Query psy2616
Match_columns 82
No_of_seqs 102 out of 169
Neff 4.5
Searched_HMMs 46136
Date Fri Aug 16 20:44:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2616.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2616hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0629|consensus 99.9 1.6E-27 3.4E-32 192.1 5.6 74 9-82 436-510 (510)
2 PLN02590 probable tyrosine dec 98.4 2.9E-07 6.3E-12 75.4 4.5 59 22-81 474-532 (539)
3 TIGR03799 NOD_PanD_pyr putativ 98.2 2E-06 4.4E-11 69.9 4.9 57 21-77 459-521 (522)
4 PLN02880 tyrosine decarboxylas 97.9 1.2E-05 2.5E-10 64.7 3.8 58 23-81 427-484 (490)
5 cd06450 DOPA_deC_like DOPA dec 95.9 0.018 3.8E-07 42.2 4.8 51 27-78 295-345 (345)
6 PRK06290 aspartate aminotransf 92.2 0.33 7.1E-06 37.8 5.0 52 27-80 353-404 (410)
7 KOG1359|consensus 91.1 0.55 1.2E-05 38.1 5.3 57 25-81 355-412 (417)
8 PF15217 TSC21: TSC21 family 86.4 0.3 6.5E-06 35.8 0.8 29 36-64 17-65 (180)
9 PRK05387 histidinol-phosphate 86.3 2.5 5.5E-05 31.2 5.7 48 27-79 304-351 (353)
10 KOG0628|consensus 85.5 1.2 2.6E-05 37.4 4.0 57 24-81 415-471 (511)
11 cd06454 KBL_like KBL_like; thi 85.3 2.9 6.3E-05 30.4 5.5 51 27-79 296-349 (349)
12 KOG0634|consensus 85.2 1.1 2.3E-05 37.4 3.5 54 21-81 402-463 (472)
13 PRK13520 L-tyrosine decarboxyl 84.4 2.9 6.2E-05 30.9 5.2 47 28-79 323-369 (371)
14 PRK08153 histidinol-phosphate 84.3 3.1 6.7E-05 31.5 5.4 47 26-78 315-362 (369)
15 PRK05958 8-amino-7-oxononanoat 83.7 3.8 8.2E-05 30.2 5.6 50 27-78 332-384 (385)
16 PRK09792 4-aminobutyrate trans 82.8 3.9 8.5E-05 32.1 5.6 50 26-79 370-419 (421)
17 PRK02731 histidinol-phosphate 82.0 4.7 0.0001 30.0 5.5 47 27-78 317-363 (367)
18 TIGR01788 Glu-decarb-GAD gluta 81.5 3.2 6.8E-05 33.3 4.7 53 28-81 375-429 (431)
19 cd00617 Tnase_like Tryptophana 81.5 1.5 3.2E-05 35.2 2.9 48 33-80 355-407 (431)
20 PRK09105 putative aminotransfe 81.2 4.5 9.8E-05 30.8 5.3 47 27-79 322-368 (370)
21 PRK03158 histidinol-phosphate 81.0 4.1 8.8E-05 30.3 4.9 54 20-78 305-358 (359)
22 cd06451 AGAT_like Alanine-glyo 81.0 5.5 0.00012 29.3 5.6 50 27-78 304-354 (356)
23 PRK04635 histidinol-phosphate 80.7 5.6 0.00012 29.8 5.6 46 27-77 306-351 (354)
24 PRK13392 5-aminolevulinate syn 80.5 5.7 0.00012 30.4 5.6 52 28-81 342-397 (410)
25 TIGR03812 tyr_de_CO2_Arch tyro 80.0 4.7 0.0001 29.8 4.9 46 28-78 328-373 (373)
26 cd00609 AAT_like Aspartate ami 79.3 4.3 9.4E-05 28.9 4.4 47 27-76 302-349 (350)
27 PRK13393 5-aminolevulinate syn 78.8 6.7 0.00014 30.0 5.6 52 28-81 341-396 (406)
28 PRK07505 hypothetical protein; 78.7 7.4 0.00016 29.7 5.8 50 27-78 344-396 (402)
29 TIGR00858 bioF 8-amino-7-oxono 78.6 5.2 0.00011 29.0 4.7 47 27-75 310-359 (360)
30 TIGR02539 SepCysS Sep-tRNA:Cys 78.3 5 0.00011 30.4 4.7 47 29-81 322-368 (370)
31 TIGR03301 PhnW-AepZ 2-aminoeth 78.3 7 0.00015 28.4 5.3 47 29-78 308-354 (355)
32 PRK08088 4-aminobutyrate amino 77.8 7.6 0.00016 30.3 5.7 49 26-78 372-420 (425)
33 PRK14807 histidinol-phosphate 75.9 8.7 0.00019 28.7 5.4 54 20-78 296-349 (351)
34 PLN03026 histidinol-phosphate 75.0 8.7 0.00019 29.3 5.3 47 27-78 333-379 (380)
35 PRK06058 4-aminobutyrate amino 74.7 9 0.00019 30.3 5.4 50 26-79 391-440 (443)
36 PRK04781 histidinol-phosphate 74.3 9.9 0.00022 28.8 5.4 54 20-78 307-360 (364)
37 PLN02721 threonine aldolase 74.0 11 0.00025 27.4 5.5 49 27-81 304-352 (353)
38 PRK06777 4-aminobutyrate amino 73.7 9.4 0.0002 29.9 5.3 47 26-78 370-418 (421)
39 TIGR03687 pupylate_cterm ubiqu 73.7 2.8 6.2E-05 23.3 1.7 13 66-78 3-15 (33)
40 PRK01688 histidinol-phosphate 73.1 7.4 0.00016 29.3 4.4 45 27-75 306-350 (351)
41 PRK07179 hypothetical protein; 72.7 13 0.00028 28.4 5.7 50 28-79 344-396 (407)
42 TIGR01821 5aminolev_synth 5-am 72.7 13 0.00027 28.3 5.6 52 27-80 340-395 (402)
43 PRK03317 histidinol-phosphate 72.6 9.8 0.00021 28.5 5.0 44 27-78 318-361 (368)
44 PRK06541 hypothetical protein; 72.4 11 0.00024 30.1 5.5 45 29-79 407-453 (460)
45 cd06453 SufS_like Cysteine des 72.0 7.9 0.00017 28.7 4.3 46 28-75 320-373 (373)
46 TIGR01822 2am3keto_CoA 2-amino 71.0 16 0.00035 27.4 5.8 53 27-81 334-389 (393)
47 PRK05166 histidinol-phosphate 71.0 11 0.00024 28.4 5.0 55 20-79 315-369 (371)
48 PRK08117 4-aminobutyrate amino 70.9 12 0.00026 29.2 5.3 50 26-79 378-427 (433)
49 PRK07483 hypothetical protein; 70.7 12 0.00027 29.7 5.4 49 26-78 381-434 (443)
50 cd00610 OAT_like Acetyl ornith 70.6 15 0.00032 27.6 5.5 46 27-78 367-412 (413)
51 PRK05937 8-amino-7-oxononanoat 69.9 17 0.00038 27.5 5.8 48 28-78 300-347 (370)
52 PRK06917 hypothetical protein; 69.1 14 0.00031 29.4 5.4 49 26-78 381-434 (447)
53 KOG0042|consensus 68.4 4.3 9.3E-05 35.2 2.4 21 57-77 354-374 (680)
54 PRK07908 hypothetical protein; 68.0 11 0.00025 28.0 4.4 54 20-78 290-344 (349)
55 PRK00950 histidinol-phosphate 67.9 17 0.00036 26.9 5.3 48 27-78 311-359 (361)
56 TIGR02618 tyr_phenol_ly tyrosi 67.9 4.7 0.0001 33.2 2.5 48 33-80 373-425 (450)
57 PLN02483 serine palmitoyltrans 67.8 15 0.00033 29.6 5.4 53 28-81 412-466 (489)
58 TIGR01364 serC_1 phosphoserine 66.7 16 0.00035 28.0 5.1 49 28-80 299-347 (349)
59 PRK06425 histidinol-phosphate 66.6 20 0.00044 26.6 5.5 47 27-78 282-330 (332)
60 TIGR01885 Orn_aminotrans ornit 66.4 19 0.00041 27.5 5.5 46 27-78 354-399 (401)
61 TIGR02617 tnaA_trp_ase tryptop 66.0 5.5 0.00012 33.2 2.6 48 33-80 388-440 (467)
62 PRK05664 threonine-phosphate d 65.9 17 0.00036 27.1 5.0 47 27-80 281-327 (330)
63 PRK13237 tyrosine phenol-lyase 65.0 5.9 0.00013 32.7 2.6 48 33-80 380-432 (460)
64 TIGR01365 serC_2 phosphoserine 65.0 19 0.00042 28.4 5.4 48 27-78 321-370 (374)
65 PRK06149 hypothetical protein; 64.9 16 0.00034 32.2 5.2 47 26-78 919-967 (972)
66 PF01724 DUF29: Domain of unkn 64.3 4.5 9.8E-05 28.0 1.6 19 62-80 21-39 (139)
67 PRK09064 5-aminolevulinate syn 64.2 23 0.0005 26.9 5.5 52 28-81 342-397 (407)
68 TIGR03576 pyridox_MJ0158 pyrid 64.0 13 0.00027 28.6 4.1 49 28-77 294-343 (346)
69 PRK07678 aminotransferase; Val 63.9 21 0.00046 28.4 5.5 50 26-79 394-447 (451)
70 PF05639 Pup: Pup-like protein 63.6 3.5 7.6E-05 26.2 0.8 16 63-78 36-51 (69)
71 PRK13479 2-aminoethylphosphona 62.8 28 0.00061 25.8 5.7 48 28-78 313-360 (368)
72 TIGR01141 hisC histidinol-phos 62.4 21 0.00044 26.3 4.8 42 27-75 301-345 (346)
73 PRK04073 rocD ornithine--oxo-a 62.2 25 0.00053 26.9 5.4 46 27-78 349-394 (396)
74 PRK03244 argD acetylornithine 60.9 29 0.00063 26.3 5.5 47 27-79 346-392 (398)
75 PRK10874 cysteine sulfinate de 60.8 30 0.00065 26.2 5.6 50 28-79 339-396 (401)
76 PRK03080 phosphoserine aminotr 60.8 29 0.00063 26.6 5.6 49 29-79 323-371 (378)
77 PRK04870 histidinol-phosphate 60.7 28 0.00061 25.9 5.3 47 27-78 307-355 (356)
78 cd00611 PSAT_like Phosphoserin 60.2 21 0.00046 27.0 4.7 44 32-79 311-354 (355)
79 PRK12381 bifunctional succinyl 59.9 29 0.00062 26.8 5.4 47 26-78 350-396 (406)
80 PRK05355 3-phosphoserine/phosp 59.8 30 0.00065 26.6 5.5 47 29-79 310-356 (360)
81 PLN02452 phosphoserine transam 59.4 25 0.00053 27.6 5.0 49 27-79 313-361 (365)
82 TIGR01814 kynureninase kynuren 59.1 27 0.00059 26.7 5.1 46 28-78 359-404 (406)
83 PF09078 CheY-binding: CheY bi 59.0 11 0.00024 23.6 2.5 25 54-80 1-25 (65)
84 TIGR00700 GABAtrnsam 4-aminobu 58.3 31 0.00068 26.8 5.5 49 26-78 369-417 (420)
85 PRK14809 histidinol-phosphate 58.3 37 0.0008 25.3 5.7 48 27-79 308-355 (357)
86 TIGR03372 putres_am_tran putre 58.2 29 0.00063 27.9 5.4 49 26-78 393-441 (442)
87 PRK11522 putrescine--2-oxoglut 58.2 30 0.00064 27.9 5.4 49 26-78 400-448 (459)
88 PRK06225 aspartate aminotransf 57.9 32 0.00069 25.9 5.3 49 27-78 323-373 (380)
89 PRK06918 4-aminobutyrate amino 57.7 35 0.00076 27.0 5.7 49 26-78 392-440 (451)
90 TIGR00709 dat 2,4-diaminobutyr 57.2 32 0.0007 27.2 5.4 49 26-78 384-432 (442)
91 TIGR03588 PseC UDP-4-keto-6-de 56.0 34 0.00073 25.9 5.2 52 27-78 309-379 (380)
92 KOG1357|consensus 56.0 6.3 0.00014 33.3 1.3 22 60-81 481-502 (519)
93 PF00155 Aminotran_1_2: Aminot 55.5 27 0.00058 25.6 4.4 53 20-75 309-363 (363)
94 PLN02822 serine palmitoyltrans 54.8 31 0.00067 27.8 5.0 51 28-80 420-476 (481)
95 TIGR00707 argD acetylornithine 54.4 44 0.00094 24.8 5.4 46 27-78 333-378 (379)
96 PRK04366 glycine dehydrogenase 54.2 25 0.00055 28.2 4.4 52 27-81 395-448 (481)
97 TIGR02326 transamin_PhnW 2-ami 54.1 41 0.0009 25.0 5.3 46 29-78 313-359 (363)
98 PRK06082 4-aminobutyrate amino 54.1 37 0.0008 27.2 5.3 45 26-78 402-448 (459)
99 TIGR01825 gly_Cac_T_rel pyrido 53.8 39 0.00085 25.1 5.1 51 29-80 328-380 (385)
100 PRK03967 histidinol-phosphate 53.4 35 0.00075 25.5 4.8 45 30-80 289-333 (337)
101 PRK07681 aspartate aminotransf 53.3 33 0.00072 26.1 4.8 58 20-80 326-387 (399)
102 PF12793 SgrR_N: Sugar transpo 53.1 55 0.0012 21.9 5.3 31 27-59 36-66 (115)
103 PRK05769 4-aminobutyrate amino 53.0 34 0.00073 27.2 4.9 46 26-79 390-437 (441)
104 TIGR01976 am_tr_V_VC1184 cyste 52.8 30 0.00064 25.9 4.4 47 27-75 340-397 (397)
105 PRK06358 threonine-phosphate d 52.7 43 0.00093 25.2 5.2 54 20-78 298-352 (354)
106 PRK00854 rocD ornithine--oxo-a 52.1 47 0.001 25.2 5.4 45 28-78 354-398 (401)
107 PRK05639 4-aminobutyrate amino 52.0 43 0.00092 26.9 5.4 49 26-78 392-440 (457)
108 PRK06148 hypothetical protein; 51.8 35 0.00075 30.4 5.2 49 26-78 959-1007(1013)
109 PRK04260 acetylornithine amino 51.6 34 0.00073 25.8 4.5 53 20-78 322-374 (375)
110 PRK06959 putative threonine-ph 51.0 43 0.00094 25.2 5.0 52 20-79 280-331 (339)
111 PRK02936 argD acetylornithine 50.6 48 0.001 24.8 5.2 46 27-78 331-376 (377)
112 PRK05964 adenosylmethionine--8 49.5 46 0.001 25.9 5.1 46 27-81 375-422 (423)
113 COG3033 TnaA Tryptophanase [Am 49.5 17 0.00036 30.4 2.7 48 33-80 391-443 (471)
114 PHA02698 hypothetical protein; 49.2 11 0.00023 24.9 1.3 19 62-80 65-83 (89)
115 PTZ00125 ornithine aminotransf 48.9 57 0.0012 24.6 5.4 46 27-78 347-392 (400)
116 PRK07495 4-aminobutyrate amino 48.8 50 0.0011 26.1 5.2 47 26-78 370-418 (425)
117 TIGR02407 ectoine_ectB diamino 48.7 59 0.0013 25.4 5.6 48 27-78 362-409 (412)
118 PRK08593 4-aminobutyrate amino 48.7 50 0.0011 26.3 5.2 48 26-79 380-427 (445)
119 PRK00451 glycine dehydrogenase 48.6 56 0.0012 25.2 5.4 50 28-78 394-445 (447)
120 PLN02624 ornithine-delta-amino 48.5 53 0.0011 26.3 5.4 46 27-78 396-441 (474)
121 PRK06931 diaminobutyrate--2-ox 48.2 55 0.0012 26.3 5.4 49 26-78 403-451 (459)
122 TIGR01366 serC_3 phosphoserine 48.2 53 0.0011 25.2 5.2 50 29-81 310-360 (361)
123 COG0578 GlpA Glycerol-3-phosph 47.9 18 0.00038 30.5 2.7 19 58-76 295-313 (532)
124 PRK08056 threonine-phosphate d 47.8 53 0.0011 24.6 5.0 55 20-78 297-352 (356)
125 PRK08360 4-aminobutyrate amino 47.6 59 0.0013 25.9 5.5 47 26-78 377-423 (443)
126 TIGR01979 sufS cysteine desulf 47.5 40 0.00087 25.4 4.4 52 28-81 342-401 (403)
127 PRK14808 histidinol-phosphate 47.4 41 0.0009 25.2 4.4 48 20-77 285-333 (335)
128 PF01765 RRF: Ribosome recycli 47.4 25 0.00054 24.5 3.0 49 26-80 56-104 (165)
129 PLN02955 8-amino-7-oxononanoat 47.2 70 0.0015 26.5 6.0 51 27-79 406-459 (476)
130 PRK07036 hypothetical protein; 47.0 44 0.00095 26.8 4.7 44 26-78 404-449 (466)
131 PRK13238 tnaA tryptophanase/L- 46.7 26 0.00055 28.2 3.4 48 33-80 380-432 (460)
132 PRK06737 acetolactate synthase 46.5 25 0.00054 22.2 2.7 53 22-78 15-67 (76)
133 PRK07482 hypothetical protein; 46.3 60 0.0013 26.0 5.4 48 26-78 404-451 (461)
134 PLN03227 serine palmitoyltrans 45.9 45 0.00097 25.9 4.5 52 28-80 324-381 (392)
135 cd04869 ACT_GcvR_2 ACT domains 45.9 50 0.0011 19.3 3.9 50 30-81 16-72 (81)
136 PRK06939 2-amino-3-ketobutyrat 45.6 71 0.0015 23.6 5.4 53 27-80 338-392 (397)
137 PRK09082 methionine aminotrans 44.6 47 0.001 25.1 4.4 55 19-77 322-385 (386)
138 PRK07046 aminotransferase; Val 44.5 54 0.0012 26.3 4.9 44 26-78 404-447 (453)
139 PRK09331 Sep-tRNA:Cys-tRNA syn 44.4 49 0.0011 25.2 4.5 47 28-80 334-380 (387)
140 PRK02948 cysteine desulfurase; 44.3 24 0.00052 26.4 2.7 29 51-80 345-373 (381)
141 PRK13562 acetolactate synthase 44.0 31 0.00068 22.4 2.9 53 23-78 16-68 (84)
142 PRK05965 hypothetical protein; 43.0 68 0.0015 25.7 5.2 47 26-78 398-444 (459)
143 PRK07480 putative aminotransfe 42.9 67 0.0015 25.7 5.2 42 28-78 402-445 (456)
144 PRK14012 cysteine desulfurase; 42.8 24 0.00052 26.9 2.5 28 52-80 351-378 (404)
145 PRK07865 N-succinyldiaminopime 42.2 51 0.0011 24.6 4.2 53 20-75 309-362 (364)
146 PRK00011 glyA serine hydroxyme 41.8 66 0.0014 24.5 4.8 52 27-79 327-387 (416)
147 PRK05093 argD bifunctional N-s 41.7 87 0.0019 24.0 5.5 46 27-78 352-397 (403)
148 PLN00144 acetylornithine trans 41.0 62 0.0013 25.0 4.6 48 27-79 331-378 (382)
149 PRK02610 histidinol-phosphate 40.9 63 0.0014 24.4 4.6 43 27-79 327-369 (374)
150 cd06410 PB1_UP2 Uncharacterize 40.8 53 0.0012 21.5 3.7 46 29-79 41-86 (97)
151 TIGR00713 hemL glutamate-1-sem 40.7 59 0.0013 25.0 4.4 45 27-79 376-420 (423)
152 cd06452 SepCysS Sep-tRNA:Cys-t 40.6 75 0.0016 23.7 4.9 45 29-79 316-360 (361)
153 cd04886 ACT_ThrD-II-like C-ter 40.3 64 0.0014 17.6 3.8 17 64-80 53-69 (73)
154 PRK11633 cell division protein 40.1 89 0.0019 23.5 5.2 50 27-78 163-213 (226)
155 PRK00615 glutamate-1-semialdeh 40.0 40 0.00087 26.9 3.5 46 28-81 383-428 (433)
156 TIGR03246 arg_catab_astC succi 39.8 84 0.0018 24.2 5.2 46 27-78 347-392 (397)
157 COG4992 ArgD Ornithine/acetylo 39.6 76 0.0016 26.1 5.1 46 26-79 349-396 (404)
158 PF03574 Peptidase_S48: Peptid 39.4 12 0.00026 26.8 0.4 36 6-41 104-144 (149)
159 TIGR01977 am_tr_V_EF2568 cyste 39.4 40 0.00086 24.9 3.2 48 28-77 317-375 (376)
160 PF14085 DUF4265: Domain of un 39.3 38 0.00081 22.5 2.8 29 51-81 51-80 (117)
161 COG2008 GLY1 Threonine aldolas 39.3 44 0.00096 26.8 3.6 26 52-78 315-340 (342)
162 PF12418 AcylCoA_DH_N: Acyl-Co 39.0 34 0.00074 18.2 2.1 18 62-79 4-21 (34)
163 COG0160 GabT 4-aminobutyrate a 38.2 73 0.0016 26.3 4.8 49 25-78 393-442 (447)
164 cd00520 RRF Ribosome recycling 38.2 75 0.0016 22.7 4.4 49 26-80 70-118 (179)
165 PF14566 PTPlike_phytase: Inos 38.0 32 0.00069 23.5 2.4 30 51-80 93-123 (149)
166 PRK15481 transcriptional regul 37.4 84 0.0018 24.2 4.8 56 20-78 370-428 (431)
167 PHA01632 hypothetical protein 37.3 20 0.00044 22.4 1.1 33 7-42 20-55 (64)
168 PRK07392 threonine-phosphate d 37.3 1.5E+02 0.0033 22.1 6.1 54 20-78 300-356 (360)
169 TIGR01140 L_thr_O3P_dcar L-thr 37.1 50 0.0011 24.5 3.5 44 28-75 285-329 (330)
170 cd02575 PseudoU_synth_EcTruD P 37.1 49 0.0011 25.2 3.5 31 49-79 109-139 (253)
171 PF03147 FDX-ACB: Ferredoxin-f 37.0 51 0.0011 20.7 3.0 60 19-78 19-84 (94)
172 PRK03321 putative aminotransfe 36.9 78 0.0017 23.4 4.5 50 20-78 299-348 (352)
173 TIGR03392 FeS_syn_CsdA cystein 36.8 1E+02 0.0022 23.3 5.1 50 29-80 337-394 (398)
174 PRK06105 aminotransferase; Pro 36.8 94 0.002 24.9 5.2 44 26-78 401-446 (460)
175 PRK14042 pyruvate carboxylase 36.6 19 0.00041 30.6 1.3 62 17-80 60-137 (596)
176 PRK06938 diaminobutyrate--2-ox 36.2 1.1E+02 0.0023 24.7 5.4 49 26-78 409-457 (464)
177 TIGR00699 GABAtrns_euk 4-amino 36.1 1E+02 0.0022 25.2 5.3 46 27-78 418-463 (464)
178 cd06502 TA_like Low-specificit 36.1 1E+02 0.0022 22.3 4.8 25 52-77 313-337 (338)
179 PRK07481 hypothetical protein; 35.9 94 0.002 24.7 5.0 44 26-78 397-442 (449)
180 PRK01533 histidinol-phosphate 34.9 87 0.0019 23.9 4.5 42 27-78 311-352 (366)
181 PF04455 Saccharop_dh_N: LOR/S 34.7 46 0.001 22.3 2.7 31 49-81 44-74 (103)
182 PRK00083 frr ribosome recyclin 34.5 91 0.002 22.5 4.4 49 26-80 74-122 (185)
183 PRK01278 argD acetylornithine 34.5 1.3E+02 0.0028 22.8 5.3 47 27-79 340-386 (389)
184 PRK05764 aspartate aminotransf 34.4 1.3E+02 0.0029 22.5 5.4 45 28-78 341-388 (393)
185 TIGR00508 bioA adenosylmethion 34.2 1E+02 0.0022 24.4 4.9 20 59-78 402-423 (427)
186 PRK04612 argD acetylornithine 34.0 97 0.0021 24.3 4.8 47 26-78 354-400 (408)
187 TIGR03251 LAT_fam L-lysine 6-t 33.9 1.1E+02 0.0024 24.1 5.1 46 27-78 386-431 (431)
188 PLN02376 1-aminocyclopropane-1 33.7 1.3E+02 0.0028 24.4 5.5 44 29-77 386-434 (496)
189 PRK13034 serine hydroxymethylt 33.7 1E+02 0.0022 24.1 4.9 49 29-79 332-390 (416)
190 PLN02607 1-aminocyclopropane-1 33.6 53 0.0012 26.1 3.3 44 29-77 385-433 (447)
191 COG0156 BioF 7-keto-8-aminopel 33.6 1.4E+02 0.003 24.0 5.7 53 26-79 334-388 (388)
192 TIGR03537 DapC succinyldiamino 33.2 98 0.0021 23.0 4.5 55 20-77 292-349 (350)
193 PRK05839 hypothetical protein; 33.1 1.4E+02 0.003 22.6 5.3 55 20-78 313-371 (374)
194 cd00613 GDC-P Glycine cleavage 32.9 85 0.0018 23.4 4.1 44 28-74 354-397 (398)
195 PLN02656 tyrosine transaminase 32.5 1.3E+02 0.0027 23.2 5.1 42 30-77 356-399 (409)
196 TIGR00094 tRNA_TruD_broad tRNA 32.5 61 0.0013 25.4 3.4 31 49-79 126-156 (387)
197 PRK10534 L-threonine aldolase; 32.5 1E+02 0.0022 22.5 4.4 44 27-78 287-330 (333)
198 PRK13360 omega amino acid--pyr 32.0 1.2E+02 0.0025 24.2 5.0 44 28-80 394-439 (442)
199 PRK09221 beta alanine--pyruvat 32.0 1.4E+02 0.003 23.8 5.4 45 27-78 396-440 (445)
200 cd05566 PTS_IIB_galactitol PTS 31.8 43 0.00092 20.3 2.0 23 56-78 66-88 (89)
201 PRK09264 diaminobutyrate--2-ox 31.8 1.6E+02 0.0035 23.0 5.7 48 26-78 365-413 (425)
202 PRK08354 putative aminotransfe 31.5 1.1E+02 0.0023 22.6 4.4 47 27-78 263-309 (311)
203 PF08963 DUF1878: Protein of u 31.3 8.5 0.00018 26.6 -1.3 35 41-80 21-55 (113)
204 cd02552 PseudoU_synth_TruD_lik 31.1 64 0.0014 24.0 3.2 31 49-79 115-146 (232)
205 PLN02482 glutamate-1-semialdeh 30.9 96 0.0021 25.2 4.4 47 27-81 427-473 (474)
206 PRK08637 hypothetical protein; 30.8 1.4E+02 0.003 22.7 5.0 54 20-80 330-385 (388)
207 CHL00123 rps6 ribosomal protei 30.6 77 0.0017 20.4 3.2 26 53-78 7-33 (97)
208 PRK08912 hypothetical protein; 30.6 76 0.0017 23.9 3.6 46 29-77 333-382 (387)
209 TIGR00496 frr ribosome recycli 30.5 1.2E+02 0.0026 21.8 4.4 49 26-80 65-113 (176)
210 PRK08178 acetolactate synthase 30.3 66 0.0014 21.4 2.8 51 23-78 22-72 (96)
211 PLN00143 tyrosine/nicotianamin 30.2 1.7E+02 0.0037 22.5 5.5 43 31-77 358-400 (409)
212 KOG1404|consensus 30.1 1E+02 0.0022 25.9 4.3 45 25-75 386-432 (442)
213 TIGR03539 DapC_actino succinyl 29.8 98 0.0021 23.1 4.0 53 20-75 303-356 (357)
214 PRK13396 3-deoxy-7-phosphohept 29.8 61 0.0013 25.9 3.0 24 57-80 3-26 (352)
215 PRK13245 hetR heterocyst diffe 29.5 37 0.00081 26.7 1.7 36 6-41 157-197 (299)
216 PRK06836 aspartate aminotransf 29.5 1.5E+02 0.0033 22.5 5.0 46 29-78 343-388 (394)
217 PLN02450 1-aminocyclopropane-1 29.3 71 0.0015 25.5 3.3 44 30-78 379-427 (468)
218 TIGR02006 IscS cysteine desulf 28.6 51 0.0011 25.2 2.4 28 52-80 349-376 (402)
219 cd05568 PTS_IIB_bgl_like PTS_I 28.6 75 0.0016 18.6 2.7 41 35-77 44-84 (85)
220 PRK04013 argD acetylornithine/ 27.8 1.8E+02 0.004 22.6 5.3 44 27-78 312-357 (364)
221 PF06877 RraB: Regulator of ri 27.8 1.5E+02 0.0032 18.5 4.1 54 27-81 38-94 (104)
222 TIGR03402 FeS_nifS cysteine de 27.7 87 0.0019 23.4 3.4 28 51-79 343-370 (379)
223 TIGR03403 nifS_epsilon cystein 27.7 56 0.0012 24.5 2.4 27 52-79 347-373 (382)
224 PRK12403 putative aminotransfe 27.6 1.3E+02 0.0028 24.1 4.5 43 27-78 405-449 (460)
225 PRK12581 oxaloacetate decarbox 27.6 34 0.00074 28.4 1.3 64 15-80 67-146 (468)
226 PF14966 DNA_repr_REX1B: DNA r 27.5 54 0.0012 21.4 2.0 28 4-31 23-50 (97)
227 PF06254 DUF1019: Protein of u 27.4 45 0.00097 22.0 1.6 30 4-34 10-39 (89)
228 PLN02760 4-aminobutyrate:pyruv 27.3 1.7E+02 0.0036 24.0 5.2 44 26-78 443-488 (504)
229 PRK06173 adenosylmethionine--8 27.2 1.8E+02 0.004 23.0 5.3 43 27-78 378-422 (429)
230 TIGR01264 tyr_amTase_E tyrosin 26.8 2.1E+02 0.0045 21.7 5.4 47 28-78 349-396 (401)
231 PF00356 LacI: Bacterial regul 26.7 67 0.0015 18.2 2.1 23 57-79 19-42 (46)
232 PF08497 Radical_SAM_N: Radica 26.4 59 0.0013 25.9 2.4 26 42-72 248-276 (302)
233 PTZ00094 serine hydroxymethylt 26.4 1.2E+02 0.0026 24.0 4.1 50 29-79 349-406 (452)
234 COG5646 Uncharacterized conser 26.2 65 0.0014 22.7 2.3 44 7-50 4-61 (126)
235 PF05542 DUF760: Protein of un 26.1 1.4E+02 0.003 18.9 3.7 59 6-72 2-62 (86)
236 PRK09440 avtA valine--pyruvate 26.0 2.1E+02 0.0045 21.8 5.3 56 20-78 342-408 (416)
237 PF09684 Tail_P2_I: Phage tail 25.9 1.4E+02 0.0031 19.7 3.9 29 49-77 104-134 (139)
238 PRK07550 hypothetical protein; 25.6 1.8E+02 0.004 21.8 4.8 48 27-79 333-385 (386)
239 PRK06062 hypothetical protein; 25.5 1.7E+02 0.0036 23.4 4.8 44 26-78 397-442 (451)
240 PF08212 Lipocalin_2: Lipocali 25.4 99 0.0021 20.5 3.1 25 57-81 109-134 (143)
241 cd04934 ACT_AK-Hom3_1 CT domai 25.1 99 0.0021 18.7 2.8 52 26-80 17-68 (73)
242 PF06260 DUF1024: Protein of u 25.1 23 0.0005 23.3 -0.1 26 55-80 9-34 (82)
243 PRK13019 clpS ATP-dependent Cl 25.0 97 0.0021 20.3 2.9 27 48-76 16-42 (94)
244 PRK11706 TDP-4-oxo-6-deoxy-D-g 24.5 76 0.0017 24.1 2.6 52 27-78 302-373 (375)
245 PRK02627 acetylornithine amino 24.4 2E+02 0.0043 21.5 4.8 47 27-79 346-392 (396)
246 TIGR00461 gcvP glycine dehydro 24.3 1.1E+02 0.0024 27.7 3.9 53 24-81 813-867 (939)
247 PRK12414 putative aminotransfe 24.2 2.2E+02 0.0047 21.6 5.1 44 29-75 335-381 (384)
248 PTZ00433 tyrosine aminotransfe 24.1 2.5E+02 0.0053 21.6 5.4 46 27-78 357-405 (412)
249 PRK06107 aspartate aminotransf 24.0 1.1E+02 0.0024 23.3 3.5 26 50-78 372-397 (402)
250 TIGR02302 aProt_lowcomp conser 23.6 90 0.002 27.9 3.2 20 61-80 563-582 (851)
251 PF02881 SRP54_N: SRP54-type p 23.5 89 0.0019 18.3 2.3 17 62-78 17-33 (75)
252 PF04651 Pox_A12: Poxvirus A12 23.3 38 0.00082 25.3 0.8 25 14-38 9-33 (189)
253 PRK03715 argD acetylornithine 23.2 2.2E+02 0.0047 22.2 5.0 28 52-80 365-392 (395)
254 PRK07568 aspartate aminotransf 23.2 1.4E+02 0.0031 22.4 3.8 25 51-78 365-389 (397)
255 PF15296 Codanin-1_C: Codanin- 23.1 30 0.00066 23.8 0.2 21 52-75 74-94 (121)
256 PRK09295 bifunctional cysteine 23.1 91 0.002 23.7 2.8 28 52-80 376-403 (406)
257 PRK00984 truD tRNA pseudouridi 23.0 1.6E+02 0.0035 23.1 4.3 31 49-79 126-156 (341)
258 COG1167 ARO8 Transcriptional r 22.9 2.7E+02 0.0058 22.3 5.5 57 20-78 390-452 (459)
259 PRK07445 O-succinylbenzoic aci 22.8 1.7E+02 0.0037 22.6 4.3 67 8-75 5-91 (452)
260 PRK07777 aminotransferase; Val 22.5 1.4E+02 0.0031 22.4 3.8 48 27-78 330-383 (387)
261 TIGR01634 tail_P2_I phage tail 22.3 1.5E+02 0.0032 20.7 3.5 33 44-77 100-134 (139)
262 PLN00145 tyrosine/nicotianamin 22.2 2.5E+02 0.0055 22.0 5.2 44 29-77 375-420 (430)
263 PRK12330 oxaloacetate decarbox 22.1 44 0.00096 27.9 1.0 62 16-80 60-138 (499)
264 PRK05287 hypothetical protein; 22.0 63 0.0014 24.7 1.8 22 59-80 79-100 (250)
265 PLN02672 methionine S-methyltr 21.9 2.3E+02 0.0049 26.2 5.4 48 28-78 1030-1077(1082)
266 PF10346 Con-6: Conidiation pr 21.7 1.2E+02 0.0026 16.9 2.4 23 57-79 13-35 (36)
267 PRK05367 glycine dehydrogenase 21.6 1.8E+02 0.0038 26.2 4.6 50 27-80 824-874 (954)
268 PRK13355 bifunctional HTH-doma 21.6 2.3E+02 0.005 22.7 4.9 46 29-77 464-510 (517)
269 TIGR01235 pyruv_carbox pyruvat 21.4 65 0.0014 29.5 2.0 32 18-49 590-624 (1143)
270 PRK05630 adenosylmethionine--8 21.4 2.1E+02 0.0046 22.6 4.6 41 29-78 375-417 (422)
271 PRK08297 L-lysine aminotransfe 21.3 2.1E+02 0.0046 22.8 4.7 47 27-79 393-439 (443)
272 PRK01261 aroD 3-dehydroquinate 21.2 1.2E+02 0.0026 22.5 3.1 29 54-82 120-148 (229)
273 COG4582 Uncharacterized protei 21.2 86 0.0019 24.2 2.3 25 58-82 75-99 (244)
274 PRK07309 aromatic amino acid a 21.0 3.2E+02 0.0069 20.7 5.4 47 28-78 336-385 (391)
275 cd00378 SHMT Serine-glycine hy 20.8 2.2E+02 0.0047 21.4 4.4 52 28-80 324-384 (402)
276 PLN02187 rooty/superroot1 20.7 2.8E+02 0.0062 22.0 5.3 41 31-77 392-434 (462)
277 PRK08742 adenosylmethionine--8 20.5 2.6E+02 0.0057 22.6 5.1 45 27-78 420-464 (472)
278 PF03808 Glyco_tran_WecB: Glyc 20.2 2E+02 0.0044 19.8 3.9 23 60-82 82-104 (172)
279 PF01142 TruD: tRNA pseudourid 20.2 57 0.0012 25.5 1.2 31 49-79 124-156 (378)
280 PRK09265 aminotransferase AlaT 20.1 2.7E+02 0.0058 21.2 4.9 47 28-78 350-398 (404)
No 1
>KOG0629|consensus
Probab=99.94 E-value=1.6e-27 Score=192.05 Aligned_cols=74 Identities=53% Similarity=0.887 Sum_probs=70.7
Q ss_pred HHHhcCCC-CchhhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcccC
Q psy2616 9 EQLHSQSK-NSNSSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82 (82)
Q Consensus 9 ~~l~~~~~-~e~~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~dl 82 (82)
+.||+.+. +++|.+|+||||+||++|+++||+||+|||++.++||||+|++||++|.+|+||+||||+|||+||
T Consensus 436 ~~lR~~~~~~e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq~l 510 (510)
T KOG0629|consen 436 PSLRGWQENPERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQDL 510 (510)
T ss_pred hHhccCcccchhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhccCC
Confidence 46888877 779999999999999999999999999999999999999999999999999999999999999997
No 2
>PLN02590 probable tyrosine decarboxylase
Probab=98.41 E-value=2.9e-07 Score=75.39 Aligned_cols=59 Identities=7% Similarity=0.124 Sum_probs=53.1
Q ss_pred hhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 22 SSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 22 kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
.+.+++..|.++|.++|.++|+++.+.++ .++|++++||.+|.+|||+++++|.+.+..
