Query psy2610
Match_columns 133
No_of_seqs 121 out of 680
Neff 4.9
Searched_HMMs 29240
Date Fri Aug 16 20:37:46 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2610.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2610hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1n0u_A EF-2, elongation factor 99.6 5.6E-16 1.9E-20 141.2 9.8 90 41-130 198-290 (842)
2 2jzy_A Transcriptional regulat 38.3 50 0.0017 22.0 4.5 50 41-92 9-62 (112)
3 3rjp_A COVR; winged helix-turn 35.4 55 0.0019 20.8 4.2 50 41-92 3-56 (96)
4 1gxq_A PHOB, phosphate regulon 34.6 53 0.0018 21.4 4.1 50 41-92 12-65 (106)
5 2pmu_A Response regulator PHOP 33.9 64 0.0022 21.2 4.5 50 41-92 15-68 (110)
6 2hqn_A Putative transcriptiona 32.5 61 0.0021 21.1 4.2 50 41-92 10-63 (109)
7 2k4j_A Putative transcriptiona 30.6 60 0.0021 21.8 3.9 50 41-92 22-75 (115)
8 2hwv_A DNA-binding response re 30.5 66 0.0022 21.8 4.2 50 41-92 24-77 (121)
9 3oou_A LIN2118 protein; protei 30.4 32 0.0011 22.3 2.4 26 61-86 80-106 (108)
10 3gbg_A TCP pilus virulence reg 29.2 31 0.0011 25.7 2.5 28 60-87 242-270 (276)
11 1opc_A OMPR, OMPRC; transcript 28.5 62 0.0021 21.1 3.6 50 41-92 12-65 (110)
12 2zxj_A Transcriptional regulat 28.0 67 0.0023 22.1 3.9 51 41-93 17-71 (120)
13 3lv0_A Extragenic suppressor p 27.8 20 0.0007 27.8 1.2 26 41-66 85-110 (267)
14 3zq7_A KDP operon transcriptio 26.5 73 0.0025 20.4 3.7 50 41-92 9-62 (102)
15 3mn2_A Probable ARAC family tr 26.4 41 0.0014 21.7 2.4 26 61-86 79-105 (108)
16 3lsg_A Two-component response 25.2 32 0.0011 22.1 1.6 24 61-84 78-102 (103)
17 2p3n_A Inositol-1-monophosphat 21.5 21 0.00071 27.5 0.1 25 42-66 75-99 (256)
18 2jo6_A Nitrite reductase [NAD( 21.3 44 0.0015 22.1 1.8 14 53-66 70-83 (113)
19 2z9m_A Response regulator YYCF 20.6 89 0.0031 20.8 3.3 50 41-92 17-70 (120)
No 1
>1n0u_A EF-2, elongation factor 2; G-protein, CIS-proline, translation; HET: SO1; 2.12A {Saccharomyces cerevisiae} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1n0v_C 1s1h_T 2e1r_A* 2npf_A* 2p8w_T* 3dny_T 3b82_A* 1zm2_A* 1zm3_A* 1zm4_A* 1zm9_A* 2p8x_T* 2p8y_T* 2p8z_T* 2zit_A* 1u2r_A* 3b78_A* 3b8h_A*
Probab=99.63 E-value=5.6e-16 Score=141.19 Aligned_cols=90 Identities=31% Similarity=0.655 Sum_probs=80.1
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHHHHhhcCCCHHHHHHhhhcccceecCCCcEecCC-CcCC--CCchhhHHh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGDYYLNAKAKRILKGA-QEKA--KAPLFVEFV 117 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y~~K~gi~~~~L~k~LWGD~Yyd~ktKk~~~~~-~~~~--~kr~FVqfI 117 (133)
+++.++|..++|.|+||++||+|++.+||++|+++|+++.+.|.+++|||+||+++++++...+ +..+ .+|+|++++
T Consensus 198 ~~~~~~p~~~~v~~~sa~~g~~~~~~~f~~~y~~~~~~~~~~l~~~~~~d~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~ 277 (842)
T 1n0u_A 198 GDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPKTKKWTNKDTDAEGKPLERAFNMFI 277 (842)
T ss_dssp CCCCCCGGGTCEEEEETTTTEEEEHHHHHHHHHTTTTSCHHHHHHHTSSSCEEETTTTEEESCSBCTTCCBCCBHHHHHT
T ss_pred CceeeceEEeeeEEeecccccccchhhhhhhcchhcCCCHHHHHHHHhccccccCCCCeEEEecCCchhhhhhHHHHHHH
Confidence 4567899999999999999999999999999999999999999999999999999888888754 2222 268999999
Q ss_pred HHHHHHHHHHHhc
Q psy2610 118 LKNVVTLYETVAV 130 (133)
Q Consensus 118 LePI~kIy~~v~~ 130 (133)
++|+|+|+++++.
