BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2616
(82 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P48321|DCE2_PIG Glutamate decarboxylase 2 OS=Sus scrofa GN=GAD2 PE=2 SV=1
Length = 585
Score = 77.4 bits (189), Expect = 3e-14, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 44/58 (75%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAP IK RMM+SG+ M++YQP+ NFFR+V+ N A H D+D+ I+EIERLG DL
Sbjct: 528 KVAPVIKARMMESGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIERLGQDL 585
>sp|Q9Y600|CSAD_HUMAN Cysteine sulfinic acid decarboxylase OS=Homo sapiens GN=CSAD PE=1
SV=2
Length = 493
Score = 76.6 bits (187), Expect = 4e-14, Method: Composition-based stats.
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAP +KERM+K GSMMI YQP NFFR+V+ NSAL +DMD+ ++E+ERLG DL
Sbjct: 436 KVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 493
>sp|P48320|DCE2_MOUSE Glutamate decarboxylase 2 OS=Mus musculus GN=Gad2 PE=2 SV=1
Length = 585
Score = 75.9 bits (185), Expect = 6e-14, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 11 LHSQSKNSNSSSSL-QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMD 69
L + N S L +VAP IK RMM+ G+ M++YQP+ NFFR+V+ N A H D+D
Sbjct: 513 LRTLEDNEERMSRLSKVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDID 572
Query: 70 YFIDEIERLGHDL 82
+ I+EIERLG DL
Sbjct: 573 FLIEEIERLGQDL 585
>sp|Q05683|DCE2_RAT Glutamate decarboxylase 2 OS=Rattus norvegicus GN=Gad2 PE=1 SV=1
Length = 585
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAP IK RMM+ G+ M++YQP+ NFFR+V+ N A H D+D+ I+EIERLG DL
Sbjct: 528 KVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIERLGQDL 585
>sp|Q4PRC2|DCE2_CANFA Glutamate decarboxylase 2 OS=Canis familiaris GN=GAD2 PE=2 SV=1
Length = 585
Score = 75.1 bits (183), Expect = 1e-13, Method: Composition-based stats.
Identities = 32/58 (55%), Positives = 43/58 (74%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAP IK RMM+ G+ M++YQP+ NFFR+V+ N A H D+D+ I+EIERLG DL
Sbjct: 528 KVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDIDFLIEEIERLGQDL 585
>sp|Q05329|DCE2_HUMAN Glutamate decarboxylase 2 OS=Homo sapiens GN=GAD2 PE=1 SV=1
Length = 585
Score = 74.7 bits (182), Expect = 1e-13, Method: Composition-based stats.
Identities = 36/73 (49%), Positives = 48/73 (65%), Gaps = 1/73 (1%)
Query: 11 LHSQSKNSNSSSSL-QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMD 69
L + N S L +VAP IK RMM+ G+ M++YQP+ NFFR+V+ N A H D+D
Sbjct: 513 LRTLEDNEERMSRLSKVAPVIKARMMEYGTTMVSYQPLGDKVNFFRMVISNPAATHQDID 572
Query: 70 YFIDEIERLGHDL 82
+ I+EIERLG DL
Sbjct: 573 FLIEEIERLGQDL 585
>sp|Q5R7S7|DCE1_PONAB Glutamate decarboxylase 1 OS=Pongo abelii GN=GAD1 PE=2 SV=1
Length = 594
Score = 73.2 bits (178), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 537 KVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 594
>sp|Q99259|DCE1_HUMAN Glutamate decarboxylase 1 OS=Homo sapiens GN=GAD1 PE=1 SV=1
Length = 594
Score = 72.8 bits (177), Expect = 5e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 537 KVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 594
>sp|P18088|DCE1_RAT Glutamate decarboxylase 1 OS=Rattus norvegicus GN=Gad1 PE=2 SV=1
Length = 593
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 536 RVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 593
>sp|Q5IS68|DCE1_PANTR Glutamate decarboxylase 1 OS=Pan troglodytes GN=GAD1 PE=2 SV=1
Length = 594
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 537 KVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 594
>sp|P14748|DCE1_FELCA Glutamate decarboxylase 1 OS=Felis catus GN=GAD1 PE=2 SV=3
Length = 594
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 537 RVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 594
>sp|A0PA85|DCE1_CANFA Glutamate decarboxylase 1 OS=Canis familiaris GN=GAD1 PE=2 SV=1
Length = 594
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 537 RVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 594
>sp|P48319|DCE1_PIG Glutamate decarboxylase 1 OS=Sus scrofa GN=GAD1 PE=2 SV=1
Length = 594
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 537 RVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 594
>sp|P48318|DCE1_MOUSE Glutamate decarboxylase 1 OS=Mus musculus GN=Gad1 PE=2 SV=2
Length = 593
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 536 RVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 593
>sp|Q0VCA1|DCE1_BOVIN Glutamate decarboxylase 1 OS=Bos taurus GN=GAD1 PE=2 SV=1
Length = 594
Score = 72.8 bits (177), Expect = 6e-13, Method: Composition-based stats.