T Consensus 474 ~~~~ln~~l~~~l~~~G~~~vs~t~~~g~-~~lR~~i~n~~T~~~dv~~~~~~i~~~a~~ 532 (539)
T PLN02590 474 QCNERNRELLAAVNSTGKIFISHTALSGK-FVLRFAVGAPLTEEKHVTEAWQIIQKHASK 532 (539)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeeEECCE-EEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 35667889999999999999999998876 499999999999999999999999988754
No 3
>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase. This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).
Probab=98.20 E-value=2e-06 Score=69.95 Aligned_cols=57 Identities=19% Similarity=0.274 Sum_probs=49.9
Q ss_pred hhhhcchHHHHHHHhhccccceeecCCC-----CC-CCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 21 SSSLQVAPKIKERMMKSGSMMITYQPIH-----AL-PNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 21 ~kL~kVap~IKerM~~~Gs~MV~YqPl~-----~~-~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
+.+++++..|.+++..+|..+|++..+. ++ ..+||+|++||.+|.+|||.+|+|=.+
T Consensus 459 ~~~~~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~~~~ 521 (522)
T TIGR03799 459 ELLDRLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDEQRE 521 (522)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHHhhc
Confidence 4578899999999999999999999875 22 379999999999999999999998543
No 4
>PLN02880 tyrosine decarboxylase
Probab=97.90 E-value=1.2e-05 Score=64.74 Aligned_cols=58 Identities=7% Similarity=0.134 Sum_probs=51.8
Q ss_pred hhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 23 SLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 23 L~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+++++..|.++|..+|.++|++....++ .++|+++.||.+|.+|+|.+++.|.++++.
T Consensus 427 ~~~~n~~l~~~l~~~g~~~v~~t~~~g~-~~lR~~~~n~~tt~~di~~~~~~i~~~~~~ 484 (490)
T PLN02880 427 GNKLNHDLLDAVNSSGKIFISHTVLSGK-YVLRFAVGAPLTEERHVTAAWKVLQDEASK 484 (490)
T ss_pred HHHHHHHHHHHHHhCCCEEEEEEEECCE-EEEEEEecCCCCCHHHHHHHHHHHHHHHHH
Confidence 4556778999999999999999988764 599999999999999999999999998864
No 5
>cd06450 DOPA_deC_like DOPA decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.
Probab=95.86 E-value=0.018 Score=42.16 Aligned_cols=51 Identities=24% Similarity=0.444 Sum_probs=39.9
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.++|-..+...+.. .++++|+++.++..|.+|+|.+++.|+++
T Consensus 295 ~~~i~~~L~~~g~~~~~~~~~~-~~~~lRis~~~~~~t~~di~~l~~~l~~~ 345 (345)
T cd06450 295 NYDLSDRLNERGGWHVPATTLG-GPNVLRFVVTNPLTTRDDADALLEDIERA 345 (345)
T ss_pred HHHHHHHHHhcCCEEEEeeEEC-CeEEEEEEecCCCCCHHHHHHHHHHHHhC
Confidence 3468889999876666554433 46899999888878999999999999764
No 6
>PRK06290 aspartate aminotransferase; Provisional
Probab=92.21 E-value=0.33 Score=37.78 Aligned_cols=52 Identities=21% Similarity=0.325 Sum_probs=41.4
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+-.+.++|.++|...+- |..+.++|+|+.++.+..+.+++|.+++++.+.=.
T Consensus 353 ~~~~~~~Ll~~~~v~~~--p~~~~~~~lRi~~~~~~~~~~~~~~~~~~l~~~~~ 404 (410)
T PRK06290 353 AEEFSQYLIKEKLISTV--PWDDAGHFLRFSVTFEAKDEEEEDRILEEIKRRLS 404 (410)
T ss_pred HHHHHHHHHHhCCEEEE--CCccccCeEEEEEEcccccccchhHHHHHHHHHHh
Confidence 34677899998866542 55455689999999999999999999999987633
No 7
>KOG1359|consensus
Probab=91.12 E-value=0.55 Score=38.13 Aligned_cols=57 Identities=21% Similarity=0.351 Sum_probs=45.2
Q ss_pred cchHHHHHHHhhccccceeecCCCCCCCcceEeec-CCCCChhhHHHHHHHHHHhccc
Q psy2616 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQ-NSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 25 kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~-np~~t~~dmD~ll~eIerlG~d 81 (82)
+.|.+....|.++|-..|+|+|.--.++==|+-+. +.+-|++|+|.+|+...++|+-
T Consensus 355 ~lA~~~ad~lLk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr~ 412 (417)
T KOG1359|consen 355 RLASKMADELLKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGRF 412 (417)
T ss_pred HHHHHHHHHHHhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHHh
Confidence 34557789999999999999997655555555553 6778999999999999988863
No 8
>PF15217 TSC21: TSC21 family
Probab=86.40 E-value=0.3 Score=35.77 Aligned_cols=29 Identities=28% Similarity=0.513 Sum_probs=20.7
Q ss_pred hccccceeecCCCC-------------------CCCcceEeec-CCCCC
Q psy2616 36 KSGSMMITYQPIHA-------------------LPNFFRLVLQ-NSALD 64 (82)
Q Consensus 36 ~~Gs~MV~YqPl~~-------------------~~NFFR~V~~-np~~t 64 (82)
-..|.||+|||.+. ..+|+|.+-+ ||.++
T Consensus 17 YqSSyMvdykpygk~kysrvtpqEQ~Kld~QLr~kEfyrp~P~pnPkL~ 65 (180)
T PF15217_consen 17 YQSSYMVDYKPYGKHKYSRVTPQEQAKLDTQLRDKEFYRPIPSPNPKLE 65 (180)
T ss_pred hhhhceeeccccccccccccCHHHHHHHHHHhhhhhhcccCCCCCcccc
Confidence 35679999999862 2469998864 66554
No 9
>PRK05387 histidinol-phosphate aminotransferase; Provisional
Probab=86.31 E-value=2.5 Score=31.16 Aligned_cols=48 Identities=13% Similarity=0.403 Sum_probs=33.6
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.+++.++| ..|.+...+...+|||+.+. +.++++.+++.|.++-
T Consensus 304 ~~~~~~~l~~~g-i~v~~~~~~~~~~~iRis~~----~~~~~~~~~~~L~~~~ 351 (353)
T PRK05387 304 AAELAAKLRERG-IIVRHFNKPRIDQFLRITIG----TDEEMEALVDALKEIL 351 (353)
T ss_pred HHHHHHHHHHCC-EEEEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHHHh
Confidence 346778888888 45543322234689999875 4589999999988763
No 10
>KOG0628|consensus
Probab=85.54 E-value=1.2 Score=37.36 Aligned_cols=57 Identities=16% Similarity=0.239 Sum_probs=46.1
Q ss_pred hcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 24 LQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 24 ~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
++++..+-.|+..+|+.-+.-..+.+ .-|-|+++|+|.++.+|||+--++|......
T Consensus 415 N~~ne~Ll~~in~~g~i~l~~~~l~g-k~vlRf~V~s~~t~~~di~~a~~~I~~~a~~ 471 (511)
T KOG0628|consen 415 NEINEALLNRLNSSGRIHLVPASLHG-KFVLRFAVCSPLTNESDIDEAWKIIFEAADE 471 (511)
T ss_pred cHHHHHHHHHHHhcCcEEEEEeeecc-eEEEEEEecCCCCcHHHHHHHHHHHHHHHHH
Confidence 45677777899999987776665554 3577999999999999999999999887653
No 11
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=85.31 E-value=2.9 Score=30.39 Aligned_cols=51 Identities=18% Similarity=0.454 Sum_probs=35.1
Q ss_pred hHHHHHHHhhccccce---eecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMI---TYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV---~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.++|..+| ..+ +|.......+.+|+.+ +...|.+|+|.+++.|+.+|
T Consensus 296 ~~~~~~~L~~~g-I~~~~~~~~~~~~~~~~iRi~~-~~~~~~~~i~~~~~~l~~~~ 349 (349)
T cd06454 296 AVAFSDALLERG-IYVQAIRYPTVPRGTARLRISL-SAAHTKEDIDRLLEALKEVG 349 (349)
T ss_pred HHHHHHHHHhCC-ceEEEecCCccCCCCCeEEEEE-eCCCCHHHHHHHHHHHHHhC
Confidence 356778888887 444 2311112247899874 45578999999999999876
No 12
>KOG0634|consensus
Probab=85.18 E-value=1.1 Score=37.35 Aligned_cols=54 Identities=28% Similarity=0.423 Sum_probs=37.0
Q ss_pred hhhhcchHHHHHHHhhcccc-------ceeecCCCCCCC-cceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 21 SSSLQVAPKIKERMMKSGSM-------MITYQPIHALPN-FFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 21 ~kL~kVap~IKerM~~~Gs~-------MV~YqPl~~~~N-FFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+.+..+--.|+..+++.|-. ||+ |..++.+ |||+.++ ..+.|.+.+.|+|+|..
T Consensus 402 ~~i~q~~e~i~~~~vk~gV~~v~G~~F~v~--p~~s~~kiffRls~a-----~a~~e~l~~g~~rf~~~ 463 (472)
T KOG0634|consen 402 KSINQIEEIIFIKAVKNGVKLVCGSWFMVD--PESSWSKIFFRLSIA-----FAEPEKLDEGIERFGSV 463 (472)
T ss_pred cchHHHHHHHHHHHHHCCeEEecCceeEEc--CccCCCcceEEEEee-----cCCHHHHHHHHHHHHHH
Confidence 34455667888999999854 444 5556555 9999874 33455677888888753
No 13
>PRK13520 L-tyrosine decarboxylase; Provisional
Probab=84.41 E-value=2.9 Score=30.86 Aligned_cols=47 Identities=13% Similarity=0.439 Sum_probs=32.4
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
..+..+|.++| +.|.. ...++.+|+.+ .+..|++|||.+++.++++-
T Consensus 323 ~~v~~~L~~~g-i~v~~---~~~~~~iRis~-~~~~t~edi~~~~~~l~~~~ 369 (371)
T PRK13520 323 DEVREKLRERG-WRVSV---TRCPEALRIVC-MPHVTREHIENFLEDLKEVK 369 (371)
T ss_pred HHHHHHHHHCC-ceecc---CCCCCEEEEEE-ECCCCHHHHHHHHHHHHHHh
Confidence 34566666666 44432 12357899874 45789999999999998763
No 14
>PRK08153 histidinol-phosphate aminotransferase; Provisional
Probab=84.27 E-value=3.1 Score=31.50 Aligned_cols=47 Identities=13% Similarity=0.315 Sum_probs=33.9
Q ss_pred chHHHHHHHhhccccceeecCCC-CCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~-~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+.++|.+.| ..|.+ |.. ...++||+.+. +.++++.+++.+.++
T Consensus 315 ~a~~l~~~l~~~G-i~v~~-p~~~~~~~~iRis~~----~~~~~~~~~~al~~~ 362 (369)
T PRK08153 315 FARAVLDGLIARD-IFVRM-PGVAPLDRCIRVSCG----PDEELDLFAEALPEA 362 (369)
T ss_pred cHHHHHHHHHHCC-eEEee-CCCCCCCCeEEEecC----CHHHHHHHHHHHHHH
Confidence 4567888899999 55543 321 23479998865 589999999988765
No 15
>PRK05958 8-amino-7-oxononanoate synthase; Reviewed
Probab=83.72 E-value=3.8 Score=30.21 Aligned_cols=50 Identities=18% Similarity=0.342 Sum_probs=33.7
Q ss_pred hHHHHHHHhhcccccee-ecCC--CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMIT-YQPI--HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~-YqPl--~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.+.| ..|. +.+. +...|++|+.+ +...|++++|.+++.|+++
T Consensus 332 ~~~~~~~l~~~g-I~v~~~~~~~~~~~~~~lRis~-~~~~~~~~i~~~l~~l~~~ 384 (385)
T PRK05958 332 ALALAAALQEQG-FWVGAIRPPTVPAGTSRLRITL-TAAHTEADIDRLLEALAEA 384 (385)
T ss_pred HHHHHHHHHHCC-ceEecccCCCCCCCCceEEEEe-cCCCCHHHHHHHHHHHHhc
Confidence 346788888888 5553 2221 12248999774 2346899999999998764
No 16
>PRK09792 4-aminobutyrate transaminase; Provisional
Probab=82.75 E-value=3.9 Score=32.06 Aligned_cols=50 Identities=18% Similarity=0.339 Sum_probs=36.7
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.+..+..+|.++| +++. |.+..+|.+|+.. +-..|++++|..++-++++=
T Consensus 370 ~~~~l~~~~~~~G-v~i~--~~g~~~~~irl~P-~l~i~~~ei~~~~~~l~~~l 419 (421)
T PRK09792 370 IAQKIQQRALAQG-LLLL--TCGAYGNVIRFLY-PLTIPDAQFDAAMKILQDAL 419 (421)
T ss_pred HHHHHHHHHHHCC-cEEe--ecCCCCCEEEEeC-CCcCCHHHHHHHHHHHHHHH
Confidence 4667888999999 5553 4344579999763 22478999999999888763
No 17
>PRK02731 histidinol-phosphate aminotransferase; Validated
Probab=82.02 E-value=4.7 Score=29.99 Aligned_cols=47 Identities=17% Similarity=0.386 Sum_probs=32.2
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.+.|=........ +.++++|+.++ +.+++|.+++.++++
T Consensus 317 ~~~~~~~L~~~gI~v~~~~~~-~~~~~iRis~~----~~~e~~~l~~aL~~~ 363 (367)
T PRK02731 317 AAEAYQALLKRGVIVRPVAGY-GLPNALRITIG----TEEENRRFLAALKEF 363 (367)
T ss_pred HHHHHHHHHHCCEEEEeCCCC-CCCCeEEEecC----CHHHHHHHHHHHHHH
Confidence 456778888888333222211 23589998864 678999999999875
No 18
>TIGR01788 Glu-decarb-GAD glutamate decarboxylase. This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).
Probab=81.51 E-value=3.2 Score=33.27 Aligned_cols=53 Identities=15% Similarity=0.194 Sum_probs=40.3
Q ss_pred HHHHHHHhhccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
..|.++|.++|-....|+... +..-|+|++ .+|.++.+.+|.+|+.|..+...
T Consensus 375 ~~l~~~L~~~G~~~~~~~~p~~~~~~~~lR~~-~~~~~~~~~~~~~~~~~~~~~~~ 429 (431)
T TIGR01788 375 YDLSHRLRERGWIVPAYTLPKNAEDIVVMRIV-VREGFSRDLAELLIEDIEAALAY 429 (431)
T ss_pred HHHHHHHHHCCCcccCCCCCCccCCeEEEEEE-ecCCCCHHHHHHHHHHHHHHHHh
Confidence 478899999996666666532 223678987 48888999999999999887554
No 19
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=81.46 E-value=1.5 Score=35.22 Aligned_cols=48 Identities=19% Similarity=0.276 Sum_probs=38.4
Q ss_pred HHhhccccceeecCCCC-----CCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 33 RMMKSGSMMITYQPIHA-----LPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 33 rM~~~Gs~MV~YqPl~~-----~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|.++.|++|.+++|..+ ..++.|+.+.==.-|.++||++.+-|.++-+
T Consensus 355 ~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~ 407 (431)
T cd00617 355 RAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE 407 (431)
T ss_pred eEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh
Confidence 34677999999999875 3599999874334789999999999988754
No 20
>PRK09105 putative aminotransferase; Provisional
Probab=81.21 E-value=4.5 Score=30.84 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=34.6
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.++|.++| ..|+... +..++|+|+.++ +.+++|.+++.++++-
T Consensus 322 ~~~l~~~L~~~g-I~v~~~~-~~~~~~~Ris~~----~~~~~~~l~~al~~~~ 368 (370)
T PRK09105 322 AKAVADAMAKQG-VFIGRSW-PIWPNWVRVTVG----SEEEMAAFRSAFAKVM 368 (370)
T ss_pred HHHHHHHHHHCC-cEEecCC-CCCCCeEEEEcC----CHHHHHHHHHHHHHHh
Confidence 457888998887 6675432 234689998876 4678999999998764
No 21
>PRK03158 histidinol-phosphate aminotransferase; Provisional
Probab=81.01 E-value=4.1 Score=30.31 Aligned_cols=54 Identities=17% Similarity=0.246 Sum_probs=35.4
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++..-+..+.+++.+.|-........ +.++|+|+.++ +.+++|.+++.|+++
T Consensus 305 ~~~~~~~~~~~~~~l~~~gv~v~~g~~f-~~~~~iRi~~~----~~~~~~~l~~al~~~ 358 (359)
T PRK03158 305 FVDTGRDANELFEALLKKGYIVRSGAAL-GFPTGVRITIG----LKEQNDKIIELLKEL 358 (359)
T ss_pred EEECCCCHHHHHHHHHHCCeEEeeCCCC-CCCCeEEEecC----CHHHHHHHHHHHHHh
Confidence 4444333567778888888332221111 34689998865 788999999999875
No 22
>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.
Probab=81.00 E-value=5.5 Score=29.33 Aligned_cols=50 Identities=16% Similarity=0.178 Sum_probs=33.8
Q ss_pred hHHHHHHHhhc-cccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~-Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.++ | ..+..-.....++.+|+. ..+..|++|||.+++.+.++
T Consensus 304 ~~~~~~~L~~~~g-I~~~~g~~~~~~~~iRis-~~~~~~~e~v~~~~~~l~~~ 354 (356)
T cd06451 304 GDEVVRRLMKRYN-IEIAGGLGPTAGKVFRIG-HMGEATREDVLGVLSALEEA 354 (356)
T ss_pred HHHHHHHHHHhCC-EEEecccccccCCEEEEe-cCCCCCHHHHHHHHHHHHHH
Confidence 35677888887 7 333211011346799977 44568999999999998765
No 23
>PRK04635 histidinol-phosphate aminotransferase; Provisional
Probab=80.68 E-value=5.6 Score=29.81 Aligned_cols=46 Identities=15% Similarity=0.257 Sum_probs=32.5
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
+..+++++.+.| ..|........++++|+.++ +.+++|.+++-+++
T Consensus 306 ~~~~~~~l~~~g-v~v~~~~~~~~~~~lRis~~----~~e~~~~l~~al~~ 351 (354)
T PRK04635 306 VDAVFKALWDAG-IVARAYKDPRLANCIRFSFS----NRAETDKLIGLIRN 351 (354)
T ss_pred HHHHHHHHHHCC-EEEEECCCCCCCCeEEEEeC----CHHHHHHHHHHHHH
Confidence 446778888888 55543222334689998865 57999999998865
No 24
>PRK13392 5-aminolevulinate synthase; Provisional
Probab=80.51 E-value=5.7 Score=30.39 Aligned_cols=52 Identities=19% Similarity=0.333 Sum_probs=35.2
Q ss_pred HHHHHHHh-hccccceee-c-CC-CCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMM-KSGSMMITY-Q-PI-HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~-~~Gs~MV~Y-q-Pl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
..+.++|. ++| ..|.. . |. +...+.+|+.+ +...|++|+|.+++.|+++.++
T Consensus 342 ~~~~~~L~~~~G-I~v~~~~~p~~~~~~~~lRis~-~~~~t~edid~l~~aL~~~~~~ 397 (410)
T PRK13392 342 KAISDRLMSEHG-IYIQPINYPTVPRGTERLRITP-TPLHDDEDIDALVAALVAIWDR 397 (410)
T ss_pred HHHHHHHHHhCC-EEEeeeCCCCCCCCCceEEEEE-CCCCCHHHHHHHHHHHHHHHHH
Confidence 46778886 568 44432 1 21 22237899774 3467899999999999987654
No 25
>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.
Probab=79.99 E-value=4.7 Score=29.82 Aligned_cols=46 Identities=11% Similarity=0.478 Sum_probs=31.8
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.++|-.+| ..|..- ..++.+|+.+. +..|++|+|.+++.|+++
T Consensus 328 ~~v~~~L~~~g-i~v~~~---~~~~~iRis~~-~~~t~edid~l~~~L~~~ 373 (373)
T TIGR03812 328 EEVRKKLRDRG-WYVSVT---RCPKALRIVVM-PHVTREHIEEFLEDLKEI 373 (373)
T ss_pred HHHHHHHHHCC-ceeccC---CCCCEEEEEEE-CCCCHHHHHHHHHHHhhC
Confidence 35667777776 444332 12578998754 457999999999999764
No 26
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=79.27 E-value=4.3 Score=28.89 Aligned_cols=47 Identities=9% Similarity=0.194 Sum_probs=31.6
Q ss_pred hHHHHHHHhhccccceeec-CCCCCCCcceEeecCCCCChhhHHHHHHHHH
Q psy2616 27 APKIKERMMKSGSMMITYQ-PIHALPNFFRLVLQNSALDHSDMDYFIDEIE 76 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~Yq-Pl~~~~NFFR~V~~np~~t~~dmD~ll~eIe 76 (82)
+..+.+++.+.|-.+..+. +....++.+|+.+.++ ++|+|.+++.|+
T Consensus 302 ~~~~~~~l~~~gi~i~~~~~~~~~~~~~iRi~~~~~---~~~i~~~~~al~ 349 (350)
T cd00609 302 EEFLERLLLEAGVVVRPGSAFGEGGEGFVRLSFATP---EEELEEALERLA 349 (350)
T ss_pred HHHHHHHHHhCCEEEecccccccCCCCeEEEEeeCC---HHHHHHHHHHhh
Confidence 4455566666685544321 1113568999998777 999999999886
No 27
>PRK13393 5-aminolevulinate synthase; Provisional
Probab=78.79 E-value=6.7 Score=30.03 Aligned_cols=52 Identities=8% Similarity=0.225 Sum_probs=34.9
Q ss_pred HHHHHHHhhc-cccceeecCC---CCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMMKS-GSMMITYQPI---HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~~~-Gs~MV~YqPl---~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
-.+.+++.++ | +.|..... +...+..|+. .+...|++|+|.+++.|+++..+
T Consensus 341 ~~l~~~L~~~~G-i~v~~~~~p~~p~g~~~iRis-~~~~~t~edid~l~~~l~~~~~~ 396 (406)
T PRK13393 341 KQISDELLDRYG-IYVQPINYPTVPRGTERLRIT-PSPLHTDADIEHLVQALSEIWAR 396 (406)
T ss_pred HHHHHHHHHhCC-EEEEeECCCCCCCCCceEEEE-ECCCCCHHHHHHHHHHHHHHHHh
Confidence 4577788874 7 55543221 1123789976 34457899999999999887543
No 28
>PRK07505 hypothetical protein; Provisional
Probab=78.69 E-value=7.4 Score=29.74 Aligned_cols=50 Identities=8% Similarity=0.183 Sum_probs=34.2
Q ss_pred hHHHHHHHhhccccceeecC---CCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQP---IHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqP---l~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+-.+.++|.++| +.|.... .+...+.+|+.+ ....|++++|.+++.|+++
T Consensus 344 ~~~~~~~l~~~G-i~v~~~~~p~~~~~~~~lRi~~-~~~~t~eei~~~~~~l~~~ 396 (402)
T PRK07505 344 AIKAAKQLLDRG-FYTSPVFFPVVAKGRAGLRIMF-RASHTNDEIKRLCSLLKEI 396 (402)
T ss_pred HHHHHHHHHHCC-CeEeeecCCCCCCCCceEEEec-CccCCHHHHHHHHHHHHHH
Confidence 346788888998 5554321 122237899763 3347999999999999875
No 29
>TIGR00858 bioF 8-amino-7-oxononanoate synthase. This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.
Probab=78.60 E-value=5.2 Score=29.03 Aligned_cols=47 Identities=21% Similarity=0.352 Sum_probs=31.2
Q ss_pred hHHHHHHHhhcccccee---ecCCCCCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 27 APKIKERMMKSGSMMIT---YQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~---YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
+..+.++|.+.| ..|. +...+..++++|+.+. ...|.+|+|.+++.|
T Consensus 310 ~~~~~~~l~~~g-I~v~~~~~~~~~~~~~~iRis~~-~~~~~~~i~~~l~~l 359 (360)
T TIGR00858 310 ALALAEELQQQG-IFVGAIRPPTVPAGTSRLRLTLS-AAHTPGDIDRLAEAL 359 (360)
T ss_pred HHHHHHHHHHCC-eeEeeeCCCCCCCCCceEEEEEc-CCCCHHHHHHHHHhh
Confidence 446788888888 4442 2111223579998753 346899999999876
No 30
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=78.30 E-value=5 Score=30.38 Aligned_cols=47 Identities=21% Similarity=0.439 Sum_probs=34.9
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
.+.++|.++|=+.+. | +..++||+.+. ..|.+|+|.+++.++++.+.
T Consensus 322 ~~~~~L~e~GI~~ir--~--~~~~~iRis~~--~~t~e~i~~l~~~L~~~~~~ 368 (370)
T TIGR02539 322 FLYEELKKRGIHGIR--S--GQTKYFKLSVY--GLTKEQVEYVVDSFEEIVEE 368 (370)
T ss_pred HHHHHHHhCCCcccc--C--CcceEEEEEec--CCCHHHHHHHHHHHHHHHHh
Confidence 578889889843243 2 33579998863 46999999999999987654
No 31
>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase. This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.
Probab=78.27 E-value=7 Score=28.36 Aligned_cols=47 Identities=17% Similarity=0.380 Sum_probs=32.2
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+|.++| ..|..--. ...+++|+.+ ....|.+|||.+++.|.++
T Consensus 308 ~~~~~l~~~g-i~i~~~~~-~~~~~iRis~-~~~~~~~~i~~~~~~l~~~ 354 (355)
T TIGR03301 308 DFYQELKERG-FVIYPGKL-TLADTFRIGT-IGEIDAADIERLLEAIKDA 354 (355)
T ss_pred HHHHHHHHCC-EEEECCcc-ccccEEEEec-CCCCCHHHHHHHHHHHHhh
Confidence 6778888888 55543211 1137899763 3346899999999999764
No 32
>PRK08088 4-aminobutyrate aminotransferase; Validated
Probab=77.81 E-value=7.6 Score=30.25 Aligned_cols=49 Identities=12% Similarity=0.236 Sum_probs=36.0
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+..++.++|-+ +.|....+|.+|+.+ +...|.+++|..|+.++++
T Consensus 372 ~~~~l~~~~~~~Gv~---~~~~~~~~~~iRl~~-~~~~t~~ei~~~i~~l~~~ 420 (425)
T PRK08088 372 LTAQIVARARDKGLI---LLSCGPYYNVLRILV-PLTIEDAQIRQGLEIIAQC 420 (425)
T ss_pred HHHHHHHHHHhCCCE---EecCCCCCCEEEEEC-CCCcCHHHHHHHHHHHHHH
Confidence 366788999999933 235444579999774 3357899999999988775
No 33
>PRK14807 histidinol-phosphate aminotransferase; Provisional
Probab=75.86 E-value=8.7 Score=28.73 Aligned_cols=54 Identities=15% Similarity=0.318 Sum_probs=35.2
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++. -+..+.+.+.+.|-....+....+.+++||+.+++ .+++|.+++-|+++
T Consensus 296 ~i~~~-~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~~~----~~~~~~l~~~l~~~ 349 (351)
T PRK14807 296 LVKFK-DADYVYQGLLERGILVRDFSKVEGLEGALRITVSS----CEANDYLINGLKEL 349 (351)
T ss_pred EEEcC-CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEcCC----HHHHHHHHHHHHHh
Confidence 44443 24577888888884433333222346899998764 56788999888764
No 34
>PLN03026 histidinol-phosphate aminotransferase; Provisional
Probab=75.03 E-value=8.7 Score=29.33 Aligned_cols=47 Identities=23% Similarity=0.425 Sum_probs=33.6
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.+.|= .|.+-...+..+|+|+.+. +.++++.+++.++++
T Consensus 333 ~~~~~~~l~~~gI-~v~~~~~~~~~~~lRis~~----~~~~~~~l~~al~~~ 379 (380)
T PLN03026 333 AKKLKEDLAKMGV-MVRHYNSKELKGYIRVSVG----KPEHTDALMEALKQL 379 (380)
T ss_pred HHHHHHHHHHCCe-EEEECCCCCCCCEEEEecC----CHHHHHHHHHHHHHh
Confidence 4568888998884 4443222334679998876 567899999998875
No 35
>PRK06058 4-aminobutyrate aminotransferase; Provisional
Probab=74.67 E-value=9 Score=30.26 Aligned_cols=50 Identities=12% Similarity=0.157 Sum_probs=35.3
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
++-.+.+++.++| +++. |.+..+|.+|+. -.-..|++++|.+++-+++.=
T Consensus 391 ~~~~l~~~~~~~G-v~~~--~~~~~~~~lr~~-Ppl~~t~~~i~~~~~~l~~~l 440 (443)
T PRK06058 391 LTKALAAAAHAAG-VIVL--TCGTYGNVIRLL-PPLVIGDELLREGLDVLEAAL 440 (443)
T ss_pred HHHHHHHHHHHCC-eEEe--ccCCCCCEEEEE-CCCccCHHHHHHHHHHHHHHH
Confidence 4566778889999 4442 333346888865 223588999999999998763
No 36
>PRK04781 histidinol-phosphate aminotransferase; Provisional
Probab=74.29 E-value=9.9 Score=28.78 Aligned_cols=54 Identities=13% Similarity=0.172 Sum_probs=36.2
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++.. +..+.++|.++|=.......-++.++|+|+.+. +.+++|.+++.++++
T Consensus 307 ~~~~~~-~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ris~~----~~~~~~~l~~al~~~ 360 (364)
T PRK04781 307 LVRFDD-AEAAFQALLAAGVVVRDQRAAPRLSDALRITLG----TPEQNDRVLAALQRT 360 (364)
T ss_pred EEEcCC-HHHHHHHHHHCCeEEeeCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHH
Confidence 444432 456778888888443343222344789998875 578899999999876
No 37
>PLN02721 threonine aldolase
Probab=73.95 E-value=11 Score=27.39 Aligned_cols=49 Identities=18% Similarity=0.344 Sum_probs=35.8
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+..+.++|.+.| ..|. |. ..+++|+.+ +...+++||+.+++.++++...
T Consensus 304 ~~~~~~~L~~~g-i~v~--~~--~~~~lR~~~-~~~~~~~~i~~~~~~l~~~~~~ 352 (353)
T PLN02721 304 AEKLCKSLEEHG-VLLM--PG--NSSRIRVVT-HHQISDSDVQYTLSCFQQAALT 352 (353)
T ss_pred HHHHHHHHHhCC-cEEe--cC--CCceEEEEe-cCcCCHHHHHHHHHHHHHHhhc
Confidence 557888998888 4443 32 256889774 4567999999999999887543
No 38
>PRK06777 4-aminobutyrate aminotransferase; Provisional
Probab=73.73 E-value=9.4 Score=29.93 Aligned_cols=47 Identities=11% Similarity=0.309 Sum_probs=34.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCC--CCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNS--ALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np--~~t~~dmD~ll~eIerl 78 (82)
++-.+..++.++| +++ .|.+..+|.+|+. | ..|.+++|..++-|++.
T Consensus 370 ~~~~l~~~~~~~G-v~i--~~~~~~g~~lr~~---ppl~i~~~~i~~~~~~l~~~ 418 (421)
T PRK06777 370 FTRQYQRQALEEG-LLL--LSCGVHGNVIRFL---YPLTIPDAQFSKALNILTRL 418 (421)
T ss_pred HHHHHHHHHHhCC-eEE--eecCCCCCEEEEe---CCCCCCHHHHHHHHHHHHHH
Confidence 4556777788999 444 3444446888876 5 58999999999988764
No 39
>TIGR03687 pupylate_cterm ubiquitin-like protein Pup. Members of this protein family are Pup, a small protein whose ligation to target proteins steers them toward degradation. This protein family occurs in a number of bacteria, especially Actinobacteria such as Mycobacterium tuberculosis, that possess an archeal-type proteasome. All members of this protein family known during model construction end with the C-terminal motif [FY][VI]QKGG[QE]. Ligation is thought to occur between the C-terminal COOH of Pup and an epsilon-amino group of a Lys on the target protein. The N-terminal half of this protein is poorly conserved and not represented in the seed alignment.
Probab=73.71 E-value=2.8 Score=23.28 Aligned_cols=13 Identities=31% Similarity=0.626 Sum_probs=11.4
Q ss_pred hhHHHHHHHHHHh
Q psy2616 66 SDMDYFIDEIERL 78 (82)
Q Consensus 66 ~dmD~ll~eIerl 78 (82)
+++|.+||||+.+
T Consensus 3 ~~~D~lLDeId~v 15 (33)
T TIGR03687 3 EGVDDLLDEIDGV 15 (33)
T ss_pred chHHHHHHHHHHH
Confidence 5799999999876
No 40
>PRK01688 histidinol-phosphate aminotransferase; Provisional
Probab=73.09 E-value=7.4 Score=29.25 Aligned_cols=45 Identities=13% Similarity=0.298 Sum_probs=31.2
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
+..+.++|.++|-+...+....+..+++|+.+. +.+++|.+++.|
T Consensus 306 ~~~l~~~L~~~gi~vr~~~~~~~~~~~iRis~~----~~~e~~~l~~al 350 (351)
T PRK01688 306 SSAVFKSLWDQGIILRDQNKQPGLSNCLRITIG----TREECQRVIDAL 350 (351)
T ss_pred HHHHHHHHHHCCeEEEECCCcCCCCCeEEEeCC----CHHHHHHHHHhh
Confidence 467888999999433333222244689998865 569999999876
No 41
>PRK07179 hypothetical protein; Provisional
Probab=72.69 E-value=13 Score=28.37 Aligned_cols=50 Identities=20% Similarity=0.362 Sum_probs=33.5
Q ss_pred HHHHHHHhhcccccee-e-cCCC-CCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 28 PKIKERMMKSGSMMIT-Y-QPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~-Y-qPl~-~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
..+.+.+.++| +.++ | .|.. ...+++|+.+ +...|++|+|.+++.++++-
T Consensus 344 ~~~~~~L~~~G-I~~~~~~~p~~~~~~~~lRis~-~~~~t~edi~~~~~~l~~~~ 396 (407)
T PRK07179 344 EVLRDALEERN-VFGAVFCAPATPKNRNLIRLSL-NADLTASDLDRVLEVCREAR 396 (407)
T ss_pred HHHHHHHHHCC-ceEeeecCCCCCCCCceEEEEE-CCCCCHHHHHHHHHHHHHHH
Confidence 34666777788 3333 2 2322 2358999875 45579999999999988763
No 42
>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase. This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.
Probab=72.65 E-value=13 Score=28.35 Aligned_cols=52 Identities=12% Similarity=0.215 Sum_probs=34.1
Q ss_pred hHHHHHHHhhc-cccceeec--CC-CCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 27 APKIKERMMKS-GSMMITYQ--PI-HALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 27 ap~IKerM~~~-Gs~MV~Yq--Pl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+..+.++|..+ | ..|... |- +...+..|+.+ +...|++|+|.+++.++++.+
T Consensus 340 a~~~~~~L~~~~G-i~v~~~~~p~~~~g~~~lRis~-~~~~t~edi~~~~~~l~~~~~ 395 (402)
T TIGR01821 340 CKKVSDLLLNKHG-IYVQPINYPTVPRGTERLRITP-TPAHTDKMIDDLVEALLLVWD 395 (402)
T ss_pred HHHHHHHHHhcCC-EEEEeECCCCCCCCCceEEEEe-CCCCCHHHHHHHHHHHHHHHH
Confidence 44677777755 7 554332 21 12237889763 446789999999999988754
No 43
>PRK03317 histidinol-phosphate aminotransferase; Provisional
Probab=72.63 E-value=9.8 Score=28.51 Aligned_cols=44 Identities=11% Similarity=0.405 Sum_probs=32.2
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+.|.++|-+...+ +.+++||+.++ +.+++|.+++.++++
T Consensus 318 ~~~~~~~l~~~Gv~v~~~----~~~~~iRi~~~----~~~~~~~~~~~l~~~ 361 (368)
T PRK03317 318 RHAVWQGLLDRGVLIRDV----GIPGWLRVTIG----TPEENDAFLAALAEV 361 (368)
T ss_pred HHHHHHHHHHCCEEEEeC----CCCCeEEEecC----CHHHHHHHHHHHHHH
Confidence 456778888999444332 23689998865 567899999998775
No 44
>PRK06541 hypothetical protein; Provisional
Probab=72.42 E-value=11 Score=30.13 Aligned_cols=45 Identities=7% Similarity=0.090 Sum_probs=33.1
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHhc
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERLG 79 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerlG 79 (82)
.+..+|.++| +.+...|. ..|..|+. |. .|++|+|.+++-+++.-
T Consensus 407 ~~~~~l~~~G-i~~~~~~~--g~~~lrl~---Ppl~~t~~~id~~~~~l~~~l 453 (460)
T PRK06541 407 FLSPALFEAG-LYCRADDR--GDPVVQLA---PPLISGQEEFDEIEQILRSVL 453 (460)
T ss_pred HHHHHHHhCC-eEEEecCC--CCCEEEEE---CCCCCCHHHHHHHHHHHHHHH
Confidence 5678899999 55654332 24788854 65 88999999999988753
No 45
>cd06453 SufS_like Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.