T Consensus 278 ~~~~~~l~e~~~~ 290 (842)
T 1n0u_A 278 LDPIFRLFTAIMN 290 (842)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999875
No 2
>2jzy_A Transcriptional regulatory protein PCOR; two-component-system response regulator, effector domain, DNA-binding, phosphoprotein, plasmid; NMR {Klebsiella pneumoniae}
Probab=38.27 E-value=50 Score=21.98 Aligned_cols=50 Identities=14% Similarity=0.316 Sum_probs=33.8
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHH--HHhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~g--i~~~~L~k~LWGD~Y 92 (133)
+++.|+|....|.... .-...|-..|+=+ .+..-| ++.+.|.+.+||+.+
T Consensus 9 g~~~~d~~~~~l~~~g--~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vW~~~~ 62 (112)
T 2jzy_A 9 ADMTVDMVRRTVIRSG--KKIHLTGKEYVLLELLLQRTGEVLPRSLISSLVWNMNF 62 (112)
T ss_dssp TTEEECTTTCCEEETT--EECCCCHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCCS
T ss_pred CCEEEECCCCEEEECC--EEEecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCC
Confidence 3577888888886542 2244677776654 222333 789999999999865
No 3
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=35.36 E-value=55 Score=20.79 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=32.3
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHH--HHhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~g--i~~~~L~k~LWGD~Y 92 (133)
+++.|+|....|.... .-...|-..|.=+ .+..-| ++.+.|.+.+||+.+
T Consensus 3 g~~~~d~~~~~l~~~~--~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vw~~~~ 56 (96)
T 3rjp_A 3 RDLVLNPQNRSVNRGD--DEISLTKREYDLLNILMTNMNRVMTREELLSNVWKYDE 56 (96)
T ss_dssp CSSEEETTTTEEEETT--EEEECCHHHHHHHHHHHHTTTSCBCHHHHHHHHSSSCS
T ss_pred CCEEEECCCCEEEECC--EEEEcCHHHHHHHHHHHhCCCeeEcHHHHHHHHcCCCC
Confidence 3567888888875532 2244666666554 223334 789999999999643
No 4
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=34.56 E-value=53 Score=21.35 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=33.5
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHHH--HhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARLY--SAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y--~~K~g--i~~~~L~k~LWGD~Y 92 (133)
+++.|++....|.... .-...|-..|.=+. +..-| ++.+.|.+.+||+.+
T Consensus 12 g~~~~d~~~~~l~~~g--~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~ 65 (106)
T 1gxq_A 12 QGLSLDPTSHRVMAGE--EPLEMGPTEFKLLHFFMTHPERVYSREQLLNHVWGTNV 65 (106)
T ss_dssp TTEEEETTTTEEEETT--EECCCCHHHHHHHHHHHHSCSSEECHHHHHHHHTCSSS
T ss_pred CCEEEECCCCEEEECC--EEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCCC
Confidence 3577888888886532 22446777776542 22223 778999999999864
No 5
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=33.91 E-value=64 Score=21.23 Aligned_cols=50 Identities=14% Similarity=0.263 Sum_probs=33.9
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHHH--HhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARLY--SAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y--~~K~g--i~~~~L~k~LWGD~Y 92 (133)
.++.|+|....|.... .-...|-..|.-+. +..-| ++.+.|.+.+||+.+
