BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2618
(390 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q01085|TIAR_HUMAN Nucleolysin TIAR OS=Homo sapiens GN=TIAL1 PE=1 SV=1
Length = 375
Score = 349 bits (895), Expect = 3e-95, Method: Compositional matrix adjust.
Identities = 173/281 (61%), Positives = 211/281 (75%), Gaps = 5/281 (1%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDPYAFLEFVHHTVA 59
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E NDPY F+EF H A
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
A ALAAMN R L KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPF
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKSAFAPF 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G+IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA- 179
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ Q ++TK + F++V NQSSP NCTVYCGG L ++L+ + FSPFG I++IRVF
Sbjct: 180 --PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 237
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280
EKGY+FV+F+T E+A HAI S++ T I GH VKC+WGKES
Sbjct: 238 PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 278
>sp|P70318|TIAR_MOUSE Nucleolysin TIAR OS=Mus musculus GN=Tial1 PE=2 SV=1
Length = 392
Score = 347 bits (889), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 206/416 (49%), Positives = 247/416 (59%), Gaps = 51/416 (12%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE------------------ 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQH 61
Query: 43 PGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGD 102
NDPY F+EF H AA ALAAMN R L KE+KVNWA++P +Q K+DTSNH+H+FVGD
Sbjct: 62 TSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNHFHVFVGD 120
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
LSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI M GQWL
Sbjct: 121 LSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWL 180
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEEL 222
G R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG L ++L
Sbjct: 181 GGRQIRTNWATRKPPA---PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQL 237
Query: 223 VSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282
+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+WGKES
Sbjct: 238 MRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES-- 295
Query: 283 NSTLAQPSAPTTPQPNSTAPQFPYIYNQQMGYWY------PQAAAYTATAAQLPQQFYQY 336
P+ T F + Q G W Q Y A Q+P Y
Sbjct: 296 --------------PDMTK-NFQQVDYSQWGQWSQVYGNPQQYGQYMANGWQVP----PY 336
Query: 337 GQLGYPQGYVGMVGRQVP--GWQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
G G P G Q P W G GAQP Q P A Y M FPTQ
Sbjct: 337 GVYGQPWNQQGFGVDQSPSAAWMGGFGAQPPQGQAPPPVIPPPNQAGYGMASFPTQ 392
>sp|P31483|TIA1_HUMAN Nucleolysin TIA-1 isoform p40 OS=Homo sapiens GN=TIA1 PE=1 SV=3
Length = 386
Score = 335 bits (860), Expect = 3e-91, Method: Compositional matrix adjust.
Identities = 184/357 (51%), Positives = 230/357 (64%), Gaps = 28/357 (7%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDPYAFLEFVHHTVAAT 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF H AA
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPK----------QDTSNHYHIFVGDLSPEIETQT 111
ALAAMN R + KE+KVNWA++P +Q K Q + +H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQKKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTED 121
Query: 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171
+K AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW
Sbjct: 122 IKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW 181
Query: 172 STRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG 231
+TRKPPA + S+TK +++DEV NQSSP+NCTVYCGG L E+L+ + FSPFG
Sbjct: 182 ATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFG 238
Query: 232 TIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSA 291
I++IRVF +KGY+FV+F + E+A HAI S++ T I GH VKC+WGKE+ +
Sbjct: 239 QIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMIN------ 292
Query: 292 PTTPQPNSTAPQFPYIYNQQMGYWY---PQAAAYTATAAQLPQQFYQYGQLGYPQGY 345
P Q PQ PY Q G WY Q Y Q+P + YGQ QG+
Sbjct: 293 PVQQQNQIGYPQ-PY---GQWGQWYGNAQQIGQYMPNGWQVP-AYGMYGQAWNQQGF 344
>sp|P52912|TIA1_MOUSE Nucleolysin TIA-1 OS=Mus musculus GN=Tia1 PE=1 SV=1
Length = 386
Score = 332 bits (850), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 184/358 (51%), Positives = 232/358 (64%), Gaps = 30/358 (8%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDPYAFLEFVHHTVAAT 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF H AA
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPKQDTS-----------NHYHIFVGDLSPEIETQ 110
ALAAMN R + KE+KVNWA++P +Q K+DTS +H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+K AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTN
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF 230
W+TRKPPA + S+TK +++DEV +QSSP NCTVYCGG L E+L+ + FSPF
Sbjct: 181 WATRKPPA---PKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 231 GTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPS 290
G I++IRVF +KGY+FV+F++ E+A HAI S++ T I GH VKC+WGKE+ + Q
Sbjct: 238 GQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQ-- 295
Query: 291 APTTPQPNSTAPQFPYIYNQQMGYWY---PQAAAYTATAAQLPQQFYQYGQLGYPQGY 345
Q N +P Y Q G WY Q Y Q+P + YGQ QG+
Sbjct: 296 -----QQNQIG--YPPTYG-QWGQWYGNAQQIGQYVPNGWQVP-AYGVYGQPWSQQGF 344
>sp|Q9LEB4|RBP45_NICPL Polyadenylate-binding protein RBP45 OS=Nicotiana plumbaginifolia
GN=RBP45 PE=1 SV=1
Length = 409
Score = 154 bits (388), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/283 (30%), Positives = 145/283 (51%), Gaps = 13/283 (4%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAA 65
+L++G+L + E L F G + KVIR ++ Y FLEF H A T L
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 66 MNKRVF--LEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFGEI 122
N + +E+ ++NWAS + + D++ H IFVGDL+ ++ L+E F + + +
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEH-TIFVGDLAADVTDYILQETFKSVYSSV 203
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
++V D T +SKGY FV F ++E A+T MNG +R +R + K P T +
Sbjct: 204 RGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQ 263
Query: 183 RKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
+ + T +S P N T++ GG + EE + +VFSP+G +V +++ K
Sbjct: 264 KATYQNPQAT------QGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGK 317
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285
FV+F T+ +A A+ S++ T + G +++ WG+ + T
Sbjct: 318 RCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQT 360
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 97/192 (50%), Gaps = 25/192 (13%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQI-GPVKGCKVI--REPGNDP-YAFLEFVHHTV 58
D+S T++VG+L VT+ +L F + V+G KV+ R G Y F++F +
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 59 AATALAAMNKRVFLEKEMKVNWASS--PGNQPKQDT------------SNHYHIFVGDLS 104
A+ MN + + M++ A++ P P++ T N+ IFVG L
Sbjct: 231 QLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLD 290
Query: 105 PEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS 164
P + + L++ F+P+GE+ + +IV K FV F +A AE A++++NG LG
Sbjct: 291 PTVAEEHLRQVFSPYGELVHVKIV------AGKRCGFVQFGTRASAEQALSSLNGTQLGG 344
Query: 165 RSIRTNWSTRKP 176
+SIR +W R P
Sbjct: 345 QSIRLSWG-RSP 355
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/197 (22%), Positives = 88/197 (44%), Gaps = 35/197 (17%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
++P P + + +++GDL ++ L F GE+ + +++R+ QT +S+GY F
Sbjct: 70 TNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGF 129
Query: 142 VSFVKKAEAENAITAMNGQWLGS--RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
+ F A AE + NG + + ++ R NW++ + +R +S TI
Sbjct: 130 LEFRSHAAAETILQTYNGTLMPNVEQNFRMNWAS-----LGAGERRDDSAEHTI------ 178
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVF-SPFGTIVDIRVF------KEKGYAFVKFTTK 252
+ G D+ + ++ + F S + ++ +V + KGY FVKF +
Sbjct: 179 ----------FVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADE 228
Query: 253 ETATHAIESIHNTDING 269
A+ T++NG
Sbjct: 229 SEQLRAM-----TEMNG 240
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 4 ESQP--TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAAT 61
ES P TT++VG LD +V EE L +FS G + K++ F++F A
Sbjct: 276 ESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIV---AGKRCGFVQFGTRASAEQ 332
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQ 87
AL+++N + ++++W SP ++
Sbjct: 333 ALSSLNGTQLGGQSIRLSWGRSPSSK 358
>sp|Q93W34|RP45C_ARATH Polyadenylate-binding protein RBP45C OS=Arabidopsis thaliana
GN=RBP45C PE=2 SV=1
Length = 415
Score = 152 bits (384), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 84/283 (29%), Positives = 138/283 (48%), Gaps = 13/283 (4%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAA 65
+L++G+L + E L +F G KVIR N + Y F+EFV+H A L
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 66 MNKRVF--LEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFGEI 122
N E+ ++NWA + +Q + +FVGDL+P++ L E F A + +
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSV 200
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
++V D T +SKGY FV F ++E A+T MNGQ+ SR +RT + K P
Sbjct: 201 KGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 183 RKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
QN+ + +S PTN T++ G + + E+ + VF FG +V +++ K
Sbjct: 261 ASYQNTQGNS-------GESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285
FV++ + A A+ ++ T + G +++ WG+ N T
Sbjct: 314 RCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQT 356
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%), Gaps = 5/89 (5%)
Query: 4 ESQPT--TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAAT 61
ES PT T++VG +D SVTE+ L ++F Q G + K+ P F+++ + A
Sbjct: 272 ESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKI---PAGKRCGFVQYANRACAEQ 328
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPKQ 90
AL+ +N + ++++W SP N+ Q
Sbjct: 329 ALSVLNGTQLGGQSIRLSWGRSPSNKQTQ 357
>sp|Q9FPJ8|RB45A_ARATH Polyadenylate-binding protein RBP45A OS=Arabidopsis thaliana
GN=RBP45A PE=2 SV=1
Length = 387
Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/292 (28%), Positives = 144/292 (49%), Gaps = 23/292 (7%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAA 65
+L++G+L + E + ++F+Q G KVIR ++ Y F+EFV H+VA L
Sbjct: 61 SLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAERVLQT 120
Query: 66 MNKRVF--LEKEMKVNWASSPGNQPKQDTSNHYH-IFVGDLSPEIETQTLKEAFAP-FGE 121
N E+ ++NWA + + + T H IFVGDL+PE+ L + F +G
Sbjct: 121 YNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKNVYGS 180
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK-----P 176
+ ++V D T +SKGY FV F + E A+T MNGQ+ +R +R + K
Sbjct: 181 VKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNALPMQ 240
Query: 177 PAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI 236
PAM + N+ + P N T++ GG ++ ++ + +F FG ++ +
Sbjct: 241 PAMYQNTQGANA-----------GDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHV 289
Query: 237 RVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
++ K FV++ K +A HA+ ++ T + G +++ WG+ S AQ
Sbjct: 290 KIPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQ 341
Score = 62.4 bits (150), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 45/195 (23%), Positives = 90/195 (46%), Gaps = 33/195 (16%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
G+Q S+ +++GDL ++ + FA GE ++ +++R+ T +S+GY F+ F
Sbjct: 49 GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEF 108
Query: 145 VKKAEAENAITAMNGQWLGS--RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQS 202
V + AE + NG + S ++ R NW+ A E++ Q+
Sbjct: 109 VSHSVAERVLQTYNGAPMPSTEQTFRLNWAQ----AGAGEKRF---------------QT 149
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVF-SPFGTIVDIRVF------KEKGYAFVKFTTKETA 255
+ T++ G ++ + ++S F + +G++ +V + KGY FV+F +
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 256 THAIESIHNTDINGH 270
A+ T++NG
Sbjct: 210 MRAM-----TEMNGQ 219
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 142 bits (358), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/285 (31%), Positives = 140/285 (49%), Gaps = 16/285 (5%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAA 65
TL++G+L + E L F+ G + KVIR + Y F+EF H A L
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 66 MNKR---VFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFG 120
N F ++ ++NWAS S G+ K+D S Y IFVGDL+ ++ L E F A +
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGD--KRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT 180
+ ++V D T ++KGY FV F ++E A+T MNG +R +R + K +T
Sbjct: 181 SVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK-GVT 239
Query: 181 NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK 240
+R S +T D + P N TV+ GG + ++ + VFS +G IV +++
Sbjct: 240 GQRDSYQSSAAGVTTD-----NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA 294
Query: 241 EKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285
K FV+F+ K A A+ ++ + G TV+ WG+ N +
Sbjct: 295 GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGRSPSNKQS 339
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 85/192 (44%), Gaps = 25/192 (13%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGP-VKGCKVI--REPGNDP-YAFLEFVHHTV 58
D+S T++VG+L VT+ +L F P VKG KV+ R G Y F+ F +
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 59 AATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTS--------------NHYHIFVGDLS 104
A+ MN + M++ A+S Q S N+ +FVG L
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 105 PEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS 164
+ LK F+ +GEI + +I K FV F +K+ AE A+ +NG LG
Sbjct: 270 ASVTDDHLKNVFSQYGEIVHVKIP------AGKRCGFVQFSEKSCAEEALRMLNGVQLGG 323
Query: 165 RSIRTNWSTRKP 176
++R +W R P
Sbjct: 324 TTVRLSWG-RSP 334
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 46/90 (51%), Gaps = 3/90 (3%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
TT++VG LD SVT++ L +FSQ G + K+ P F++F + A AL +N
Sbjct: 261 TTVFVGGLDASVTDDHLKNVFSQYGEIVHVKI---PAGKRCGFVQFSEKSCAEEALRMLN 317
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTSNHYH 97
++++W SP N+ D S Y+
Sbjct: 318 GVQLGGTTVRLSWGRSPSNKQSGDPSQFYY 347
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 141 bits (356), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 92/339 (27%), Positives = 156/339 (46%), Gaps = 27/339 (7%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAA 65
T+++G+L + E L + FSQ G V K+IR ++ Y F+EF H A L +
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS 144
Query: 66 MNKRVF--LEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-FGEI 122
N + E+ ++NWA + + +T + + IFVGDL+ ++ L++ FA + +
Sbjct: 145 YNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSL 204
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
++V D T SKGY FV F ++E A+T MNG + SR++R +T K P+ +
Sbjct: 205 KGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQ 264
Query: 183 RKRQNSHTKTITFDEVY-----------NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG 231
Q + Y + +N T++ GG ++ +E + + F+ FG
Sbjct: 265 YSSQ-----AVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFG 319
Query: 232 TIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSA 291
+V +++ KG FV+F+ + +A AI+ + I V+ WG+ N +
Sbjct: 320 EVVSVKIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGS 379