Probab=71.98 E-value=7.9 Score=28.70 Aligned_cols=46 Identities=9% Similarity=0.195 Sum_probs=31.9
Q ss_pred HHHHHHHhhccccceeecCC--------CCCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 28 PKIKERMMKSGSMMITYQPI--------HALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl--------~~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
..|.++|...| ..++..+. .+.+++.|+.+ ..-.|++|||.+++.|
T Consensus 320 ~~i~~~l~~~g-i~i~~g~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~~~~~l 373 (373)
T cd06453 320 HDVATILDQYG-IAVRAGHHCAQPLMRRLGVPGTVRASF-GLYNTEEEIDALVEAL 373 (373)
T ss_pred HHHHHHHHHCC-EEeccCccchhHHHHHhCCCCeEEEEe-cCCCCHHHHHHHHhhC
Confidence 57888888888 55643211 12357999774 4668999999998753
No 46
>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase. This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.
Probab=71.04 E-value=16 Score=27.35 Aligned_cols=53 Identities=19% Similarity=0.498 Sum_probs=34.8
Q ss_pred hHHHHHHHhhcccccee-e-cCCCCC-CCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 27 APKIKERMMKSGSMMIT-Y-QPIHAL-PNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~-Y-qPl~~~-~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+..+.++|.++| ..|. + .|.... ...+|+.+ +...|.+|+|.+++.|.++++.
T Consensus 334 ~~~l~~~L~~~g-I~v~~~~~~~~~~~~~~iRis~-~~~~t~edi~~~~~~l~~~~~~ 389 (393)
T TIGR01822 334 AQRFARRLLEEG-IYVTGFFYPVVPKGQARIRVQI-SAAHTEEQLDRAVEAFTRIGRE 389 (393)
T ss_pred HHHHHHHHHHCC-eeEeeeCCCCCCCCCceEEEEE-CCCCCHHHHHHHHHHHHHHHHH
Confidence 346778888888 4443 2 232211 23567653 4567899999999999988764
No 47
>PRK05166 histidinol-phosphate aminotransferase; Provisional
Probab=71.00 E-value=11 Score=28.38 Aligned_cols=55 Identities=13% Similarity=0.342 Sum_probs=35.5
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
|-++..-+..+.+++.++|=...... ..+..+|||+.++ +.++++.+++.++++.
T Consensus 315 ~~~~~~~~~~l~~~l~~~gi~v~p~~-~~~~~~~iRi~~~----~~~~~~~l~~~l~~i~ 369 (371)
T PRK05166 315 FFDARRPASAVAEALLRQGVIVKPWK-QPGFETFIRVSIG----SPEENDHFVAALDKVL 369 (371)
T ss_pred EEeCCCCHHHHHHHHHHCCeEEecCC-CCCCCCeEEEEcC----CHHHHHHHHHHHHHHh
Confidence 43443345678888888883332221 1234789998876 4667888888888764
No 48
>PRK08117 4-aminobutyrate aminotransferase; Provisional
Probab=70.90 E-value=12 Score=29.18 Aligned_cols=50 Identities=14% Similarity=0.250 Sum_probs=34.4
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.+-.+..++.+.|-+.. |.+..+|+.|+. .+-..|++++|.+++-+++.-
T Consensus 378 ~~~~~~~~l~~~Gv~~~---~~g~~~~~lRl~-p~~~~t~~~i~~~~~~l~~~l 427 (433)
T PRK08117 378 AVEKILDKCLEKGLLFY---LCGNAGNVLRMI-PPLTVTKEEIDEGLDILDEAL 427 (433)
T ss_pred HHHHHHHHHHHCCCEEe---ecCCCCCEEEEe-CCccCCHHHHHHHHHHHHHHH
Confidence 34456688889994332 333346888865 234689999999999998763
No 49
>PRK07483 hypothetical protein; Provisional
Probab=70.68 E-value=12 Score=29.71 Aligned_cols=49 Identities=14% Similarity=0.242 Sum_probs=33.6
Q ss_pred chHHHHHHHhhccccceeec---CCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQ---PIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~Yq---Pl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
++..+..++.++| +++.-. +.+..+|-+|+. |. .|++++|.+++-+++.
T Consensus 381 ~~~~~~~~~~~~G-ll~~~~~~~~~~~~~~~l~~~---PpL~it~~eid~~~~~l~~~ 434 (443)
T PRK07483 381 LHARIKREAMARG-LMVYPMGGTIDGVRGDHVLLA---PPFIITAAQIDEIVERLGDA 434 (443)
T ss_pred HHHHHHHHHHHCC-cEEEecCccccCCCCCEEEEE---CCCCCCHHHHHHHHHHHHHH
Confidence 4567889999999 444321 112336777754 53 7899999999988764
No 50
>cd00610 OAT_like Acetyl ornithine aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.
Probab=70.61 E-value=15 Score=27.61 Aligned_cols=46 Identities=22% Similarity=0.399 Sum_probs=33.4
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.++| .. ..|.+ ++.+|+.+ +...|.+|+|.+++.|+++
T Consensus 367 ~~~~~~~l~~~g-v~--v~~~~--~~~lR~~~-~~~~t~~~i~~~~~~l~~~ 412 (413)
T cd00610 367 AAKIIKAALERG-LL--LRPSG--GNVIRLLP-PLIITEEEIDEGLDALDEA 412 (413)
T ss_pred HHHHHHHHHHCC-eE--EeecC--CCEEEEEC-CCcCCHHHHHHHHHHHHHh
Confidence 456778888998 33 33432 68899764 4557899999999998764
No 51
>PRK05937 8-amino-7-oxononanoate synthase; Provisional
Probab=69.86 E-value=17 Score=27.46 Aligned_cols=48 Identities=8% Similarity=0.250 Sum_probs=33.3
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.+.|.++| +.|+....+ .+...|+. .+...|++|+|.+++.|.++
T Consensus 300 ~~~~~~L~~~g-i~v~~~~~~-~~~~iRis-~~~~~t~edid~l~~~L~~~ 347 (370)
T PRK05937 300 QELYSKLVETG-IRVGVVCFP-TGPFLRVN-LHAFNTEDEVDILVSVLATY 347 (370)
T ss_pred HHHHHHHHHCC-eeEEeeCCC-CCCEEEEE-cCCCCCHHHHHHHHHHHHHH
Confidence 35667777788 677643222 23478976 45668999999999998665
No 52
>PRK06917 hypothetical protein; Provisional
Probab=69.13 E-value=14 Score=29.41 Aligned_cols=49 Identities=12% Similarity=0.127 Sum_probs=33.7
Q ss_pred chHHHHHHHhhccccceee---cCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITY---QPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~Y---qPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
++..+..+|.++| +++.. .+.+..+|-.| .+|. .|++|+|.+++-+++.
T Consensus 381 ~~~~~~~~~~~~G-vl~~~~~~~~~g~~~~~i~---l~Ppl~it~~eid~~~~~l~~~ 434 (447)
T PRK06917 381 VASELISVAAKNG-LLLYPAVAGQDGKEGDAVI---IAPPMTITYSELDELLSIFAKS 434 (447)
T ss_pred HHHHHHHHHHhCC-cEEEecccccCCCCCCEEE---EECCCcCCHHHHHHHHHHHHHH
Confidence 4567888999999 55532 22233355444 4576 8899999999988765
No 53
>KOG0042|consensus
Probab=68.41 E-value=4.3 Score=35.18 Aligned_cols=21 Identities=14% Similarity=0.482 Sum_probs=18.3
Q ss_pred eecCCCCChhhHHHHHHHHHH
Q psy2616 57 VLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 57 V~~np~~t~~dmD~ll~eIer 77 (82)
|-.||.+|++|+.|+|+||..
T Consensus 354 v~~~P~PtE~dIqfIL~ev~~ 374 (680)
T KOG0042|consen 354 VTHSPTPTEDDIQFILKEVQH 374 (680)
T ss_pred CCCCCCCCHHHHHHHHHHHHH
Confidence 336999999999999999975
No 54
>PRK07908 hypothetical protein; Provisional
Probab=68.01 E-value=11 Score=27.95 Aligned_cols=54 Identities=11% Similarity=0.302 Sum_probs=33.9
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCC-CCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~-~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++.. +..+.+.+.+.|-........+. .+++||+.+. +.+++|.+++.++++
T Consensus 290 ~~~~~~-~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~~----~~~~~~~l~~al~~~ 344 (349)
T PRK07908 290 LVRVPD-AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAVR----PRAEVPVLVQALAEI 344 (349)
T ss_pred EEECCc-HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEeC----CCccHHHHHHHHHHH
Confidence 334433 45677777777833332211112 3689999874 567899999988875
No 55
>PRK00950 histidinol-phosphate aminotransferase; Validated
Probab=67.93 E-value=17 Score=26.92 Aligned_cols=48 Identities=13% Similarity=0.313 Sum_probs=32.0
Q ss_pred hHHHHHHHhhccccceeecCC-CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.+.|-....-... ....+++|+.+. +.++++.+++.|+++
T Consensus 311 ~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~----~~~~~~~l~~~L~~i 359 (361)
T PRK00950 311 AKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG----TFEENERFLEILKEI 359 (361)
T ss_pred HHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC----CHHHHHHHHHHHHHH
Confidence 567788888888332221111 123579998875 567899999999875
No 56
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=67.93 E-value=4.7 Score=33.21 Aligned_cols=48 Identities=21% Similarity=0.270 Sum_probs=38.8
Q ss_pred HHhhccccceeecCCCCCC-----CcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 33 RMMKSGSMMITYQPIHALP-----NFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 33 rM~~~Gs~MV~YqPl~~~~-----NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|-++.||+|.|..|..+.. ++-|+.+.-=.-|.+.||++.+-+..+-+
T Consensus 373 r~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 425 (450)
T TIGR02618 373 RSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYK 425 (450)
T ss_pred cEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 6688999999999986543 78898873335789999999999988754
No 57
>PLN02483 serine palmitoyltransferase
Probab=67.76 E-value=15 Score=29.57 Aligned_cols=53 Identities=13% Similarity=0.253 Sum_probs=34.5
Q ss_pred HHHHHHHhhccccce--eecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMMKSGSMMI--TYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~~~Gs~MV--~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+.+.++|.++|=..+ +|...+......|+.+ +...|++|+|.+++.|+++++.
T Consensus 412 ~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~i-sa~~t~edId~~l~~L~~~~~~ 466 (489)
T PLN02483 412 PAFSRECLKQNVAVVVVGFPATPLLLARARICI-SASHSREDLIKALEVISEVGDL 466 (489)
T ss_pred HHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEe-CCCCCHHHHHHHHHHHHHHHHH
Confidence 456677888884443 2210112235788764 3457899999999999988654
No 58
>TIGR01364 serC_1 phosphoserine aminotransferase. This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).
Probab=66.66 E-value=16 Score=28.02 Aligned_cols=49 Identities=8% Similarity=0.144 Sum_probs=34.2
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
..+...+..+|- +.|..+. ...-||+.+ -+-.|.+|+|.+++.|+++.+
T Consensus 299 ~~~~~~~~~~Gi--~~~~~~~-~~g~vRvS~-~~~nt~edid~l~~al~~~~~ 347 (349)
T TIGR01364 299 KRFLKEAEERGL--VSLKGHR-SVGGMRASI-YNAMPLEGVQALVDFMKEFQK 347 (349)
T ss_pred HHHHHHHHHCCC--cccCCcc-ccCeeEEEC-cCCCCHHHHHHHHHHHHHHHH
Confidence 344457777884 4454433 235799774 667899999999999998653
No 59
>PRK06425 histidinol-phosphate aminotransferase; Validated
Probab=66.59 E-value=20 Score=26.59 Aligned_cols=47 Identities=13% Similarity=0.348 Sum_probs=32.4
Q ss_pred hHHHHHHHhhcccccee-ecCCCCC-CCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMIT-YQPIHAL-PNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~-YqPl~~~-~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.+.| ..|- ....+.. .+|+|+.+. +.++++.+++.+.++
T Consensus 282 ~~~~~~~l~~~g-i~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~ 330 (332)
T PRK06425 282 AHDFYSYLLKNG-ILVRLLDDYECLGEQYIRIAIR----RRSFNIKLVNALRNF 330 (332)
T ss_pred HHHHHHHHHHCC-eEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHH
Confidence 567888999998 4443 2222122 489998864 467899999998764
No 60
>TIGR01885 Orn_aminotrans ornithine aminotransferase. This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.
Probab=66.44 E-value=19 Score=27.49 Aligned_cols=46 Identities=17% Similarity=0.301 Sum_probs=33.7
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.++| ..+. |. .++.+|++. .-..|++++|.+++-|++.
T Consensus 354 ~~~l~~~l~~~G-v~v~--~~--~~~~lRi~p-~l~~t~~~i~~~l~~l~~~ 399 (401)
T TIGR01885 354 AWDLCLKLKEKG-LLAK--PT--HGNIIRLAP-PLVITEEQLDEGLEIIKKV 399 (401)
T ss_pred HHHHHHHHHhCC-EEEE--ec--CCCEEEEeC-CccCCHHHHHHHHHHHHHH
Confidence 456778888898 4453 32 358899774 2358999999999988764
No 61
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=66.01 E-value=5.5 Score=33.17 Aligned_cols=48 Identities=19% Similarity=0.495 Sum_probs=38.5
Q ss_pred HHhhccccceeecCCCCC-----CCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 33 RMMKSGSMMITYQPIHAL-----PNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 33 rM~~~Gs~MV~YqPl~~~-----~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|-++.||+|.+..|..+. -++-|+.+.-=.-|.+.||++.+-+..+-+
T Consensus 388 R~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~~~~~~ 440 (467)
T TIGR02617 388 RAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE 440 (467)
T ss_pred ceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHHHHHHh
Confidence 567889999999998644 278998873335789999999999988754
No 62
>PRK05664 threonine-phosphate decarboxylase; Reviewed
Probab=65.87 E-value=17 Score=27.09 Aligned_cols=47 Identities=17% Similarity=0.259 Sum_probs=34.1
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+..+.+++.+.|=....| . .++++|+.+.. +.++++.+++-++++.+
T Consensus 281 ~~~~~~~l~~~gi~v~~f-~---~~~~iRis~~~---~~~~~~~l~~al~~~~~ 327 (330)
T PRK05664 281 AAALHEFLARRGILTRLF-E---QPASLRFGLPA---DEADWARLDQALLAYRK 327 (330)
T ss_pred HHHHHHHHHHCCeEEEEC-C---CCCeEEEECCC---CHHHHHHHHHHHHHHHh
Confidence 457788899999444433 2 35799988753 56789999998888765
No 63
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=65.03 E-value=5.9 Score=32.72 Aligned_cols=48 Identities=21% Similarity=0.286 Sum_probs=38.8
Q ss_pred HHhhccccceeecCCCCC-----CCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 33 RMMKSGSMMITYQPIHAL-----PNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 33 rM~~~Gs~MV~YqPl~~~-----~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|-++.|++|.|..|..+. -++-|+.+.-=.-|.+.||++.+-+..+-+
T Consensus 380 R~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~ 432 (460)
T PRK13237 380 RSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYK 432 (460)
T ss_pred CeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHH
Confidence 567889999999998755 378998873335789999999999988754
No 64
>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type. This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.
Probab=64.97 E-value=19 Score=28.39 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=35.7
Q ss_pred hHHHHHHHhhccccce--eecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMI--TYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV--~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..|+..|-++| +-| |+-+ .+++-||+- +=+.++.+|++.+++.|+=+
T Consensus 321 ~~~~~~~l~~~g-i~i~~G~~~--~~~~~fRIg-~~G~i~~~di~~l~~~l~~~ 370 (374)
T TIGR01365 321 AKELISTLEKEG-VAYDIGSYR--DAPSGLRIW-CGATVEKSDLECLCPWLDWA 370 (374)
T ss_pred HHHHHHHHHHCC-EEEeccccc--cCCCceEEe-cCCcCCHHHHHHHHHHHHHH
Confidence 466778888888 433 3322 346899965 77889999999999998754
No 65
>PRK06149 hypothetical protein; Provisional
Probab=64.92 E-value=16 Score=32.20 Aligned_cols=47 Identities=23% Similarity=0.578 Sum_probs=35.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
.+-.|..+|.++| +++. |.+..+|..|+. |. .|++++|++++-+++.
T Consensus 919 ~~~~i~~~l~~~G-vl~~--~~g~~~~vl~~~---Ppl~it~~~id~~~~~l~~~ 967 (972)
T PRK06149 919 ETAAICDRLLELG-VIMQ--PTGDHLNILKIK---PPLCLDRESADFFVDMLDRV 967 (972)
T ss_pred HHHHHHHHHHhCC-eEEe--ecCCCCCEEEEE---CCCcCCHHHHHHHHHHHHHH
Confidence 3567889999999 4443 334446887755 65 8899999999999875
No 66
>PF01724 DUF29: Domain of unknown function DUF29; InterPro: IPR002636 This entry is represented by Ralstonia phage RSS1, Orf11. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of various hypothetical proteins from cyanobacteria, none of which are functionally described. The aligned region is approximately 120-140 amino acids long corresponding to almost the entire length of the proteins in the family.; PDB: 3FCN_A.
Probab=64.34 E-value=4.5 Score=27.96 Aligned_cols=19 Identities=37% Similarity=0.669 Sum_probs=14.4
Q ss_pred CCChhhHHHHHHHHHHhcc
Q psy2616 62 ALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 62 ~~t~~dmD~ll~eIerlG~ 80 (82)
....-|.|.|++|||.+|+
T Consensus 21 ~~~~lD~enLiEEiE~mg~ 39 (139)
T PF01724_consen 21 DFDALDWENLIEEIEDMGR 39 (139)
T ss_dssp SSTT--HHHHHHHHHHHHH
T ss_pred CChHhhHHHHHHHHHHHhH
Confidence 3456789999999999996
No 67
>PRK09064 5-aminolevulinate synthase; Validated
Probab=64.24 E-value=23 Score=26.91 Aligned_cols=52 Identities=10% Similarity=0.194 Sum_probs=32.9
Q ss_pred HHHHHHHhhc-cccceeec--CC-CCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMMKS-GSMMITYQ--PI-HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~~~-Gs~MV~Yq--Pl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
-.+.++|.++ | ..|..- |- +...+..|+. .....|++|+|.+++.|+++.++
T Consensus 342 ~~l~~~L~~~~g-i~v~~~~~p~~~~~~~~lRis-~~~~~t~edi~~l~~~l~~~~~~ 397 (407)
T PRK09064 342 KKASDMLLEEHG-IYVQPINYPTVPRGTERLRIT-PTPFHTDEMIDHLVEALVEVWAR 397 (407)
T ss_pred HHHHHHHHHhCC-EEEeeECCCCCCCCCceEEEE-eCCCCCHHHHHHHHHHHHHHHHH
Confidence 3566777654 6 555432 21 1123678866 34557899999999999887543
No 68
>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family. Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.
Probab=64.04 E-value=13 Score=28.58 Aligned_cols=49 Identities=10% Similarity=0.147 Sum_probs=33.0
Q ss_pred HHHHHHHhhccccceeecCC-CCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 28 PKIKERMMKSGSMMITYQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl-~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
...+..|.+.| .+|-.... ++.++|+|+.++.|.-++.+++.+++.|++
T Consensus 294 ~~~~~ll~~~g-V~v~~~~~f~~~~~~vRis~~~~~~~~~~~~~~~~al~~ 343 (346)
T TIGR03576 294 EIGLDLLRNYG-IITITAVGMPGASKTLRFDLAAKDAERIGDDYLVEAVKD 343 (346)
T ss_pred HHHHHHHHhCC-EEEeCCcccCCCCCeEEEEEecChHHhcCHHHHHHHHHh
Confidence 35566666677 44442111 234689999988776666789999998875
No 69
>PRK07678 aminotransferase; Validated
Probab=63.88 E-value=21 Score=28.38 Aligned_cols=50 Identities=8% Similarity=0.205 Sum_probs=34.0
Q ss_pred chHHHHHHHhhccccceeecCC--CCCCCcceEeecCCC--CChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPI--HALPNFFRLVLQNSA--LDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl--~~~~NFFR~V~~np~--~t~~dmD~ll~eIerlG 79 (82)
.+-.+...|.++| +++...+. +..+|..|+. |. .|++|+|.+++-+++.=
T Consensus 394 ~a~~i~~~l~~~G-v~~~~~g~~v~~~~~~lrl~---Ppl~it~~eid~~~~~l~~~l 447 (451)
T PRK07678 394 KVASVVAACKEKG-LIIGKNGDTVAGYNNVLTLS---PPLVISSEEIAFIVGTLKTAL 447 (451)
T ss_pred HHHHHHHHHHHCC-cEEeecCccccCCCCEEEEE---CCCcCCHHHHHHHHHHHHHHH
Confidence 4567888999999 55543211 1234766644 55 49999999999988753
No 70
>PF05639 Pup: Pup-like protein; InterPro: IPR008515 This family consists of several short bacterial proteins formely known as (DUF797). It was recently shown that Mycobacterium tuberculosis contains a small protein, Pup (Rv2111c), that is covalently conjugated to the e-NH2 groups of lysines on several target proteins (pupylation) such as the malonyl CoA acyl carrier protein (FabD) []. Pupylation of FabD was shown to result in its recruitment to the mycobacterial proteasome and subsequent degradation analogous to eukaryotic ubiquitin-conjugated proteins. Searches recovered Pup orthologs in all major actinobacteria lineages including the basal bifidobacteria and also sporadically in certain other bacterial lineages []. The Pup proteins were all between 50-90 residues in length and a multiple alignment shows that they all contain a conserved motif with a G [EQ] signature at the C terminus. Thus, all of them are suitable for conjugation via the terminal glutamate or the deamidated glutamine (as shown in the case of the Mycobacterium Pup []). The conserved globular core of Pup is predicted to form a bihelical unit with the extreme C-terminal 6-7 residues forming a tail in the extended conformation. Thus, Pup is structurally unrelated to the ubiquitin fold and has convergently evolved the function of protein modifier. ; PDB: 3M91_D 3M9D_I.
Probab=63.64 E-value=3.5 Score=26.21 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.5
Q ss_pred CChhhHHHHHHHHHHh
Q psy2616 63 LDHSDMDYFIDEIERL 78 (82)
Q Consensus 63 ~t~~dmD~ll~eIerl 78 (82)
...+++|.|||||+.+
T Consensus 36 ~~~~~vD~lLDeID~v 51 (69)
T PF05639_consen 36 KLTDDVDDLLDEIDSV 51 (69)
T ss_dssp TCHCCHHHHHHHHTTT
T ss_pred HhHhHHHHHHHHHHHH
Confidence 4578999999999876
No 71
>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional
Probab=62.84 E-value=28 Score=25.84 Aligned_cols=48 Identities=19% Similarity=0.306 Sum_probs=32.1
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.++|.++| ..|..-... ..+.+|+.. ....|.+|++.+++.|+++
T Consensus 313 ~~l~~~L~~~g-i~v~~g~~~-~~~~iRis~-~~~~t~edi~~~l~~L~~~ 360 (368)
T PRK13479 313 KEFYERLKEQG-FVIYPGKLT-QVDTFRIGC-IGDVDAADIRRLVAAIAEA 360 (368)
T ss_pred HHHHHHHHHCC-EEEecCCCC-CCCEEEEec-CCCCCHHHHHHHHHHHHHH
Confidence 36778888888 555321111 246889752 2346899999999999765
No 72
>TIGR01141 hisC histidinol-phosphate aminotransferase. Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.
Probab=62.40 E-value=21 Score=26.27 Aligned_cols=42 Identities=21% Similarity=0.559 Sum_probs=28.7
Q ss_pred hHHHHHHHhhccccceeecCCC---CCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 27 APKIKERMMKSGSMMITYQPIH---ALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~---~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
+-.+.++|.+.| ..|. |.. +.++|+|+.+. |.+++|.+++.|
T Consensus 301 ~~~~~~~L~~~g-I~v~--~g~~f~~~~~~iRls~~----~~~~i~~~~~~l 345 (346)
T TIGR01141 301 ADALFEALLEKG-IIVR--DLNSYPGLPNCLRITVG----TREENDRFLAAL 345 (346)
T ss_pred HHHHHHHHHHCC-eEEE--eCCCcCCCCCeEEEecC----CHHHHHHHHHHh
Confidence 346778888888 3332 321 22689998854 688899998865
No 73
>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional
Probab=62.16 E-value=25 Score=26.91 Aligned_cols=46 Identities=13% Similarity=0.283 Sum_probs=32.6
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+-.+.+++.+.| +.+.. . .++++|+.. +-..|++++|.+++.|++.
T Consensus 349 ~~~~~~~l~~~G-v~~~~--~--~~~~iRi~p-~l~~t~e~i~~~~~~l~~~ 394 (396)
T PRK04073 349 ARPYCEALKEEG-LLCKE--T--HETVIRFAP-PLVITKEELDWAFEKIKAV 394 (396)
T ss_pred HHHHHHHHHHCC-eEEec--C--CCCEEEEEC-CcccCHHHHHHHHHHHHHH
Confidence 446778888888 44532 1 247899773 2257899999999998864
No 74
>PRK03244 argD acetylornithine aminotransferase; Provisional
Probab=60.89 E-value=29 Score=26.28 Aligned_cols=47 Identities=15% Similarity=0.367 Sum_probs=32.3
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.+++.++| +.+. | ..+|..|+.+ +...|++|||.+++.++++-
T Consensus 346 ~~~~~~~l~~~G-v~~~--~--~~~~~iR~~p-~~~~t~~~i~~~~~~l~~~l 392 (398)
T PRK03244 346 AKAVEAAAREAG-FLVN--A--VAPDVIRLAP-PLIITDAQVDAFVAALPAIL 392 (398)
T ss_pred HHHHHHHHHHCC-eEEe--e--cCCCEEEEEC-CCcCCHHHHHHHHHHHHHHH
Confidence 456777888888 4442 2 1247788663 33478999999999988763
No 75
>PRK10874 cysteine sulfinate desulfinase; Provisional
Probab=60.83 E-value=30 Score=26.17 Aligned_cols=50 Identities=12% Similarity=0.205 Sum_probs=33.8
Q ss_pred HHHHHHHhhccccceeecCCC--------CCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 28 PKIKERMMKSGSMMITYQPIH--------ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~--------~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
..+.++|-++| ..|.-.... +..+.+|+.+.. -.|.+|||.+++.|+.+-
T Consensus 339 ~~~~~~L~~~g-I~v~~g~~~~~~~~~~~g~~~~iRiS~~~-~nt~edid~ll~al~~~~ 396 (401)
T PRK10874 339 SDLVTLLAEYG-IALRAGQHCAQPLLAALGVTGTLRASFAP-YNTQSDVDALVNAVDRAL 396 (401)
T ss_pred HHHHHHHHHCC-cEEeccccchHHHHHHhCCCCEEEEEecc-cCCHHHHHHHHHHHHHHH
Confidence 56777777777 555432211 224789988653 359999999999998764
No 76
>PRK03080 phosphoserine aminotransferase; Provisional
Probab=60.82 E-value=29 Score=26.57 Aligned_cols=49 Identities=10% Similarity=0.219 Sum_probs=32.9
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.+..++.++| ..|..-.++..++-||+- ...-.|.+|+|.+++.|+++-
T Consensus 323 ~~~~~l~~~~-i~v~~g~~~~~~~~vRis-~~~~~t~~di~~l~~al~~~~ 371 (378)
T PRK03080 323 AAVAKLLREN-GAVDIEPYRDAPNGLRIW-CGPTVEPADVEALTPWLDWAF 371 (378)
T ss_pred HHHHHHHHcC-CeeccccccCCCCcEEEe-cCCCCCHHHHHHHHHHHHHHH
Confidence 4555666666 555332233345789977 445688999999999998753
No 77
>PRK04870 histidinol-phosphate aminotransferase; Provisional
Probab=60.67 E-value=28 Score=25.87 Aligned_cols=47 Identities=13% Similarity=0.256 Sum_probs=31.9
Q ss_pred hHHHHHHHhhccccceeecCC--CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPI--HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl--~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
...+.+.+.+.| ..|.-... ...++|||+.++ +.+++|.+++.|.++
T Consensus 307 ~~~~~~~l~~~g-I~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~al~~~ 355 (356)
T PRK04870 307 AAAVFDGLKTRG-VLVKNLSGMHPLLANCLRVTVG----TPEENAQFLAALKAA 355 (356)
T ss_pred HHHHHHHHHHCC-EEEEECCCCCCCCCCeEEEeCC----CHHHHHHHHHHHHHh
Confidence 356777888888 44432111 123689998876 578899999998765
No 78
>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.
Probab=60.19 E-value=21 Score=27.03 Aligned_cols=44 Identities=11% Similarity=0.075 Sum_probs=31.9
Q ss_pred HHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 32 ERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 32 erM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
..+..+|- . .|-.++ ....+|+. +.+-.|.+|+|.+++.+.++-
T Consensus 311 ~~~~r~G~-~-~~~~~~-~~g~vR~S-~~~~nt~edi~~l~~al~~~~ 354 (355)
T cd00611 311 KEAEAAGM-I-GLKGHR-SVGGIRAS-IYNALSLEGVQALADFMKEFQ 354 (355)
T ss_pred HHHHHCCC-c-ccCCCc-ccCeEEEE-ccCCCCHHHHHHHHHHHHHHh
Confidence 46677884 2 554443 24689977 467789999999999998763
No 79
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=59.94 E-value=29 Score=26.82 Aligned_cols=47 Identities=21% Similarity=0.321 Sum_probs=32.8
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+..++.++| +++. |. .+|..|+.+ +-..|++++|.+++-++++
T Consensus 350 ~~~~~~~~l~~~G-v~v~--~~--g~~~lRl~p-~~~~t~~~i~~~~~~l~~~ 396 (406)
T PRK12381 350 KAKQISQEAAKAG-VMVL--IA--GPNVVRFAP-ALNISEEEITTGLDRFARA 396 (406)
T ss_pred HHHHHHHHHHHCC-cEEe--eC--CCCEEEEeC-CccCCHHHHHHHHHHHHHH
Confidence 3567778888888 5553 21 247788663 2247899999999998875
No 80
>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional
Probab=59.81 E-value=30 Score=26.62 Aligned_cols=47 Identities=11% Similarity=0.062 Sum_probs=33.3
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.+...+..+|-. + |-.+. ...-||+. +.+..|.+|+|.+++.++++-
T Consensus 310 ~~~~~~~~~Gi~-~-~~~~~-~~g~vRiS-~~~~nt~eei~~l~~~l~~~~ 356 (360)
T PRK05355 310 KFLAEAKAAGLV-G-LKGHR-SVGGMRAS-IYNAMPLEGVQALVDFMKEFE 356 (360)
T ss_pred HHHHHHHHCCCc-c-cCCCC-ccCcEEEE-CCCCCCHHHHHHHHHHHHHHH
Confidence 455677778843 4 54432 24679977 466789999999999998763
No 81
>PLN02452 phosphoserine transaminase
Probab=59.45 E-value=25 Score=27.56 Aligned_cols=49 Identities=10% Similarity=0.222 Sum_probs=38.3
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
...+.+.+-++| +++|..++..+. ||.. +-++++.++|+.|++-|++-.
T Consensus 313 ~~~f~~~~~~~g--~~~~~G~r~~gg-~R~s-~yna~~~~~v~~L~~~m~~f~ 361 (365)
T PLN02452 313 EAEFVKEAAKAG--MVQLKGHRSVGG-MRAS-IYNAMPLAGVEKLVAFMKDFQ 361 (365)
T ss_pred HHHHHHHHHHCC--CcccCCccccCc-eEEE-CcCCCCHHHHHHHHHHHHHHH
Confidence 445667777888 778888887777 9966 667889999999999887643
No 82
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=59.14 E-value=27 Score=26.71 Aligned_cols=46 Identities=13% Similarity=0.187 Sum_probs=31.2
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.++|..+| ..+.+. .++.+|+.+.-.-.|++|+|.+++.|.++
T Consensus 359 ~~~~~~L~~~g-i~v~~~----~~~~iRiS~~~~~nt~~did~l~~~l~~~ 404 (406)
T TIGR01814 359 KAVFQALIKRG-VIGDKR----EPSVIRVAPVPLYNTFVDVYDAVNVLEEI 404 (406)
T ss_pred HHHHHHHHHCC-EEEecc----CCCeEEEechhccCCHHHHHHHHHHHHHH
Confidence 45667777777 455432 23578866422356899999999999865
No 83
>PF09078 CheY-binding: CheY binding; InterPro: IPR015162 The CheY binding domain is found in the response regulator histidine kinase CheA. It adopts a secondary structure consisting of an open-face beta/alpha sandwich, with four antiparallel beta-strands and two alpha-helices. It binds to a corresponding domain on CheY, with subsequent phosphorylation of the CheY Asp57 residue, and activation of CheY, which then affects flagellar rotation []. ; PDB: 1FWP_A 1EAY_C 1A0O_D 1FFG_B 1FFS_B 1FFW_D.
Probab=59.00 E-value=11 Score=23.56 Aligned_cols=25 Identities=36% Similarity=0.745 Sum_probs=18.5
Q ss_pred ceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 54 FRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 54 FR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+|+.+ |.++.+|++-+.+|+..||+
T Consensus 1 lrI~L--~~l~~kd~~lL~eELgnLG~ 25 (65)
T PF09078_consen 1 LRITL--SGLKEKDVDLLLEELGNLGT 25 (65)
T ss_dssp -EEEE--ES--TTHHHHHHHHHHHHS-
T ss_pred CeEEe--cCCCHHHHHHHHHHHhcCcc
Confidence 46555 78899999999999999996
No 84
>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=58.34 E-value=31 Score=26.84 Aligned_cols=49 Identities=12% Similarity=0.211 Sum_probs=33.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+.++|.++| +++ .|....+|.+|+.+. -..|.+++|..++-+++.
T Consensus 369 ~~~~l~~~~~~~G-v~i--~p~~~f~~~lRl~p~-l~~~~~~l~~~~~~l~~~ 417 (420)
T TIGR00700 369 LAERIATAAHAAG-LLL--LTCGMFGNIIRFLPP-LTIGDELLSEGLDILCAI 417 (420)
T ss_pred HHHHHHHHHHHCC-eEE--eccCCCCCEEEEECC-CCcCHHHHHHHHHHHHHH
Confidence 3456677788899 444 344333588887631 136899999999888765
No 85
>PRK14809 histidinol-phosphate aminotransferase; Provisional
Probab=58.34 E-value=37 Score=25.29 Aligned_cols=48 Identities=13% Similarity=0.284 Sum_probs=31.6
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+-.+.+.+.+.|-........ +.++|||+.+. +.++++..++.|.++=
T Consensus 308 ~~~~~~~l~~~gv~v~~g~~f-~~~~~iRls~~----~~~~~~~~l~~L~~~l 355 (357)
T PRK14809 308 ASAVAEAAQERGVIVRDCTSF-GLPECIRITCG----TREETERAVEVLNEVL 355 (357)
T ss_pred HHHHHHHHHHCCEEEEECccC-CCCCeEEEecC----CHHHHHHHHHHHHHHh
Confidence 346677788888443332222 34689998864 3578999998887653
No 86
>TIGR03372 putres_am_tran putrescine aminotransferase. Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.
Probab=58.23 E-value=29 Score=27.86 Aligned_cols=49 Identities=4% Similarity=0.104 Sum_probs=34.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+...|.++| +++... ...+|..|+. -.-..|++|+|.+++-+++.
T Consensus 393 ~~~~i~~~l~~~G-vl~~~~--~~~~~~lr~~-Ppl~~t~~~id~~~~~l~~~ 441 (442)
T TIGR03372 393 IGYAFAKELFQQN-ILVAGT--LNNAKSIRIE-PPLTITIEQCALVIKAAKDA 441 (442)
T ss_pred HHHHHHHHHHHCC-cEEeec--CCCCCEEEEE-CCcccCHHHHHHHHHHHHHh
Confidence 3456788899999 555432 1125778865 22358999999999988764
No 87
>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional
Probab=58.21 E-value=30 Score=27.85 Aligned_cols=49 Identities=6% Similarity=0.135 Sum_probs=33.9
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+-.+..+|.++| +++... ...+|-.|+. ..-..|++|+|.+++-+++.
