Query psy2618
Match_columns 390
No_of_seqs 297 out of 2715
Neff 10.4
Searched_HMMs 46136
Date Fri Aug 16 20:47:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2618.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2618hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0148|consensus 100.0 6.2E-50 1.3E-54 324.4 27.0 242 3-285 2-243 (321)
2 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.8E-47 8.3E-52 349.7 33.5 272 5-281 1-350 (352)
3 TIGR01628 PABP-1234 polyadenyl 100.0 5.7E-47 1.2E-51 367.9 35.5 268 6-281 87-365 (562)
4 KOG0117|consensus 100.0 5.7E-45 1.2E-49 315.2 29.8 247 7-286 83-337 (506)
5 TIGR01628 PABP-1234 polyadenyl 100.0 7E-43 1.5E-47 339.3 35.9 248 8-279 1-260 (562)
6 TIGR01648 hnRNP-R-Q heterogene 100.0 4.8E-43 1E-47 328.3 33.3 245 6-283 57-310 (578)
7 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 2.7E-41 5.8E-46 319.8 32.8 269 6-281 1-352 (481)
8 KOG0145|consensus 100.0 1.1E-40 2.5E-45 269.0 23.4 272 4-280 38-358 (360)
9 TIGR01622 SF-CC1 splicing fact 100.0 2.8E-39 6.1E-44 307.4 32.4 278 3-281 85-449 (457)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 4.4E-39 9.6E-44 304.7 31.0 267 8-280 97-480 (481)
11 TIGR01642 U2AF_lg U2 snRNP aux 100.0 4.2E-39 9.1E-44 310.5 30.1 273 4-280 172-502 (509)
12 TIGR01645 half-pint poly-U bin 100.0 2.7E-37 5.9E-42 289.8 32.3 171 5-175 105-284 (612)
13 KOG0127|consensus 100.0 1.2E-36 2.5E-41 269.7 25.6 274 6-280 4-378 (678)
14 KOG0144|consensus 100.0 2.1E-35 4.5E-40 254.8 17.9 274 4-282 31-506 (510)
15 TIGR01659 sex-lethal sex-letha 100.0 6.7E-34 1.4E-38 254.5 20.8 168 3-175 103-275 (346)
16 KOG0123|consensus 100.0 6.3E-33 1.4E-37 249.3 19.1 271 3-282 72-351 (369)
17 TIGR01659 sex-lethal sex-letha 100.0 8.4E-32 1.8E-36 241.0 24.9 168 90-282 102-277 (346)
18 KOG0123|consensus 100.0 3.5E-32 7.7E-37 244.5 21.5 239 8-279 2-245 (369)
19 TIGR01645 half-pint poly-U bin 100.0 2.9E-30 6.3E-35 242.6 21.9 175 93-281 105-285 (612)
20 KOG0147|consensus 100.0 3.7E-31 8E-36 236.2 13.2 279 2-281 174-529 (549)
21 KOG0110|consensus 100.0 7.9E-30 1.7E-34 233.8 18.0 260 3-281 381-694 (725)
22 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 3.4E-29 7.3E-34 230.5 22.0 171 6-176 88-350 (352)
23 TIGR01648 hnRNP-R-Q heterogene 100.0 6.4E-29 1.4E-33 233.4 22.3 223 4-234 135-369 (578)
24 KOG0144|consensus 100.0 2.6E-29 5.6E-34 217.3 12.4 169 93-285 32-211 (510)
25 KOG0124|consensus 100.0 3.1E-28 6.8E-33 206.2 17.4 169 7-175 113-290 (544)
26 KOG0127|consensus 100.0 3.4E-28 7.3E-33 216.2 17.9 258 5-262 115-516 (678)
27 KOG0148|consensus 100.0 6.4E-28 1.4E-32 196.5 17.3 163 7-175 62-238 (321)
28 KOG0117|consensus 100.0 5.7E-27 1.2E-31 203.8 20.3 199 49-283 37-251 (506)
29 TIGR01622 SF-CC1 splicing fact 100.0 1.3E-26 2.9E-31 220.5 23.1 175 92-280 86-266 (457)
30 KOG0131|consensus 99.9 9.1E-27 2E-31 179.0 13.1 171 3-177 5-179 (203)
31 KOG4211|consensus 99.9 8.6E-25 1.9E-29 193.1 27.3 268 5-277 8-355 (510)
32 KOG0145|consensus 99.9 1.3E-26 2.8E-31 187.8 13.7 165 92-281 38-210 (360)
33 KOG0109|consensus 99.9 6.5E-26 1.4E-30 186.7 10.4 148 8-175 3-150 (346)
34 KOG0131|consensus 99.9 3.2E-25 7E-30 170.5 12.6 170 91-284 5-181 (203)
35 KOG1190|consensus 99.9 9.8E-24 2.1E-28 181.7 22.1 273 5-285 26-378 (492)
36 TIGR01642 U2AF_lg U2 snRNP aux 99.9 5.2E-24 1.1E-28 205.6 20.7 170 5-174 293-501 (509)
37 KOG4212|consensus 99.9 4.9E-23 1.1E-27 178.7 23.4 160 7-167 44-286 (608)
38 KOG4205|consensus 99.9 1.6E-23 3.5E-28 181.6 17.4 172 94-286 5-182 (311)
39 KOG0109|consensus 99.9 3.8E-24 8.3E-29 176.3 11.7 149 96-281 3-151 (346)
40 KOG1190|consensus 99.9 4.1E-22 9E-27 171.7 23.2 269 6-280 149-491 (492)
41 KOG0110|consensus 99.9 1.3E-23 2.8E-28 193.3 12.7 171 7-177 515-695 (725)
42 KOG0124|consensus 99.9 5.7E-23 1.2E-27 174.5 11.0 170 95-278 113-288 (544)
43 KOG4205|consensus 99.9 1.3E-22 2.7E-27 176.1 11.5 177 3-181 2-182 (311)
44 KOG0146|consensus 99.9 2.8E-22 6E-27 163.4 8.1 172 6-177 18-367 (371)
45 KOG1365|consensus 99.9 4.1E-21 8.9E-26 164.2 15.2 275 4-282 57-364 (508)
46 KOG0120|consensus 99.9 3.1E-21 6.6E-26 175.5 14.2 271 5-281 173-493 (500)
47 KOG0146|consensus 99.9 2.7E-21 5.8E-26 157.7 11.0 206 73-284 2-369 (371)
48 KOG4206|consensus 99.9 3E-20 6.6E-25 149.3 15.8 166 3-173 5-220 (221)
49 KOG0105|consensus 99.8 2.7E-20 5.8E-25 143.6 13.1 152 4-162 3-175 (241)
50 KOG1456|consensus 99.8 2.5E-18 5.5E-23 146.8 22.8 270 4-281 28-364 (494)
51 KOG1456|consensus 99.8 4.3E-17 9.2E-22 139.4 25.4 269 5-280 118-491 (494)
52 KOG4206|consensus 99.8 2E-18 4.3E-23 138.9 16.4 183 93-278 7-220 (221)
53 KOG0147|consensus 99.8 1.1E-19 2.3E-24 163.3 7.3 181 90-282 174-360 (549)
54 KOG0105|consensus 99.8 1.2E-17 2.6E-22 129.0 14.8 172 93-268 4-176 (241)
55 KOG1457|consensus 99.8 8.2E-18 1.8E-22 133.9 13.9 155 4-162 31-273 (284)
56 KOG4211|consensus 99.8 1.1E-16 2.3E-21 142.2 20.4 172 91-281 6-183 (510)
57 KOG1457|consensus 99.7 1.4E-16 2.9E-21 127.0 15.6 178 90-267 29-273 (284)
58 PLN03134 glycine-rich RNA-bind 99.7 3.1E-17 6.8E-22 128.8 11.9 86 92-177 31-116 (144)
59 PLN03134 glycine-rich RNA-bind 99.7 4.2E-17 9.2E-22 128.0 10.9 81 5-85 32-115 (144)
60 KOG0106|consensus 99.7 2.5E-17 5.4E-22 134.2 8.1 166 97-277 3-168 (216)
61 KOG0106|consensus 99.7 2.1E-17 4.6E-22 134.6 7.3 153 8-173 2-169 (216)
62 KOG0125|consensus 99.6 6.2E-16 1.3E-20 130.3 8.8 80 6-85 95-175 (376)
63 KOG1548|consensus 99.6 1.6E-14 3.5E-19 122.8 16.6 166 6-175 133-352 (382)
64 KOG0122|consensus 99.6 1.7E-15 3.6E-20 122.7 9.6 84 92-175 186-269 (270)
65 KOG0107|consensus 99.6 1.1E-15 2.5E-20 117.4 7.8 82 3-86 6-87 (195)
66 KOG1548|consensus 99.6 3E-14 6.5E-19 121.2 17.0 188 93-281 132-353 (382)
67 KOG0149|consensus 99.6 7.1E-16 1.5E-20 124.5 6.9 79 95-174 12-90 (247)
68 KOG4212|consensus 99.6 4.1E-14 8.9E-19 123.7 18.0 189 91-280 40-294 (608)
69 PF00076 RRM_1: RNA recognitio 99.6 1.8E-15 3.9E-20 104.6 7.5 68 10-77 1-70 (70)
70 PLN03120 nucleic acid binding 99.6 4.3E-15 9.3E-20 124.5 10.3 79 6-85 3-81 (260)
71 PF00076 RRM_1: RNA recognitio 99.6 9.8E-15 2.1E-19 100.8 8.5 70 98-168 1-70 (70)
72 KOG0122|consensus 99.6 1.3E-14 2.7E-19 117.7 9.0 80 5-84 187-269 (270)
73 KOG0125|consensus 99.6 1.7E-14 3.6E-19 121.8 9.1 85 89-175 90-174 (376)
74 PF14259 RRM_6: RNA recognitio 99.6 2.2E-14 4.9E-19 98.9 8.1 68 10-77 1-70 (70)
75 KOG0149|consensus 99.5 4E-14 8.7E-19 114.4 10.1 73 206-279 12-90 (247)
76 KOG0114|consensus 99.5 3.1E-14 6.8E-19 99.4 8.1 79 5-83 16-94 (124)
77 KOG0121|consensus 99.5 1.7E-14 3.8E-19 104.8 7.1 81 94-174 35-115 (153)
78 PF14259 RRM_6: RNA recognitio 99.5 6.1E-14 1.3E-18 96.7 9.4 70 98-168 1-70 (70)
79 KOG0121|consensus 99.5 2E-14 4.3E-19 104.5 6.8 79 4-82 33-114 (153)
80 COG0724 RNA-binding proteins ( 99.5 1.3E-13 2.8E-18 123.4 13.6 148 7-154 115-284 (306)
81 KOG0107|consensus 99.5 2.6E-14 5.5E-19 110.0 7.5 79 94-177 9-87 (195)
82 PLN03121 nucleic acid binding 99.5 8.7E-14 1.9E-18 114.7 9.2 77 6-83 4-80 (243)
83 COG0724 RNA-binding proteins ( 99.5 3.3E-13 7.2E-18 120.7 13.7 145 95-241 115-260 (306)
84 KOG0113|consensus 99.5 7.5E-14 1.6E-18 116.4 8.4 86 91-176 97-182 (335)
85 PLN03120 nucleic acid binding 99.5 3.4E-13 7.3E-18 113.2 10.5 77 95-175 4-80 (260)
86 PLN03213 repressor of silencin 99.5 1.7E-13 3.7E-18 121.8 8.9 79 4-83 7-87 (759)
87 KOG4207|consensus 99.5 1E-13 2.2E-18 109.5 6.6 88 90-177 8-95 (256)
88 KOG0114|consensus 99.5 6.8E-13 1.5E-17 92.8 9.6 84 89-175 12-95 (124)
89 KOG1365|consensus 99.5 1.4E-13 3.1E-18 118.5 7.3 165 7-173 161-360 (508)
90 KOG0126|consensus 99.4 2.4E-14 5.1E-19 110.7 1.2 84 92-175 32-115 (219)
91 smart00362 RRM_2 RNA recogniti 99.4 8E-13 1.7E-17 91.5 8.5 71 9-79 1-72 (72)
92 KOG0132|consensus 99.4 6.2E-12 1.4E-16 117.8 15.9 79 205-283 420-498 (894)
93 KOG0130|consensus 99.4 5.3E-13 1.1E-17 98.0 7.0 85 93-177 70-154 (170)
94 KOG4207|consensus 99.4 3.5E-13 7.7E-18 106.4 6.2 79 5-83 11-92 (256)
95 KOG0120|consensus 99.4 1.9E-12 4.1E-17 118.6 11.4 169 5-173 287-490 (500)
96 KOG0111|consensus 99.4 5.4E-13 1.2E-17 106.3 5.2 81 205-285 9-95 (298)
97 KOG0132|consensus 99.4 4E-11 8.7E-16 112.5 18.3 77 95-177 421-497 (894)
98 PLN03213 repressor of silencin 99.4 2.3E-12 4.9E-17 114.7 9.6 80 91-174 6-87 (759)
99 smart00362 RRM_2 RNA recogniti 99.4 4.3E-12 9.2E-17 87.8 9.2 72 97-170 1-72 (72)
100 PF13893 RRM_5: RNA recognitio 99.4 6E-12 1.3E-16 82.3 8.9 55 223-277 1-56 (56)
101 KOG0129|consensus 99.4 2.5E-11 5.3E-16 109.3 15.6 168 89-261 253-432 (520)
102 PF13893 RRM_5: RNA recognitio 99.4 3.3E-12 7.1E-17 83.5 7.5 56 24-81 1-56 (56)
103 PLN03121 nucleic acid binding 99.4 4E-12 8.7E-17 104.9 9.6 76 95-174 5-80 (243)
104 KOG0108|consensus 99.4 3E-12 6.4E-17 116.8 9.6 82 96-177 19-100 (435)
105 KOG4660|consensus 99.4 1.2E-11 2.7E-16 112.2 13.1 159 3-171 71-246 (549)
106 smart00360 RRM RNA recognition 99.3 5.1E-12 1.1E-16 87.1 8.3 71 100-170 1-71 (71)
107 cd00590 RRM RRM (RNA recogniti 99.3 6.8E-12 1.5E-16 87.2 8.9 72 9-80 1-74 (74)
108 KOG4307|consensus 99.3 6.2E-12 1.4E-16 116.3 9.6 180 95-276 311-510 (944)
109 KOG0130|consensus 99.3 2.9E-12 6.4E-17 94.1 5.9 76 9-84 74-152 (170)
110 smart00360 RRM RNA recognition 99.3 6.6E-12 1.4E-16 86.5 7.5 68 12-79 1-71 (71)
111 KOG0128|consensus 99.3 2.6E-13 5.6E-18 128.4 -0.1 230 7-279 571-814 (881)
112 KOG0129|consensus 99.3 6.2E-11 1.4E-15 106.8 14.2 149 5-156 257-432 (520)
113 KOG0111|consensus 99.3 2.5E-12 5.5E-17 102.6 4.7 83 93-175 8-90 (298)
114 KOG0113|consensus 99.3 1.4E-11 3.1E-16 103.0 8.9 80 4-83 98-180 (335)
115 cd00590 RRM RRM (RNA recogniti 99.3 3.9E-11 8.4E-16 83.4 9.6 74 97-171 1-74 (74)
116 KOG4454|consensus 99.3 1.1E-12 2.4E-17 104.6 1.6 144 4-166 6-154 (267)
117 smart00361 RRM_1 RNA recogniti 99.2 5.3E-11 1.1E-15 81.5 7.9 61 109-169 2-69 (70)
118 KOG0126|consensus 99.2 1.2E-12 2.6E-17 101.4 -0.8 84 3-86 31-117 (219)
119 KOG0108|consensus 99.2 2.4E-11 5.2E-16 110.9 7.3 79 8-86 19-100 (435)
120 KOG0226|consensus 99.2 1.8E-11 3.9E-16 100.1 3.5 167 9-175 98-270 (290)
121 KOG0415|consensus 99.1 9.9E-11 2.1E-15 100.2 6.7 84 92-175 236-319 (479)
122 smart00361 RRM_1 RNA recogniti 99.1 2.7E-10 5.8E-15 78.0 7.0 58 21-78 2-69 (70)
123 KOG4210|consensus 99.0 2.8E-10 6E-15 99.4 6.1 171 6-177 87-266 (285)
124 KOG0112|consensus 99.0 6.5E-10 1.4E-14 106.3 7.4 163 93-283 370-534 (975)
125 KOG0153|consensus 99.0 1.1E-09 2.3E-14 93.9 7.7 78 3-83 224-302 (377)
126 KOG0153|consensus 99.0 2.3E-09 4.9E-14 92.0 8.5 78 202-279 224-302 (377)
127 KOG0415|consensus 99.0 9.9E-10 2.1E-14 94.2 6.3 81 3-83 235-318 (479)
128 KOG0128|consensus 99.0 3.9E-11 8.6E-16 113.9 -2.4 147 5-174 665-814 (881)
129 KOG4660|consensus 99.0 8.1E-10 1.8E-14 100.6 5.8 183 86-279 66-249 (549)
130 KOG4208|consensus 98.9 3.7E-09 7.9E-14 84.4 8.3 87 89-175 43-130 (214)
131 KOG4454|consensus 98.9 2E-10 4.4E-15 91.9 1.2 136 91-266 5-149 (267)
132 KOG4661|consensus 98.9 2E-09 4.4E-14 97.8 7.6 79 6-84 404-485 (940)
133 KOG0112|consensus 98.9 6.9E-10 1.5E-14 106.1 4.4 159 3-174 368-530 (975)
134 KOG4307|consensus 98.9 6E-08 1.3E-12 90.5 16.6 168 5-175 309-514 (944)
135 KOG4208|consensus 98.9 7.6E-09 1.7E-13 82.6 7.7 80 4-83 46-129 (214)
136 PF11608 Limkain-b1: Limkain b 98.8 1.2E-08 2.7E-13 69.0 6.7 69 8-83 3-76 (90)
137 KOG0226|consensus 98.8 3.8E-09 8.3E-14 86.7 4.7 168 93-280 94-270 (290)
138 KOG4210|consensus 98.8 8E-09 1.7E-13 90.3 5.7 174 93-281 86-265 (285)
139 KOG4661|consensus 98.8 2.3E-08 5.1E-13 91.1 8.1 82 95-176 405-486 (940)
140 KOG0533|consensus 98.7 1.2E-07 2.6E-12 79.8 8.5 82 4-85 80-163 (243)
141 PF04059 RRM_2: RNA recognitio 98.6 1.4E-07 3.1E-12 67.6 7.6 77 7-83 1-86 (97)
142 KOG0533|consensus 98.6 2E-07 4.4E-12 78.5 8.4 84 91-175 79-162 (243)
143 KOG0151|consensus 98.6 1.2E-07 2.5E-12 88.9 7.6 80 4-83 171-256 (877)
144 PF04059 RRM_2: RNA recognitio 98.6 3.8E-07 8.2E-12 65.4 8.5 78 96-173 2-85 (97)
145 KOG0116|consensus 98.5 5E-07 1.1E-11 82.4 10.1 74 207-281 289-368 (419)
146 KOG0116|consensus 98.5 2.9E-07 6.3E-12 84.0 7.6 79 95-174 288-366 (419)
147 KOG0151|consensus 98.4 1.9E-06 4.1E-11 81.1 9.9 85 199-283 167-260 (877)
148 KOG4209|consensus 98.4 5.5E-07 1.2E-11 76.1 5.6 80 4-84 98-180 (231)
149 KOG4209|consensus 98.4 6.9E-07 1.5E-11 75.6 6.1 84 91-175 97-180 (231)
150 KOG2193|consensus 98.3 4.7E-08 1E-12 86.0 -1.9 152 8-175 2-157 (584)
151 PF11608 Limkain-b1: Limkain b 98.3 2.7E-06 5.8E-11 57.9 6.3 71 207-281 3-78 (90)
152 PF08777 RRM_3: RNA binding mo 98.3 1.7E-06 3.6E-11 63.8 5.6 59 8-69 2-60 (105)
153 KOG4676|consensus 98.2 6.2E-07 1.3E-11 78.4 2.8 153 5-163 5-214 (479)
154 KOG2193|consensus 98.2 1.2E-07 2.6E-12 83.5 -1.8 153 96-281 2-158 (584)
155 KOG4849|consensus 98.2 4.2E-05 9.2E-10 66.1 13.0 78 92-169 77-156 (498)
156 PF08777 RRM_3: RNA binding mo 98.2 4.8E-06 1E-10 61.4 6.2 69 207-275 2-75 (105)
157 PF14605 Nup35_RRM_2: Nup53/35 98.0 1.7E-05 3.6E-10 50.4 5.1 53 7-63 1-53 (53)
158 KOG4849|consensus 97.9 0.00015 3.2E-09 62.9 10.9 68 207-274 81-156 (498)
159 KOG4676|consensus 97.9 1.4E-05 3E-10 70.2 4.5 172 95-268 7-214 (479)
160 PF05172 Nup35_RRM: Nup53/35/4 97.9 7.4E-05 1.6E-09 54.1 7.0 76 4-81 3-89 (100)
161 COG5175 MOT2 Transcriptional r 97.8 3.6E-05 7.9E-10 66.2 5.5 77 7-83 114-202 (480)
162 COG5175 MOT2 Transcriptional r 97.8 9E-05 1.9E-09 63.9 7.3 81 95-175 114-203 (480)
163 PF14605 Nup35_RRM_2: Nup53/35 97.7 8.7E-05 1.9E-09 47.1 4.9 51 208-259 3-53 (53)
164 KOG1855|consensus 97.7 3E-05 6.6E-10 69.0 3.4 68 3-70 227-310 (484)
165 KOG0115|consensus 97.6 0.00014 3E-09 60.5 6.4 91 57-160 5-95 (275)
166 KOG1995|consensus 97.6 5.2E-05 1.1E-09 66.3 4.0 86 92-177 63-156 (351)
167 KOG2591|consensus 97.6 0.0013 2.8E-08 60.8 12.2 70 206-276 175-248 (684)
168 KOG3152|consensus 97.6 4.3E-05 9.3E-10 63.5 2.2 70 6-75 73-157 (278)
169 KOG1995|consensus 97.5 0.00011 2.3E-09 64.4 4.3 84 2-85 61-155 (351)
170 PF08952 DUF1866: Domain of un 97.4 0.0012 2.7E-08 50.8 8.0 73 5-83 25-106 (146)
171 KOG1855|consensus 97.4 0.00066 1.4E-08 60.8 7.2 81 91-171 227-320 (484)
172 PF05172 Nup35_RRM: Nup53/35/4 97.3 0.0014 3.1E-08 47.5 7.7 71 207-279 7-91 (100)
173 KOG2202|consensus 97.3 9.8E-05 2.1E-09 61.6 1.8 61 221-281 83-149 (260)
174 KOG2314|consensus 97.3 0.00065 1.4E-08 62.9 6.7 78 92-170 55-139 (698)
175 KOG0115|consensus 97.3 0.00053 1.2E-08 57.2 5.6 84 149-264 6-94 (275)
176 PF08952 DUF1866: Domain of un 97.3 0.002 4.3E-08 49.7 7.9 81 197-280 18-107 (146)
177 KOG2314|consensus 97.2 0.001 2.3E-08 61.6 7.2 79 3-81 54-141 (698)
178 KOG3152|consensus 97.2 0.00021 4.5E-09 59.5 2.4 73 94-166 73-157 (278)
179 KOG2416|consensus 97.2 0.00034 7.4E-09 65.0 3.5 77 4-83 441-521 (718)
180 PF15023 DUF4523: Protein of u 97.1 0.003 6.4E-08 47.9 7.5 75 3-82 82-160 (166)
181 KOG2202|consensus 97.1 0.00031 6.7E-09 58.7 2.0 60 23-82 84-146 (260)
182 PF03467 Smg4_UPF3: Smg-4/UPF3 97.0 0.0017 3.7E-08 52.9 5.7 83 1-83 1-97 (176)
183 KOG1996|consensus 96.9 0.0023 5E-08 54.4 6.1 76 7-82 281-365 (378)
184 KOG1996|consensus 96.8 0.0032 7E-08 53.6 6.0 61 220-280 300-367 (378)
185 PF07576 BRAP2: BRCA1-associat 96.6 0.018 3.9E-07 42.7 8.1 68 6-73 12-81 (110)
186 PF10309 DUF2414: Protein of u 96.5 0.016 3.4E-07 37.8 6.4 54 7-66 5-62 (62)
187 KOG2416|consensus 96.5 0.0024 5.1E-08 59.7 3.6 81 202-282 440-524 (718)
188 KOG2591|consensus 96.4 0.0058 1.2E-07 56.7 5.2 73 5-81 173-249 (684)
189 PF08675 RNA_bind: RNA binding 96.3 0.032 6.9E-07 38.4 7.3 56 95-159 9-64 (87)
190 PF08675 RNA_bind: RNA binding 96.2 0.021 4.5E-07 39.3 6.0 56 8-68 9-64 (87)
191 PF10309 DUF2414: Protein of u 96.2 0.023 5E-07 37.0 5.8 53 208-262 7-62 (62)
192 PF15023 DUF4523: Protein of u 96.2 0.031 6.7E-07 42.6 7.2 76 201-278 81-160 (166)
193 KOG4285|consensus 96.0 0.024 5.3E-07 48.7 6.7 72 7-83 197-269 (350)
194 KOG1924|consensus 95.9 0.034 7.3E-07 54.1 8.0 14 53-66 206-219 (1102)
195 PF10567 Nab6_mRNP_bdg: RNA-re 95.9 0.34 7.4E-06 41.9 13.0 154 6-160 14-214 (309)
196 PF04847 Calcipressin: Calcipr 95.8 0.033 7.1E-07 45.6 6.5 63 219-281 8-72 (184)
197 PF07292 NID: Nmi/IFP 35 domai 95.6 0.02 4.3E-07 40.3 4.1 69 49-117 1-74 (88)
198 KOG0804|consensus 95.6 0.079 1.7E-06 48.3 8.6 70 4-73 71-142 (493)
199 PF04847 Calcipressin: Calcipr 95.5 0.037 8E-07 45.3 5.8 62 19-83 7-70 (184)
200 KOG2068|consensus 95.4 0.0065 1.4E-07 53.1 1.3 76 8-83 78-162 (327)
201 KOG2068|consensus 95.0 0.0096 2.1E-07 52.1 1.1 82 95-176 77-164 (327)
202 PF10567 Nab6_mRNP_bdg: RNA-re 94.9 2 4.3E-05 37.3 14.4 174 90-265 10-214 (309)
203 PF07576 BRAP2: BRCA1-associat 94.8 0.46 1E-05 35.3 9.3 68 94-163 12-80 (110)
204 PF03467 Smg4_UPF3: Smg-4/UPF3 94.7 0.071 1.5E-06 43.5 5.3 82 93-174 5-97 (176)
205 KOG0804|consensus 94.6 0.32 7E-06 44.5 9.5 74 89-164 68-142 (493)
206 KOG4574|consensus 94.2 0.029 6.3E-07 54.9 2.3 70 11-83 302-373 (1007)
207 KOG4574|consensus 93.9 0.043 9.3E-07 53.8 2.8 75 208-282 300-376 (1007)
208 KOG2135|consensus 93.9 0.063 1.4E-06 49.2 3.6 75 208-283 374-449 (526)
209 PF11767 SET_assoc: Histone ly 93.8 0.38 8.3E-06 31.9 6.4 55 18-78 11-65 (66)
210 KOG2135|consensus 93.8 0.03 6.5E-07 51.2 1.5 76 5-84 370-446 (526)
211 PF03880 DbpA: DbpA RNA bindin 93.8 0.15 3.2E-06 35.0 4.6 66 9-81 2-74 (74)
212 KOG4285|consensus 93.8 0.2 4.3E-06 43.3 6.2 73 207-281 198-271 (350)
213 KOG1924|consensus 93.3 0.39 8.5E-06 47.2 7.9 14 19-32 83-96 (1102)
214 PF11767 SET_assoc: Histone ly 93.2 0.58 1.3E-05 31.0 6.5 55 217-274 11-65 (66)
215 PF07292 NID: Nmi/IFP 35 domai 92.9 0.28 6.1E-06 34.6 4.9 72 140-228 1-74 (88)
216 KOG2318|consensus 91.2 1.1 2.4E-05 42.5 8.0 128 4-172 171-305 (650)
217 KOG2253|consensus 91.0 0.14 3.1E-06 49.1 2.1 73 202-277 36-108 (668)
218 KOG2253|consensus 90.0 0.2 4.4E-06 48.0 2.3 107 5-117 38-157 (668)
219 KOG4019|consensus 88.9 0.42 9.2E-06 38.2 2.9 75 6-83 9-89 (193)
220 PF03880 DbpA: DbpA RNA bindin 87.2 2.6 5.7E-05 28.7 5.8 58 217-277 12-74 (74)
221 KOG4019|consensus 85.3 1.1 2.4E-05 35.9 3.4 76 209-284 13-94 (193)
222 KOG2236|consensus 85.1 2.5 5.4E-05 39.2 6.0 8 246-253 318-325 (483)
223 KOG2318|consensus 85.0 4.5 9.7E-05 38.7 7.7 78 203-280 171-308 (650)
224 PF14111 DUF4283: Domain of un 83.7 1.7 3.7E-05 34.4 4.1 108 18-128 28-138 (153)
225 KOG2295|consensus 81.6 0.27 5.9E-06 46.1 -1.4 72 6-77 230-304 (648)
226 PF03468 XS: XS domain; Inter 80.4 2.6 5.7E-05 31.7 3.7 59 9-68 10-78 (116)
227 KOG4410|consensus 77.5 3.5 7.5E-05 35.6 3.9 51 6-58 329-379 (396)
228 PRK14548 50S ribosomal protein 77.5 7.4 0.00016 27.3 5.0 57 10-66 23-81 (84)
229 TIGR03636 L23_arch archaeal ri 75.5 10 0.00022 26.1 5.1 58 9-66 15-74 (77)
230 KOG1295|consensus 74.4 5 0.00011 36.4 4.3 72 2-73 2-79 (376)
231 KOG4410|consensus 73.1 9.5 0.00021 33.0 5.4 51 203-253 327-378 (396)
232 KOG2199|consensus 72.4 5.2 0.00011 36.4 3.9 9 146-154 165-173 (462)
233 KOG4213|consensus 68.3 8.3 0.00018 31.0 3.8 54 8-65 112-169 (205)
234 PF14111 DUF4283: Domain of un 66.9 4.8 0.0001 31.8 2.5 86 136-241 54-140 (153)
235 KOG4483|consensus 66.9 13 0.00029 33.8 5.3 60 3-65 387-446 (528)
236 PF02714 DUF221: Domain of unk 61.6 15 0.00033 33.3 5.0 56 49-117 1-56 (325)
237 KOG4213|consensus 60.8 17 0.00037 29.3 4.3 58 95-156 111-169 (205)
238 PRK09631 DNA topoisomerase IV 59.1 45 0.00098 33.3 7.8 94 6-116 219-316 (635)
239 COG0018 ArgS Arginyl-tRNA synt 55.5 1.2E+02 0.0026 30.1 10.0 103 103-241 54-165 (577)
240 KOG4008|consensus 55.3 10 0.00022 32.0 2.3 36 2-37 35-70 (261)
241 KOG0921|consensus 54.4 57 0.0012 33.8 7.6 14 134-147 899-912 (1282)
242 TIGR02542 B_forsyth_147 Bacter 53.8 22 0.00047 26.3 3.5 113 15-147 11-129 (145)
243 PF07530 PRE_C2HC: Associated 53.5 27 0.00059 23.3 3.8 63 110-175 2-65 (68)
244 KOG1676|consensus 53.3 77 0.0017 30.9 8.0 18 111-130 160-177 (600)
245 smart00596 PRE_C2HC PRE_C2HC d 50.7 26 0.00057 23.4 3.3 61 110-173 2-63 (69)
246 PF02714 DUF221: Domain of unk 49.0 33 0.00071 31.1 5.0 31 140-172 1-31 (325)
247 KOG0921|consensus 48.9 1.5E+02 0.0033 30.9 9.5 13 247-259 1086-1098(1282)
248 KOG2891|consensus 48.4 10 0.00023 32.6 1.5 75 206-280 149-268 (445)
249 PRK09630 DNA topoisomerase IV 47.9 95 0.002 29.6 7.6 92 6-114 219-314 (479)
250 KOG2891|consensus 47.6 15 0.00033 31.6 2.3 22 107-128 173-194 (445)
251 KOG2295|consensus 47.4 2.6 5.7E-05 39.9 -2.4 71 93-163 229-299 (648)
252 PF08544 GHMP_kinases_C: GHMP 47.4 57 0.0012 22.3 5.1 44 22-67 37-80 (85)
253 KOG4483|consensus 46.2 94 0.002 28.7 7.0 55 94-155 390-445 (528)
254 PF00403 HMA: Heavy-metal-asso 44.9 81 0.0017 20.1 6.9 54 9-65 1-58 (62)
255 PTZ00191 60S ribosomal protein 43.7 68 0.0015 25.1 5.1 55 11-65 85-141 (145)
256 PF00403 HMA: Heavy-metal-asso 43.3 86 0.0019 19.9 6.2 53 209-261 2-58 (62)
257 PF13046 DUF3906: Protein of u 41.3 42 0.00091 22.0 3.0 33 19-51 30-63 (64)
258 PF14893 PNMA: PNMA 40.0 22 0.00048 32.2 2.3 51 5-56 16-72 (331)
259 PRK14548 50S ribosomal protein 39.0 88 0.0019 22.0 4.6 53 102-157 27-81 (84)
260 PRK12758 DNA topoisomerase IV 37.9 1.9E+02 0.004 30.2 8.4 95 5-116 239-337 (869)
261 cd00187 TOP4c DNA Topoisomeras 37.5 1.6E+02 0.0034 28.2 7.6 96 7-118 225-326 (445)
262 PF15513 DUF4651: Domain of un 37.4 37 0.0008 22.2 2.3 19 221-239 9-27 (62)
263 cd04889 ACT_PDH-BS-like C-term 36.9 1E+02 0.0022 19.0 4.9 43 21-63 12-55 (56)
264 PF09869 DUF2096: Uncharacteri 36.9 1.5E+02 0.0033 23.7 6.1 53 7-67 112-164 (169)
265 PF02829 3H: 3H domain; Inter 36.4 1.6E+02 0.0035 21.3 5.9 54 16-69 6-59 (98)
266 PRK10629 EnvZ/OmpR regulon mod 35.6 2E+02 0.0044 22.0 7.5 61 5-70 33-97 (127)
267 PF03439 Spt5-NGN: Early trans 35.0 1.1E+02 0.0025 21.3 4.8 34 232-265 33-67 (84)
268 PF03439 Spt5-NGN: Early trans 34.1 80 0.0017 22.0 3.9 35 121-160 33-67 (84)
269 COG5638 Uncharacterized conser 33.3 1.8E+02 0.004 26.9 6.8 81 200-280 140-298 (622)
270 COG5193 LHP1 La protein, small 33.2 20 0.00043 32.9 0.9 58 7-64 174-244 (438)
271 PHA03378 EBNA-3B; Provisional 32.3 3.6E+02 0.0078 27.1 8.9 9 208-216 540-548 (991)
272 COG0771 MurD UDP-N-acetylmuram 30.1 2.8E+02 0.0061 26.5 7.9 52 209-262 348-410 (448)
273 PF08544 GHMP_kinases_C: GHMP 29.1 1.9E+02 0.0041 19.6 5.7 43 220-263 36-80 (85)
274 PF11823 DUF3343: Protein of u 29.0 86 0.0019 21.1 3.3 28 243-270 2-29 (73)
275 KOG4365|consensus 28.8 9.4 0.0002 35.2 -1.8 75 97-172 5-79 (572)
276 cd04908 ACT_Bt0572_1 N-termina 28.2 1.7E+02 0.0037 18.9 7.7 48 20-69 14-62 (66)
277 PRK11901 hypothetical protein; 27.9 90 0.0019 28.1 4.0 59 8-70 246-308 (327)
278 COG5180 PBP1 Protein interacti 27.4 1.9E+02 0.0041 27.4 6.0 79 289-383 527-605 (654)
279 PF11411 DNA_ligase_IV: DNA li 26.8 45 0.00098 19.0 1.3 16 17-32 19-34 (36)
280 COG5584 Predicted small secret 25.6 1.7E+02 0.0036 21.1 4.1 33 101-133 28-60 (103)
281 KOG1295|consensus 25.1 98 0.0021 28.4 3.8 61 207-267 8-77 (376)
282 PF00521 DNA_topoisoIV: DNA gy 24.2 1.9E+02 0.0041 27.5 5.8 59 8-67 217-279 (426)
283 cd04880 ACT_AAAH-PDT-like ACT 24.1 2.2E+02 0.0049 18.9 5.6 50 19-68 11-66 (75)
284 smart00434 TOP4c DNA Topoisome 23.8 2.9E+02 0.0064 26.5 6.9 60 6-65 231-296 (445)
285 PF08156 NOP5NT: NOP5NT (NUC12 23.8 31 0.00067 23.0 0.3 38 22-66 27-64 (67)
286 CHL00123 rps6 ribosomal protei 23.6 1.4E+02 0.0031 21.5 3.8 51 15-65 14-81 (97)
287 COG2608 CopZ Copper chaperone 22.5 2.5E+02 0.0053 18.7 5.3 44 208-251 5-48 (71)
288 PRK10629 EnvZ/OmpR regulon mod 22.4 3.6E+02 0.0079 20.6 7.5 69 208-278 37-109 (127)
289 KOG2375|consensus 22.1 3.2E+02 0.0069 28.0 6.9 7 317-323 593-599 (756)
290 TIGR01061 parC_Gpos DNA topois 21.7 4.3E+02 0.0094 27.3 8.0 60 7-66 248-312 (738)
291 COG0018 ArgS Arginyl-tRNA synt 21.6 6.8E+02 0.015 25.0 9.1 97 21-130 60-165 (577)
292 PF02829 3H: 3H domain; Inter 21.2 3.3E+02 0.0072 19.7 5.2 48 217-264 8-58 (98)
293 COG3254 Uncharacterized conser 21.1 2.6E+02 0.0057 20.5 4.6 41 23-64 28-69 (105)
294 PRK11901 hypothetical protein; 21.0 2.1E+02 0.0045 25.9 4.9 63 93-160 243-307 (327)
295 PRK11558 putative ssRNA endonu 20.7 3E+02 0.0065 20.0 4.8 49 6-56 26-76 (97)
296 COG5193 LHP1 La protein, small 20.5 56 0.0012 30.1 1.4 61 95-155 174-244 (438)
297 COG4010 Uncharacterized protei 20.4 3E+02 0.0065 21.5 5.0 46 15-67 119-164 (170)
298 PF10915 DUF2709: Protein of u 20.2 1.9E+02 0.004 23.8 4.0 31 52-83 48-78 (238)
No 1
>KOG0148|consensus
Probab=100.00 E-value=6.2e-50 Score=324.44 Aligned_cols=242 Identities=58% Similarity=1.035 Sum_probs=225.0
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
++++.|||||+||+.++||+-|..||++.|+|.+++++.+ +++|.|+.
