RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2616
         (82 letters)



>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId:
           9823]}
          Length = 476

 Score = 43.7 bits (102), Expect = 3e-07
 Identities = 6/54 (11%), Positives = 19/54 (35%), Gaps = 1/54 (1%)

Query: 29  KIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERLGHDL 82
            + ER+  +  + +    +       R  + +  ++   +    + I  L  +L
Sbjct: 422 ALLERINSARKIHLVPCRLRGQF-VLRFAICSRKVESGHVRLAWEHIRGLAAEL 474


>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
           {Escherichia coli [TaxId: 562]}
          Length = 467

 Score = 28.0 bits (61), Expect = 0.11
 Identities = 9/51 (17%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 33  RMMKSGSMMITYQPIH-----ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78
           R ++ GS ++   P             RL +  +    + MD+ I+  + +
Sbjct: 388 RAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHV 438


>d1ikpa2 d.166.1.1 (A:395-606) Exotoxin A, C-terminal domain
           {Pseudomonas aeruginosa [TaxId: 287]}
          Length = 212

 Score = 25.1 bits (54), Expect = 0.94
 Identities = 17/56 (30%), Positives = 29/56 (51%), Gaps = 8/56 (14%)

Query: 28  PKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL-GHDL 82
           P  + R+ ++G+++  Y P  +LP F+R    +  L   +      E+ERL GH L
Sbjct: 93  PDARGRI-RNGALLRVYVPRSSLPGFYR---TSLTLAAPEAA---GEVERLIGHPL 141


>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
           [TaxId: 549]}
          Length = 456

 Score = 25.1 bits (54), Expect = 1.1
 Identities = 10/51 (19%), Positives = 16/51 (31%), Gaps = 5/51 (9%)

Query: 33  RMMKSGSMMITYQP-----IHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78
           R M+ G +                   RL +      ++ MD   D I +L
Sbjct: 377 RSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKL 427


>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
           {Proteus vulgaris [TaxId: 585]}
          Length = 465

 Score = 24.9 bits (53), Expect = 1.3
 Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 5/51 (9%)

Query: 33  RMMKSGSMMITYQPIH-----ALPNFFRLVLQNSALDHSDMDYFIDEIERL 78
           R ++ GS ++   P       A   F RL +      +  MDY  D +  L
Sbjct: 386 RAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGL 436


>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS)
           {Methanococcus maripaludis [TaxId: 39152]}
          Length = 434

 Score = 24.1 bits (51), Expect = 2.3
 Identities = 4/52 (7%), Positives = 19/52 (36%), Gaps = 5/52 (9%)

Query: 27  APKIKERMMKSGSMMITYQPIHALPNFFRLVLQNSALDHSDMDYFIDEIERL 78
            P+  ++    G+  +           + ++     +   D+   + ++E++
Sbjct: 388 GPRGIKKTDHFGNCYLGTYTHD-----YIVMNAAIGVRTEDIVNSVSKLEKI 434


>d1foba_ c.1.8.3 (A:) Beta-1,4-galactanase {Fungus (Aspergillus
           aculeatus) [TaxId: 5053]}
          Length = 334

 Score = 23.9 bits (51), Expect = 3.0
 Identities = 19/75 (25%), Positives = 24/75 (32%), Gaps = 5/75 (6%)

Query: 2   EPQQGLLEQLHSQSKNSN-----SSSSLQVAPKIKERMMKSGSMMITYQPIHALPNFFRL 56
           E + GLL  L   S  SN      S +  V         K    +           F+  
Sbjct: 136 EIRAGLLWPLGETSSYSNIGALLHSGAWGVKDSNLATTPKIMIHLDDGWSWDQQNYFYET 195

Query: 57  VLQNSALDHSDMDYF 71
           VL    L  +D DYF
Sbjct: 196 VLATGELLSTDFDYF 210


>d2bm3a1 b.2.2.2 (A:5-166) Scaffolding dockerin binding protein A,
           SdbA {Clostridium thermocellum [TaxId: 1515]}
          Length = 162

 Score = 23.6 bits (51), Expect = 3.3
 Identities = 6/37 (16%), Positives = 17/37 (45%)

Query: 16  KNSNSSSSLQVAPKIKERMMKSGSMMITYQPIHALPN 52
           K +  +    +  KI  ++++  S  + +Q   ++P 
Sbjct: 102 KETGVAEESGIIAKIGFKILQKKSTAVKFQDTLSMPG 138


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.316    0.130    0.359 

Gapped
Lambda     K      H
   0.267   0.0623    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 280,161
Number of extensions: 10299
Number of successful extensions: 31
Number of sequences better than 10.0: 1
Number of HSP's gapped: 30
Number of HSP's successfully gapped: 12
Length of query: 82
Length of database: 2,407,596
Length adjustment: 48
Effective length of query: 34
Effective length of database: 1,748,556
Effective search space: 59450904
Effective search space used: 59450904
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 47 (22.1 bits)