T Consensus 400 ~~~~i~~~l~~~G-vl~~~~--~~~~~~lr~~-Ppl~~t~~~id~~l~~l~~~ 448 (459)
T PRK11522 400 IGYNFASEMFRQR-VLVAGT--LNNAKTIRIE-PPLTLTIEQCEQVLKAARKA 448 (459)
T ss_pred HHHHHHHHHHHCC-eEEEec--CCCCCEEEEE-CCccCCHHHHHHHHHHHHHH
Confidence 3556778888888 555432 2235777765 23358899999999988765
No 88
>PRK06225 aspartate aminotransferase; Provisional
Probab=57.89 E-value=32 Score=25.89 Aligned_cols=49 Identities=10% Similarity=0.251 Sum_probs=31.4
Q ss_pred hHHHHHHHhhcccccee--ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMIT--YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~--YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
...+.+++.+.|=.... +.......+|+|+.++. ++++++.+++.|.++
T Consensus 323 ~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~~~---~~e~l~~~~~~l~~~ 373 (380)
T PRK06225 323 PEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSFSI---PREQVEVFCEEFPDV 373 (380)
T ss_pred HHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEeCC---CHHHHHHHHHHHHHH
Confidence 45677788888832221 10011124799998754 589999999998765
No 89
>PRK06918 4-aminobutyrate aminotransferase; Reviewed
Probab=57.69 E-value=35 Score=26.97 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=34.3
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+.+++.++| +.+ .|.+..+|.+|+.++ -.+|.+++|..++-|++.
T Consensus 392 ~~~~l~~~~~~~G-vlv--~~~~~~~~~lrl~p~-l~~t~~~id~~l~~l~~~ 440 (451)
T PRK06918 392 LTANICKEANKRG-LLL--LSAGTYGNVIRVLMP-LVITDEQLEEGLTIIEES 440 (451)
T ss_pred HHHHHHHHHHHCC-eEE--eecCCCCCEEEEECC-CccCHHHHHHHHHHHHHH
Confidence 3556778888999 444 343334688887642 247899999999988775
No 90
>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases. This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.
Probab=57.21 E-value=32 Score=27.20 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=33.8
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
++..+..+|.++| +++.. .+..+|=.|+. ..-..|++++|.+++-+++.
T Consensus 384 ~~~~~~~~~~~~G-vl~~~--~~~~~~~l~~~-Ppl~it~~ei~~~~~~l~~~ 432 (442)
T TIGR00709 384 LAAAIQGACFENG-LLLET--GGREGEVFRLL-CPITIDQEECEEGISRFKQA 432 (442)
T ss_pred HHHHHHHHHHHCC-eEEee--cCCCCCEEEEE-CCCCCCHHHHHHHHHHHHHH
Confidence 5667888899999 55543 22335656644 23358899999999988764
No 91
>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase. This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.
Probab=56.05 E-value=34 Score=25.87 Aligned_cols=52 Identities=13% Similarity=0.250 Sum_probs=32.9
Q ss_pred hHHHHHHHhhcccc-ceeecCCCC---------CCCcc-------eEee--cCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSM-MITYQPIHA---------LPNFF-------RLVL--QNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~-MV~YqPl~~---------~~NFF-------R~V~--~np~~t~~dmD~ll~eIerl 78 (82)
...+.+.|-++|=. -+.|.|+.. ..+|. |++- +.|.+|.+|||++++.|.++
T Consensus 309 r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~l~~~ 379 (380)
T TIGR03588 309 RKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVETLRKV 379 (380)
T ss_pred HHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHHHHHh
Confidence 35666677777722 244666431 12333 4333 57789999999999999864
No 92
>KOG1357|consensus
Probab=56.04 E-value=6.3 Score=33.27 Aligned_cols=22 Identities=23% Similarity=0.555 Sum_probs=18.7
Q ss_pred CCCCChhhHHHHHHHHHHhccc
Q psy2616 60 NSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 60 np~~t~~dmD~ll~eIerlG~d 81 (82)
+...|++++|+++++|++.|..
T Consensus 481 Sa~ht~e~ld~~l~~i~~~g~~ 502 (519)
T KOG1357|consen 481 SASHTKEDLDRALEVIDRVGDE 502 (519)
T ss_pred cccccHHHHHHHHHHHhhhchh
Confidence 3457899999999999999953
No 93
>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....
Probab=55.53 E-value=27 Score=25.63 Aligned_cols=53 Identities=11% Similarity=0.283 Sum_probs=36.1
Q ss_pred hhhhhcc-hHHHHHHHhhc-cccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 20 SSSSLQV-APKIKERMMKS-GSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 20 ~~kL~kV-ap~IKerM~~~-Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
|..+... +..+.+++.++ |=..+...-. +.+++||+.+ ...++++++.+++-|
T Consensus 309 ~~~~~~~~~~~l~~~L~~~~gi~v~pg~~~-~~~~~iRi~~--a~~~~e~~~~~~~~l 363 (363)
T PF00155_consen 309 WVRLDPNDAEELAQELLEEYGILVRPGSYF-GVPGYIRISL--ASHSEEDLEEALERL 363 (363)
T ss_dssp EEEESHHHHHHHHHHHHHHHTEEEEEGGGG-TSTTEEEEEG--GCSCHHHHHHHHHHH
T ss_pred EEEcccchHHHHHHHHHHhCCEEEEecCCC-CCCCEEEEEe--ccCCHHHHHHHHhhC
Confidence 5555543 55677888888 8554443322 2288999886 566899999998765
No 94
>PLN02822 serine palmitoyltransferase
Probab=54.79 E-value=31 Score=27.79 Aligned_cols=51 Identities=20% Similarity=0.345 Sum_probs=34.8
Q ss_pred HHHHHHHh-hccccceeec--CCCC---CCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 28 PKIKERMM-KSGSMMITYQ--PIHA---LPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 28 p~IKerM~-~~Gs~MV~Yq--Pl~~---~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
-.+..+|. +.|=+.. -. |.-+ .+...|+.+ |...|++|+|.+++-|+++.+
T Consensus 420 ~~~~~~Ll~e~GV~v~-~~~~~~~~~~~~~~~lRi~i-s~~~t~edI~~~~~~l~~~~~ 476 (481)
T PLN02822 420 EHIADRMLKEDSVLVV-VSKRSTLDKCRLPVGIRLFV-SAGHTESDILKASESLKRVAA 476 (481)
T ss_pred HHHHHHHHhcCCEEEE-eeCCCCcCCCCCCCcEEEEE-CCCCCHHHHHHHHHHHHHHHH
Confidence 46778887 7784444 32 2211 134699764 566799999999999988754
No 95
>TIGR00707 argD acetylornithine and succinylornithine aminotransferases. Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)
Probab=54.42 E-value=44 Score=24.81 Aligned_cols=46 Identities=13% Similarity=0.350 Sum_probs=30.5
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.++| ..|. |. ..+++|+.+ +...|.+++|.+++.|+++
T Consensus 333 ~~~~~~~l~~~G-v~v~--~~--~~~~lRi~~-~~~~t~~~i~~~~~~l~~~ 378 (379)
T TIGR00707 333 CKDIVKKALEKG-LLVN--CA--GPKVLRFLP-PLIITKEEIDEAVSALEEA 378 (379)
T ss_pred HHHHHHHHHHCC-cEEe--eC--CCCEEEEEC-CCcCCHHHHHHHHHHHHHh
Confidence 346667777777 3332 32 247889763 3346899999999998764
No 96
>PRK04366 glycine dehydrogenase subunit 2; Validated
Probab=54.19 E-value=25 Score=28.17 Aligned_cols=52 Identities=17% Similarity=0.429 Sum_probs=33.6
Q ss_pred hHHHHHHHhhcccccee--ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 27 APKIKERMMKSGSMMIT--YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~--YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+..|.++|.+.| +.++ |.|.. ..+-+|+. ..-..|++|||.+++.+.++++.
T Consensus 395 ~~~v~~~L~~~G-i~~~~~~~p~~-~~~~l~is-~~e~~t~edid~l~~~l~~i~~~ 448 (481)
T PRK04366 395 TLDIAKRLLDYG-FHPPTIYFPLI-VPEALMIE-PTETESKETLDAFIAAMKQIAEE 448 (481)
T ss_pred HHHHHHHHHHCC-ccCCccccccc-cCCeEEEc-ccCCCCHHHHHHHHHHHHHHHHH
Confidence 456889999998 3332 22321 12334533 23467899999999999988653
No 97
>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase. Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.
Probab=54.14 E-value=41 Score=24.96 Aligned_cols=46 Identities=20% Similarity=0.376 Sum_probs=30.2
Q ss_pred HHHHHHhhccccceeecCCC-CCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 29 KIKERMMKSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~-~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+.++|-++| ..|. |.. ...+.||+.+. ...|.+|++.+++.|.++
T Consensus 313 ~v~~~L~~~g-i~v~--~g~~~~~~~iRi~~~-~~~~~edv~~~l~~l~~~ 359 (363)
T TIGR02326 313 DFYQRLKEQG-FVIY--PGKVSQVDCFRIGNI-GEVDAADITRLLTAIGKA 359 (363)
T ss_pred HHHHHHHHCC-EEEE--CCcCCCCCEEEEecC-CCCCHHHHHHHHHHHHHH
Confidence 4556676676 3332 221 12478997632 356899999999999875
No 98
>PRK06082 4-aminobutyrate aminotransferase; Provisional
Probab=54.13 E-value=37 Score=27.23 Aligned_cols=45 Identities=13% Similarity=0.244 Sum_probs=31.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
.+..+..+|.++| +++.- ..+|..|+. |. .|++++|.+++-+++.
T Consensus 402 ~~~~~~~~~~~~G-vl~~~----~~~~~i~~~---Ppl~it~~eid~~~~~l~~~ 448 (459)
T PRK06082 402 EAEAVLYRCLNNG-LSFKV----SQGNVIQLS---PPLIITREELTQALAILEEA 448 (459)
T ss_pred HHHHHHHHHHhCC-CEEEe----cCCCEEEEe---CCCccCHHHHHHHHHHHHHH
Confidence 3557778899999 44432 124666643 65 5899999999988764
No 99
>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative. This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.
Probab=53.79 E-value=39 Score=25.11 Aligned_cols=51 Identities=16% Similarity=0.335 Sum_probs=31.4
Q ss_pred HHHHHHhhcccccee--ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 29 KIKERMMKSGSMMIT--YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~--YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
.+.++|.++|=...+ |...+...+..|+.+ +-..|.+|+|.+++.|+++-+
T Consensus 328 ~~~~~L~~~gi~v~~~~~~~~~~~~~~iRi~~-~~~~~~e~i~~~~~~l~~~~~ 380 (385)
T TIGR01825 328 EFSRRLFDEGIFAQSIVFPTVPRGTARIRNIP-TAEHTKDDLDQALDAYEKVGK 380 (385)
T ss_pred HHHHHHHHCCcEEcccCCCCCCCCCceEEEEE-cCCCCHHHHHHHHHHHHHHHH
Confidence 566788888733322 211121235667552 235799999999999988643
No 100
>PRK03967 histidinol-phosphate aminotransferase; Provisional
Probab=53.35 E-value=35 Score=25.48 Aligned_cols=45 Identities=13% Similarity=0.356 Sum_probs=31.4
Q ss_pred HHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 30 IKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 30 IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+.+.+.++| +.|..-+ +...+|+|+.+. +.++.+.+++.|.++.+
T Consensus 289 ~~~~l~~~g-i~v~~~~-~~~~~~~Ri~~~----~~~~~~~l~~~l~~~~~ 333 (337)
T PRK03967 289 AYDYLLENG-IVVRKLS-GRLEGHIRVTVG----KREENDEFIKALKEIKE 333 (337)
T ss_pred HHHHHHHCC-EEEEeCC-CCCCCeEEEecC----CHHHHHHHHHHHHHHHH
Confidence 678888888 5554322 234689998865 45678888888887754
No 101
>PRK07681 aspartate aminotransferase; Provisional
Probab=53.34 E-value=33 Score=26.09 Aligned_cols=58 Identities=12% Similarity=0.162 Sum_probs=36.6
Q ss_pred hhhhhc--chHHHHHHHhh-ccccceeecCCC-CCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 20 SSSSLQ--VAPKIKERMMK-SGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 20 ~~kL~k--Vap~IKerM~~-~Gs~MV~YqPl~-~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|-++.. -+..+.+++.+ .|-..+.-..-+ ...+|||+.++. +.++++..++.|.+.|.
T Consensus 326 ~~~l~~~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRis~~~---~~~~~~~~l~~l~~~~~ 387 (399)
T PRK07681 326 WAEIPKGWTSLSFAYALMDRANVVVTPGHAFGPHGEGFVRIALVQ---DEEVLQQAVENIRNSGI 387 (399)
T ss_pred EEECCCCCCHHHHHHHHHHhCCEEEeCChhhCcCCCCeEEEEecC---CHHHHHHHHHHHHHhcc
Confidence 545432 24567778877 684333211111 225799999863 47899999999988773
No 102
>PF12793 SgrR_N: Sugar transport-related sRNA regulator N-term
Probab=53.06 E-value=55 Score=21.88 Aligned_cols=31 Identities=29% Similarity=0.366 Sum_probs=26.7
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeec
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQ 59 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~ 59 (82)
|..+-.+|...| -|.|+|-.+.||-=++.+.
T Consensus 36 ~r~lLkkm~~~g--Wi~W~pg~GRG~~S~L~~l 66 (115)
T PF12793_consen 36 ARTLLKKMQEEG--WITWQPGRGRGNRSQLTFL 66 (115)
T ss_pred HHHHHHHHHHCC--CeeeeCCCCCCCCCeeEEe
Confidence 345668999999 8999999999999998875
No 103
>PRK05769 4-aminobutyrate aminotransferase; Provisional
Probab=52.97 E-value=34 Score=27.18 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=31.7
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerlG 79 (82)
++..+..+|.++| +++. |.+ .|-.|+ +|. .|++|+|.+++-+++.-
T Consensus 390 ~~~~~~~~~~~~G-il~~--~~~--~~~lr~---~p~l~~t~~~id~~~~~l~~~l 437 (441)
T PRK05769 390 LRDKVLYEAFKRG-LLLL--GAG--KSAIRI---IPPLIITEEEADIGLEILEEAI 437 (441)
T ss_pred HHHHHHHHHHhCC-cEEe--cCC--CCEEEE---eCCCCCCHHHHHHHHHHHHHHH
Confidence 5667888899999 4442 221 244453 355 59999999999998763
No 104
>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.
Probab=52.78 E-value=30 Score=25.95 Aligned_cols=47 Identities=11% Similarity=0.140 Sum_probs=31.9
Q ss_pred hHHHHHHHhhccccceeec----------CC-CCCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 27 APKIKERMMKSGSMMITYQ----------PI-HALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~Yq----------Pl-~~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
+..+.++|-++| ..|.-- |. +.++..+|+.+ ..-.|++|+|.+++.|
T Consensus 340 ~~~l~~~L~~~g-I~v~~~~~~~~~~~~~~~~~~~~~~iRis~-~~~~t~~di~~l~~~l 397 (397)
T TIGR01976 340 PQRVVRRLADQG-IDAWAGHFYAVRLLRRLGLNDEGGVVRVGL-AHYNTAEEVDRLLEAL 397 (397)
T ss_pred HHHHHHHHHHCC-eEEEeCccchHHHHHHhCCCCCCCeEEEEe-eccCCHHHHHHHHHhC
Confidence 356888888888 666521 11 12356899774 4467899999999864
No 105
>PRK06358 threonine-phosphate decarboxylase; Provisional
Probab=52.70 E-value=43 Score=25.16 Aligned_cols=54 Identities=11% Similarity=0.297 Sum_probs=34.4
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCC-CCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~-~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|=++.. ...+.+++.+.|-.......-++ ..+|+|+.+. +.++++.+++.++++
T Consensus 298 ~~~~~~-~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRls~~----~~~~~~~l~~~l~~~ 352 (354)
T PRK06358 298 FFKLEK-PIDLRKELLKKGILIRSCSNYRGLDENYYRVAVK----SREDNKKLLKALEVI 352 (354)
T ss_pred EEEcCc-hHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEeC----CHHHHHHHHHHHHHH
Confidence 445432 35788899999833322111122 2479998754 568899999998765
No 106
>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed
Probab=52.06 E-value=47 Score=25.18 Aligned_cols=45 Identities=13% Similarity=0.321 Sum_probs=30.7
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.++|.++| +.+. | ..++..|+++ +-..|++++|.+++.+++.
T Consensus 354 ~~~~~~L~~~G-V~v~--~--~~~~~lR~~p-~~~~t~e~i~~~i~~l~~~ 398 (401)
T PRK00854 354 RQYCEALKERG-LLAK--D--THDHTIRLAP-PLVITREQVDWALEQIAKV 398 (401)
T ss_pred HHHHHHHHHCC-eEEe--c--CCCCEEEEeC-CcccCHHHHHHHHHHHHHH
Confidence 45667777887 4443 2 1247888663 2257899999999998764
No 107
>PRK05639 4-aminobutyrate aminotransferase; Provisional
Probab=51.97 E-value=43 Score=26.90 Aligned_cols=49 Identities=16% Similarity=0.222 Sum_probs=33.7
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
++-.+...+.++| +++.. .+..+|-.|+. -.-..|++|+|.+++-+++.
T Consensus 392 ~~~~~~~~~~~~G-v~~~~--~g~~~~~lr~~-Ppl~it~~~id~~~~~l~~~ 440 (457)
T PRK05639 392 LTGKICWRAFELG-LILPS--YGMFGNVIRIT-PPLVITKEIAEKGLEIMERA 440 (457)
T ss_pred HHHHHHHHHHhCC-eEEee--cCCCCCEEEEe-CCCccCHHHHHHHHHHHHHH
Confidence 3456778888999 55533 23235778865 22358899999999988875
No 108
>PRK06148 hypothetical protein; Provisional
Probab=51.75 E-value=35 Score=30.37 Aligned_cols=49 Identities=14% Similarity=0.291 Sum_probs=35.7
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
++..|..+|.++| +++.. .+..+|-.|+. .+-..|++++|++++-+++.
T Consensus 959 ~~~~i~~~~~~~G-vl~~~--~g~~~~vlr~~-Ppl~it~~~id~~l~~l~~~ 1007 (1013)
T PRK06148 959 IARYVKNGARERG-ILIGT--EGPHDNVLKIR-PPLIFSRADADHLLEVLDDV 1007 (1013)
T ss_pred HHHHHHHHHHhCC-eEEec--cCCCCCEEEEe-CCccCCHHHHHHHHHHHHHH
Confidence 4567889999999 55532 33346878865 33458899999999998765
No 109
>PRK04260 acetylornithine aminotransferase; Provisional
Probab=51.60 E-value=34 Score=25.82 Aligned_cols=53 Identities=13% Similarity=0.173 Sum_probs=35.6
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++..-+..+.+++.++|-+ | .|. ..+..|++ .+...|.+|+|.+++-|+++
T Consensus 322 ~~~~~~~~~~~~~~l~~~Gi~-v--~~~--~~~~lR~~-~~~~~t~~~i~~~l~~l~~~ 374 (375)
T PRK04260 322 GIETTADLSQLVEAARDKGLI-V--LTA--GTNVIRLL-PPLTLTKEEIEQGIAILSEV 374 (375)
T ss_pred EEEecCcHHHHHHHHHhCCCE-E--ecC--CCCEEEEc-CCCccCHHHHHHHHHHHHHh
Confidence 334433456788888888843 3 232 23778877 34457899999999988764
No 110
>PRK06959 putative threonine-phosphate decarboxylase; Provisional
Probab=50.96 E-value=43 Score=25.16 Aligned_cols=52 Identities=17% Similarity=0.236 Sum_probs=35.9
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
|-++. =+..+.++|.++| .+|... +..+++|+.+. .+.++++.+++.+.++-
T Consensus 280 ~~~~~-~~~~l~~~l~~~G-I~vr~~---~~~~~lRisi~---~~~~e~~~l~~al~~~~ 331 (339)
T PRK06959 280 WTDDP-RAAALHAALARRG-IWTRYF---APPPSVRFGLP---ADEAEWQRLEDALAECV 331 (339)
T ss_pred EEeCC-CHHHHHHHHHhCC-eEEEEC---CCCCeEEEECC---CCHHHHHHHHHHHHHHH
Confidence 54443 2457889999999 666544 23468997742 35679999999887764
No 111
>PRK02936 argD acetylornithine aminotransferase; Provisional
Probab=50.58 E-value=48 Score=24.81 Aligned_cols=46 Identities=15% Similarity=0.327 Sum_probs=30.9
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+...+.++|-+ + .|. ..+++|+.+ +...|.+++|.+++-|+++
T Consensus 331 ~~~~~~~l~~~gv~-v--~~~--g~~~lRi~p-~~~~~~~~i~~~i~~l~~~ 376 (377)
T PRK02936 331 VAPVIEQLREEGLL-V--LSA--GPNVIRLLP-PLVVTKEELDQAVYLLKKV 376 (377)
T ss_pred HHHHHHHHHHCCeE-E--ecC--CCCEEEEEC-CcccCHHHHHHHHHHHHHh
Confidence 45566777778833 3 221 247899763 2357899999999988764
No 112
>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=49.52 E-value=46 Score=25.88 Aligned_cols=46 Identities=13% Similarity=0.304 Sum_probs=29.3
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHhccc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerlG~d 81 (82)
+..+..+|.++| +++... +|=.| .+|. .|++|+|.+++-+++.-+.
T Consensus 375 ~~~l~~~l~~~G-v~v~~~-----~~~lR---~~p~l~~t~edId~~v~~l~~al~~ 422 (423)
T PRK05964 375 GPALRAFALERG-VLLRPL-----GNTIY---LMPPYIITAEELDRITDAIVEVADE 422 (423)
T ss_pred HHHHHHHHHHCC-eEEEec-----CCEEE---EeCCcccCHHHHHHHHHHHHHHHhh
Confidence 345666677777 444431 23233 3354 8899999999999876443
No 113
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=49.51 E-value=17 Score=30.39 Aligned_cols=48 Identities=21% Similarity=0.434 Sum_probs=38.9
Q ss_pred HHhhccccceeecCCCCC-----CCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 33 RMMKSGSMMITYQPIHAL-----PNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 33 rM~~~Gs~MV~YqPl~~~-----~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|-++.|++..++-|-.++ -+--|+.+.-..-|.+.|||+++.+.+|-+
T Consensus 391 RavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e 443 (471)
T COG3033 391 RAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE 443 (471)
T ss_pred eeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHh
Confidence 567899999999987533 278898876566889999999999998854
No 114
>PHA02698 hypothetical protein; Provisional
Probab=49.18 E-value=11 Score=24.92 Aligned_cols=19 Identities=32% Similarity=0.534 Sum_probs=15.8
Q ss_pred CCChhhHHHHHHHHHHhcc
Q psy2616 62 ALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 62 ~~t~~dmD~ll~eIerlG~ 80 (82)
-+|.+.||.++.|++.+++
T Consensus 65 LLsqEEMdELl~Eledlar 83 (89)
T PHA02698 65 LLSQEEMDELLVELEDLAR 83 (89)
T ss_pred HhhHHHHHHHHHHHHHHHH
Confidence 3678889999999998875
No 115
>PTZ00125 ornithine aminotransferase-like protein; Provisional
Probab=48.93 E-value=57 Score=24.56 Aligned_cols=46 Identities=15% Similarity=0.338 Sum_probs=31.5
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+..++.++| ..+ .|. .++.+|+.. .-..+.+++|.+++-|++.
T Consensus 347 ~~~~~~~l~~~G-v~v--~~~--~~~~lRi~~-~~~~~~~~i~~~l~~l~~~ 392 (400)
T PTZ00125 347 AWDLCLKLKENG-LLA--KPT--HDNIIRFAP-PLVITKEQLDQALEIIKKV 392 (400)
T ss_pred HHHHHHHHHHCC-eEE--eec--CCCEEEEEC-CccCCHHHHHHHHHHHHHH
Confidence 345667777888 333 242 358899763 2247899999999988764
No 116
>PRK07495 4-aminobutyrate aminotransferase; Provisional
Probab=48.77 E-value=50 Score=26.12 Aligned_cols=47 Identities=13% Similarity=0.278 Sum_probs=32.6
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
++..+..+|.++| +++... +..+|=.|+. |. .|++++|.+++-+++.
T Consensus 370 ~~~~~~~~~~~~G-vl~~~~--g~~~~~~r~~---Ppl~it~~~id~~~~~l~~~ 418 (425)
T PRK07495 370 FANRVRLKALEKG-LILLTC--GVHGNVIRFL---APITIQDDVFAEALDILEAS 418 (425)
T ss_pred HHHHHHHHHHHCC-eEEeec--CCCCCEEEEe---CCCccCHHHHHHHHHHHHHH
Confidence 3456778888999 555432 2235666654 54 7899999999988765
No 117
>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase. Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.
Probab=48.74 E-value=59 Score=25.40 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=31.9
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+..++..+| +++... +..+|-.|+. .+-..|++|+|.+++-+++.
T Consensus 362 ~~~~~~~~~~~G-v~v~~~--~~~~~~lr~~-p~l~~t~~~i~~~~~~l~~~ 409 (412)
T TIGR02407 362 AGKIAKAAFENG-LIIETS--GPNDEVIKLL-PPLTIDEETLQQGLDILEQA 409 (412)
T ss_pred HHHHHHHHHHCC-CEEecc--CCCCCEEEEE-CCCCCCHHHHHHHHHHHHHH
Confidence 456778888888 555321 2123555644 33458999999999998875
No 118
>PRK08593 4-aminobutyrate aminotransferase; Provisional
Probab=48.72 E-value=50 Score=26.28 Aligned_cols=48 Identities=21% Similarity=0.278 Sum_probs=33.4
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.+..+..+|.++| +++. |. .+|-.|+. .....|++|+|.+++-+++.-
T Consensus 380 ~~~~~~~~~~~~G-v~~~--~~--~~~~lr~~-p~l~~t~~~id~~~~~l~~~l 427 (445)
T PRK08593 380 AALKICNYCFEHG-VVII--AV--AGNVLRFQ-PPLVITYEQLDTALNTIEQAF 427 (445)
T ss_pred HHHHHHHHHHHCC-eEEe--cc--CCCEEEEE-CCCccCHHHHHHHHHHHHHHH
Confidence 3556888899999 4443 22 24667755 334688999999999888753
No 119
>PRK00451 glycine dehydrogenase subunit 1; Validated
Probab=48.59 E-value=56 Score=25.24 Aligned_cols=50 Identities=12% Similarity=0.277 Sum_probs=30.9
Q ss_pred HHHHHHHhhcccc-ceeecCC-CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSM-MITYQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~-MV~YqPl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.++|.++|-. .+-..|. ++..+.+|+.+ ....|++|||.+++.+.++
T Consensus 394 ~~~~~~L~~~gi~~~~~~~~~~~~~~~~~rvs~-~~~~t~e~i~~l~~~L~~~ 445 (447)
T PRK00451 394 EEVNEALLEKGILGGYDLGRYYPELGNHLLVCV-TEKRTKEDIDALVAALGEV 445 (447)
T ss_pred HHHHHHHHhcCCCCCcccccccCCcCCEEEEec-CCCCCHHHHHHHHHHHHHH
Confidence 5677888887632 1111111 12245677553 3347899999999999865
No 120
>PLN02624 ornithine-delta-aminotransferase
Probab=48.49 E-value=53 Score=26.34 Aligned_cols=46 Identities=11% Similarity=0.260 Sum_probs=32.8
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+-.+..+|.+.| +++. |. .++..|+.. +...|++++|.+++-+++.
T Consensus 396 a~~~~~~L~e~G-V~v~--p~--~~~~lR~~p-~l~~t~e~id~~l~~L~~~ 441 (474)
T PLN02624 396 AYDVCLKLKERG-LLAK--PT--HDTIIRLAP-PLSISEDELQECSKALSDV 441 (474)
T ss_pred HHHHHHHHHhCC-eEEe--cC--CCCEEEEEC-CccCCHHHHHHHHHHHHHH
Confidence 345677888899 4443 32 368889773 3368899999999988754
No 121
>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=48.20 E-value=55 Score=26.25 Aligned_cols=49 Identities=20% Similarity=0.368 Sum_probs=33.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
++..+..+|.++| +++. |.+..+|=.|+. .+-..|++++|++++-+++.
T Consensus 403 ~~~~~~~~~~~~G-vl~~--~~~~~~~~l~~~-Ppl~it~~eid~~~~~l~~~ 451 (459)
T PRK06931 403 LAAAIQKACFENG-LLLE--RGGRNGNVVRLL-PPLLITQAECEEFIDRFEQA 451 (459)
T ss_pred HHHHHHHHHHHCC-cEEe--ecCCCCCEEEEE-CCCCcCHHHHHHHHHHHHHH
Confidence 4557788899999 4443 222234555544 23458999999999998875
No 122
>TIGR01366 serC_3 phosphoserine aminotransferase, putative. This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.
Probab=48.20 E-value=53 Score=25.16 Aligned_cols=50 Identities=14% Similarity=0.279 Sum_probs=34.1
Q ss_pred HHHHHHhhccccceeecCCCC-CCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 29 KIKERMMKSGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~-~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
.+.+++-.+| +++ +.++.. .++-||+-+ ..-.|.+|+|.+++.|+.+-+.
T Consensus 310 ~v~~~L~~~g-I~i-~~~~~~l~~~~vRis~-~~~~t~~di~~l~~al~~~~~~ 360 (361)
T TIGR01366 310 TVAKILRANG-IVD-TEPYRKLGRNQLRVAM-FPAIDPDDVEALTECVDWVVER 360 (361)
T ss_pred HHHHHHHHCC-Cee-ccCccccCCCcEEEEc-CCCCCHHHHHHHHHHHHHHHhh
Confidence 3666776676 555 334322 256899774 4578999999999999886543
No 123
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=47.91 E-value=18 Score=30.55 Aligned_cols=19 Identities=16% Similarity=0.632 Sum_probs=16.9
Q ss_pred ecCCCCChhhHHHHHHHHH
Q psy2616 58 LQNSALDHSDMDYFIDEIE 76 (82)
Q Consensus 58 ~~np~~t~~dmD~ll~eIe 76 (82)
.-||.+|++|+||||+++.
T Consensus 295 ~~~~~~~~eEidyll~~~~ 313 (532)
T COG0578 295 PEDPRITEEEIDYLLDAVN 313 (532)
T ss_pred cccCCCCHHHHHHHHHHHH
Confidence 3578899999999999998
No 124
>PRK08056 threonine-phosphate decarboxylase; Provisional
Probab=47.79 E-value=53 Score=24.59 Aligned_cols=55 Identities=2% Similarity=0.160 Sum_probs=34.8
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCC-CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++..-...+.+.|.+.|-+......- +..++|+|+.+. +.++++.+++.+.++
T Consensus 297 ~~~~~~~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~~----~~~~~~~l~~~l~~~ 352 (356)
T PRK08056 297 FLRCERPDIDLQRALLTQRILIRSCANYPGLDSRYYRVAIR----SAAENERLLAALRNV 352 (356)
T ss_pred EEEcCCChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEEEc----CHHHHHHHHHHHHHH
Confidence 4444322456788888888444333221 223579998865 457888888888775
No 125
>PRK08360 4-aminobutyrate aminotransferase; Provisional
Probab=47.58 E-value=59 Score=25.88 Aligned_cols=47 Identities=21% Similarity=0.326 Sum_probs=33.0
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+..+|.++| +++.. . .+|-.|+. -+-..|++|+|.+++-+++.
T Consensus 377 ~~~~~~~~l~~~G-i~~~~--~--~~~~lr~~-P~l~~t~~~id~~~~~l~~~ 423 (443)
T PRK08360 377 EAAKVVWRAWELG-LIVTF--F--SGNVLRIQ-PPLTIEKEVLDEGLDILEEA 423 (443)
T ss_pred HHHHHHHHHHHCC-eEEee--c--CCCEEEEe-CCCCCCHHHHHHHHHHHHHH
Confidence 4557889999999 55542 1 24666644 23458899999999988775
No 126
>TIGR01979 sufS cysteine desulfurases, SufS subfamily. This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.
Probab=47.53 E-value=40 Score=25.36 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=32.8
Q ss_pred HHHHHHHhhccccceee-----cCC---CCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMMKSGSMMITY-----QPI---HALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~Y-----qPl---~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
..+.++|-+.| ..|.. +|. .+.+...|+.+. .-.|.+|+|.+++.|+++.+.
T Consensus 342 ~~~~~~L~~~g-I~v~~g~~~~~~~~~~~~~~~~iRiS~~-~~~t~~di~~l~~~l~~~~~~ 401 (403)
T TIGR01979 342 HDVGTILDEEG-IAVRSGHHCAQPLMRRFGVPATCRASFY-IYNTEEDIDALVEALKKVRKF 401 (403)
T ss_pred HHHHHHHhhCC-EEEcchhhhhHHHHHHhCCCCEEEEEec-cCCCHHHHHHHHHHHHHHHHH
Confidence 35666666666 55542 110 122457897653 335899999999999887654
No 127
>PRK14808 histidinol-phosphate aminotransferase; Provisional
Probab=47.43 E-value=41 Score=25.17 Aligned_cols=48 Identities=10% Similarity=0.135 Sum_probs=31.8
Q ss_pred hhhhhc-chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 20 SSSSLQ-VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 20 ~~kL~k-Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
|-++.. -+..+.++|.+.| ..|... .+++|+.+.+ .+++|.+++.+..
T Consensus 285 ~~~l~~~~~~~~~~~l~~~G-i~V~~~-----~~~~Risi~~----~~~~~~~~~~l~~ 333 (335)
T PRK14808 285 FIFMEKEEKERLLEHLRAKN-IAVRSF-----REGVRITIGK----REENDMILKELEV 333 (335)
T ss_pred EEeCCCccHHHHHHHHHHCC-eEEEEC-----CCCeEEecCC----HHHHHHHHHHHHh
Confidence 544532 2356778888888 555543 2688977543 4789999988764
No 128
>PF01765 RRF: Ribosome recycling factor; InterPro: IPR023584 The ribosome recycling factor or ribosome release factor (RRF) dissociates ribosomes from mRNA after termination of translation, and is essential for bacterial growth []. Thus ribosomes are 'recycled' and ready for another round of protein synthesis. This entry represents a domain found in ribosome recycling factors.; PDB: 3R8N_Y 1Y69_8 1ISE_A 1EK8_A 1DD5_A 1WIH_A 2Z4L_6 2QBE_6 2V46_Y 1EH1_A ....
Probab=47.37 E-value=25 Score=24.53 Aligned_cols=49 Identities=12% Similarity=0.256 Sum_probs=37.0
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
....|...+..++ .+++|.. .|+..|+.+ |.+|.|.=..++.++.++++
T Consensus 56 ~i~~I~kAI~~s~---l~l~p~~-d~~~i~v~i--P~~T~E~R~~l~k~~k~~~E 104 (165)
T PF01765_consen 56 LIKAIEKAIQKSN---LNLNPQN-DGNTIRVPI--PPPTEERRKELVKQAKKIAE 104 (165)
T ss_dssp HHHHHHHHHHHTT---SSSEEEE-ETTEEEEE----SSSHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHCC---CCCCccc-CCcEEEEEC--CCCCHHHHHHHHHHHHHHHH
Confidence 4557777788887 2888873 369999887 99999999999988887764
No 129
>PLN02955 8-amino-7-oxononanoate synthase
Probab=47.21 E-value=70 Score=26.51 Aligned_cols=51 Identities=20% Similarity=0.208 Sum_probs=34.9
Q ss_pred hHHHHHHHhhccccceeec--CCCCCC-CcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQ--PIHALP-NFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~Yq--Pl~~~~-NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+-.+.++|.++| ++|.-. |--..+ -=.|++ .+..-|++|+|.+++-+.++.
T Consensus 406 a~~~~~~L~~~G-i~v~~i~yPtVP~g~~rLRi~-lsA~Ht~edId~lv~~L~~~~ 459 (476)
T PLN02955 406 ALKASRYLLKSG-FHVMAIRPPTVPPNSCRLRVT-LSAAHTTEDVKKLITALSSCL 459 (476)
T ss_pred HHHHHHHHHHCC-CEEEEECCCCCCCCCceEEEe-eCCCCCHHHHHHHHHHHHHHH
Confidence 345678999999 665532 222111 357866 467789999999999998764
No 130
>PRK07036 hypothetical protein; Provisional
Probab=46.96 E-value=44 Score=26.84 Aligned_cols=44 Identities=14% Similarity=0.428 Sum_probs=30.1
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCC--ChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSAL--DHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~--t~~dmD~ll~eIerl 78 (82)
.+..+..++.++| +++. |. +| ++..+|.+ |++|+|++++-+++.