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~~lf~qig~v~~~k~i~~--------------------------------e~~v~wa~ 49 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFD--------------------------------ELKVNWAT 49 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHHHHHHhccccccceeehh--------------------------------hhcccccc
Confidence 4678899999999999999999999999999999999865 78888998
Q ss_pred CCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee
Q psy2618 83 SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162 (390)
Q Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 162 (390)
.+...++.....+..+||+.|..+++.++|++.|.+||+|.+++|++|..|++++||+||.|.+.++|++||..++|..|
T Consensus 50 ~p~nQsk~t~~~hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWl 129 (321)
T KOG0148|consen 50 APGNQSKPTSNQHFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWL 129 (321)
T ss_pred CcccCCCCccccceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeee
Confidence 88777788888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCC
Q psy2618 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242 (390)
Q Consensus 163 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~ 242 (390)
++|.|+..|+.+++ .........++++++..++++|+|||||++..++|++|++.|++||.|.+|++.+++
T Consensus 130 G~R~IRTNWATRKp---------~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q 200 (321)
T KOG0148|consen 130 GRRTIRTNWATRKP---------SEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ 200 (321)
T ss_pred ccceeeccccccCc---------cccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc
Confidence 99999999999887 122333467888999999999999999999999999999999999999999999999
Q ss_pred CeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCCCC
Q psy2618 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285 (390)
Q Consensus 243 g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~ 285 (390)
||+||+|++.|.|.+||..+|+.++.|..++|+|.+.......
T Consensus 201 GYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~~~~~ 243 (321)
T KOG0148|consen 201 GYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGDDGIN 243 (321)
T ss_pred ceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCCCCCC
Confidence 9999999999999999999999999999999999988765433
No 2
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=3.8e-47 Score=349.69 Aligned_cols=272 Identities=24% Similarity=0.449 Sum_probs=224.6
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+++++|||+|||.++++++|+++|+.||+|.+|++++++. ++|||||+|.+.++|++||+.||+..+.|++|+|.++
T Consensus 1 ~~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a 80 (352)
T TIGR01661 1 ESKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYA 80 (352)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEee
Confidence 3689999999999999999999999999999999998753 6799999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCce
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW 161 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 161 (390)
.+.. +....++|||+|||..+++++|+++|+.||.|..+.++.+..++.++|||||+|.+.++|.+|++.|++..
T Consensus 81 ~~~~-----~~~~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~ 155 (352)
T TIGR01661 81 RPSS-----DSIKGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTT 155 (352)
T ss_pred cccc-----cccccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCc
Confidence 7532 23345789999999999999999999999999999999998888999999999999999999999999998
Q ss_pred eCC--eeEEEeecCCCCCCCcccccc----------cCCCC---------------------------------------
Q psy2618 162 LGS--RSIRTNWSTRKPPAMTNERKR----------QNSHT--------------------------------------- 190 (390)
Q Consensus 162 ~~g--~~i~v~~~~~~~~~~~~~~~~----------~~~~~--------------------------------------- 190 (390)
+.| +.|.|.++............. .....
T Consensus 156 ~~g~~~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (352)
T TIGR01661 156 PSGCTEPITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAV 235 (352)
T ss_pred cCCCceeEEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccc
Confidence 877 567888875433110000000 00000
Q ss_pred ------cccc------------ccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEE
Q psy2618 191 ------KTIT------------FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAF 246 (390)
Q Consensus 191 ------~~~~------------~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~f 246 (390)
.... ...........+.+|||+||+.++++++|+++|++||.|++++++++ +||||
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aF 315 (352)
T TIGR01661 236 AQQHAAQRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGF 315 (352)
T ss_pred ccccccccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEE
Confidence 0000 00000001122346999999999999999999999999999999966 79999
Q ss_pred EEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 247 VKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 247 v~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
|+|.+.++|.+|++.|||..++||.|+|.|...+.
T Consensus 316 V~F~~~~~A~~Ai~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 316 VSMTNYDEAAMAILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred EEECCHHHHHHHHHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999999999999999988764
No 3
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=5.7e-47 Score=367.88 Aligned_cols=268 Identities=24% Similarity=0.468 Sum_probs=228.1
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
..++|||+|||.++++++|+++|+.||.|++|++..+.. ++|||||+|.+.++|.+|++.+|+..+.++.|.|.....
T Consensus 87 ~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~~~i~v~~~~~ 166 (562)
T TIGR01628 87 GVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLNDKEVYVGRFIK 166 (562)
T ss_pred CCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecCceEEEecccc
Confidence 356899999999999999999999999999999988754 689999999999999999999999999999999987766
Q ss_pred CCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 84 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
...+........++|||+||+.++++++|+++|+.||.|.++.++++. +++++|||||+|.+.++|.+|++.+++..+.
T Consensus 167 ~~~~~~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~-~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~ 245 (562)
T TIGR01628 167 KHEREAAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDG-SGRSRGFAFVNFEKHEDAAKAVEEMNGKKIG 245 (562)
T ss_pred ccccccccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCcEec
Confidence 555433344566789999999999999999999999999999999884 6789999999999999999999999999999
Q ss_pred ----CeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEe
Q psy2618 164 ----SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239 (390)
Q Consensus 164 ----g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~ 239 (390)
|+.|.|.++..+............. ...........++|||+||+..+++++|+++|++||.|++++++
T Consensus 246 ~~~~g~~l~v~~a~~k~er~~~~~~~~~~-------~~~~~~~~~~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~ 318 (562)
T TIGR01628 246 LAKEGKKLYVGRAQKRAEREAELRRKFEE-------LQQERKMKAQGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVM 318 (562)
T ss_pred ccccceeeEeecccChhhhHHHHHhhHHh-------hhhhhhcccCCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEE
Confidence 9999999876554321111100000 00001122345679999999999999999999999999999998
Q ss_pred cC-----CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 240 KE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 240 ~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
.+ +|+|||+|.+.++|.+|+..||+..++|+.|.|.++..+.
T Consensus 319 ~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~ 365 (562)
T TIGR01628 319 LDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKE 365 (562)
T ss_pred ECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcH
Confidence 65 6999999999999999999999999999999999998765
No 4
>KOG0117|consensus
Probab=100.00 E-value=5.7e-45 Score=315.25 Aligned_cols=247 Identities=21% Similarity=0.410 Sum_probs=217.8
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeec-cceeeEeecC
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFL-EKEMKVNWAS 82 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~-g~~l~v~~~~ 82 (390)
-|-|||+.||.++.|++|.-+|++.|+|.++++..|+ .+||||||.|++.++|.+|++.||+..|. |+.|.|..+-
T Consensus 83 G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 83 GCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred CceEEecCCCccccchhhHHHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 4789999999999999999999999999999999884 38899999999999999999999999875 8999999775
Q ss_pred CCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCC-eeEEEEeeCCCC-CCCCcEEEEEecCHHHHHHHHHHhcC-
Q psy2618 83 SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE-ISNCRIVRDPQT-LKSKGYAFVSFVKKAEAENAITAMNG- 159 (390)
Q Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~a~~~l~~- 159 (390)
. +++|||+|||.++++++|.+.+++.++ |.+|.+..++.+ .++||||||+|.+...|..|..+|-.
T Consensus 163 a-----------n~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g 231 (506)
T KOG0117|consen 163 A-----------NCRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPG 231 (506)
T ss_pred e-----------cceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCC
Confidence 4 688999999999999999999999998 888888777543 56899999999999999999887753
Q ss_pred -ceeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEE
Q psy2618 160 -QWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238 (390)
Q Consensus 160 -~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 238 (390)
..++|..+.|.|+.+....... .....+.|||+||+.++|+|.|+++|++||.|++|+.
T Consensus 232 ~~klwgn~~tVdWAep~~e~ded--------------------~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk 291 (506)
T KOG0117|consen 232 KIKLWGNAITVDWAEPEEEPDED--------------------TMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKK 291 (506)
T ss_pred ceeecCCcceeeccCcccCCChh--------------------hhhheeeeeeeccchhhhHHHHHHHHHhccceEEeec
Confidence 4679999999999876432221 1112356999999999999999999999999999988
Q ss_pred ecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCCCCC
Q psy2618 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTL 286 (390)
Q Consensus 239 ~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~ 286 (390)
++| ||||.|.+.++|.+|++.+|+++|+|..|.|.+|++.......
T Consensus 292 ~rD--YaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 292 PRD--YAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred ccc--eeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 866 9999999999999999999999999999999999987655443
No 5
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=7e-43 Score=339.29 Aligned_cols=248 Identities=29% Similarity=0.525 Sum_probs=216.3
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
.+|||+|||.++++++|+++|+.||+|.+|++.+++. ++|||||+|.+.++|++|++.+++..+.|+.|+|.|+...
T Consensus 1 ~sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s~~~ 80 (562)
T TIGR01628 1 ASLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWSQRD 80 (562)
T ss_pred CeEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeeccccc
Confidence 3799999999999999999999999999999998764 6789999999999999999999999999999999998642
Q ss_pred CCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCC
Q psy2618 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS 164 (390)
Q Consensus 85 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 164 (390)
.. ......++|||+||+.++++++|+++|+.||.|.+|+++.+ .+|+++|||||+|.+.++|.+|++.+++..+.+
T Consensus 81 ~~---~~~~~~~~vfV~nLp~~~~~~~L~~~F~~~G~i~~~~i~~~-~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~ 156 (562)
T TIGR01628 81 PS---LRRSGVGNIFVKNLDKSVDNKALFDTFSKFGNILSCKVATD-ENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND 156 (562)
T ss_pred cc---ccccCCCceEEcCCCccCCHHHHHHHHHhcCCcceeEeeec-CCCCcccEEEEEECCHHHHHHHHHHhcccEecC
Confidence 21 12234568999999999999999999999999999999988 467899999999999999999999999999999
Q ss_pred eeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC---
Q psy2618 165 RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241 (390)
Q Consensus 165 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~--- 241 (390)
+.|.|.....+.... .......++|||+||+.++++++|+++|+.||.|+++.+.++
T Consensus 157 ~~i~v~~~~~~~~~~--------------------~~~~~~~~~l~V~nl~~~~tee~L~~~F~~fG~i~~~~i~~~~~g 216 (562)
T TIGR01628 157 KEVYVGRFIKKHERE--------------------AAPLKKFTNLYVKNLDPSVNEDKLRELFAKFGEITSAAVMKDGSG 216 (562)
T ss_pred ceEEEeccccccccc--------------------cccccCCCeEEEeCCCCcCCHHHHHHHHHhcCCEEEEEEEECCCC
Confidence 999997654332211 001122356999999999999999999999999999999865
Q ss_pred --CCeEEEEecCHHHHHHHHHHhcCceec----CeEEEEEeccc
Q psy2618 242 --KGYAFVKFTTKETATHAIESIHNTDIN----GHTVKCFWGKE 279 (390)
Q Consensus 242 --~g~~fv~f~~~~~a~~a~~~l~~~~~~----g~~i~v~~~~~ 279 (390)
+|+|||+|.+.++|.+|++.|++..+. |+.|.|.++..
T Consensus 217 ~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~ 260 (562)
T TIGR01628 217 RSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQK 260 (562)
T ss_pred CcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccC
Confidence 689999999999999999999999999 99988877643
No 6
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=100.00 E-value=4.8e-43 Score=328.25 Aligned_cols=245 Identities=21% Similarity=0.403 Sum_probs=208.1
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeec-cceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFL-EKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~-g~~l~v~~~~ 82 (390)
..++|||+|||+++++++|+++|++||.|.+|+++.|.. ++|||||+|.+.++|++||+.||+..+. ++.|.|.++.
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 358999999999999999999999999999999998743 7899999999999999999999998885 6777776543
Q ss_pred CCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCC-eeEEEEee-CCCCCCCCcEEEEEecCHHHHHHHHHHhcC-
Q psy2618 83 SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE-ISNCRIVR-DPQTLKSKGYAFVSFVKKAEAENAITAMNG- 159 (390)
Q Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~-~~~~g~~~g~afv~f~~~~~a~~a~~~l~~- 159 (390)
..++|||+|||+++++++|.+.|++++. +.++.+.. ....++++|||||+|.+.++|..|++.|+.
T Consensus 137 -----------~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~g 205 (578)
T TIGR01648 137 -----------DNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPG 205 (578)
T ss_pred -----------cCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhcc
Confidence 3578999999999999999999999875 54544432 234567899999999999999999998864
Q ss_pred -ceeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCC--CceeEE
Q psy2618 160 -QWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF--GTIVDI 236 (390)
Q Consensus 160 -~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~ 236 (390)
..+.|+.|.|.|+.+...... ......++|||+||+.++++++|+++|+.| |.|++|
T Consensus 206 ki~l~Gr~I~VdwA~p~~~~d~--------------------~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV 265 (578)
T TIGR01648 206 RIQLWGHVIAVDWAEPEEEVDE--------------------DVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERV 265 (578)
T ss_pred ceEecCceEEEEeecccccccc--------------------cccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEE
Confidence 467899999999876532110 011123579999999999999999999999 999999
Q ss_pred EEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCC
Q psy2618 237 RVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283 (390)
Q Consensus 237 ~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 283 (390)
.++ +++|||+|.+.++|.+|++.||+..|+|+.|+|.|+++....
T Consensus 266 ~~~--rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~ 310 (578)
T TIGR01648 266 KKI--RDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKK 310 (578)
T ss_pred Eee--cCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCcc
Confidence 876 569999999999999999999999999999999999876543
No 7
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=2.7e-41 Score=319.83 Aligned_cols=269 Identities=15% Similarity=0.218 Sum_probs=214.1
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh--cCeeeccceeeEeecCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM--NKRVFLEKEMKVNWASS 83 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~ 83 (390)
++++|||+|||+++++++|+++|+.||.|.+|+++++ +++|||+|.+.++|++|++.+ ++..+.|+.|.|.++..
T Consensus 1 ps~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~---k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~ 77 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPG---KRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTS 77 (481)
T ss_pred CccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECC---CCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCC
Confidence 5899999999999999999999999999999999864 569999999999999999874 67889999999999965
Q ss_pred CCCC-CC------CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHH
Q psy2618 84 PGNQ-PK------QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156 (390)
Q Consensus 84 ~~~~-~~------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 156 (390)
.... .. .......+|+|+||++.+++++|+++|+.||.|.+|.++++. .+++|||+|.+.++|.+|++.
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~----~~~~afVef~~~~~A~~A~~~ 153 (481)
T TIGR01649 78 QEIKRDGNSDFDSAGPNKVLRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN----NVFQALVEFESVNSAQHAKAA 153 (481)
T ss_pred cccccCCCCcccCCCCCceEEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC----CceEEEEEECCHHHHHHHHHH
Confidence 4311 11 112234579999999999999999999999999999998763 347899999999999999999
Q ss_pred hcCceeCC--eeEEEeecCCCCCCC-----cc-----ccc---ccCCC-----Cccc-----------------------
Q psy2618 157 MNGQWLGS--RSIRTNWSTRKPPAM-----TN-----ERK---RQNSH-----TKTI----------------------- 193 (390)
Q Consensus 157 l~~~~~~g--~~i~v~~~~~~~~~~-----~~-----~~~---~~~~~-----~~~~----------------------- 193 (390)
|+|..+.+ +.|+|.|+....-.. .. ... +.... ....
T Consensus 154 Lng~~i~~~~~~l~v~~sk~~~l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~ 233 (481)
T TIGR01649 154 LNGADIYNGCCTLKIEYAKPTRLNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLA 233 (481)
T ss_pred hcCCcccCCceEEEEEEecCCCceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCC
Confidence 99999964 578888876532110 00 000 00000 0000
Q ss_pred ------ccc-----------------------ccccCCCCCcceeEEcCCCC-CCcHHHHHhhhcCCCceeEEEEecC-C
Q psy2618 194 ------TFD-----------------------EVYNQSSPTNCTVYCGGFGK-DLNEELVSKVFSPFGTIVDIRVFKE-K 242 (390)
Q Consensus 194 ------~~~-----------------------~~~~~~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~-~ 242 (390)
... .......+++++|||+||+. .+++++|+++|+.||.|.+|+++++ +
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~~ 313 (481)
T TIGR01649 234 PLAGGDRMGPPHGPPSRYRPAYEAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNKK 313 (481)
T ss_pred cccccccCCCcccCCCCCcccccccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCC
Confidence 000 00001124668999999997 6999999999999999999999977 6
Q ss_pred CeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 243 g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
|+|||+|.+.++|.+|+..||+..+.|+.|+|.+++...
T Consensus 314 g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~~ 352 (481)
T TIGR01649 314 ETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQN 352 (481)
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccccc
Confidence 999999999999999999999999999999999987654
No 8
>KOG0145|consensus
Probab=100.00 E-value=1.1e-40 Score=268.96 Aligned_cols=272 Identities=25% Similarity=0.474 Sum_probs=227.1
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
++.++.|.|.-||.+++++||+.+|...|+|++|++++|+- +-||+||.|.++++|++|+..|||..+..++|+|.+
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 45678899999999999999999999999999999999985 558999999999999999999999999999999999
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCc
Q psy2618 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160 (390)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 160 (390)
+++. .+.-....|||++||..+|..+|+.+|++||.|...+++.|..+|.+||.+||.|+..++|++|++.|+|.
T Consensus 118 ARPS-----s~~Ik~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~ 192 (360)
T KOG0145|consen 118 ARPS-----SDSIKDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQ 192 (360)
T ss_pred ccCC-----hhhhcccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCC
Confidence 9873 34445667999999999999999999999999999999999999999999999999999999999999998
Q ss_pred eeCC--eeEEEeecCCCCCCCcc---------cccccCCCC--cc---------------ccccc------------ccc
Q psy2618 161 WLGS--RSIRTNWSTRKPPAMTN---------ERKRQNSHT--KT---------------ITFDE------------VYN 200 (390)
Q Consensus 161 ~~~g--~~i~v~~~~~~~~~~~~---------~~~~~~~~~--~~---------------~~~~~------------~~~ 200 (390)
.-.| ..|.|+++......... ...+..... .. ..+.. ...
T Consensus 193 ~P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp 272 (360)
T KOG0145|consen 193 KPSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLP 272 (360)
T ss_pred CCCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccC
Confidence 7765 46888887543221100 000000000 00 00000 011
Q ss_pred CCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEE
Q psy2618 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKC 274 (390)
Q Consensus 201 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 274 (390)
.......+|||-||..+++|..|-++|.+||.|..|++++| +||+||.+.+-++|..|+..|||..+.+|.|.|
T Consensus 273 ~~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~rvLQV 352 (360)
T KOG0145|consen 273 GGPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGDRVLQV 352 (360)
T ss_pred CCCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccceEEEE
Confidence 12224568999999999999999999999999999999988 899999999999999999999999999999999
Q ss_pred EecccC
Q psy2618 275 FWGKES 280 (390)
Q Consensus 275 ~~~~~~ 280 (390)
+|...+
T Consensus 353 sFKtnk 358 (360)
T KOG0145|consen 353 SFKTNK 358 (360)
T ss_pred EEecCC
Confidence 997654
No 9
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.8e-39 Score=307.38 Aligned_cols=278 Identities=24% Similarity=0.402 Sum_probs=221.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
.+++.++|||+|||.++++++|+++|+.||.|.+|+++.++. ++|||||+|.+.++|.+||. |++..+.|+.|.|.
T Consensus 85 ~~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~ 163 (457)
T TIGR01622 85 AERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQ 163 (457)
T ss_pred cccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEe
Confidence 345788999999999999999999999999999999998753 68999999999999999996 89999999999998
Q ss_pred ecCCCCCCCC-------CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHH
Q psy2618 80 WASSPGNQPK-------QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152 (390)
Q Consensus 80 ~~~~~~~~~~-------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ 152 (390)
.+........ ......++|||+|||..+++++|+++|+.||.|..|.++.+..+|+++|||||+|.+.++|..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~ 243 (457)
T TIGR01622 164 SSQAEKNRAAKAATHQPGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKE 243 (457)
T ss_pred ecchhhhhhhhcccccCCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHH
Confidence 8754322111 112236899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhcCceeCCeeEEEeecCCCCCCCcccccc----------------------------c---CC---CCc-------
Q psy2618 153 AITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR----------------------------Q---NS---HTK------- 191 (390)
Q Consensus 153 a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~----------------------------~---~~---~~~------- 191 (390)
|++.|++..+.|+.|.|.|+............. . .. ...
T Consensus 244 A~~~l~g~~i~g~~i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (457)
T TIGR01622 244 ALEVMNGFELAGRPIKVGYAQDSTYLLDAANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQ 323 (457)
T ss_pred HHHhcCCcEECCEEEEEEEccCCCccccchhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhc
Confidence 999999999999999999965321110000000 0 00 000
Q ss_pred ---cc-ccc-----------------c--ccc-CCCCCcceeEEcCCCCCCc----------HHHHHhhhcCCCceeEEE
Q psy2618 192 ---TI-TFD-----------------E--VYN-QSSPTNCTVYCGGFGKDLN----------EELVSKVFSPFGTIVDIR 237 (390)
Q Consensus 192 ---~~-~~~-----------------~--~~~-~~~~~~~~l~v~~l~~~~~----------~~~l~~~f~~~g~v~~~~ 237 (390)
.. ... . ... .......+|+|.||-...+ .+||++.|++||.|+.|.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~ 403 (457)
T TIGR01622 324 KLQRDGIIDPNIPSRYATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIY 403 (457)
T ss_pred cccccccccccccccccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEE
Confidence 00 000 0 000 0124567899999954433 368999999999999999
Q ss_pred EecC--CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 238 VFKE--KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 238 ~~~~--~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
+... .|++||+|.+.++|.+|++.|||+.++|+.|.+.|.....
T Consensus 404 v~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~f~gr~i~~~~~~~~~ 449 (457)
T TIGR01622 404 VDTKNSAGKIYLKFSSVDAALAAFQALNGRYFGGKMITAAFVVNDV 449 (457)
T ss_pred EeCCCCceeEEEEECCHHHHHHHHHHhcCcccCCeEEEEEEEcHHH
Confidence 9744 7999999999999999999999999999999999976543
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=100.00 E-value=4.4e-39 Score=304.71 Aligned_cols=267 Identities=18% Similarity=0.277 Sum_probs=212.8
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc--ceeeEeecCCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLE--KEMKVNWASSPG 85 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~ 85 (390)
.+|+|+||+.++++++|+++|+.||.|.+|++.+++ .+++|||+|.+.++|.+|++.|||..+.+ +.|+|.|++...