Query: 292 PTTPQPNSTAPQFPYIY----NQQMGYWYPQAAAYTATA 326
N Y Y NQ G Y AAY A++
Sbjct: 380 QWNGGYNGRQNYGGYGYGASQNQDSGM-YATGAAYGASS 417
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 43/192 (22%), Positives = 85/192 (44%), Gaps = 34/192 (17%)
Query: 87 QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 146
Q + + ++ I++GDL ++ L F+ GE+ + +I+R+ QT +S+ Y FV F
Sbjct: 75 QIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNT 134
Query: 147 KAEAENAITAMNGQWL--GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSP 204
A AE + + NG + + R NW+ T E++ + +
Sbjct: 135 HAAAEKVLQSYNGTMMPNTEQPFRLNWAGFS----TGEKRAE----------------TG 174
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSP-------FGTIVDIRVFKEKGYAFVKFTTKETATH 257
++ +++ G D+ + ++ F+ +VD KGY FV+F + +
Sbjct: 175 SDFSIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSR 234
Query: 258 AIESIHNTDING 269
A+ T++NG
Sbjct: 235 AM-----TEMNG 241
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 51/95 (53%), Gaps = 4/95 (4%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATAL 63
+S TT++VG LD VT+E L F+Q G V K+ P F++F + A A+
Sbjct: 291 DSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSVKI---PAGKGCGFVQFSDRSSAQEAI 347
Query: 64 AAMNKRVFLEKEMKVNWASSPGN-QPKQDTSNHYH 97
++ + ++ ++++W SP N Q + D+ + ++
Sbjct: 348 QKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWN 382
>sp|F4I3B3|RB47A_ARATH Polyadenylate-binding protein RBP47A OS=Arabidopsis thaliana
GN=RBP47A PE=2 SV=1
Length = 445
Score = 139 bits (351), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 91/281 (32%), Positives = 141/281 (50%), Gaps = 13/281 (4%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAA 65
TL+VG+L + E L FS V KVIR ++ Y F+EF+ + A AL +
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 66 MNKRVF--LEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-FGE 121
+ E+ ++NWAS S G + + IFVGDL+P++ L E FA +
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
+ ++V D T +SKGY FV F + E A+T MNG + SR +R +T K A
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYG 299
Query: 182 ERKRQNSHTKTITFDEVYNQS----SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237
++ S T+ N S N T++ GG D+ EE + + FS FG +V ++
Sbjct: 300 QQN--GSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVK 357
Query: 238 VFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
+ KG FV+F +++A AI +++ T I +TV+ WG+
Sbjct: 358 IPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGR 398
Score = 57.8 bits (138), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 4/98 (4%)
Query: 1 MCD-ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVA 59
M D ES +T++VG LD VTEE L FS G V K+ P F++F + A
Sbjct: 319 MSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---PVGKGCGFVQFANRQSA 375
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYH 97
A+ +N V + ++++W SP Q + D+ N ++
Sbjct: 376 EEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWN 413
>sp|Q0WW84|RB47B_ARATH Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana
GN=RBP47B PE=2 SV=1
Length = 435
Score = 137 bits (346), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 89/286 (31%), Positives = 144/286 (50%), Gaps = 18/286 (6%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAA 65
TL+VG+L + E L + FS G V KVIR ++ Y F+EF+ A L
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 66 MNKRVF--LEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-FGE 121
+ V ++ ++NWAS S G + + +FVGDLSP++ L E F+ +
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPS 228
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
+ + ++V D T +SKGY FV F + E A+T MNG + +R +R +T P
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIAT--PKRAIA 286
Query: 182 ERKRQNSHTKTITFDEVYNQS---------SPTNCTVYCGGFGKDLNEELVSKVFSPFGT 232
+++ +S + N S TN T++ GG D+ +E + + FS FG
Sbjct: 287 NQQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGE 346
Query: 233 IVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
+V +++ KG FV+F +++A AIES++ T I +TV+ WG+
Sbjct: 347 VVSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
Score = 48.9 bits (115), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 46/94 (48%), Gaps = 3/94 (3%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATAL 63
ES T++VG +D V +E L FSQ G V K+ P F++F A A+
Sbjct: 317 ESTNATIFVGGIDPDVIDEDLRQPFSQFGEVVSVKI---PVGKGCGFVQFADRKSAEDAI 373
Query: 64 AAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYH 97
++N V + ++++W SP Q + D+ ++
Sbjct: 374 ESLNGTVIGKNTVRLSWGRSPNKQWRGDSGQQWN 407
>sp|Q8VXZ9|R47BP_ARATH Polyadenylate-binding protein RBP47B' OS=Arabidopsis thaliana
GN=RBP47B' PE=2 SV=1
Length = 425
Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 105/354 (29%), Positives = 161/354 (45%), Gaps = 40/354 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAA 65
TL++G+L V E L + FSQ G + KVIR + Y F+EF+ H A L
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 66 MNKRVFLEKEM--KVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFGEI 122
N E+ ++NWAS G+ K D + IFVGDL+P++ L+E F + +
Sbjct: 85 YNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
++V DP T +SKGY FV F +++E A+ MNG + +R +R + +T K N
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPK----KNV 199
Query: 183 RKRQNSHTKTITFDEVYN-------------QSSPTNCTVYCGGFGKDLNEELVSKVFSP 229
+Q TK + V + +S T T+ +++ EE + K FS
Sbjct: 200 GVQQQYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQ 259
Query: 230 FGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQP 289
G ++ +++ KGY +V+F T+ +A A++ + I V+ W K + + Q
Sbjct: 260 LGEVIYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQA 319
Query: 290 SAPTTPQPNSTAPQFPYIYNQQMGYWYPQAAAYTATAAQLPQQFYQYGQLGYPQ 343
PN +N GY AY A Q P Y YG GYPQ
Sbjct: 320 D------PNQ--------WNGYYGY-GQGYDAYAYGATQDP-SVYAYGGYGYPQ 357
Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 44/78 (56%), Gaps = 3/78 (3%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
TT+ V NLD +VTEE L FSQ+G V K+ P Y +++F A A+ M
Sbjct: 237 TTISVANLDQNVTEEELKKAFSQLGEVIYVKI---PATKGYGYVQFKTRPSAEEAVQRMQ 293
Query: 68 KRVFLEKEMKVNWASSPG 85
+V ++ ++++W+ +PG
Sbjct: 294 GQVIGQQAVRISWSKNPG 311
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 134 bits (337), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 92/296 (31%), Positives = 146/296 (49%), Gaps = 39/296 (13%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAATA 62
+ +LYVG+L VTE+LL FS +GPV ++ R+ YA++ F+ A A
Sbjct: 8 RMASLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKA 67
Query: 63 LAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI 122
L MN + K +++ W+ + N +F+ +L I+ +TL E F+ FG+I
Sbjct: 68 LDTMNFDIIKGKSIRLMWSQRDAYLRRSGIGN---VFIKNLDKSIDNKTLYEHFSAFGKI 124
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL-GSRSIRTNWSTRKPPAMTN 181
+ +++ D Q SKGYAFV F ++ A+ AI MNG+ L G + + RK
Sbjct: 125 LSSKVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREA-- 180
Query: 182 ERKRQNSHTKTITFDEVYNQSSP-TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF- 239
E+ +++S TN VY FG D+++E + VFS +G + ++V
Sbjct: 181 ---------------ELRSKASEFTN--VYIKNFGGDMDDERLKDVFSKYGKTLSVKVMT 223
Query: 240 ----KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG---KESENNSTLAQ 288
K KG+ FV F + E A A+E ++ DING + F G K+ E + L Q
Sbjct: 224 DSSGKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLI--FVGRAQKKVERQAELKQ 277
Score = 84.0 bits (206), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 66/276 (23%), Positives = 128/276 (46%), Gaps = 31/276 (11%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + KV+ + G+ YAF+ F + + A A+ MN
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 69 RVFLEKEMKVNWASSPGNQPKQ-----DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS 123
++ K KV + ++ S ++++ + +++ + LK+ F+ +G+
Sbjct: 160 KLL--KGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTL 217
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNER 183
+ +++ D KSKG+ FVSF A+ A+ MNG+ + + I + +K
Sbjct: 218 SVKVMTDSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVE------ 270
Query: 184 KRQNSHTKTITFDEVYNQSSPTNC---TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK 240
RQ + E + C +Y +++E + FS FG+I ++V +
Sbjct: 271 -RQAELKQMF---EQLKRERIRGCQGVKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQ 326
Query: 241 E----KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
E KG+ + F++ E AT A+ T++NG +
Sbjct: 327 EEGQSKGFGLICFSSPEDATKAM-----TEMNGRIL 357
Score = 63.5 bits (153), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 17/185 (9%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATA 62
S+ T +Y+ N + +E L +FS+ G KV+ + + F+ F H A A
Sbjct: 187 SEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKA 246
Query: 63 LAAMNKR------VFL-------EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIET 109
+ MN R +F+ E++ ++ + + +++ +L I+
Sbjct: 247 VEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDD 306
Query: 110 QTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169
+ L+ F+ FG IS +++++ +SKG+ + F +A A+T MNG+ LGS+ +
Sbjct: 307 EKLRNEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSI 364
Query: 170 NWSTR 174
+ R
Sbjct: 365 ALAQR 369
>sp|Q9SX80|R47CP_ARATH Polyadenylate-binding protein RBP47C' OS=Arabidopsis thaliana
GN=RBP47C' PE=2 SV=1
Length = 434
Score = 132 bits (332), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 141/283 (49%), Gaps = 14/283 (4%)
Query: 9 TLYVGNLDVSVTEELLCALFS--QIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATAL 63
T++VG+L + E L + F+ + + KVIR N + Y F+EF H VA L
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVL 163
Query: 64 AAMNKRVF--LEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA-PF 119
N ++ ++NWAS S G + ++ IFVGDL+P++ L E F+ +
Sbjct: 164 QEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
+ ++V D T +SKGY FV F + E A+T MNG SR++R +T P
Sbjct: 224 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT---PRK 280
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
TN ++Q + + F ++ N T++ GG + +E + + FS FG IV +++
Sbjct: 281 TNGYQQQGGYMPSGAF--TRSEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP 338
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282
KG FV+F + A A+E ++ T I TV+ WG+ N
Sbjct: 339 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPAN 381
Score = 53.1 bits (126), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
TT++VG LD SVT+E L FS+ G + K+ P F++FV+ A AL +N
Sbjct: 306 TTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLN 362
Query: 68 KRVFLEKEMKVNWASSPGN-QPKQDTSNHY 96
V ++ ++++W +P N QP+ N +
Sbjct: 363 GTVIGKQTVRLSWGRNPANKQPRDKYGNQW 392
>sp|Q9SX79|RB47C_ARATH Polyadenylate-binding protein RBP47C OS=Arabidopsis thaliana
GN=RBP47C PE=2 SV=1
Length = 432
Score = 131 bits (330), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 138/283 (48%), Gaps = 14/283 (4%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP--VKGCKVIREPGN---DPYAFLEFVHHTVAATAL 63
T++VG+L + E L + F+ + KVIR N + Y F+EF H VA L
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 64 AAMNKRVF--LEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA-PF 119
N ++ ++NWAS S G + ++ IFVGDLSP++ L E F+ +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
+ ++V D T +SKGY FV F + E A+T MNG SR++R +T P
Sbjct: 222 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT---PRK 278
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
TN ++Q + T + N T++ GG + +E + + F+ FG IV +++
Sbjct: 279 TNGYQQQGGYMPNGTLTRP--EGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP 336
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282
KG FV+F + A A+E ++ T I TV+ WG+ N
Sbjct: 337 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPAN 379
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 4/90 (4%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
TT++VG LD SVT+E L F++ G + K+ P F++FV+ A AL +N
Sbjct: 304 TTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKI---PVGKGCGFVQFVNRPNAEEALEKLN 360
Query: 68 KRVFLEKEMKVNWASSPGN-QPKQDTSNHY 96
V ++ ++++W +P N QP+ N +
Sbjct: 361 GTVIGKQTVRLSWGRNPANKQPRDKYGNQW 390
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 127 bits (319), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/298 (30%), Positives = 149/298 (50%), Gaps = 18/298 (6%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATA 62
Q TTL++G L+ VTE + +++ +G K+IR N Y F+EF A++A
Sbjct: 91 QKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPHEASSA 150
Query: 63 LAAMNKRVFLEKEM-KVNWASSPGNQPKQ-DTSNHYHIFVGDLSPEIETQTLKEAFAP-F 119
++ NK + + K+NWAS G + K ++ Y IFVGDLSP + + FA +
Sbjct: 151 MSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSLFASRY 210
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
+ +I+ DPQT S+GY FV F + + ++A+ M GQ G R IR +T P +
Sbjct: 211 NSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLAT--PKSK 268
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPT-------NCTVYCGGFGKDLNEELVSKVFSPFGT 232
+ N ++ Y+ + P N TV+ GG K ++EE + +F FG
Sbjct: 269 AHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLFQNFGE 328
Query: 233 IVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPS 290
IV +++ KG FV+F +++A AI + + ++ WG+ N + +A P+
Sbjct: 329 IVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGR---NQNPIAAPA 383
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 124 bits (312), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 85/280 (30%), Positives = 134/280 (47%), Gaps = 36/280 (12%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAA 65
+LYVG+L VTE +L FS GP+ +V R+ + YA++ F A AL
Sbjct: 12 SLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V + +++ W+ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFDVIKGRPVRIMWSQ---RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNERK 184
++V D SKGY FV F + AE AI MNG L R + + +RK ER+
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK------ERE 180
Query: 185 RQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
+ + K T VY FG D+N+E + ++F +G + ++V
Sbjct: 181 AELGARAKEFT-------------NVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDN 227
Query: 240 -KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
K KG+ FV F E A A++ ++ D+NG ++ F G+
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM--FVGR 265
Score = 104 bits (260), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 73/272 (26%), Positives = 129/272 (47%), Gaps = 23/272 (8%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + ++ + LKE F +G +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN-ERK 184
+++ D KSKG+ FVSF + +A+ A+ MNG+ + +S+ + +K T +RK
Sbjct: 221 KVMTDDNG-KSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRK 279
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ IT + N +Y +++E + K F PFGTI +V E
Sbjct: 280 FEQMKQDRITRYQGVN--------LYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGR 331
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 332 SKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 75.1 bits (183), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 85/183 (46%), Gaps = 17/183 (9%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + +E L +F + GP KV+ + + F+ F H A A+