T Consensus 15 g~~~~d~~~~~l~~~g--~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~ 68 (110)
T 2pmu_A 15 ADIELDEETHEVWKAG--QPVSLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDF 68 (110)
T ss_dssp TTEEEETTTCCEEETT--EEECCCHHHHHHHHHHHHTTTSCBCHHHHHHHHSCTTC
T ss_pred CCEEEECCCCEEEECC--EEEecCHHHHHHHHHHHHCCCEEEcHHHHHHHHcCCCC
Confidence 3577888888886543 22456777776542 22333 788999999999864
No 6
>2hqn_A Putative transcriptional regulator; phosporylation-independent response regulator, signaling Pro; NMR {Helicobacter pylori}
Probab=32.53 E-value=61 Score=21.10 Aligned_cols=50 Identities=18% Similarity=0.363 Sum_probs=32.5
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHH--HHhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~g--i~~~~L~k~LWGD~Y 92 (133)
.++.|+|....|.... .-..+|-..|.=+ .+..-| ++.+.|.+.+||+.+
T Consensus 10 g~~~~d~~~~~l~~~g--~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~ 63 (109)
T 2hqn_A 10 GDLTISPDEEKIIYKG--REVEVKGKPFEVLTHLARHRDQIVSKEQLLDAIWEEPE 63 (109)
T ss_dssp TTEEEETTTTEEEETT--EEEECCCSTHHHHHHHHHHTCSEEEHHHHHHHHCCSCG
T ss_pred CCEEEECCCCEEEECC--EEEEcCHHHHHHHHHHHHCCCeeEcHHHHHHHHcCCCC
Confidence 3577888888776532 2244566666544 233333 778999999999854
No 7
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=30.55 E-value=60 Score=21.80 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=33.9
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHH--HHhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~g--i~~~~L~k~LWGD~Y 92 (133)
.++.|+|....|..... -...|-..|.-+ .+..-| ++.+.|.+.+||+.+
T Consensus 22 g~l~ld~~~~~l~~~g~--~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~ 75 (115)
T 2k4j_A 22 NIFRVDKDSREVYMHEK--KLDLTRAEYEILSLLISKKGYVFSRESIAIESESINP 75 (115)
T ss_dssp TTEEEETTTTEEEETTE--EECSCHHHHHHHHHHHHHCCCEECHHHHHHHTCCSSC
T ss_pred CCEEEECCCCEEEECCE--EEecCHHHHHHHHHHHHcCCcEEcHHHHHHHHcCCCC
Confidence 46788998888865432 245677776654 223334 788999999999764
No 8
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=30.49 E-value=66 Score=21.81 Aligned_cols=50 Identities=30% Similarity=0.515 Sum_probs=34.1
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHHH--HhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARLY--SAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~Y--~~K~g--i~~~~L~k~LWGD~Y 92 (133)
+++.|+|....|.... .-...|-..|.=+. +..-| ++.+.|.+.+||+.+
T Consensus 24 g~~~ld~~~~~l~~~g--~~i~Lt~~E~~LL~~L~~~~g~vvsre~L~~~vW~~~~ 77 (121)
T 2hwv_A 24 GDLTIHPDAYMVSKRG--EKIELTHREFELLYYLAKHIGQVMTREHLLQTVWGYDY 77 (121)
T ss_dssp TTEEECSSSSEEEETT--EEEECCHHHHHHHHHHHHTTTCCBCHHHHHHHHTCGGG
T ss_pred CCEEEECCCCEEEECC--EEEECCHHHHHHHHHHHHcCCeEEcHHHHHHHHcCCCC
Confidence 4678888888886642 22456777776542 22223 788999999999864
No 9
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=30.45 E-value=32 Score=22.34 Aligned_cols=26 Identities=23% Similarity=0.387 Sum_probs=21.3
Q ss_pred eee-ehhHHHHHHHhhcCCCHHHHHHh
Q psy2610 61 WGF-TIDDFARLYSAKLGIREDILRKT 86 (133)
Q Consensus 61 W~F-tl~~FA~~Y~~K~gi~~~~L~k~ 86 (133)
+|| +...|.+.+.+.+|+.|.++.+.