T Consensus 97 ~~v~v~nl~~~vt~~~L~~~F~~~G~V~~v~i~~~~-~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk~~~ 175 (481)
T TIGR01649 97 LRVIVENPMYPITLDVLYQIFNPYGKVLRIVTFTKN-NVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAKPTR 175 (481)
T ss_pred EEEEEcCCCCCCCHHHHHHHHhccCCEEEEEEEecC-CceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEecCCC
Confidence 479999999999999999999999999999987754 35799999999999999999999999875 578888876411
Q ss_pred C-------C-------------C-----------C---------------------------------------------
Q psy2618 86 N-------Q-------------P-----------K--------------------------------------------- 89 (390)
Q Consensus 86 ~-------~-------------~-----------~--------------------------------------------- 89 (390)
- . . .
T Consensus 176 l~v~~~~~~s~dyt~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (481)
T TIGR01649 176 LNVKYNDDDSRDYTNPDLPGRRDPGLDQTHRQRQPALLGQHPSSYGHDGYSSHGGPLAPLAGGDRMGPPHGPPSRYRPAY 255 (481)
T ss_pred ceeEecccCCCCCcCCCCCCCCCCCcCccccccccccccCCCccCCCcccccCCCCCCcccccccCCCcccCCCCCcccc
Confidence 0 0 0 0
Q ss_pred --------------CCCCCceEEEEcCCCc-ccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHH
Q psy2618 90 --------------QDTSNHYHIFVGDLSP-EIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAI 154 (390)
Q Consensus 90 --------------~~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 154 (390)
......++|||+||++ .+++++|+++|+.||.|..|+++++ .+|||||+|.+.++|..|+
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~-----~~g~afV~f~~~~~A~~Ai 330 (481)
T TIGR01649 256 EAAPLAPAISSYGPAGGGPGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKN-----KKETALIEMADPYQAQLAL 330 (481)
T ss_pred cccccCccccccCCCCCCCCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeC-----CCCEEEEEECCHHHHHHHH
Confidence 0012456999999997 6999999999999999999999886 4799999999999999999
Q ss_pred HHhcCceeCCeeEEEeecCCCCCCCccccc--------ccCCCCcccccc----ccccCCCCCcceeEEcCCCCCCcHHH
Q psy2618 155 TAMNGQWLGSRSIRTNWSTRKPPAMTNERK--------RQNSHTKTITFD----EVYNQSSPTNCTVYCGGFGKDLNEEL 222 (390)
Q Consensus 155 ~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~l~v~~l~~~~~~~~ 222 (390)
..|++..+.|+.|+|.++............ ............ .......+++.+|||+|||.++++++
T Consensus 331 ~~lng~~l~g~~l~v~~s~~~~~~~~~~~~~~~~~~~~~d~~~~~~~r~~~~~~~~~~~~~~ps~~L~v~NLp~~~tee~ 410 (481)
T TIGR01649 331 THLNGVKLFGKPLRVCPSKQQNVQPPREGQLDDGLTSYKDYSSSRNHRFKKPGSANKNNIQPPSATLHLSNIPLSVSEED 410 (481)
T ss_pred HHhCCCEECCceEEEEEcccccccCCCCCcCcCCCcccccccCCccccCCCcccccccccCCCCcEEEEecCCCCCCHHH
Confidence 999999999999999998654221111000 000000000000 00112245678999999999999999
Q ss_pred HHhhhcCCCc--eeEEEEecC----CCeEEEEecCHHHHHHHHHHhcCceecCeE------EEEEecccC
Q psy2618 223 VSKVFSPFGT--IVDIRVFKE----KGYAFVKFTTKETATHAIESIHNTDINGHT------VKCFWGKES 280 (390)
Q Consensus 223 l~~~f~~~g~--v~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~------i~v~~~~~~ 280 (390)
|+++|+.||. |+.+++... +++|||+|.+.++|.+|+..||+..++++. |+|+|+++.
T Consensus 411 L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~~~~~~~~~lkv~fs~~~ 480 (481)
T TIGR01649 411 LKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNEPNGSAPYHLKVSFSTSR 480 (481)
T ss_pred HHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCCCCCCccceEEEEeccCC
Confidence 9999999998 888888754 589999999999999999999999999885 999998764
No 11
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=100.00 E-value=4.2e-39 Score=310.46 Aligned_cols=273 Identities=21% Similarity=0.325 Sum_probs=213.3
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhccc------------CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQI------------GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVF 71 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~------------G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~ 71 (390)
.+..++|||+|||+++++++|+++|+.+ +.|.++.+. ..++||||+|.+.++|..||+ |++..+
T Consensus 172 ~~~~r~lyVgnLp~~~t~~~l~~~F~~~~~~~~~~~~~~~~~v~~~~~~---~~kg~afVeF~~~e~A~~Al~-l~g~~~ 247 (509)
T TIGR01642 172 TRQARRLYVGGIPPEFVEEAVVDFFNDLMIATGYHKAEDGKHVSSVNIN---KEKNFAFLEFRTVEEATFAMA-LDSIIY 247 (509)
T ss_pred CccccEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCCCCCCCceEEEEEC---CCCCEEEEEeCCHHHHhhhhc-CCCeEe
Confidence 4567899999999999999999999975 344555443 357799999999999999995 999999
Q ss_pred ccceeeEeecCCCCCC------------------------CCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEE
Q psy2618 72 LEKEMKVNWASSPGNQ------------------------PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRI 127 (390)
Q Consensus 72 ~g~~l~v~~~~~~~~~------------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 127 (390)
.|..|+|......... ........++|||+|||..+++++|+++|+.||.|..+.+
T Consensus 248 ~g~~l~v~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~ 327 (509)
T TIGR01642 248 SNVFLKIRRPHDYIPVPQITPEVSQKNPDDNAKNVEKLVNSTTVLDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNL 327 (509)
T ss_pred eCceeEecCccccCCccccCCCCCCCCCcccccccccccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEE
Confidence 9999999765432100 0011234579999999999999999999999999999999
Q ss_pred eeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCCCCcccccccCCC--Cccccc-cccccCCCC
Q psy2618 128 VRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSH--TKTITF-DEVYNQSSP 204 (390)
Q Consensus 128 ~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~ 204 (390)
+++..+|.++|||||+|.+.++|..|++.|++..+.|+.|.|.++................. ...... .........
T Consensus 328 ~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 407 (509)
T TIGR01642 328 IKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACVGANQATIDTSNGMAPVTLLAKALSQSILQIGGK 407 (509)
T ss_pred EecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECccCCCCCCccccccccccccccccchhhhccccCC
Confidence 99999999999999999999999999999999999999999999865432221111100000 000000 001112234
Q ss_pred CcceeEEcCCCCC--C--------cHHHHHhhhcCCCceeEEEEecC---------CCeEEEEecCHHHHHHHHHHhcCc
Q psy2618 205 TNCTVYCGGFGKD--L--------NEELVSKVFSPFGTIVDIRVFKE---------KGYAFVKFTTKETATHAIESIHNT 265 (390)
Q Consensus 205 ~~~~l~v~~l~~~--~--------~~~~l~~~f~~~g~v~~~~~~~~---------~g~~fv~f~~~~~a~~a~~~l~~~ 265 (390)
++.+|+|.|+... + ..++|+++|+.||.|++|.|+++ .|++||+|.+.++|.+|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 5678999999642 1 23689999999999999999865 488999999999999999999999
Q ss_pred eecCeEEEEEecccC
Q psy2618 266 DINGHTVKCFWGKES 280 (390)
Q Consensus 266 ~~~g~~i~v~~~~~~ 280 (390)
.|+|+.|.|.|....
T Consensus 488 ~~~gr~v~~~~~~~~ 502 (509)
T TIGR01642 488 KFNDRVVVAAFYGED 502 (509)
T ss_pred EECCeEEEEEEeCHH
Confidence 999999999997654
No 12
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=2.7e-37 Score=289.77 Aligned_cols=171 Identities=25% Similarity=0.483 Sum_probs=153.5
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
...++|||+|||+++++++|+++|+.||+|.+|++..++ .++|||||+|.+.++|++|++.||+..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 456899999999999999999999999999999998875 37899999999999999999999999999999999876
Q ss_pred CCCCCC------CCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHH
Q psy2618 82 SSPGNQ------PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155 (390)
Q Consensus 82 ~~~~~~------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 155 (390)
...... ........++|||+||+.++++++|+++|+.||.|.++++.+++.+++++|||||+|.+.++|.+|++
T Consensus 185 ~~~p~a~~~~~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~ 264 (612)
T TIGR01645 185 SNMPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIA 264 (612)
T ss_pred ccccccccccccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHH
Confidence 432211 11223346799999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCceeCCeeEEEeecCCC
Q psy2618 156 AMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 156 ~l~~~~~~g~~i~v~~~~~~ 175 (390)
.+|+..++|+.|+|.++...
T Consensus 265 amNg~elgGr~LrV~kAi~p 284 (612)
T TIGR01645 265 SMNLFDLGGQYLRVGKCVTP 284 (612)
T ss_pred HhCCCeeCCeEEEEEecCCC
Confidence 99999999999999987753
No 13
>KOG0127|consensus
Probab=100.00 E-value=1.2e-36 Score=269.71 Aligned_cols=274 Identities=26% Similarity=0.409 Sum_probs=219.7
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
.-.||||++||++++.++|.++|+.+|+|..+.+++++. ++||+||+|.-.+++.+|++.+++..|.|+.|.|..+.
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~ 83 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLEEFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAK 83 (678)
T ss_pred CCceEEEecCCCccchhHHHHhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccccccc
Confidence 348999999999999999999999999999999998875 68999999999999999999999999999999999997
Q ss_pred CCCCCC-------------------CCC--CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEE
Q psy2618 83 SPGNQP-------------------KQD--TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141 (390)
Q Consensus 83 ~~~~~~-------------------~~~--~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~af 141 (390)
.+.... ... ..+...|.|+||||.+.+.+|..+|+.||.|.+|.|.+...+ +-.||||
T Consensus 84 ~R~r~e~~~~~e~~~veK~~~q~~~~k~~v~~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dg-klcGFaF 162 (678)
T KOG0127|consen 84 KRARSEEVEKGENKAVEKPIEQKRPTKAKVDLPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDG-KLCGFAF 162 (678)
T ss_pred ccccchhcccccchhhhcccccCCcchhhccCccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCC-CccceEE
Confidence 654322 011 223678999999999999999999999999999999876555 4459999
Q ss_pred EEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCCCCccc----------------------ccc--------------
Q psy2618 142 VSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE----------------------RKR-------------- 185 (390)
Q Consensus 142 v~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~----------------------~~~-------------- 185 (390)
|+|.+..+|..|++.+++..|+||.|-|.|+..+..-.... ...
T Consensus 163 V~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~ede 242 (678)
T KOG0127|consen 163 VQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDE 242 (678)
T ss_pred EEEeeHHHHHHHHHhccCceecCceeEEeeecccccccccchhhhhhhhhccchhhhcccccccccccchhccccccccc
Confidence 99999999999999999999999999999997653211100 000
Q ss_pred c-------------CCCCccccccccc----------------cCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEE
Q psy2618 186 Q-------------NSHTKTITFDEVY----------------NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI 236 (390)
Q Consensus 186 ~-------------~~~~~~~~~~~~~----------------~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 236 (390)
. .........++.. ........+|||+||++++++++|.+.|++||.|..+
T Consensus 243 Ee~D~~se~~ee~~~~Eee~~~vDd~e~S~~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya 322 (678)
T KOG0127|consen 243 EETDGNSEAFEEGEESEEEEDDVDDEESSGKKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYA 322 (678)
T ss_pred ccccccchhhhccccccccccccccccccccCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeE
Confidence 0 0000000000000 0001123689999999999999999999999999999
Q ss_pred EEecC------CCeEEEEecCHHHHHHHHHHh-----cC-ceecCeEEEEEecccC
Q psy2618 237 RVFKE------KGYAFVKFTTKETATHAIESI-----HN-TDINGHTVKCFWGKES 280 (390)
Q Consensus 237 ~~~~~------~g~~fv~f~~~~~a~~a~~~l-----~~-~~~~g~~i~v~~~~~~ 280 (390)
.++.+ +|.|||.|.+..+|..||... .| ..++||.|.|..+-..
T Consensus 323 ~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR~Lkv~~Av~R 378 (678)
T KOG0127|consen 323 IIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGRLLKVTLAVTR 378 (678)
T ss_pred EEEeccCCCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEeccEEeeeeccch
Confidence 98865 799999999999999999976 23 5679999999887654
No 14
>KOG0144|consensus
Probab=100.00 E-value=2.1e-35 Score=254.83 Aligned_cols=274 Identities=23% Similarity=0.428 Sum_probs=221.0
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCee-ecc--ceee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRV-FLE--KEMK 77 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~-~~g--~~l~ 77 (390)
+.+.-+|||+-||...+|+||+++|++||.|.+|.+++|+. ++|+|||+|.+.++|.+|+.+|++.. |.| ..|.
T Consensus 31 d~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvq 110 (510)
T KOG0144|consen 31 DGSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQ 110 (510)
T ss_pred CchhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCccee
Confidence 45677899999999999999999999999999999999986 78999999999999999999998765 555 6677
Q ss_pred EeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHh
Q psy2618 78 VNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 78 v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 157 (390)
|+++....++. ..+++|||+-|+..++|.+++++|.+||.|++|++++|. .+.+||||||.|.+.+.|..|++.|
T Consensus 111 vk~Ad~E~er~----~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~-~~~sRGcaFV~fstke~A~~Aika~ 185 (510)
T KOG0144|consen 111 VKYADGERERI----VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDP-DGLSRGCAFVKFSTKEMAVAAIKAL 185 (510)
T ss_pred ecccchhhhcc----ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecc-cccccceeEEEEehHHHHHHHHHhh
Confidence 77776543332 457899999999999999999999999999999999995 4589999999999999999999999
Q ss_pred cCc-eeCC--eeEEEeecCCCCCCCcccccc-------------------------------------------------
Q psy2618 158 NGQ-WLGS--RSIRTNWSTRKPPAMTNERKR------------------------------------------------- 185 (390)
Q Consensus 158 ~~~-~~~g--~~i~v~~~~~~~~~~~~~~~~------------------------------------------------- 185 (390)
|+. .+.| ..|.|+|++++.+........
T Consensus 186 ng~~tmeGcs~PLVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~ 265 (510)
T KOG0144|consen 186 NGTQTMEGCSQPLVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPP 265 (510)
T ss_pred ccceeeccCCCceEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccC
Confidence 986 4554 578899987764321110000
Q ss_pred ------------------------cCCCCcc------cc-------------ccc-------------------------
Q psy2618 186 ------------------------QNSHTKT------IT-------------FDE------------------------- 197 (390)
Q Consensus 186 ------------------------~~~~~~~------~~-------------~~~------------------------- 197 (390)
....... .. ..+
T Consensus 266 L~~l~a~~~qq~~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~ 345 (510)
T KOG0144|consen 266 LGPLNATQLQQAAALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANY 345 (510)
T ss_pred CCCcchhHHHHHHHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhc
Confidence 0000000 00 000
Q ss_pred ----------------------------------------------------------------------cccCCCCCcc
Q psy2618 198 ----------------------------------------------------------------------VYNQSSPTNC 207 (390)
Q Consensus 198 ----------------------------------------------------------------------~~~~~~~~~~ 207 (390)
......+...
T Consensus 346 n~~~~~a~a~~~sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGa 425 (510)
T KOG0144|consen 346 NLAGGMAGAGTTSPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGA 425 (510)
T ss_pred ccccccccccccCcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCcc
Confidence 0011223345
Q ss_pred eeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 208 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
.|||.+||.+.-+.+|...|.+||.|++.++..+ +.|+||.|++..+|..||..|||..++.++++|...+.+.
T Consensus 426 nlfiyhlPqefgdq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~KrlkVQlk~~~~ 505 (510)
T KOG0144|consen 426 NLFIYHLPQEFGDQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGSKRLKVQLKRDRN 505 (510)
T ss_pred ceeeeeCchhhhhHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhccccceEEeeeccC
Confidence 8999999999999999999999999999888766 6899999999999999999999999999999999887765
Q ss_pred C
Q psy2618 282 N 282 (390)
Q Consensus 282 ~ 282 (390)
+
T Consensus 506 n 506 (510)
T KOG0144|consen 506 N 506 (510)
T ss_pred C
Confidence 4
No 15
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=6.7e-34 Score=254.50 Aligned_cols=168 Identities=29% Similarity=0.487 Sum_probs=152.9
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+....++|||+|||+++++++|+++|+.||+|++|+++++.. +++||||+|.+.++|++||+.|++..+.+++|+|.
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~ 182 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVS 182 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeee
Confidence 456789999999999999999999999999999999988753 67999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcC
Q psy2618 80 WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 159 (390)
++.+.. .....++|||+|||+++++++|+++|++||.|..+.+++++.+++++|||||+|.+.++|++|++.|++
T Consensus 183 ~a~p~~-----~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng 257 (346)
T TIGR01659 183 YARPGG-----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNN 257 (346)
T ss_pred cccccc-----cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCC
Confidence 987532 223457899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeCC--eeEEEeecCCC
Q psy2618 160 QWLGS--RSIRTNWSTRK 175 (390)
Q Consensus 160 ~~~~g--~~i~v~~~~~~ 175 (390)
..+.+ +.|.|.++...
T Consensus 258 ~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 258 VIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CccCCCceeEEEEECCcc
Confidence 98866 68888888654
No 16
>KOG0123|consensus
Probab=100.00 E-value=6.3e-33 Score=249.31 Aligned_cols=271 Identities=24% Similarity=0.476 Sum_probs=226.2
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
..++.+.|||+||+++++.++|.++|+.||.|++|++.++.. ++|| ||+|+++++|.+|++.+||..+.+++|.|...
T Consensus 72 s~rd~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg~~ 150 (369)
T KOG0123|consen 72 SQRDPSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVGLF 150 (369)
T ss_pred hccCCceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEeec
Confidence 455666799999999999999999999999999999998865 7889 99999999999999999999999999999988
Q ss_pred CCCCCCCCC---CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc
Q psy2618 82 SSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158 (390)
Q Consensus 82 ~~~~~~~~~---~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 158 (390)
.....+... .......++|.+++.+.+++.|..+|..+|.|.++.++.+..+ ++++|+||.|.+.++|..|++.++
T Consensus 151 ~~~~er~~~~~~~~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g-~~~~~gfv~f~~~e~a~~av~~l~ 229 (369)
T KOG0123|consen 151 ERKEEREAPLGEYKKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIG-KSKGFGFVNFENPEDAKKAVETLN 229 (369)
T ss_pred cchhhhcccccchhhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCC-CCCCccceeecChhHHHHHHHhcc
Confidence 776554332 2334567999999999999999999999999999999998554 699999999999999999999999
Q ss_pred CceeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEE
Q psy2618 159 GQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238 (390)
Q Consensus 159 ~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~ 238 (390)
+....+..+.|..+..+............. .............|||.|++..++++.|+..|+.||.|..+++
T Consensus 230 ~~~~~~~~~~V~~aqkk~e~~~~l~~~~~~-------~~~~~~~~~~~~nl~vknld~~~~~e~L~~~f~~~GeI~s~kv 302 (369)
T KOG0123|consen 230 GKIFGDKELYVGRAQKKSEREAELKRKFEQ-------EFAKRSVSLQGANLYVKNLDETLSDEKLRKIFSSFGEITSAKV 302 (369)
T ss_pred CCcCCccceeecccccchhhHHHHhhhhHh-------hhhhccccccccccccccCccccchhHHHHHHhcccceeeEEE
Confidence 999999999998776532211111110000 0000111234456999999999999999999999999999988
Q ss_pred ecC-----CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 239 FKE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 239 ~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
..+ +|++||+|.+.++|.+|+..+++..+.++.|.|.++.....
T Consensus 303 ~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 303 MVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred EeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhcc
Confidence 865 89999999999999999999999999999999988874443
No 17
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=8.4e-32 Score=240.99 Aligned_cols=168 Identities=24% Similarity=0.496 Sum_probs=151.0
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||+++++++|+++|+.||.|++|+|++|..+++++|||||+|.+.++|++|++.|++..+.++.|+|
T Consensus 102 ~~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V 181 (346)
T TIGR01659 102 DTNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKV 181 (346)
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeee
Confidence 34556889999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CC
Q psy2618 170 NWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KG 243 (390)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g 243 (390)
.++.+.... ...++|||+||+..+++++|+++|++||.|++++++++ ++
T Consensus 182 ~~a~p~~~~-------------------------~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG 236 (346)
T TIGR01659 182 SYARPGGES-------------------------IKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRG 236 (346)
T ss_pred ecccccccc-------------------------cccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccce
Confidence 987643210 11346999999999999999999999999999999976 48
Q ss_pred eEEEEecCHHHHHHHHHHhcCceecC--eEEEEEecccCCC
Q psy2618 244 YAFVKFTTKETATHAIESIHNTDING--HTVKCFWGKESEN 282 (390)
Q Consensus 244 ~~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~~ 282 (390)
+|||+|.+.++|.+|++.||+..+.+ +.|+|.+++....
T Consensus 237 ~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~~~ 277 (346)
T TIGR01659 237 VAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEHGK 277 (346)
T ss_pred EEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcccc
Confidence 99999999999999999999998866 7899999887643
No 18
>KOG0123|consensus
Probab=100.00 E-value=3.5e-32 Score=244.46 Aligned_cols=239 Identities=29% Similarity=0.528 Sum_probs=211.2
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQ 87 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 87 (390)
..|||+ ++++++.|.++|+.+|+|+++++.+|-++-|||||.|.++++|++||+++|...+.|++++|.|+......
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~rd~~~ 78 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQRDPSL 78 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhccCCce
Confidence 468898 89999999999999999999999988866689999999999999999999999999999999999753222
Q ss_pred CCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 88 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
|||.||+++++..+|.++|+.||.|.+|+++.+... ++|| ||+|.+.++|.+|++.++|..+.++.|
T Consensus 79 ----------~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g--~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki 145 (369)
T KOG0123|consen 79 ----------VFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG--SKGY-FVQFESEESAKKAIEKLNGMLLNGKKI 145 (369)
T ss_pred ----------eeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC--ceee-EEEeCCHHHHHHHHHHhcCcccCCCee
Confidence 999999999999999999999999999999999554 8999 999999999999999999999999999
Q ss_pred EEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-----C
Q psy2618 168 RTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----K 242 (390)
Q Consensus 168 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~ 242 (390)
.|.....+......... . ...-+.++|.+++.+++++.|..+|..+|.|..+.++++ +
T Consensus 146 ~vg~~~~~~er~~~~~~-~----------------~~~~t~v~vk~~~~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~ 208 (369)
T KOG0123|consen 146 YVGLFERKEEREAPLGE-Y----------------KKRFTNVYVKNLEEDSTDEELKDLFSAYGSITSVAVMRDSIGKSK 208 (369)
T ss_pred EEeeccchhhhcccccc-h----------------hhhhhhhheeccccccchHHHHHhhcccCcceEEEEeecCCCCCC
Confidence 99887665443322221 1 111234899999999999999999999999999999975 7
Q ss_pred CeEEEEecCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 243 g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
+++||.|.+.++|.+|+..|++..+.++.+.|.-+..
T Consensus 209 ~~gfv~f~~~e~a~~av~~l~~~~~~~~~~~V~~aqk 245 (369)
T KOG0123|consen 209 GFGFVNFENPEDAKKAVETLNGKIFGDKELYVGRAQK 245 (369)
T ss_pred CccceeecChhHHHHHHHhccCCcCCccceeeccccc
Confidence 9999999999999999999999999999888876655
No 19
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.97 E-value=2.9e-30 Score=242.59 Aligned_cols=175 Identities=29% Similarity=0.510 Sum_probs=150.8
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
...++|||+||++++++++|+++|+.||.|.+|.++.|+.+|+++|||||+|.+.++|.+|++.+++..+.|+.|+|.+.
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp 184 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRP 184 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccc
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred CCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEE
Q psy2618 173 TRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAF 246 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~f 246 (390)
.......... +.........++|||+||+.++++++|+++|+.||.|+++++.++ |||||
T Consensus 185 ~~~p~a~~~~--------------~~~~~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGF 250 (612)
T TIGR01645 185 SNMPQAQPII--------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGF 250 (612)
T ss_pred cccccccccc--------------ccccccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEE
Confidence 4322111000 000111223467999999999999999999999999999999865 79999
Q ss_pred EEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 247 VKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 247 v~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
|+|.+.++|.+|++.||+..++|+.|+|.++..+.
T Consensus 251 VeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 251 IEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred EEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 99999999999999999999999999999987653
No 20
>KOG0147|consensus
Probab=99.97 E-value=3.7e-31 Score=236.16 Aligned_cols=279 Identities=22% Similarity=0.335 Sum_probs=216.6
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.+|++.++||+--|+..+++.+|++||+.+|+|.+|+++.|+. ++|.|||+|.+.+.+-.|| .|.|..+.|.+|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 4678889999999999999999999999999999999998864 6799999999999999999 58999999999999
Q ss_pred eecCCCCCCC---------CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHH
Q psy2618 79 NWASSPGNQP---------KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149 (390)
Q Consensus 79 ~~~~~~~~~~---------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~ 149 (390)
...-...... ..-..+-..|+|+||.+++++++|+.+|+.||.|+.|.+.+|..||+++||+||+|.+.++
T Consensus 253 q~sEaeknr~a~~s~a~~~k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ 332 (549)
T KOG0147|consen 253 QLSEAEKNRAANASPALQGKGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKED 332 (549)
T ss_pred cccHHHHHHHHhccccccccccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHH
Confidence 9774322211 1111222339999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCceeCCeeEEEeecCCCCCCCcc---cccc-----cCCC--Ccc---------------------------
Q psy2618 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTN---ERKR-----QNSH--TKT--------------------------- 192 (390)
Q Consensus 150 a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~---~~~~-----~~~~--~~~--------------------------- 192 (390)
|++|++.||+.++.|+.|+|............ .... .... ...
T Consensus 333 ar~a~e~lngfelAGr~ikV~~v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~ 412 (549)
T KOG0147|consen 333 ARKALEQLNGFELAGRLIKVSVVTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLL 412 (549)
T ss_pred HHHHHHHhccceecCceEEEEEeeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhc
Confidence 99999999999999999998765433221111 0000 0000 000
Q ss_pred ------ccccc----cccCCC-------CCcceeEEcCCCCC--Cc--------HHHHHhhhcCCCceeEEEEecCC-Ce
Q psy2618 193 ------ITFDE----VYNQSS-------PTNCTVYCGGFGKD--LN--------EELVSKVFSPFGTIVDIRVFKEK-GY 244 (390)
Q Consensus 193 ------~~~~~----~~~~~~-------~~~~~l~v~~l~~~--~~--------~~~l~~~f~~~g~v~~~~~~~~~-g~ 244 (390)
..... ...... .++-++.+.|+=.. .| .+|+.+.+++||+|.+|.+.++. |+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~ 492 (549)
T KOG0147|consen 413 AKLASAAQFNGVVRVRSVDPADASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGC 492 (549)
T ss_pred cccchHHhhcCCcCccccCccccccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCce
Confidence 00000 000001 23445556665211 11 36788888999999999999886 99
Q ss_pred EEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 245 ~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
.||.|.+.+.|..|+++|||.||.|+.|+..|-....
T Consensus 493 VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~~~~ 529 (549)
T KOG0147|consen 493 VYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLPLER 529 (549)
T ss_pred EEEecCcHHHHHHHHHHHhhhhhccceeEEEEeehhh
Confidence 9999999999999999999999999999999876554
No 21
>KOG0110|consensus
Probab=99.97 E-value=7.9e-30 Score=233.80 Aligned_cols=260 Identities=22% Similarity=0.391 Sum_probs=214.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+++..+.|+|+|||..+..++|.+.|..||+|..|.+- ...-.|+|+|.+..+|..|.+.|....+....+.+.|+.
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt~~F~~fG~i~rvllp---~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyle~aP 457 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELTEAFLRFGEIGRVLLP---PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYLEWAP 457 (725)
T ss_pred hhhhcceeeeccCccccccHHHHHHhhcccccceeecC---cccceeeeeecCccchHHHHHHhchhhhccCccccccCh
Confidence 46778999999999999999999999999999988443 222369999999999999999999999888888888874
Q ss_pred CCCCC-------------C-----------------CC---------------CCCCceEEEEcCCCcccCHHHHHHHhC
Q psy2618 83 SPGNQ-------------P-----------------KQ---------------DTSNHYHIFVGDLSPEIETQTLKEAFA 117 (390)
Q Consensus 83 ~~~~~-------------~-----------------~~---------------~~~~~~~l~v~nl~~~~~~~~l~~~f~ 117 (390)
..... . .. .....++|||.||+++++.++|...|.
T Consensus 458 ~dvf~~~pka~~~~~e~~~~~ee~~~Er~s~~d~~v~eD~d~te~ss~a~~a~~~~~~t~lfvkNlnf~Tt~e~l~~~F~ 537 (725)
T KOG0110|consen 458 EDVFTEDPKADDLSAESRSKMEENPSERVSAEDGQVEEDKDPTEESSLARVAEDEETETKLFVKNLNFDTTLEDLEDLFS 537 (725)
T ss_pred hhhccCCccccccccccccccccCcceecccccccccccCCccccccchhhhhccccchhhhhhcCCcccchhHHHHHHH
Confidence 21100 0 00 001134599999999999999999999
Q ss_pred CCCCeeEEEEeeCCCCC---CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCCCCcccccccCCCCcccc
Q psy2618 118 PFGEISNCRIVRDPQTL---KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194 (390)
Q Consensus 118 ~~G~i~~~~~~~~~~~g---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~ 194 (390)
..|.|.++.|...+... .+.|||||+|.+.++|..|++.|+|..++|+.|.|.++..++..... ..
T Consensus 538 k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k~~~~~g-K~---------- 606 (725)
T KOG0110|consen 538 KQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENKPASTVG-KK---------- 606 (725)
T ss_pred hcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCccccccc-cc----------
Confidence 99999999876554331 25699999999999999999999999999999999998733222111 00
Q ss_pred ccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceec
Q psy2618 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDIN 268 (390)
Q Consensus 195 ~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~ 268 (390)
......+++|+|+|||...+..+++.+|..||.+++|++++. +|||||+|-+..+|.+|++.|....+.