T Consensus 404 ~~~~~~~~~~~~G-vl~~--~~---~~---~~~l~Ppl~it~~~id~~~~~l~~a 449 (466)
T PRK07036 404 IGQRIDRHCQERG-LLVR--PL---EH---LCVLSPPLIITRAQIDEIVAILRAA 449 (466)
T ss_pred HHHHHHHHHHHCC-cEEe--ec---CC---EEEEeCCCcCCHHHHHHHHHHHHHH
Confidence 4557888899999 4443 32 23 23345765 999999999888654
No 131
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=46.66 E-value=26 Score=28.23 Aligned_cols=48 Identities=21% Similarity=0.450 Sum_probs=36.4
Q ss_pred HHhhccccceeecCCCC-----CCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 33 RMMKSGSMMITYQPIHA-----LPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 33 rM~~~Gs~MV~YqPl~~-----~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+.+.-|+++.+..|..+ ..+|.|+.++==.-|.++||++.+-|..+.+
T Consensus 380 ~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~ 432 (460)
T PRK13238 380 RGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE 432 (460)
T ss_pred eeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH
Confidence 34566788888876554 3599999986334699999999999988753
No 132
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated
Probab=46.51 E-value=25 Score=22.22 Aligned_cols=53 Identities=9% Similarity=0.171 Sum_probs=39.3
Q ss_pred hhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 22 SSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 22 kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
=|++||..+..|-..=-|+-+|.. +.+++.|+.+.-. -++..++-+..++++|
T Consensus 15 VL~Ri~~lf~rRgfNI~Sl~vg~t---e~~~~sriti~~~-~~~~~i~qi~kQL~KL 67 (76)
T PRK06737 15 VLLRISGIFARRGYYISSLNLNER---DTSGVSEMKLTAV-CTENEATLLVSQLKKL 67 (76)
T ss_pred HHHHHHHHHhccCcceEEEEeccc---CCCCeeEEEEEEE-CCHHHHHHHHHHHhCC
Confidence 466777777777766666766643 4679999987644 3778899999999886
No 133
>PRK07482 hypothetical protein; Provisional
Probab=46.25 E-value=60 Score=25.98 Aligned_cols=48 Identities=10% Similarity=0.293 Sum_probs=32.7
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
++..|..++.++| +++...| .+|-.|+. ..-..|++|+|.+++-+++.
T Consensus 404 ~~~~i~~~~~~~G-vl~~~~~---~~~~i~~~-Ppl~it~~ei~~~~~~l~~~ 451 (461)
T PRK07482 404 IGPQVSAAALERG-VIARAMP---HGDILGFA-PPLVLTRAEADEIVAIAKDA 451 (461)
T ss_pred HHHHHHHHHHHCC-cEEecCC---CCCEEEEe-CCCCCCHHHHHHHHHHHHHH
Confidence 4567888999999 5554333 24545533 23458899999999888764
No 134
>PLN03227 serine palmitoyltransferase-like protein; Provisional
Probab=45.90 E-value=45 Score=25.86 Aligned_cols=52 Identities=15% Similarity=0.315 Sum_probs=33.0
Q ss_pred HHHHHHHhhccccceee--cCC---CCC-CCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 28 PKIKERMMKSGSMMITY--QPI---HAL-PNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~Y--qPl---~~~-~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
-.+.++|.++|-++... .|. +-. +-=.|++ .+...|++|+|.+++-++++-+
T Consensus 324 ~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~-~~~~~t~eei~~~~~~l~~~~~ 381 (392)
T PLN03227 324 DQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVV-ANASHTREDIDKLLTVLGEAVE 381 (392)
T ss_pred HHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEE-ecCCCCHHHHHHHHHHHHHHHH
Confidence 47889999999444221 110 000 1223544 4667799999999999988654
No 135
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. This CD includes the second of the two ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains. The glycine cleavage enzyme system in Escherichia coli provides one-carbon units for cellular methylation reactions. This enzyme system, encoded by the gcvTHP operon and lpd gene, catalyzes the cleavage of glycine into CO2 + NH3 and transfers a one-carbon unit to tetrahydrofolate, producing 5,10-methylenetetrahydrofolate. The gcvTHP operon is activated by the GcvA protein in response to glycine and repressed by a GcvA/GcvR interaction in the absence of glycine. It has been proposed that the co-activator glycine acts through a mechanism of de-repression by binding to GcvR and preventing GcvR from interacting with GcvA to block GcvA's activator function. Evidence also suggests that GcvR in
Probab=45.88 E-value=50 Score=19.29 Aligned_cols=50 Identities=20% Similarity=0.229 Sum_probs=29.7
Q ss_pred HHHHHhhccccceeecCCCC-----C-CCcc-eEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 30 IKERMMKSGSMMITYQPIHA-----L-PNFF-RLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 30 IKerM~~~Gs~MV~YqPl~~-----~-~NFF-R~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
|..-+...|-...+.+-... . +.|+ |+.+.-|. ..+++.+.+++++++++
T Consensus 16 it~~l~~~~~nI~~~~~~~~~~~~~~~~~~~~~~~v~~p~--~~~~~~l~~~l~~l~~~ 72 (81)
T cd04869 16 VTQFLAQRNINIEDLSTETYSAPMSGTPLFKAQATLALPA--GTDLDALREELEELCDD 72 (81)
T ss_pred HHHHHHHcCCCeEEeEeeeecCCCCCcceEEEEEEEecCC--CCCHHHHHHHHHHHHHH
Confidence 44555566766666654321 1 3443 66666553 34678888888888764
No 136
>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional
Probab=45.64 E-value=71 Score=23.64 Aligned_cols=53 Identities=23% Similarity=0.433 Sum_probs=33.8
Q ss_pred hHHHHHHHhhccccceee-cCCC-CCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 27 APKIKERMMKSGSMMITY-QPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~Y-qPl~-~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+-.+.+++.++|=...+. .|.. ...+++|+.++ ...+.++|+.+++.|..+-+
T Consensus 338 ~~~~~~~L~~~gI~v~~~~~~~~~~~~~~iRi~~~-~~~~~~~i~~~l~~L~~~~~ 392 (397)
T PRK06939 338 AQEFADRLLEEGVYVIGFSFPVVPKGQARIRTQMS-AAHTKEQLDRAIDAFEKVGK 392 (397)
T ss_pred HHHHHHHHHHCCceEeeeCCCCCCCCCceEEEEEC-CCCCHHHHHHHHHHHHHHHH
Confidence 346778888888333321 1221 22478997753 33579999999999987643
No 137
>PRK09082 methionine aminotransferase; Validated
Probab=44.60 E-value=47 Score=25.15 Aligned_cols=55 Identities=7% Similarity=0.128 Sum_probs=30.8
Q ss_pred hhhhhhcc----hHHHHHHHhh-ccccce-e---ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 19 NSSSSLQV----APKIKERMMK-SGSMMI-T---YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 19 ~~~kL~kV----ap~IKerM~~-~Gs~MV-~---YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
.|-++.++ +-.+.+++.+ .| ++| . |...+...+|||+.++. ++++++..++.|.+
T Consensus 322 ~~~~~~~~~~~~~~~~~~~l~~~~~-v~v~pg~~f~~~~~~~~~~Ri~~~~---~~~~l~~~~~rl~~ 385 (386)
T PRK09082 322 QLVDYSAISDLDDVEFCQWLTREHG-VAAIPLSVFYADPFPHRLVRLCFAK---QEETLDAAAERLCQ 385 (386)
T ss_pred EEEeccccCCCCHHHHHHHHHHhCC-EEEeCcHHhCCCCCCCCEEEEEecC---CHHHHHHHHHHHhh
Confidence 36555432 4457677654 45 443 2 21112235899999864 36777777666654
No 138
>PRK07046 aminotransferase; Validated
Probab=44.46 E-value=54 Score=26.31 Aligned_cols=44 Identities=18% Similarity=0.385 Sum_probs=31.0
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
....+...|.++| +++. |. .+.++ .+|+.|++|+|++++-+++.
T Consensus 404 ~~~~~~~~~~~~G-v~~~--~~---~~~~~---~~p~~t~~did~~~~~~~~~ 447 (453)
T PRK07046 404 LEAALHLYLLNRG-VLIT--PF---HNMML---VCPATTAADVDRLVAAFDAC 447 (453)
T ss_pred HHHHHHHHHHHCC-CEEe--cc---cCcEE---EeCCCCHHHHHHHHHHHHHH
Confidence 3456778899999 4443 32 24333 35779999999999988765
No 139
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=44.42 E-value=49 Score=25.23 Aligned_cols=47 Identities=19% Similarity=0.281 Sum_probs=33.4
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
..+.++|.+.|=..+ - ++.++-||++. ...|.+|+|.+++.++++.+
T Consensus 334 ~~~~~~L~~~gI~~~--~--~~~~~i~ri~~--~g~t~~di~~l~~aL~~i~~ 380 (387)
T PRK09331 334 FFLYEELKKRGIHGI--K--PGATKEFKLST--YGLTWEQVEYVADAFKEIAE 380 (387)
T ss_pred hhHHHHHHHcCceEE--c--cCCceEEEEEe--ccCCHHHHHHHHHHHHHHHH
Confidence 347788888884322 1 24568888664 44799999999999988754
No 140
>PRK02948 cysteine desulfurase; Provisional
Probab=44.30 E-value=24 Score=26.42 Aligned_cols=29 Identities=21% Similarity=0.464 Sum_probs=23.8
Q ss_pred CCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 51 PNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 51 ~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
.+.+|+.+ ..-.|++|+|.+++.|+++.+
T Consensus 345 ~~~lRis~-~~~~t~~di~~l~~~l~~~~~ 373 (381)
T PRK02948 345 KQFVRFSF-GQQTTKDQIDTTIHALETIGN 373 (381)
T ss_pred CceEEEEc-CCCCCHHHHHHHHHHHHHHHH
Confidence 47999874 466899999999999987654
No 141
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional
Probab=44.01 E-value=31 Score=22.42 Aligned_cols=53 Identities=9% Similarity=0.194 Sum_probs=38.4
Q ss_pred hhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 23 SLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 23 L~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|++||-.+.+|-..=-|+.+|-. ..+.+-|+.+.-..-++..++-+..+++++
T Consensus 16 L~Rit~lFsRRg~NI~SLtvg~T---e~~~iSRmtivv~~~d~~~ieqI~kQL~Kl 68 (84)
T PRK13562 16 LNRITSAFVRLQYNIDTLHVTHS---EQPGISNMEIQVDIQDDTSLHILIKKLKQQ 68 (84)
T ss_pred HHHHHHHHhccCcCeeeEEeccc---CCCCceEEEEEEeCCCHHHHHHHHHHHhCC
Confidence 56666666666665566666654 457899999876545788889999998876
No 142
>PRK05965 hypothetical protein; Provisional
Probab=43.04 E-value=68 Score=25.68 Aligned_cols=47 Identities=11% Similarity=0.267 Sum_probs=32.4
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
++..+..++.++| +++. |.+ .|+.|+. ..-..|++++|.+++-+++.
T Consensus 398 ~~~~i~~~~~~~G-ll~~--~~g--~~~i~~~-PpL~it~~ei~~~~~~l~~~ 444 (459)
T PRK05965 398 PADRIFDRAYANG-LVFR--AFG--DGVLGFA-PALCCTEGEFDLIFERTRKT 444 (459)
T ss_pred HHHHHHHHHHhCC-eEEE--ecC--CcEEEEE-CCCcCCHHHHHHHHHHHHHH
Confidence 4567888899999 4553 322 4777754 12247899999999988764
No 143
>PRK07480 putative aminotransferase; Validated
Probab=42.88 E-value=67 Score=25.72 Aligned_cols=42 Identities=10% Similarity=0.350 Sum_probs=29.5
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCC--ChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSAL--DHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~--t~~dmD~ll~eIerl 78 (82)
..+..+|.++| +++.. . +|-.| ..|.+ |++|+|.+++-+++.
T Consensus 402 ~~~~~~~~~~G-ll~~~--~---~~~l~---~~Ppl~it~~eid~~~~~l~~a 445 (456)
T PRK07480 402 TICRDHCFANG-LIMRA--V---GDRMI---ISPPLVITHAEIDELVEKARKA 445 (456)
T ss_pred HHHHHHHHHCC-cEEee--c---CCEEE---EECCCCCCHHHHHHHHHHHHHH
Confidence 46778899999 55532 1 34333 34775 899999999988764
No 144
>PRK14012 cysteine desulfurase; Provisional
Probab=42.76 E-value=24 Score=26.92 Aligned_cols=28 Identities=14% Similarity=0.215 Sum_probs=21.8
Q ss_pred CcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 52 NFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 52 NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+..|+. ..+-+|++|+|++++.|.++.+
T Consensus 351 ~~iRls-~~~~~t~~dvd~~~~~l~~~~~ 378 (404)
T PRK14012 351 SSIRFS-LGRFTTEEEIDYAIELVRKSIG 378 (404)
T ss_pred ceEEEE-ecCCCCHHHHHHHHHHHHHHHH
Confidence 566766 4556899999999999988653
No 145
>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed
Probab=42.24 E-value=51 Score=24.63 Aligned_cols=53 Identities=8% Similarity=0.033 Sum_probs=31.9
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCC-CCCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPI-HALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl-~~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
|-++..-+..+.+++.+.|-+...-..- ...+++||+.+++ +.++++..++-|
T Consensus 309 ~~~~~~~~~~~~~~l~~~gv~v~pg~~f~~~~~~~iRi~~~~---~~~~~~~~~~~l 362 (364)
T PRK07865 309 WATRGEDCWDTVAWLAERGILVAPGDFYGPAGAQHVRVALTA---TDERIAAAVERL 362 (364)
T ss_pred EEeCCCCHHHHHHHHHHCCEEEeCccccCcCCCCEEEEEecC---CHHHHHHHHHHh
Confidence 4444333456677888888544331111 1236899999865 368888877655
No 146
>PRK00011 glyA serine hydroxymethyltransferase; Reviewed
Probab=41.80 E-value=66 Score=24.50 Aligned_cols=52 Identities=8% Similarity=0.162 Sum_probs=33.4
Q ss_pred hHHHHHHHhhcccccee--ecCCC----CCCCcceEeec---CCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMIT--YQPIH----ALPNFFRLVLQ---NSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~--YqPl~----~~~NFFR~V~~---np~~t~~dmD~ll~eIerlG 79 (82)
+..+++.+.+.| ..|. |-|.. ..++-+|+... ....|.+|+|++++.|+++-
T Consensus 327 ~~~~~~~L~~~G-I~v~~~~~p~~~~~~~~~~~~Ri~~~~~~~~~~t~~di~~l~~~l~~~~ 387 (416)
T PRK00011 327 GKEAEAALEEAN-ITVNKNAVPFDPRSPFVTSGIRIGTPAITTRGFKEAEMKEIAELIADVL 387 (416)
T ss_pred HHHHHHHHHHcC-cEEccCcCCCCCCCCCCCCceEecCHHHhhcCcCHHHHHHHHHHHHHHH
Confidence 356777887888 5554 22331 12456896421 12578999999999998863
No 147
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=41.75 E-value=87 Score=23.97 Aligned_cols=46 Identities=17% Similarity=0.314 Sum_probs=31.7
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.++| ..+. |. ..+++|+.++ ...|++++|.+++-|.++
T Consensus 352 ~~~~~~~l~~~G-v~v~--~~--g~~~lRl~~~-~~~~~~~i~~~~~~l~~~ 397 (403)
T PRK05093 352 ARDFLNAAAEEG-VMVL--VA--GPDVLRFAPS-LVIEEADIDEGLARFEKA 397 (403)
T ss_pred HHHHHHHHHHCC-eEEe--cC--CCCEEEEeCC-CCCCHHHHHHHHHHHHHH
Confidence 445667788888 4443 32 2478997643 346899999999988775
No 148
>PLN00144 acetylornithine transaminase
Probab=41.05 E-value=62 Score=24.97 Aligned_cols=48 Identities=13% Similarity=0.206 Sum_probs=33.1
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+-.+..++.++| +.| .|.+ .+|.+|+.+ .-..|++++|..++-++++-
T Consensus 331 ~~~~~~~~~~~G-v~i--~~~~-~~~~lrl~p-~~~~~~~~i~~~~~~l~~~l 378 (382)
T PLN00144 331 AGPLVDACRDSG-LLV--LTAG-KGDVVRLVP-PLVISEAELEQAVEILADCL 378 (382)
T ss_pred cHHHHHHHHHCC-eEE--eecC-CCCEEEEeC-CCccCHHHHHHHHHHHHHHH
Confidence 456778888899 333 3432 258888664 12377999999999988763
No 149
>PRK02610 histidinol-phosphate aminotransferase; Provisional
Probab=40.89 E-value=63 Score=24.42 Aligned_cols=43 Identities=5% Similarity=0.147 Sum_probs=29.1
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.+++.+.| ..|.. ..+|+|+.+.. .++++..++.|.++-
T Consensus 327 ~~~~~~~l~~~g-i~v~~-----~~~~lRls~~~----~~~~~~~l~~l~~~l 369 (374)
T PRK02610 327 LAALHQALKAQG-TLVRH-----TGGGLRITIGT----PEENQRTLERLQAAL 369 (374)
T ss_pred HHHHHHHHHHCC-EEEEe-----CCCeEEEeCCC----HHHHHHHHHHHHHHH
Confidence 356777888888 45543 24799988764 356788888777653
No 150
>cd06410 PB1_UP2 Uncharacterized protein 2. The PB1 domain is a modular domain mediating specific protein-protein interaction which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domain depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic aminoacid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions.
Probab=40.77 E-value=53 Score=21.50 Aligned_cols=46 Identities=22% Similarity=0.325 Sum_probs=30.8
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
++.+..--...+.+.||-..+.-+ .+| +..+.+|+..+++|.+++.
T Consensus 41 kl~~~~~~~~~~~lky~Lp~edld--~Li---sv~~DeDl~~M~~e~~~~~ 86 (97)
T cd06410 41 KLSELFGAGVVVTLKYQLPDEDLD--ALI---SVSNDEDLKNMMEEYDRLS 86 (97)
T ss_pred HHHHHhCCCCceEEEEEcCCCCcc--eeE---EecCcHHHHHHHHhhcccc
Confidence 333433333336789985554445 555 6778999999999999763
No 151
>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase. This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.
Probab=40.68 E-value=59 Score=25.02 Aligned_cols=45 Identities=18% Similarity=0.240 Sum_probs=29.8
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.++|.+.| +.|. |-. .+-.| .+|..|++++|.+++-+++.=
T Consensus 376 ~~~~~~~l~~~G-v~v~--~~~--~~~~~---l~~~~t~~~i~~~~~~l~~~l 420 (423)
T TIGR00713 376 FAKFFHEMLDKG-VFLP--PSQ--FEACF---LSAAHTEEDIENTIEAAEEVF 420 (423)
T ss_pred HHHHHHHHHHCC-eEEe--cCC--cccee---eECCCCHHHHHHHHHHHHHHH
Confidence 346778899999 4453 211 12223 346689999999999888753
No 152
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=40.60 E-value=75 Score=23.68 Aligned_cols=45 Identities=20% Similarity=0.477 Sum_probs=32.1
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.+.++|.++| ..+ .-| +..+.+|+.+ +..|.+|+|.+++-|+.+.
T Consensus 316 ~~~~~L~~~g-I~~-~~~--~~~~~~ri~~--~g~~~e~~~~l~~al~~~~ 360 (361)
T cd06452 316 FLYSELKKRG-IHG-IKP--GLTRYFKLST--YGLTWEQVEYVVDAFKEIA 360 (361)
T ss_pred hHHHHHHHcC-ceE-EcC--CCceEEEEEe--cCCCHHHHHHHHHHHHHHh
Confidence 4778888888 333 222 4457888664 5568999999999998653
No 153
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. This CD includes the C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains. The Escherichia coli tdcB gene product, ThrD-II, anaerobically catalyzes the pyridoxal phosphate-dependent dehydration of L-threonine and L-serine to ammonia and to alpha-ketobutyrate and pyruvate, respectively. Tetrameric ThrD-II is subject to allosteric activation by AMP, inhibition by alpha-keto acids, and catabolite inactivation by several metabolites of glycolysis and the citric acid cycle. Also included in this CD are N-terminal ACT domains present in smaller (~170 a.a.) archaeal proteins of unknown function. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=40.33 E-value=64 Score=17.59 Aligned_cols=17 Identities=12% Similarity=0.274 Sum_probs=14.1
Q ss_pred ChhhHHHHHHHHHHhcc
Q psy2616 64 DHSDMDYFIDEIERLGH 80 (82)
Q Consensus 64 t~~dmD~ll~eIerlG~ 80 (82)
..++++.+++.|...|-
T Consensus 53 ~~~~l~~l~~~l~~~g~ 69 (73)
T cd04886 53 GAEHIEEIIAALREAGY 69 (73)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 46889999999988774
No 154
>PRK11633 cell division protein DedD; Provisional
Probab=40.14 E-value=89 Score=23.50 Aligned_cols=50 Identities=14% Similarity=0.196 Sum_probs=36.7
Q ss_pred hHHHHHHHhhccccceeecCC-CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-.+..++..+| +-.-..|. ...|.+.|+. .=|-.+++.++..+.+++++
T Consensus 163 A~~l~~kL~~~G-~~Ay~~~~~~~~G~~tRV~-VGP~~sk~~ae~~~~~Lk~~ 213 (226)
T PRK11633 163 VNEIVAKLRLSG-YRVYTVPSTPVQGKITRIY-VGPDASKDKLKGSLGELKQL 213 (226)
T ss_pred HHHHHHHHHHCC-CeeEEEeeecCCCcEEEEE-eCCCCCHHHHHHHHHHHHHh
Confidence 456778999999 33222232 2446788955 67999999999999999997
No 155
>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional
Probab=39.98 E-value=40 Score=26.92 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=30.7
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
-.+...|.++| +.+.. .. +-. .+.|..-|++|+|.+++-+++.-++
T Consensus 383 ~~~~~~l~~~G-v~~~~--~~----~~~-~~ls~~ht~~did~~~~a~~~~~~~ 428 (433)
T PRK00615 383 QTFYQSAFSKG-VYLSP--SP----FEA-SFLSSAHSMENLDYAQNVLIDSLEK 428 (433)
T ss_pred HHHHHHHHHCC-eeecC--cc----ccc-cceecCCCHHHHHHHHHHHHHHHHH
Confidence 36778889999 43322 11 111 1346777999999999999987543
No 156
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=39.85 E-value=84 Score=24.16 Aligned_cols=46 Identities=20% Similarity=0.339 Sum_probs=32.0
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.++|-+... .+ ++..|+. .+-..|++|+|.+++-+++.
T Consensus 347 ~~~~~~~l~~~Gv~~~~---~g--~~~lR~~-p~~~~t~~~i~~~~~~l~~~ 392 (397)
T TIGR03246 347 AKQFVNAAAEEGVIALI---AG--PNVVRFA-PSLVISDDDIDEGLARFERA 392 (397)
T ss_pred HHHHHHHHHHCCeEEee---cC--CCEEEEe-CCCCCCHHHHHHHHHHHHHH
Confidence 45677788888844332 11 3778865 34457899999999988765
No 157
>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]
Probab=39.61 E-value=76 Score=26.12 Aligned_cols=46 Identities=24% Similarity=0.402 Sum_probs=35.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerlG 79 (82)
.++.+-..+.++| +|+-. ..+|=.|+. |. +|++++|..++-+++.-
T Consensus 349 ~a~~~~~~~~~~g-vL~~~----a~~~ViR~~---PpL~i~~eei~~~~~~l~~~l 396 (404)
T COG4992 349 RARDIVRALREEG-VLVLP----AGPNVIRFL---PPLVITEEEIDEALDALERAL 396 (404)
T ss_pred cHHHHHHHHHHCC-eEEec----CCCCeEEec---CCccCCHHHHHHHHHHHHHHH
Confidence 4778888899999 66655 346767755 54 78999999999998753
No 158
>PF03574 Peptidase_S48: Peptidase family S48; InterPro: IPR005319 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of serine peptidases, which includes HetR, are associated with heterocystous cyanobacteria and belong to MEROPS peptidase family S48 (clan S-). HetR is a DNA-binding serine-type protease required for heterocyst differentiation in heterocystous cyanobacteria under conditions of nitrogen deprivation. Mutation of HetR from of Anabaena sp. (strain PCC 7120) by site-specific mutagenesis of Ser-152 showed that this residue was one of the peptidase active site residues. It was suggested that peptidase activity might be needed for repression of HetR overproduction under conditions of nitrogen deprivation []. Modification of Cys-48 prevented disulphide-bond formation and homodimerisation of HetR and DNA-binding. The homodimer of HetR binds the promoter regions of hetR, hepA, and patS, suggesting a direct control of the expression of these genes by HetR. The pentapeptide RGSGR, which is present at the C terminus of PatS, blocks heterocyst formation, inhibits the DNA binding of HetR and prevents hetR up-regulation [].; GO: 0003677 DNA binding, 0004252 serine-type endopeptidase activity, 0043158 heterocyst differentiation; PDB: 3QOE_A 3QOD_A.
Probab=39.42 E-value=12 Score=26.80 Aligned_cols=36 Identities=31% Similarity=0.429 Sum_probs=24.9
Q ss_pred hHHHHHhcCCCCch----hhhhh-cchHHHHHHHhhccccc
Q psy2616 6 GLLEQLHSQSKNSN----SSSSL-QVAPKIKERMMKSGSMM 41 (82)
Q Consensus 6 ~~~~~l~~~~~~e~----~~kL~-kVap~IKerM~~~Gs~M 41 (82)
.|.|+|+..+.+++ ..-|+ ..|-.||+|+.-+||.+
T Consensus 104 eliefLH~rsQe~lp~~rr~~LSeAlAeHIkRRLlysgTVt 144 (149)
T PF03574_consen 104 ELIEFLHRRSQEDLPPERRMPLSEALAEHIKRRLLYSGTVT 144 (149)
T ss_dssp HHHHHHHHHHHTTS-TTT-----HHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHhhhhhCCccccCcHHHHHHHHHHHHHhhccceE
Confidence 47788877766654 22232 47889999999999876
No 159
>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein. This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.
Probab=39.36 E-value=40 Score=24.94 Aligned_cols=48 Identities=8% Similarity=0.185 Sum_probs=32.4
Q ss_pred HHHHHHHhhc-cccceee----cC-----CC-CCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 28 PKIKERMMKS-GSMMITY----QP-----IH-ALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 28 p~IKerM~~~-Gs~MV~Y----qP-----l~-~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
..+.++|... | +.|+. .+ .+ .....+|+. ..+-.|.+|+|.+++.|..
T Consensus 317 ~~~~~~L~~~~g-i~v~~g~~~~~~~~~~~g~~~~~~iRis-~~~~~t~~dv~~~~~~l~~ 375 (376)
T TIGR01977 317 EEVADILDEKFD-IATRTGLHCAPLAHKTIGTFATGTIRLS-LGYFNTEEEIEKLLEALSE 375 (376)
T ss_pred HHHHHHHhccCC-EEEEcccccchHHHHHhCCCCCCeEEEe-cCCCCCHHHHHHHHHHHhh
Confidence 3566777666 5 45432 11 01 134689988 5678999999999999875
No 160
>PF14085 DUF4265: Domain of unknown function (DUF4265)
Probab=39.34 E-value=38 Score=22.51 Aligned_cols=29 Identities=24% Similarity=0.479 Sum_probs=22.6
Q ss_pred CC-cceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 51 PN-FFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 51 ~N-FFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
|| =+|+++.++.. ++.+.+.++|+++|..
T Consensus 51 GnsTiRv~~~~~~~--~~~~~v~~~l~~lG~~ 80 (117)
T PF14085_consen 51 GNSTIRVIFDDPGP--DDIEAVREELEALGCT 80 (117)
T ss_pred CCEEEEEEEcCCcc--hhHHHHHHHHHHcCCe
Confidence 44 47888766664 8899999999999864
No 161
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=39.32 E-value=44 Score=26.85 Aligned_cols=26 Identities=27% Similarity=0.432 Sum_probs=22.3
Q ss_pred CcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 52 NFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 52 NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..-|+| ++=.+|++|+|.+++.|..+
T Consensus 315 ~~vRfv-ts~a~~~edv~~~~~~~~~~ 340 (342)
T COG2008 315 EIVRFV-TSWATSEEDVDELVAAIKAL 340 (342)
T ss_pred ceEEEE-eeccCCHHHHHHHHHHHHHh
Confidence 577877 77889999999999999875
No 162
>PF12418 AcylCoA_DH_N: Acyl-CoA dehydrogenase N terminal ; InterPro: IPR020953 This entry represents the N-terminal domain of Acyl-CoA dehydrogenase, which is one of the enzymes involved in AcylCoA interaction in beta-oxidation []. The protein is found in association with PF02770 from PFAM, PF00441 from PFAM, PF02771 from PFAM.
Probab=39.05 E-value=34 Score=18.21 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=13.8
Q ss_pred CCChhhHHHHHHHHHHhc
Q psy2616 62 ALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 62 ~~t~~dmD~ll~eIerlG 79 (82)
.....||+|+|.|.-.+.
T Consensus 4 ~ap~rD~~F~L~Evl~~~ 21 (34)
T PF12418_consen 4 KAPLRDMRFVLYEVLDAD 21 (34)
T ss_pred CCcHHHHHHHHHHHHCcH
Confidence 456789999999975543
No 163
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=38.22 E-value=73 Score=26.32 Aligned_cols=49 Identities=24% Similarity=0.455 Sum_probs=37.8
Q ss_pred cchHHHHHHHhhccccceeecCCCCCCCcceEeecCC-CCChhhHHHHHHHHHHh
Q psy2616 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNS-ALDHSDMDYFIDEIERL 78 (82)
Q Consensus 25 kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np-~~t~~dmD~ll~eIerl 78 (82)
..|-.|..++.++|-.+.+.-| .+|=+|+.. | ..|++++|..|+-|++.
T Consensus 393 ~~~~~i~~~~~~~Glil~~~G~---~~nviRi~P--PL~is~e~~d~~l~il~~a 442 (447)
T COG0160 393 ELAAKIVARAFERGLLLLTCGP---HGNVLRILP--PLTISDEELDEGLDILEEA 442 (447)
T ss_pred HHHHHHHHHHHHcCCEEeccCC---CCcEEEEeC--CcccCHHHHHHHHHHHHHH
Confidence 4677899999999977766644 468888661 3 36799999999998865
No 164
>cd00520 RRF Ribosome recycling factor (RRF). Ribosome recycling factor dissociates the posttermination complex, composed of the ribosome, deacylated tRNA, and mRNA, after termination of translation. Thus ribosomes are "recycled" and ready for another round of protein synthesis. RRF is believed to bind the ribosome at the A-site in a manner that mimics tRNA, but the specific mechanisms remain unclear. RRF is essential for bacterial growth. It is not necessary for cell growth in archaea or eukaryotes, but is found in mitochondria or chloroplasts of some eukaryotic species.
Probab=38.17 E-value=75 Score=22.68 Aligned_cols=49 Identities=12% Similarity=0.303 Sum_probs=37.6
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
..+.|....+.++ .|++|..+ |+--|+.+ |.+|.+.=..++..+.+.++
T Consensus 70 ~i~~I~kAI~~s~---l~l~P~~d-g~~iri~i--P~lT~E~R~~lvK~~k~~~E 118 (179)
T cd00520 70 AIKAIEKAILNSD---LGLNPNND-GAVIRVNL--PPLTEERRKELVKDAKKIAE 118 (179)
T ss_pred hHHHHHHHHHHCC---CCCCcCcC-CCEEEecC--CCCCHHHHHHHHHHHHHHHH
Confidence 4556667777777 59999754 78778665 99999988888888777665
No 165
>PF14566 PTPlike_phytase: Inositol hexakisphosphate; PDB: 1U24_A 2PSZ_B 3MOZ_A 3D1H_B 2B4P_B 3D1Q_A 2B4O_A 3MMJ_B 1U25_A 1U26_B ....
Probab=38.02 E-value=32 Score=23.49 Aligned_cols=30 Identities=27% Similarity=0.535 Sum_probs=20.5
Q ss_pred CCcceEeec-CCCCChhhHHHHHHHHHHhcc
Q psy2616 51 PNFFRLVLQ-NSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 51 ~NFFR~V~~-np~~t~~dmD~ll~eIerlG~ 80 (82)
.+++|+-+. .-.++.+|+|.+|+=+..+.+
T Consensus 93 ~~Y~Ripitd~~~P~~~~iD~fi~~v~~~p~ 123 (149)
T PF14566_consen 93 LRYYRIPITDHQAPDPEDIDAFINFVKSLPK 123 (149)
T ss_dssp -EEEEEEE-TTS---HHHHHHHHHHHHTS-T
T ss_pred ceEEEEeCCCcCCCCHHHHHHHHHHHHhCCC
Confidence 479998875 456889999999999887754
No 166
>PRK15481 transcriptional regulatory protein PtsJ; Provisional
Probab=37.39 E-value=84 Score=24.23 Aligned_cols=56 Identities=11% Similarity=0.135 Sum_probs=34.7
Q ss_pred hhhhhcchHHHHHHHhhcccccee---ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMIT---YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~---YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++..=+..+.+++.+.|-.... |.+ ...++++|+.++++ +.++++..++.|.++
T Consensus 370 ~~~l~~~~~~~~~~l~~~gV~v~pg~~f~~-~~~~~~iRis~~~~--~~~~i~~~~~~l~~~ 428 (431)
T PRK15481 370 WLPLDTDSQATALTLAKSGWLVREGEAFGV-SAPSHGLRITLSTL--NDAEINRLAADLHQA 428 (431)
T ss_pred EEECCCCHHHHHHHHHHCCcEEecCCcccc-CCCCCeEEEEcCCC--ChHHHHHHHHHHHHH
Confidence 555532234566777777743332 211 12358999998664 478899988888765
No 167
>PHA01632 hypothetical protein
Probab=37.29 E-value=20 Score=22.39 Aligned_cols=33 Identities=30% Similarity=0.510 Sum_probs=23.3
Q ss_pred HHHHHhcCCCCchhhhhhcchHHHH---HHHhhccccce
Q psy2616 7 LLEQLHSQSKNSNSSSSLQVAPKIK---ERMMKSGSMMI 42 (82)
Q Consensus 7 ~~~~l~~~~~~e~~~kL~kVap~IK---erM~~~Gs~MV 42 (82)
|.|++-..|+++ +|.||-|+|- +.|++.|.+-|
T Consensus 20 lieqvp~kptee---elrkvlpkilkdyanmie~gk~ki 55 (64)
T PHA01632 20 LIEQVPQKPTEE---ELRKVLPKILKDYANMIENGKIKI 55 (64)
T ss_pred ehhhcCCCCCHH---HHHHHHHHHHHHHHHHHhcCceEE
Confidence 345555555554 8999999885 68999997654
No 168
>PRK07392 threonine-phosphate decarboxylase; Validated
Probab=37.25 E-value=1.5e+02 Score=22.11 Aligned_cols=54 Identities=11% Similarity=0.288 Sum_probs=30.4
Q ss_pred hhhhhcchHHHHHHHhh-ccccceeecC-CCC-CCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMK-SGSMMITYQP-IHA-LPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~-~Gs~MV~YqP-l~~-~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++..-+..+.+++.+ .| ..|.--. .+. ..+|||+.+..| ++++.+.+.++++
T Consensus 300 ~~~~~~~~~~l~~~ll~~~g-v~v~pg~~f~~~~~~~iRi~~~~~----~~~~~l~~al~~~ 356 (360)
T PRK07392 300 LVQSQGSALQLQEKLLQQHR-ILIRDCLSFPELGDRYFRVAVRTE----AENQRLLEALAAI 356 (360)
T ss_pred EEEcCCCHHHHHHHHHhhCC-EEEEeCCCCCCCCCCEEEEEeCCH----HHHHHHHHHHHHH
Confidence 43443334567777654 57 4443211 121 258999997653 4566777766665
No 169
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=37.12 E-value=50 Score=24.48 Aligned_cols=44 Identities=14% Similarity=0.431 Sum_probs=26.6
Q ss_pred HHHHHHHhhccccceeecCCCC-CCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 28 PKIKERMMKSGSMMITYQPIHA-LPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~-~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
-.+.++|.+.|-+...-..-++ .++|+|+.++++. ++ |.+++.+
T Consensus 285 ~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~~~~~---~~-~~~~~~l 329 (330)
T TIGR01140 285 AALHEALARRGILIRDFDNFPGLDPRYLRFALPTDE---EN-DRLEEAL 329 (330)
T ss_pred HHHHHHHHHCCEEEEECCCCCCCCCCEEEEEecCHH---HH-HHHHHhh
Confidence 3567888888855544332222 3579998875432 44 8777654
No 170
>cd02575 PseudoU_synth_EcTruD PseudoU_synth_EcTruD: Pseudouridine synthase, TruD family. This group consists of bacterial pseudouridine synthases similar to Escherichia coli TruD. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD makes the highly phylogenetically conserved psi13 in tRNAs.