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 537 RVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 594
>sp|Q64611|CSAD_RAT Cysteine sulfinic acid decarboxylase OS=Rattus norvegicus GN=Csad
PE=1 SV=1
Length = 493
Score = 72.8 bits (177), Expect = 7e-13, Method: Composition-based stats.
Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 1/73 (1%)
Query: 11 LHSQSKNSNSSSSL-QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMD 69
L + ++ + S L QVAP +KERM+K G+MMI YQP NFFR+V+ N L +D+D
Sbjct: 421 LRGKKESPDYSQRLSQVAPVLKERMVKKGTMMIGYQPHGTRANFFRMVVANPILVQADID 480
Query: 70 YFIDEIERLGHDL 82
+ + E+ERLG DL
Sbjct: 481 FLLGELERLGQDL 493
>sp|Q28D99|GADL1_XENTR Glutamate decarboxylase-like protein 1 (Fragment) OS=Xenopus
tropicalis GN=gadl1 PE=2 SV=2
Length = 511
Score = 71.2 bits (173), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 40/57 (70%)
Query: 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
VAP IKERMMK GSMM+ YQP NFFR ++ + + DMD+ +DEIERLG DL
Sbjct: 455 VAPTIKERMMKKGSMMVGYQPHRDKVNFFRHIVISPQVSREDMDFVLDEIERLGRDL 511
>sp|P20228|DCE_DROME Glutamate decarboxylase OS=Drosophila melanogaster GN=Gad1 PE=2
SV=2
Length = 510
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
++ P IK RMM+ G++M+ YQP PNFFR ++ ++A++ +D+D+ +DEI RLG DL
Sbjct: 453 KICPIIKGRMMQKGTLMVGYQPDDRRPNFFRSIISSAAVNEADVDFMLDEIHRLGDDL 510
>sp|A6QM00|GADL1_BOVIN Glutamate decarboxylase-like protein 1 OS=Bos taurus GN=GADL1 PE=2
SV=2
Length = 521
Score = 66.6 bits (161), Expect = 4e-11, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
VAP IKERMMK GS+M+ YQP NFFR V+ + + DMD+ +DEI+ LG D+
Sbjct: 465 VAPAIKERMMKKGSLMLGYQPHQGKVNFFRQVVISPQVSREDMDFLLDEIDLLGKDM 521
>sp|Q6ZQY3|GADL1_HUMAN Glutamate decarboxylase-like protein 1 OS=Homo sapiens GN=GADL1
PE=2 SV=4
Length = 521
Score = 66.2 bits (160), Expect = 5e-11, Method: Composition-based stats.
Identities = 30/57 (52%), Positives = 39/57 (68%)
Query: 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
VAP IKERMMK GS+M+ YQP NFFR V+ + + DMD+ +DEI+ LG D+
Sbjct: 465 VAPAIKERMMKKGSLMLGYQPHRGKVNFFRQVVISPQVSREDMDFLLDEIDLLGKDM 521
>sp|Q80WP8|GADL1_MOUSE Glutamate decarboxylase-like protein 1 OS=Mus musculus GN=Gadl1
PE=2 SV=3
Length = 550
Score = 65.5 bits (158), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 39/57 (68%)
Query: 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
VAP IKE+MMK GS+M+ YQP NFFR V+ + + DMD+ +DEI+ LG D+
Sbjct: 494 VAPAIKEKMMKKGSLMLGYQPHRGKVNFFRQVVISPQVSREDMDFLLDEIDSLGRDM 550
>sp|Q9DBE0|CSAD_MOUSE Cysteine sulfinic acid decarboxylase OS=Mus musculus GN=Csad PE=2
SV=1
Length = 493
Score = 57.4 bits (137), Expect = 3e-08, Method: Composition-based stats.
Identities = 28/61 (45%), Positives = 40/61 (65%), Gaps = 1/61 (1%)
Query: 11 LHSQSKNSNSSSSL-QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMD 69
L + ++ + S L QVAP +KERM+K G+MMI YQP NFFR+V+ N L +D+D
Sbjct: 421 LRGKKESPDYSQRLSQVAPVLKERMVKKGTMMIGYQPHGTRANFFRMVVANPILAQADID 480
Query: 70 Y 70
+
Sbjct: 481 F 481
>sp|Q8DJ45|PTH_THEEB Peptidyl-tRNA hydrolase OS=Thermosynechococcus elongatus (strain
BP-1) GN=pth PE=3 SV=1
Length = 205
Score = 29.3 bits (64), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%), Gaps = 1/40 (2%)
Query: 31 KERMMKSGSMM-ITYQPIHALPNFFRLVLQNSALDHSDMD 69
K R++K + M + Q +HAL NF++L L+ + + H D D
Sbjct: 60 KVRLLKPTTYMNSSGQSLHALLNFYKLPLERTLVVHDDAD 99
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.359
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,215,741
Number of Sequences: 539616
Number of extensions: 860814
Number of successful extensions: 2559
Number of sequences better than 100.0: 26
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2536
Number of HSP's gapped (non-prelim): 26
length of query: 82
length of database: 191,569,459
effective HSP length: 53
effective length of query: 29
effective length of database: 162,969,811
effective search space: 4726124519
effective search space used: 4726124519
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)