T Consensus 607 -----~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHly 681 (725)
T KOG0110|consen 607 -----KSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLY 681 (725)
T ss_pred -----cccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhccccee
Confidence 011223568999999999999999999999999999999976 899999999999999999999999999
Q ss_pred CeEEEEEecccCC
Q psy2618 269 GHTVKCFWGKESE 281 (390)
Q Consensus 269 g~~i~v~~~~~~~ 281 (390)
||+|.+.|++...
T Consensus 682 GRrLVLEwA~~d~ 694 (725)
T KOG0110|consen 682 GRRLVLEWAKSDN 694 (725)
T ss_pred chhhheehhccch
Confidence 9999999998764
No 22
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.97 E-value=3.4e-29 Score=230.52 Aligned_cols=171 Identities=30% Similarity=0.516 Sum_probs=149.3
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeecc--ceeeEee
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLE--KEMKVNW 80 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~ 80 (390)
..++|||+|||.++++++|+++|+.||.|..+++..+.. ++|||||+|++.++|++|++.||+..+.| .+|.|.+
T Consensus 88 ~~~~l~v~~l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~ 167 (352)
T TIGR01661 88 KGANLYVSGLPKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKF 167 (352)
T ss_pred ccceEEECCccccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEE
Confidence 567899999999999999999999999999999987653 67899999999999999999999998877 5678887
Q ss_pred cCCCCCCCC-----------------------------------------------------------------------
Q psy2618 81 ASSPGNQPK----------------------------------------------------------------------- 89 (390)
Q Consensus 81 ~~~~~~~~~----------------------------------------------------------------------- 89 (390)
+........
T Consensus 168 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 247 (352)
T TIGR01661 168 ANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQQHAAQRASPP 247 (352)
T ss_pred CCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhcccccccccccCCCc
Confidence 754321000
Q ss_pred ----------------CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHH
Q psy2618 90 ----------------QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENA 153 (390)
Q Consensus 90 ----------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a 153 (390)
.......+|||+|||+++++++|+++|++||.|.++++++|+.+++++|||||+|.+.++|..|
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~~~A~~A 327 (352)
T TIGR01661 248 ATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNYDEAAMA 327 (352)
T ss_pred cccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCHHHHHHH
Confidence 0001123699999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCceeCCeeEEEeecCCCC
Q psy2618 154 ITAMNGQWLGSRSIRTNWSTRKP 176 (390)
Q Consensus 154 ~~~l~~~~~~g~~i~v~~~~~~~ 176 (390)
++.|+|..++||.|+|.|...+.
T Consensus 328 i~~lnG~~~~gr~i~V~~~~~~~ 350 (352)
T TIGR01661 328 ILSLNGYTLGNRVLQVSFKTNKA 350 (352)
T ss_pred HHHhCCCEECCeEEEEEEccCCC
Confidence 99999999999999999998664
No 23
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=6.4e-29 Score=233.39 Aligned_cols=223 Identities=17% Similarity=0.256 Sum_probs=173.8
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCC-ceEEEEeec----CCCCCeEEEEEccHHHHHHHHHHhcC--eeecccee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIRE----PGNDPYAFLEFVHHTVAATALAAMNK--RVFLEKEM 76 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~-v~~v~~~~~----~~~~g~afV~F~~~~~A~~a~~~l~~--~~~~g~~l 76 (390)
..+.++|||+|||.++++++|.+.|+.++. ++++.+... ..+++||||+|++.++|..|++.|+. ..+.|+.|
T Consensus 135 S~~~~rLFVgNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l~Gr~I 214 (578)
T TIGR01648 135 SVDNCRLFVGGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHVI 214 (578)
T ss_pred cccCceeEeecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEecCceE
Confidence 345789999999999999999999999864 444444322 13679999999999999999998763 45789999
Q ss_pred eEeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCC--CCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHH
Q psy2618 77 KVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF--GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAI 154 (390)
Q Consensus 77 ~v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~--G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~ 154 (390)
.|+|+.+............++|||+||+.++++++|+++|+.| |.|+.|.++ ++||||+|.+.++|.+|+
T Consensus 215 ~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~--------rgfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 215 AVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKI--------RDYAFVHFEDREDAVKAM 286 (578)
T ss_pred EEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEee--------cCeEEEEeCCHHHHHHHH
Confidence 9999987655444445567899999999999999999999999 999998764 459999999999999999
Q ss_pred HHhcCceeCCeeEEEeecCCCCCCCcccccccCCC---CccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCC
Q psy2618 155 TAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSH---TKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG 231 (390)
Q Consensus 155 ~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g 231 (390)
+.|++..|.|+.|+|.|+.+..........+.... .............++...+++++|++.+.+++.+.++|...|
T Consensus 287 ~~lnG~~i~Gr~I~V~~Akp~~~~~~~~~~rg~gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~~~~~~~~~~~~f~~~g 366 (578)
T TIGR01648 287 DELNGKELEGSEIEVTLAKPVDKKSYVRYTRGTGGRGKERQAARQSLGQVYDPASRSLAYEDYYYHPPYAPSLHFPRMPG 366 (578)
T ss_pred HHhCCCEECCEEEEEEEccCCCcccccccccccCCCcccccccccccCcccCccccccccccccccccccchhhccccCc
Confidence 99999999999999999987644321111111000 000111122234455678899999999999999999999988
Q ss_pred cee
Q psy2618 232 TIV 234 (390)
Q Consensus 232 ~v~ 234 (390)
.|.
T Consensus 367 ~~~ 369 (578)
T TIGR01648 367 PIR 369 (578)
T ss_pred ccc
Confidence 754
No 24
>KOG0144|consensus
Probab=99.96 E-value=2.6e-29 Score=217.29 Aligned_cols=169 Identities=27% Similarity=0.526 Sum_probs=147.8
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCce-eCC--eeEEE
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW-LGS--RSIRT 169 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g--~~i~v 169 (390)
.+.-+|||+-||+.|+|+||+++|++||.|.+|.+++|+.++.++|||||.|.+.++|.+|+.+|++.. +-| ..|.|
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqv 111 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQV 111 (510)
T ss_pred chhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceee
Confidence 456789999999999999999999999999999999999999999999999999999999999998764 444 56777
Q ss_pred eecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-----CCe
Q psy2618 170 NWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGY 244 (390)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~ 244 (390)
++++.+.... ..+.+|||+-|+..++|.+++++|++||.|+++.|+++ ||+
T Consensus 112 k~Ad~E~er~------------------------~~e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGc 167 (510)
T KOG0144|consen 112 KYADGERERI------------------------VEERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGC 167 (510)
T ss_pred cccchhhhcc------------------------ccchhhhhhhccccccHHHHHHHHHhhCccchhhheecccccccce
Confidence 7776543221 22356999999999999999999999999999999987 899
Q ss_pred EEEEecCHHHHHHHHHHhcCce-ecC--eEEEEEecccCCCCCC
Q psy2618 245 AFVKFTTKETATHAIESIHNTD-ING--HTVKCFWGKESENNST 285 (390)
Q Consensus 245 ~fv~f~~~~~a~~a~~~l~~~~-~~g--~~i~v~~~~~~~~~~~ 285 (390)
+||+|.+.|.|..|++.||+.. +.| ..|.|+|++.++.+..
T Consensus 168 aFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~ 211 (510)
T KOG0144|consen 168 AFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDG 211 (510)
T ss_pred eEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchH
Confidence 9999999999999999999973 544 6899999988876543
No 25
>KOG0124|consensus
Probab=99.96 E-value=3.1e-28 Score=206.22 Aligned_cols=169 Identities=25% Similarity=0.497 Sum_probs=151.4
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
-|+|||+.|.++..|+.|+..|..||+|.+|.+..|.- +||||||+|+-+|.|..|++.+|+..+.|+.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 47999999999999999999999999999999988863 789999999999999999999999999999999985443
Q ss_pred CCCCC------CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHh
Q psy2618 84 PGNQP------KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 84 ~~~~~------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 157 (390)
-.... .++....++|||..+.++.+++||+..|+.||+|..|.+.+++.++.++||+|++|.+..+-.+|+..+
T Consensus 193 mpQAQpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasM 272 (544)
T KOG0124|consen 193 MPQAQPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASM 272 (544)
T ss_pred CcccchHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhc
Confidence 22111 124456789999999999999999999999999999999999998889999999999999999999999
Q ss_pred cCceeCCeeEEEeecCCC
Q psy2618 158 NGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 158 ~~~~~~g~~i~v~~~~~~ 175 (390)
|-..++|..|+|..+...
T Consensus 273 NlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 273 NLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred chhhcccceEecccccCC
Confidence 999999999999876543
No 26
>KOG0127|consensus
Probab=99.96 E-value=3.4e-28 Score=216.22 Aligned_cols=258 Identities=26% Similarity=0.375 Sum_probs=194.3
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
.+.-+|.|+|||+.+.+.+|+.+|+.||.|++|.|-+.+. -.|||||.|.+..+|..|++.+|+..+.|++|-|.|+-
T Consensus 115 ~~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV 194 (678)
T KOG0127|consen 115 LPKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAV 194 (678)
T ss_pred CccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeec
Confidence 3477899999999999999999999999999999875544 34899999999999999999999999999999999994
Q ss_pred CCCC----------------------C-C------------------CC-------------------------------
Q psy2618 83 SPGN----------------------Q-P------------------KQ------------------------------- 90 (390)
Q Consensus 83 ~~~~----------------------~-~------------------~~------------------------------- 90 (390)
+... . . .+
T Consensus 195 ~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~~~ 274 (678)
T KOG0127|consen 195 DKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSGKK 274 (678)
T ss_pred ccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccccC
Confidence 3210 0 0 00
Q ss_pred -------------CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHh
Q psy2618 91 -------------DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 91 -------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 157 (390)
+.....+|||+|||+++++++|.+.|+.||.|....++.++.|++++|.|||.|.+..++..||+..
T Consensus 275 ~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~~A 354 (678)
T KOG0127|consen 275 ESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIEAA 354 (678)
T ss_pred cccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHHhc
Confidence 0000379999999999999999999999999999999999999999999999999999999999876
Q ss_pred c-----C-ceeCCeeEEEeecCCCCCCCcccccccCC----------CC------ccc-----cccc-------------
Q psy2618 158 N-----G-QWLGSRSIRTNWSTRKPPAMTNERKRQNS----------HT------KTI-----TFDE------------- 197 (390)
Q Consensus 158 ~-----~-~~~~g~~i~v~~~~~~~~~~~~~~~~~~~----------~~------~~~-----~~~~------------- 197 (390)
+ + ..++||.|.|..+..+............. .. ... +..+
T Consensus 355 spa~e~g~~ll~GR~Lkv~~Av~RkeA~dmeqkk~~Kk~~gkrNLyLa~EG~I~~gt~aAeglS~~Dm~kRer~~~~k~k 434 (678)
T KOG0127|consen 355 SPASEDGSVLLDGRLLKVTLAVTRKEAADMEQKKKRKKPKGKRNLYLAREGLIRDGTPAAEGLSATDMAKRERIAERKRK 434 (678)
T ss_pred CccCCCceEEEeccEEeeeeccchHHHHHHHHHhhhhccCCccceeeeccCccccCChhhcccchhhHHHHHHHHHHHHH
Confidence 2 3 67899999999887653321110000000 00 000 0000
Q ss_pred --cccCCCCCcceeEEcCCCCCCcHHHHHhhhcC----C-Cce-eEEEEecC---------CCeEEEEecCHHHHHHHHH
Q psy2618 198 --VYNQSSPTNCTVYCGGFGKDLNEELVSKVFSP----F-GTI-VDIRVFKE---------KGYAFVKFTTKETATHAIE 260 (390)
Q Consensus 198 --~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~----~-g~v-~~~~~~~~---------~g~~fv~f~~~~~a~~a~~ 260 (390)
.......+.+.|.|.|||..+++..|..++.. | +.+ ..++.++. .|++|+.|..++.|.+|+.
T Consensus 435 ~lknpnlhlSrtRL~i~Nlpramn~KqL~~Ll~~Av~~~at~~kk~~R~~~~le~~~k~~s~g~aF~~f~EhEhalkalk 514 (678)
T KOG0127|consen 435 KLKNPNLHLSRTRLVIRNLPRAMNPKQLNRLLRDAVTGFATKVKKCIRQIKFLEEEKKNYSEGYAFVGFTEHEHALKALK 514 (678)
T ss_pred hhcCCceeeehhhhhhhcCccccCHHHHHHHHHHHHhhhhhhcchhhhhhhhHHhhhhcccccccccCccHHHHHHHhhh
Confidence 01122234567999999999999999887743 2 222 22222221 6899999999999999998
Q ss_pred Hh
Q psy2618 261 SI 262 (390)
Q Consensus 261 ~l 262 (390)
.+
T Consensus 515 ~~ 516 (678)
T KOG0127|consen 515 VL 516 (678)
T ss_pred cc
Confidence 65
No 27
>KOG0148|consensus
Probab=99.96 E-value=6.4e-28 Score=196.53 Aligned_cols=163 Identities=29% Similarity=0.598 Sum_probs=148.7
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.-.|||+.|...++.++|++.|..||+|.++++++|.. +|||+||.|.+.++|++||..|||.=|.++.|+-.|+..
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATR 141 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATR 141 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccccc
Confidence 44699999999999999999999999999999999974 789999999999999999999999999999999999976
Q ss_pred CCCCC-----------CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHH
Q psy2618 84 PGNQP-----------KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152 (390)
Q Consensus 84 ~~~~~-----------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ 152 (390)
+..+. .....++++|||+||+.-++|++|++.|+.||.|.+|++.++ +||+||.|.+.|+|.+
T Consensus 142 Kp~e~n~~~ltfdeV~NQssp~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~------qGYaFVrF~tkEaAah 215 (321)
T KOG0148|consen 142 KPSEMNGKPLTFDEVYNQSSPDNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKD------QGYAFVRFETKEAAAH 215 (321)
T ss_pred CccccCCCCccHHHHhccCCCCCceEEeCCcCccccHHHHHHhcccCCcceEEEEecc------cceEEEEecchhhHHH
Confidence 54321 123456899999999999999999999999999999999986 8999999999999999
Q ss_pred HHHHhcCceeCCeeEEEeecCCC
Q psy2618 153 AITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 153 a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
||..+|+.++.|..+++.|....
T Consensus 216 AIv~mNntei~G~~VkCsWGKe~ 238 (321)
T KOG0148|consen 216 AIVQMNNTEIGGQLVRCSWGKEG 238 (321)
T ss_pred HHHHhcCceeCceEEEEeccccC
Confidence 99999999999999999998644
No 28
>KOG0117|consensus
Probab=99.95 E-value=5.7e-27 Score=203.84 Aligned_cols=199 Identities=22% Similarity=0.380 Sum_probs=162.2
Q ss_pred EEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC-----CCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCee
Q psy2618 49 AFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP-----GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS 123 (390)
Q Consensus 49 afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~-----~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~ 123 (390)
+.-...+.++|.++|.+-.+ -+|.|+....+ ..-.......-+.|||++||.++.|++|..+|++.|+|.
T Consensus 37 ~~~~~~~~eaal~al~E~tg-----y~l~ve~gqrk~ggPpP~weg~~p~~G~EVfvGkIPrD~~EdeLvplfEkiG~I~ 111 (506)
T KOG0117|consen 37 GVAGVQSEEAALKALLERTG-----YTLVVENGQRKYGGPPPGWEGPPPPRGCEVFVGKIPRDVFEDELVPLFEKIGKIY 111 (506)
T ss_pred cccccccHHHHHHHHHHhcC-----ceEEEeccccccCCCCCcccCCCCCCCceEEecCCCccccchhhHHHHHhcccee
Confidence 33344557888888765333 33444444322 122222335568999999999999999999999999999
Q ss_pred EEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee-CCeeEEEeecCCCCCCCcccccccCCCCccccccccccCC
Q psy2618 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL-GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQS 202 (390)
Q Consensus 124 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~-~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (390)
++++|.|+.+|.+||||||+|++.++|++|++.||+.+| .|+.|.|+.+..+
T Consensus 112 elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Svan--------------------------- 164 (506)
T KOG0117|consen 112 ELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSVAN--------------------------- 164 (506)
T ss_pred eEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEeeec---------------------------
Confidence 999999999999999999999999999999999999987 6899999877543
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCC-ceeEEEEec-------CCCeEEEEecCHHHHHHHHHHhc--CceecCeEE
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIRVFK-------EKGYAFVKFTTKETATHAIESIH--NTDINGHTV 272 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~-------~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~i 272 (390)
|+|||||||.+.++++|++.|++.+ .|++|.+.+ +||||||+|.++..|..|-+.|- ...+.|+.+
T Consensus 165 ----~RLFiG~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrKl~~g~~klwgn~~ 240 (506)
T KOG0117|consen 165 ----CRLFIGNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRKLMPGKIKLWGNAI 240 (506)
T ss_pred ----ceeEeccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhhccCCceeecCCcc
Confidence 6799999999999999999999987 578887773 48999999999999999998873 335789999
Q ss_pred EEEecccCCCC
Q psy2618 273 KCFWGKESENN 283 (390)
Q Consensus 273 ~v~~~~~~~~~ 283 (390)
.|.||.+....
T Consensus 241 tVdWAep~~e~ 251 (506)
T KOG0117|consen 241 TVDWAEPEEEP 251 (506)
T ss_pred eeeccCcccCC
Confidence 99999887643
No 29
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=1.3e-26 Score=220.52 Aligned_cols=175 Identities=25% Similarity=0.480 Sum_probs=149.9
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+|||..+++++|+++|+.||.|.+|.++.++.+++++|||||+|.+.++|.+|+. +++..+.|+.|.|.+
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~ 164 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQS 164 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEee
Confidence 4457899999999999999999999999999999999999999999999999999999999995 899999999999987
Q ss_pred cCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeE
Q psy2618 172 STRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYA 245 (390)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~ 245 (390)
+.............. ....+..++|||+||+..+++++|+++|+.||.|..|.++++ +|+|
T Consensus 165 ~~~~~~~~~~~~~~~-------------~~~~p~~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~a 231 (457)
T TIGR01622 165 SQAEKNRAAKAATHQ-------------PGDIPNFLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFG 231 (457)
T ss_pred cchhhhhhhhccccc-------------CCCCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEE
Confidence 654322111100000 011223678999999999999999999999999999999854 6899
Q ss_pred EEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 246 FVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 246 fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
||+|.+.++|.+|+..|+|..+.|+.|.|.|+...
T Consensus 232 fV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 232 FIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred EEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 99999999999999999999999999999998744
No 30
>KOG0131|consensus
Probab=99.95 E-value=9.1e-27 Score=178.98 Aligned_cols=171 Identities=35% Similarity=0.589 Sum_probs=152.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+-....||||+||+..++++.|.++|-+.|+|+++.+-+++- .+|||||+|.++|+|+-|++-||...+.|++|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 334568999999999999999999999999999999987763 67999999999999999999999999999999999
Q ss_pred ecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCee-EEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc
Q psy2618 80 WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS-NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 158 (390)
.+.... ........|||+||.+++++..|.+.|+.||.+. .-.++++..||.++||+||.|.+.+.+..|++.++
T Consensus 85 kas~~~----~nl~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~n 160 (203)
T KOG0131|consen 85 KASAHQ----KNLDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMN 160 (203)
T ss_pred eccccc----ccccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhc
Confidence 987322 2333347899999999999999999999999954 45789999999999999999999999999999999
Q ss_pred CceeCCeeEEEeecCCCCC
Q psy2618 159 GQWLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 159 ~~~~~g~~i~v~~~~~~~~ 177 (390)
+..+.++.+.|.++..+..
T Consensus 161 gq~l~nr~itv~ya~k~~~ 179 (203)
T KOG0131|consen 161 GQYLCNRPITVSYAFKKDT 179 (203)
T ss_pred cchhcCCceEEEEEEecCC
Confidence 9999999999999876543
No 31
>KOG4211|consensus
Probab=99.94 E-value=8.6e-25 Score=193.05 Aligned_cols=268 Identities=22% Similarity=0.286 Sum_probs=194.3
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeec-CCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~-~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
+..--|.+++|||++|++||.+||+.++ |.++.+.+. .+..|-|||+|.++|++++|+++ +...+..+.|.|-.+..
T Consensus 8 ~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~~ 85 (510)
T KOG4211|consen 8 STAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAGG 85 (510)
T ss_pred CcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccCC
Confidence 4455689999999999999999999986 788877766 55788999999999999999985 77778889999988754
Q ss_pred CCCC----C--CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeE-EEEeeCCCCCCCCcEEEEEecCHHHHHHHHHH
Q psy2618 84 PGNQ----P--KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN-CRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156 (390)
Q Consensus 84 ~~~~----~--~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 156 (390)
.... + ..+......|.+++||+.++++||.+||+..-.|.. |.++.+ ..+++.|.|||+|.+.+.|+.|+..
T Consensus 86 ~e~d~~~~~~g~~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d-~rgR~tGEAfVqF~sqe~ae~Al~r 164 (510)
T KOG4211|consen 86 AEADWVMRPGGPNSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMD-QRGRPTGEAFVQFESQESAEIALGR 164 (510)
T ss_pred ccccccccCCCCCCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeecc-CCCCcccceEEEecCHHHHHHHHHH
Confidence 3221 1 112245678999999999999999999998876666 434444 4567999999999999999999976
Q ss_pred hcCceeCCeeEEEeecCCCCCCCcc----------------ccccc-------CC--C--Cc------------------
Q psy2618 157 MNGQWLGSRSIRTNWSTRKPPAMTN----------------ERKRQ-------NS--H--TK------------------ 191 (390)
Q Consensus 157 l~~~~~~g~~i~v~~~~~~~~~~~~----------------~~~~~-------~~--~--~~------------------ 191 (390)
+.+.|+.|-|.|..++........ ...+. .. . ..
T Consensus 165 -hre~iGhRYIEvF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g~~~~g~~g~~~~~~~~ 243 (510)
T KOG4211|consen 165 -HRENIGHRYIEVFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYGAGGEGYYGFSRYPSLQ 243 (510)
T ss_pred -HHHhhccceEEeehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccccccCCccccccCcccc
Confidence 778888888888765422100000 00000 00 0 00
Q ss_pred c----------------cc--ccc-----cccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCce-eEEEEecC---CCe
Q psy2618 192 T----------------IT--FDE-----VYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTI-VDIRVFKE---KGY 244 (390)
Q Consensus 192 ~----------------~~--~~~-----~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~---~g~ 244 (390)
. .. ... ...........+..++||...++.++..+|+..-.+ +.+.+-.+ .|.
T Consensus 244 d~~~~gs~~~~~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGE 323 (510)
T KOG4211|consen 244 DYGNFGSYGGGRDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGE 323 (510)
T ss_pred ccccccccccccccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCc
Confidence 0 00 000 000111123678999999999999999999986655 34444433 789
Q ss_pred EEEEecCHHHHHHHHHHhcCceecCeEEEEEec
Q psy2618 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWG 277 (390)
Q Consensus 245 ~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 277 (390)
++|+|.+.++|..|+.. ++..+..+.|++..-
T Consensus 324 AdveF~t~edav~Amsk-d~anm~hrYVElFln 355 (510)
T KOG4211|consen 324 ADVEFATGEDAVGAMGK-DGANMGHRYVELFLN 355 (510)
T ss_pred ceeecccchhhHhhhcc-CCcccCcceeeeccc
Confidence 99999999999999885 777788888888654
No 32
>KOG0145|consensus
Probab=99.94 E-value=1.3e-26 Score=187.77 Aligned_cols=165 Identities=26% Similarity=0.593 Sum_probs=149.0
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
.+....|.|.-||..+|+++|+.+|...|+|++|++++|+.+|.+.||+||.|.++++|++|+..|+|..+..+.|+|++
T Consensus 38 ~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSy 117 (360)
T KOG0145|consen 38 DESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSY 117 (360)
T ss_pred CcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEEEEe
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeE
Q psy2618 172 STRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYA 245 (390)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~ 245 (390)
+++....-+ ...|||.+||..++..+|..+|++||.|+.-+|+.+ ||.+
T Consensus 118 ARPSs~~Ik-------------------------~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVg 172 (360)
T KOG0145|consen 118 ARPSSDSIK-------------------------DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVG 172 (360)
T ss_pred ccCChhhhc-------------------------ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceeccee
Confidence 986543222 234999999999999999999999999988888866 8999
Q ss_pred EEEecCHHHHHHHHHHhcCceecC--eEEEEEecccCC
Q psy2618 246 FVKFTTKETATHAIESIHNTDING--HTVKCFWGKESE 281 (390)
Q Consensus 246 fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~ 281 (390)
||.|+..++|..|++.|||..-.| ..|.|+|+....
T Consensus 173 FiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 173 FIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred EEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 999999999999999999987655 689999987664
No 33
>KOG0109|consensus
Probab=99.93 E-value=6.5e-26 Score=186.74 Aligned_cols=148 Identities=28% Similarity=0.544 Sum_probs=138.9
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQ 87 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 87 (390)
.+|||+|||.++++.+|+.+|++||+|++|.|+++ |+||..++...|+.||..|++-.|+|..|+|+.++++
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK--- 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK--- 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----cceEEeecccccHHHHhhcccceecceEEEEEecccc---
Confidence 47999999999999999999999999999999976 9999999999999999999999999999999988764
Q ss_pred CCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 88 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
...+.+|+|+||.+.++.++|+..|++||.|.+|.++++ |+||.|...++|..|++.|++.++.|+++
T Consensus 75 ----sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd--------y~fvh~d~~eda~~air~l~~~~~~gk~m 142 (346)
T KOG0109|consen 75 ----SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD--------YAFVHFDRAEDAVEAIRGLDNTEFQGKRM 142 (346)
T ss_pred ----CCCccccccCCCCccccCHHHhhhhcccCCceeeeeecc--------eeEEEEeeccchHHHHhccccccccccee
Confidence 445688999999999999999999999999999999765 89999999999999999999999999999
Q ss_pred EEeecCCC
Q psy2618 168 RTNWSTRK 175 (390)
Q Consensus 168 ~v~~~~~~ 175 (390)
.|..++.+
T Consensus 143 ~vq~stsr 150 (346)
T KOG0109|consen 143 HVQLSTSR 150 (346)
T ss_pred eeeeeccc
Confidence 99988754
No 34
>KOG0131|consensus
Probab=99.93 E-value=3.2e-25 Score=170.49 Aligned_cols=170 Identities=23% Similarity=0.472 Sum_probs=148.9
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
+.....+|||+||+..++++-|.++|-+.|+|.++.+.+|+.+...+||||++|.++++|+.|++-|+...+.|+.|+|.
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~ 84 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVN 84 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEE
Confidence 34556899999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred ecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEE-EEecC------CC
Q psy2618 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KG 243 (390)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~-~~~~~------~g 243 (390)
.+...... ...+..|||+||.+.+++..|.+.|+.||.+... .++++ ++
T Consensus 85 kas~~~~n------------------------l~vganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~ 140 (203)
T KOG0131|consen 85 KASAHQKN------------------------LDVGANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKG 140 (203)
T ss_pred eccccccc------------------------ccccccccccccCcchhHHHHHHHHHhccccccCCcccccccCCCCCC
Confidence 88622111 1122469999999999999999999999988653 44433 78
Q ss_pred eEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCCC
Q psy2618 244 YAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNS 284 (390)
Q Consensus 244 ~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~ 284 (390)
++||.|.+.+.+.+|+..+++..++++.|+|+++..+....
T Consensus 141 ~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 141 FGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred CeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 99999999999999999999999999999999998776554
No 35
>KOG1190|consensus
Probab=99.93 E-value=9.8e-24 Score=181.66 Aligned_cols=273 Identities=16% Similarity=0.293 Sum_probs=199.7
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCe--eeccceeeEeecC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKR--VFLEKEMKVNWAS 82 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v~~~~ 82 (390)
.+++.|++||||++++|+||.+++..||+|..+.+++.+. .||++|.|.++|...+...... .+.+.+|.|+++.
T Consensus 26 ~pSkV~HlRnlp~e~tE~elI~Lg~pFG~vtn~~~lkGkn---QAflem~d~~sAvtmv~~y~~~~p~lr~~~~yiq~sn 102 (492)
T KOG1190|consen 26 EPSKVVHLRNLPWEVTEEELISLGLPFGKVTNLLMLKGKN---QAFLEMADEESAVTMVNYYTSVTPVLRGQPIYIQYSN 102 (492)
T ss_pred CCcceeEeccCCccccHHHHHHhcccccceeeeeeeccch---hhhhhhcchhhhhheeecccccCccccCcceeehhhh
Confidence 4789999999999999999999999999999999887655 8999999999999866543322 2567777777763
Q ss_pred CCC-----C------------------------------CCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEE
Q psy2618 83 SPG-----N------------------------------QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRI 127 (390)
Q Consensus 83 ~~~-----~------------------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 127 (390)
... . ........--.+.|.++-..++-+-|..+|++||.|..|..
T Consensus 103 ~~~lkt~s~p~q~r~~~vy~~~s~~q~~~~~~s~~~~~~G~~~~~n~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiT 182 (492)
T KOG1190|consen 103 HSELKTDSQPNQIRGQAVYQAVSSVQEIVLPLSASAVVVGNEDGPNPVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIIT 182 (492)
T ss_pred HHHHhccCchhhhhhhhHHhhhhcccccccccccccccccccCCCceeEEEEeccceeeeEHHHHHHHHhhcceeEEEEE
Confidence 110 0 00011112345678999999999999999999999998866
Q ss_pred eeCCCCCCCCcE-EEEEecCHHHHHHHHHHhcCceeCC--eeEEEeecCCCCC----------CCcccccccCCC-----
Q psy2618 128 VRDPQTLKSKGY-AFVSFVKKAEAENAITAMNGQWLGS--RSIRTNWSTRKPP----------AMTNERKRQNSH----- 189 (390)
Q Consensus 128 ~~~~~~g~~~g~-afv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~~----------~~~~~~~~~~~~----- 189 (390)
.. +..+| |.|+|.+.+.|..|...|+|..|.. +.|++.++....- ...+........
T Consensus 183 F~-----Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Sklt~LnvKynndkSRDyTnp~LP~gd~~p~l~ 257 (492)
T KOG1190|consen 183 FT-----KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKLTDLNVKYNNDKSRDYTNPDLPVGDGQPSLD 257 (492)
T ss_pred Ee-----cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhcccceeeccccccccccCCCCCCCccccccc
Confidence 54 24556 9999999999999999999987744 5566666543211 111100000000
Q ss_pred --------------Cccccccc-------cccCCC-C-CcceeEEcCCCCC-CcHHHHHhhhcCCCceeEEEEecC-CCe
Q psy2618 190 --------------TKTITFDE-------VYNQSS-P-TNCTVYCGGFGKD-LNEELVSKVFSPFGTIVDIRVFKE-KGY 244 (390)
Q Consensus 190 --------------~~~~~~~~-------~~~~~~-~-~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~-~g~ 244 (390)
........ ...... + .++.|.|.||... +|.+.|..+|.-||+|.+|+|+.+ +..
