RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2610
         (133 letters)



>d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal
           (G) domain {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 341

 Score =  101 bits (253), Expect = 2e-27
 Identities = 33/100 (33%), Positives = 45/100 (45%), Gaps = 3/100 (3%)

Query: 37  DADDSDLYFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGDYYLNAK 96
           D    D+   P RG V F S   GW FTI  FA  Y+ K G+ +  +   LWGD + N K
Sbjct: 192 DEVLGDVQVYPARGTVAFGSGLHGWAFTIRQFATRYAKKFGVDKAKMMDRLWGDSFFNPK 251

Query: 97  AKRILKGAQEKAKAPL---FVEFVLKNVVTLYETVAVRKK 133
            K+      +    PL   F  F+L  +  L+  +   KK
Sbjct: 252 TKKWTNKDTDAEGKPLERAFNMFILDPIFRLFTAIMNFKK 291


>d1bfga_ b.42.1.1 (A:) Basic FGF (FGF2) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 126

 Score = 27.9 bits (62), Expect = 0.22
 Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 1/62 (1%)

Query: 32 GTGLEDADDSDLYFSP-DRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGD 90
          G   +      L     +RG V            + +  RL ++K    E    + L  +
Sbjct: 24 GVREKSDPHIKLQLQAEERGVVSIKGVSANRYLAMKEDGRLLASKSVTDECFFFERLESN 83

Query: 91 YY 92
           Y
Sbjct: 84 NY 85


>d1q1ua_ b.42.1.1 (A:) Fibrobast growth factor homologous factor 1
          (FHF1b, FGF12b) {Human (Homo sapiens) [TaxId: 9606]}
          Length = 138

 Score = 26.3 bits (58), Expect = 0.77
 Identities = 11/62 (17%), Positives = 24/62 (38%), Gaps = 1/62 (1%)

Query: 32 GTGLEDADDSDLYF-SPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGD 90
          GT  E++D +           V            ++    LYS+ +   E   +++++ +
Sbjct: 28 GTKDENSDYTLFNLIPVGLRVVAIQGVKASLYVAMNGEGYLYSSDVFTPECKFKESVFEN 87

Query: 91 YY 92
          YY
Sbjct: 88 YY 89


>d1rg8a_ b.42.1.1 (A:) Acidic FGF (FGF1) {Human (Homo sapiens)
          [TaxId: 9606]}
          Length = 141

 Score = 25.9 bits (57), Expect = 1.3
 Identities = 15/65 (23%), Positives = 22/65 (33%), Gaps = 1/65 (1%)

Query: 29 TDWGTGLEDADDSDLYFSP-DRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTL 87
          T  GT         L  S    G V   S   G    +D    LY ++    E +  + L
Sbjct: 34 TVDGTRDRSDQHIQLQLSAESVGEVYIKSTETGQYLAMDTDGLLYGSQTPNEECLFLERL 93

Query: 88 WGDYY 92
            ++Y
Sbjct: 94 EENHY 98


>d1tz0a_ d.58.4.5 (A:) Hypothetical protein BC2969 {Bacillus cereus
           [TaxId: 1396]}
          Length = 108

 Score = 25.7 bits (56), Expect = 1.4
 Identities = 3/48 (6%), Positives = 12/48 (25%), Gaps = 2/48 (4%)

Query: 86  TLWGD--YYLNAKAKRILKGAQEKAKAPLFVEFVLKNVVTLYETVAVR 131
             W     + N +            +     + ++     +Y   + +
Sbjct: 57  IRWESEEAWKNWETSEEHLAGHRAGRGKPKPDHIINVDHAVYYVKSSK 104


>d1ijta_ b.42.1.1 (A:) Fibroblast growth factor 4 (FGF4) {Human
          (Homo sapiens) [TaxId: 9606]}
          Length = 128

 Score = 24.0 bits (52), Expect = 5.6
 Identities = 8/49 (16%), Positives = 16/49 (32%)

Query: 44 YFSPDRGNVVFASAFDGWGFTIDDFARLYSAKLGIREDILRKTLWGDYY 92
              +RG V        +   +    +LY +     E   ++ L  + Y
Sbjct: 40 LSPVERGVVSIFGVASRFFVAMSSKGKLYGSPFFTDECTFKEILLPNNY 88


>d1zswa2 d.32.1.10 (A:145-314) Hypothetical protein BC1024 {Bacillus
           cereus [TaxId: 1396]}
          Length = 170

 Score = 23.9 bits (51), Expect = 7.0
 Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 1/25 (4%)

Query: 43  LYFSPDRGNVVFASAFDGWGFTIDD 67
           LYF  +   ++F  A DG GFT+D 
Sbjct: 115 LYF-RESNGILFEIATDGPGFTVDG 138


>d3buxb3 d.93.1.1 (B:264-351) Cbl {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 88

 Score = 22.9 bits (49), Expect = 9.2
 Identities = 7/10 (70%), Positives = 9/10 (90%)

Query: 1  NGRNHNPNLT 10
          +GRN NP+LT
Sbjct: 78 DGRNQNPDLT 87


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.318    0.136    0.412 

Gapped
Lambda     K      H
   0.267   0.0439    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 516,815
Number of extensions: 23636
Number of successful extensions: 58
Number of sequences better than 10.0: 1
Number of HSP's gapped: 57
Number of HSP's successfully gapped: 13
Length of query: 133
Length of database: 2,407,596
Length adjustment: 76
Effective length of query: 57
Effective length of database: 1,364,116
Effective search space: 77754612
Effective search space used: 77754612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.0 bits)