Probab=37.09 E-value=49 Score=25.21 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=22.8
Q ss_pred CCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 49 ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 49 ~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
-.||-|++++-+.....++++..+++|.+-|
T Consensus 109 L~GNrF~I~lR~v~~~~~~l~~~l~~i~~~G 139 (253)
T cd02575 109 LKGNRFVIRLRGVSGNADKLEQRLETIAQKG 139 (253)
T ss_pred ccCCEEEEEEecCCCCHHHHHHHHHHHHhCC
Confidence 3389999998665445677888888887644
No 171
>PF03147 FDX-ACB: Ferredoxin-fold anticodon binding domain; InterPro: IPR005121 Aminoacyl-tRNA synthetases (aaRSs) play a crucial role in the translation of the genetic code by means of covalent attachment of amino acids to their cognate tRNAs. Phenylalanine-tRNA synthetase (PheRS) is known to be among the most complex enzymes of the aaRS family. Bacterial and mitochondrial PheRSs share a ferredoxin-fold anticodon binding (FDX-ACB) domain, which represents a canonical double split alpha+beta motif having no insertions. The FDX-ACB domain displays a typical RNA recognition fold (RRM) (see PDOC00030 from PROSITEDOC) formed by the four-stranded antiparallel beta sheet, with two helices packed against it [, , , , ].; GO: 0000049 tRNA binding, 0000287 magnesium ion binding, 0004826 phenylalanine-tRNA ligase activity, 0005524 ATP binding, 0006432 phenylalanyl-tRNA aminoacylation, 0008033 tRNA processing; PDB: 1JJC_B 1EIY_B 1PYS_B 3HFZ_B 3TEH_B 3PCO_D 2RHS_D 2RHQ_B 2AKW_B 1B70_B ....
Probab=37.01 E-value=51 Score=20.65 Aligned_cols=60 Identities=15% Similarity=0.186 Sum_probs=37.7
Q ss_pred hhhhhhcchHHHHHHHhhccccceeecCCC---CC-CCcceEeecCC--CCChhhHHHHHHHHHHh
Q psy2616 19 NSSSSLQVAPKIKERMMKSGSMMITYQPIH---AL-PNFFRLVLQNS--ALDHSDMDYFIDEIERL 78 (82)
Q Consensus 19 ~~~kL~kVap~IKerM~~~Gs~MV~YqPl~---~~-~NFFR~V~~np--~~t~~dmD~ll~eIerl 78 (82)
-|..+.++.......++++=.+.--|+... ++ -==||+++.++ ++|.++++.+.+.|...
T Consensus 19 ~~~~i~~~i~~~~~~~l~~v~l~D~y~~~~l~~g~kS~~~rl~~~~~~~TLt~~ev~~~~~~i~~~ 84 (94)
T PF03147_consen 19 PFADIEEVIRSAGGPLLESVELFDVYRGEKLPEGKKSLTYRLTYQSPDRTLTDEEVNEIHDKIIKA 84 (94)
T ss_dssp -HHHHHHHHHHHHTTTEEEEEEEEEEESTTSGTTEEEEEEEEEE--SSS---HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhCccceeEEEEEEEEcCCCCCCCcEEEEEEEEEECCCCCCCHHHHHHHHHHHHHH
Confidence 466677677677766777777777787532 11 12689999765 59999999998887543
No 172
>PRK03321 putative aminotransferase; Provisional
Probab=36.92 E-value=78 Score=23.38 Aligned_cols=50 Identities=8% Similarity=0.069 Sum_probs=34.5
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|=++..-+..+.+++.+.|-....| + .+++|+.+ .+.++++.+++.++++
T Consensus 299 ~i~l~~~~~~~~~~l~~~gI~v~~~---~--~~~iRi~~----~~~~~~~~~~~al~~~ 348 (352)
T PRK03321 299 WLPLGERTADFAAAAAEAGVVVRPF---A--GEGVRVTI----GAPEENDAFLRAARAW 348 (352)
T ss_pred EEeCCCCHHHHHHHHHHCCEEEEcc---C--CCcEEEee----CCHHHHHHHHHHHHHH
Confidence 5555444667888888888443332 2 46799885 3678899999988875
No 173
>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA. Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.
Probab=36.80 E-value=1e+02 Score=23.26 Aligned_cols=50 Identities=12% Similarity=0.193 Sum_probs=31.7
Q ss_pred HHHHHHhhccccceeecCC--------CCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 29 KIKERMMKSGSMMITYQPI--------HALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl--------~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
.+.+++-.+| ..|.--.. .+.+...|+.+. .-.|.+|+|.+++.|+++-+
T Consensus 337 ~l~~~L~~~g-I~v~~g~~~~~~~~~~~g~~~~iRvS~~-~~~t~~ei~~l~~~l~~~~~ 394 (398)
T TIGR03392 337 DLAALLAESG-IALRAGQHCAQPLMAALGVSGTLRASFA-PYNTQQDVDALVDAVGAALE 394 (398)
T ss_pred HHHHHHHhCC-EEEecCccchHHHHHHhCCCCEEEEEee-ccCCHHHHHHHHHHHHHHHH
Confidence 4556666665 55532111 022468997753 34789999999999987643
No 174
>PRK06105 aminotransferase; Provisional
Probab=36.79 E-value=94 Score=24.89 Aligned_cols=44 Identities=14% Similarity=0.249 Sum_probs=30.3
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCC--ChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSAL--DHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~--t~~dmD~ll~eIerl 78 (82)
++..|..++.++| +.+.. . +|-.| .+|.+ |++|+|.+++-+++.
T Consensus 401 ~a~~i~~~~~~~G-vl~~~--~---g~~i~---l~Ppl~it~~eid~~~~~l~~~ 446 (460)
T PRK06105 401 VGARANAAAHEHG-VISRA--M---GDTLA---FCPPLIITAAQVDEMVDRFGRA 446 (460)
T ss_pred HHHHHHHHHHHCC-eEEEe--c---CCEEE---EECCCccCHHHHHHHHHHHHHH
Confidence 3456778888999 55543 2 35333 45764 899999999888764
No 175
>PRK14042 pyruvate carboxylase subunit B; Provisional
Probab=36.57 E-value=19 Score=30.60 Aligned_cols=62 Identities=19% Similarity=0.259 Sum_probs=39.2
Q ss_pred Cchhhhh---hcchHHHHHHHhhccccceeecCCCC-------------CCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 17 NSNSSSS---LQVAPKIKERMMKSGSMMITYQPIHA-------------LPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 17 ~e~~~kL---~kVap~IKerM~~~Gs~MV~YqPl~~-------------~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
++=|++| .+..|.++=.|..+|...+||.+.++ -..+||+. . +-..-..|..-++.+.+.|.
T Consensus 60 edpwerl~~~r~~~pnt~lqmL~Rg~N~vGy~~~~d~vv~~~v~~a~~~Gidv~Rif-d-~lnd~~n~~~~i~~~k~~G~ 137 (596)
T PRK14042 60 EDPWSRLRQLRQALPNTQLSMLLRGQNLLGYRNYADDVVRAFVKLAVNNGVDVFRVF-D-ALNDARNLKVAIDAIKSHKK 137 (596)
T ss_pred CCHHHHHHHHHHhCCCCceEEEeccccccccccCChHHHHHHHHHHHHcCCCEEEEc-c-cCcchHHHHHHHHHHHHcCC
Confidence 3335554 55667777889999999999999872 14789943 2 11123445555666655553
No 176
>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional
Probab=36.16 E-value=1.1e+02 Score=24.69 Aligned_cols=49 Identities=10% Similarity=0.209 Sum_probs=32.0
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
++..+..++.++| +++.. .+..+|=.|+. -.-..|++++|++++-+++.
T Consensus 409 ~~~~~~~~~~~~G-ll~~~--~g~~~~~l~~~-Ppl~it~~eid~~~~~l~~~ 457 (464)
T PRK06938 409 LASLIQRECLRRG-LILEL--GGRHGSVVRFL-PPLIITAEQIDEVAEIFAEA 457 (464)
T ss_pred HHHHHHHHHHHCC-eEEee--cCCCCCEEEEE-CCCccCHHHHHHHHHHHHHH
Confidence 4456778889999 55543 22234545533 12357899999999988764
No 177
>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.
Probab=36.14 E-value=1e+02 Score=25.16 Aligned_cols=46 Identities=17% Similarity=0.222 Sum_probs=32.1
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+-.|.+++.++| +++... ..|..|+. -.-..|++++|.+++-+++.
T Consensus 418 ~~~i~~~~~~~G-vl~~~~----g~~~ir~~-Ppl~it~~eid~~~~~l~~~ 463 (464)
T TIGR00699 418 RDKLLKKARNNG-VNIGGC----GVKAIRLR-PMLVFQKHHADIFLEIISKI 463 (464)
T ss_pred HHHHHHHHHHCC-cEEecC----CCCeEEEe-CCCCCCHHHHHHHHHHHHHh
Confidence 456778888899 555431 13777865 22248899999999988864
No 178
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=36.10 E-value=1e+02 Score=22.28 Aligned_cols=25 Identities=16% Similarity=0.242 Sum_probs=19.6
Q ss_pred CcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 52 NFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 52 NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
+++|+.+ +...|.+|++.+++.+++
T Consensus 313 ~~lRi~~-~~~~~~~~i~~~~~~l~~ 337 (338)
T cd06502 313 GGVRFVT-HWDTTEEDVDELLSALKA 337 (338)
T ss_pred CeEEEEe-ecCCCHHHHHHHHHHHhc
Confidence 7899763 344689999999998875
No 179
>PRK07481 hypothetical protein; Provisional
Probab=35.92 E-value=94 Score=24.74 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=29.4
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
.+-.+..+|.++| +++. |.+ +=.| ..|. .|++|+|.+++-+++.
T Consensus 397 ~~~~~~~~~~~~G-vl~~--~~g---~~i~---l~Ppl~it~~eid~~~~~l~~~ 442 (449)
T PRK07481 397 YANAVADVARENG-VLVR--PSG---TKII---LSPPLVIQREDVDRIVDALDAG 442 (449)
T ss_pred HHHHHHHHHHhCC-eEEE--ecC---CEEE---EECCCCCCHHHHHHHHHHHHHH
Confidence 4456778899999 4443 222 2123 3466 4999999999988765
No 180
>PRK01533 histidinol-phosphate aminotransferase; Validated
Probab=34.91 E-value=87 Score=23.86 Aligned_cols=42 Identities=19% Similarity=0.268 Sum_probs=30.3
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.++|.++| .+|.-. ++++|+.+. +.+++|.+++.++++
T Consensus 311 ~~~~~~~l~~~G-I~Vr~~-----~~~iRis~~----~~~~~~~l~~al~~~ 352 (366)
T PRK01533 311 GGEIYEACAHAG-FIIRPF-----PNGVRITVG----TREQNEGVISVLQQH 352 (366)
T ss_pred HHHHHHHHHHCC-cEEccC-----CCceEEeCC----CHHHHHHHHHHHHHH
Confidence 356778888888 555431 478997653 568899999988765
No 181
>PF04455 Saccharop_dh_N: LOR/SDH bifunctional enzyme conserved region ; InterPro: IPR007545 Lysine-oxoglutarate reductase/Saccharopine dehydrogenase (LOR/SDH) is a bifunctional enzyme. This conserved region is commonly found immediately N-terminal to saccharopine dehydrogenase conserved region (IPR005097 from INTERPRO) in eukaryotes [, ].; PDB: 3C2Q_B 3MGJ_A.
Probab=34.73 E-value=46 Score=22.29 Aligned_cols=31 Identities=29% Similarity=0.463 Sum_probs=24.3
Q ss_pred CCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 49 ALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 49 ~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
.-..+.|+.+. +.+.+.+|.+|++|.++|..
T Consensus 44 ~d~S~a~l~V~--a~d~~~L~~Il~~L~~lga~ 74 (103)
T PF04455_consen 44 DDTSYARLQVS--APDEEHLDEILDELHQLGAV 74 (103)
T ss_dssp TS-EEEEEEEE--ESSHHHHHHHHHHHHHHHHH
T ss_pred CCceeEEEEEe--cCCHHHHHHHHHHHHHHcCC
Confidence 33578998874 44699999999999999863
No 182
>PRK00083 frr ribosome recycling factor; Reviewed
Probab=34.53 E-value=91 Score=22.54 Aligned_cols=49 Identities=12% Similarity=0.250 Sum_probs=37.9
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
....|....+.++ +|++|.. .|+--|+.+ |.+|.+.=..++..+...++
T Consensus 74 ~i~~I~kAI~~s~---lgl~P~~-dg~~Iri~i--P~lT~E~R~elvK~~k~~~E 122 (185)
T PRK00083 74 MLKAIEKAIRASD---LGLNPSN-DGTVIRLPI--PPLTEERRKELVKQVKKEAE 122 (185)
T ss_pred HHHHHHHHHHHCC---CCCCccc-CCCEEEecC--CCCCHHHHHHHHHHHHHHHH
Confidence 4456667777777 5999976 478888776 99999988888888777665
No 183
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=34.52 E-value=1.3e+02 Score=22.78 Aligned_cols=47 Identities=15% Similarity=0.248 Sum_probs=31.6
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.+++.++|-+. .|. ..+.+|+.++ -..|.+++|..++.+++.=
T Consensus 340 ~~~~~~~l~~~GV~~---~p~--~~~~lR~~p~-~~~~~~~i~~~l~~l~~~l 386 (389)
T PRK01278 340 NRDLVQALRDEGLLT---VGA--GDNVVRLLPP-LIITEEEIDEALERLERAA 386 (389)
T ss_pred HHHHHHHHHHCCeEE---eec--CCCEEEEeCC-cccCHHHHHHHHHHHHHHH
Confidence 446677777887332 232 2588997641 2368999999999987753
No 184
>PRK05764 aspartate aminotransferase; Provisional
Probab=34.40 E-value=1.3e+02 Score=22.47 Aligned_cols=45 Identities=22% Similarity=0.473 Sum_probs=29.2
Q ss_pred HHHHHHHhh-ccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMK-SGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~-~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.+.+.+ .| .+|. |.. +.++++|+.+.. +.++++..++-|.++
T Consensus 341 ~~~~~~l~~~~g-i~v~--~g~~f~~~~~vRis~~~---~~~~~~~~i~~l~~~ 388 (393)
T PRK05764 341 LEFAEALLEEAG-VAVV--PGIAFGAPGYVRLSYAT---SLEDLEEGLERIERF 388 (393)
T ss_pred HHHHHHHHHhCC-EEEc--cccccCCCCEEEEEecC---CHHHHHHHHHHHHHH
Confidence 456677765 46 4442 211 226999998764 478888888777654
No 185
>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase. All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.
Probab=34.25 E-value=1e+02 Score=24.37 Aligned_cols=20 Identities=0% Similarity=0.046 Sum_probs=16.7
Q ss_pred cCCC--CChhhHHHHHHHHHHh
Q psy2616 59 QNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 59 ~np~--~t~~dmD~ll~eIerl 78 (82)
.+|. .|.+|+|.+++-+++.
T Consensus 402 ~~ppl~~t~~~id~~~~~l~~~ 423 (427)
T TIGR00508 402 VMPPYIITTEQLQKLTAALIEA 423 (427)
T ss_pred EECCCCCCHHHHHHHHHHHHHH
Confidence 4565 8899999999999875
No 186
>PRK04612 argD acetylornithine transaminase protein; Provisional
Probab=33.99 E-value=97 Score=24.34 Aligned_cols=47 Identities=15% Similarity=0.220 Sum_probs=32.1
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+.+.+.++|-++. |. .+|-+|++. .-..|++|+|.+++-+++.
T Consensus 354 ~a~~i~~~l~~~Gvlv~---~~--g~~~lRl~P-pl~it~eeid~~l~~l~~~ 400 (408)
T PRK04612 354 QAGAILDLAAEHGLLLL---QA--GPDVLRFVP-ALNLTDAELADGLARLRLA 400 (408)
T ss_pred HHHHHHHHHHHCCeEEe---eC--CCCEEEEcC-CccCCHHHHHHHHHHHHHH
Confidence 35567778888884442 21 137788662 2247899999999998765
No 187
>TIGR03251 LAT_fam L-lysine 6-transaminase. Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.
Probab=33.91 E-value=1.1e+02 Score=24.08 Aligned_cols=46 Identities=15% Similarity=0.321 Sum_probs=28.9
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+..++.++| +++ .|.+ .+-.|+. ..-..|++|+|.+++.++++
T Consensus 386 ~~~~~~~l~~~G-vl~--~~~g--~~~lr~~-P~l~~t~~eid~~l~~l~~~ 431 (431)
T TIGR03251 386 RDEVIRQLYREG-VLL--LGCG--ERSIRFR-PPLTVTREEIDAAIDAIRRV 431 (431)
T ss_pred HHHHHHHHHhCC-eEE--ecCC--CCeEEEE-CCccCCHHHHHHHHHHHHhC
Confidence 446777888888 443 2211 2444533 12247899999999998764
No 188
>PLN02376 1-aminocyclopropane-1-carboxylate synthase
Probab=33.71 E-value=1.3e+02 Score=24.41 Aligned_cols=44 Identities=14% Similarity=0.357 Sum_probs=25.3
Q ss_pred HHHHHHhhc-cccceeecCCC----CCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 29 KIKERMMKS-GSMMITYQPIH----ALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 29 ~IKerM~~~-Gs~MV~YqPl~----~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
.+.+++..+ | +.| .|-. ..++|||+.|.++. .++++.-|+.|.+
T Consensus 386 ~l~~~ll~~~g-V~v--~pGs~F~~~~~g~~Ri~fa~~~--~~~l~~al~rl~~ 434 (496)
T PLN02376 386 ELWHIIIDKVK-LNV--SPGSSFRCTEPGWFRICFANMD--DDTLHVALGRIQD 434 (496)
T ss_pred HHHHHHHHcCC-EEE--eCccccCCCCCCEEEEEeeCCC--HHHHHHHHHHHHH
Confidence 344556654 5 333 3321 23689999997633 4666666665554
No 189
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=33.70 E-value=1e+02 Score=24.11 Aligned_cols=49 Identities=6% Similarity=0.161 Sum_probs=29.8
Q ss_pred HHHHHHhhccccceeecCCCC------CCCcceEeecCC----CCChhhHHHHHHHHHHhc
Q psy2616 29 KIKERMMKSGSMMITYQPIHA------LPNFFRLVLQNS----ALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~------~~NFFR~V~~np----~~t~~dmD~ll~eIerlG 79 (82)
.++++|-+.| +.|...|.+. .+.-.|+.+ +. ..|++|+|.+++.|.++=
T Consensus 332 ~~~~~L~~~G-I~v~~~~~p~~~~~p~~~~~lR~~~-~~~t~~~~~~~di~~l~~~l~~~~ 390 (416)
T PRK13034 332 DAEQALERAG-ITVNKNTVPGDTESPFVTSGIRIGT-PAGTTRGFGEAEFREIANWILDVL 390 (416)
T ss_pred HHHHHHHhCC-cEEeccCCCCCCcCCCCCCeeEeCc-HHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3445666666 5555443332 123467553 23 466899999999998763
No 190
>PLN02607 1-aminocyclopropane-1-carboxylate synthase
Probab=33.63 E-value=53 Score=26.12 Aligned_cols=44 Identities=18% Similarity=0.449 Sum_probs=27.0
Q ss_pred HHHHHHhh-ccccceeecCC----CCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 29 KIKERMMK-SGSMMITYQPI----HALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 29 ~IKerM~~-~Gs~MV~YqPl----~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
.+-+++.+ .| +.|. |- ...++|||++|+++ ..++++..++.|.+
T Consensus 385 ~l~~~ll~~~g-V~v~--pG~~f~~~~~g~fRi~fa~~--~~~~l~~gl~Ri~~ 433 (447)
T PLN02607 385 ALWDSILREVK-LNIS--PGSSCHCSEPGWFRVCFANM--SEDTLEVALKRIHR 433 (447)
T ss_pred HHHHHHHHhCC-EEEc--CccccCCCCCCEEEEEeccC--CHHHHHHHHHHHHH
Confidence 34456665 46 3332 32 13478999999773 36777777766654
No 191
>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]
Probab=33.56 E-value=1.4e+02 Score=24.05 Aligned_cols=53 Identities=15% Similarity=0.279 Sum_probs=35.5
Q ss_pred chHHHHHHHhhccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.|..+.+++.++|-+-...-|.- ..-.-+|+. -++..|++|+|.+++-+.+++
T Consensus 334 ~a~~~s~~l~~~Gi~v~~i~~PTVp~gtarlRi~-lta~ht~~~I~~l~~~l~~~~ 388 (388)
T COG0156 334 RALEASRALLEEGIYVSAIRPPTVPKGTARLRIT-LTAAHTEEDIDRLAEALSEVG 388 (388)
T ss_pred HHHHHHHHHHHCCeeEeeecCCCCCCCcceEEEE-ecCCCCHHHHHHHHHHHHhhC
Confidence 46677788888884444444432 112567755 367789999999999888764
No 192
>TIGR03537 DapC succinyldiaminopimelate transaminase. Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.
Probab=33.19 E-value=98 Score=23.03 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=33.3
Q ss_pred hhhhhc--chHHHHHHHhhccccceeecCC-CCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 20 SSSSLQ--VAPKIKERMMKSGSMMITYQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 20 ~~kL~k--Vap~IKerM~~~Gs~MV~YqPl-~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
|-++.. -+..+.+++.++|-..+.-..- ....++||+.++ .+.+++...|+-+.+
T Consensus 292 ~~~~~~~~~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~~~---~~~~~~~~~l~~~~~ 349 (350)
T TIGR03537 292 WVKVPSGIDAKDYALRLLENGIVVAPGENFGSGEEGYVRVALV---PTLEECEEALRLWER 349 (350)
T ss_pred EEECCCCCCHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEEec---CCHHHHHHHHHHHhc
Confidence 555543 2457888888898444422111 123589998874 356777777766554
No 193
>PRK05839 hypothetical protein; Provisional
Probab=33.10 E-value=1.4e+02 Score=22.65 Aligned_cols=55 Identities=9% Similarity=0.153 Sum_probs=31.9
Q ss_pred hhhhhcchHHHHHHHhh-cccccee---ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQVAPKIKERMMK-SGSMMIT---YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~-~Gs~MV~---YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++.. +..+.+++.+ .|-..+. |...+..+++||+.++. +.+++...++.|.++
T Consensus 313 ~~~~~~-~~~~~~~l~~~~gi~v~pg~~f~~~~~~~~~iRis~~~---~~~~~~~~l~~l~~~ 371 (374)
T PRK05839 313 WLPVDN-DEEFTKKLYQNEGIKVLPGSFLGRNGIGKGYVRIALVY---DTPKLEKALEIIKTY 371 (374)
T ss_pred EEeCCC-hHHHHHHHHHHCCEEEeCchhhCCCCCCCCeEEEEecC---CHHHHHHHHHHHHHH
Confidence 555532 4566777765 7743332 21112236899998842 467777777766554
No 194
>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits. This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.
Probab=32.88 E-value=85 Score=23.43 Aligned_cols=44 Identities=5% Similarity=0.160 Sum_probs=27.0
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHH
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDE 74 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~e 74 (82)
..+.++|.++|-+ +.-. .+..++-.|+. .+...|++|+|.+++.
T Consensus 354 ~~~~~~L~~~gi~-~~~~-~~~~~~~lRis-~~~~~t~edid~~~~~ 397 (398)
T cd00613 354 EDLAKALIDGGFH-APTM-YLPVDGTLMIE-PTETETKEELDALLEA 397 (398)
T ss_pred HHHHHhhhhcCcc-cccc-ccCCCCeEEEE-cCCCCCHHHHHHHHHh
Confidence 4566677777732 2111 01234678866 4567899999999875
No 195
>PLN02656 tyrosine transaminase
Probab=32.52 E-value=1.3e+02 Score=23.18 Aligned_cols=42 Identities=19% Similarity=0.327 Sum_probs=25.5
Q ss_pred HHHHHhhccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 30 IKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 30 IKerM~~~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
+.+.+.+.| ..|. |.. +..+|||+.++. +.+.+..-++.|.+
T Consensus 356 ~~~~l~~~g-V~v~--pg~~fg~~~~iRi~~~~---~~e~l~eal~rl~~ 399 (409)
T PLN02656 356 CFKLAREES-VIIL--PGTAVGLKNWLRITFAA---DPSSLEEALGRIKS 399 (409)
T ss_pred HHHHHHhCC-EEEe--cchhcCCCCeEEEEeCC---CHHHHHHHHHHHHH
Confidence 455666677 3333 432 346899999874 35666666665554
No 196
>TIGR00094 tRNA_TruD_broad tRNA pseudouridine synthase, TruD family. MJ11364 is a strong partial match from 50 to 230 aa.
Probab=32.49 E-value=61 Score=25.42 Aligned_cols=31 Identities=16% Similarity=0.277 Sum_probs=21.4
Q ss_pred CCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 49 ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 49 ~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
-.||.|++++-+-....++++..+++|.+-|
T Consensus 126 l~GN~F~I~lR~~~~~~~~~~~~l~~l~~~G 156 (387)
T TIGR00094 126 LKGNRFTIRLREVEPNGDELEERLNELCKKG 156 (387)
T ss_pred CCCCEEEEEEecCCCCHHHHHHHHHHHHhCC
Confidence 4489999998654334566777777776544
No 197
>PRK10534 L-threonine aldolase; Provisional
Probab=32.48 E-value=1e+02 Score=22.51 Aligned_cols=44 Identities=16% Similarity=0.256 Sum_probs=28.8
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+.|.++| ..|.-. ..+|+.. +..+|.+++|.+++-|.+.
T Consensus 287 ~~~~~~~l~~~g-i~v~~~------~~~rl~~-~~r~t~e~~~~~~~~l~~~ 330 (333)
T PRK10534 287 AAALGEYMRERN-VLINAS------PIVRLVT-HLDVSREQLAEVVAHWRAF 330 (333)
T ss_pred HHHHHHHHHHcC-eeecCC------ceEEEEE-EeCCCHHHHHHHHHHHHHH
Confidence 346667777777 444221 2368775 4567899999999887653
No 198
>PRK13360 omega amino acid--pyruvate transaminase; Provisional
Probab=32.00 E-value=1.2e+02 Score=24.21 Aligned_cols=44 Identities=16% Similarity=0.373 Sum_probs=30.4
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHhcc
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerlG~ 80 (82)
-.+..+|.++| +++.. .+|-.|+ +|. .|++++|.+++-+++.-+
T Consensus 394 ~~~~~~l~~~G-vl~~~-----~~~~lr~---~Ppl~~t~~eid~~~~~l~~~l~ 439 (442)
T PRK13360 394 YEVFLKCFEKG-LMIRY-----TGDILAL---SPPLIIEEAQIDELFDILAQALK 439 (442)
T ss_pred HHHHHHHHHCC-cEEEe-----cCCEEEE---eCCCccCHHHHHHHHHHHHHHHH
Confidence 45667888999 66643 1353443 343 789999999999987643
No 199
>PRK09221 beta alanine--pyruvate transaminase; Provisional
Probab=31.96 E-value=1.4e+02 Score=23.82 Aligned_cols=45 Identities=11% Similarity=0.294 Sum_probs=30.5
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+-.+..++.++| +++.. .+|-+|+. ..-..|++++|.+++-+++.
T Consensus 396 ~~~~~~~~~~~G-v~~~~-----~~~~lr~~-Ppl~~t~~eid~~~~~l~~~ 440 (445)
T PRK09221 396 GYEAFMKCFEKG-LLVRY-----TGDTIALS-PPLIIEKAQIDELVDALGDA 440 (445)
T ss_pred HHHHHHHHHHCC-eEEee-----cCCEEEEE-CCccCCHHHHHHHHHHHHHH
Confidence 345778888999 66643 24555543 11237899999999998775
No 200
>cd05566 PTS_IIB_galactitol PTS_IIB_galactitol: subunit IIB of enzyme II (EII) of the galactitol-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is a galactitol-specific permease with two cytoplasmic domains (IIA and IIB) and a transmembrane channel IIC domain that are expressed on three distinct polypeptide chains, in contrast to other PTS sugar transporters. The three genes encoding these subunits (gatA, gatB, and gatC) comprise the gatCBA operon. Galactitol PTS permease takes up exogenous galactitol, releasing the phosphate ester into the cytoplasm in preparation for oxidation and further metabolism via a modified glycolytic pathway called the tagatose-6-phosphate glycolytic pathway. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include galactitol, chitobiose/lichenan, ascorbate, lactose, mannitol, fructose, and
Probab=31.77 E-value=43 Score=20.27 Aligned_cols=23 Identities=17% Similarity=0.055 Sum_probs=19.7
Q ss_pred EeecCCCCChhhHHHHHHHHHHh
Q psy2616 56 LVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 56 ~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+..+|-++..|.+.+.++|++.
T Consensus 66 ~i~v~~~l~~~d~~~i~~~I~~~ 88 (89)
T cd05566 66 VINGLPFLTGIGEDKVYEEILEA 88 (89)
T ss_pred EEEEeeccccCChHHHHHHHHHh
Confidence 45568999999999999999876
No 201
>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated
Probab=31.75 E-value=1.6e+02 Score=23.04 Aligned_cols=48 Identities=19% Similarity=0.247 Sum_probs=29.9
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeec-CCCCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQ-NSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~-np~~t~~dmD~ll~eIerl 78 (82)
.+..+...+.++| +++. |.+..+ .|+-+. +-..|++++|.+++-+++.
T Consensus 365 ~~~~l~~~~~~~G-v~~~--~~~~~~--~~lr~~p~l~~t~~ei~~~~~~l~~~ 413 (425)
T PRK09264 365 LAGKIAAEAFENG-LIIE--TSGPED--EVVKLLPPLTIDEEELEEGLDILEEA 413 (425)
T ss_pred HHHHHHHHHHHCC-CEEe--ccCCCC--CEEEEeCCCCCCHHHHHHHHHHHHHH
Confidence 3556778888899 4443 222112 343333 2348899999999988765
No 202
>PRK08354 putative aminotransferase; Provisional
Probab=31.46 E-value=1.1e+02 Score=22.55 Aligned_cols=47 Identities=17% Similarity=0.405 Sum_probs=27.7
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.+.|=........ +.+++||+.+++| ++.+.+++.+.++
T Consensus 263 ~~~~~~~l~~~gv~v~~g~~f-~~~~~iRi~~~~~----~~~~~l~~al~~~ 309 (311)
T PRK08354 263 AEKFVEFLKRNGILVRDCTSF-GLPGYIRFSVRDR----EENEKLIRALREW 309 (311)
T ss_pred HHHHHHHHHHCCeEEEecccC-CCCCeEEEEeCCH----HHHHHHHHHHHHh
Confidence 346667777777443333322 2358999887644 3566666666543
No 203
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=31.31 E-value=8.5 Score=26.59 Aligned_cols=35 Identities=23% Similarity=0.450 Sum_probs=23.7
Q ss_pred ceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 41 MITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 41 MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
||++ .+--||++|+ +-.+|++|++.+++-.+++.+
T Consensus 21 mvD~----~k~PFy~LvI-~~~Ltkeevee~~~lce~l~e 55 (113)
T PF08963_consen 21 MVDM----EKYPFYALVI-RKGLTKEEVEEFLRLCEELSE 55 (113)
T ss_dssp TS-T----TT-HHHHHHH-HTT--HHHHHHHHHHHHHHHH
T ss_pred HcCc----ccCCHHHHHH-HcCCCHHHHHHHHHHHHHHHH
Confidence 5555 4567999995 456799999999988877654
No 204
>cd02552 PseudoU_synth_TruD_like PseudoU_synth_TruD_like: Pseudouridine synthase, TruD family. This group consists of eukaryotic, bacterial and archeal pseudouridine synthases similar to Escherichia coli TruD and Saccharomyces cerevisiae Pus7. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). E. coli TruD and S. cerevisiae Pus7 make psi13 in cytoplasmic tRNAs. In addition S. cerevisiae Pus7 makes psi35 in U2 small nuclear RNA (U2 snRNA) and psi35 in pre-tRNATyr. Psi35 in U2 snRNA and psi13 in tRNAs are highly phylogenetically conserved. Psi34 is the mammalian U2 snRNA counterpart of yeast U2 snRNA psi35.
Probab=31.05 E-value=64 Score=24.04 Aligned_cols=31 Identities=13% Similarity=0.328 Sum_probs=20.3
Q ss_pred CCCCcceEeecCCCCChhhH-HHHHHHHHHhc
Q psy2616 49 ALPNFFRLVLQNSALDHSDM-DYFIDEIERLG 79 (82)
Q Consensus 49 ~~~NFFR~V~~np~~t~~dm-D~ll~eIerlG 79 (82)
..||.|++++-+......+. +..++.|.+-|
T Consensus 115 l~GN~F~I~lR~~~~~~~~~~~~~l~~l~~~G 146 (232)
T cd02552 115 LKGNRFTITLRGVSPEEDELIERRLESLKEKG 146 (232)
T ss_pred cCCCEEEEEECCCCchHHHHHHHHHHHHHhCC
Confidence 44899999986654333333 46777776654
No 205
>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase
Probab=30.90 E-value=96 Score=25.21 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=30.8
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhccc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~d 81 (82)
+..+...|.++|-++-...+ ...| .+-..|++|+|.+++-+++.-+.
T Consensus 427 ~~~~~~~l~~~Gv~~~~~~~---~~~~-----psl~ht~~dId~~l~al~~~l~~ 473 (474)
T PLN02482 427 FARFHRGMLEEGVYLAPSQF---EAGF-----TSLAHTEEDIDFTIAAAERVLAR 473 (474)
T ss_pred HHHHHHHHHHCCeEEeccCC---CCCc-----CCCCCCHHHHHHHHHHHHHHHHh
Confidence 34677889999944332221 1112 34568999999999999886543
No 206
>PRK08637 hypothetical protein; Provisional
Probab=30.75 E-value=1.4e+02 Score=22.67 Aligned_cols=54 Identities=13% Similarity=0.197 Sum_probs=33.3
Q ss_pred hhhhhcc-hHHHHHHHhh-ccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 20 SSSSLQV-APKIKERMMK-SGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 20 ~~kL~kV-ap~IKerM~~-~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|-++..+ +..+.+++.+ .| +.+-+ . ..+|+|+.++. ++.++++..++.|.+.-+
T Consensus 330 ~~~l~~~~~~~l~~~l~~~~g-v~~~~--~--~~~~iRi~~~~--~~~~~i~~~~~~l~~~~~ 385 (388)
T PRK08637 330 CLKLKGVDAEELRVHLLEKYG-IGTIA--L--NETDLRIAFSC--VEEEDIPELFDSIYKAIK 385 (388)
T ss_pred EecCChHHHHHHHHHHhhhcc-eEEEe--c--cCCceEEEeec--CCHHHHHHHHHHHHHHHH
Confidence 6555422 3456677764 46 44433 1 25799999866 457888888877766543
No 207
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=30.62 E-value=77 Score=20.39 Aligned_cols=26 Identities=12% Similarity=0.340 Sum_probs=19.5
Q ss_pred cceEee-cCCCCChhhHHHHHHHHHHh
Q psy2616 53 FFRLVL-QNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 53 FFR~V~-~np~~t~~dmD~ll~eIerl 78 (82)
-+-.++ .+|.++++.++.+++.++.+
T Consensus 7 ~YE~~~Il~p~l~e~~~~~~~~~~~~~ 33 (97)
T CHL00123 7 KYETMYLLKPDLNEEELLKWIENYKKL 33 (97)
T ss_pred ceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 344444 69999999999999887543
No 208
>PRK08912 hypothetical protein; Provisional
Probab=30.61 E-value=76 Score=23.89 Aligned_cols=46 Identities=11% Similarity=0.315 Sum_probs=27.3
Q ss_pred HHHHHHh-hcccccee---ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 29 KIKERMM-KSGSMMIT---YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 29 ~IKerM~-~~Gs~MV~---YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
.+.+++. +.|-..+. |.+.....+|||+.++.+ .++++..|+.|.+
T Consensus 333 ~~~~~l~~~~gV~v~pg~~f~~~~~~~~~iRl~~~~~---~~~l~~~l~rl~~ 382 (387)
T PRK08912 333 AFCRRLVEEAGVAAIPVSAFYEEDPVTSVVRFCFAKR---DATLDEAVERLAA 382 (387)
T ss_pred HHHHHHHhcCCEEEecchhhCCCCCCCCEEEEEEeCC---HHHHHHHHHHHHH
Confidence 4667765 45733222 111122358999998864 6777777776665
No 209
>TIGR00496 frr ribosome recycling factor. This model finds only eubacterial proteins. Mitochondrial and/or chloroplast forms might be expected but are not currently known. This protein was previously called ribosome releasing factor. By releasing ribosomes from mRNA at the end of protein biosynthesis, it prevents inappropriate translation from 3-prime regions of the mRNA and frees the ribosome for new rounds of translation. EGAD|53116|YHR038W is part of the frr superfamily.