T Consensus 258 ~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ 337 (492)
T KOG1190|consen 258 QLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDN 337 (492)
T ss_pred hhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcc
Confidence 00000000 000111 1 2678999999875 899999999999999999999977 568
Q ss_pred EEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCCCC
Q psy2618 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285 (390)
Q Consensus 245 ~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~ 285 (390)
|.|.+.+...|.-|++.|+|..+.|+.|+|.+++......+
T Consensus 338 ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp 378 (492)
T KOG1190|consen 338 ALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLP 378 (492)
T ss_pred eeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCC
Confidence 99999999999999999999999999999999988765443
No 36
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.92 E-value=5.2e-24 Score=205.61 Aligned_cols=170 Identities=22% Similarity=0.356 Sum_probs=142.6
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
...++|||+|||..+++++|+++|+.||.|..+.++++. .++|||||+|.+.++|..|++.|++..+.|+.|.|.++
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a 372 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRA 372 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEC
Confidence 346899999999999999999999999999999998874 36899999999999999999999999999999999998
Q ss_pred CCCCCCCC-----------------------CCCCCceEEEEcCCCccc----------CHHHHHHHhCCCCCeeEEEEe
Q psy2618 82 SSPGNQPK-----------------------QDTSNHYHIFVGDLSPEI----------ETQTLKEAFAPFGEISNCRIV 128 (390)
Q Consensus 82 ~~~~~~~~-----------------------~~~~~~~~l~v~nl~~~~----------~~~~l~~~f~~~G~i~~~~~~ 128 (390)
........ ....+..+|+|.|+.... ..++|+++|++||.|..|.|.
T Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~ 452 (509)
T TIGR01642 373 CVGANQATIDTSNGMAPVTLLAKALSQSILQIGGKPTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIP 452 (509)
T ss_pred ccCCCCCCccccccccccccccccchhhhccccCCCceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEee
Confidence 64321110 011245788999996321 236799999999999999998
Q ss_pred eCC---CCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 129 RDP---QTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 129 ~~~---~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
++. .++...|++||+|.+.++|.+|+..|+|..+.|+.|.+.|...
T Consensus 453 ~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~gr~v~~~~~~~ 501 (509)
T TIGR01642 453 RPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFNDRVVVAAFYGE 501 (509)
T ss_pred ccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEeCH
Confidence 753 3455689999999999999999999999999999999998753
No 37
>KOG4212|consensus
Probab=99.92 E-value=4.9e-23 Score=178.73 Aligned_cols=160 Identities=21% Similarity=0.309 Sum_probs=133.5
Q ss_pred CCeEEEeCCChhccHHHHHHHhc-ccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFS-QIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~-~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.|.+||+|||+++...+|+++|+ +.|+|.-|.++.|.. .+|+|.|||+++|.+++|++.||...+.|++|.|.-...
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~d 123 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDHD 123 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccCc
Confidence 45699999999999999999996 568999999988764 679999999999999999999999999999999987754
Q ss_pred CCC------------------------------------------CCC--------------------------------
Q psy2618 84 PGN------------------------------------------QPK-------------------------------- 89 (390)
Q Consensus 84 ~~~------------------------------------------~~~-------------------------------- 89 (390)
... ...
T Consensus 124 ~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfgl~~~F 203 (608)
T KOG4212|consen 124 EQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFGLSASF 203 (608)
T ss_pred hhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhcccchhhh
Confidence 110 000
Q ss_pred ------CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 90 ------QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 90 ------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
-....+.++||.||...+....|++.|.--|.|..+.+-.|+.. .++|+|.++|.++-+|..|+..+++.-+.
T Consensus 204 lr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG-~s~G~~vi~y~hpveavqaIsml~~~g~~ 282 (608)
T KOG4212|consen 204 LRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEG-NSRGFAVIEYDHPVEAVQAISMLDRQGLF 282 (608)
T ss_pred hhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeecccc-ccCCeeEEEecchHHHHHHHHhhccCCCc
Confidence 01122568999999999999999999999999999999888665 88999999999999999999988865544
Q ss_pred CeeE
Q psy2618 164 SRSI 167 (390)
Q Consensus 164 g~~i 167 (390)
.++.
T Consensus 283 ~~~~ 286 (608)
T KOG4212|consen 283 DRRM 286 (608)
T ss_pred cccc
Confidence 4433
No 38
>KOG4205|consensus
Probab=99.91 E-value=1.6e-23 Score=181.62 Aligned_cols=172 Identities=26% Similarity=0.502 Sum_probs=150.2
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
+.++|||++|+|+++++.|++.|..||+|.+|.+++|+.+++++||+||+|.+++.+..++.. ..+.|+|+.|.+..+.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av 83 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAV 83 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccceecc
Confidence 678999999999999999999999999999999999999999999999999999999999854 6789999999999887
Q ss_pred CCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEE
Q psy2618 174 RKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFV 247 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv 247 (390)
+.......... ....+|||++|+.++++++++++|++||.|.++.++.+ ++|+||
T Consensus 84 ~r~~~~~~~~~-------------------~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv 144 (311)
T KOG4205|consen 84 SREDQTKVGRH-------------------LRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFV 144 (311)
T ss_pred Ccccccccccc-------------------cceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceee
Confidence 66543332221 13457999999999999999999999999999988855 799999
Q ss_pred EecCHHHHHHHHHHhcCceecCeEEEEEecccCCCCCCC
Q psy2618 248 KFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTL 286 (390)
Q Consensus 248 ~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~ 286 (390)
.|.+++.+.+++. .....|+|+.+.|..|.++......
T Consensus 145 ~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 145 TFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred Eeccccccceecc-cceeeecCceeeEeeccchhhcccc
Confidence 9999999998877 5777899999999999888755443
No 39
>KOG0109|consensus
Probab=99.91 E-value=3.8e-24 Score=176.35 Aligned_cols=149 Identities=28% Similarity=0.516 Sum_probs=137.0
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
.+|||+|||.++++.+|+.+|++||+|.+|.|+++ |+||..++...++.|+..|++..|+|..|.|+-+..+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN--------YgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN--------YGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc--------cceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 46999999999999999999999999999999865 8999999999999999999999999999999987654
Q ss_pred CCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHH
Q psy2618 176 PPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETA 255 (390)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a 255 (390)
+..+++|+|+||...++..+|+..|++||.|+++.|++ +++||.|+-.++|
T Consensus 75 ---------------------------sk~stkl~vgNis~tctn~ElRa~fe~ygpviecdivk--dy~fvh~d~~eda 125 (346)
T KOG0109|consen 75 ---------------------------SKASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVK--DYAFVHFDRAEDA 125 (346)
T ss_pred ---------------------------CCCccccccCCCCccccCHHHhhhhcccCCceeeeeec--ceeEEEEeeccch
Confidence 12335699999999999999999999999999999975 5999999999999
Q ss_pred HHHHHHhcCceecCeEEEEEecccCC
Q psy2618 256 THAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 256 ~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
..|++.|++.+++|++++|..+.+.-
T Consensus 126 ~~air~l~~~~~~gk~m~vq~stsrl 151 (346)
T KOG0109|consen 126 VEAIRGLDNTEFQGKRMHVQLSTSRL 151 (346)
T ss_pred HHHHhcccccccccceeeeeeecccc
Confidence 99999999999999999999987664
No 40
>KOG1190|consensus
Probab=99.91 E-value=4.1e-22 Score=171.70 Aligned_cols=269 Identities=18% Similarity=0.300 Sum_probs=206.7
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc--ceeeEeecCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLE--KEMKVNWASS 83 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~ 83 (390)
+-.+++|.|+-..++-+-|..+|++||.|+.|.... +.+.-.|.|+|.+.+.|..|...|+|.-+.+ +.|+|++++-
T Consensus 149 ~vLr~iie~m~ypVslDVLHqvFS~fG~VlKIiTF~-Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~Skl 227 (492)
T KOG1190|consen 149 PVLRTIIENMFYPVSLDVLHQVFSKFGFVLKIITFT-KNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFSKL 227 (492)
T ss_pred eeEEEEeccceeeeEHHHHHHHHhhcceeEEEEEEe-cccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehhhc
Confidence 445788999999999999999999999998664332 3344589999999999999999999987664 7777777732
Q ss_pred ----------CCC---------C--------------------------------------CCC-CCCCceEEEEcCCC-
Q psy2618 84 ----------PGN---------Q--------------------------------------PKQ-DTSNHYHIFVGDLS- 104 (390)
Q Consensus 84 ----------~~~---------~--------------------------------------~~~-~~~~~~~l~v~nl~- 104 (390)
+++ . .+. ....+..|.|.||.
T Consensus 228 t~LnvKynndkSRDyTnp~LP~gd~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~~n~vllvsnln~ 307 (492)
T KOG1190|consen 228 TDLNVKYNNDKSRDYTNPDLPVGDGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPSANVVLLVSNLNE 307 (492)
T ss_pred ccceeeccccccccccCCCCCCCccccccchhhhccccccccccCCcccCCccchhhcccccccccCCCceEEEEecCch
Confidence 000 0 000 00014778899997
Q ss_pred cccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCCCCccccc
Q psy2618 105 PEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184 (390)
Q Consensus 105 ~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~ 184 (390)
..+|.+.|..+|.-||.|..|+++.++. .-|.|++.|...|..|++.|+|+.+.|+.|+|.++....-.......
T Consensus 308 ~~VT~d~LftlFgvYGdVqRVkil~nkk-----d~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH~~vqlp~egq 382 (492)
T KOG1190|consen 308 EAVTPDVLFTLFGVYGDVQRVKILYNKK-----DNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKHTNVQLPREGQ 382 (492)
T ss_pred hccchhHHHHHHhhhcceEEEEeeecCC-----cceeeeecchhHHHHHHHHhhcceecCceEEEeeccCccccCCCCCC
Confidence 5689999999999999999999998743 46999999999999999999999999999999999876554444333
Q ss_pred ccCCCCccc------cc----cccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEe--cCCCeEEEEecCH
Q psy2618 185 RQNSHTKTI------TF----DEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF--KEKGYAFVKFTTK 252 (390)
Q Consensus 185 ~~~~~~~~~------~~----~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~--~~~g~~fv~f~~~ 252 (390)
+........ .+ ...+....+++.+|++.|+|.+++||+|+..|..-|-..+.... +++.++.+.+.+.
T Consensus 383 ~d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sv 462 (492)
T KOG1190|consen 383 EDQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESV 462 (492)
T ss_pred ccccccccCCCCchhhccCcccccccccCCchhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCCh
Confidence 321111111 11 11122344678899999999999999999999998866554333 5688999999999
Q ss_pred HHHHHHHHHhcCceecC-eEEEEEecccC
Q psy2618 253 ETATHAIESIHNTDING-HTVKCFWGKES 280 (390)
Q Consensus 253 ~~a~~a~~~l~~~~~~g-~~i~v~~~~~~ 280 (390)
|+|..|+..+|...+++ ..|+|+|++..
T Consensus 463 eeA~~ali~~hnh~lgen~hlRvSFSks~ 491 (492)
T KOG1190|consen 463 EEAIQALIDLHNHYLGENHHLRVSFSKST 491 (492)
T ss_pred hHhhhhccccccccCCCCceEEEEeeccc
Confidence 99999999999988865 59999998753
No 41
>KOG0110|consensus
Probab=99.90 E-value=1.3e-23 Score=193.25 Aligned_cols=171 Identities=24% Similarity=0.413 Sum_probs=147.8
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC------CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG------NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~------~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
.++|||+||+++++.++|..+|+..|.|+++.|.+-++ +.|||||+|.+.++|.+|++.|+|+.+.|+.|.|.+
T Consensus 515 ~t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~ 594 (725)
T KOG0110|consen 515 ETKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKI 594 (725)
T ss_pred chhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEEEe
Confidence 34499999999999999999999999999998876554 349999999999999999999999999999999999
Q ss_pred cCCCCC---CCCC-CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHH
Q psy2618 81 ASSPGN---QPKQ-DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156 (390)
Q Consensus 81 ~~~~~~---~~~~-~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 156 (390)
+..... .... .....+.|+|+|||+..+..+++.+|..||.|.++++......+.++|||||+|.++.+|.+|++.
T Consensus 595 S~~k~~~~~gK~~~~kk~~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~a 674 (725)
T KOG0110|consen 595 SENKPASTVGKKKSKKKKGTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDA 674 (725)
T ss_pred ccCccccccccccccccccceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHh
Confidence 982211 1111 112246899999999999999999999999999999987755556899999999999999999999
Q ss_pred hcCceeCCeeEEEeecCCCCC
Q psy2618 157 MNGQWLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 157 l~~~~~~g~~i~v~~~~~~~~ 177 (390)
|....+.||+|.++|+.....
T Consensus 675 l~STHlyGRrLVLEwA~~d~~ 695 (725)
T KOG0110|consen 675 LGSTHLYGRRLVLEWAKSDNT 695 (725)
T ss_pred hcccceechhhheehhccchH
Confidence 999999999999999976543
No 42
>KOG0124|consensus
Probab=99.89 E-value=5.7e-23 Score=174.47 Aligned_cols=170 Identities=30% Similarity=0.528 Sum_probs=146.0
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
-++|||+.|.++..|+.|+..|..||+|++|.+--|+.|++++|||||+|+-+|.|..|++.+|+..++||.|+|.....
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999999999985543
Q ss_pred CCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEE
Q psy2618 175 KPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248 (390)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~ 248 (390)
-+...... +...+....-.+|||..+..+++++||+..|+.||+|++|.+-+. |||+||+
T Consensus 193 mpQAQpiI--------------D~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiE 258 (544)
T KOG0124|consen 193 MPQAQPII--------------DMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIE 258 (544)
T ss_pred CcccchHH--------------HHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEE
Confidence 32211111 111111112246999999999999999999999999999999876 8999999
Q ss_pred ecCHHHHHHHHHHhcCceecCeEEEEEecc
Q psy2618 249 FTTKETATHAIESIHNTDINGHTVKCFWGK 278 (390)
Q Consensus 249 f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 278 (390)
|.+..+...|+..||-..++|..|+|-.+-
T Consensus 259 y~n~qs~~eAiasMNlFDLGGQyLRVGk~v 288 (544)
T KOG0124|consen 259 YNNLQSQSEAIASMNLFDLGGQYLRVGKCV 288 (544)
T ss_pred eccccchHHHhhhcchhhcccceEeccccc
Confidence 999999999999999999999999996553
No 43
>KOG4205|consensus
Probab=99.88 E-value=1.3e-22 Score=176.08 Aligned_cols=177 Identities=24% Similarity=0.434 Sum_probs=156.2
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||++|+|+++++.|++.|+.||+|.++.+.++.. +++|+||+|++.+...++|.. ..+.+.|+.|...
T Consensus 2 ~~~~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k 80 (311)
T KOG4205|consen 2 ESGESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPK 80 (311)
T ss_pred CccCCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeecc-cccccCCccccce
Confidence 445899999999999999999999999999999999998764 779999999999999999974 5667899999999
Q ss_pred ecCCCCCCCCCC-CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc
Q psy2618 80 WASSPGNQPKQD-TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158 (390)
Q Consensus 80 ~~~~~~~~~~~~-~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 158 (390)
.+.++....... .....+|||++||.+++++++++.|++||.|..+.++.|..+.+++||+||+|.+.+++++++.. .
T Consensus 81 ~av~r~~~~~~~~~~~tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~~-~ 159 (311)
T KOG4205|consen 81 RAVSREDQTKVGRHLRTKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTLQ-K 159 (311)
T ss_pred eccCcccccccccccceeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceeccc-c
Confidence 998876544333 22567899999999999999999999999999999999999999999999999999999999854 7
Q ss_pred CceeCCeeEEEeecCCCCCCCcc
Q psy2618 159 GQWLGSRSIRTNWSTRKPPAMTN 181 (390)
Q Consensus 159 ~~~~~g~~i~v~~~~~~~~~~~~ 181 (390)
-+.+.++.+.|..+.++......
T Consensus 160 f~~~~gk~vevkrA~pk~~~~~~ 182 (311)
T KOG4205|consen 160 FHDFNGKKVEVKRAIPKEVMQST 182 (311)
T ss_pred eeeecCceeeEeeccchhhcccc
Confidence 78999999999999887654443
No 44
>KOG0146|consensus
Probab=99.87 E-value=2.8e-22 Score=163.39 Aligned_cols=172 Identities=28% Similarity=0.492 Sum_probs=150.2
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCee-ecc--ceeeEee
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRV-FLE--KEMKVNW 80 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~-~~g--~~l~v~~ 80 (390)
+.++|||+-|...-+|+|++.+|..||.|.+|.+.+... +||+|||+|.+..+|..||..|+|.. +.| ..|.|++
T Consensus 18 ~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ 97 (371)
T KOG0146|consen 18 DDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKF 97 (371)
T ss_pred cchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEe
Confidence 678999999999999999999999999999999987654 89999999999999999999999876 444 6788888
Q ss_pred cCCCCCCC------------------------------------------------------------------------
Q psy2618 81 ASSPGNQP------------------------------------------------------------------------ 88 (390)
Q Consensus 81 ~~~~~~~~------------------------------------------------------------------------ 88 (390)
+....++.
T Consensus 98 ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~angl~A~ 177 (371)
T KOG0146|consen 98 ADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNANGLAAA 177 (371)
T ss_pred ccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhcccccC
Confidence 85433200
Q ss_pred --------------------------------------------------------------------------------
Q psy2618 89 -------------------------------------------------------------------------------- 88 (390)
Q Consensus 89 -------------------------------------------------------------------------------- 88 (390)
T Consensus 178 Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~Y~Aay 257 (371)
T KOG0146|consen 178 PVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQYAAAY 257 (371)
T ss_pred CcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHHHhhhc
Confidence
Q ss_pred ---------------------CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCH
Q psy2618 89 ---------------------KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147 (390)
Q Consensus 89 ---------------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~ 147 (390)
..+..+.|.|||-.||.+..+.+|...|-.||.|.+.++..|+.|..++.|+||.|+++
T Consensus 258 paays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp 337 (371)
T KOG0146|consen 258 PAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNP 337 (371)
T ss_pred chhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeEecCCc
Confidence 00001168999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCceeCCeeEEEeecCCCCC
Q psy2618 148 AEAENAITAMNGQWLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 148 ~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 177 (390)
.++..||..+||..|+=++|+|.+.+++..
T Consensus 338 ~SaQaAIqAMNGFQIGMKRLKVQLKRPkda 367 (371)
T KOG0146|consen 338 ASAQAAIQAMNGFQIGMKRLKVQLKRPKDA 367 (371)
T ss_pred hhHHHHHHHhcchhhhhhhhhhhhcCcccc
Confidence 999999999999999999999998877653
No 45
>KOG1365|consensus
Probab=99.87 E-value=4.1e-21 Score=164.21 Aligned_cols=275 Identities=17% Similarity=0.166 Sum_probs=195.2
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccC----CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIG----PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G----~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
..++..|+.|+|||..++.+|..||.... .+.-+... ..+-.|.|.|.|.+.|.-+.|+++ +..++.++.|.|.
T Consensus 57 ~~~~vvvRaRglpwq~Sd~~ia~ff~gl~ia~gg~aKOG~~-qgrRnge~lvrf~d~e~RdlalkR-hkhh~g~ryievY 134 (508)
T KOG1365|consen 57 ADDNVVVRARGLPWQSSDQDIARFFKGLNIANGGRALCLNA-QGRRNGEALVRFVDPEGRDLALKR-HKHHMGTRYIEVY 134 (508)
T ss_pred cCcceEEEecCCCCCcccCCHHHHHhhhhccccceeeeehh-hhccccceEEEecCchhhhhhhHh-hhhhccCCceeee
Confidence 45678899999999999999999998652 22222222 223457999999999999999997 7777888999888
Q ss_pred ecCCCCC-----------CCCCCCCCceEEEEcCCCcccCHHHHHHHhCCC----CCeeEEEEeeCCCCCCCCcEEEEEe
Q psy2618 80 WASSPGN-----------QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF----GEISNCRIVRDPQTLKSKGYAFVSF 144 (390)
Q Consensus 80 ~~~~~~~-----------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~----G~i~~~~~~~~~~~g~~~g~afv~f 144 (390)
.+...+- ..-.+..+.-.|.+++||+++++.++.++|..- |..+.+.++.. .+|+..|-|||.|
T Consensus 135 ka~ge~f~~iagg~s~e~~~flsk~~qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~r-pdgrpTGdAFvlf 213 (508)
T KOG1365|consen 135 KATGEEFLKIAGGTSNEAAPFLSKENQVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTR-PDGRPTGDAFVLF 213 (508)
T ss_pred ccCchhheEecCCccccCCCCCCcccceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEEC-CCCCcccceEEEe
Confidence 7754321 111222345678899999999999999999742 34556666665 3568999999999
Q ss_pred cCHHHHHHHHHHhcCceeCCeeEEEeecCCCCCCCccccccc---CCC-Ccccc--ccccccCCCCCcceeEEcCCCCCC
Q psy2618 145 VKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ---NSH-TKTIT--FDEVYNQSSPTNCTVYCGGFGKDL 218 (390)
Q Consensus 145 ~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~---~~~-~~~~~--~~~~~~~~~~~~~~l~v~~l~~~~ 218 (390)
..+++|+.|+.+ +...++.|.|.+..++...-.....+... ... ..... .............+|.+++||+..
T Consensus 214 a~ee~aq~aL~k-hrq~iGqRYIElFRSTaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~A 292 (508)
T KOG1365|consen 214 ACEEDAQFALRK-HRQNIGQRYIELFRSTAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEA 292 (508)
T ss_pred cCHHHHHHHHHH-HHHHHhHHHHHHHHHhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhh
Confidence 999999999976 66778888887776653321111111100 000 00000 011112223335679999999999
Q ss_pred cHHHHHhhhcCCCce-eE--EEEe-----cCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 219 NEELVSKVFSPFGTI-VD--IRVF-----KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 219 ~~~~l~~~f~~~g~v-~~--~~~~-----~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
+.|||.+||..|..- .. |.+. +..|.|||+|.+.++|..|....+++.+..|.|+|.-+...+-
T Consensus 293 tvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S~eel 364 (508)
T KOG1365|consen 293 TVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCSVEEL 364 (508)
T ss_pred hHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeeccHHHH
Confidence 999999999988743 22 4444 3378999999999999999999999888899999987766543
No 46
>KOG0120|consensus
Probab=99.86 E-value=3.1e-21 Score=175.48 Aligned_cols=271 Identities=22% Similarity=0.354 Sum_probs=206.6
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhccc-----------C-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQI-----------G-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFL 72 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~-----------G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~ 72 (390)
...++++|+++|..++++.+..+|..- | .|+.+.+... +++||++|.+.++|..|+. +++..+.
T Consensus 173 ~q~~r~~v~~~~~~~~e~~~~~f~~~~~~~~gl~~~~~g~~~~s~~~n~~---~nfa~ie~~s~~~at~~~~-~~~~~f~ 248 (500)
T KOG0120|consen 173 RQARRLYVGNIPFTSNEESMMSFFNSRMHASGLNQAPDGPSFVSVQLNLE---KNFAFIEFRSISEATEAMA-LDGIIFE 248 (500)
T ss_pred hhhhhhcccccCCccCcHhhhhhhhhhhhhcccccCCCCCceeeeeeccc---ccceeEEecCCCchhhhhc-ccchhhC
Confidence 345789999999999999999999753 2 3677776554 4499999999999999995 7888888
Q ss_pred cceeeEeecCCCCC------------------CCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCC
Q psy2618 73 EKEMKVNWASSPGN------------------QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL 134 (390)
Q Consensus 73 g~~l~v~~~~~~~~------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g 134 (390)
|..+++..-..... .........++++|++||...++..++++...||.+....++.+..+|
T Consensus 249 g~~~~~~r~~d~~~~p~~~~~~~~~~~~~~~~~~t~~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g 328 (500)
T KOG0120|consen 249 GRPLKIRRPHDYQPVPGITLSPSQLGKVGLLPASTDVPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATG 328 (500)
T ss_pred CCCceecccccccCCccchhhhccccccCCcccccCcccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccc
Confidence 88887776544221 223344557899999999999999999999999999999999999999
Q ss_pred CCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCCCCcccccccCCCCcccccccc-ccCCCCCcceeEEcC
Q psy2618 135 KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV-YNQSSPTNCTVYCGG 213 (390)
Q Consensus 135 ~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~v~~ 213 (390)
.++||||.+|.++.....|+..|+|..++++.|.|..+............ ........+... ......++..|.+.|
T Consensus 329 ~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g~~~~~~~~~--~~~~~~~~i~~~~~q~~g~~t~Vl~L~n 406 (500)
T KOG0120|consen 329 NSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVGASNANVNFN--ISQSQVPGIPLLMTQMAGIPTEVLCLTN 406 (500)
T ss_pred cccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhccchhccccCC--ccccccccchhhhcccCCCcchhhhhhh
Confidence 99999999999999999999999999999999999988655432222221 000011111111 122233344444444
Q ss_pred CCC--C-Cc-------HHHHHhhhcCCCceeEEEEecC---------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEE
Q psy2618 214 FGK--D-LN-------EELVSKVFSPFGTIVDIRVFKE---------KGYAFVKFTTKETATHAIESIHNTDINGHTVKC 274 (390)
Q Consensus 214 l~~--~-~~-------~~~l~~~f~~~g~v~~~~~~~~---------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 274 (390)
+=. + .+ .|+++.-+..||.|..|.+.++ -|..||+|.+.+++++|+..|+|..+.|+.|..
T Consensus 407 ~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvt 486 (500)
T KOG0120|consen 407 VVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVA 486 (500)
T ss_pred cCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEE
Confidence 321 1 12 2466777889999999999977 478999999999999999999999999999999
Q ss_pred EecccCC
Q psy2618 275 FWGKESE 281 (390)
Q Consensus 275 ~~~~~~~ 281 (390)
+|-....
T Consensus 487 sYydeDk 493 (500)
T KOG0120|consen 487 SYYDEDK 493 (500)
T ss_pred EecCHHH
Confidence 8876543
No 47
>KOG0146|consensus
Probab=99.86 E-value=2.7e-21 Score=157.66 Aligned_cols=206 Identities=25% Similarity=0.468 Sum_probs=156.4
Q ss_pred cceeeEeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHH
Q psy2618 73 EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152 (390)
Q Consensus 73 g~~l~v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ 152 (390)
++.|.|+.+.+.++ ..++++|||+-|.....|+|++.+|..||+|++|.+.+.. .|.++|++||.|.+..+|..
T Consensus 2 nrpiqvkpadsesr-----g~~drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~-dg~sKGCAFVKf~s~~eAqa 75 (371)
T KOG0146|consen 2 NRPIQVKPADSESR-----GGDDRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGP-DGNSKGCAFVKFSSHAEAQA 75 (371)
T ss_pred CCCccccccccccC-----CccchhhhhhhhcccccHHHHHHHhcccCCcceeEEecCC-CCCCCCceEEEeccchHHHH
Confidence 34566665554222 2367899999999999999999999999999999999885 45899999999999999999
Q ss_pred HHHHhcCce-eC--CeeEEEeecCCCCCCCcccccc--------------------------------------------
Q psy2618 153 AITAMNGQW-LG--SRSIRTNWSTRKPPAMTNERKR-------------------------------------------- 185 (390)
Q Consensus 153 a~~~l~~~~-~~--g~~i~v~~~~~~~~~~~~~~~~-------------------------------------------- 185 (390)
||+.|++.. +- ...|.|++++...++.-+.-..
T Consensus 76 AI~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~ 155 (371)
T KOG0146|consen 76 AINALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPM 155 (371)
T ss_pred HHHHhcccccCCCCccceEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChh
Confidence 999999864 33 4667788776542210000000
Q ss_pred -------------------------cCCC-Cc-----------------c------------------------------
Q psy2618 186 -------------------------QNSH-TK-----------------T------------------------------ 192 (390)
Q Consensus 186 -------------------------~~~~-~~-----------------~------------------------------ 192 (390)
.... .. .
T Consensus 156 ~~~~~~~mQ~~aA~~angl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQ 235 (371)
T KOG0146|consen 156 AAFAAAQMQQMAALNANGLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQ 235 (371)
T ss_pred hhhHHHHHHHHHHHhhcccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCC
Confidence 0000 00 0
Q ss_pred ------------------------------------ccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEE
Q psy2618 193 ------------------------------------ITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI 236 (390)
Q Consensus 193 ------------------------------------~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~ 236 (390)
...-.......+..|.|||-.||.+..+.+|...|-+||.|++.
T Consensus 236 sp~va~~lq~a~~g~~~Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSa 315 (371)
T KOG0146|consen 236 SPTVADPLQQAYAGVQQYAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSA 315 (371)
T ss_pred CccccchhhhhhhhHHHHhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeee
Confidence 00000112334568999999999999999999999999999999
Q ss_pred EEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCCC
Q psy2618 237 RVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNS 284 (390)
Q Consensus 237 ~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~ 284 (390)
++..| |.|+||.|+++.+|+.||..|||..|+-|+|+|.+.++++.+.
T Consensus 316 KVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKRLKVQLKRPkdanR 369 (371)
T KOG0146|consen 316 KVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKRLKVQLKRPKDANR 369 (371)
T ss_pred eeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhhhhhhhcCccccCC
Confidence 88866 6899999999999999999999999999999999988887543
No 48
>KOG4206|consensus
Probab=99.85 E-value=3e-20 Score=149.30 Aligned_cols=166 Identities=25% Similarity=0.413 Sum_probs=143.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHH----HhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCA----LFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~----~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
+..+..||||+||+..+..++|++ +|++||.|++|...+....+|.|||.|++.+.|..|++.|+|..+.|++++|
T Consensus 5 ~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mri 84 (221)
T KOG4206|consen 5 SVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRI 84 (221)
T ss_pred ccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCchhhe
Confidence 445666999999999999999998 9999999999999888889999999999999999999999999999999999
Q ss_pred eecCCCCCCCC---------------------------------------------CCCCCceEEEEcCCCcccCHHHHH
Q psy2618 79 NWASSPGNQPK---------------------------------------------QDTSNHYHIFVGDLSPEIETQTLK 113 (390)
Q Consensus 79 ~~~~~~~~~~~---------------------------------------------~~~~~~~~l~v~nl~~~~~~~~l~ 113 (390)
.++++.++... ....++..||+.|||.+++.+.+.