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MNKRVFLEKEMKVNWASSPGN----------QPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + K M V A Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFLPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 46/89 (51%), Gaps = 8/89 (8%)
Query: 200 NQSSPT--NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTT 251
N S+P+ ++Y G +D+ E ++ + FSP G I+ IRV ++ GYA+V F
Sbjct: 2 NPSAPSYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 252 KETATHAIESIHNTDINGHTVKCFWGKES 280
A A+++++ I G V+ W +
Sbjct: 62 PADAERALDTMNFDVIKGRPVRIMWSQRD 90
Score = 37.7 bits (86), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 34/77 (44%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + +E L F G + KV+ E G + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVATKPLYVALA 368
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 131/274 (47%), Gaps = 34/274 (12%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAA 65
+LYVG+L VTE +L FS GP+ +V R+ + YA++ F A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFDVIKGKPVRIMWSQ---RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNERK 184
++V D SKGY FV F + AE AI MNG L R + + +RK ER+
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK------ERE 180
Query: 185 RQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
+ + K T VY FG+D+++E + ++F FG + ++V
Sbjct: 181 AELGARAKEFT-------------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES 227
Query: 240 -KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 111 bits (278), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 23/272 (8%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN-ERK 184
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T +RK
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ IT + N +Y +++E + K FSPFGTI +V E
Sbjct: 280 FEQMKQDRITRYQGVN--------LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 332 SKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + +E L LF + GP KV+ + + F+ F H A A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MNKRVFLEKEMKVNWASSPG----------NQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + K++ V A Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 200 NQSSPT--NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTT 251
N S+P+ ++Y G D+ E ++ + FSP G I+ IRV ++ GYA+V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 252 KETATHAIESIHNTDINGHTVKCFWGKES 280
A A+++++ I G V+ W +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRD 90
Score = 40.0 bits (92), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + +E L FS G + KV+ E G + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVATKPLYVALA 368
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 123 bits (308), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 131/274 (47%), Gaps = 34/274 (12%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAA 65
+LYVG+L VTE +L FS GP+ +V R+ + YA++ F A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFDVIKGKPVRIMWSQ---RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNERK 184
++V D SKGY FV F + AE AI MNG L R + + +RK ER+
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK------ERE 180
Query: 185 RQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
+ + K T VY FG+D+++E + ++F FG + ++V
Sbjct: 181 AELGARAKEFT-------------NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDES 227
Query: 240 -KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 111 bits (277), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 76/272 (27%), Positives = 132/272 (48%), Gaps = 23/272 (8%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN-ERK 184
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T +RK
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ IT + N +Y +++E + K FSPFGTI +V E
Sbjct: 280 FEQMKQDRITRYQGVN--------LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 332 SKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 77.0 bits (188), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + +E L LF + GP KV+ + + F+ F H A A+
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MNKRVFLEKEMKVNWASSPG----------NQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + K++ V A Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 200 NQSSPT--NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTT 251
N S+P+ ++Y G D+ E ++ + FSP G I+ IRV ++ GYA+V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 252 KETATHAIESIHNTDINGHTVKCFWGKES 280
A A+++++ I G V+ W +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRD 90
Score = 40.0 bits (92), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + +E L FS G + KV+ E G + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVATKPLYVALA 368
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 130/274 (47%), Gaps = 34/274 (12%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAA 65
+LYVG+L VTE +L FS GP+ +V R+ + YA++ F A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFDVIKGKPVRIMWSQ---RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNERK 184
++V D SKGY FV F + AE AI MNG L R + + +RK ER+
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK------ERE 180
Query: 185 RQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
+ + K T VY FG+D+++E + +F FG + ++V
Sbjct: 181 AELGARAKEFT-------------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 240 -KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 23/272 (8%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN-ERK 184
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T +RK
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ IT + N +Y +++E + K FSPFGTI +V E
Sbjct: 280 FEQMKQDRITRYQGVN--------LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 332 SKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + +E L LF + GP KV+ + + F+ F H A A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MNKRVFLEKEMKVNWASSPG----------NQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + K++ V A Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 200 NQSSPT--NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTT 251
N S+P+ ++Y G D+ E ++ + FSP G I+ IRV ++ GYA+V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 252 KETATHAIESIHNTDINGHTVKCFWGKES 280
A A+++++ I G V+ W +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRD 90
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + +E L FS G + KV+ E G + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVATKPLYVALA 368
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 122 bits (307), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 83/274 (30%), Positives = 130/274 (47%), Gaps = 34/274 (12%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAA 65
+LYVG+L VTE +L FS GP+ +V R+ + YA++ F A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFDVIKGKPVRIMWSQ---RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNERK 184
++V D SKGY FV F + AE AI MNG L R + + +RK ER+
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK------ERE 180
Query: 185 RQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
+ + K T VY FG+D+++E + +F FG + ++V
Sbjct: 181 AELGARAKEFT-------------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 240 -KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 23/272 (8%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN-ERK 184
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T +RK
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ IT + N +Y +++E + K FSPFGTI +V E
Sbjct: 280 FEQMKQDRITRYQGVN--------LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 332 SKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 76.6 bits (187), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + +E L LF + GP KV+ + + F+ F H A A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MNKRVFLEKEMKVNWASSPG----------NQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + K++ V A Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 48.5 bits (114), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 200 NQSSPT--NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTT 251
N S+P+ ++Y G D+ E ++ + FSP G I+ IRV ++ GYA+V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 252 KETATHAIESIHNTDINGHTVKCFWGKES 280
A A+++++ I G V+ W +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRD 90
Score = 40.4 bits (93), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + +E L FS G + KV+ E G + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVATKPLYVALA 368
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 122 bits (305), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/281 (29%), Positives = 137/281 (48%), Gaps = 36/281 (12%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALA 64
+LYVG+L VTE +L FS GPV +V R+ + YA++ F A AL
Sbjct: 11 ASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAERALD 70
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V K +++ W+ P S ++F+ +L I+ + L + F+ FG I +
Sbjct: 71 TMNFDVIKGKPIRIMWSQ---RDPSLRKSGVGNVFIKNLDKSIDNKALYDTFSAFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D SKGYAFV F + A+ AI MNG L R + + +RK ER
Sbjct: 128 CKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRK------ER 179
Query: 184 KRQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE- 241
+ + + K T VY FG+++++E + ++FS FG + ++V ++
Sbjct: 180 EAELGAKAKEFT-------------NVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDP 226
Query: 242 ----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
KG+ FV + E A A+E ++ +I+G + F G+
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKII--FVGR 265
Score = 114 bits (286), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 77/271 (28%), Positives = 132/271 (48%), Gaps = 21/271 (7%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F A A+ MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ ++LKE F+ FG+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RDP KSKG+ FVS+ K +A A+ MNG+ + + I + +K E KR
Sbjct: 221 KVMRDPNG-KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K S +Y +++E + K FSPFG+I +V E
Sbjct: 279 KFEQLKQERI------SRYQGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 86.3 bits (212), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/221 (26%), Positives = 107/221 (48%), Gaps = 30/221 (13%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N V +E L LFSQ G KV+R+P + F+ + H A A+
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 66 MN---------------KRVFLEKEMKVNWASSPGNQPKQDTSNHY---HIFVGDLSPEI 107
MN K+V + E+K + Q KQ+ + Y ++++ +L I
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKF-----EQLKQERISRYQGVNLYIKNLDDTI 305
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ + L++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ +
Sbjct: 306 DDEKLRKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPL 363
Query: 168 RTNWSTRKPPA---MTNERKRQNSHTKTITFDEVYNQSSPT 205
+ RK +TN+ ++ + + + + + NQ P
Sbjct: 364 YVALAQRKEERKAHLTNQYMQRVAGMRALPANAILNQFQPA 404
Score = 40.0 bits (92), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LY+ NLD ++ +E L FS G + KV+ E G + F+ F A A+
Sbjct: 292 QGVNLYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
MN R+ K + V A Q K++ H
Sbjct: 352 EMNGRIVGSKPLYVALA-----QRKEERKAH 377
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 84/280 (30%), Positives = 133/280 (47%), Gaps = 36/280 (12%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAA 65
+LYVG+L VTE +L FS GP+ +V R+ + YA++ F A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFDVIKGKPVRIMWSQ---RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNERK 184
++V D SKGY FV F + AE AI MNG L R + + +RK ER+
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK------ERE 180
Query: 185 RQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
+ + K T VY FG+D+++E + + F +G + ++V
Sbjct: 181 AELGARAKEFT-------------NVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDH 227
Query: 240 -KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
K +G+ FV F E A A++ ++ D+NG + F G+
Sbjct: 228 GKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI--FVGR 265
Score = 103 bits (258), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/272 (26%), Positives = 131/272 (48%), Gaps = 23/272 (8%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F +G +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN-ERK 184
+++ D KS+G+ FVSF + +A+ A+ MNG+ L ++I + +K T +RK
Sbjct: 221 KVMTDDHG-KSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRK 279
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ IT + N +Y +++E + K F+PFG+I +V E
Sbjct: 280 FEQMKQDRITRYQGVN--------LYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGR 331
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 332 SKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 50/188 (26%), Positives = 86/188 (45%), Gaps = 27/188 (14%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + +E L F Q G KV+ + + F+ F H A A+
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 66 MN---------------KRVFLEKEMKVNWASSPGNQPKQDTSNHY---HIFVGDLSPEI 107
MN K+V + E+K + Q KQD Y +++V +L I
Sbjct: 251 MNGKDLNGKAIFVGRAQKKVERQTELKRKF-----EQMKQDRITRYQGVNLYVKNLDDGI 305
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ + L++ F PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ +
Sbjct: 306 DDERLRKEFTPFGSITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 363
Query: 168 RTNWSTRK 175
+ RK
Sbjct: 364 YVALAQRK 371
Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 45/89 (50%), Gaps = 8/89 (8%)
Query: 200 NQSSPT--NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTT 251
N S+P+ ++Y G D+ E ++ + FSP G I+ IRV ++ GYA+V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 252 KETATHAIESIHNTDINGHTVKCFWGKES 280
A A+++++ I G V+ W +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRD 90
Score = 39.3 bits (90), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + +E L F+ G + KV+ E G + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVATKPLYVALA 368
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 85/278 (30%), Positives = 129/278 (46%), Gaps = 33/278 (11%)
Query: 5 SQPT-TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAA 60
S PT +LYVG+L VTE +L FS GP+ ++ R+ G+ YA++ F H A
Sbjct: 7 SYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
AL MN V K +++ W+ P S +IFV +L I + L + + FG
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQ---RDPSLRKSGVGNIFVKNLDKSINNKALYDTVSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKPPAM 179
I +C +V D SKGY FV F AE AI MNG L R + + +RK
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRK---- 177
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
ER+ + + VY FG+D+++E + +F FG + ++V
Sbjct: 178 --EREAE------------LGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 223
Query: 240 -----KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 224 TDESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 81/281 (28%), Positives = 133/281 (47%), Gaps = 41/281 (14%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMN- 67
++V NLD S+ + L S G + C V+ E G+ Y F+ F H A A+ MN
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 68 -----KRVFL-----EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117
++VF+ KE + + P ++++ + +++ + LK+ F
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFP--------NVYIKNFGEDMDDERLKDLFG 212
