BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2616
(82 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2JIS|A Chain A, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp.
pdb|2JIS|B Chain B, Human Cysteine Sulfinic Acid Decarboxylase (Csad) In
Complex With Plp
Length = 515
Score = 76.3 bits (186), Expect = 5e-15, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAP +KERM+K GSMMI YQP NFFR+V+ NSAL +DMD+ ++E+ERLG DL
Sbjct: 458 KVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515
>pdb|2OKJ|A Chain A, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
pdb|2OKJ|B Chain B, The X-Ray Crystal Structure Of The 67kda Isoform Of
Glutamic Acid Decarboxylase (Gad67)
Length = 504
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 445 KVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502
>pdb|3VP6|A Chain A, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
pdb|3VP6|B Chain B, Structural Characterization Of Glutamic Acid
Decarboxylase; Insights Into The Mechanism Of
Autoinactivation
Length = 511
Score = 72.4 bits (176), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 448 KVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 505
>pdb|2OKK|A Chain A, The X-Ray Crystal Structure Of The 65kda Isoform Of
Glutamic Acid Decarboxylase (Gad65)
Length = 497
Score = 72.0 bits (175), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 42/57 (73%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81
+VAP IK RMM+ G+ M++YQP+ NFFR+V+ N A H D+D+ I+EIERLG D
Sbjct: 441 KVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIERLGQD 497
>pdb|1AER|A Chain A, Domain Iii Of Pseudomonas Aeruginosa Exotoxin Complexed
With Beta-Tad
pdb|1AER|B Chain B, Domain Iii Of Pseudomonas Aeruginosa Exotoxin Complexed
With Beta-Tad
Length = 211
Score = 29.3 bits (64), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
P + R+ ++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 89 PDARGRI-RNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 137
>pdb|3B8H|B Chain B, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|D Chain D, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
pdb|3B8H|F Chain F, Structure Of The Eef2-Exoa(E546a)-Nad+ Complex
Length = 207
Score = 29.3 bits (64), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
P + R+ ++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 89 PDARGRI-RNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 137
>pdb|2ZIT|B Chain B, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|D Chain D, Structure Of The Eef2-Exoa-Nad+ Complex
pdb|2ZIT|F Chain F, Structure Of The Eef2-Exoa-Nad+ Complex
Length = 207
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
P + R+ ++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 89 PDARGRI-RNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 137
>pdb|1ZM2|B Chain B, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|D Chain D, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM2|F Chain F, Structure Of Adp-ribosylated Eef2 In Complex With
Catalytic Fragment Of Eta
pdb|1ZM3|B Chain B, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|D Chain D, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM3|F Chain F, Structure Of The Apo Eef2-Eta Complex
pdb|1ZM4|B Chain B, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|D Chain D, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM4|F Chain F, Structure Of The Eef2-Eta-Btad Complex
pdb|1ZM9|B Chain B, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|D Chain D, Structure Of Eef2-Eta In Complex With Pj34
pdb|1ZM9|F Chain F, Structure Of Eef2-Eta In Complex With Pj34
Length = 207
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
P + R+ ++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 89 PDARGRI-RNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 137
>pdb|3B78|B Chain B, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|D Chain D, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
pdb|3B78|F Chain F, Structure Of The Eef2-Exoa(R551h)-Nad+ Complex
Length = 207
Score = 29.3 bits (64), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
P + R+ ++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 89 PDARGRI-RNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 137
>pdb|3B82|B Chain B, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|D Chain D, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
pdb|3B82|F Chain F, Structure Of The Eef2-Exoa(E546h)-Nad+ Complex
Length = 207
Score = 28.9 bits (63), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
P + R+ ++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 89 PDARGRI-RNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 137
>pdb|1XK9|A Chain A, Pseudomanas Exotoxin A In Complex With The Pj34 Inhibitor
pdb|1XK9|B Chain B, Pseudomanas Exotoxin A In Complex With The Pj34 Inhibitor
Length = 215
Score = 28.9 bits (63), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
P + R+ ++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 89 PDARGRI-RNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 137
>pdb|1DMA|A Chain A, Domain Iii Of Pseudomonas Aeruginosa Exotoxin Complexed
With Nicotinamide And Amp
pdb|1DMA|B Chain B, Domain Iii Of Pseudomonas Aeruginosa Exotoxin Complexed
With Nicotinamide And Amp
Length = 214
Score = 28.9 bits (63), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 8/56 (14%)
Query: 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
P + R+ ++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 88 PDARGRI-RNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 136
>pdb|1IKQ|A Chain A, Pseudomonas Aeruginosa Exotoxin A, Wild Type
Length = 613
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 35 MKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
+++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 493 IRNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 535
>pdb|1IKP|A Chain A, Pseudomonas Aeruginosa Exotoxin A, P201q, W281a Mutant
Length = 613
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 7/49 (14%)
Query: 35 MKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
+++G+++ Y P +LP F+R L +A + + E+ERL GH L
Sbjct: 493 IRNGALLRVYVPRSSLPGFYRTSLTLAAPEAA------GEVERLIGHPL 535
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.400
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,973,613
Number of Sequences: 62578
Number of extensions: 53527
Number of successful extensions: 113
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 15
length of query: 82
length of database: 14,973,337
effective HSP length: 51
effective length of query: 31
effective length of database: 11,781,859
effective search space: 365237629
effective search space used: 365237629
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 45 (21.9 bits)