T Consensus 85 qyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l~ 164 (221)
T KOG4206|consen 85 QYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEMLS 164 (221)
T ss_pred ecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHHH
Confidence 99986543111 113456789999999999999999
Q ss_pred HHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEeecC
Q psy2618 114 EAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG-SRSIRTNWST 173 (390)
Q Consensus 114 ~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 173 (390)
.+|..|.-...++++.. .++.|||+|.+...+..|...+.+..+- ...+.|.++.
T Consensus 165 ~lf~qf~g~keir~i~~-----~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 165 DLFEQFPGFKEIRLIPP-----RSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHhhCcccceeEeccC-----CCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 99999999999988875 4678999999999999999999988775 6677776653
No 49
>KOG0105|consensus
Probab=99.85 E-value=2.7e-20 Score=143.59 Aligned_cols=152 Identities=22% Similarity=0.415 Sum_probs=131.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.+.+++|+|+|||.++.+.||+++|.+||.|..|.++.-...-.||||+|++..+|+.||.--++.-+.|..|+|+++..
T Consensus 3 gr~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprg 82 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRG 82 (241)
T ss_pred CcccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEEeccC
Confidence 35789999999999999999999999999999998876555567999999999999999999899999999999999965
Q ss_pred CCC---------------------CCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEE
Q psy2618 84 PGN---------------------QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFV 142 (390)
Q Consensus 84 ~~~---------------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv 142 (390)
-.. +-.....+...|.|++||.+.++++|++...+-|.|.-..+.+| |.+.|
T Consensus 83 gr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-------g~GvV 155 (241)
T KOG0105|consen 83 GRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-------GVGVV 155 (241)
T ss_pred CCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-------cceee
Confidence 321 11223445788999999999999999999999999988777665 47899
Q ss_pred EecCHHHHHHHHHHhcCcee
Q psy2618 143 SFVKKAEAENAITAMNGQWL 162 (390)
Q Consensus 143 ~f~~~~~a~~a~~~l~~~~~ 162 (390)
+|...|+.+.|+..|+...+
T Consensus 156 ~~~r~eDMkYAvr~ld~~~~ 175 (241)
T KOG0105|consen 156 EYLRKEDMKYAVRKLDDQKF 175 (241)
T ss_pred eeeehhhHHHHHHhhccccc
Confidence 99999999999999987655
No 50
>KOG1456|consensus
Probab=99.83 E-value=2.5e-18 Score=146.80 Aligned_cols=270 Identities=16% Similarity=0.232 Sum_probs=200.9
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHH--hcCeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAA--MNKRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~--l~~~~~~g~~l~v~~~ 81 (390)
-.++-.|+||+|-..++|.||.+.++.||+|.-|.....++ .|.|+|+|.+.|++|+.- -+...+.|....+.++
T Consensus 28 ~~~spvvhvr~l~~~v~eadl~eal~~fG~i~yvt~~P~~r---~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~NyS 104 (494)
T KOG1456|consen 28 PNPSPVVHVRGLHQGVVEADLVEALSNFGPIAYVTCMPHKR---QALVEFEDIEGAKNCVNFAADNQIYIAGQQALFNYS 104 (494)
T ss_pred CCCCceEEEeccccccchhHHHHHHhcCCceEEEEeccccc---eeeeeeccccchhhheehhccCcccccCchhhcccc
Confidence 45677899999999999999999999999998777665444 899999999999999863 2344567777777777
Q ss_pred CCCC-CCCC-CCCCCceEEEEcCCC--cccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHh
Q psy2618 82 SSPG-NQPK-QDTSNHYHIFVGDLS--PEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 82 ~~~~-~~~~-~~~~~~~~l~v~nl~--~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 157 (390)
.+.. ++.. +....+..|.+.-|. ..+|-+-|..+....|+|..|.|++. .---|.|+|++.+.|++|.+.|
T Consensus 105 tsq~i~R~g~es~~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk-----ngVQAmVEFdsv~~AqrAk~al 179 (494)
T KOG1456|consen 105 TSQCIERPGDESATPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK-----NGVQAMVEFDSVEVAQRAKAAL 179 (494)
T ss_pred hhhhhccCCCCCCCCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec-----cceeeEEeechhHHHHHHHhhc
Confidence 5432 2222 233344445544444 67899999999999999999988874 2345999999999999999999
Q ss_pred cCceeC--CeeEEEeecCCCCCCCcccccc---------------cCC-----------CCccccc--------------
Q psy2618 158 NGQWLG--SRSIRTNWSTRKPPAMTNERKR---------------QNS-----------HTKTITF-------------- 195 (390)
Q Consensus 158 ~~~~~~--g~~i~v~~~~~~~~~~~~~~~~---------------~~~-----------~~~~~~~-------------- 195 (390)
+|..|. -.+|+|+++.+..-........ ... ......+
T Consensus 180 NGADIYsGCCTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~ 259 (494)
T KOG1456|consen 180 NGADIYSGCCTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHG 259 (494)
T ss_pred ccccccccceeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCC
Confidence 998874 4678888886642110000000 000 0000000
Q ss_pred ---------c-c-------cccCCCCCcceeEEcCCCCC-CcHHHHHhhhcCCCceeEEEEecC-CCeEEEEecCHHHHH
Q psy2618 196 ---------D-E-------VYNQSSPTNCTVYCGGFGKD-LNEELVSKVFSPFGTIVDIRVFKE-KGYAFVKFTTKETAT 256 (390)
Q Consensus 196 ---------~-~-------~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~-~g~~fv~f~~~~~a~ 256 (390)
. . .......+.+.+.|-+|.-. ++-+.|..+|..||.|++|++++. .|.|.|++.|..+.+
T Consensus 260 p~~~~P~r~~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~ave 339 (494)
T KOG1456|consen 260 PPHPPPSRYRDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVE 339 (494)
T ss_pred CCCCCCCCCccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHH
Confidence 0 0 00123345789999999875 678899999999999999999987 689999999999999
Q ss_pred HHHHHhcCceecCeEEEEEecccCC
Q psy2618 257 HAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 257 ~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
+|+..||+..+.|.+|.|.+++...
T Consensus 340 r~v~hLnn~~lfG~kl~v~~SkQ~~ 364 (494)
T KOG1456|consen 340 RAVTHLNNIPLFGGKLNVCVSKQNF 364 (494)
T ss_pred HHHHHhccCccccceEEEeeccccc
Confidence 9999999999999999998887654
No 51
>KOG1456|consensus
Probab=99.81 E-value=4.3e-17 Score=139.38 Aligned_cols=269 Identities=17% Similarity=0.219 Sum_probs=198.1
Q ss_pred CCCCeEEEeCCC--hhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc--ceeeEee
Q psy2618 5 SQPTTLYVGNLD--VSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLE--KEMKVNW 80 (390)
Q Consensus 5 ~~~~~l~v~nLp--~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~ 80 (390)
.+...|.++=|. ..+|-+-|..++...|+|..|.|.+. +.-.|.|||++.+.|.+|.++|||..+.. ++|+|++
T Consensus 118 ~pN~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIey 195 (494)
T KOG1456|consen 118 TPNKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEY 195 (494)
T ss_pred CCCeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccceeEEEEe
Confidence 345566666664 66999999999999999999887754 34489999999999999999999998653 8899999
Q ss_pred cCCCCCC------------------------C-----------------------------------------C------
Q psy2618 81 ASSPGNQ------------------------P-----------------------------------------K------ 89 (390)
Q Consensus 81 ~~~~~~~------------------------~-----------------------------------------~------ 89 (390)
+++..-+ . .
T Consensus 196 AkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~~~~~~~~ 275 (494)
T KOG1456|consen 196 AKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRYRDGYRDG 275 (494)
T ss_pred cCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCCccccccC
Confidence 9652100 0 0
Q ss_pred ------CCCCCceEEEEcCCC-cccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee
Q psy2618 90 ------QDTSNHYHIFVGDLS-PEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162 (390)
Q Consensus 90 ------~~~~~~~~l~v~nl~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 162 (390)
......+.++|.+|. ..++-+.|.++|..||.|+.|++++. ..|-|.|+..|..++++|+..|++..+
T Consensus 276 ~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkT-----k~gtamVemgd~~aver~v~hLnn~~l 350 (494)
T KOG1456|consen 276 RGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKT-----KPGTAMVEMGDAYAVERAVTHLNNIPL 350 (494)
T ss_pred CCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeec-----ccceeEEEcCcHHHHHHHHHHhccCcc
Confidence 000114678899998 45778899999999999999999986 456799999999999999999999999
Q ss_pred CCeeEEEeecCCCCCCCcccccccCC--------CCccccc----cccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCC
Q psy2618 163 GSRSIRTNWSTRKPPAMTNERKRQNS--------HTKTITF----DEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF 230 (390)
Q Consensus 163 ~g~~i~v~~~~~~~~~~~~~~~~~~~--------~~~~~~~----~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~ 230 (390)
.|.+|.|..+....-.....-..... ......+ ....+..-+++++|..-|.|..+||+.|..+|...
T Consensus 351 fG~kl~v~~SkQ~~v~~~~pflLpDgSpSfKdys~SkNnRFssp~qAsKNrIq~Ps~vLHffNaP~~vtEe~l~~i~nek 430 (494)
T KOG1456|consen 351 FGGKLNVCVSKQNFVSPVQPFLLPDGSPSFKDYSGSKNNRFSSPEQASKNRIQPPSNVLHFFNAPLGVTEEQLIGICNEK 430 (494)
T ss_pred ccceEEEeeccccccccCCceecCCCCcchhhcccccccccCChhHhhcccccCCcceeEEecCCCccCHHHHHHHhhhc
Confidence 99999999876542221111100000 0000111 11223455688999999999999999999999765
Q ss_pred Cc-eeEEEEecC----CCeEEEEecCHHHHHHHHHHhcCceecCe------EEEEEecccC
Q psy2618 231 GT-IVDIRVFKE----KGYAFVKFTTKETATHAIESIHNTDINGH------TVKCFWGKES 280 (390)
Q Consensus 231 g~-v~~~~~~~~----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~------~i~v~~~~~~ 280 (390)
+. -+++++... ...+.++|++.++|..|+..+|...+.+. .+++-|+.++
T Consensus 431 ~v~~~svkvFp~kserSssGllEfe~~s~Aveal~~~NH~pi~~p~gs~PfilKlcfsts~ 491 (494)
T KOG1456|consen 431 DVPPTSVKVFPLKSERSSSGLLEFENKSDAVEALMKLNHYPIEGPNGSFPFILKLCFSTSK 491 (494)
T ss_pred CCCcceEEeecccccccccceeeeehHHHHHHHHHHhccccccCCCCCCCeeeeeeecccc
Confidence 53 455666644 35789999999999999999999887653 3455555443
No 52
>KOG4206|consensus
Probab=99.81 E-value=2e-18 Score=138.92 Aligned_cols=183 Identities=21% Similarity=0.400 Sum_probs=146.0
Q ss_pred CCceEEEEcCCCcccCHHHHHH----HhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKE----AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~----~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
..+.+|||.||+..+..++|++ +|+.||.|..|...+ +.+.+|-|||.|.+.+.|..|+..|+|..+.|+.++
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~k---t~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mr 83 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFK---TPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMR 83 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecC---CCCccCceEEEecChhHHHHHHHHhcCCcccCchhh
Confidence 3345999999999999999888 999999999987765 446799999999999999999999999999999999
Q ss_pred EeecCCCCCCCcccccccCCCC------------cccccc---------cc----ccCCCCCcceeEEcCCCCCCcHHHH
Q psy2618 169 TNWSTRKPPAMTNERKRQNSHT------------KTITFD---------EV----YNQSSPTNCTVYCGGFGKDLNEELV 223 (390)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~------------~~~~~~---------~~----~~~~~~~~~~l~v~~l~~~~~~~~l 223 (390)
+.|+..+.+............. ...... .. .....+++..||+.|||..++.+.|
T Consensus 84 iqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~~~~~~ng~~~~~~~~~~p~p~~~~~~ppn~ilf~~niP~es~~e~l 163 (221)
T KOG4206|consen 84 IQYAKSDSDIIAQAPGTFVEKEKKINGEILARIKQPLDTNGHFYNMNRMNLPPPFLAQMAPPNNILFLTNIPSESESEML 163 (221)
T ss_pred eecccCccchhhccCceeccccCccccccccccCCcccccccccccccccCCCCccccCCCCceEEEEecCCcchhHHHH
Confidence 9999876554333111000000 000000 00 0234677889999999999999999
Q ss_pred HhhhcCCCceeEEEEecC-CCeEEEEecCHHHHHHHHHHhcCceec-CeEEEEEecc
Q psy2618 224 SKVFSPFGTIVDIRVFKE-KGYAFVKFTTKETATHAIESIHNTDIN-GHTVKCFWGK 278 (390)
Q Consensus 224 ~~~f~~~g~v~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 278 (390)
..+|++|...+.++++.. ++.+||+|.+...|..|...+.+..+. ...+.|.+++
T Consensus 164 ~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~ 220 (221)
T KOG4206|consen 164 SDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAK 220 (221)
T ss_pred HHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccC
Confidence 999999999999999986 789999999999999999999998875 7778887764
No 53
>KOG0147|consensus
Probab=99.79 E-value=1.1e-19 Score=163.28 Aligned_cols=181 Identities=24% Similarity=0.443 Sum_probs=148.8
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
..+...+++|+--|....++-+|.++|+.+|.|..+.++.|+.+++++|.|||+|.|.+.+..|+ .|.|..+.|..|.|
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~v 252 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIV 252 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHh-hhcCCcccCceeEe
Confidence 34455678888888888999999999999999999999999999999999999999999999999 88999999999999
Q ss_pred eecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CC
Q psy2618 170 NWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KG 243 (390)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g 243 (390)
.............. ..... .....+...|||+||..++++++|+.+|++||.|..|.+.++ +|
T Consensus 253 q~sEaeknr~a~~s----~a~~~-------k~~~~p~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skg 321 (549)
T KOG0147|consen 253 QLSEAEKNRAANAS----PALQG-------KGFTGPMRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKG 321 (549)
T ss_pred cccHHHHHHHHhcc----ccccc-------cccccchhhhhhcccccCchHHHHhhhccCcccceeeeeccccccccccC
Confidence 87654322211100 00000 001112223999999999999999999999999999999877 79
Q ss_pred eEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 244 YAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 244 ~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
|+||+|.+.++|.+|+..|||.++.|+.|+|......-.
T Consensus 322 fGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r~~ 360 (549)
T KOG0147|consen 322 FGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTERVD 360 (549)
T ss_pred cceEEEecHHHHHHHHHHhccceecCceEEEEEeeeecc
Confidence 999999999999999999999999999999988765543
No 54
>KOG0105|consensus
Probab=99.77 E-value=1.2e-17 Score=128.99 Aligned_cols=172 Identities=17% Similarity=0.260 Sum_probs=132.5
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
..+++|+|+|||.++-+.+|.++|.+||.|..|.+...+ ....||||+|+++.+|+.|+..-++..++|..|+|+++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~---g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfp 80 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRP---GPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFP 80 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCC---CCCCeeEEEecCccchhhhhhcccccccCcceEEEEec
Confidence 457899999999999999999999999999999885432 25789999999999999999998999999999999998
Q ss_pred CCCCCCCcccccccCCCCc-cccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecC
Q psy2618 173 TRKPPAMTNERKRQNSHTK-TITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTT 251 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~ 251 (390)
................... ......-..........|.|.+||.+.+++||++....-|.|....+.++ |.+.|+|..
T Consensus 81 rggr~s~~~~G~y~gggrgGgg~gg~rgppsrrSe~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD-g~GvV~~~r 159 (241)
T KOG0105|consen 81 RGGRSSSDRRGSYSGGGRGGGGGGGRRGPPSRRSEYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD-GVGVVEYLR 159 (241)
T ss_pred cCCCcccccccccCCCCCCCCCCCcccCCcccccceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc-cceeeeeee
Confidence 7654221111100000000 00000001122223457999999999999999999999999999998877 489999999
Q ss_pred HHHHHHHHHHhcCceec
Q psy2618 252 KETATHAIESIHNTDIN 268 (390)
Q Consensus 252 ~~~a~~a~~~l~~~~~~ 268 (390)
.|+.+-|+..|....+.
T Consensus 160 ~eDMkYAvr~ld~~~~~ 176 (241)
T KOG0105|consen 160 KEDMKYAVRKLDDQKFR 176 (241)
T ss_pred hhhHHHHHHhhcccccc
Confidence 99999999999877653
No 55
>KOG1457|consensus
Probab=99.77 E-value=8.2e-18 Score=133.92 Aligned_cols=155 Identities=21% Similarity=0.334 Sum_probs=123.2
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC----CCCeEEEEEccHHHHHHHHHHhcCeeec---ccee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG----NDPYAFLEFVHHTVAATALAAMNKRVFL---EKEM 76 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~----~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~~l 76 (390)
-...|||||.+||.++...||+.+|+.|-..+...+....+ .+.+|||.|.+..+|..|+++|||..|+ +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 34589999999999999999999999997666655543332 3479999999999999999999999986 6889
Q ss_pred eEeecCCCCCCCCCCC----------------------------------------------------------------
Q psy2618 77 KVNWASSPGNQPKQDT---------------------------------------------------------------- 92 (390)
Q Consensus 77 ~v~~~~~~~~~~~~~~---------------------------------------------------------------- 92 (390)
+|+.+++.++......
T Consensus 111 hiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~~ 190 (284)
T KOG1457|consen 111 HIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSKA 190 (284)
T ss_pred EeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhcC
Confidence 9999976543211000
Q ss_pred -----------------CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHH
Q psy2618 93 -----------------SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155 (390)
Q Consensus 93 -----------------~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 155 (390)
....+|||.||..+++|++|+.+|+.|--...+++... .....||++|.+.+.|..|+.
T Consensus 191 P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~----~g~~vaf~~~~~~~~at~am~ 266 (284)
T KOG1457|consen 191 PSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRAR----GGMPVAFADFEEIEQATDAMN 266 (284)
T ss_pred CcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecC----CCcceEeecHHHHHHHHHHHH
Confidence 00468999999999999999999999977655555321 235579999999999999999
Q ss_pred HhcCcee
Q psy2618 156 AMNGQWL 162 (390)
Q Consensus 156 ~l~~~~~ 162 (390)
.|.|..+
T Consensus 267 ~lqg~~~ 273 (284)
T KOG1457|consen 267 HLQGNLL 273 (284)
T ss_pred Hhhccee
Confidence 9998766
No 56
>KOG4211|consensus
Probab=99.76 E-value=1.1e-16 Score=142.22 Aligned_cols=172 Identities=22% Similarity=0.328 Sum_probs=134.8
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.......|.+++|||++|+++|.+||+.++ |+++.+.+ .+|+..|-|||+|.+.+++++|+++ +...+..|.|.|.
T Consensus 6 e~~~~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r--~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf 81 (510)
T KOG4211|consen 6 EGSTAFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPR--RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVF 81 (510)
T ss_pred CCCcceEEEecCCCccccHHHHHHHHhcCc-eeEEEEec--cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEE
Confidence 345567899999999999999999999986 67755544 5789999999999999999999965 8888999999999
Q ss_pred ecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeE-EEEe-----cCCCe
Q psy2618 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVD-IRVF-----KEKGY 244 (390)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~-----~~~g~ 244 (390)
.+.............. ........|.+++||+.|+++||.+||+..-.|.+ +-++ +..|.
T Consensus 82 ~~~~~e~d~~~~~~g~--------------~s~~~d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGE 147 (510)
T KOG4211|consen 82 TAGGAEADWVMRPGGP--------------NSSANDGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGE 147 (510)
T ss_pred ccCCccccccccCCCC--------------CCCCCCceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccc
Confidence 8765544222211111 11134457999999999999999999998876665 2233 22689
Q ss_pred EEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 245 ~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
|||+|++.+.|++|+.. |...|..+.|+|..+...+
T Consensus 148 AfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e 183 (510)
T KOG4211|consen 148 AFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAE 183 (510)
T ss_pred eEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHH
Confidence 99999999999999985 6667999999997765543
No 57
>KOG1457|consensus
Probab=99.74 E-value=1.4e-16 Score=127.02 Aligned_cols=178 Identities=15% Similarity=0.231 Sum_probs=130.0
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCC-CCCcEEEEEecCHHHHHHHHHHhcCceeC---Ce
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL-KSKGYAFVSFVKKAEAENAITAMNGQWLG---SR 165 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g-~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~ 165 (390)
.....-++|||.|||.++...+|..+|..|--.+.+.+......+ ..+-+||++|.+..+|..|++.|+|..++ +.
T Consensus 29 ~~~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~s 108 (284)
T KOG1457|consen 29 DEPGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGS 108 (284)
T ss_pred ccccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCc
Confidence 345567999999999999999999999999777777665543332 35689999999999999999999999885 67
Q ss_pred eEEEeecCCCCCCCcccccccCCCCcc--------c--------------ccc---------------------------
Q psy2618 166 SIRTNWSTRKPPAMTNERKRQNSHTKT--------I--------------TFD--------------------------- 196 (390)
Q Consensus 166 ~i~v~~~~~~~~~~~~~~~~~~~~~~~--------~--------------~~~--------------------------- 196 (390)
.|+++++.................... . ...
T Consensus 109 tLhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~ 188 (284)
T KOG1457|consen 109 TLHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDS 188 (284)
T ss_pred eeEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhh
Confidence 888888765433222111110000000 0 000
Q ss_pred ------------ccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCC--CeEEEEecCHHHHHHHHHHh
Q psy2618 197 ------------EVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK--GYAFVKFTTKETATHAIESI 262 (390)
Q Consensus 197 ------------~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~--g~~fv~f~~~~~a~~a~~~l 262 (390)
.........+++|||.||..+++|++|+.+|+.|.....++|.... ..+|++|++.+.|..|+..|
T Consensus 189 ~~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~l 268 (284)
T KOG1457|consen 189 KAPSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHL 268 (284)
T ss_pred cCCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHh
Confidence 0001112235689999999999999999999999988777776554 47899999999999999999
Q ss_pred cCcee
Q psy2618 263 HNTDI 267 (390)
Q Consensus 263 ~~~~~ 267 (390)
+|..+
T Consensus 269 qg~~~ 273 (284)
T KOG1457|consen 269 QGNLL 273 (284)
T ss_pred hccee
Confidence 88755
No 58
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.74 E-value=3.1e-17 Score=128.76 Aligned_cols=86 Identities=33% Similarity=0.606 Sum_probs=81.0
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+||++++++++|+++|++||.|.++.++.++.+++++|||||+|.+.++|+.|++.|++..+.|+.|+|++
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~ 110 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNP 110 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEe
Confidence 45578999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy2618 172 STRKPP 177 (390)
Q Consensus 172 ~~~~~~ 177 (390)
+..+..
T Consensus 111 a~~~~~ 116 (144)
T PLN03134 111 ANDRPS 116 (144)
T ss_pred CCcCCC
Confidence 976544
No 59
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.72 E-value=4.2e-17 Score=128.01 Aligned_cols=81 Identities=23% Similarity=0.394 Sum_probs=75.1
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
..+++|||+|||+++++++|+++|+.||.|.+|+++.++. +++||||+|++.++|++|++.||+..+.|+.|+|+++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a 111 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPA 111 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeC
Confidence 4578999999999999999999999999999999998763 6899999999999999999999999999999999999
Q ss_pred CCCC
Q psy2618 82 SSPG 85 (390)
Q Consensus 82 ~~~~ 85 (390)
..+.
T Consensus 112 ~~~~ 115 (144)
T PLN03134 112 NDRP 115 (144)
T ss_pred CcCC
Confidence 7643
No 60
>KOG0106|consensus
Probab=99.71 E-value=2.5e-17 Score=134.21 Aligned_cols=166 Identities=19% Similarity=0.385 Sum_probs=134.3
Q ss_pred EEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCC
Q psy2618 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176 (390)
Q Consensus 97 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 176 (390)
.+||++|++.+.+.+|.++|..||.+..+.+. .||+||+|.+..+|..|+..+++..+.+-.+.|+++....
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk--------~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~ 74 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK--------NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKR 74 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee--------cccceeccCchhhhhcccchhcCceecceeeeeecccccc
Confidence 58999999999999999999999999998773 5789999999999999999999999999889999887543
Q ss_pred CCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHH
Q psy2618 177 PAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETAT 256 (390)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~ 256 (390)
......... ..............+.+.|+|.+++..+.+.+|.+.|+++|.+....+ .++++||+|...++|.
T Consensus 75 ~~~g~~~~g-----~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--~~~~~~v~Fs~~~da~ 147 (216)
T KOG0106|consen 75 RGRGRPRGG-----DRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--RRNFAFVEFSEQEDAK 147 (216)
T ss_pred cccCCCCCC-----CccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--hccccceeehhhhhhh
Confidence 222000000 000011222233456678999999999999999999999999955544 6789999999999999
Q ss_pred HHHHHhcCceecCeEEEEEec
Q psy2618 257 HAIESIHNTDINGHTVKCFWG 277 (390)
Q Consensus 257 ~a~~~l~~~~~~g~~i~v~~~ 277 (390)
+|+..|++..+.++.|++...
T Consensus 148 ra~~~l~~~~~~~~~l~~~~~ 168 (216)
T KOG0106|consen 148 RALEKLDGKKLNGRRISVEKN 168 (216)
T ss_pred hcchhccchhhcCceeeeccc
Confidence 999999999999999999443
No 61
>KOG0106|consensus
Probab=99.71 E-value=2.1e-17 Score=134.59 Aligned_cols=153 Identities=22% Similarity=0.433 Sum_probs=131.3
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC---
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP--- 84 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~--- 84 (390)
.+|||++||+.+.+++|+.||..||.|.++.++. +|+||+|.+..+|+.|+..|++..+++..+.+.++...
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~-----gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~~~~ 76 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKN-----GFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGKRRG 76 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeec-----ccceeccCchhhhhcccchhcCceecceeeeeecccccccc
Confidence 5799999999999999999999999999998753 48999999999999999999999999988999998742
Q ss_pred ---CC---CC------CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHH
Q psy2618 85 ---GN---QP------KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152 (390)
Q Consensus 85 ---~~---~~------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~ 152 (390)
.. +. .......+.+.|.+++..+.+.+|.+.|..+|.+....+ ..+++||+|...+++.+
T Consensus 77 ~g~~~~g~r~~~~~~~~~p~~s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~--------~~~~~~v~Fs~~~da~r 148 (216)
T KOG0106|consen 77 RGRPRGGDRRSDSRRYRPPSRTHFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDA--------RRNFAFVEFSEQEDAKR 148 (216)
T ss_pred cCCCCCCCccchhhccCCcccccceeeeccchhhhhHHHHhhhhcccCCCchhhh--------hccccceeehhhhhhhh
Confidence 10 01 112445788999999999999999999999999844433 36689999999999999
Q ss_pred HHHHhcCceeCCeeEEEeecC
Q psy2618 153 AITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 153 a~~~l~~~~~~g~~i~v~~~~ 173 (390)
|+..|++..+.++.|.+....
T Consensus 149 a~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 149 ALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred cchhccchhhcCceeeecccC
Confidence 999999999999999995544
No 62
>KOG0125|consensus
Probab=99.64 E-value=6.2e-16 Score=130.33 Aligned_cols=80 Identities=23% Similarity=0.319 Sum_probs=75.0
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
-.++|+|+|||+...+-||+.+|++||+|++|.|+.+.+ +|||+||+|++.++|++|.++|+|+++.|++|.|..+..+
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 357999999999999999999999999999999997765 8999999999999999999999999999999999999875
Q ss_pred C
Q psy2618 85 G 85 (390)
Q Consensus 85 ~ 85 (390)
-
T Consensus 175 V 175 (376)
T KOG0125|consen 175 V 175 (376)
T ss_pred h
Confidence 3
No 63
>KOG1548|consensus
Probab=99.63 E-value=1.6e-14 Score=122.77 Aligned_cols=166 Identities=19% Similarity=0.348 Sum_probs=134.3
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCce--------EEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccce
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVK--------GCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKE 75 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~--------~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~ 75 (390)
-++.|||+|||.++|.+++.++|+++|.|. .|++-+++. -+|=|.|.|-..++++.|++.|++..+.|+.
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~ 212 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKK 212 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccCcE
Confidence 356799999999999999999999999763 466666554 5789999999999999999999999999999
Q ss_pred eeEeecCCCCC-----------------------------CC----CCCCCCceEEEEcCCC----cccC-------HHH
Q psy2618 76 MKVNWASSPGN-----------------------------QP----KQDTSNHYHIFVGDLS----PEIE-------TQT 111 (390)
Q Consensus 76 l~v~~~~~~~~-----------------------------~~----~~~~~~~~~l~v~nl~----~~~~-------~~~ 111 (390)
|+|+.|..... +. .......++|.+.|+= ...+ .++
T Consensus 213 ~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlked 292 (382)
T KOG1548|consen 213 LRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLKED 292 (382)
T ss_pred EEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHHHH
Confidence 99999964211 00 1122346789998882 2223 356
Q ss_pred HHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 112 l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
|++-..+||.|.+|.|.-. .+.|.+-|.|.+.++|..|++.|+|..++||.|..+....+
T Consensus 293 l~eec~K~G~v~~vvv~d~----hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~ 352 (382)
T KOG1548|consen 293 LTEECEKFGQVRKVVVYDR----HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGK 352 (382)
T ss_pred HHHHHHHhCCcceEEEecc----CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCc
Confidence 6777899999999977543 46889999999999999999999999999999999877654
No 64
>KOG0122|consensus
Probab=99.63 E-value=1.7e-15 Score=122.73 Aligned_cols=84 Identities=33% Similarity=0.575 Sum_probs=80.4
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
.++.++|.|.||+.++++++|.++|.+||.|..+.+.+|+.||.++|||||+|.+.++|.+|++.|+|.-.+.-.|+|+|
T Consensus 186 R~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEw 265 (270)
T KOG0122|consen 186 RDDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEW 265 (270)
T ss_pred CCccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEe
Confidence 34678899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy2618 172 STRK 175 (390)
Q Consensus 172 ~~~~ 175 (390)
+.+.
T Consensus 266 skP~ 269 (270)
T KOG0122|consen 266 SKPS 269 (270)
T ss_pred cCCC
Confidence 9865
No 65
>KOG0107|consensus
Probab=99.62 E-value=1.1e-15 Score=117.38 Aligned_cols=82 Identities=28% Similarity=0.449 Sum_probs=74.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+..-.++|||+||+..+++.||+..|..||+|.+||+..++ .|||||||++..+|+.|+..|+|+.|+|..|.|+.+.