Query: 118 PFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
FG + +++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K
Sbjct: 213 KFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVE 271
Query: 178 AMTNERKRQNSHTK--TITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVD 235
T E KR K IT +V N +Y +++E + K FSPFGTI
Sbjct: 272 RQT-ELKRTFEQMKQDRITRYQVVN--------LYVKNLDDGIDDERLRKAFSPFGTITS 322
Query: 236 IRVFKE----KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
+V E KG+ FV F++ E AT A+ T++NG V
Sbjct: 323 AKVMMEGGRSKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 87.8 bits (216), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 95/220 (43%), Gaps = 37/220 (16%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL P++ L E F+P G I + RI RD T S YA+V+F +AE+A+ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAEHALDTM 72
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N + + +R WS R P ++ V N ++ K
Sbjct: 73 NFDVIKGKPVRIMWSQRDP---------------SLRKSGVGN--------IFVKNLDKS 109
Query: 218 LNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHNTDINGHTVK 273
+N + + S FG I+ V + KGY FV F T E A AI+ ++ +NG K
Sbjct: 110 INNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGR--K 167
Query: 274 CFWGKESENNSTLAQPSAPTTPQPNSTAPQFPYIYNQQMG 313
F G+ A+ A A +FP +Y + G
Sbjct: 168 VFVGQFKSRKEREAELGA--------RAKEFPNVYIKNFG 199
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/181 (27%), Positives = 86/181 (47%), Gaps = 17/181 (9%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAAMN 67
+Y+ N + +E L LF + GP KV+ + + F+ F H A A+ MN
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 68 KRVFLEKEMKVNWASSPGN----------QPKQDTSNHYHI---FVGDLSPEIETQTLKE 114
+ K++ V A Q KQD Y + +V +L I+ + L++
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 115 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174
AF+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + + R
Sbjct: 313 AFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 175 K 175
K
Sbjct: 371 K 371
Score = 40.8 bits (94), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + +E L FS G + KV+ E G + F+ F A A+
Sbjct: 292 QVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVATKPLYVALA 368
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 121 bits (303), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 82/274 (29%), Positives = 129/274 (47%), Gaps = 34/274 (12%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAA 65
+LYVG+L TE +L FS GP+ +V R+ + YA++ F A AL
Sbjct: 12 SLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ P S +IF+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFDVIKGKPVRIMWSQ---RDPSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNERK 184
++V D SKGY FV F + AE AI MNG L R + + +RK ER+
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK------ERE 180
Query: 185 RQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
+ + K T VY FG+D+++E + +F FG + ++V
Sbjct: 181 AELGARAKEFT-------------NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDES 227
Query: 240 -KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 228 GKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 132/272 (48%), Gaps = 23/272 (8%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN-ERK 184
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T +RK
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRK 279
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ IT + N +Y +++E + K FSPFGTI +V E
Sbjct: 280 FEQMKQDRITRYQGVN--------LYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGR 331
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 332 SKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 87/183 (47%), Gaps = 17/183 (9%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + +E L LF + GP KV+ + + F+ F H A A+
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MNKRVFLEKEMKVNWASSPG----------NQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + K++ V A Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 44/89 (49%), Gaps = 8/89 (8%)
Query: 200 NQSSPT--NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTT 251
N S+P+ ++Y G D E ++ + FSP G I+ IRV ++ GYA+V F
Sbjct: 2 NPSAPSYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQ 61
Query: 252 KETATHAIESIHNTDINGHTVKCFWGKES 280
A A+++++ I G V+ W +
Sbjct: 62 PADAERALDTMNFDVIKGKPVRIMWSQRD 90
Score = 40.4 bits (93), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 26/77 (33%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + +E L FS G + KV+ E G + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVATKPLYVALA 368
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 119 bits (297), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 127/273 (46%), Gaps = 32/273 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAATALAA 65
+LY+G+L VTE +L FS GP+ +V R+ YA++ F A AL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V + +++ W+ K N +F+ +L I+ + L + F+ FG+I +C
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGN---VFIKNLDDSIDNKALYDTFSAFGDILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++V D S+GY FV F + A AI MNG L R + + R+R
Sbjct: 129 KVVCD--EYGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH-------FKSRRER 179
Query: 186 QNSH-TKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----- 239
+ + K + F VY FG+D++++ + ++FS FG + ++V
Sbjct: 180 ELEYGAKVMEF-----------TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSG 228
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
+ +G+ FV + E A A+ ++ ++NG V
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
Score = 102 bits (254), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 21/271 (7%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F+ FG +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D + +S+G+ FV++ EA+ A+T MNG+ + R + + ++ E KR
Sbjct: 221 KVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRI-ERQGELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E N+ N +Y ++++ + K FSP+GTI +V E
Sbjct: 279 KFEQIK----QERINRYQGVN--LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 65.9 bits (159), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 27/188 (14%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + ++ L +FS G KV+ + + F+ + +H A A+
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 66 MN---------------KRVFLEKEMKVNWASSPGNQPKQDTSNHY---HIFVGDLSPEI 107
MN KR+ + E+K + Q KQ+ N Y +++V +L I
Sbjct: 251 MNGKEVNGRMVYVGRAQKRIERQGELKRKF-----EQIKQERINRYQGVNLYVKNLDDGI 305
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ L++ F+P+G I++ +++ + SKG+ FV F EA A+T MNG+ + ++ +
Sbjct: 306 DDDRLRKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 168 RTNWSTRK 175
+ RK
Sbjct: 364 YVALAQRK 371
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIE 260
++Y G D+ E ++ + FSP G I+ IRV ++ GYA++ F A A++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 261 SIHNTDINGHTVKCFWGKES 280
+++ I G ++ W +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRD 90
Score = 37.4 bits (85), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + ++ L FS G + KV+ E G+ + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVSTKPLYVALA 368
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 119 bits (297), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 74/273 (27%), Positives = 126/273 (46%), Gaps = 32/273 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAATALAA 65
+LYVG+L VTE +L FS GP+ +V R+ YA++ F A AL
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V + +++ W+ K N +F+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGN---VFIKNLDESIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++V D S+GY FV F + A AI MNG L R + + R+R
Sbjct: 129 KVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGH-------FKSRRER 179
Query: 186 QNSH-TKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----- 239
+ + K + F VY FG+D++++ + ++FS FG + ++V
Sbjct: 180 ELEYGAKVMEF-----------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTG 228
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
+ +G+ FV + E A A+ ++ ++NG +
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Score = 102 bits (255), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 71/271 (26%), Positives = 132/271 (48%), Gaps = 21/271 (7%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F A A+ MN
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + L+E F+ FG +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D T +S+G+ FV++ EA+ A++ MNG+ + R I + ++ E KR
Sbjct: 221 KVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRI-ERQGELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E N+ N +Y ++++ + K FSP+GTI +V E
Sbjct: 279 KFEQIK----QERINRYQGVN--LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 67.0 bits (162), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 27/188 (14%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + ++ L +FS G KV+ + + F+ + +H A A++
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 66 MN---------------KRVFLEKEMKVNWASSPGNQPKQDTSNHY---HIFVGDLSPEI 107
MN KR+ + E+K + Q KQ+ N Y +++V +L I
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKF-----EQIKQERINRYQGVNLYVKNLDDGI 305
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ L++ F+P+G I++ +++ + SKG+ FV F EA A+T MNG+ + ++ +
Sbjct: 306 DDDRLRKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 168 RTNWSTRK 175
+ RK
Sbjct: 364 YVALAQRK 371
Score = 46.2 bits (108), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 40/80 (50%), Gaps = 6/80 (7%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIE 260
++Y G D+ E ++ + FSP G I+ IRV ++ GYA++ F A A++
Sbjct: 11 ASLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALD 70
Query: 261 SIHNTDINGHTVKCFWGKES 280
+++ I G ++ W +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRD 90
Score = 38.1 bits (87), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + ++ L FS G + KV+ E G+ + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVSTKPLYVALA 368
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 117 bits (294), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 73/273 (26%), Positives = 125/273 (45%), Gaps = 32/273 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFVHHTVAATALAA 65
+LY+G+L VTE +L FS GP+ +V R+ YA++ F A AL
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V + +++ W+ K N +F+ +L I+ + L + F+ FG I +C
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLRKSGVGN---VFIKNLDESIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++V D S+GY FV F A AI MNG L R + + R+R
Sbjct: 129 KVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGH-------FKSRRER 179
Query: 186 QNSH-TKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----- 239
+ + K + F VY FG+D++++ + ++FS FG + ++V
Sbjct: 180 ELEYGAKVMEF-----------TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSG 228
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
+ +G+ FV + E A A+ ++ ++NG +
Sbjct: 229 RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 70/271 (25%), Positives = 133/271 (49%), Gaps = 21/271 (7%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFVHHTVAATALAAMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F H A A+ MN
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + L+E F+ FG +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D + +S+G+ FV++ EA+ A++ MNG+ + R I + ++ + E KR
Sbjct: 221 KVMMD-DSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQS-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E N+ N +Y ++++ + K F P+GTI +V E
Sbjct: 279 KFEQIK----QERINRYQGVN--LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 88/188 (46%), Gaps = 27/188 (14%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N + ++ L +FS G KV+ + + F+ + +H A A++
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 66 MN---------------KRVFLEKEMKVNWASSPGNQPKQDTSNHY---HIFVGDLSPEI 107
MN KR+ + E+K + Q KQ+ N Y +++V +L I
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKF-----EQIKQERINRYQGVNLYVKNLDDGI 305
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ L++ F P+G I++ +++ + SKG+ FV F EA A+T MNG+ + ++ +
Sbjct: 306 DDDRLRKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPL 363
Query: 168 RTNWSTRK 175
+ RK
Sbjct: 364 YVALAQRK 371
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 39/80 (48%), Gaps = 6/80 (7%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKETATHAIE 260
++Y G D+ E ++ + FSP G I+ IRV ++ YA++ F A A++
Sbjct: 11 ASLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALD 70
Query: 261 SIHNTDINGHTVKCFWGKES 280
+++ I G ++ W +
Sbjct: 71 TMNFEVIKGRPIRIMWSQRD 90
Score = 35.4 bits (80), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 1/77 (1%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAATALA 64
Q LYV NLD + ++ L F G + KV+ E G+ + F+ F A A+
Sbjct: 292 QGVNLYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHSKGFGFVCFSSPEEATKAVT 351
Query: 65 AMNKRVFLEKEMKVNWA 81
MN R+ K + V A
Sbjct: 352 EMNGRIVSTKPLYVALA 368
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 82/291 (28%), Positives = 141/291 (48%), Gaps = 31/291 (10%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAA 60
E+ +LYVG+L+ SV+E L +FS IG V +V R+ YA++ F H
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
A+ +N + ++ W+ + K+ + N IF+ +L P+I+ + L + F+ FG
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGN---IFIKNLHPDIDNKALYDTFSVFG 150
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT 180
+I + +I D + KSKG+ FV F ++ A+ AI A+NG L + I P
Sbjct: 151 DILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV-----APHLSR 204
Query: 181 NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK 240
ER Q TK + TN +Y + +E ++F+ FG IV + K
Sbjct: 205 KERDSQLEETK----------AHYTN--LYVKNINSETTDEQFQELFAKFGPIVSASLEK 252
Query: 241 E-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTL 286
+ KG+ FV + E A A+E+++++++NG K + G+ + N +
Sbjct: 253 DADGKLKGFGFVNYEKHEDAVKAVEALNDSELNGE--KLYVGRAQKKNERM 301
Score = 82.8 bits (203), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 60/261 (22%), Positives = 118/261 (45%), Gaps = 18/261 (6%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAAM 66
+++ NL + + L FS G + K+ + + F+ F A A+ A+
Sbjct: 127 NIFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDAL 186
Query: 67 NKRVFLEKEMKV--NWASSPGNQPKQDTSNHY-HIFVGDLSPEIETQTLKEAFAPFGEIS 123
N + +E+ V + + + ++T HY +++V +++ E + +E FA FG I
Sbjct: 187 NGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIV 246
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNER 183
+ + +D K KG+ FV++ K +A A+ A+N L + + +K M +
Sbjct: 247 SASLEKDADG-KLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLK 305
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
K+ ++ + + ++ +++E + + F+P+GTI +V
Sbjct: 306 KQYEAY-------RLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTEN 358
Query: 240 -KEKGYAFVKFTTKETATHAI 259
K KG+ FV F+T E AT AI
Sbjct: 359 GKSKGFGFVCFSTPEEATKAI 379
Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/183 (25%), Positives = 84/183 (45%), Gaps = 16/183 (8%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND--PYAFLEFVHHTVAATALAA 65
T LYV N++ T+E LF++ GP+ + ++ + F+ + H A A+ A
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 66 MNKRVFLEKEMKVNWASSPGNQ-------------PKQDTSNHYHIFVGDLSPEIETQTL 112
