~r 81 (81)
T PF12833_consen 59 SQSHFSRAFKRYFGMTPSEYRKR 81 (81)
T ss_dssp SHHHHHHHHHHHHSS-HHHHHHH
T ss_pred CHHHHHHHHHHHHCcCHHHHHcc
Confidence 36889999999999999887763
No 45
>PF00574 CLP_protease: Clp protease; InterPro: IPR001907 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases belong to the MEROPS peptidase family S14 (ClpP endopeptidase family, clan SK). ClpP is an ATP-dependent protease that cleaves a number of proteins, such as casein and albumin []. It exists as a heterodimer of ATP-binding regulatory A and catalytic P subunits, both of which are required for effective levels of protease activity in the presence of ATP [], although the P subunit alone does possess some catalytic activity. This family of sequences represent the P subunit. Proteases highly similar to ClpP have been found to be encoded in the genome of bacteria, metazoa, some viruses and in the chloroplast of plants. A number of the proteins in this family are classified as non-peptidase homologues as they have been found experimentally to be without peptidase activity, or lack amino acid residues that are believed to be essential for catalytic activity. ; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2ZL3_L 2ZL0_F 2ZL2_M 2ZL4_C 1TG6_D 2F6I_D 3V5I_b 3V5E_M 3QWD_D 2DEO_A ....
Probab=21.63 E-value=81 Score=23.70 Aligned_cols=31 Identities=19% Similarity=0.482 Sum_probs=23.5
Q ss_pred hHHHHHHHhhcCCCHHHHHHhhhcccceecC
Q psy2610 66 DDFARLYSAKLGIREDILRKTLWGDYYLNAK 96 (133)
Q Consensus 66 ~~FA~~Y~~K~gi~~~~L~k~LWGD~Yyd~k 96 (133)
+.++++|+++.|++++.+.+.+=.|.|+.++
T Consensus 137 ~~~~~~~~~~tg~~~~~i~~~~~~~~~l~a~ 167 (182)
T PF00574_consen 137 ERIANIYAERTGLSKEEIEELMDRDTWLSAE 167 (182)
T ss_dssp HHHHHHHHHHHTS-HHHHHHHCSSTEEEEHH
T ss_pred HHHHHHHHHHhCCcHHHHHHHHhCCccccHH
Confidence 3457888888899999998887777777664
No 46
>PF12244 DUF3606: Protein of unknown function (DUF3606); InterPro: IPR022037 This family of proteins is found in bacteria. Proteins in this family are typically between 58 and 85 amino acids in length. There is a single completely conserved residue G that may be functionally important.
Probab=20.91 E-value=91 Score=19.99 Aligned_cols=18 Identities=28% Similarity=0.748 Sum_probs=14.4
Q ss_pred HHHHhhcCCCHHHHHHhh
Q psy2610 70 RLYSAKLGIREDILRKTL 87 (133)
Q Consensus 70 ~~Y~~K~gi~~~~L~k~L 87 (133)
+.++++||++++.|....
T Consensus 24 ~ywa~~~gvt~~~L~~AV 41 (57)
T PF12244_consen 24 RYWAKRFGVTEEQLREAV 41 (57)
T ss_pred HHHHHHHCcCHHHHHHHH
Confidence 457888999999887764
Done!