T Consensus 6 ~~~~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP--PGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 6 DRNGNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP--PGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred ccCCCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC--CCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 44557999999999999999999999999999999998754 5799999999999999999999999999999999987
Q ss_pred CCCC
Q psy2618 83 SPGN 86 (390)
Q Consensus 83 ~~~~ 86 (390)
-...
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6443
No 66
>KOG1548|consensus
Probab=99.62 E-value=3e-14 Score=121.19 Aligned_cols=188 Identities=19% Similarity=0.270 Sum_probs=140.5
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCee--------EEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCC
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEIS--------NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS 164 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 164 (390)
.-+..|||.|||.++|.+++.++|+++|.|. .|++.++.. |..+|-|.+.|.-.+++..|++.|++..+.|
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~-G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg 210 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ-GKLKGDALCCYIKRESVELAIKILDEDELRG 210 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC-CCccCceEEEeecccHHHHHHHHhCcccccC
Confidence 4467799999999999999999999999763 356777744 7899999999999999999999999999999
Q ss_pred eeEEEeecCCCCCCCcccccccC-CCC--------ccc----cccccccCCCCCcceeEEcCCCC----CCc-------H
Q psy2618 165 RSIRTNWSTRKPPAMTNERKRQN-SHT--------KTI----TFDEVYNQSSPTNCTVYCGGFGK----DLN-------E 220 (390)
Q Consensus 165 ~~i~v~~~~~~~~~~~~~~~~~~-~~~--------~~~----~~~~~~~~~~~~~~~l~v~~l~~----~~~-------~ 220 (390)
+.|+|+.+.-............. ... ... .......+.....++|.+.|+=. ..+ .
T Consensus 211 ~~~rVerAkfq~Kge~~~~~k~k~k~~~~kk~~k~q~k~~dw~pd~~~~sk~r~~~tVi~kn~Ftp~~~~~~~~l~~dlk 290 (382)
T KOG1548|consen 211 KKLRVERAKFQMKGEYDASKKEKGKCKDKKKLKKQQQKLLDWRPDRDDPSKARADRTVILKNMFTPEDFEKNPDLLNDLK 290 (382)
T ss_pred cEEEEehhhhhhccCcCcccccccccccHHHHHHHHHhhcccCCCccccccccCCcEEEeeecCCHHHhccCHHHHHHHH
Confidence 99999987532111111000000 000 000 00111223344567888888732 122 4
Q ss_pred HHHHhhhcCCCceeEEEEe--cCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 221 ELVSKVFSPFGTIVDIRVF--KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 221 ~~l~~~f~~~g~v~~~~~~--~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
++|++-+++||.|.+|.|. .+.|.+-|.|.+.++|..|++.|+|+.++||.|..+....+.
T Consensus 291 edl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~DG~t 353 (382)
T KOG1548|consen 291 EDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIWDGKT 353 (382)
T ss_pred HHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEeCCcc
Confidence 6777889999999999998 558999999999999999999999999999999998766543
No 67
>KOG0149|consensus
Probab=99.62 E-value=7.1e-16 Score=124.48 Aligned_cols=79 Identities=33% Similarity=0.505 Sum_probs=73.5
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
.++|||+||+|++..++|+++|++||+|++..|+.|+.+|+++||+||+|+|.++|.+|++. .+-.|+||+..++++.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhhh
Confidence 57899999999999999999999999999999999999999999999999999999999975 56789999988887754
No 68
>KOG4212|consensus
Probab=99.62 E-value=4.1e-14 Score=123.74 Aligned_cols=189 Identities=16% Similarity=0.275 Sum_probs=141.6
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCC-CCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.....+.+||.|||++..+.+|+++|.. -|+|+-|.+..| .+|+++|+|.|+|+++|.+++|++.|+.+.+.||.|.|
T Consensus 40 ~~~r~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D-~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 40 VAARDRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFD-ESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred cccccceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecc-cCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 3445678999999999999999999975 788999999988 56799999999999999999999999999999999998
Q ss_pred eecCCCCCCCcc----------------------------------------cccccCCCCcccc---------------
Q psy2618 170 NWSTRKPPAMTN----------------------------------------ERKRQNSHTKTIT--------------- 194 (390)
Q Consensus 170 ~~~~~~~~~~~~----------------------------------------~~~~~~~~~~~~~--------------- 194 (390)
+--......... ...+.+.......
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 754331100000 0000000000000
Q ss_pred ----ccc-cccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-----CCeEEEEecCHHHHHHHHHHhcC
Q psy2618 195 ----FDE-VYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFVKFTTKETATHAIESIHN 264 (390)
Q Consensus 195 ----~~~-~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~ 264 (390)
+.. ...-..+...++||+||...+....|++.|.--|.|..+.+--+ +|++.++|+++-+|..|+..+++
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 000 11113345668999999999999999999999999988766533 79999999999999999999998
Q ss_pred ceecCeEEEEEecccC
Q psy2618 265 TDINGHTVKCFWGKES 280 (390)
Q Consensus 265 ~~~~g~~i~v~~~~~~ 280 (390)
.-+..++..+.+.+-.
T Consensus 279 ~g~~~~~~~~Rl~~~~ 294 (608)
T KOG4212|consen 279 QGLFDRRMTVRLDRIP 294 (608)
T ss_pred CCCccccceeeccccc
Confidence 7667777777765433
No 69
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.62 E-value=1.8e-15 Score=104.58 Aligned_cols=68 Identities=40% Similarity=0.600 Sum_probs=63.1
Q ss_pred EEEeCCChhccHHHHHHHhcccCCceEEEEeec--CCCCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 10 l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~--~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
|||+|||.++++++|+++|+.||.|..+++..+ +..+++|||+|.+.++|+.|++.+++..+.|++|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999886 23567999999999999999999999999999875
No 70
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.61 E-value=4.3e-15 Score=124.52 Aligned_cols=79 Identities=22% Similarity=0.263 Sum_probs=73.7
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPG 85 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 85 (390)
..++|||+|||+.+++++|+++|+.||+|.+|++..++..+|||||+|++.++|+.||. |++..+.|+.|.|.++....
T Consensus 3 ~~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~~~ 81 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAEDYQ 81 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccCCC
Confidence 36899999999999999999999999999999999988778999999999999999995 99999999999999987543
No 71
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.58 E-value=9.8e-15 Score=100.83 Aligned_cols=70 Identities=39% Similarity=0.809 Sum_probs=66.7
Q ss_pred EEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 98 l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
|||+|||.++++++|+++|+.||.|..+.+..+ .++..+++|||+|.+.++|++|++.+++..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~-~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRN-SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEE-TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccc-ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 799999999999999999999999999999988 6778999999999999999999999999999999885
No 72
>KOG0122|consensus
Probab=99.57 E-value=1.3e-14 Score=117.73 Aligned_cols=80 Identities=26% Similarity=0.438 Sum_probs=75.4
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+++++|.|+||+.++++++|+++|..||.|..|.+.+|+. +||||||.|.+.++|.+||+.|||.-+.+--|+|+|+
T Consensus 187 ~D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrvEws 266 (270)
T KOG0122|consen 187 DDEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRVEWS 266 (270)
T ss_pred CccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEEEec
Confidence 4788999999999999999999999999999999999875 7899999999999999999999999999999999999
Q ss_pred CCC
Q psy2618 82 SSP 84 (390)
Q Consensus 82 ~~~ 84 (390)
++.
T Consensus 267 kP~ 269 (270)
T KOG0122|consen 267 KPS 269 (270)
T ss_pred CCC
Confidence 874
No 73
>KOG0125|consensus
Probab=99.55 E-value=1.7e-14 Score=121.83 Aligned_cols=85 Identities=22% Similarity=0.436 Sum_probs=78.1
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
++..+..++|+|+|||+..-|.||+..|++||.|.+|.|+.+.+. +|||+||+|++++||++|.++|+|..+.||+|+
T Consensus 90 s~s~~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG--SKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 90 SSSKDTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG--SKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC--CCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 445566789999999999999999999999999999999987543 899999999999999999999999999999999
Q ss_pred EeecCCC
Q psy2618 169 TNWSTRK 175 (390)
Q Consensus 169 v~~~~~~ 175 (390)
|+.++.+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998866
No 74
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.55 E-value=2.2e-14 Score=98.90 Aligned_cols=68 Identities=32% Similarity=0.549 Sum_probs=61.2
Q ss_pred EEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 10 l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
|+|+|||+++++++|+++|+.+|.|..+++..++. .+++|||+|.+.++|.+|++.+++..+.|++|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999998754 457999999999999999999998999999874
No 75
>KOG0149|consensus
Probab=99.54 E-value=4e-14 Score=114.45 Aligned_cols=73 Identities=30% Similarity=0.561 Sum_probs=66.8
Q ss_pred cceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 206 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
-++||||+|++.+..|+|+++|++||+|+++.|+.| ||+|||+|.|.++|.+|++..+- .|+||+..|+++.-
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp~p-iIdGR~aNcnlA~l 90 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDPNP-IIDGRKANCNLASL 90 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCCCC-cccccccccchhhh
Confidence 367999999999999999999999999999999965 79999999999999999997655 49999999998866
No 76
>KOG0114|consensus
Probab=99.54 E-value=3.1e-14 Score=99.39 Aligned_cols=79 Identities=18% Similarity=0.227 Sum_probs=73.9
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.-.+.|||+|||.++|.++..++|.+||+|..|++-..+..+|.|||-|++..+|.+|+++|+|..+.++.+.|-+..+
T Consensus 16 evnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~ 94 (124)
T KOG0114|consen 16 EVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQP 94 (124)
T ss_pred hhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCH
Confidence 3467899999999999999999999999999999988888999999999999999999999999999999999987754
No 77
>KOG0121|consensus
Probab=99.54 E-value=1.7e-14 Score=104.79 Aligned_cols=81 Identities=26% Similarity=0.495 Sum_probs=76.3
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
.+++|||+||++.++||.|.++|+++|+|..|.+=.|+.+..+.|||||+|.+.++|..|++-+++..++.+.|++.|-.
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~ 114 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDA 114 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeeccc
Confidence 46899999999999999999999999999999988888888899999999999999999999999999999999999865
Q ss_pred C
Q psy2618 174 R 174 (390)
Q Consensus 174 ~ 174 (390)
.
T Consensus 115 G 115 (153)
T KOG0121|consen 115 G 115 (153)
T ss_pred c
Confidence 3
No 78
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=6.1e-14 Score=96.70 Aligned_cols=70 Identities=27% Similarity=0.681 Sum_probs=64.7
Q ss_pred EEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 98 l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
|+|+|||+.+++++|+++|+.+|.|..+.+..++. ++.+++|||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~-~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD-GQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT-SSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec-cccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 79999999999999999999999999999999877 88999999999999999999999999999999874
No 79
>KOG0121|consensus
Probab=99.53 E-value=2e-14 Score=104.52 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCC---CCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~---~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
.+.++||||+||+..++|+.|.++|+.+|+|..|.+--|+.. =|||||+|.+.++|+.|++.++++.+..+.|.+.|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~ 112 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDW 112 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccceeeec
Confidence 357899999999999999999999999999998877665532 37999999999999999999999999999999998
Q ss_pred cC
Q psy2618 81 AS 82 (390)
Q Consensus 81 ~~ 82 (390)
..
T Consensus 113 D~ 114 (153)
T KOG0121|consen 113 DA 114 (153)
T ss_pred cc
Confidence 75
No 80
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.53 E-value=1.3e-13 Score=123.44 Aligned_cols=148 Identities=26% Similarity=0.394 Sum_probs=115.3
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.++|||+|||.++++++|+++|..||.|..+.+..++ ..+|+|||+|.+.++|..|++.+++..|.|+.|.|.++..
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 5999999999999999999999999999999998885 4789999999999999999999999999999999999642
Q ss_pred ----CCCCC---------------CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEe
Q psy2618 84 ----PGNQP---------------KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144 (390)
Q Consensus 84 ----~~~~~---------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f 144 (390)
..... .........+++.+++..++..++...|..+|.+....+.............++.+
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (306)
T COG0724 195 ASQPRSELSNNLDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDGKIPKSRSFVGN 274 (306)
T ss_pred ccccccccccccchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCCCCCcccccccccch
Confidence 11111 11233467899999999999999999999999996666655433333333333444
Q ss_pred cCHHHHHHHH
Q psy2618 145 VKKAEAENAI 154 (390)
Q Consensus 145 ~~~~~a~~a~ 154 (390)
.....+....
T Consensus 275 ~~~~~~~~~~ 284 (306)
T COG0724 275 EASKDALESN 284 (306)
T ss_pred hHHHhhhhhh
Confidence 3333333333
No 81
>KOG0107|consensus
Probab=99.53 E-value=2.6e-14 Score=110.02 Aligned_cols=79 Identities=28% Similarity=0.586 Sum_probs=73.6
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
-.++|||+||+..+++.+|...|..||.|.+++|.+. +.|||||+|+++.+|++|+..|++..|.|..|+|+.+.
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArn-----PPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARN-----PPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeec-----CCCceEEeccCcccHHHHHhhcCCccccCceEEEEeec
Confidence 3689999999999999999999999999999999874 68999999999999999999999999999999999987
Q ss_pred CCCC
Q psy2618 174 RKPP 177 (390)
Q Consensus 174 ~~~~ 177 (390)
....
T Consensus 84 G~~r 87 (195)
T KOG0107|consen 84 GRPR 87 (195)
T ss_pred CCcc
Confidence 6644
No 82
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.50 E-value=8.7e-14 Score=114.67 Aligned_cols=77 Identities=19% Similarity=0.246 Sum_probs=72.0
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.-.+|+|+||++.+++++|++||+.||+|.+|+++.++..+++|||+|++.++|+.|+ .|+|..|.++.|.|.....
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 3479999999999999999999999999999999999888889999999999999999 5899999999999998764
No 83
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.50 E-value=3.3e-13 Score=120.73 Aligned_cols=145 Identities=27% Similarity=0.419 Sum_probs=114.2
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
.++|||+|||.++++++|.++|..||.|..+.+..++.+++++|||||+|.+.++|..|++.+++..+.|+.|.|.+...
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 69999999999999999999999999999999999998999999999999999999999999999999999999999653
Q ss_pred -CCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC
Q psy2618 175 -KPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241 (390)
Q Consensus 175 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~ 241 (390)
.......... ......................+++.+++..++..++...|..+|.+....+...
T Consensus 195 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 195 ASQPRSELSNN--LDASFAKKLSRGKALLLEKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccccccccc--cchhhhccccccccccccccceeeccccccccchhHHHHhccccccceeeeccCC
Confidence 1111111000 0000000011222334445678999999999999999999999999977777655
No 84
>KOG0113|consensus
Probab=99.50 E-value=7.5e-14 Score=116.44 Aligned_cols=86 Identities=27% Similarity=0.429 Sum_probs=80.8
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
..++-+||||+-|+.+++|.+|+..|+.||+|+.|.|+++..||+++|||||+|.+..+...|.+..++..|+|+.|.|.
T Consensus 97 ~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VD 176 (335)
T KOG0113|consen 97 IGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVD 176 (335)
T ss_pred cCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEE
Confidence 34778999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
+-....
T Consensus 177 vERgRT 182 (335)
T KOG0113|consen 177 VERGRT 182 (335)
T ss_pred eccccc
Confidence 765543
No 85
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.47 E-value=3.4e-13 Score=113.23 Aligned_cols=77 Identities=19% Similarity=0.273 Sum_probs=71.1
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
.++|||+||++.+++++|+++|+.||.|.+|.++++.. ++|||||+|.+.++|+.|+ .|++..+.|+.|.|.++..
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~---~~GfAFVtF~d~eaAe~Al-lLnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE---RSQIAYVTFKDPQGAETAL-LLSGATIVDQSVTITPAED 79 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC---CCCEEEEEeCcHHHHHHHH-HhcCCeeCCceEEEEeccC
Confidence 47899999999999999999999999999999998853 5799999999999999999 5899999999999999864
Q ss_pred C
Q psy2618 175 K 175 (390)
Q Consensus 175 ~ 175 (390)
.
T Consensus 80 ~ 80 (260)
T PLN03120 80 Y 80 (260)
T ss_pred C
Confidence 4
No 86
>PLN03213 repressor of silencing 3; Provisional
Probab=99.47 E-value=1.7e-13 Score=121.77 Aligned_cols=79 Identities=23% Similarity=0.393 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccH--HHHHHHHHHhcCeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHH--TVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~--~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+....+|||+||+++++++||+.+|..||.|.+|.|++... ||||||+|.+. +++.+||+.|||..|.|+.|+|..+
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETG-RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKA 85 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKG-RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKA 85 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccC-CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeec
Confidence 34567999999999999999999999999999999996654 99999999988 7899999999999999999999999
Q ss_pred CC
Q psy2618 82 SS 83 (390)
Q Consensus 82 ~~ 83 (390)
++
T Consensus 86 KP 87 (759)
T PLN03213 86 KE 87 (759)
T ss_pred cH
Confidence 75
No 87
>KOG4207|consensus
Probab=99.47 E-value=1e-13 Score=109.47 Aligned_cols=88 Identities=31% Similarity=0.524 Sum_probs=81.2
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.+.+.-.+|.|-||...++.++|+.+|++||.|-+|.|.+|+.|+.++|||||.|.+..+|++|++.|+|.+++|+.|.|
T Consensus 8 Pdv~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrV 87 (256)
T KOG4207|consen 8 PDVEGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRV 87 (256)
T ss_pred CCcccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeee
Confidence 34556678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q psy2618 170 NWSTRKPP 177 (390)
Q Consensus 170 ~~~~~~~~ 177 (390)
..+.-...
T Consensus 88 q~arygr~ 95 (256)
T KOG4207|consen 88 QMARYGRP 95 (256)
T ss_pred hhhhcCCC
Confidence 98765433
No 88
>KOG0114|consensus
Probab=99.46 E-value=6.8e-13 Score=92.78 Aligned_cols=84 Identities=19% Similarity=0.347 Sum_probs=75.6
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
..+....+.|||+|||+.+|.++..++|.+||.|..|++=.++.| +|.|||.|.+..+|++|++.|+|..+.++.+.
T Consensus 12 rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T---rGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~ 88 (124)
T KOG0114|consen 12 RLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET---RGTAFVVYEDIFDAKKACDHLSGYNVDNRYLV 88 (124)
T ss_pred CCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc---CceEEEEehHhhhHHHHHHHhcccccCCceEE
Confidence 345566789999999999999999999999999999998766554 89999999999999999999999999999999
Q ss_pred EeecCCC
Q psy2618 169 TNWSTRK 175 (390)
Q Consensus 169 v~~~~~~ 175 (390)
|.+-.+.
T Consensus 89 vlyyq~~ 95 (124)
T KOG0114|consen 89 VLYYQPE 95 (124)
T ss_pred EEecCHH
Confidence 9987654
No 89
>KOG1365|consensus
Probab=99.46 E-value=1.4e-13 Score=118.47 Aligned_cols=165 Identities=15% Similarity=0.178 Sum_probs=124.9
Q ss_pred CCeEEEeCCChhccHHHHHHHhcc---c-CCceEEEEee--cCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQ---I-GPVKGCKVIR--EPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~---~-G~v~~v~~~~--~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
--.|++|+||.++++.||.+||.. . |.++.|-+++ |++-.|-|||.|..+++|..||.+ |...+.-+.|.+-.
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElFR 239 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELFR 239 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHHH
Confidence 457899999999999999999962 1 2345565554 344568999999999999999986 44344445555544
Q ss_pred cCCC--------------------------CCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCC-eeE--EEEeeCC
Q psy2618 81 ASSP--------------------------GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE-ISN--CRIVRDP 131 (390)
Q Consensus 81 ~~~~--------------------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~--~~~~~~~ 131 (390)
+... ..+.........+|.+++||.+.+.|+|.++|..|-. |.- +.++.+
T Consensus 240 STaaEvqqvlnr~~s~pLi~~~~sp~~p~~p~~~~p~~~~kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N- 318 (508)
T KOG1365|consen 240 STAAEVQQVLNREVSEPLIPGLTSPLLPGGPARLVPPTRSKDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLN- 318 (508)
T ss_pred HhHHHHHHHHHhhccccccCCCCCCCCCCCccccCCCCCCCCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEc-
Confidence 4321 0112223444778999999999999999999999865 333 666665
Q ss_pred CCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 132 QTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 132 ~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
.-|++.|-|||+|.+.++|..|....+++....|.|.|.-++
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 457899999999999999999999989888888999887554
No 90
>KOG0126|consensus
Probab=99.44 E-value=2.4e-14 Score=110.73 Aligned_cols=84 Identities=27% Similarity=0.473 Sum_probs=78.5
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
..++--|||+|||++.||.||.-.|++||+|.+|.+++|..||+++||||+.|.+..+...|+..|+|..|.||.|+|..
T Consensus 32 YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDH 111 (219)
T KOG0126|consen 32 YKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDH 111 (219)
T ss_pred cccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEeee
Confidence 45567899999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred cCCC
Q psy2618 172 STRK 175 (390)
Q Consensus 172 ~~~~ 175 (390)
....
T Consensus 112 v~~Y 115 (219)
T KOG0126|consen 112 VSNY 115 (219)
T ss_pred cccc
Confidence 5433
No 91
>smart00362 RRM_2 RNA recognition motif.
Probab=99.43 E-value=8e-13 Score=91.48 Aligned_cols=71 Identities=37% Similarity=0.587 Sum_probs=64.5
Q ss_pred eEEEeCCChhccHHHHHHHhcccCCceEEEEeecC-CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~-~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+|+|+|||.++++++|+++|+.||+|..+++..+. .++++|||+|.+.++|++|++.+++..+.|+++.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 68999999999999999999999999999888664 356899999999999999999999999999888763
No 92
>KOG0132|consensus
Probab=99.42 E-value=6.2e-12 Score=117.83 Aligned_cols=79 Identities=25% Similarity=0.539 Sum_probs=74.2
Q ss_pred CcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCC
Q psy2618 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283 (390)
Q Consensus 205 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 283 (390)
.+++||||+|+.++++.||..+|+.||+|.+|.++.++++|||++.+..+|.+|+.+|+...+.++.|+|.|+......
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~k 498 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPK 498 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcc
Confidence 3579999999999999999999999999999999999999999999999999999999999999999999998775533
No 93
>KOG0130|consensus
Probab=99.42 E-value=5.3e-13 Score=97.99 Aligned_cols=85 Identities=33% Similarity=0.523 Sum_probs=80.4
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
-....|||.++..++++++|.+.|..||+|+++.+..|+.||-.+|||+|+|.+.++|+.|+..+|+..+.+..|.|.|+
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~ 149 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWC 149 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEE
Confidence 34678999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCCC
Q psy2618 173 TRKPP 177 (390)
Q Consensus 173 ~~~~~ 177 (390)
.-+.+
T Consensus 150 Fv~gp 154 (170)
T KOG0130|consen 150 FVKGP 154 (170)
T ss_pred EecCC
Confidence 76654
No 94
>KOG4207|consensus
Probab=99.41 E-value=3.5e-13 Score=106.45 Aligned_cols=79 Identities=28% Similarity=0.349 Sum_probs=73.6
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+...+|.|-||-.-++.++|+.+|++||.|-+|.|-.|.. ++|||||.|.+..+|+.|+++|+|.+|+|++|.|+.+
T Consensus 11 ~gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~a 90 (256)
T KOG4207|consen 11 EGMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMA 90 (256)
T ss_pred ccceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeeccceeeehhh
Confidence 4567899999999999999999999999999999988865 6799999999999999999999999999999999988
Q ss_pred CC
Q psy2618 82 SS 83 (390)
Q Consensus 82 ~~ 83 (390)
.-
T Consensus 91 ry 92 (256)
T KOG4207|consen 91 RY 92 (256)
T ss_pred hc
Confidence 64
No 95
>KOG0120|consensus
Probab=99.40 E-value=1.9e-12 Score=118.62 Aligned_cols=169 Identities=19% Similarity=0.405 Sum_probs=130.8
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.....++|++||...++.++.+++..||++....++.+.. ++||||.+|.+......|++.|||..+.++.|.|..+
T Consensus 287 ~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A 366 (500)
T KOG0120|consen 287 DSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRA 366 (500)
T ss_pred cccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehh
Confidence 3457899999999999999999999999999888887764 7899999999999999999999999999999999998
Q ss_pred CCCCCCCCCCC-------------------CCceEEEEcCCC--c-ccCH-------HHHHHHhCCCCCeeEEEEeeCC-
Q psy2618 82 SSPGNQPKQDT-------------------SNHYHIFVGDLS--P-EIET-------QTLKEAFAPFGEISNCRIVRDP- 131 (390)
Q Consensus 82 ~~~~~~~~~~~-------------------~~~~~l~v~nl~--~-~~~~-------~~l~~~f~~~G~i~~~~~~~~~- 131 (390)
........... .....|.+.|+= . -.++ |+++.-+.+||.|.+|.+.++-
T Consensus 367 ~~g~~~~~~~~~~~~~~~~~i~~~~~q~~g~~t~Vl~L~n~Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~ 446 (500)
T KOG0120|consen 367 IVGASNANVNFNISQSQVPGIPLLMTQMAGIPTEVLCLTNVVTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYP 446 (500)
T ss_pred hccchhccccCCccccccccchhhhcccCCCcchhhhhhhcCCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCC
Confidence 65322211111 112223333321 0 0122 3455667889999999887762
Q ss_pred --CCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 132 --QTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 132 --~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
......|..||+|.+.+++++|+++|+|..+.+|.+...|-.
T Consensus 447 ~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~nRtVvtsYyd 490 (500)
T KOG0120|consen 447 DENPVPGTGKVFVEFADTEDSQRAMEELTGRKFANRTVVASYYD 490 (500)
T ss_pred CCCcCCCcccEEEEecChHHHHHHHHHccCceeCCcEEEEEecC
Confidence 223356889999999999999999999999999999988764
No 96
>KOG0111|consensus
Probab=99.37 E-value=5.4e-13 Score=106.34 Aligned_cols=81 Identities=28% Similarity=0.614 Sum_probs=74.6
Q ss_pred CcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecc
Q psy2618 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278 (390)
Q Consensus 205 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 278 (390)
..++|||++|..++++..|...|-+||.|++|.++-+ |||+||+|.-.|+|..|+..||+.++.||.|+|++++
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~Ak 88 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAK 88 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecC
Confidence 3467999999999999999999999999999999855 8999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy2618 279 ESENNST 285 (390)
Q Consensus 279 ~~~~~~~ 285 (390)
+.+....
T Consensus 89 P~kikeg 95 (298)
T KOG0111|consen 89 PEKIKEG 95 (298)
T ss_pred CccccCC
Confidence 8765443
No 97
>KOG0132|consensus
Probab=99.37 E-value=4e-11 Score=112.52 Aligned_cols=77 Identities=26% Similarity=0.601 Sum_probs=72.5
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
++||||++|+..+++.+|.++|+.||+|.+|.++. ++++|||...+..+|.+|+.+|++..+.++.|+|.|+..
T Consensus 421 SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~------~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g 494 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIP------PRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVG 494 (894)
T ss_pred eeeeeeccccchhhHHHHHHHHHhcccceeEeecc------CCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeecc
Confidence 78999999999999999999999999999998875 589999999999999999999999999999999999987
Q ss_pred CCC
Q psy2618 175 KPP 177 (390)
Q Consensus 175 ~~~ 177 (390)
+..
T Consensus 495 ~G~ 497 (894)
T KOG0132|consen 495 KGP 497 (894)
T ss_pred CCc
Confidence 644
No 98
>PLN03213 repressor of silencing 3; Provisional
Probab=99.37 E-value=2.3e-12 Score=114.72 Aligned_cols=80 Identities=18% Similarity=0.363 Sum_probs=72.4
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCH--HHHHHHHHHhcCceeCCeeEE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK--AEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~--~~a~~a~~~l~~~~~~g~~i~ 168 (390)
......+||||||++.+++++|+.+|..||.|.++.|++ .+| ||||||+|.+. .++.+|+..|+|..+.|+.|+
T Consensus 6 s~~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpR--ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LK 81 (759)
T PLN03213 6 SGGGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVR--TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLR 81 (759)
T ss_pred cCCcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEec--ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeE
Confidence 344568899999999999999999999999999999994 466 99999999987 789999999999999999999
Q ss_pred EeecCC
Q psy2618 169 TNWSTR 174 (390)
Q Consensus 169 v~~~~~ 174 (390)
|..+.+
T Consensus 82 VNKAKP 87 (759)
T PLN03213 82 LEKAKE 87 (759)
T ss_pred EeeccH
Confidence 998864
No 99
>smart00362 RRM_2 RNA recognition motif.
Probab=99.37 E-value=4.3e-12 Score=87.78 Aligned_cols=72 Identities=46% Similarity=0.816 Sum_probs=66.8
Q ss_pred EEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 97 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
+|+|+|||..+++++|+++|..||.|..+.+..+. +.++++|||+|.+.++|..|++.+++..+.|+.|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~--~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT--GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC--CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 48999999999999999999999999999998876 6789999999999999999999999999999998763
No 100
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=6e-12 Score=82.26 Aligned_cols=55 Identities=40% Similarity=0.771 Sum_probs=51.8
Q ss_pred HHhhhcCCCceeEEEEecCC-CeEEEEecCHHHHHHHHHHhcCceecCeEEEEEec
Q psy2618 223 VSKVFSPFGTIVDIRVFKEK-GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG 277 (390)
Q Consensus 223 l~~~f~~~g~v~~~~~~~~~-g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 277 (390)
|+++|++||.|.++.+.+++ +++||+|.+.++|.+|++.||+..++|+.|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 67899999999999999987 99999999999999999999999999999999986
No 101
>KOG0129|consensus
Probab=99.36 E-value=2.5e-11 Score=109.33 Aligned_cols=168 Identities=20% Similarity=0.291 Sum_probs=115.9
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCC--CCCc---EEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL--KSKG---YAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g--~~~g---~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
.....-+++|||++||++++|+.|...|..||.+.--+-.+....+ .++| |+|+.|.++.++..-+.++.- .