+N +++ V A + K ++FV +L ++ + L
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKL 338
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
+E FAP+G I++ +++R + KSKG+ FV F EA AIT N Q + + + +
Sbjct: 339 EEEFAPYGTITSAKVMR-TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 173 TRK 175
RK
Sbjct: 398 QRK 400
>sp|P32588|PUB1_YEAST Nuclear and cytoplasmic polyadenylated RNA-binding protein PUB1
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PUB1 PE=1 SV=4
Length = 453
Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/174 (35%), Positives = 97/174 (55%), Gaps = 5/174 (2%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAAT 61
E+ LYVGNLD ++TE++L F GP+ K++ + N YAF+E+ A
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANI 130
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE 121
AL +N + +K+NWA DT +++FVGDL+ ++ +TL+ AF F
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDT---FNLFVGDLNVNVDDETLRNAFKDFPS 187
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
+ ++ D QT S+GY FVSF + +A+NA+ +M GQ L R +R NW+ ++
Sbjct: 188 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKR 241
Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/190 (22%), Positives = 92/190 (48%), Gaps = 30/190 (15%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG+L I LK+ F G I+N +I+ D K+ YAFV + + +A A+ +
Sbjct: 77 LYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNN-KNVNYAFVEYHQSHDANIALQTL 135
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
NG+ + + ++ NW+ + ++ + D+ +N ++ G +
Sbjct: 136 NGKQIENNIVKINWAFQ---------------SQQSSSDDTFN--------LFVGDLNVN 172
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
+++E + F F + + D++ +GY FV FT+++ A +A++S+ D+NG
Sbjct: 173 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 232
Query: 272 VKCFWGKESE 281
++ W + +
Sbjct: 233 LRINWAAKRD 242
Score = 51.6 bits (122), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 196 DEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETA 255
D + + P T Y G E + +F FG I+D + + EKG F+K+ T E A
Sbjct: 330 DHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQA 389
Query: 256 THAIESIHNTDINGHTVKCFWGKESEN 282
I ++ N G ++ WGKE N
Sbjct: 390 AVCIVALANFPFQGRNLRTGWGKERSN 416
Score = 42.7 bits (99), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/86 (24%), Positives = 45/86 (52%), Gaps = 5/86 (5%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG-----YAFVKFTTKETATHAI 259
++ +Y G K + E+++ + F G I +I++ +K YAFV++ A A+
Sbjct: 73 SDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIAL 132
Query: 260 ESIHNTDINGHTVKCFWGKESENNST 285
++++ I + VK W +S+ +S+
Sbjct: 133 QTLNGKQIENNIVKINWAFQSQQSSS 158
Score = 33.9 bits (76), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 3/79 (3%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
TT Y+GN+ TE L LF G + K E G F+++ H AA + A+
Sbjct: 341 TTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKG---CCFIKYDTHEQAAVCIVALA 397
Query: 68 KRVFLEKEMKVNWASSPGN 86
F + ++ W N
Sbjct: 398 NFPFQGRNLRTGWGKERSN 416
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 115 bits (288), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 79/278 (28%), Positives = 134/278 (48%), Gaps = 31/278 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAATALAA 65
+LYVG LD SVTE +L LFS IG V +V R+ YA++ + + AL
Sbjct: 52 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 111
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + K ++ W+ P + ++F+ +L I+ + L + FA FG I +C
Sbjct: 112 LNYTLIKGKPCRIMWSQ---RDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 168
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ +D + SKGY FV + A NAI +NG L + + K + R
Sbjct: 169 KVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK-------KDR 220
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
Q+ FDE+ +++ TN +Y D+ EE K+F FG I + ++
Sbjct: 221 QSK------FDEM--KANFTN--IYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGK 270
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
+G+ FV ++T E+A A++ +H+ ++ T K + G+
Sbjct: 271 SRGFGFVNYSTHESAQAAVDEMHDKEV--KTQKLYVGR 306
Score = 84.7 bits (208), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 116/237 (48%), Gaps = 13/237 (5%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFVHHTVAATALAAMN 67
+++ NLD ++ + L F+ G + CKV ++ GN Y F+ + A A+ +N
Sbjct: 141 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 200
Query: 68 KRVFLEKEMKV-NWASSPGNQPKQD--TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V + S Q K D +N +I++ ++ P++ + ++ F FGEI++
Sbjct: 201 GMLLNDKKVFVGHHISKKDRQSKFDEMKANFTNIYIKNIDPDVTEEEFRKIFEQFGEITS 260
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ RDP+ KS+G+ FV++ A+ A+ M+ + + ++ + + +K +
Sbjct: 261 ATLSRDPEG-KSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKK-------HE 312
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
R+ K + S +Y D+++E + ++F P+GTI +V ++
Sbjct: 313 REEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 369
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 28/197 (14%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
+SSP + + + ++VG+L P + L E F+ G++++ R+ RD T +S GYA
Sbjct: 36 SSSPTSPNNNNQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYA 95
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYN 200
+V++ A+ E A+ +N + + R WS R P + KT
Sbjct: 96 YVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP-----------ALRKT-------- 136
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFVKFTTKETA 255
V+ ++ + + F+ FG I+ +V ++ KGY FV + T E A
Sbjct: 137 ----GQGNVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAA 192
Query: 256 THAIESIHNTDINGHTV 272
+AI+ ++ +N V
Sbjct: 193 NNAIKHVNGMLLNDKKV 209
Score = 59.7 bits (143), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/235 (20%), Positives = 93/235 (39%), Gaps = 67/235 (28%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ N+D VTEE +F Q G + + R+P + F+ + H A A+
Sbjct: 232 TNIYIKNIDPDVTEEEFRKIFEQFGEITSATLSRDPEGKSRGFGFVNYSTHESAQAAVDE 291
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQ----------DTSNHY---HIFVGDLSPEIETQTL 112
M+ + +++ V A + ++ + ++ Y +++V +L+ +++ + L
Sbjct: 292 MHDKEVKTQKLYVGRAQKKHEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKL 351
Query: 113 KEAFAPFGEISNCRIVRD---------PQTLK---------------------------- 135
+E F P+G I++ +++RD P + K
Sbjct: 352 RELFGPYGTITSAKVMRDSTPAERTETPDSEKEKEVNKENEKKEDEEKAAEEKPKESDEE 411
Query: 136 ---------------SKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
SKG+ FV F EA A+T MN + + + + + RK
Sbjct: 412 KKDETKKSDKKLLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 466
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 80/279 (28%), Positives = 133/279 (47%), Gaps = 32/279 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAA 65
+LYVG LD SVTE +L LFS IG V +V R+ + YA++ + + AL
Sbjct: 56 SLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 115
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + + ++ W+ P + ++F+ +L I+ + L + FA FG I +C
Sbjct: 116 LNYTLIKGRPCRIMWSQ---RDPALRKTGQGNVFIKNLDTAIDNKALHDTFAAFGNILSC 172
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ +D + SKGY FV + A+NAI +NG L + + K + R
Sbjct: 173 KVAQD-EFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAK-------KDR 224
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV------DIRVF 239
Q+ F+E+ +++ TN VY +D EE +F FG I D
Sbjct: 225 QSK------FEEM--KANFTN--VYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESG 274
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
K +G+ FV FT+ + A A+E++++ D G K + G+
Sbjct: 275 KSRGFGFVNFTSHDNAAAAVEALNDKDFKGQ--KLYVGR 311
Score = 82.8 bits (203), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 50/238 (21%), Positives = 112/238 (47%), Gaps = 12/238 (5%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFVHHTVAATALAAM 66
+++ NLD ++ + L F+ G + CKV ++ GN Y F+ + A A+ +
Sbjct: 144 NVFIKNLDTAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAAQNAIKHV 203
Query: 67 NKRVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS 123
N + +K++ V + ++ ++ +N +++V ++ + + ++ F FGEI+
Sbjct: 204 NGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFTNVYVKNIDQDTTEEEFRDLFEKFGEIT 263
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNER 183
+ + RD ++ KS+G+ FV+F A A+ A+N + + + + +K
Sbjct: 264 SATLARDAESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKK-------H 316
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
+R+ K + S +Y D+++E + ++FS +GTI +V ++
Sbjct: 317 EREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDEKLRELFSSYGTITSAKVMRD 374
Score = 60.8 bits (146), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/140 (24%), Positives = 70/140 (50%), Gaps = 18/140 (12%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAATALA 64
T +YV N+D TEE LF + G + + R+ + + F+ F H AA A+
Sbjct: 236 TNVYVKNIDQDTTEEEFRDLFEKFGEITSATLARDAESGKSRGFGFVNFTSHDNAAAAVE 295
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTSNHY--------------HIFVGDLSPEIETQ 110
A+N + F +++ V A ++ +++ Y ++++ +LS +I+ +
Sbjct: 296 ALNDKDFKGQKLYVGRAQKK-HEREEELRKQYEAARIEKASKYQGVNLYIKNLSDDIDDE 354
Query: 111 TLKEAFAPFGEISNCRIVRD 130
L+E F+ +G I++ +++RD
Sbjct: 355 KLRELFSSYGTITSAKVMRD 374
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATH 257
P + ++Y G + E ++ ++FS G + IRV ++ GYA+V +
Sbjct: 52 PHSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 111
Query: 258 AIESIHNTDINGHTVKCFW 276
A+E ++ T I G + W
Sbjct: 112 ALEDLNYTLIKGRPCRIMW 130
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 112 bits (281), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 82/284 (28%), Positives = 138/284 (48%), Gaps = 33/284 (11%)
Query: 5 SQP--TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVA 59
SQP +LYVG LD SVTE +L LFS IG V +V R+ + YA++ + +
Sbjct: 44 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 103
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
AL +N + K ++ W+ P + ++F+ +L I+ + L + FA F
Sbjct: 104 ERALEDLNYTLIKGKPCRIMWSQ---RDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 160
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G I +C++ +D + SKGY FV + A NAI +NG L + + K
Sbjct: 161 GNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK---- 215
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ RQ+ F+E+ +++ TN VY +D+ EE ++F FG I +
Sbjct: 216 ---KDRQSK------FEEM--KANFTN--VYIKNIDQDVTEEEFRELFEKFGEITSATLS 262
Query: 240 KE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
++ +G+ FV F+T E+A A++ ++ +I T K + G+
Sbjct: 263 RDQEGKSRGFGFVNFSTHESAQAAVDEMNEKEI--RTQKLYVGR 304
Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 52/238 (21%), Positives = 114/238 (47%), Gaps = 13/238 (5%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFVHHTVAATALAAM 66
+++ NLD ++ + L F+ G + CKV ++ GN Y F+ + A A+ +
Sbjct: 138 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 197
Query: 67 NKRVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS 123
N + +K++ V S ++ ++ +N ++++ ++ ++ + +E F FGEI+
Sbjct: 198 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQDVTEEEFRELFEKFGEIT 257
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNER 183
+ + RD Q KS+G+ FV+F A+ A+ MN + + ++ + + +K
Sbjct: 258 SATLSRD-QEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKK-------H 309
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
+R+ K + S +Y D+++E + ++F P+GTI +V ++
Sbjct: 310 EREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFGPYGTITSAKVMRD 367
Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 69/139 (49%), Gaps = 17/139 (12%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDPYAFLEFVHHTVAATALAA 65
T +Y+ N+D VTEE LF + G + + R E + + F+ F H A A+
Sbjct: 230 TNVYIKNIDQDVTEEEFRELFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVDE 289
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHY--------------HIFVGDLSPEIETQT 111
MN++ +++ V A ++ +++ Y +++V +L+ +++ +
Sbjct: 290 MNEKEIRTQKLYVGRAQKK-HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 348
Query: 112 LKEAFAPFGEISNCRIVRD 130
L+E F P+G I++ +++RD
Sbjct: 349 LRELFGPYGTITSAKVMRD 367
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 112 bits (279), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 80/284 (28%), Positives = 139/284 (48%), Gaps = 33/284 (11%)
Query: 5 SQP--TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVA 59
SQP +LYVG LD SVTE +L LFS IG V +V R+ + YA++ + +
Sbjct: 47 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 106
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
AL +N + K ++ W+ P + ++F+ +L I+ + L + FA F
Sbjct: 107 ERALEDLNYTLIKGKPCRIMWSQ---RDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 163
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G I +C++ +D + SKGY FV + A NAI +NG L + + K
Sbjct: 164 GNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK---- 218
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ RQ+ F+E+ +++ TN VY +++ +E K+F FG I +
Sbjct: 219 ---KDRQSK------FEEM--KANFTN--VYIKNIDQEVTDEEFRKMFEKFGEITSATLS 265
Query: 240 KE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
++ +G+ FV F+T ++A A++ +++ +I G K + G+
Sbjct: 266 RDQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQ--KLYVGR 307
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 114/237 (48%), Gaps = 13/237 (5%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFVHHTVAATALAAMN 67
+++ NLD ++ + L F+ G + CKV ++ GN Y F+ + A A+ +N
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 201
Query: 68 KRVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V S ++ ++ +N ++++ ++ E+ + ++ F FGEI++
Sbjct: 202 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITS 261
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ RD Q KS+G+ FV+F A+ A+ MN + + + + + +K +
Sbjct: 262 ATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKK-------HE 313
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
R+ K + S +Y D+++E + ++FSPFGTI +V ++
Sbjct: 314 REEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 79.7 bits (195), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 28/203 (13%)
Query: 75 EMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL 134
E+ ++SP P + ++VG+L P + L E F+ G++++ R+ RD T
Sbjct: 31 EVTAVESASPSTTPSASQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR 90
Query: 135 KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
+S GYA+V++ A+ E A+ +N + + R WS R P + KT
Sbjct: 91 RSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP-----------ALRKT-- 137
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFVKF 249
V+ ++ + + F+ FG I+ +V ++ KGY FV +
Sbjct: 138 ----------GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHY 187
Query: 250 TTKETATHAIESIHNTDINGHTV 272
T E A +AI+ ++ +N V
Sbjct: 188 ETAEAANNAIKHVNGMLLNDKKV 210
Score = 63.2 bits (152), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 48/230 (20%), Positives = 92/230 (40%), Gaps = 63/230 (27%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDPYAFLEFVHHTVAATALAA 65
T +Y+ N+D VT+E +F + G + + R E + + F+ F H A A+
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHY--------------HIFVGDLSPEIETQT 111
MN + +++ V A ++ +++ Y +++V +L+ +++ +
Sbjct: 293 MNDKEIKGQKLYVGRAQKK-HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 351