T Consensus 80 ~Gf~~~s~F~r~Fk~~~G~tP~~yR~~ 106 (108)
T 3oou_A 80 SGYTDMAYFYRQFKKHTGETPNRYRKI 106 (108)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHHHHHH
T ss_pred cCCCChHHHHHHHHHHhCcCHHHHHHH
Confidence 345 77899999999999999887764
No 10
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=29.19 E-value=31 Score=25.72 Aligned_cols=28 Identities=14% Similarity=0.342 Sum_probs=23.0
Q ss_pred ceee-ehhHHHHHHHhhcCCCHHHHHHhh
Q psy2610 60 GWGF-TIDDFARLYSAKLGIREDILRKTL 87 (133)
Q Consensus 60 GW~F-tl~~FA~~Y~~K~gi~~~~L~k~L 87 (133)
-+|| +...|.+.+.+.+|++|.++.+.+
T Consensus 242 ~~Gf~~~s~F~r~Fkk~~G~tP~~yR~~~ 270 (276)
T 3gbg_A 242 QSGFASVSYFSTVFKSTMNVAPSEYLFML 270 (276)
T ss_dssp HTTCSCHHHHHHHHHHHHSSCHHHHHHHT
T ss_pred HhCCCCHHHHHHHHHHHHCcCHHHHHHHH
Confidence 3456 678999999999999999988764
No 11
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=28.50 E-value=62 Score=21.12 Aligned_cols=50 Identities=16% Similarity=0.195 Sum_probs=33.1
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHH--HHhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~g--i~~~~L~k~LWGD~Y 92 (133)
+++.|++....|.... .-...|-..|.=+ .+..-| ++.+.|.+.+||+.+
T Consensus 12 g~~~ld~~~~~l~~~~--~~i~Lt~~E~~lL~~L~~~~g~~vsr~~L~~~vW~~~~ 65 (110)
T 1opc_A 12 GKFKLNLGTREMFRED--EPMPLTSGEFAVLKALVSHPREPLSRDKLMNLARGREY 65 (110)
T ss_dssp TTEEEETTTTEEEETT--EEECCCHHHHHHHHHHHHSTTCCEEHHHHHHHHCCSSS
T ss_pred CCEEEECCCCEEEECC--EEEEcCHHHHHHHHHHHHcCCceEcHHHHHHHHcCCCC
Confidence 3577888888776532 2245676766654 222223 778999999999865
No 12
>2zxj_A Transcriptional regulatory protein WALR; two-component system, YYCG, response regulator, helix-turn-H motif, DNA-binding domain; 1.87A {Staphylococcus aureus} PDB: 2d1v_A
Probab=28.02 E-value=67 Score=22.14 Aligned_cols=51 Identities=24% Similarity=0.468 Sum_probs=34.7
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHH--HHhhcC--CCHHHHHHhhhcccce
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKLG--IREDILRKTLWGDYYL 93 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~g--i~~~~L~k~LWGD~Yy 93 (133)
+++.|+|....|...- .--..|-..|.=+ .+..-| ++.+.|.+.+||+.+.
