RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2616
(82 letters)
>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate,
alternative splicing, pyridoxal phosphate (PLP),
structural genomics consortium (SGC); HET: PLP; 1.6A
{Homo sapiens}
Length = 515
Score = 76.7 bits (189), Expect = 2e-18
Identities = 35/58 (60%), Positives = 45/58 (77%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAP +KERM+K GSMMI YQP NFFR+V+ NSAL +DMD+ ++E+ERLG DL
Sbjct: 458 KVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQDL 515
>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET:
LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*
Length = 504
Score = 74.7 bits (184), Expect = 9e-18
Identities = 33/58 (56%), Positives = 42/58 (72%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+VAPKIK MM+SG+ M+ YQP NFFR+V+ N A SD+D+ I+EIERLG DL
Sbjct: 445 KVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQDL 502
>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate
decarboxylase; structural genomics, APC91511.1,
glutamate decarboxylase; HET: MSE; 1.81A {Vibrio
parahaemolyticus}
Length = 497
Score = 63.1 bits (154), Expect = 1e-13
Identities = 8/58 (13%), Positives = 22/58 (37%), Gaps = 1/58 (1%)
Query: 25 QVAPKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
++ ++ + G ++ + + + N L SD + + +I L +L
Sbjct: 440 ELNKALRLEALTRGIAVLGETIVDG-KTALKFTILNPCLTTSDFESLLSKINMLAVEL 496
>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha
beta protein, alternative splicing, catecholamine
biosynthesis, lyase; HET: LLP; 1.75A {Drosophila
melanogaster}
Length = 475
Score = 57.0 bits (138), Expect = 2e-11
Identities = 9/54 (16%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+ +R+ G + + I + F R+ + + DM+Y E+ ++
Sbjct: 419 ALLKRINGRGHIHLVPAKIKDV-YFLRMAICSRFTQSEDMEYSWKEVSAAADEM 471
>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo
sapiens}
Length = 481
Score = 55.9 bits (135), Expect = 4e-11
Identities = 6/54 (11%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+ + + K+G + + I R + + D+ + I +
Sbjct: 426 NVLKEIAKAGRLFLIPATIQDKL-IIRFTVTSQFTTRDDILRDWNLIRDAATLI 478
>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin;
HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB:
1js6_A* 3rch_A* 3rbl_A 3rbf_A*
Length = 486
Score = 52.4 bits (126), Expect = 6e-10
Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 29 KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
+ ER+ + + + + R + + ++ + + I L +L
Sbjct: 422 ALLERINSARKIHLVPCRLRGQF-VLRFAICSRKVESGHVRLAWEHIRGLAAEL 474
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 27.0 bits (59), Expect = 0.77
Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 5/51 (9%)
Query: 33 RMMKSGSMMITYQP-----IHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78
R M+ G + RL + ++ MD D I +L
Sbjct: 377 RSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 25.5 bits (55), Expect = 2.0
Identities = 14/51 (27%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 33 RMMKSGSMMITYQP-----IHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78
R ++ GS ++ P HA F RL + + MDY D + L
Sbjct: 387 RAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 437
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 25.4 bits (55), Expect = 2.2
Identities = 9/51 (17%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Query: 33 RMMKSGSMMITYQP-----IHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78
R ++ GS ++ P + RL + + + MD+ I+ + +
Sbjct: 388 RAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 24.0 bits (51), Expect = 6.8
Identities = 15/73 (20%), Positives = 26/73 (35%), Gaps = 11/73 (15%)
Query: 1 MEPQQGLLEQLHSQSKNSNSSSSLQVAPKIKERMMKSGSMMITYQPIH--ALPNFFRLVL 58
+E Q LL Q+ N S S K++ +++ + + L LVL
Sbjct: 199 LEMLQKLLYQI---DPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-----LVL 250
Query: 59 QNSALDHSDMDYF 71
N + + F
Sbjct: 251 LNVQ-NAKAWNAF 262
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding
domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha
magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana
tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A*
1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Length = 550
Score = 24.0 bits (51), Expect = 7.7
Identities = 13/33 (39%), Positives = 17/33 (51%)
Query: 47 IHALPNFFRLVLQNSALDHSDMDYFIDEIERLG 79
I AL R +L + + +D ID IERLG
Sbjct: 48 IEALKEQTRNMLLATGMKLADTLNLIDTIERLG 80
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable
holliday junction DNA helicase; HET: ADP; 2.69A
{Campylobacter jejuni subsp}
Length = 338
Score = 23.7 bits (52), Expect = 8.4
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 71 FIDEIERL 78
FIDEI RL
Sbjct: 111 FIDEIHRL 118
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide,
hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP:
a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Length = 324
Score = 23.7 bits (52), Expect = 8.6
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 71 FIDEIERL 78
FIDEI RL
Sbjct: 95 FIDEIHRL 102
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase,
winged-helix domain, ATP hydrolysis, walker A, walker B,
sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga
maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A*
1in8_A* 1in7_A* 1j7k_A*
Length = 334
Score = 23.7 bits (52), Expect = 8.7
Identities = 7/8 (87%), Positives = 7/8 (87%)
Query: 71 FIDEIERL 78
FIDEI RL
Sbjct: 107 FIDEIHRL 114
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.130 0.359
Gapped
Lambda K H
0.267 0.0679 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,156,191
Number of extensions: 53168
Number of successful extensions: 164
Number of sequences better than 10.0: 1
Number of HSP's gapped: 160
Number of HSP's successfully gapped: 17
Length of query: 82
Length of database: 6,701,793
Length adjustment: 51
Effective length of query: 31
Effective length of database: 5,277,822
Effective search space: 163612482
Effective search space used: 163612482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 51 (23.5 bits)