Query: 112 LKEAFAPFGEISNCRIVRDPQTL------------------------------------- 134
L+E F+PFG I++ +++RD T
Sbjct: 352 LRELFSPFGTITSAKVMRDTVTTGETSESEKEKEKESNKENEKEGEEKTEEKPKESEEEP 411
Query: 135 ---------KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
KSKG+ FV F EA A+T MN + + + + + RK
Sbjct: 412 KKTEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 461
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 127/267 (47%), Gaps = 28/267 (10%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
++LYVG+LD SV E L LF+Q+ PV +V R+ + YA++ F + A+ A+ +
Sbjct: 59 SSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAMES 118
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N ++ +++ ++ P S ++F+ +L I+ + L E F+ FG I +C
Sbjct: 119 LNYAPIRDRPIRIMLSN---RDPSTRLSGKGNVFIKNLDASIDNKALYETFSSFGTILSC 175
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ D +SKGY FV F K+ A+ AI +NG L + + R+ +R R
Sbjct: 176 KVAMD-VVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRR-----QDRAR 229
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
S + P+ VY K++ ++ + K F +G I V K+
Sbjct: 230 SES------------GAVPSFTNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGN 277
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDI 267
+ + FV F + E A A+E ++ +
Sbjct: 278 SRSFGFVNFVSPEAAAVAVEKMNGISL 304
Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/272 (23%), Positives = 125/272 (45%), Gaps = 24/272 (8%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVI-----REPGNDPYAFLEFVHHTVAATAL 63
+++ NLD S+ + L FS G + CKV R G Y F++F A A+
Sbjct: 147 NVFIKNLDASIDNKALYETFSSFGTILSCKVAMDVVGRSKG---YGFVQFEKEETAQAAI 203
Query: 64 AAMNKRVFLEKEMKVNWASSPGNQPKQDTS---NHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N + +K++ V ++ + ++ + +++V +L EI LK+ F +G
Sbjct: 204 DKLNGMLLNDKQVFVGHFVRRQDRARSESGAVPSFTNVYVKNLPKEITDDELKKTFGKYG 263
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT 180
+IS+ +++D Q+ S+ + FV+FV A A+ MNG LG + + +K
Sbjct: 264 DISSAVVMKD-QSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKS-DRE 321
Query: 181 NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK 240
E +R+ + F+++ +Y +N+E + ++FS +G + +V
Sbjct: 322 EELRRKFEQERISRFEKL------QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMM 375
Query: 241 -----EKGYAFVKFTTKETATHAIESIHNTDI 267
+G+ FV ++ E A A++ ++ I
Sbjct: 376 NSQGLSRGFGFVAYSNPEEALLAMKEMNGKMI 407
Score = 74.7 bits (182), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 50/187 (26%), Positives = 82/187 (43%), Gaps = 35/187 (18%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL P + L + F + N R+ RD T +S GYA+V+F +A A+ ++
Sbjct: 61 LYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRD-LTHRSLGYAYVNFANPEDASRAMESL 119
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N + R IR S R P + + V+
Sbjct: 120 NYAPIRDRPIRIMLSNRDPSTRLSGK-----------------------GNVFIKNLDAS 156
Query: 218 LNEELVSKVFSPFGTIVDIRVF-----KEKGYAFVKFTTKETATHAIESIHNTDIN---- 268
++ + + + FS FGTI+ +V + KGY FV+F +ETA AI+ ++ +N
Sbjct: 157 IDNKALYETFSSFGTILSCKVAMDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQV 216
Query: 269 --GHTVK 273
GH V+
Sbjct: 217 FVGHFVR 223
Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/183 (25%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGND-PYAFLEFVHHTVAATALAA 65
T +YV NL +T++ L F + G + V+++ GN + F+ FV AA A+
Sbjct: 239 TNVYVKNLPKEITDDELKKTFGKYGDISSAVVMKDQSGNSRSFGFVNFVSPEAAAVAVEK 298
Query: 66 MNKRVFLEKEMKVNWASSPGNQPK-------QDTSNHY------HIFVGDLSPEIETQTL 112
MN E + V A ++ + Q+ + + ++++ +L + + L
Sbjct: 299 MNGISLGEDVLYVGRAQKKSDREEELRRKFEQERISRFEKLQGSNLYLKNLDDSVNDEKL 358
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
KE F+ +G +++C+++ + Q L S+G+ FV++ EA A+ MNG+ +G + + +
Sbjct: 359 KEMFSEYGNVTSCKVMMNSQGL-SRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALA 417
Query: 173 TRK 175
RK
Sbjct: 418 QRK 420
Score = 40.4 bits (93), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 41/78 (52%), Gaps = 2/78 (2%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVI--REPGNDPYAFLEFVHHTVAATAL 63
Q + LY+ NLD SV +E L +FS+ G V CKV+ + + + F+ + + A A+
Sbjct: 340 QGSNLYLKNLDDSVNDEKLKEMFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 399
Query: 64 AAMNKRVFLEKEMKVNWA 81
MN ++ K + V A
Sbjct: 400 KEMNGKMIGRKPLYVALA 417
Score = 39.7 bits (91), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/76 (25%), Positives = 37/76 (48%), Gaps = 5/76 (6%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK-----GYAFVKFTTKETATHAIE 260
N ++Y G +NE + +F+ + ++RV ++ GYA+V F E A+ A+E
Sbjct: 58 NSSLYVGDLDPSVNESHLLDLFNQVAPVHNLRVCRDLTHRSLGYAYVNFANPEDASRAME 117
Query: 261 SIHNTDINGHTVKCFW 276
S++ I ++
Sbjct: 118 SLNYAPIRDRPIRIML 133
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 31/278 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAA 65
+LYVG LD SVTE +L LFS IG V +V R+ + YA++ + + AL
Sbjct: 53 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 112
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + K ++ W+ P + ++F+ +L I+ + L + FA FG I +C
Sbjct: 113 LNYTLIKGKPCRIMWSQ---RDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAFGNILSC 169
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ +D + SKGY FV + A NAI +NG L + + K + R
Sbjct: 170 KVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK-------KDR 221
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
Q+ F+E+ +++ TN VY +++ +E K+F FG I + ++
Sbjct: 222 QSK------FEEM--KANFTN--VYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGK 271
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
+G+ FV F+T ++A A++ +++ +I G K + G+
Sbjct: 272 SRGFGFVNFSTHDSAQAAVDEMNDKEIKGQ--KLYVGR 307
Score = 85.5 bits (210), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/237 (22%), Positives = 114/237 (48%), Gaps = 13/237 (5%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFVHHTVAATALAAMN 67
+++ NLD ++ + L F+ G + CKV ++ GN Y F+ + A A+ +N
Sbjct: 142 VFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHVN 201
Query: 68 KRVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V S ++ ++ +N ++++ ++ E+ + ++ F FGEI++
Sbjct: 202 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNIDQEVTDEEFRKMFEKFGEITS 261
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ RD Q KS+G+ FV+F A+ A+ MN + + + + + +K +
Sbjct: 262 ATLSRD-QEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKK-------HE 313
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
R+ K + S +Y D+++E + ++FSPFGTI +V ++
Sbjct: 314 REEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEKLRELFSPFGTITSAKVMRD 370
Score = 80.1 bits (196), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 28/203 (13%)
Query: 75 EMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL 134
E+ ++SP P + + ++VG+L P + L E F+ G++++ R+ RD T
Sbjct: 31 EVTAVESASPSATPSANQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTR 90
Query: 135 KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
+S GYA+V++ A+ E A+ +N + + R WS R P + KT
Sbjct: 91 RSLGYAYVNYNNTADGERALEDLNYTLIKGKPCRIMWSQRDP-----------ALRKT-- 137
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFVKF 249
V+ ++ + + F+ FG I+ +V ++ KGY FV +
Sbjct: 138 ----------GQGNVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHY 187
Query: 250 TTKETATHAIESIHNTDINGHTV 272
T E A +AI+ ++ +N V
Sbjct: 188 ETAEAANNAIKHVNGMLLNDKKV 210
Score = 63.9 bits (154), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/228 (21%), Positives = 92/228 (40%), Gaps = 61/228 (26%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDPYAFLEFVHHTVAATALAA 65
T +Y+ N+D VT+E +F + G + + R E + + F+ F H A A+
Sbjct: 233 TNVYIKNIDQEVTDEEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHDSAQAAVDE 292
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHY--------------HIFVGDLSPEIETQT 111
MN + +++ V A ++ +++ Y +++V +L+ +++ +
Sbjct: 293 MNDKEIKGQKLYVGRAQKK-HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDVDDEK 351
Query: 112 LKEAFAPFGEISNCRIVRDPQTL------------------------------------- 134
L+E F+PFG I++ +++RD T
Sbjct: 352 LRELFSPFGTITSAKVMRDTVTAGETSESEKEKESNKENEKEGEEKTEEKPKESEEEAKK 411
Query: 135 -------KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
KSKG+ FV F EA A+T MN + + + + + RK
Sbjct: 412 TEKKILGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 459
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATH 257
P + ++Y G + E ++ ++FS G + IRV ++ GYA+V +
Sbjct: 49 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 108
Query: 258 AIESIHNTDINGHTVKCFW 276
A+E ++ T I G + W
Sbjct: 109 ALEDLNYTLIKGKPCRIMW 127
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 78/284 (27%), Positives = 140/284 (49%), Gaps = 33/284 (11%)
Query: 5 SQP--TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVA 59
SQP +LYVG LD SVTE +L LFS IG V +V R+ + YA++ + +
Sbjct: 43 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADG 102
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
AL +N + K ++ W+ P + ++F+ +L I+ + L + FA F
Sbjct: 103 ERALEDLNYTLIKGKPCRIMWSQ---RDPALRKTGQGNVFIKNLDAAIDNKALHDTFAAF 159
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G I +C++ +D + SKGY FV + A NAI +NG L + + K
Sbjct: 160 GNILSCKVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK---- 214
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ RQ+ F+E+ +++ TN VY ++++EE ++F FG I +
Sbjct: 215 ---KDRQSK------FEEM--KANFTN--VYIKNLDQEISEEEFRQMFEKFGEITSATLS 261
Query: 240 KE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
++ +G+ FV ++T ++A A++ +++ ++ G K + G+
Sbjct: 262 RDQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQ--KLYVGR 303
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 114/238 (47%), Gaps = 13/238 (5%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFVHHTVAATALAAM 66
+++ NLD ++ + L F+ G + CKV ++ GN Y F+ + A A+ +
Sbjct: 137 NVFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 196
Query: 67 NKRVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS 123
N + +K++ V S ++ ++ +N ++++ +L EI + ++ F FGEI+
Sbjct: 197 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDQEISEEEFRQMFEKFGEIT 256
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNER 183
+ + RD Q KS+G+ FV++ A+ A+ MN + + + + + +K
Sbjct: 257 SATLSRD-QEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKK-------H 308
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
+R+ K + S +Y D+++E + ++F+P+GTI +V ++
Sbjct: 309 EREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLREMFAPYGTITSAKVMRD 366
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 46/234 (19%), Positives = 91/234 (38%), Gaps = 67/234 (28%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDPYAFLEFVHHTVAATALAA 65
T +Y+ NLD ++EE +F + G + + R E + + F+ + H A A+
Sbjct: 229 TNVYIKNLDQEISEEEFRQMFEKFGEITSATLSRDQEGKSRGFGFVNYSTHDSAQAAVDE 288
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHY--------------HIFVGDLSPEIETQT 111
MN + +++ V A ++ +++ Y +++V +L+ +I+ +
Sbjct: 289 MNDKEVKGQKLYVGRAQKK-HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 347
Query: 112 LKEAFAPFGEISNCRIVRDPQTLK------------------------------------ 135
L+E FAP+G I++ +++RD +
Sbjct: 348 LREMFAPYGTITSAKVMRDTNIERTQTPDSDKEKKEESKEEKPEAAEKTEEAAKESGDDQ 407
Query: 136 --------------SKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
SKG+ FV F EA A+T MN + + + + + RK
Sbjct: 408 DKENKKSDKKVLGKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRK 461
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 110 bits (276), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 77/278 (27%), Positives = 136/278 (48%), Gaps = 31/278 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAA 65
+LYVG LD SVTE +L LFS IG V +V R+ + YA++ + + AL
Sbjct: 55 SLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGERALED 114
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + K ++ W+ P + ++F+ +L I+ + L + FA FG I +C
Sbjct: 115 LNYTLIKGKPCRIMWSQ---RDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAFGNILSC 171
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ +D + SKGY FV + A NAI +NG L + + K + R
Sbjct: 172 KVAQD-EFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK-------KDR 223
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
Q+ F+E+ +++ TN VY +++++ K+F FG I + ++
Sbjct: 224 QSK------FEEM--KANFTN--VYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGK 273
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
+G+ FV F+T E+A A+E +++ +I + K + G+
Sbjct: 274 SRGFGFVNFSTHESAQAAVEEMNDKEI--RSQKLYVGR 309
Score = 86.3 bits (212), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 114/238 (47%), Gaps = 13/238 (5%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFVHHTVAATALAAM 66
+++ NLD ++ + L F+ G + CKV ++ GN Y F+ + A A+ +
Sbjct: 143 NVFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGNSKGYGFVHYETAEAANNAIKHV 202
Query: 67 NKRVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS 123
N + +K++ V S ++ ++ +N ++++ +L EI+ ++ F FGEI+
Sbjct: 203 NGMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNVYIKNLDSEIDDDEFRKMFEKFGEIT 262
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNER 183
+ + RD Q KS+G+ FV+F A+ A+ MN + + S+ + + +K
Sbjct: 263 SATLSRD-QEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKK-------H 314
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
+R+ K + S +Y D+++E + ++F P+GTI +V ++
Sbjct: 315 EREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEKLRELFGPYGTITSAKVMRD 372
Score = 58.2 bits (139), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/161 (21%), Positives = 75/161 (46%), Gaps = 17/161 (10%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDPYAFLEFVHHTVAATALAA 65
T +Y+ NLD + ++ +F + G + + R E + + F+ F H A A+
Sbjct: 235 TNVYIKNLDSEIDDDEFRKMFEKFGEITSATLSRDQEGKSRGFGFVNFSTHESAQAAVEE 294
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHY--------------HIFVGDLSPEIETQT 111
MN + +++ V A ++ +++ Y +++V +L+ +I+ +
Sbjct: 295 MNDKEIRSQKLYVGRAQKK-HEREEELRKQYEAARLEKASKYQGVNLYVKNLTDDIDDEK 353
Query: 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152
L+E F P+G I++ +++RD + + K+A+ EN
Sbjct: 354 LRELFGPYGTITSAKVMRDTNVERDQSPDSAGKEKEADKEN 394
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 37/79 (46%), Gaps = 6/79 (7%)
Query: 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATH 257
P + ++Y G + E ++ ++FS G + IRV ++ GYA+V +
Sbjct: 51 PHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNNTADGER 110
Query: 258 AIESIHNTDINGHTVKCFW 276
A+E ++ T I G + W
Sbjct: 111 ALEDLNYTLIKGKPCRIMW 129
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 82/272 (30%), Positives = 130/272 (47%), Gaps = 23/272 (8%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAA 60
E+ +LYVG+LD SV+E L +FS IG V +V R+ YA++ F H A
Sbjct: 31 ETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHDAAK 90
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
TA+ +N K ++ W+ + K+ N IF+ +L P+I+ + L + F+ FG
Sbjct: 91 TAIEKLNFTPIKGKLCRIMWSQRDPSLRKKGAGN---IFIKNLHPDIDNKALYDTFSVFG 147
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT 180
I + ++ D +T KSKG+ +V F + A AI A+NG L + I P ++
Sbjct: 148 NILSSKVATD-ETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVG------PHLS 200
Query: 181 NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV-- 238
+ + F VY ++ T T K+ EELV+K F ++V R
Sbjct: 201 KKERESKFEEMKANFTNVYIKNINTETT------DKEF-EELVAK-FGKTDSVVLERTPE 252