T Consensus 17 g~l~ld~~~~~v~~~g--~~i~Lt~~E~~lL~~L~~~~g~vvsre~L~~~vWg~~~~ 71 (120)
T 2zxj_A 17 KDIVIYPDAYSIKKRG--EDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDYF 71 (120)
T ss_dssp TTEEEEGGGTEEEETT--EEECCCHHHHHHHHHHHTTTTCCBCHHHHHHHHHCTTCC
T ss_pred cCEEEECCCCEEEECC--EEEEcCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCC
Confidence 4578899888876532 2245677777665 333334 6789999999997654
No 13
>3lv0_A Extragenic suppressor protein SUHB; niaid, seattle structural genomics center for infectious disease, ssgcid, CAT scratch disease; 1.85A {Bartonella henselae} SCOP: e.7.1.0 PDB: 3luz_A
Probab=27.78 E-value=20 Score=27.82 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.3
Q ss_pred CCeeEecCCCceEeeecccceeeehh
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
--|.++|..|+.-|..++..||-+|-
T Consensus 85 ~~WiIDPIDGT~nF~~g~p~f~vsIA 110 (267)
T 3lv0_A 85 HRFIVDPLDGTTNFLHGIPFFAVSIA 110 (267)
T ss_dssp EEEEEEEEECHHHHHTTCSCCEEEEE
T ss_pred CEEEEecCCChHHHHhCCCceEEEEE
Confidence 35889999999999999999998875
No 14
>3zq7_A KDP operon transcriptional regulatory protein KDP; response regulator; 2.52A {Escherichia coli}
Probab=26.45 E-value=73 Score=20.39 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=32.4
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHH--HHhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~g--i~~~~L~k~LWGD~Y 92 (133)
+++.|+|....|.... .-...|-..|.=+ .+..-| ++.+.|.+.+||+.+
T Consensus 9 g~~~~d~~~~~v~~~~--~~i~Lt~~e~~lL~~L~~~~g~~vsr~~L~~~vw~~~~ 62 (102)
T 3zq7_A 9 SDVTVDLAARVIHRGE--EEVHLTPIEFRLLAVLLNNAGKVLTQRQLLNQVWGPNA 62 (102)
T ss_dssp SSCEEETTTTEEEETT--EEECCCHHHHHHHHHHHHTTTCEEEHHHHHHHHTSSSC
T ss_pred CCEEEECCCCEEEECC--EEEEcCHHHHHHHHHHHHCCCeeECHHHHHHHhcCCCC
Confidence 4577888888875432 2344666666543 222334 678999999999654
No 15
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=26.41 E-value=41 Score=21.69 Aligned_cols=26 Identities=27% Similarity=0.464 Sum_probs=21.3
Q ss_pred eee-ehhHHHHHHHhhcCCCHHHHHHh
Q psy2610 61 WGF-TIDDFARLYSAKLGIREDILRKT 86 (133)
Q Consensus 61 W~F-tl~~FA~~Y~~K~gi~~~~L~k~ 86 (133)
+|| +...|.+.+.+.+|+.|..+.++
T Consensus 79 ~Gf~~~s~F~r~Fk~~~G~tP~~yr~~ 105 (108)
T 3mn2_A 79 CGFSNLGHFARDYRDMFGEKPSETLQR 105 (108)
T ss_dssp TTCCCHHHHHHHHHHHHSSCHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHCcChHHHHHh
Confidence 344 57889999999999999888764
No 16
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=25.22 E-value=32 Score=22.09 Aligned_cols=24 Identities=21% Similarity=0.358 Sum_probs=19.3
Q ss_pred eee-ehhHHHHHHHhhcCCCHHHHH
Q psy2610 61 WGF-TIDDFARLYSAKLGIREDILR 84 (133)
Q Consensus 61 W~F-tl~~FA~~Y~~K~gi~~~~L~ 84 (133)
+|| +...|.+.+.+.+|+.|.++.