Probab=30.48 E-value=1.2e+02 Score=21.75 Aligned_cols=49 Identities=10% Similarity=0.226 Sum_probs=37.7
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
....|......++ +|++|.. .|+.-|+.+ |.+|.+.=..++..+...++
T Consensus 65 ~~~~I~kAI~~s~---lglnP~~-dg~~Iri~i--P~lT~E~RkelvK~~k~~~E 113 (176)
T TIGR00496 65 NINAIEKAIQRSD---LGLNPNN-DGSVIRVNF--PPLTEERRKELVKHAKKIAE 113 (176)
T ss_pred hHHHHHHHHHHCC---CCCCccc-CCCEEEecC--CCCCHHHHHHHHHHHHHHHH
Confidence 3456777777787 4999974 578888776 99999988888888877665
No 210
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed
Probab=30.27 E-value=66 Score=21.40 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=35.1
Q ss_pred hhcchHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 23 SLQVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 23 L~kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|++||-.+.+|-..=-|+-+|.. +.+++=|+.+.-. +.+.++-++.++++|
T Consensus 22 L~RIaglFsRRgyNIeSLtvg~t---e~~~iSRmtivv~--~~~~i~Qi~kQL~KL 72 (96)
T PRK08178 22 MSHVCGLFARRAFNVEGILCLPI---QDGDKSRIWLLVN--DDQRLEQMISQIEKL 72 (96)
T ss_pred HHHHHHHHhcCCcCeeeEEEeec---CCCCceEEEEEEc--CchHHHHHHHHHhCC
Confidence 55666666666555556666543 4578899887544 467899999999887
No 211
>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional
Probab=30.19 E-value=1.7e+02 Score=22.53 Aligned_cols=43 Identities=12% Similarity=0.197 Sum_probs=24.1
Q ss_pred HHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 31 KERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 31 KerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
.+.+.+.| ..|.--..-+..+|||+.++.+ .++++.-++.|.+
T Consensus 358 ~~ll~~~g-V~v~pg~~f~~~~~iRi~~~~~---~~~l~~al~rl~~ 400 (409)
T PLN00143 358 LKLAKEES-LIILPGVTVGLKNWLRITFAVE---QSSLEDGLGRLKS 400 (409)
T ss_pred HHHHHhCC-EEEeCccccCCCCeEEEEEcCC---HHHHHHHHHHHHH
Confidence 34446677 3333111113468999998643 5666666655554
No 212
>KOG1404|consensus
Probab=30.05 E-value=1e+02 Score=25.87 Aligned_cols=45 Identities=18% Similarity=0.354 Sum_probs=32.1
Q ss_pred cchHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHH
Q psy2616 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEI 75 (82)
Q Consensus 25 kVap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eI 75 (82)
.++-.|-+.+.+.| ++||-= +=.+|=||+- |. .|++|+||+++-.
T Consensus 386 ~~~~~i~~~cke~G-vlvg~g--~i~G~vfria---PPlciT~edi~f~~~~~ 432 (442)
T KOG1404|consen 386 AEGAVIGEQCKELG-VLVGKG--GIHGNVFRIA---PPLCITKEDIDFAVEYF 432 (442)
T ss_pred HHHHHHHHHHHHhC-eeeecc--cccceEEEec---CCeeccHHHHHHHHHHH
Confidence 35567888999999 777542 2236778854 54 8999999988754
No 213
>TIGR03539 DapC_actino succinyldiaminopimelate transaminase. This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).
Probab=29.84 E-value=98 Score=23.15 Aligned_cols=53 Identities=11% Similarity=0.069 Sum_probs=29.1
Q ss_pred hhhhhcchHHHHHHHhhccccceeecCCC-CCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 20 SSSSLQVAPKIKERMMKSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 20 ~~kL~kVap~IKerM~~~Gs~MV~YqPl~-~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
|.++..-+-.+.+++.+.|=....-.+-. ...+|||+.+++ +.++++..++.|
T Consensus 303 ~~~~~~~~~~~~~~l~~~gV~v~pg~~f~~~~~~~iRis~~~---~~~~i~~~~~~l 356 (357)
T TIGR03539 303 WATRGEDAWDTVDRLAELGILVAPGDFYGPAGSQHVRVALTA---TDERIAAAVARL 356 (357)
T ss_pred EEECCCCHHHHHHHHHhCCEEECCccccCCCCCCeEEEEecC---CHHHHHHHHHhh
Confidence 44443233456677777773322211111 225899999866 357777777543
No 214
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.79 E-value=61 Score=25.93 Aligned_cols=24 Identities=8% Similarity=0.279 Sum_probs=20.8
Q ss_pred eecCCCCChhhHHHHHHHHHHhcc
Q psy2616 57 VLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 57 V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|+-++..|+++++.+++.|++.|-
T Consensus 3 iv~~~~~~~~~~~~v~~~~~~~g~ 26 (352)
T PRK13396 3 IVMKVGTPEAEIERISQELTSWGL 26 (352)
T ss_pred EEECCCCCHHHHHHHHHHHHHCCC
Confidence 446888999999999999999873
No 215
>PRK13245 hetR heterocyst differentiation control protein; Reviewed
Probab=29.52 E-value=37 Score=26.67 Aligned_cols=36 Identities=31% Similarity=0.437 Sum_probs=27.4
Q ss_pred hHHHHHhcCCCCchh----hhhh-cchHHHHHHHhhccccc
Q psy2616 6 GLLEQLHSQSKNSNS----SSSL-QVAPKIKERMMKSGSMM 41 (82)
Q Consensus 6 ~~~~~l~~~~~~e~~----~kL~-kVap~IKerM~~~Gs~M 41 (82)
.|.|+|+..+.+++- .-|+ ..|..||+|+.-+||.+
T Consensus 157 eLiefLh~rsQed~p~~rrmpLSeAlaEHIkRRLlysgTVt 197 (299)
T PRK13245 157 ELIEFLHKRSQEDLPPEHRMPLSEALAEHIKRRLLYSGTVT 197 (299)
T ss_pred HHHHHHHHhhhhcCChhccCchHHHHHHHHHHHHhhcccee
Confidence 478999888877752 2232 47889999999999976
No 216
>PRK06836 aspartate aminotransferase; Provisional
Probab=29.47 E-value=1.5e+02 Score=22.54 Aligned_cols=46 Identities=20% Similarity=0.382 Sum_probs=25.7
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+.+.+.+.|-+.+.-..- ..++|||+.++ .+++.++..|+-|.++
T Consensus 343 ~~~~~l~~~gv~v~~g~~f-~~~~~iRi~~~---~~~~~~~~~i~~l~~~ 388 (394)
T PRK06836 343 AFCEKAKKHNLLLVPGSGF-GCPGYFRLSYC---VDTETIERSLPAFEKL 388 (394)
T ss_pred HHHHHHHhCCEEEECchhc-CCCCeEEEEec---CCHHHHHHHHHHHHHH
Confidence 3446666777333322111 23579999875 3566666666555543
No 217
>PLN02450 1-aminocyclopropane-1-carboxylate synthase
Probab=29.30 E-value=71 Score=25.48 Aligned_cols=44 Identities=16% Similarity=0.437 Sum_probs=27.0
Q ss_pred HHHHHhh-ccccceeecCCC----CCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 30 IKERMMK-SGSMMITYQPIH----ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 30 IKerM~~-~Gs~MV~YqPl~----~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+.+++.+ .| +.| .|.. ..++|||+.+++ ++.++++..++.|.++
T Consensus 379 l~~~ll~~~g-V~v--~PG~~f~~~~~g~~Rl~f~~--~~~~~l~~~l~ri~~~ 427 (468)
T PLN02450 379 LWKKIVYEVK-LNI--SPGSSCHCTEPGWFRVCFAN--MSEETLDLAMKRLKSF 427 (468)
T ss_pred HHHHHHHhCC-EEE--eCccccCCCCCCEEEEEecC--CCHHHHHHHHHHHHHH
Confidence 3455554 46 444 2432 236899999876 3367788777777553
No 218
>TIGR02006 IscS cysteine desulfurase IscS. This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.
Probab=28.64 E-value=51 Score=25.15 Aligned_cols=28 Identities=11% Similarity=0.249 Sum_probs=21.4
Q ss_pred CcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 52 NFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 52 NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
.-.|+.+ .+-.|++|+|.+++.|.++.+
T Consensus 349 ~~vR~S~-~~~~t~edid~l~~~l~~~~~ 376 (402)
T TIGR02006 349 SSIRFTI-GRFTTEEEIDYAVKLVKSAID 376 (402)
T ss_pred ceEEEEe-cCCCCHHHHHHHHHHHHHHHH
Confidence 3557665 455899999999999987653
No 219
>cd05568 PTS_IIB_bgl_like PTS_IIB_bgl_like: the PTS (phosphotransferase system) IIB domain of a family of sensory systems composed of a membrane-bound sugar-sensor (similar to BglF) and a transcription antiterminator (similar to BglG) which regulate expression of genes involved in sugar utilization. The domain architecture of the IIB-containing protein includes a region N-terminal to the IIB domain which is homologous to the BglG transcription antiterminator with an RNA-binding domain followed by two homologous domains, PRD1 and PRD2 (PTS Regulation Domains). C-terminal to the IIB domain is a domain similar to the PTS IIA domain. In this system, the BglG-like region and the IIB and IIA-like domains are all expressed together as a single multidomain protein. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include this sensory system with similarity to the bacterial
Probab=28.57 E-value=75 Score=18.56 Aligned_cols=41 Identities=12% Similarity=0.289 Sum_probs=28.6
Q ss_pred hhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 35 MKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 35 ~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
...-.+.++=.|+.. .+ .-+|..||-++.+|++.+.+.|.+
T Consensus 44 ~~~~DlIitT~~l~~-~~-~pvi~i~~~l~~~d~~~i~~~i~~ 84 (85)
T cd05568 44 LDDYDLIISTVPLED-TD-KPVIVVSPILTEEDIKKIRKFIKK 84 (85)
T ss_pred ccCCCEEEEccccCC-CC-CCEEEECCCCCHHHHHHHHHHHhc
Confidence 445667777777652 22 134556999999999999888764
No 220
>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional
Probab=27.82 E-value=1.8e+02 Score=22.61 Aligned_cols=44 Identities=18% Similarity=0.314 Sum_probs=31.4
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
+..|..++.++| +++. |.+ .|-+|+. |. +|++++|.+++-+++.
T Consensus 312 ~~~i~~~~~~~G-ll~~--~~g--~~vlr~~---Ppl~it~~~i~~~~~~l~~~ 357 (364)
T PRK04013 312 VGKYVEELQNRG-YLVH--TAG--QRVIRLL---PPLIISKDTMEEAKSAIEGV 357 (364)
T ss_pred HHHHHHHHHhCC-cEEe--eCC--CCEEEEe---CCcccCHHHHHHHHHHHHHH
Confidence 456788899999 4443 222 3667755 54 7899999999988875
No 221
>PF06877 RraB: Regulator of ribonuclease activity B; InterPro: IPR009671 This entry occurs in several hypothetical bacterial proteins of around 120 residues in length. The function of these proteins is unknown. The protein structure has been determined for one member of this group, the hypothetical protein VCO424 from Vibrio cholerae; it has an alpha+beta sandwich fold.; PDB: 1NXI_A.
Probab=27.77 E-value=1.5e+02 Score=18.53 Aligned_cols=54 Identities=22% Similarity=0.277 Sum_probs=30.7
Q ss_pred hHHHHHHHhhccccceeecCC-C-CCCCcceEeec-CCCCChhhHHHHHHHHHHhccc
Q psy2616 27 APKIKERMMKSGSMMITYQPI-H-ALPNFFRLVLQ-NSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl-~-~~~NFFR~V~~-np~~t~~dmD~ll~eIerlG~d 81 (82)
+..+.+.+.+.| +-|..... . +....|.+.++ .-.++.++|+.+..++..+++.
T Consensus 38 ~~~f~~~~~~~g-~~v~~~~~~~~d~~~~~~~~~~~~~~~~~~~I~~~~~~l~~lA~~ 94 (104)
T PF06877_consen 38 AEKFAEELEKLG-YEVESAEEDEEDGDGPYCLDISREMVLDYEDINAITQELEDLAKE 94 (104)
T ss_dssp HHHHHHHHHHHS----B----B-SS-SSBEEEEEEEEE-S-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CEEEEeecccCCCCceEEEEEEEecCCCHHHHHHHHHHHHHHHHH
Confidence 346668888888 44555332 2 22344555543 5568899999999999988763
No 222
>TIGR03402 FeS_nifS cysteine desulfurase NifS. Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.
Probab=27.73 E-value=87 Score=23.38 Aligned_cols=28 Identities=18% Similarity=0.316 Sum_probs=21.9
Q ss_pred CCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 51 PNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 51 ~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+...|+.+ ..-.|++|+|.+++.|..+-
T Consensus 343 ~~~vR~S~-~~~~t~~di~~~~~~l~~~~ 370 (379)
T TIGR03402 343 HGSIRFSL-SRYNTEEDIDYVLEVLPPII 370 (379)
T ss_pred CceEEEEc-CCCCCHHHHHHHHHHHHHHH
Confidence 35788774 45579999999999998753
No 223
>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type. Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.
Probab=27.73 E-value=56 Score=24.53 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=21.6
Q ss_pred CcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 52 NFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 52 NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
.-+|+.+ ..-.|.+|+|.+++.|+.+-
T Consensus 347 ~~iR~s~-~~~~t~~did~~~~~l~~~~ 373 (382)
T TIGR03403 347 TAIRLSL-SRFTTEEEIDYTIEVFKKAV 373 (382)
T ss_pred eeEEEEC-CCCCCHHHHHHHHHHHHHHH
Confidence 4689774 46789999999999997654
No 224
>PRK12403 putative aminotransferase; Provisional
Probab=27.62 E-value=1.3e+02 Score=24.14 Aligned_cols=43 Identities=19% Similarity=0.329 Sum_probs=28.2
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCC--ChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSAL--DHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~--t~~dmD~ll~eIerl 78 (82)
.-.+..++.++| +++. |.. + + +...|.+ |++|+|.+++-+++.
T Consensus 405 ~~~~~~~~~~~G-ll~~--~~~---~--~-~~l~Ppl~it~~eid~~~~~l~~a 449 (460)
T PRK12403 405 AWRCRTIGFEEG-VIIR--STL---G--R-MIMAPALVAGRAEIDELVDKTRIA 449 (460)
T ss_pred HHHHHHHHHhCC-EEEE--ecC---C--E-EEEECCCCCCHHHHHHHHHHHHHH
Confidence 344667788999 4443 221 2 2 2345876 999999999887653
No 225
>PRK12581 oxaloacetate decarboxylase; Provisional
Probab=27.61 E-value=34 Score=28.36 Aligned_cols=64 Identities=13% Similarity=0.237 Sum_probs=37.9
Q ss_pred CCCchhhhhhc---chHHHHHHHhhccccceeecCCCCC-------------CCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 15 SKNSNSSSSLQ---VAPKIKERMMKSGSMMITYQPIHAL-------------PNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 15 ~~~e~~~kL~k---Vap~IKerM~~~Gs~MV~YqPl~~~-------------~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+++=|++|.. ..|..+=.|..+|.-.|||.+.++. ...||+. . .-..-+.|...++.+.+.
T Consensus 67 l~edpwerlr~~r~~~~nt~lqmLlRG~n~vgy~~ypddvv~~fv~~a~~~Gidi~Rif-d-~lnd~~n~~~ai~~ak~~ 144 (468)
T PRK12581 67 LNEDPWERLRTLKKGLPNTRLQMLLRGQNLLGYRHYADDIVDKFISLSAQNGIDVFRIF-D-ALNDPRNIQQALRAVKKT 144 (468)
T ss_pred cCCCHHHHHHHHHHhCCCCceeeeeccccccCccCCcchHHHHHHHHHHHCCCCEEEEc-c-cCCCHHHHHHHHHHHHHc
Confidence 34444666654 4455566788999999999996422 4789943 2 111234445555555555
Q ss_pred cc
Q psy2616 79 GH 80 (82)
Q Consensus 79 G~ 80 (82)
|.
T Consensus 145 G~ 146 (468)
T PRK12581 145 GK 146 (468)
T ss_pred CC
Confidence 43
No 226
>PF14966 DNA_repr_REX1B: DNA repair REX1-B
Probab=27.45 E-value=54 Score=21.42 Aligned_cols=28 Identities=11% Similarity=0.252 Sum_probs=23.3
Q ss_pred hhhHHHHHhcCCCCchhhhhhcchHHHH
Q psy2616 4 QQGLLEQLHSQSKNSNSSSSLQVAPKIK 31 (82)
Q Consensus 4 ~~~~~~~l~~~~~~e~~~kL~kVap~IK 31 (82)
..|+.+||++.+.+.|-.-.++||-..+
T Consensus 23 ~~gf~~yl~~~~~~~y~~~~~~iT~~f~ 50 (97)
T PF14966_consen 23 EEGFKKYLRSGPEEAYRQLCHEITQEFS 50 (97)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 3689999999999889888888886655
No 227
>PF06254 DUF1019: Protein of unknown function (DUF1019); InterPro: IPR009364 This entry is represented by Bacteriophage phi-80, CII. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.; PDB: 3C4R_C.
Probab=27.37 E-value=45 Score=21.95 Aligned_cols=30 Identities=17% Similarity=0.316 Sum_probs=23.5
Q ss_pred hhhHHHHHhcCCCCchhhhhhcchHHHHHHH
Q psy2616 4 QQGLLEQLHSQSKNSNSSSSLQVAPKIKERM 34 (82)
Q Consensus 4 ~~~~~~~l~~~~~~e~~~kL~kVap~IKerM 34 (82)
.|.+-.+|++ .+++.-++....+|.|.+-|
T Consensus 10 ~Q~iFRwl~~-ds~~~~~~~~~L~PAI~aAl 39 (89)
T PF06254_consen 10 RQKIFRWLDN-DSPAYREKIMQLSPAILAAL 39 (89)
T ss_dssp HHHHHHHHH---SHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhC-CCHHHHHHHHHHHHHHHHhC
Confidence 4778899999 88888899999999998655
No 228
>PLN02760 4-aminobutyrate:pyruvate transaminase
Probab=27.34 E-value=1.7e+02 Score=24.02 Aligned_cols=44 Identities=14% Similarity=0.283 Sum_probs=29.8
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
++-.+..++.++| +++.. . ++ + +..+|. .|++|+|.+++-+++.
T Consensus 443 ~~~~i~~~~~~~G-vl~~~--~---g~--~-lrl~Ppl~it~eeid~~~~~l~~a 488 (504)
T PLN02760 443 VGAYFGAECKKRG-MLVRV--A---GD--N-IMMSPPLIITPEEVDELISIYGKA 488 (504)
T ss_pred HHHHHHHHHHhCC-cEEEe--c---CC--E-EEEECCCCCCHHHHHHHHHHHHHH
Confidence 3556778889999 44432 1 23 2 224576 8899999999888764
No 229
>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=27.17 E-value=1.8e+02 Score=23.05 Aligned_cols=43 Identities=9% Similarity=0.369 Sum_probs=29.4
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
+..|.+++.++| +.+. |. +|=.|+ .|. +|++++|.+++-+++.
T Consensus 378 ~~~i~~~l~e~G-i~v~--~~---g~~l~~---~Ppl~it~~ei~~~~~~l~~~ 422 (429)
T PRK06173 378 MATLQPRFVEHG-IWVR--PF---GKLVYI---MPPFIISPDELSQLTSGLLRV 422 (429)
T ss_pred HHHHHHHHHHCC-eEEE--ec---CCEEEE---eCCccCCHHHHHHHHHHHHHH
Confidence 346778888888 5553 22 354443 365 7899999999988775
No 230
>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic. This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.
Probab=26.82 E-value=2.1e+02 Score=21.74 Aligned_cols=47 Identities=21% Similarity=0.346 Sum_probs=27.0
Q ss_pred HHHHHHHh-hccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMM-KSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~-~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.+++. +.|-..+.-.. -+.++|||+.++.+ .++++..++-|.++
T Consensus 349 ~~~~~~l~~~~gI~v~pg~~-f~~~~~iRis~~~~---~~~l~~~l~rl~~~ 396 (401)
T TIGR01264 349 VEFTERLVAEQSVFCLPGSC-FEYPGFFRVVLTVP---VVMMEEACSRIQEF 396 (401)
T ss_pred HHHHHHHHHhCCEEEeCchh-cCCCCeEEEEEcCC---HHHHHHHHHHHHHH
Confidence 34566765 57743331110 12368999998754 56677666665544
No 231
>PF00356 LacI: Bacterial regulatory proteins, lacI family; InterPro: IPR000843 Numerous bacterial transcription regulatory proteins bind DNA via a helix-turn-helix (HTH) motif. These proteins are very diverse, but for convenience may be grouped into subfamilies on the basis of sequence similarity. One such family groups together a range of proteins, including ascG, ccpA, cytR, ebgR, fruR, galR, galS, lacI, malI, opnR, purF, rafR, rbtR and scrR [, ]. Within this family, the HTH motif is situated towards the N terminus.; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 3KJX_C 1ZAY_A 1VPW_A 2PUA_A 1QQA_A 1PNR_A 1JFT_A 1QP4_A 2PUD_A 1JH9_A ....
Probab=26.71 E-value=67 Score=18.23 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=18.5
Q ss_pred eecC-CCCChhhHHHHHHHHHHhc
Q psy2616 57 VLQN-SALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 57 V~~n-p~~t~~dmD~ll~eIerlG 79 (82)
++++ +.++.+.-+.+++-++++|
T Consensus 19 ~ln~~~~vs~~tr~rI~~~a~~lg 42 (46)
T PF00356_consen 19 VLNGPPRVSEETRERILEAAEELG 42 (46)
T ss_dssp HHTTCSSSTHHHHHHHHHHHHHHT
T ss_pred HHhCCCCCCHHHHHHHHHHHHHHC
Confidence 3454 5689999999999999987
No 232
>PF08497 Radical_SAM_N: Radical SAM N-terminal; InterPro: IPR013704 This domain tends to occur to the N terminus of PF04055 from PFAM radical SAM domain in hypothetical bacterial proteins. Proteins in this entry are radical SAM proteins, they catalyse diverse reactions, including unusual methylations, isomerization, sulphur insertion, ring formation, anaerobic oxidation and protein radical formation. Evidence exists that these proteins generate a radical species by reductive cleavage of S:-adenosylmethionine (SAM) through an unusual Fe-S centre [, ].
Probab=26.44 E-value=59 Score=25.88 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=18.4
Q ss_pred eeecCCCCCCCcceEeecCCC---CChhhHHHHH
Q psy2616 42 ITYQPIHALPNFFRLVLQNSA---LDHSDMDYFI 72 (82)
Q Consensus 42 V~YqPl~~~~NFFR~V~~np~---~t~~dmD~ll 72 (82)
.=.|++++ |.|+.||. +|.++||.+-
T Consensus 248 ~l~Q~~~~-----r~vvqNPP~~pLt~~ElD~vY 276 (302)
T PF08497_consen 248 TLVQKHGD-----RYVVQNPPAPPLTTEELDAVY 276 (302)
T ss_pred eeEEEeCC-----EEEEECCCCCCCCHHHHHHHh
Confidence 34566554 67888873 7899999874
No 233
>PTZ00094 serine hydroxymethyltransferase; Provisional
Probab=26.43 E-value=1.2e+02 Score=23.95 Aligned_cols=50 Identities=16% Similarity=0.229 Sum_probs=29.6
Q ss_pred HHHHHHhhccccceeecCCCC-----CCCcceEeec---CCCCChhhHHHHHHHHHHhc
Q psy2616 29 KIKERMMKSGSMMITYQPIHA-----LPNFFRLVLQ---NSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~-----~~NFFR~V~~---np~~t~~dmD~ll~eIerlG 79 (82)
.+..++-..| ..|++..++. .+.-.|+-+. .-..+++|||.+++.|.++-
T Consensus 349 ~~~~~L~~~g-I~vs~~~~p~~~~~~~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~ 406 (452)
T PTZ00094 349 KMEKLLDAVN-ISVNKNTIPGDKSALNPSGVRLGTPALTTRGAKEKDFKFVADFLDRAV 406 (452)
T ss_pred HHHHHHHHCC-cEEecccCCCCCcCCCCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 3445554446 6666554332 2345775542 11235899999999998763
No 234
>COG5646 Uncharacterized conserved protein [Function unknown]
Probab=26.16 E-value=65 Score=22.66 Aligned_cols=44 Identities=16% Similarity=0.225 Sum_probs=29.3
Q ss_pred HHHHHhcCCCCchhhhhhcchHHHH-------HH-------HhhccccceeecCCCCC
Q psy2616 7 LLEQLHSQSKNSNSSSSLQVAPKIK-------ER-------MMKSGSMMITYQPIHAL 50 (82)
Q Consensus 7 ~~~~l~~~~~~e~~~kL~kVap~IK-------er-------M~~~Gs~MV~YqPl~~~ 50 (82)
.++|+.|+.+++-.+++..+.-.|| ++ ....|+++|+|++-..+
T Consensus 4 fa~y~~~I~~pe~r~r~~elr~~ik~~~Pea~e~Is~~~P~f~~~gn~LihfsvakkH 61 (126)
T COG5646 4 FAEYLKGIEPPELRERTEELRTWIKAKFPEAAEEISYNLPMFTNQGNFLIHFSVAKKH 61 (126)
T ss_pred HHHHHhccCCHHHHHHHHHHHHHHHHHCcchhhhhhhcCcceecCCceEEEeehhhcc
Confidence 4788999988886666665533333 32 35678888888876544
No 235
>PF05542 DUF760: Protein of unknown function (DUF760); InterPro: IPR008479 This entry contains uncharacterised proteins.
Probab=26.08 E-value=1.4e+02 Score=18.86 Aligned_cols=59 Identities=15% Similarity=0.279 Sum_probs=43.5
Q ss_pred hHHHHHhcCCCCchhhhhhcc-hHHHHHHHhhccccceeec-CCCCCCCcceEeecCCCCChhhHHHHH
Q psy2616 6 GLLEQLHSQSKNSNSSSSLQV-APKIKERMMKSGSMMITYQ-PIHALPNFFRLVLQNSALDHSDMDYFI 72 (82)
Q Consensus 6 ~~~~~l~~~~~~e~~~kL~kV-ap~IKerM~~~Gs~MV~Yq-Pl~~~~NFFR~V~~np~~t~~dmD~ll 72 (82)
.|++|++.++. +.-..+.+. .|.+++-|-..=+.++|-- | +.+|..++ .++.+.+-.++
T Consensus 2 ~L~~yi~~l~p-e~~~~l~~~~s~ev~e~m~~~v~~llG~l~p----~~~~~~~i---~~s~~~La~L~ 62 (86)
T PF05542_consen 2 DLLQYIQSLKP-ERIQQLSEPASPEVLEAMKQHVSGLLGNLSP----SDQFNVTI---QTSRENLAQLL 62 (86)
T ss_pred hHHHHHHHCCH-HHHHHhhccCCHHHHHHHHHHHHHHHcCCCC----cccCccee---EECHHHHHHHH
Confidence 58899999998 777777766 7899998888877787765 3 67888664 44556555554
No 236
>PRK09440 avtA valine--pyruvate transaminase; Provisional
Probab=26.01 E-value=2.1e+02 Score=21.79 Aligned_cols=56 Identities=11% Similarity=0.142 Sum_probs=33.8
Q ss_pred hhhhhc---chHHHHHHHhhcccccee---ecCCCC-----CCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQ---VAPKIKERMMKSGSMMIT---YQPIHA-----LPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~k---Vap~IKerM~~~Gs~MV~---YqPl~~-----~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-++.. -+..+.+.+.+.|-.... |.|..+ ..+|||+.++. +.++++..++.|.++
T Consensus 342 w~~~~~~~~~~~~~~~~l~~~gV~v~pg~~F~~~~~~~~~~~~~~iRis~~~---~~~~l~~~i~~l~~~ 408 (416)
T PRK09440 342 WLWFKDLPITTEELYQRLKARGVLVVPGHYFFPGLDEDWPHAHQCIRMNYVQ---DDEEIEKGIAILAEE 408 (416)
T ss_pred EEECCCCCCCHHHHHHHHHHCCEEEechHhhCCCCccccCCcCceEEEEecC---CHHHHHHHHHHHHHH
Confidence 555543 235677778888843332 333211 13699999863 477888887777654
No 237
>PF09684 Tail_P2_I: Phage tail protein (Tail_P2_I); InterPro: IPR006521 These sequences represent a family of phage tail proteins from phage P2 protein and related temperates phage of Gram-negative bacteria.
Probab=25.89 E-value=1.4e+02 Score=19.75 Aligned_cols=29 Identities=24% Similarity=0.463 Sum_probs=21.4
Q ss_pred CCCCcceEeec--CCCCChhhHHHHHHHHHH
Q psy2616 49 ALPNFFRLVLQ--NSALDHSDMDYFIDEIER 77 (82)
Q Consensus 49 ~~~NFFR~V~~--np~~t~~dmD~ll~eIer 77 (82)
+.+.+|++.+. ++.++.++++.++.-|+.
T Consensus 104 g~p~~f~~~v~~~~~~~~~~~~~~i~~~i~~ 134 (139)
T PF09684_consen 104 GRPYWFEVQVYLSDPPIDPEDAERIIRLIEE 134 (139)
T ss_pred CCCceEEEEEEecCCCCCHHHHHHHHHHHHH
Confidence 45789998763 447888888888777665
No 238
>PRK07550 hypothetical protein; Provisional
Probab=25.56 E-value=1.8e+02 Score=21.84 Aligned_cols=48 Identities=17% Similarity=0.524 Sum_probs=32.6
Q ss_pred hHHHHHHHhh-cccccee----ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMK-SGSMMIT----YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~-~Gs~MV~----YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.++|.+ .| +.|- |.+ ...+|+|+.++++ +.++++..++-|.++.
T Consensus 333 ~~~l~~~l~~~~g-v~v~pg~~f~~--~~~~~iRis~~~~--~~~~~~~~~~~l~~~~ 385 (386)
T PRK07550 333 SREVARRLAKEAG-ILCLPGTMFGP--GQEGYLRLAFANA--DVAGIGELVERLRAFA 385 (386)
T ss_pred HHHHHHHHHHhcC-EEEeCchhhCC--CCCCEEEEEeecC--CHHHHHHHHHHHHhhC
Confidence 6678888765 57 4442 211 2258999998553 5889999998887653
No 239
>PRK06062 hypothetical protein; Provisional
Probab=25.49 E-value=1.7e+02 Score=23.42 Aligned_cols=44 Identities=9% Similarity=0.107 Sum_probs=29.8
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCC--CCChhhHHHHHHHHHHh
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNS--ALDHSDMDYFIDEIERL 78 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np--~~t~~dmD~ll~eIerl 78 (82)
.+-.+..+|.+.| +++. |. +| ++. .+| ..|++|+|.+++-+++.
T Consensus 397 ~~~~~~~~l~~~G-vl~~--~~---~~--~lr-l~ppl~~t~~eid~~~~~l~~~ 442 (451)
T PRK06062 397 AMAAVKAACKERG-LLPF--VN---GN--RIH-VVPPCTVTEDEVREGLAILDAA 442 (451)
T ss_pred HHHHHHHHHHHCC-cEEe--ec---CC--EEE-EECCccCCHHHHHHHHHHHHHH
Confidence 3557888999999 4443 21 34 222 235 57999999999988764
No 240
>PF08212 Lipocalin_2: Lipocalin-like domain; InterPro: IPR000566 Proteins which transport small hydrophobic molecules such as steroids, bilins, retinoids, and lipids share limited regions of sequence homology and a common tertiary structure architecture [, , , , ]. This is an eight stranded antiparallel beta-barrel with a repeated + 1 topology enclosing a internal ligand binding site [, ]. The name 'lipocalin' has been proposed [] for this protein family, but cytosolic fatty-acid binding proteins are also included. The sequences of most members of the family, the core or kernal lipocalins, are characterised by three short conserved stretches of residues, while others, the outlier lipocalin group, share only one or two of these [, ]. Proteins known to belong to this family include alpha-1-microglobulin (protein HC); alpha-1-acid glycoprotein (orosomucoid) []; aphrodisin; apolipoprotein D; beta-lactoglobulin; complement component C8 gamma chain []; crustacyanin []; epididymal-retinoic acid binding protein (E-RABP) []; insectacyanin; odorant-binding protein (OBP); human pregnancy-associated endometrial alpha-2 globulin; probasin (PB), a rat prostatic protein; prostaglandin D synthase (5.3.99.2 from EC) []; purpurin; Von Ebner's gland protein (VEGP) []; and lizard epididymal secretory protein IV (LESP IV) [].; GO: 0005488 binding; PDB: 3EBW_B 1QWD_A 2ACO_A 3MBT_A.
Probab=25.43 E-value=99 Score=20.53 Aligned_cols=25 Identities=20% Similarity=0.377 Sum_probs=18.3
Q ss_pred eec-CCCCChhhHHHHHHHHHHhccc
Q psy2616 57 VLQ-NSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 57 V~~-np~~t~~dmD~ll~eIerlG~d 81 (82)
|++ +|.++.+.++.+++.+++.|=|
T Consensus 109 ILsR~p~~~~~~~~~~~~~~~~~G~d 134 (143)
T PF08212_consen 109 ILSRTPQLSEETYAEILDRAKQQGYD 134 (143)
T ss_dssp EEESSSS--HHHHHHHHHHHHHTT--
T ss_pred EEeCCCCCCHHHHHHHHHHHHHcCCC
Confidence 444 8889999999999999999854
No 241
>cd04934 ACT_AK-Hom3_1 CT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. This CD includes the first of two ACT domains located C-terminal to the catalytic domain of the aspartokinase (AK) HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae, and other related ACT domains. AK is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single AK, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies shown that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydro
Probab=25.12 E-value=99 Score=18.73 Aligned_cols=52 Identities=12% Similarity=0.258 Sum_probs=31.2
Q ss_pred chHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 26 VAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 26 Vap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+...|-+.+-+.| .-|+.=|.+. .+ +.+++....++.+.++.++.||+++|+
T Consensus 17 ~~~~If~~la~~~-I~vd~I~~s~-~~-isftv~~~~~~~~~l~~l~~el~~~~~ 68 (73)
T cd04934 17 FLARIFAILDKYR-LSVDLISTSE-VH-VSMALHMENAEDTNLDAAVKDLQKLGT 68 (73)
T ss_pred HHHHHHHHHHHcC-CcEEEEEeCC-CE-EEEEEehhhcChHHHHHHHHHHHHheE
Confidence 4445566677777 5555544432 22 333433334445589999999999875
No 242
>PF06260 DUF1024: Protein of unknown function (DUF1024); InterPro: IPR009368 This entry is represented by Bacteriophage 92, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical proteins from Staphylococcus aureus, which are related to Orf64 from Staphylococcus phage 92 (Bacteriophage 92). The function of this family is unknown.
Probab=25.11 E-value=23 Score=23.28 Aligned_cols=26 Identities=27% Similarity=0.376 Sum_probs=21.5
Q ss_pred eEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 55 RLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 55 R~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|.|+++++-+-.|-.-||.||+.+-+
T Consensus 9 q~visasay~g~dte~llkEiedVYK 34 (82)
T PF06260_consen 9 QSVISASAYNGNDTEGLLKEIEDVYK 34 (82)
T ss_pred HHHHhhhhccCCchHHHHHHHHHHHH
Confidence 45678888899999999999998754
No 243
>PRK13019 clpS ATP-dependent Clp protease adaptor; Reviewed
Probab=24.95 E-value=97 Score=20.26 Aligned_cols=27 Identities=4% Similarity=0.242 Sum_probs=19.2
Q ss_pred CCCCCcceEeecCCCCChhhHHHHHHHHH
Q psy2616 48 HALPNFFRLVLQNSALDHSDMDYFIDEIE 76 (82)
Q Consensus 48 ~~~~NFFR~V~~np~~t~~dmD~ll~eIe 76 (82)
...+.-||+++-|...+ .|||+++.+-
T Consensus 16 ~~~p~~ykViL~NDd~~--t~dfVi~~vl 42 (94)
T PRK13019 16 LERYPLYKVIVLNDDFN--TFEHVVNCLL 42 (94)
T ss_pred ccCCCceEEEEEcCCCC--CHHHHHHHHH
Confidence 34578899998888744 4788886543
No 244
>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional
Probab=24.49 E-value=76 Score=24.14 Aligned_cols=52 Identities=21% Similarity=0.310 Sum_probs=32.9
Q ss_pred hHHHHHHHhhcccc-ceeecCCCCCC----------------CcceEee---cCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSM-MITYQPIHALP----------------NFFRLVL---QNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~-MV~YqPl~~~~----------------NFFR~V~---~np~~t~~dmD~ll~eIerl 78 (82)
...+.+.|..+|=. -+.|.|+...+ .+++-++ +.|.+|.+|||++++.|.+.