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGH 270
+ KG+ FV F E A +E ++NT+ G
Sbjct: 253 GENKGFGFVNFVNHEDAVKCVEELNNTEFKGQ 284
Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 87/192 (45%), Gaps = 28/192 (14%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
N+ Q + ++VGDL P + L + F+P G +S+ R+ RD T S GYA+V+F
Sbjct: 25 NEENQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFN 84
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPT 205
A+ AI +N + + R WS R P RK+ +
Sbjct: 85 DHDAAKTAIEKLNFTPIKGKLCRIMWSQRDPSL----RKKGAGN---------------- 124
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF-----KEKGYAFVKFTTKETATHAIE 260
++ D++ + + FS FG I+ +V K KG+ +V F E+A+ AI+
Sbjct: 125 ---IFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAID 181
Query: 261 SIHNTDINGHTV 272
+++ +NG +
Sbjct: 182 ALNGMLLNGQEI 193
Score = 71.2 bits (173), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 57/261 (21%), Positives = 116/261 (44%), Gaps = 18/261 (6%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKV-IREPGNDP-YAFLEFVHHTVAATALAAM 66
+++ NL + + L FS G + KV E G + ++ F A+ A+ A+
Sbjct: 124 NIFIKNLHPDIDNKALYDTFSVFGNILSSKVATDETGKSKGFGYVHFEEDESASEAIDAL 183
Query: 67 NKRVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS 123
N + +E+ V S + ++ +N ++++ +++ E + +E A FG+
Sbjct: 184 NGMLLNGQEIYVGPHLSKKERESKFEEMKANFTNVYIKNINTETTDKEFEELVAKFGKTD 243
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNER 183
+ + R P+ ++KG+ FV+FV +A + +N + + N + +K
Sbjct: 244 SVVLERTPEG-ENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKK-------Y 295
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
+RQ K + + ++ ++++ + + F+P+GTI +V
Sbjct: 296 ERQQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKKLEEEFAPYGTITSAKVMTTEN 355
Query: 240 -KEKGYAFVKFTTKETATHAI 259
K KG+ FV F+T E AT AI
Sbjct: 356 GKSKGFGFVCFSTPEEATKAI 376
Score = 68.9 bits (167), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 47/184 (25%), Positives = 85/184 (46%), Gaps = 18/184 (9%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAA 65
T +Y+ N++ T++ L ++ G + R P N + F+ FV+H A +
Sbjct: 216 TNVYIKNINTETTDKEFEELVAKFGKTDSVVLERTPEGENKGFGFVNFVNHEDAVKCVEE 275
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHY--------------HIFVGDLSPEIETQT 111
+N F + + VN A + +Q+ Y ++F+ +L I+ +
Sbjct: 276 LNNTEFKGQPLYVNRAQKKYER-QQELKKQYEATRMEKMAKYQGINLFIKNLDDSIDDKK 334
Query: 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171
L+E FAP+G I++ +++ + KSKG+ FV F EA AIT N Q + + +
Sbjct: 335 LEEEFAPYGTITSAKVMT-TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAI 393
Query: 172 STRK 175
+ RK
Sbjct: 394 AQRK 397
Score = 52.0 bits (123), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKE 253
NQS + ++Y G ++E + +FSP G + IRV ++ GYA+V F +
Sbjct: 28 NQSETVSASLYVGDLDPSVSEAHLYDIFSPIGAVSSIRVCRDAITKTSLGYAYVNFNDHD 87
Query: 254 TATHAIESIHNTDINGHTVKCFW 276
A AIE ++ T I G + W
Sbjct: 88 AAKTAIEKLNFTPIKGKLCRIMW 110
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 75/273 (27%), Positives = 128/273 (46%), Gaps = 29/273 (10%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALA 64
+LYVG LD SVTE +L LFSQIG V +V R+ + YA++ + AL
Sbjct: 60 ASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALE 119
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N + + ++ W+ P + +IF+ +L I+ + L + FA FG I +
Sbjct: 120 ELNYTLIKGRPCRIMWSQ---RDPALRKTGAGNIFIKNLDAAIDNKALHDTFAAFGNILS 176
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
C++ +D SKGY FV + A AI +NG L + + K +
Sbjct: 177 CKVAQDEHG-NSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPK-------KD 228
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
RQ+ F+E+ +++ TN VY ++ +E ++F+ FG + + ++
Sbjct: 229 RQSK------FEEM--KANFTN--VYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEG 278
Query: 242 --KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
+G+ FV FTT E A A++ ++ D G +
Sbjct: 279 KSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDL 311
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/243 (24%), Positives = 118/243 (48%), Gaps = 23/243 (9%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFVHHTVAATALAAM 66
+++ NLD ++ + L F+ G + CKV + E GN Y F+ + A+ A+ +
Sbjct: 149 NIFIKNLDAAIDNKALHDTFAAFGNILSCKVAQDEHGNSKGYGFVHYETDEAASQAIKHV 208
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQD--------TSNHYHIFVGDLSPEIETQTLKEAFAP 118
N + EK++ V + PK+D +N +++V +++ E+ + +E FA
Sbjct: 209 NGMLLNEKKVYVGH-----HIPKKDRQSKFEEMKANFTNVYVKNINNEVTDEEFRELFAK 263
Query: 119 FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPA 178
FGE+++ + RD Q KS+G+ FV+F A A+ +NG+ + + + +K
Sbjct: 264 FGEVTSSSLARD-QEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKK--- 319
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+ER+ + + E N+ N +Y G D++++ + +FS +G I +V
Sbjct: 320 --HEREEELRKSYEAARLEKANKYQGVN--LYIKNLGDDVDDDKLRAMFSEYGPITSAKV 375
Query: 239 FKE 241
++
Sbjct: 376 MRD 378
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/223 (20%), Positives = 92/223 (41%), Gaps = 55/223 (24%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDPYAFLEFVHHTVAATALAA 65
T +YV N++ VT+E LF++ G V + R E + + F+ F H AA A+
Sbjct: 241 TNVYVKNINNEVTDEEFRELFAKFGEVTSSSLARDQEGKSRGFGFVNFTTHEAAAQAVDE 300
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQ----------DTSNHY---HIFVGDLSPEIETQTL 112
+N + F +++ V A + ++ + +N Y ++++ +L +++ L
Sbjct: 301 LNGKDFRGQDLYVGRAQKKHEREEELRKSYEAARLEKANKYQGVNLYIKNLGDDVDDDKL 360
Query: 113 KEAFAPFGEISNCRIVRDP----------------------------------------Q 132
+ F+ +G I++ +++RD +
Sbjct: 361 RAMFSEYGPITSAKVMRDSLIEGSEEKDEKDKENKKEGETKEEEQNEGSEKKTEKKGDRK 420
Query: 133 TLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
KSKG+ FV F +A A+T MN + + + + + RK
Sbjct: 421 LGKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRK 463
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHA 258
+ ++Y G + E ++ ++FS G++ IRV ++ GYA+V + T A
Sbjct: 58 ASASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKA 117
Query: 259 IESIHNTDINGHTVKCFW 276
+E ++ T I G + W
Sbjct: 118 LEELNYTLIKGRPCRIMW 135
Score = 36.6 bits (83), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
Q LY+ NL V ++ L A+FS+ GP+ KV+R+
Sbjct: 342 QGVNLYIKNLGDDVDDDKLRAMFSEYGPITSAKVMRD 378
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 109 bits (272), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 76/275 (27%), Positives = 127/275 (46%), Gaps = 29/275 (10%)
Query: 1 MCDESQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHT 57
+ D++ P ++LY G+LD VTE L LF + V +V R+ YA++ F +
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 58 VAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117
A A+ A+N ++ +++ ++ P S +IF+ +L I+ + L E F+
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSN---RDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 118 PFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
FG I +C++ D T +SKGY FV F K+ A+ AI +NG + + + R+
Sbjct: 158 SFGTILSCKVAMD-VTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRR-- 214
Query: 178 AMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237
ER R DE N +P VY K++ E+ + K F FG I
Sbjct: 215 ---QERAR----------DE--NTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAV 259
Query: 238 VFKEKG-----YAFVKFTTKETATHAIESIHNTDI 267
V +++ + FV F E A A+E ++ +
Sbjct: 260 VMRDQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294
Score = 70.9 bits (172), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 97/194 (50%), Gaps = 24/194 (12%)
Query: 3 DESQPT----TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFVHH 56
DE+ PT +YV NL + E+ L F + G + V+R+ GN + F+ F
Sbjct: 220 DENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECT 279
Query: 57 TVAATALAAMN---------------KRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVG 101
AA+A+ MN K+ E+E++ + N + + S ++++
Sbjct: 280 EAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERIN--RFEKSQGANLYLK 337
Query: 102 DLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW 161
+L ++ + LKE F+ +G +++ +++ +PQ + S+G+ FV++ EA A++ MNG+
Sbjct: 338 NLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKM 396
Query: 162 LGSRSIRTNWSTRK 175
+G + + + RK
Sbjct: 397 IGRKPLYIALAQRK 410
Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 49/199 (24%), Positives = 85/199 (42%), Gaps = 35/199 (17%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++ GDL P++ L + F + + R+ RD Q +S GYA+++F +A A+ A+
Sbjct: 51 LYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRD-QNRRSLGYAYINFSNPNDAYRAMEAL 109
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N L R IR S R P + + ++
Sbjct: 110 NYTPLFDRPIRIMLSNRDPSTRLSGK-----------------------GNIFIKNLDAS 146
Query: 218 LNEELVSKVFSPFGTIVDIRVF-----KEKGYAFVKFTTKETATHAIESIHNTDIN---- 268
++ + + + FS FGTI+ +V + KGY FV+F +E+A AI+ ++ +N
Sbjct: 147 IDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQV 206
Query: 269 --GHTVKCFWGKESENNST 285
GH ++ EN T
Sbjct: 207 FVGHFIRRQERARDENTPT 225
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 7/95 (7%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAA 60
++SQ LY+ NLD SV +E L +FS+ G V KV+ P + + F+ + + A
Sbjct: 327 EKSQGANLYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQGMSRGFGFVAYSNPEEAL 386
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
AL+ MN ++ K + + A Q K+D H
Sbjct: 387 RALSEMNGKMIGRKPLYIALA-----QRKEDRRAH 416
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 108 bits (270), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 76/278 (27%), Positives = 132/278 (47%), Gaps = 31/278 (11%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAATALAA 65
+LYVG LD SVTE +L LF+ IGPV +V R+ YA++ F + AL
Sbjct: 81 SLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEKALDE 140
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + + ++ W+ + K T N +F+ +L P I+ + L + F+ FG+I +C
Sbjct: 141 LNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGKILSC 197
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ D + +KGY FV F A AI +NG L + + + R+R
Sbjct: 198 KVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSR-------RER 249
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
Q S + + +++ TN VY ++ E+ S +F FG I + + K+
Sbjct: 250 Q-SKVEAL-------KANFTN--VYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDK 299
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
+G+ FV + E A A++ +++ + G K + G+
Sbjct: 300 PRGFGFVNYANHECAQKAVDELNDKEYKGK--KLYVGR 335
Score = 88.2 bits (217), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 91/183 (49%), Gaps = 16/183 (8%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +Y+ NLD +TE+ LF Q G + ++++ + P + F+ + +H A A+
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 66 MNKRVFLEKEMKVNWASSPG----------NQPKQDTSNHY---HIFVGDLSPEIETQTL 112
+N + + K++ V A Q K + N Y ++F+ +L E++ + L
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
K F+ FG I++ +I+ D Q KSKG+ FV + EA A+T MN + L + + +
Sbjct: 381 KAEFSAFGTITSAKIMTDEQG-KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 173 TRK 175
RK
Sbjct: 440 QRK 442
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 70/282 (24%), Positives = 128/282 (45%), Gaps = 18/282 (6%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKV-IREPGN-DPYAFLEFVHHTVAATALAAMN 67
+++ NLD ++ + L FS G + CKV + E GN Y F+ F A A+ +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 68 KRVFLEKEMKV-NWASSPGNQPKQDT--SNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V + S Q K + +N ++++ +L EI Q + F FGEI++
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+V+D Q K +G+ FV++ A+ A+ +N + + + + +K RK
Sbjct: 290 LSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRK 348
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----- 239
R E N+ N ++ ++++E + FS FGTI ++
Sbjct: 349 RYEQMKL-----EKMNKYQGVN--LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQG 401
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281
K KG+ FV +TT E A A+ ++ + G + + E
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKE 443
Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETA 255
++PT+ ++Y G + E ++ ++F+ G + IRV ++ GYA+V F E
Sbjct: 75 TAPTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDG 134
Query: 256 THAIESIHNTDINGHTVKCFW 276
A++ ++ T I G + W
Sbjct: 135 EKALDELNYTLIKGRPCRIMW 155
>sp|Q6AYL5|SF3B4_RAT Splicing factor 3B subunit 4 OS=Rattus norvegicus GN=Sf3b4 PE=2
SV=1
Length = 424
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHT 57
+ + +Q T+YVG LD V+E LL LF Q GPV + ++ + Y F+EF+
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 58 VAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117
A A+ MN K ++VN AS+ ++ +IF+G+L PEI+ + L + F+
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAH----NKNLDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 118 PFGEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
FG I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 80 WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGY 139
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 1 MAAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY 56
Query: 140 AFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
FV F+ + +A+ AI MN L + IR N + ++H K +
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVN--------------KASAHNKNLD----- 97
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV-------DIRVFKEKGYAFVKFTTK 252
++ G +++E+L+ FS FG I+ D KGYAF+ F +
Sbjct: 98 -----VGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 253 ETATHAIESI 262
+ + AIE++
Sbjct: 153 DASDAAIEAM 162
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAI 259
+ TVY GG + ++E L+ ++F G +V+ + K++ GY FV+F ++E A +AI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 260 ESIHNTDINGHTVKCFWGKESENNSTL 286
+ ++ + G ++ K S +N L
Sbjct: 72 KIMNMIKLYGKPIRV--NKASAHNKNL 96
>sp|Q8QZY9|SF3B4_MOUSE Splicing factor 3B subunit 4 OS=Mus musculus GN=Sf3b4 PE=2 SV=1
Length = 424
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHT 57
+ + +Q T+YVG LD V+E LL LF Q GPV + ++ + Y F+EF+
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 58 VAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117
A A+ MN K ++VN AS+ ++ +IF+G+L PEI+ + L + F+
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAH----NKNLDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 118 PFGEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
FG I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 80 WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGY 139
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 1 MAAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY 56
Query: 140 AFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
FV F+ + +A+ AI MN L + IR N + ++H K +
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVN--------------KASAHNKNLD----- 97
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV-------DIRVFKEKGYAFVKFTTK 252
++ G +++E+L+ FS FG I+ D KGYAF+ F +
Sbjct: 98 -----VGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 253 ETATHAIESI 262
+ + AIE++
Sbjct: 153 DASDAAIEAM 162
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAI 259
+ TVY GG + ++E L+ ++F G +V+ + K++ GY FV+F ++E A +AI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 260 ESIHNTDINGHTVKCFWGKESENNSTL 286