T Consensus 78 ~Gf~~~s~F~r~Fk~~~G~tP~~yR 102 (103)
T 3lsg_A 78 VGFEDVNYFITKFKKYYQITPKQYR 102 (103)
T ss_dssp TTCSCHHHHHHHHHHHHSSCHHHHT
T ss_pred hCCCCHHHHHHHHHHHHCcCHHHHh
Confidence 345 778899999999999987754
No 17
>2p3n_A Inositol-1-monophosphatase; tetramer, hydrolase; 2.20A {Thermotoga maritima} PDB: 2p3v_A*
Probab=21.46 E-value=21 Score=27.49 Aligned_cols=25 Identities=12% Similarity=0.344 Sum_probs=22.8
Q ss_pred CeeEecCCCceEeeecccceeeehh
Q psy2610 42 DLYFSPDRGNVVFASAFDGWGFTID 66 (133)
Q Consensus 42 ~~~fsP~~GNV~FaSal~GW~Ftl~ 66 (133)
-|.++|..|+.-|..++..||.+|-
T Consensus 75 ~WiIDPIDGT~nF~~g~p~~~vsIa 99 (256)
T 2p3n_A 75 LWIIDPIDGTINFVHGLPNFSISLA 99 (256)
T ss_dssp EEEEEEEETHHHHHHTCSCCEEEEE
T ss_pred EEEEeCccCHHHHHhCCCCeEEEEE
Confidence 5889999999999999999998875
No 18
>2jo6_A Nitrite reductase [NAD(P)H] small subunit; all beta, ISP domain, rieske iron-sulfur protein, 3-layer sandwich, structural genomics, PSI-2; NMR {Escherichia coli} SCOP: b.33.1.3
Probab=21.25 E-value=44 Score=22.09 Aligned_cols=14 Identities=21% Similarity=0.245 Sum_probs=12.5
Q ss_pred Eeeecccceeeehh
Q psy2610 53 VFASAFDGWGFTID 66 (133)
Q Consensus 53 ~FaSal~GW~Ftl~ 66 (133)
.+.+..|||.|.++
T Consensus 70 ~i~CP~Hg~~Fd~~ 83 (113)
T 2jo6_A 70 WVASPLKKQRFRLS 83 (113)
T ss_dssp EEEETTTTEEEETT
T ss_pred EEECCCCCCEEeCC
Confidence 68899999999985
No 19
>2z9m_A Response regulator YYCF; two-component system, YYCG, helix-turn- helix motif, DNA-binding domain, phosphorylation, transcription; 1.87A {Staphylococcus aureus} PDB: 2zxj_A 2d1v_A
Probab=20.58 E-value=89 Score=20.81 Aligned_cols=50 Identities=24% Similarity=0.464 Sum_probs=32.8
Q ss_pred CCeeEecCCCceEeeecccceeeehhHHHHH--HHhhcC--CCHHHHHHhhhcccc
Q psy2610 41 SDLYFSPDRGNVVFASAFDGWGFTIDDFARL--YSAKLG--IREDILRKTLWGDYY 92 (133)
Q Consensus 41 ~~~~fsP~~GNV~FaSal~GW~Ftl~~FA~~--Y~~K~g--i~~~~L~k~LWGD~Y 92 (133)
.++.|++....|.... .-...|-..|.=+ .+..-| ++.+.|.+.+||+.+
T Consensus 17 g~~~ld~~~~~v~~~g--~~i~Lt~~E~~lL~~L~~~~g~vvsr~~L~~~vW~~~~ 70 (120)
T 2z9m_A 17 KDIVIYPDAYSIKKRG--EDIELTHREFELFHYLSKHMGQVMTREHLLQTVWGYDY 70 (120)
T ss_dssp TTEEEEGGGTEEEETT--EEECCCHHHHHHHHHHHTTTTCCEEHHHHHHHHHCTTC
T ss_pred CCEEEECCCCEEEECC--EEEeCCHHHHHHHHHHHHCCCceEcHHHHHHHHhCCCC
Confidence 4578899888886532 2345666766654 222223 678999999999543
Done!