T Consensus 302 r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~ 373 (375)
T PRK11706 302 RSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEF 373 (375)
T ss_pred HHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHH
Confidence 45667777777732 14455643211 1233233 57789999999999999874
No 245
>PRK02627 acetylornithine aminotransferase; Provisional
Probab=24.39 E-value=2e+02 Score=21.49 Aligned_cols=47 Identities=21% Similarity=0.388 Sum_probs=31.2
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+.+++.++| ..| .|. ..+.+|+.+ +-..|.+++|.+++-|++.-
T Consensus 346 ~~~~~~~l~~~G-v~v--~~~--~~~~lRi~~-~~~~~~~~i~~~~~~l~~~l 392 (396)
T PRK02627 346 AAEIVKKALEKG-LLI--NVT--GDNVLRLLP-PLIISKEEIDEAVDRLEEVL 392 (396)
T ss_pred HHHHHHHHHHCC-eEE--eec--CCCEEEEEC-CcccCHHHHHHHHHHHHHHH
Confidence 456667777787 333 222 246788653 23578999999999987753
No 246
>TIGR00461 gcvP glycine dehydrogenase (decarboxylating). This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.
Probab=24.27 E-value=1.1e+02 Score=27.65 Aligned_cols=53 Identities=17% Similarity=0.258 Sum_probs=34.4
Q ss_pred hcchHHHHHHHhhccccceeec-CCCCCCCcceEeec-CCCCChhhHHHHHHHHHHhccc
Q psy2616 24 LQVAPKIKERMMKSGSMMITYQ-PIHALPNFFRLVLQ-NSALDHSDMDYFIDEIERLGHD 81 (82)
Q Consensus 24 ~kVap~IKerM~~~Gs~MV~Yq-Pl~~~~NFFR~V~~-np~~t~~dmD~ll~eIerlG~d 81 (82)
..-+..|.+||+..|-.--.-. |.. + .+.+. .-..|++|+|.+++.+..+++.
T Consensus 813 g~~~~dIakrL~d~G~hapt~~~pv~--g---~lmiepTE~eskeelD~f~~al~~I~~e 867 (939)
T TIGR00461 813 GIEAIDVAKRLQDYGFHAPTLSFPVP--G---TLMVEPTESESLEELDRFCDAMIAIKEE 867 (939)
T ss_pred CCCHHHHHHHHHhCCeeccccCCccC--C---eEEEEeeccCCHHHHHHHHHHHHHHHHH
Confidence 3456789999999994322211 322 2 33332 2367899999999998888754
No 247
>PRK12414 putative aminotransferase; Provisional
Probab=24.16 E-value=2.2e+02 Score=21.56 Aligned_cols=44 Identities=7% Similarity=0.035 Sum_probs=23.4
Q ss_pred HHHHHHhhcccccee---ecCCCCCCCcceEeecCCCCChhhHHHHHHHH
Q psy2616 29 KIKERMMKSGSMMIT---YQPIHALPNFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~---YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
.+.+.+.+.|=..+. |.+.+...+|+|+.++++ +++++.-++.|
T Consensus 335 ~~~~~l~~~gV~v~pg~~f~~~~~~~~~iRis~~~~---~~~~~~~~~rl 381 (384)
T PRK12414 335 FVLRLIRDARVATIPLSAFYTDGTDTGLIRLSFSKD---DATLVEGARRL 381 (384)
T ss_pred HHHHHHHhCCEEEecchhhcCCCCCCCEEEEEecCC---HHHHHHHHHHH
Confidence 444555667733332 111111258999998753 56666555444
No 248
>PTZ00433 tyrosine aminotransferase; Provisional
Probab=24.07 E-value=2.5e+02 Score=21.56 Aligned_cols=46 Identities=15% Similarity=0.366 Sum_probs=29.1
Q ss_pred hHHHHHHHhh-ccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMK-SGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~-~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.+ .| ..|. |.. +..+|||+.+..+ .++++..++.|.++
T Consensus 357 ~~~~~~~ll~~~g-V~v~--pg~~f~~~~~iRis~~~~---~e~l~~al~~l~~~ 405 (412)
T PTZ00433 357 DVEFYEKLLEEEN-VQVL--PGEIFHMPGFTRLTISRP---VEVLREAVERIKAF 405 (412)
T ss_pred HHHHHHHHHHhcC-EEEe--CccccCCCCeEEEEecCC---HHHHHHHHHHHHHH
Confidence 4567788875 67 3332 322 2368999998654 66777777666554
No 249
>PRK06107 aspartate aminotransferase; Provisional
Probab=23.98 E-value=1.1e+02 Score=23.29 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=19.6
Q ss_pred CCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 50 LPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 50 ~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+|||+.+++ +.++++..++-|.++
T Consensus 372 ~~~~iRis~~~---~~e~l~~~l~~l~~~ 397 (402)
T PRK06107 372 LSPYFRLSIAT---SLETLEEACARIERA 397 (402)
T ss_pred CCCeEEEEeCC---CHHHHHHHHHHHHHH
Confidence 36799999885 378888888777654
No 250
>TIGR02302 aProt_lowcomp conserved hypothetical protein TIGR02302. Members of this family are long (~850 residue) bacterial proteins from the alpha Proteobacteria. Each has 2-3 predicted transmembrane helices near the N-terminus and a long C-terminal region that includes stretches of Gln/Gly-rich low complexity sequence, predicted by TMHMM to be outside the membrane. In Bradyrhizobium japonicum, two tandem reading frames are together homologous the single members found in other species; the cutoffs scores are set low enough that the longer scores above the trusted cutoff and the shorter above the noise cutoff for this model.
Probab=23.61 E-value=90 Score=27.95 Aligned_cols=20 Identities=30% Similarity=0.597 Sum_probs=17.6
Q ss_pred CCCChhhHHHHHHHHHHhcc
Q psy2616 61 SALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 61 p~~t~~dmD~ll~eIerlG~ 80 (82)
..++..|++.++|.|++|.+
T Consensus 563 ~~l~~~dLq~Mmd~ieela~ 582 (851)
T TIGR02302 563 KVLRQQDLQNMMDQIENLAR 582 (851)
T ss_pred cccCHHHHHHHHHHHHHHHH
Confidence 46799999999999999865
No 251
>PF02881 SRP54_N: SRP54-type protein, helical bundle domain; InterPro: IPR013822 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the N-terminal helical bundle domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 1J8M_F 1J8Y_F 2J37_W 2OG2_A 3B9Q_A 2V3C_C 3NDB_B 1ZU5_B 1ZU4_A 1WGW_A ....
Probab=23.54 E-value=89 Score=18.35 Aligned_cols=17 Identities=29% Similarity=0.610 Sum_probs=14.2
Q ss_pred CCChhhHHHHHHHHHHh
Q psy2616 62 ALDHSDMDYFIDEIERL 78 (82)
Q Consensus 62 ~~t~~dmD~ll~eIerl 78 (82)
..+++++|.+++||+..
T Consensus 17 ~~~~~~i~~~l~ele~~ 33 (75)
T PF02881_consen 17 FLTEKDIEEFLEELEEA 33 (75)
T ss_dssp SCTHHHHHHHHHHHHHH
T ss_pred cccHHhHHHHHHHHHHH
Confidence 35799999999999864
No 252
>PF04651 Pox_A12: Poxvirus A12 protein; InterPro: IPR006744 This family contains vaccinia virus protein A12 and its homologues. VVA12 is a virion protein though its function is unknown.
Probab=23.34 E-value=38 Score=25.33 Aligned_cols=25 Identities=8% Similarity=0.209 Sum_probs=20.7
Q ss_pred CCCCchhhhhhcchHHHHHHHhhcc
Q psy2616 14 QSKNSNSSSSLQVAPKIKERMMKSG 38 (82)
Q Consensus 14 ~~~~e~~~kL~kVap~IKerM~~~G 38 (82)
-+-+||-+-++|+||++|.-+-.-+
T Consensus 9 SSYDDYIeTinKitPQLrtlLahI~ 33 (189)
T PF04651_consen 9 SSYDDYIETINKITPQLRTLLAHIS 33 (189)
T ss_pred ccHHHHHHHHHHhCHHHHHHHHHhc
Confidence 4567899999999999998886544
No 253
>PRK03715 argD acetylornithine transaminase protein; Provisional
Probab=23.22 E-value=2.2e+02 Score=22.20 Aligned_cols=28 Identities=14% Similarity=0.325 Sum_probs=20.2
Q ss_pred CcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 52 NFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 52 NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
|=+|+. .+...|++++|.+++-+++.-+
T Consensus 365 ~~lR~~-p~l~~t~~ei~~~~~~l~~~l~ 392 (395)
T PRK03715 365 NLLRFM-PALNVTTEEIDQMIAMLRSVLD 392 (395)
T ss_pred CEEEEe-CCcccCHHHHHHHHHHHHHHHH
Confidence 445544 3345899999999999987644
No 254
>PRK07568 aspartate aminotransferase; Provisional
Probab=23.17 E-value=1.4e+02 Score=22.36 Aligned_cols=25 Identities=12% Similarity=0.212 Sum_probs=18.7
Q ss_pred CCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 51 PNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 51 ~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
.+|||+.++. +.++++..++.|.+.
T Consensus 365 ~~~iRls~~~---~~~~~~~~~~~l~~~ 389 (397)
T PRK07568 365 KNEIRIAYVL---NEEDLKRAMEILKEA 389 (397)
T ss_pred CCeEEEEEeC---CHHHHHHHHHHHHHH
Confidence 4799999863 468888888777653
No 255
>PF15296 Codanin-1_C: Codanin-1 C-terminus
Probab=23.10 E-value=30 Score=23.76 Aligned_cols=21 Identities=14% Similarity=0.417 Sum_probs=17.7
Q ss_pred CcceEeecCCCCChhhHHHHHHHH
Q psy2616 52 NFFRLVLQNSALDHSDMDYFIDEI 75 (82)
Q Consensus 52 NFFR~V~~np~~t~~dmD~ll~eI 75 (82)
+||+ +.|+-++..+||+.+-+
T Consensus 74 aFfh---~Qp~SlRRtVeFV~ERv 94 (121)
T PF15296_consen 74 AFFH---SQPASLRRTVEFVSERV 94 (121)
T ss_pred HHHh---cCCHHHHHHHHHHHHHH
Confidence 6999 77888899999998654
No 256
>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated
Probab=23.09 E-value=91 Score=23.72 Aligned_cols=28 Identities=18% Similarity=0.343 Sum_probs=20.8
Q ss_pred CcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 52 NFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 52 NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
..-|+.+ ..-.|++|+|.+++.|+++..
T Consensus 376 ~~iRiS~-~~ynt~~did~l~~~l~~i~~ 403 (406)
T PRK09295 376 AMCRASL-AMYNTHEEVDRLVAGLQRIHR 403 (406)
T ss_pred CEEEEEc-cCCCCHHHHHHHHHHHHHHHH
Confidence 3566542 345789999999999998754
No 257
>PRK00984 truD tRNA pseudouridine synthase D; Reviewed
Probab=22.96 E-value=1.6e+02 Score=23.07 Aligned_cols=31 Identities=23% Similarity=0.304 Sum_probs=20.5
Q ss_pred CCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 49 ALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 49 ~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
..||-|++++-+-....+.++..+++|.+-|
T Consensus 126 l~GN~F~I~lR~~~~~~~~~~~~l~~l~~~G 156 (341)
T PRK00984 126 LKGNRFTIRLREVSKDRDKVEQRLEEIAAGG 156 (341)
T ss_pred CCCCEEEEEEecCCCCHHHHHHHHHHHHhCC
Confidence 3489999998654334566667777765433
No 258
>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]
Probab=22.88 E-value=2.7e+02 Score=22.31 Aligned_cols=57 Identities=12% Similarity=0.149 Sum_probs=34.1
Q ss_pred hhhhhc--chHHHHHHHhhcccccee----ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 20 SSSSLQ--VAPKIKERMMKSGSMMIT----YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 20 ~~kL~k--Vap~IKerM~~~Gs~MV~----YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
|-+|.. -+-.+.++..++|-.... |.+.+...||||+.++++. .++++.-+..+-++
T Consensus 390 wl~l~~~~~~~~l~~~a~~~gv~i~~~g~~f~~~~~~~~~~Rl~~s~~~--~e~i~~gi~~l~~~ 452 (459)
T COG1167 390 WLELPEGIDARELLAAALEKGVVVTPLGSAFSADGDPRNGLRLSFSSPS--EEEIEEGIKRLAAL 452 (459)
T ss_pred EEEcCCCCCHHHHHHHHHHCCCEEEcCCccccCCCCCCCeEEEEcCCCC--HHHHHHHHHHHHHH
Confidence 545543 244667777777744333 2222235689999886665 67777766665543
No 259
>PRK07445 O-succinylbenzoic acid--CoA ligase; Reviewed
Probab=22.85 E-value=1.7e+02 Score=22.62 Aligned_cols=67 Identities=16% Similarity=0.182 Sum_probs=38.3
Q ss_pred HHHHhcCCCCch-----hhhhhcchHHHHHHHhhcccc----ceeecCCCCCCCcce-----------EeecCCCCChhh
Q psy2616 8 LEQLHSQSKNSN-----SSSSLQVAPKIKERMMKSGSM----MITYQPIHALPNFFR-----------LVLQNSALDHSD 67 (82)
Q Consensus 8 ~~~l~~~~~~e~-----~~kL~kVap~IKerM~~~Gs~----MV~YqPl~~~~NFFR-----------~V~~np~~t~~d 67 (82)
+|.|+..+|.+| .++|...+..+...+...|.. -|... .++.++|+= +|..||..+.+.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~el~~~~~~~a~~L~~~g~~~~~~~V~i~-~~n~~e~~~~~~A~~~~G~~~vpl~~~~~~~~ 83 (452)
T PRK07445 5 LELLKQLSNQDWLIGYNSQRFYQLAQQLYLQLQQLATPRTPPKILLA-ESDPLQFLAAFLAAVAAGCPVFLANPHWGQQE 83 (452)
T ss_pred HHHHHHhccCceeeecChHHHHHHHHHHHHHHHHhcCCCCCCeEEEe-cCCCHHHHHHHHHHHHhCcEEEeeccCCCHHH
Confidence 466666777776 345555555555555554321 12222 123344442 344689999999
Q ss_pred HHHHHHHH
Q psy2616 68 MDYFIDEI 75 (82)
Q Consensus 68 mD~ll~eI 75 (82)
+.++++..
T Consensus 84 ~~~~~~~~ 91 (452)
T PRK07445 84 WQQVLNLV 91 (452)
T ss_pred HHHHHHhc
Confidence 99988764
No 260
>PRK07777 aminotransferase; Validated
Probab=22.46 E-value=1.4e+02 Score=22.40 Aligned_cols=48 Identities=13% Similarity=0.237 Sum_probs=29.8
Q ss_pred hHHHHHHHhh-cccccee----ecC-CCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMK-SGSMMIT----YQP-IHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~-~Gs~MV~----YqP-l~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.+ .| ..|. |-+ .....+|||+.++. +.++++..|+-|.++
T Consensus 330 ~~~~~~~l~~~~g-v~v~pg~~f~~~~~~~~~~~Ri~~~~---~~~~l~~~l~~l~~~ 383 (387)
T PRK07777 330 GTEFCRALPERVG-VAAIPMSVFYDPADAWNHLVRFAFCK---RDDTLDEAIRRLRAL 383 (387)
T ss_pred HHHHHHHHHHhCC-EEEeCchHhCCCCcCCCCeEEEEecC---CHHHHHHHHHHHHHH
Confidence 4677788864 56 4442 211 12335899999864 377777777766654
No 261
>TIGR01634 tail_P2_I phage tail protein, P2 protein I family. This model represents the family of phage P2 protein I and related tail proteins from a number of temperate phage of Gram-negative bacteria. This alignment is built as a fragment model and identifies some phage tail proteins with strong but local similarity to members of the seed alignment.
Probab=22.33 E-value=1.5e+02 Score=20.71 Aligned_cols=33 Identities=21% Similarity=0.124 Sum_probs=22.2
Q ss_pred ecCCCCCCCcceEee--cCCCCChhhHHHHHHHHHH
Q psy2616 44 YQPIHALPNFFRLVL--QNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 44 YqPl~~~~NFFR~V~--~np~~t~~dmD~ll~eIer 77 (82)
|+|. +.|-.||+.+ ++...++++..++.+-|..
T Consensus 100 ~~p~-g~P~tF~i~~~~~~~g~~~~~~~~~~~~i~~ 134 (139)
T TIGR01634 100 TGPP-GPPGTFELTLTVSGSGGTEETYLEVERLIAD 134 (139)
T ss_pred cCCC-CCCeEEEEEEEccCCCCCHHHHHHHHHHHHh
Confidence 3443 3578999885 4666788877777666554
No 262
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=22.24 E-value=2.5e+02 Score=21.95 Aligned_cols=44 Identities=14% Similarity=0.331 Sum_probs=24.2
Q ss_pred HHHHHHhhccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 29 KIKERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
..-+++.++....|- |-. +.+||||+.++. ..++++..++.|.+
T Consensus 375 ~~~~~ll~~~gV~v~--pG~~fg~~~~lRis~~~---~~~~l~~al~rl~~ 420 (430)
T PLN00145 375 DFCCKLAKEESVVVL--PGSALGMKNWLRITFAI---DPPSLEDGLERLKS 420 (430)
T ss_pred HHHHHHHHhCCEEEe--CccccCCCCeEEEEeCC---CHHHHHHHHHHHHH
Confidence 344555554334442 321 346999999863 35555555555544
No 263
>PRK12330 oxaloacetate decarboxylase; Provisional
Probab=22.10 E-value=44 Score=27.90 Aligned_cols=62 Identities=13% Similarity=0.285 Sum_probs=40.7
Q ss_pred CCchhhhhhcc---hHHHHHHHhhccccceeecCCCC-------------CCCcceEeec-CCCCChhhHHHHHHHHHHh
Q psy2616 16 KNSNSSSSLQV---APKIKERMMKSGSMMITYQPIHA-------------LPNFFRLVLQ-NSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 16 ~~e~~~kL~kV---ap~IKerM~~~Gs~MV~YqPl~~-------------~~NFFR~V~~-np~~t~~dmD~ll~eIerl 78 (82)
+++-|++|..+ .|..+=.|..+|...+||.+.++ -...||+... |. -..+...++.+.+.
T Consensus 60 ~Edpwerlr~lr~~~~nt~lqmL~Rg~N~vGy~~y~ddvv~~fv~~a~~~Gidi~RIfd~lnd---v~nl~~ai~~vk~a 136 (499)
T PRK12330 60 NEDPWERLRTFRKLMPNSRLQMLLRGQNLLGYRHYEDEVVDRFVEKSAENGMDVFRVFDALND---PRNLEHAMKAVKKV 136 (499)
T ss_pred CCCHHHHHHHHHHhCCCCeEEEEEcccccCCccCcchhHHHHHHHHHHHcCCCEEEEEecCCh---HHHHHHHHHHHHHh
Confidence 34446666544 45555678899999999999872 2468885432 32 26677777777776
Q ss_pred cc
Q psy2616 79 GH 80 (82)
Q Consensus 79 G~ 80 (82)
|.
T Consensus 137 g~ 138 (499)
T PRK12330 137 GK 138 (499)
T ss_pred CC
Confidence 64
No 264
>PRK05287 hypothetical protein; Provisional
Probab=22.01 E-value=63 Score=24.73 Aligned_cols=22 Identities=18% Similarity=0.459 Sum_probs=19.4
Q ss_pred cCCCCChhhHHHHHHHHHHhcc
Q psy2616 59 QNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 59 ~np~~t~~dmD~ll~eIerlG~ 80 (82)
.||.++.+.++.++++|+++..
T Consensus 79 ~~p~vd~~~l~~~l~~l~~~~~ 100 (250)
T PRK05287 79 GNPGVDQEALEALLQELEQASA 100 (250)
T ss_pred cCCCcCHHHHHHHHHHHHHHHH
Confidence 6899999999999999998754
No 265
>PLN02672 methionine S-methyltransferase
Probab=21.86 E-value=2.3e+02 Score=26.17 Aligned_cols=48 Identities=23% Similarity=0.474 Sum_probs=31.2
Q ss_pred HHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
-.+.+++.++....|.--..-+.++|||+.++. +.++++..++-|.+.
T Consensus 1030 ~efae~LLee~GVaV~PGs~FG~~g~~RIsfa~---~~e~LeeALerL~kf 1077 (1082)
T PLN02672 1030 SNIREAILKSTGLCINSSSWTGIPGYCRFSFAL---EDSEFDRALKAIARF 1077 (1082)
T ss_pred HHHHHHHHHcCCEEEecCcccCCCCeEEEEecC---CHHHHHHHHHHHHHH
Confidence 346677877633544421111347899999863 577899888888764
No 266
>PF10346 Con-6: Conidiation protein 6; InterPro: IPR018824 This entry represents a conserved region found in fungal conidiation-specific protein 6 []. This protein is expressed approximately 6 hours after the induction of development and is induced just prior to major constriction-chain growth [].
Probab=21.67 E-value=1.2e+02 Score=16.90 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=15.3
Q ss_pred eecCCCCChhhHHHHHHHHHHhc
Q psy2616 57 VLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 57 V~~np~~t~~dmD~ll~eIerlG 79 (82)
.+.||.+|++-=+..=+.++.+|
T Consensus 13 al~NPnvSeeaK~~A~~~Le~~g 35 (36)
T PF10346_consen 13 ALHNPNVSEEAKQHAREKLEEMG 35 (36)
T ss_pred HhcCCCcCHHHHHHHHHHHHHcc
Confidence 45799999776665555555554
No 267
>PRK05367 glycine dehydrogenase; Provisional
Probab=21.56 E-value=1.8e+02 Score=26.24 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=33.0
Q ss_pred hHHHHHHHhhcccccee-ecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhcc
Q psy2616 27 APKIKERMMKSGSMMIT-YQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~-YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG~ 80 (82)
+..|.+|++..|-.-.. +.|. .+-+++-+ .-..|++|+|.+++.+..++.
T Consensus 824 ~~di~krL~d~G~~~~t~~~pv---~~~l~i~p-tE~~s~~elDr~~~al~~i~~ 874 (954)
T PRK05367 824 VDDIAKRLIDYGFHAPTMSFPV---AGTLMVEP-TESESKAELDRFCDAMIAIRA 874 (954)
T ss_pred HHHHHHHHHHCCCeEeecCCcc---CCEEEEEe-eecCCHHHHHHHHHHHHHHHH
Confidence 46788999998833222 2232 45566543 235789999999998887764
No 268
>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional
Probab=21.56 E-value=2.3e+02 Score=22.73 Aligned_cols=46 Identities=13% Similarity=0.239 Sum_probs=25.0
Q ss_pred HHHHHHhhccccceeecCCC-CCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 29 KIKERMMKSGSMMITYQPIH-ALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~-~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
.+...+.+.|=..+.-..-+ +..+|||+.++ .+.+++..-++.|.+
T Consensus 464 ~~~~ll~~~gV~v~pg~~F~~~~~~~~Ris~~---~~~~~l~~a~~rl~~ 510 (517)
T PRK13355 464 FALDLLHDKKVLIVQGTGFNWDKPDHFRVVYL---PRLEDLEDAMDRLAD 510 (517)
T ss_pred HHHHHHHhCCEEEeCcchhCCCCcCEEEEEeC---CCHHHHHHHHHHHHH
Confidence 44566777773333211111 24689999984 345556555555543
No 269
>TIGR01235 pyruv_carbox pyruvate carboxylase. This enzyme plays a role in gluconeogensis but not glycolysis.
Probab=21.39 E-value=65 Score=29.48 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=25.5
Q ss_pred chhhhh---hcchHHHHHHHhhccccceeecCCCC
Q psy2616 18 SNSSSS---LQVAPKIKERMMKSGSMMITYQPIHA 49 (82)
Q Consensus 18 e~~~kL---~kVap~IKerM~~~Gs~MV~YqPl~~ 49 (82)
+=|++| .+..|.+.=+|..+|+..|||.|.++
T Consensus 590 dPwerl~~~r~~~pn~~~qml~Rg~n~vgy~~ypd 624 (1143)
T TIGR01235 590 DPWERLEDLRKGVPNILFQMLLRGANGVGYTNYPD 624 (1143)
T ss_pred CHHHHHHHHHHhCCCCceeeeeccccccCccCCCH
Confidence 335554 56678888999999999999999873
No 270
>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=21.35 E-value=2.1e+02 Score=22.62 Aligned_cols=41 Identities=10% Similarity=0.205 Sum_probs=25.6
Q ss_pred HHHHHHhhccccceeecCCCCCCCcceEeecCCC--CChhhHHHHHHHHHHh
Q psy2616 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSA--LDHSDMDYFIDEIERL 78 (82)
Q Consensus 29 ~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~--~t~~dmD~ll~eIerl 78 (82)
.+.+.+.++| +.+. |. +| ++...|. .|++++|++++-+++.
T Consensus 375 ~~~~~~~~~G-l~~~--~~---g~---~l~~~PpL~it~~~i~~~~~~l~~a 417 (422)
T PRK05630 375 EATQAAVDHG-VWLR--PF---GR---LVYVMPPYITTSEQIAQICAALAAA 417 (422)
T ss_pred HHHHHHHHCC-eEEE--ec---CC---EEEEECCccCCHHHHHHHHHHHHHH
Confidence 4556666666 3332 11 34 3334464 7899999999988764
No 271
>PRK08297 L-lysine aminotransferase; Provisional
Probab=21.33 E-value=2.1e+02 Score=22.77 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=30.0
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHhc
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerlG 79 (82)
+..+..++.++|- ++. |.+ .+..|+. ..-..|++++|.+++-+++.-
T Consensus 393 ~~~~~~~l~~~Gv-l~~--~~~--~~~lr~~-P~l~~t~~eid~~l~~l~~~l 439 (443)
T PRK08297 393 RDEVIRRLWEEGV-LVL--PCG--ERSIRFR-PALTVTTEEIDAAIDALRRAL 439 (443)
T ss_pred HHHHHHHHHHCCE-EEe--cCC--CCeEEEE-CCccCCHHHHHHHHHHHHHHH
Confidence 4467778888884 332 322 2445543 123478999999999988753
No 272
>PRK01261 aroD 3-dehydroquinate dehydratase; Provisional
Probab=21.21 E-value=1.2e+02 Score=22.55 Aligned_cols=29 Identities=14% Similarity=0.201 Sum_probs=23.0
Q ss_pred ceEeecCCCCChhhHHHHHHHHHHhcccC
Q psy2616 54 FRLVLQNSALDHSDMDYFIDEIERLGHDL 82 (82)
Q Consensus 54 FR~V~~np~~t~~dmD~ll~eIerlG~dl 82 (82)
-++|+++=..+.+++..+++++.++|.|+
T Consensus 120 ~kvIvS~Htp~~eeL~~~l~~m~~~gaDI 148 (229)
T PRK01261 120 TMLMVSYHTNNSDNMPAILDIMNEKNPDY 148 (229)
T ss_pred CeEEEEeCCCCHHHHHHHHHHHHHhCCCE
Confidence 45677655567899999999999999774
No 273
>COG4582 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.16 E-value=86 Score=24.20 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=21.9
Q ss_pred ecCCCCChhhHHHHHHHHHHhcccC
Q psy2616 58 LQNSALDHSDMDYFIDEIERLGHDL 82 (82)
Q Consensus 58 ~~np~~t~~dmD~ll~eIerlG~dl 82 (82)
..+|.+..+-+|.++.|.+..|.+|
T Consensus 75 ~~vpgvDqe~ldal~~el~~a~~~L 99 (244)
T COG4582 75 IGVPGVDQERLDALIQQLKAAGSVL 99 (244)
T ss_pred hcCCCcCHHHHHHHHHHHHHhhhhh
Confidence 3689999999999999999988764
No 274
>PRK07309 aromatic amino acid aminotransferase; Validated
Probab=20.96 E-value=3.2e+02 Score=20.74 Aligned_cols=47 Identities=9% Similarity=0.092 Sum_probs=26.7
Q ss_pred HHHHHHHh-hcccccee-ecCC-CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMM-KSGSMMIT-YQPI-HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~-~~Gs~MV~-YqPl-~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.+++. +.| +.|. ...- ...++|||+.++. +.++++..|+.|.+.
T Consensus 336 ~~~~~~l~~~~g-v~v~pg~~f~~~~~~~iRi~~~~---~~~~l~~~i~~l~~~ 385 (391)
T PRK07309 336 FKFLQDFARKKA-VAFIPGAAFGPYGEGYVRLSYAA---SMETIKEAMKRLKEY 385 (391)
T ss_pred HHHHHHHHHhCC-EEEeCchhhCCCCCCEEEEEecC---CHHHHHHHHHHHHHH
Confidence 34555655 456 4442 1111 1225899998764 356777777766543
No 275
>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.
Probab=20.79 E-value=2.2e+02 Score=21.39 Aligned_cols=52 Identities=15% Similarity=0.270 Sum_probs=33.1
Q ss_pred HHHHHHHhhcccccee--ecCCC----CCCCcceEeec---CCCCChhhHHHHHHHHHHhcc
Q psy2616 28 PKIKERMMKSGSMMIT--YQPIH----ALPNFFRLVLQ---NSALDHSDMDYFIDEIERLGH 80 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~--YqPl~----~~~NFFR~V~~---np~~t~~dmD~ll~eIerlG~ 80 (82)
..+.+.+.+.| ..|. +.|.. ..++-+|+.++ .+..+.+||+.+++.|.++.+
T Consensus 324 ~~~~~~l~~~g-I~v~~~~~p~~~~~~~~~~~lRi~~~~~~~~~~~~~di~~~~~~l~~~~~ 384 (402)
T cd00378 324 KAAEDALEEAG-ITVNKNTLPWDPSSPFVPSGIRIGTPAMTTRGMGEEEMEEIADFIARALK 384 (402)
T ss_pred HHHHHHHHHcC-cEEcCCcCCCCCCCCCCCCeeEecCHHHHHhCCCHHHHHHHHHHHHHHHh
Confidence 34556666667 4443 22332 13468997653 245789999999999988643
No 276
>PLN02187 rooty/superroot1
Probab=20.70 E-value=2.8e+02 Score=22.03 Aligned_cols=41 Identities=10% Similarity=0.244 Sum_probs=23.4
Q ss_pred HHHHhhccccceeecCCC--CCCCcceEeecCCCCChhhHHHHHHHHHH
Q psy2616 31 KERMMKSGSMMITYQPIH--ALPNFFRLVLQNSALDHSDMDYFIDEIER 77 (82)
Q Consensus 31 KerM~~~Gs~MV~YqPl~--~~~NFFR~V~~np~~t~~dmD~ll~eIer 77 (82)
...+.+.| ..|. |-. +..+|||+.+..+ .+.++..++-|.+
T Consensus 392 ~~ll~~~g-V~v~--pG~~fg~~~~iRis~~~~---~e~l~~al~rL~~ 434 (462)
T PLN02187 392 VKLAREEN-LVFL--PGDALGLKNWMRITIGVE---AHMLEDALERLKG 434 (462)
T ss_pred HHHHhhCC-EEEE--CccccCCCCeEEEEeCCC---HHHHHHHHHHHHH
Confidence 33445666 4433 322 3469999998754 4555555555544
No 277
>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional
Probab=20.49 E-value=2.6e+02 Score=22.59 Aligned_cols=45 Identities=9% Similarity=0.266 Sum_probs=29.8
Q ss_pred hHHHHHHHhhccccceeecCCCCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 27 APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 27 ap~IKerM~~~Gs~MV~YqPl~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
+..+.+++.++| +++. |. +|-.|+. ..-..|++++|.+++-+++.
T Consensus 420 ~~~~~~~~~~~G-ll~~--~~---g~vi~~~-PpL~it~~ei~~~~~~l~~~ 464 (472)
T PRK08742 420 GLHAYRAALARG-VVLR--PL---GDVLYWM-PPYCVDEAQLALLADTTRHA 464 (472)
T ss_pred HHHHHHHHHHCC-eEEE--ec---CCEEEEE-CCCCCCHHHHHHHHHHHHHH
Confidence 356778889999 4443 22 4645543 11247899999999888764
No 278
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=20.21 E-value=2e+02 Score=19.79 Aligned_cols=23 Identities=22% Similarity=0.446 Sum_probs=18.4
Q ss_pred CCCCChhhHHHHHHHHHHhcccC
Q psy2616 60 NSALDHSDMDYFIDEIERLGHDL 82 (82)
Q Consensus 60 np~~t~~dmD~ll~eIerlG~dl 82 (82)
+|--+.++.+.++++|.+.+.|+
T Consensus 82 ~g~f~~~~~~~i~~~I~~~~pdi 104 (172)
T PF03808_consen 82 HGYFDEEEEEAIINRINASGPDI 104 (172)
T ss_pred CCCCChhhHHHHHHHHHHcCCCE
Confidence 33347889999999999988774
No 279
>PF01142 TruD: tRNA pseudouridine synthase D (TruD); InterPro: IPR001656 Pseudouridine synthases catalyse the isomerisation of uridine to pseudouridine (Psi) in a variety of RNA molecules, and may function as RNA chaperones. Pseudouridine is the most abundant modified nucleotide found in all cellular RNAs. There are four distinct families of pseudouridine synthases that share no global sequence similarity, but which do share the same fold of their catalytic domain(s) and uracil-binding site and are descended from a common molecular ancestor. The catalytic domain consists of two subdomains, each of which has an alpha+beta structure that has some similarity to the ferredoxin-like fold (note: some pseudouridine synthases contain additional domains). The active site is the most conserved structural region of the superfamily and is located between the two homologous domains. These families are []: Pseudouridine synthase I, TruA. Pseudouridine synthase II, TruB, which contains and additional C-terminal PUA domain. Pseudouridine synthase RsuA (ribosomal small subunit) and RluC/RluD (ribosomal large subunits), both of which contain an additional N-terminal alpha-L RNA-binding motif. Pseudouridine synthase TruD, which has a natural circular permutation in the catalytic domain, as well as an insertion of a family-specific alpha+beta subdomain. Pseudouridine synthase TruD modifies uracil-13 in tRNA []. TruD belongs to a recently identified and large family of pseudouridine synthases present in all kingdoms of life []. TruD folds into a V-shaped molecule with an RNA-binding cleft formed between its two domains: a catalytic domain and an insertion domain. The catalytic domain differs in sequence but is structurally very similar to the catalytic domain of other pseudouridine synthases. The insertion (or TRUD) domain displays a novel alpha/beta structure that forms a compact fold titled away from the catalytic domain to form a deep cleft in TruD which is lined with basic residues from each domain. The insertion domain is characterised by two conserved sequence motifs that form a part of the hydrophobic core, as well as by large insertions at several specific sites that are seen in many archaeal and eukaryotic homologues. The insertion domain is likely to be involved in substrate recognition and may represent a RNA binding module []. ; GO: 0003723 RNA binding, 0009982 pseudouridine synthase activity, 0001522 pseudouridine synthesis, 0009451 RNA modification; PDB: 1SB7_B 1SI7_A 1SZW_B 1Z2Z_B.
Probab=20.20 E-value=57 Score=25.48 Aligned_cols=31 Identities=23% Similarity=0.417 Sum_probs=19.7
Q ss_pred CCCCcceEeecCCC--CChhhHHHHHHHHHHhc
Q psy2616 49 ALPNFFRLVLQNSA--LDHSDMDYFIDEIERLG 79 (82)
Q Consensus 49 ~~~NFFR~V~~np~--~t~~dmD~ll~eIerlG 79 (82)
-+||.|++++-+.. -..+.++..+++|.+-|
T Consensus 124 l~GNrF~I~lR~~~~~~~~~~~~~~l~~l~~~G 156 (378)
T PF01142_consen 124 LKGNRFRIVLRDVSDEGDREQIEERLESLKKNG 156 (378)
T ss_dssp CCEEEEEEEEECES-HHHHHHHHHHHHHHHHHC
T ss_pred ccCceEEEEEeeccccchHHHHHHHHHHhccCC
Confidence 44899999986554 12334666666666544
No 280
>PRK09265 aminotransferase AlaT; Validated
Probab=20.11 E-value=2.7e+02 Score=21.18 Aligned_cols=47 Identities=17% Similarity=0.294 Sum_probs=29.1
Q ss_pred HHHHHHHhhccccceeecCC--CCCCCcceEeecCCCCChhhHHHHHHHHHHh
Q psy2616 28 PKIKERMMKSGSMMITYQPI--HALPNFFRLVLQNSALDHSDMDYFIDEIERL 78 (82)
Q Consensus 28 p~IKerM~~~Gs~MV~YqPl--~~~~NFFR~V~~np~~t~~dmD~ll~eIerl 78 (82)
..+.+.+.+.| +.|..-.. ...+++||+.+. .+.+.++..++.|.+.
T Consensus 350 ~~~~~~l~~~g-v~v~pg~~F~~~~~~~~Ri~~~---~~~e~l~~~l~rl~~~ 398 (404)
T PRK09265 350 QFVLDLLLQEK-VLLVQGTGFNWPEPDHFRIVTL---PRVDDLEEAIGRIGRF 398 (404)
T ss_pred HHHHHHHHhCC-EEEECchhhCCCCCCeEEEEeC---CCHHHHHHHHHHHHHH
Confidence 35667777888 44421111 123689999984 4577777777766553
Done!