+ ++ + G ++ K S +N L
Sbjct: 72 KIMNMIKLYGKPIRV--NKASAHNKNL 96
>sp|Q15427|SF3B4_HUMAN Splicing factor 3B subunit 4 OS=Homo sapiens GN=SF3B4 PE=1 SV=1
Length = 424
Score = 108 bits (270), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 65/179 (36%), Positives = 101/179 (56%), Gaps = 8/179 (4%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHT 57
+ + +Q T+YVG LD V+E LL LF Q GPV + ++ + Y F+EF+
Sbjct: 6 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEE 65
Query: 58 VAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117
A A+ MN K ++VN AS+ ++ +IF+G+L PEI+ + L + F+
Sbjct: 66 DADYAIKIMNMIKLYGKPIRVNKASAH----NKNLDVGANIFIGNLDPEIDEKLLYDTFS 121
Query: 118 PFGEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
FG I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 122 AFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 48/190 (25%), Positives = 84/190 (44%), Gaps = 35/190 (18%)
Query: 80 WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGY 139
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 1 MAAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGY 56
Query: 140 AFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
FV F+ + +A+ AI MN L + IR N + ++H K +
Sbjct: 57 GFVEFLSEEDADYAIKIMNMIKLYGKPIRVN--------------KASAHNKNLD----- 97
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV-------DIRVFKEKGYAFVKFTTK 252
++ G +++E+L+ FS FG I+ D KGYAF+ F +
Sbjct: 98 -----VGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASF 152
Query: 253 ETATHAIESI 262
+ + AIE++
Sbjct: 153 DASDAAIEAM 162
Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/87 (28%), Positives = 48/87 (55%), Gaps = 8/87 (9%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAI 259
+ TVY GG + ++E L+ ++F G +V+ + K++ GY FV+F ++E A +AI
Sbjct: 12 DATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAI 71
Query: 260 ESIHNTDINGHTVKCFWGKESENNSTL 286
+ ++ + G ++ K S +N L
Sbjct: 72 KIMNMIKLYGKPIRV--NKASAHNKNL 96
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 108 bits (269), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 79/284 (27%), Positives = 137/284 (48%), Gaps = 33/284 (11%)
Query: 5 SQP--TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVA 59
SQP +LYVG LD SVTE +L LFS IG V +V R+ + YA++ +
Sbjct: 37 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHG 96
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
AL +N + K ++ W+ P + ++F+ +L I+ + L + FA F
Sbjct: 97 ERALDELNYTLIKGKPCRIMWSQ---RDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G I +C++ +D + SKGY FV + A NAI +NG L + + K
Sbjct: 154 GNILSCKVAQDEFGV-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK---- 208
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ RQ+ F+E+ +++ TN +Y ++ +E K+F FG I +
Sbjct: 209 ---KDRQSK------FEEM--KANFTN--IYIKNIDPEVEDEEFRKLFEKFGEITSATLS 255
Query: 240 KE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
++ +G+ FV F+T E+A A+E +++ ++ + K + G+
Sbjct: 256 RDSEGKSRGFGFVNFSTHESAQAAVEEMNDKEV--RSQKLYVGR 297
Score = 85.1 bits (209), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/252 (22%), Positives = 122/252 (48%), Gaps = 15/252 (5%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GNDPYAFLEFVHHTVAATALAAMN 67
+++ NLD ++ + L F+ G + CKV ++ + Y F+ + A A+ +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 68 KRVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V S ++ ++ +N +I++ ++ PE+E + ++ F FGEI++
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITS 251
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ RD + KS+G+ FV+F A+ A+ MN + + S+ + + +K +
Sbjct: 252 ATLSRDSEG-KSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKK-------HE 303
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGY 244
R+ K + S +Y D++++ + ++F P+GTI +V ++
Sbjct: 304 REEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDT-- 361
Query: 245 AFVKFTTKETAT 256
A V+ T E+ T
Sbjct: 362 APVETATPESET 373
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/233 (20%), Positives = 92/233 (39%), Gaps = 65/233 (27%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDPYAFLEFVHHTVAATALAA 65
T +Y+ N+D V +E LF + G + + R E + + F+ F H A A+
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEE 282
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQ----------DTSNHY---HIFVGDLSPEIETQTL 112
MN + +++ V A + ++ + ++ Y +++V +L+ +++ L
Sbjct: 283 MNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKL 342
Query: 113 KEAFAPFGEISNCRIVRD--------PQTL------------------------------ 134
+E F P+G I++ +++RD P++
Sbjct: 343 RELFGPYGTITSAKVMRDTAPVETATPESETKESANKENEKAAEGEKEPAAEEKEKEEKK 402
Query: 135 ------------KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
KSKG+ FV F EA A+T MN + + + + + RK
Sbjct: 403 EAEQKPEKKPLGKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 34/290 (11%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALA 64
+LYVG LD SVTE +L +F+ IGPV +V R+ + YA++ +++ AL
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N + + ++ W+ P + +IF+ +L I+ + L + FA FG+I +
Sbjct: 106 HLNYSLIKGQSCRIMWSQ---RDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
C++ D + KS+G+AFV + A+ AI A+NG L + + K
Sbjct: 163 CKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGK--------- 212
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ +E+ Q + VY ++ + + PFG + + + ++
Sbjct: 213 ----KERLSKVEELRAQFT----NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKG 264
Query: 242 --KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK---ESENNSTL 286
KG+ FV + E+A A++ ++ ++NG K + G+ +SE + L
Sbjct: 265 VSKGFGFVNYENHESARKAVDELNEKEVNGK--KLYAGRAQTKSEREAEL 312
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPG-NDPYAFLEFVHHTVAATA 62
+Q T +Y+ N+D+ VT+ L GP + R E G + + F+ + +H A A
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 63 LAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNH-------------YHIFVGDLSPEIET 109
+ +N++ K++ A + + + +H +++V +L E +
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 110 QTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169
L+ F FG I++ +++RD + S+G+ FV + EA A++ MNG+ +G++ +
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGV-SRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYV 402
Query: 170 NWSTRK 175
+ RK
Sbjct: 403 ALAQRK 408
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHA 258
+ ++Y G + E ++ ++F+ G + IRV ++ GYA+V + A
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 259 IESIHNTDINGHTVKCFW 276
+E ++ + I G + + W
Sbjct: 104 LEHLNYSLIKGQSCRIMW 121
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 107 bits (268), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/290 (24%), Positives = 135/290 (46%), Gaps = 34/290 (11%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALA 64
+LYVG LD SVTE +L +F+ IGPV +V R+ + YA++ +++ AL
Sbjct: 46 ASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALE 105
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N + + ++ W+ P + +IF+ +L I+ + L + FA FG+I +
Sbjct: 106 HLNYSLIKGQSCRIMWSQ---RDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILS 162
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
C++ D + KS+G+AFV + A+ AI A+NG L + + K
Sbjct: 163 CKVGTD-ENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGK--------- 212
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
+ +E+ Q + VY ++ + + PFG + + + ++
Sbjct: 213 ----KERLSKVEELRAQFT----NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKG 264
Query: 242 --KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK---ESENNSTL 286
KG+ FV + E+A A++ ++ ++NG K + G+ +SE + L
Sbjct: 265 VSKGFGFVNYENHESARKAVDELNEKEVNGK--KLYAGRAQTKSEREAEL 312
Score = 67.0 bits (162), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 44/186 (23%), Positives = 89/186 (47%), Gaps = 16/186 (8%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPG-NDPYAFLEFVHHTVAATA 62
+Q T +Y+ N+D+ VT+ L GP + R E G + + F+ + +H A A
Sbjct: 224 AQFTNVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKA 283
Query: 63 LAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNH-------------YHIFVGDLSPEIET 109
+ +N++ K++ A + + + +H +++V +L E +
Sbjct: 284 VDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDD 343
Query: 110 QTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169
L+ F FG I++ +++RD + S+G+ FV + EA A++ MNG+ +G++ +
Sbjct: 344 DRLRAEFEAFGTITSSKVMRDDSGV-SRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYV 402
Query: 170 NWSTRK 175
+ RK
Sbjct: 403 ALAQRK 408
Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 17/78 (21%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHA 258
+ ++Y G + E ++ ++F+ G + IRV ++ GYA+V + A
Sbjct: 44 VSASLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERA 103
Query: 259 IESIHNTDINGHTVKCFW 276
+E ++ + I G + + W
Sbjct: 104 LEHLNYSLIKGQSCRIMW 121
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 73/284 (25%), Positives = 129/284 (45%), Gaps = 31/284 (10%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVA 59
D+ +LYVG LD SVTE +L +F+ IGPV +V R+ + YA++ F +
Sbjct: 41 DQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAITRRSLGYAYVNFHNQADG 100
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
AL +N E+ ++ W+ P + +I++ +L P I+ + L + F+ F
Sbjct: 101 IRALEELNYSPIKERPCRIMWSQ---RDPALRKTGAGNIYIKNLDPAIDNKALHDTFSAF 157
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G+I +C+I D + S+G+ FV + AE+AI +NG L + + K M
Sbjct: 158 GQILSCKIATD-EFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRM 216
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ +++NS T V+ G ++ E ++ + FG + +
Sbjct: 217 QSFEEQKNSFT-----------------NVFIKNLGTEITEAEFEELVNKFGETSSVHLS 259
Query: 240 -----KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
K G+ FV + + A AI+ + T+ G+ K F G+
Sbjct: 260 TNDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGN--KLFAGR 301
Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/205 (24%), Positives = 91/205 (44%), Gaps = 30/205 (14%)
Query: 73 EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQ 132
E E K + G+ K+D ++ ++VG+L P + L E F P G +++ R+ RD
Sbjct: 25 EGEAKTESSEEKGS--KEDQGDNASLYVGELDPSVTEAMLFEIFNPIGPVTSVRVCRDAI 82
Query: 133 TLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKT 192
T +S GYA+V+F +A+ A+ +N + R R WS R P
Sbjct: 83 TRRSLGYAYVNFHNQADGIRALEELNYSPIKERPCRIMWSQRDP---------------- 126
Query: 193 ITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFV 247
++ N +Y ++ + + FS FG I+ ++ + +G+ FV
Sbjct: 127 -----ALRKTGAGN--IYIKNLDPAIDNKALHDTFSAFGQILSCKIATDEFGNSRGFGFV 179
Query: 248 KFTTKETATHAIESIHNTDINGHTV 272
+ + E+A AI+ ++ +N V
Sbjct: 180 HYESAESAESAIQHVNGMLLNDKKV 204
Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 40/183 (21%), Positives = 81/183 (44%), Gaps = 16/183 (8%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
T +++ NL +TE L ++ G + P + F+++ H VA A+
Sbjct: 227 TNVFIKNLGTEITEAEFEELVNKFGETSSVHLSTNDEGKPTGFGFVDYKEHDVAVKAIDG 286
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQ----------DTSNHY---HIFVGDLSPEIETQTL 112
+++ F ++ A + + + N Y ++++ +L I+ L
Sbjct: 287 LSETEFKGNKLFAGRAKKKYERADELRKQYEASRLEKLNKYQGVNLYIKNLDDTIDDDKL 346
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
+ FAP G I++ +++ D + KSKG+ FV + EA A+T MN + + + + +
Sbjct: 347 RAEFAPHGTITSAKVMVD-EAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLA 405
Query: 173 TRK 175
RK
Sbjct: 406 QRK 408
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 105 bits (261), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 72/273 (26%), Positives = 128/273 (46%), Gaps = 30/273 (10%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAA 65
+LYVG LD SVTE +L LFSQIG V +V R+ + YA++ + AL
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + + ++ W+ P + ++F+ +L I+ + L + FA FG I +C
Sbjct: 122 LNYTLIKGRPCRIMWSQ---RDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ +D + SKGY FV + A AI +NG L + + K + R
Sbjct: 179 KVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPK-------KDR 230
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV------DIRVF 239
Q+ FDE+ +++ TN +Y ++ ++ +F +G + D
Sbjct: 231 QSK------FDEM--KANFTN--IYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETG 280
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K +G+ FV FT+ E A+ A++ ++ + +G +
Sbjct: 281 KSRGFGFVNFTSHEDASKAVQELNEKEFHGQNL 313
Score = 87.4 bits (215), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 115/243 (47%), Gaps = 22/243 (9%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFVHHTVAATALAAM 66
+++ NLDV++ + L F+ G + CKV + E GN Y F+ + A+ A+ +
Sbjct: 150 NVFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHV 209
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQD--------TSNHYHIFVGDLSPEIETQTLKEAFAP 118
N + EK++ V + PK+D +N +I+V +++PE+ + F
Sbjct: 210 NGMLLNEKKVYVGH-----HIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEK 264
Query: 119 FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPA 178
+G++++ + RD +T KS+G+ FV+F +A A+ +N + +++ + +K
Sbjct: 265 YGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKK--- 321
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+R+ K+ S +Y ++++E + ++FS FG I +V
Sbjct: 322 ----HEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKV 377
Query: 239 FKE 241
++
Sbjct: 378 MRD 380
Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 33/139 (23%), Positives = 67/139 (48%), Gaps = 16/139 (11%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDP-YAFLEFVHHTVAATALA 64
T +YV N++ VT++ LF + G V + R E G + F+ F H A+ A+
Sbjct: 242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ 301
Query: 65 AMNKRVFL-------------EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQT 111
+N++ F E+E ++ + Q K ++++ +L E++ +
Sbjct: 302 ELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEK 361
Query: 112 LKEAFAPFGEISNCRIVRD 130
L++ F+ FG I++ +++RD
Sbjct: 362 LRQLFSEFGPITSAKVMRD 380
Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/77 (25%), Positives = 38/77 (49%), Gaps = 6/77 (7%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAI 259
+ ++Y G + E ++ ++FS G++ IRV ++ GYA+V + T A+
Sbjct: 60 SASLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKAL 119
Query: 260 ESIHNTDINGHTVKCFW 276
E ++ T I G + W
Sbjct: 120 EELNYTLIKGRPCRIMW 136
Score = 40.8 bits (94), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 25/42 (59%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP 47
Q LY+ NLD V +E L LFS+ GP+ KV+R+ +P
Sbjct: 344 QGVNLYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRDSITEP 385
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.130 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 150,017,986
Number of Sequences: 539616
Number of extensions: 6297577
Number of successful extensions: 21466
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 702
Number of HSP's successfully gapped in prelim test: 362
Number of HSP's that attempted gapping in prelim test: 16841
Number of HSP's gapped (non-prelim): 3257
length of query: 390
length of database: 191,569,459
effective HSP length: 119
effective length of query: 271
effective length of database: 127,355,155
effective search space: 34513247005
effective search space used: 34513247005
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 62 (28.5 bits)