T Consensus 253 ~~~~~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~ 329 (520)
T KOG0129|consen 253 YRSPRYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---G 329 (520)
T ss_pred CCccccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---c
Confidence 3345568899999999999999999999999985332221111111 2567 999999999999888776543 3
Q ss_pred CeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhc-CCCceeEEEEecC-
Q psy2618 164 SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFS-PFGTIVDIRVFKE- 241 (390)
Q Consensus 164 g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~-~~g~v~~~~~~~~- 241 (390)
...+.+..+.+......- ..+. .......+....+....+.++||||+||.-++.++|..+|+ -||.|..+-|..|
T Consensus 330 ~~~~yf~vss~~~k~k~V-QIrP-W~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~ 407 (520)
T KOG0129|consen 330 EGNYYFKVSSPTIKDKEV-QIRP-WVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDP 407 (520)
T ss_pred ccceEEEEecCcccccce-eEEe-eEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCc
Confidence 444444333332221100 0000 00011111111344556778999999999999999999999 6999999988877
Q ss_pred -----CCeEEEEecCHHHHHHHHHH
Q psy2618 242 -----KGYAFVKFTTKETATHAIES 261 (390)
Q Consensus 242 -----~g~~fv~f~~~~~a~~a~~~ 261 (390)
+|-|-|+|.+..+-.+||.+
T Consensus 408 k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 408 KLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCCCCCcceeeecccHHHHHHHhh
Confidence 79999999999999999885
No 102
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.36 E-value=3.3e-12 Score=83.52 Aligned_cols=56 Identities=36% Similarity=0.584 Sum_probs=50.9
Q ss_pred HHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 24 LCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 24 l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
|+++|++||+|.++++..++ +++|||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 68999999999999987655 579999999999999999999999999999999985
No 103
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.36 E-value=4e-12 Score=104.93 Aligned_cols=76 Identities=21% Similarity=0.321 Sum_probs=69.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
..+|+|+||++.+|+++|+++|+.||.|.+|.++++. +.++||||+|.++++++.|+ .|+|..|.++.|.|.....
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~---et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~~ 80 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG---EYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWGQ 80 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC---CcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCcc
Confidence 4789999999999999999999999999999999984 45689999999999999999 7899999999999987654
No 104
>KOG0108|consensus
Probab=99.36 E-value=3e-12 Score=116.77 Aligned_cols=82 Identities=30% Similarity=0.537 Sum_probs=79.1
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
+.|||+|||+++++++|.++|+..|.|.+++++.|+.||+.+||+|++|.+.+++..|++.|++..+.||+|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999998765
Q ss_pred CC
Q psy2618 176 PP 177 (390)
Q Consensus 176 ~~ 177 (390)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 44
No 105
>KOG4660|consensus
Probab=99.35 E-value=1.2e-11 Score=112.20 Aligned_cols=159 Identities=22% Similarity=0.219 Sum_probs=107.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
.+.+.++|+|-|||.++++++|+++|+.||+|.+|+.... .++.+||+|-|..+|+.|+++|++.++.|+.|+.....
T Consensus 71 ~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~--~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~~~~ 148 (549)
T KOG4660|consen 71 KDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPN--KRGIVFVEFYDVRDAERALKALNRREIAGKRIKRPGGA 148 (549)
T ss_pred ccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccc--cCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCCCcc
Confidence 3567899999999999999999999999999999766543 56899999999999999999999999999999832222
Q ss_pred CCCC-----------------CCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEec
Q psy2618 83 SPGN-----------------QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145 (390)
Q Consensus 83 ~~~~-----------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~ 145 (390)
.... ...........++ +.|++..+..-++..+.-+|.+.. .. ++.-..--|++|.
T Consensus 149 ~~~~~~~~~~~~~~~~~~p~a~s~pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~-----~~~~~hq~~~~~~ 221 (549)
T KOG4660|consen 149 RRAMGLQSGTSFLNHFGSPLANSPPGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RE-----TPLLNHQRFVEFA 221 (549)
T ss_pred cccchhcccchhhhhccchhhcCCCCCCcCCcce-eeeccchhhhhhhcchhccCcccc-cc-----ccchhhhhhhhhc
Confidence 1110 0011111122333 338888888777777777776544 21 2222224677777
Q ss_pred CHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 146 KKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 146 ~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
+..++..+.... |..+.+....+.+
T Consensus 222 ~~~s~a~~~~~~-G~~~s~~~~v~t~ 246 (549)
T KOG4660|consen 222 DNRSYAFSEPRG-GFLISNSSGVITF 246 (549)
T ss_pred cccchhhcccCC-ceecCCCCceEEe
Confidence 777775554422 4455444433333
No 106
>smart00360 RRM RNA recognition motif.
Probab=99.35 E-value=5.1e-12 Score=87.06 Aligned_cols=71 Identities=44% Similarity=0.796 Sum_probs=66.5
Q ss_pred EcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 100 VGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 100 v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
|+|||..+++++|+++|+.||.|..+.+..++.++.++|+|||+|.+.++|..|++.+++..+.|+.|.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57999999999999999999999999999988788899999999999999999999999999999998763
No 107
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.35 E-value=6.8e-12 Score=87.24 Aligned_cols=72 Identities=38% Similarity=0.618 Sum_probs=66.1
Q ss_pred eEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
+|+|+|||..+++++|+++|+.+|.|..+.+..+.. .+++|||+|.+.++|..|++.+++..+.|+++.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 589999999999999999999999999999987653 468999999999999999999999999999998864
No 108
>KOG4307|consensus
Probab=99.32 E-value=6.2e-12 Score=116.27 Aligned_cols=180 Identities=13% Similarity=0.030 Sum_probs=122.3
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
.+.+.+.+.+++.++.+++++|... .|.+..+..+...+...|.++|.|....++.+|+.. +...+-.|.+.+.-...
T Consensus 311 ~~y~~~~gm~fn~~~nd~rkfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~g~ 388 (944)
T KOG4307|consen 311 KYYNNYKGMEFNNDFNDGRKFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPPGN 388 (944)
T ss_pred hheeeecccccccccchhhhhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCCCc
Confidence 4567788999999999999999743 256666666666655689999999999999999864 55555667666654332
Q ss_pred CCCCCcccccc-------cCCCCcc----ccc---cccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeE-EEEe
Q psy2618 175 KPPAMTNERKR-------QNSHTKT----ITF---DEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVD-IRVF 239 (390)
Q Consensus 175 ~~~~~~~~~~~-------~~~~~~~----~~~---~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~ 239 (390)
........... ....... ... ............+|||..||..+++.++.++|...-.|++ |.+-
T Consensus 389 ~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt 468 (944)
T KOG4307|consen 389 LGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELT 468 (944)
T ss_pred cccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeEec
Confidence 21111100000 0000000 000 0011123345678999999999999999999998887777 4444
Q ss_pred cC-----CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEe
Q psy2618 240 KE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFW 276 (390)
Q Consensus 240 ~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 276 (390)
+. ++.|||.|.+++++.+|...-+...++.+.|+|.-
T Consensus 469 ~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~s 510 (944)
T KOG4307|consen 469 RLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDS 510 (944)
T ss_pred cCCcccccchhhheeccccccchhhhcccccccCceEEEeec
Confidence 32 68999999999998888887777777788888854
No 109
>KOG0130|consensus
Probab=99.32 E-value=2.9e-12 Score=94.13 Aligned_cols=76 Identities=22% Similarity=0.376 Sum_probs=71.3
Q ss_pred eEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
.|||+++...+++++|.+.|..||+|.++.+.-|.+ .+|||+|+|++.++|..|++.+|+..+.+.+|.|.|+-..
T Consensus 74 Ii~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 74 IIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred EEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 589999999999999999999999999999988876 5799999999999999999999999999999999999543
No 110
>smart00360 RRM RNA recognition motif.
Probab=99.32 E-value=6.6e-12 Score=86.50 Aligned_cols=68 Identities=37% Similarity=0.579 Sum_probs=61.7
Q ss_pred EeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 12 VGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 12 v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
|+|||..+++++|+++|+.||.|..+++..++. ++++|||+|.+.++|.+|++.+++..+.|+.+.|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 689999999999999999999999999887643 56899999999999999999999999999988763
No 111
>KOG0128|consensus
Probab=99.31 E-value=2.6e-13 Score=128.42 Aligned_cols=230 Identities=20% Similarity=0.255 Sum_probs=183.3
Q ss_pred CCeEEEeCCChhccHH-HHHHHhcccCCceEEEEeecC--CC-CCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 7 PTTLYVGNLDVSVTEE-LLCALFSQIGPVKGCKVIREP--GN-DPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~-~l~~~f~~~G~v~~v~~~~~~--~~-~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
.+...+.|+.+...+. .++..|..+|.|..|++-..+ .+ ..+.++.+.....++.|... .+.-+.++.+.+..+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~p-a~~~~a~~~~av~~ad 649 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEIQRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATVP-AGGALANRSAAVGLAD 649 (881)
T ss_pred hhhhcccCCCcchhhHHhhHHHhhcccccccccCccccccccccchhhhhhccccchhhcccc-cccccCCccccCCCCC
Confidence 3455677776554444 678999999999988876522 12 23899999999999999864 6767778877777776
Q ss_pred CCCCCCCCCC-----CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHh
Q psy2618 83 SPGNQPKQDT-----SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 83 ~~~~~~~~~~-----~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 157 (390)
.......... ....++||+||+..+.+++|...|..+|.+..+.+......++.+|.||+.|..++++..|+...
T Consensus 650 ~~~~~~~~kvs~n~~R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~ 729 (881)
T KOG0128|consen 650 AEEKEENFKVSPNEIRDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFR 729 (881)
T ss_pred chhhhhccCcCchHHHHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhh
Confidence 6543322222 23568999999999999999999999999888887767778899999999999999999999765
Q ss_pred cCceeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEE
Q psy2618 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237 (390)
Q Consensus 158 ~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~ 237 (390)
+++.++ + ..|+|.|.|...|.++|+.+++.+|.+.+++
T Consensus 730 d~~~~g-K-----------------------------------------~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~ 767 (881)
T KOG0128|consen 730 DSCFFG-K-----------------------------------------ISVAISGPPFQGTKEELKSLASKTGNVTSLR 767 (881)
T ss_pred hhhhhh-h-----------------------------------------hhhheeCCCCCCchHHHHhhccccCCccccc
Confidence 544432 1 1399999999999999999999999999998
Q ss_pred EecC-----CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 238 VFKE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 238 ~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
++.. +|.++|.|.++.++.+++...+...+.-+.+.|..+.+
T Consensus 768 ~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 768 LVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRENNGEVQVSNP 814 (881)
T ss_pred hhhhhccccccceeccCCCcchhhhhcccchhhhhhhcCccccccCC
Confidence 7743 78999999999999999998888877777777776555
No 112
>KOG0129|consensus
Probab=99.30 E-value=6.2e-11 Score=106.77 Aligned_cols=149 Identities=25% Similarity=0.292 Sum_probs=114.2
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-----CCC---eEEEEEccHHHHHHHHHHhcCeeecccee
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-----NDP---YAFLEFVHHTVAATALAAMNKRVFLEKEM 76 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-----~~g---~afV~F~~~~~A~~a~~~l~~~~~~g~~l 76 (390)
+-++.|||++||++++|+.|...|..||.+.-=+-.+.+. .+| |+|+-|+++..+...+.++.- ...++
T Consensus 257 ~~S~KVFvGGlp~dise~~i~~~F~~FGs~~VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~---~~~~~ 333 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQINASFGQFGSVKVDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSE---GEGNY 333 (520)
T ss_pred ccccceeecCCCccccHHHHHhhcccccceEeecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhh---cccce
Confidence 3478999999999999999999999999865222211111 455 999999999999988876543 22233
Q ss_pred eEeecCCCC------------------CCCCCCCCCceEEEEcCCCcccCHHHHHHHhC-CCCCeeEEEEeeCCCCCCCC
Q psy2618 77 KVNWASSPG------------------NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA-PFGEISNCRIVRDPQTLKSK 137 (390)
Q Consensus 77 ~v~~~~~~~------------------~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~-~~G~i~~~~~~~~~~~g~~~ 137 (390)
.+..+.... ......-+..+|||||+||.-++.++|..+|+ .||.|.-+-|-.|++-+-++
T Consensus 334 yf~vss~~~k~k~VQIrPW~laDs~fv~d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPk 413 (520)
T KOG0129|consen 334 YFKVSSPTIKDKEVQIRPWVLADSDFVLDHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPK 413 (520)
T ss_pred EEEEecCcccccceeEEeeEeccchhhhccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCC
Confidence 332222111 11223446689999999999999999999999 79999998888888888899
Q ss_pred cEEEEEecCHHHHHHHHHH
Q psy2618 138 GYAFVSFVKKAEAENAITA 156 (390)
Q Consensus 138 g~afv~f~~~~~a~~a~~~ 156 (390)
|-|=|+|.+..+-.+||..
T Consensus 414 GaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 414 GAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred CcceeeecccHHHHHHHhh
Confidence 9999999999999999864
No 113
>KOG0111|consensus
Probab=99.30 E-value=2.5e-12 Score=102.56 Aligned_cols=83 Identities=34% Similarity=0.582 Sum_probs=79.3
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
...++|||++|-.++++.-|...|-.||.|.+|.+..|-.++++|||+||+|...|+|..|+..++..++.||.|+|.++
T Consensus 8 ~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~A 87 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLA 87 (298)
T ss_pred ccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeec
Confidence 34689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC
Q psy2618 173 TRK 175 (390)
Q Consensus 173 ~~~ 175 (390)
.+.
T Consensus 88 kP~ 90 (298)
T KOG0111|consen 88 KPE 90 (298)
T ss_pred CCc
Confidence 765
No 114
>KOG0113|consensus
Probab=99.29 E-value=1.4e-11 Score=103.04 Aligned_cols=80 Identities=23% Similarity=0.365 Sum_probs=74.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
..+=+||||..|+.+++|.+|++.|+.||+|..|.++.++- ++|||||+|+++.+...|.+..+|..|.|+.|.|.+
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDv 177 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDV 177 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEe
Confidence 46789999999999999999999999999999999999853 789999999999999999999999999999999997
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
-.-
T Consensus 178 ERg 180 (335)
T KOG0113|consen 178 ERG 180 (335)
T ss_pred ccc
Confidence 654
No 115
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.28 E-value=3.9e-11 Score=83.38 Aligned_cols=74 Identities=46% Similarity=0.885 Sum_probs=68.5
Q ss_pred EEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 97 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
+|+|+|||..+++++|+++|+.+|.|..+.+..+..+ .++++|||+|.+.++|..|++.+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~-~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT-KSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC-CcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 4899999999999999999999999999999987655 6789999999999999999999999999999998864
No 116
>KOG4454|consensus
Probab=99.27 E-value=1.1e-12 Score=104.64 Aligned_cols=144 Identities=25% Similarity=0.348 Sum_probs=120.9
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCC-CeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND-PYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
-+..+||+|.|+...++|+-|.++|-..|+|..|.|-.++..+ .||||.|+++..+..|++.+||..+.+.++.+.
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~--- 82 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEEDEEQRT--- 82 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhccchhhcc---
Confidence 4567999999999999999999999999999999887776533 499999999999999999999999999988887
Q ss_pred CCCCCCCCCCCCceEEEEcC----CCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc
Q psy2618 83 SPGNQPKQDTSNHYHIFVGD----LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158 (390)
Q Consensus 83 ~~~~~~~~~~~~~~~l~v~n----l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 158 (390)
++.|+ |...++++-+.+.|+.-|.+..+++..+.. |+++.++|+++......-.++....
T Consensus 83 ---------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d-~rnrn~~~~~~qr~~~~P~~~~~y~ 146 (267)
T KOG4454|consen 83 ---------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND-GRNRNFGFVTYQRLCAVPFALDLYQ 146 (267)
T ss_pred ---------------cccCCCcchhhhhcchhhheeeecccCCCCCcccccccc-CCccCccchhhhhhhcCcHHhhhhc
Confidence 34444 566788899999999999999999888855 6899999999988888778877666
Q ss_pred CceeCCee
Q psy2618 159 GQWLGSRS 166 (390)
Q Consensus 159 ~~~~~g~~ 166 (390)
+..+.-++
T Consensus 147 ~l~~~~~~ 154 (267)
T KOG4454|consen 147 GLELFQKK 154 (267)
T ss_pred ccCcCCCC
Confidence 55443333
No 117
>smart00361 RRM_1 RNA recognition motif.
Probab=99.23 E-value=5.3e-11 Score=81.54 Aligned_cols=61 Identities=23% Similarity=0.555 Sum_probs=55.0
Q ss_pred HHHHHHHhC----CCCCeeEEE-EeeCCCC--CCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 109 TQTLKEAFA----PFGEISNCR-IVRDPQT--LKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 109 ~~~l~~~f~----~~G~i~~~~-~~~~~~~--g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
+++|+++|+ .||.|.++. ++.++.+ +.++||+||+|.+.++|.+|++.|++..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999995 6666666 889999999999999999999999999999999876
No 118
>KOG0126|consensus
Probab=99.22 E-value=1.2e-12 Score=101.40 Aligned_cols=84 Identities=23% Similarity=0.394 Sum_probs=77.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..++.=|||+|||.+.||.||.-.|++||.|++|.+++|+. ++||||+.|++..+...|+..|||..+.|+.|+|.
T Consensus 31 ~YkdsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVD 110 (219)
T KOG0126|consen 31 EYKDSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVD 110 (219)
T ss_pred hcccceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEEee
Confidence 456788899999999999999999999999999999999975 78999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 80 WASSPGN 86 (390)
Q Consensus 80 ~~~~~~~ 86 (390)
.......
T Consensus 111 Hv~~Yk~ 117 (219)
T KOG0126|consen 111 HVSNYKK 117 (219)
T ss_pred ecccccC
Confidence 8765443
No 119
>KOG0108|consensus
Probab=99.21 E-value=2.4e-11 Score=110.88 Aligned_cols=79 Identities=29% Similarity=0.547 Sum_probs=74.3
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
+.|||+|||++.++++|.++|+..|+|.+++++.|+. .+||||++|.+.++|..|++.||+..+.|++|+|.|+...
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~ 98 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNR 98 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeeccccc
Confidence 8999999999999999999999999999999998875 5789999999999999999999999999999999999764
Q ss_pred CC
Q psy2618 85 GN 86 (390)
Q Consensus 85 ~~ 86 (390)
..
T Consensus 99 ~~ 100 (435)
T KOG0108|consen 99 KN 100 (435)
T ss_pred ch
Confidence 43
No 120
>KOG0226|consensus
Probab=99.16 E-value=1.8e-11 Score=100.10 Aligned_cols=167 Identities=29% Similarity=0.428 Sum_probs=127.7
Q ss_pred eEEEeCCChhccHHH---HHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 9 TLYVGNLDVSVTEEL---LCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~---l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.+++.|+-..+..+- +...|+.+-.....+++++.. -++++|+.|+....-.++-..-+++.+....+++.....
T Consensus 98 ~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gts 177 (290)
T KOG0226|consen 98 RPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTS 177 (290)
T ss_pred cccccccccccCCCCCCcchhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccc
Confidence 344555544444443 256777776666666665543 457999999988887777766566665555566655544
Q ss_pred CCCCC-CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee
Q psy2618 84 PGNQP-KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162 (390)
Q Consensus 84 ~~~~~-~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 162 (390)
-.+.. .+-.....+||.+.|..+++++-|...|.+|-.....++++|..||+++||+||.|.++.++..|+.+++++.+
T Consensus 178 wedPsl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyV 257 (290)
T KOG0226|consen 178 WEDPSLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYV 257 (290)
T ss_pred cCCcccccCccccceeecccccccccHHHHHHHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhccccc
Confidence 33322 23355678999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred CCeeEEEeecCCC
Q psy2618 163 GSRSIRTNWSTRK 175 (390)
Q Consensus 163 ~g~~i~v~~~~~~ 175 (390)
+.+.|.+..+..+
T Consensus 258 gsrpiklRkS~wk 270 (290)
T KOG0226|consen 258 GSRPIKLRKSEWK 270 (290)
T ss_pred ccchhHhhhhhHH
Confidence 9999988766544
No 121
>KOG0415|consensus
Probab=99.13 E-value=9.9e-11 Score=100.17 Aligned_cols=84 Identities=30% Similarity=0.518 Sum_probs=79.6
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
..+.+.|||..|.+-+++++|.-+|+.||.|.+|.|++|..||.+..||||+|.+.++++.|.-++++..|+.+.|.|.+
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDF 315 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDF 315 (479)
T ss_pred CCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEeeh
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC
Q psy2618 172 STRK 175 (390)
Q Consensus 172 ~~~~ 175 (390)
+..-
T Consensus 316 SQSV 319 (479)
T KOG0415|consen 316 SQSV 319 (479)
T ss_pred hhhh
Confidence 7643
No 122
>smart00361 RRM_1 RNA recognition motif.
Probab=99.11 E-value=2.7e-10 Score=78.02 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=50.4
Q ss_pred HHHHHHHhc----ccCCceEEE-EeecC-----CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 21 EELLCALFS----QIGPVKGCK-VIREP-----GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 21 ~~~l~~~f~----~~G~v~~v~-~~~~~-----~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
+++|+++|+ .||.|.+|. +..++ .++|+|||+|.+.++|.+|++.|||..+.|+.|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 578888888 999999985 54443 36899999999999999999999999999999876
No 123
>KOG4210|consensus
Probab=99.05 E-value=2.8e-10 Score=99.38 Aligned_cols=171 Identities=22% Similarity=0.330 Sum_probs=137.8
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
..++++++++.+++.+.++..++..+|.+....+.... .+++++++.|...+++..|+.......+.++.+......
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~~ 166 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLNT 166 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCcccc
Confidence 57899999999999999999999999987777666533 278899999999999999998533345556655555554
Q ss_pred CCCCCC-----CCCCCCceEEE-EcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHH
Q psy2618 83 SPGNQP-----KQDTSNHYHIF-VGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156 (390)
Q Consensus 83 ~~~~~~-----~~~~~~~~~l~-v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 156 (390)
...... ........+++ |++|+..+++++|+..|..+|.|..+++..++.++.++||++|.|.+......++..
T Consensus 167 ~~~~~~~n~~~~~~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~ 246 (285)
T KOG4210|consen 167 RRGLRPKNKLSRLSSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND 246 (285)
T ss_pred cccccccchhcccccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc
Confidence 433211 12223344444 999999999999999999999999999999999999999999999999999999987
Q ss_pred hcCceeCCeeEEEeecCCCCC
Q psy2618 157 MNGQWLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 157 l~~~~~~g~~i~v~~~~~~~~ 177 (390)
....+.++.+.+.+..+...
T Consensus 247 -~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 247 -QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred -ccCcccCcccccccCCCCcc
Confidence 78889999999988776543
No 124
>KOG0112|consensus
Probab=99.01 E-value=6.5e-10 Score=106.31 Aligned_cols=163 Identities=19% Similarity=0.343 Sum_probs=138.6
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
...++||++||+..+++.+|+..|..+|.|.+|.+.... -+.-..|+||.|.+...+-.|...+.+..|....+++.+.
T Consensus 370 ~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~-~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~glG 448 (975)
T KOG0112|consen 370 RATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPH-IKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGLG 448 (975)
T ss_pred hhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCC-CCcccchhhhhhhccccCcccchhhcCCccccCccccccc
Confidence 347899999999999999999999999999999886542 2345678999999999999999888888887666655544
Q ss_pred CCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCH
Q psy2618 173 TRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTK 252 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~ 252 (390)
..+ ....+.+|+++|...+....|...|..||.|..|.+-....|++|.|.+.
T Consensus 449 ~~k---------------------------st~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hgq~yayi~yes~ 501 (975)
T KOG0112|consen 449 QPK---------------------------STPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHGQPYAYIQYESP 501 (975)
T ss_pred ccc---------------------------cccceeeccCCCCCCChHHHHHHHhhccCcceeeecccCCcceeeecccC
Confidence 321 12335699999999999999999999999999999988889999999999
Q ss_pred HHHHHHHHHhcCceecC--eEEEEEecccCCCC
Q psy2618 253 ETATHAIESIHNTDING--HTVKCFWGKESENN 283 (390)
Q Consensus 253 ~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~~~ 283 (390)
..++.|+..+.+..++| +.+.|.|+......
T Consensus 502 ~~aq~a~~~~rgap~G~P~~r~rvdla~~~~~~ 534 (975)
T KOG0112|consen 502 PAAQAATHDMRGAPLGGPPRRLRVDLASPPGAT 534 (975)
T ss_pred ccchhhHHHHhcCcCCCCCcccccccccCCCCC
Confidence 99999999999999976 78999998876543
No 125
>KOG0153|consensus
Probab=99.00 E-value=1.1e-09 Score=93.93 Aligned_cols=78 Identities=26% Similarity=0.457 Sum_probs=69.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh-cCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM-NKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l-~~~~~~g~~l~v~~~ 81 (390)
++...++|||++|-..+++.+|+++|.+||+|.++.+... +++|||+|.+.+.|+.|.+++ +...+.|.+|+|.|.
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~---~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg 300 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPR---KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWG 300 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecc---cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeC
Confidence 4566789999999889999999999999999999998765 449999999999999999874 566689999999999
Q ss_pred CC
Q psy2618 82 SS 83 (390)
Q Consensus 82 ~~ 83 (390)
.+
T Consensus 301 ~~ 302 (377)
T KOG0153|consen 301 RP 302 (377)
T ss_pred CC
Confidence 87
No 126
>KOG0153|consensus
Probab=98.97 E-value=2.3e-09 Score=91.99 Aligned_cols=78 Identities=37% Similarity=0.621 Sum_probs=70.6
Q ss_pred CCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcC-ceecCeEEEEEeccc
Q psy2618 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHN-TDINGHTVKCFWGKE 279 (390)
Q Consensus 202 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~~~ 279 (390)
.+....+|||++|...+++.+|+++|.+||+|..+++...+++|||+|.+.+.|.+|...+-. ..++|.+|.|.|.++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRKGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeecccccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 344567899999999999999999999999999999999999999999999999999887644 457999999999988
No 127
>KOG0415|consensus
Probab=98.97 E-value=9.9e-10 Score=94.15 Aligned_cols=81 Identities=27% Similarity=0.485 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCC---CCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~---~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
.-+|...|||.-|.+-++++||.-+|+.||+|.+|.++++... -.||||+|++.++++.|.-+|++..+..+.|.|.
T Consensus 235 ~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVD 314 (479)
T KOG0415|consen 235 VKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVD 314 (479)
T ss_pred cCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceEEee
Confidence 4578899999999999999999999999999999999999863 3599999999999999999999999999999999
Q ss_pred ecCC
Q psy2618 80 WASS 83 (390)
Q Consensus 80 ~~~~ 83 (390)
++.+
T Consensus 315 FSQS 318 (479)
T KOG0415|consen 315 FSQS 318 (479)
T ss_pred hhhh
Confidence 9875
No 128
>KOG0128|consensus
Probab=98.97 E-value=3.9e-11 Score=113.93 Aligned_cols=147 Identities=20% Similarity=0.264 Sum_probs=122.7
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEe---ecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVI---REPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~---~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+...++||+||+..+.+.+|...|..+|.+..+++. ..++-+|+|||+|...+++.+|+.-.++ .+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~-~~~g-------- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDS-CFFG-------- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhh-hhhh--------
Confidence 445688999999999999999999999987666554 2234679999999999999999985444 3344
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCce
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW 161 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 161 (390)
...|+|+|.|+..|.++++.++..+|.+.++.++.. ..|+++|.|+|.|.+..++.+++...+...
T Consensus 736 -------------K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~-r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~ 801 (881)
T KOG0128|consen 736 -------------KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTV-RAGKPKGKARVDYNTEADASRKVASVDVAG 801 (881)
T ss_pred -------------hhhhheeCCCCCCchHHHHhhccccCCccccchhhh-hccccccceeccCCCcchhhhhcccchhhh
Confidence 256899999999999999999999999999987666 567899999999999999999998878777
Q ss_pred eCCeeEEEeecCC
Q psy2618 162 LGSRSIRTNWSTR 174 (390)
Q Consensus 162 ~~g~~i~v~~~~~ 174 (390)
+..+.+.|..+.+
T Consensus 802 ~rE~~~~v~vsnp 814 (881)
T KOG0128|consen 802 KRENNGEVQVSNP 814 (881)
T ss_pred hhhcCccccccCC
Confidence 7777777776554
No 129
>KOG4660|consensus
Probab=98.96 E-value=8.1e-10 Score=100.59 Aligned_cols=183 Identities=17% Similarity=0.227 Sum_probs=118.6
Q ss_pred CCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCe
Q psy2618 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSR 165 (390)
Q Consensus 86 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 165 (390)
+.+.+...+.++|+|-|||..+++++|+++|+.||+|+.++..+ ..+|.+||+|.|..+|+.|+++|++..+.|+
T Consensus 66 ~np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~-----~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~ 140 (549)
T KOG4660|consen 66 DNPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETP-----NKRGIVFVEFYDVRDAERALKALNRREIAGK 140 (549)
T ss_pred CCCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhccc-----ccCceEEEEEeehHhHHHHHHHHHHHHhhhh
Confidence 44455567789999999999999999999999999999965433 3689999999999999999999999999999
Q ss_pred eEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-CCe
Q psy2618 166 SIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-KGY 244 (390)
Q Consensus 166 ~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~ 244 (390)
.|.................-. ........... ........+| +.|++..+...++..+.-+|.+.. +.... +..
T Consensus 141 ~~k~~~~~~~~~~~~~~~~~~-~~~~~p~a~s~--pgg~~~~~~~-g~l~P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq 215 (549)
T KOG4660|consen 141 RIKRPGGARRAMGLQSGTSFL-NHFGSPLANSP--PGGWPRGQLF-GMLSPTRSSILLEHISSVDGSSPG-RETPLLNHQ 215 (549)
T ss_pred hhcCCCcccccchhcccchhh-hhccchhhcCC--CCCCcCCcce-eeeccchhhhhhhcchhccCcccc-ccccchhhh
Confidence 988221111111100000000 00000000000 0011122233 338888888777778888887765 33222 336
Q ss_pred EEEEecCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 245 ~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
-|++|.+..++..+.... |..+.++.....++.+
T Consensus 216 ~~~~~~~~~s~a~~~~~~-G~~~s~~~~v~t~S~~ 249 (549)
T KOG4660|consen 216 RFVEFADNRSYAFSEPRG-GFLISNSSGVITFSGP 249 (549)
T ss_pred hhhhhccccchhhcccCC-ceecCCCCceEEecCC
Confidence 688888888886666544 6666777666666665
No 130
>KOG4208|consensus
Probab=98.95 E-value=3.7e-09 Score=84.35 Aligned_cols=87 Identities=24% Similarity=0.346 Sum_probs=78.3
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCC-CCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPF-GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~-G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
.........+++..+|.-..+.++..+|.++ |.|..+++-|++.||.++|||||+|.+.+.|.-|.+.||+..+.++.|
T Consensus 43 ~p~~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL 122 (214)
T KOG4208|consen 43 KPEQEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLL 122 (214)
T ss_pred CCccCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhhee
Confidence 3445556789999999999999999999998 668888888999999999999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy2618 168 RTNWSTRK 175 (390)
Q Consensus 168 ~v~~~~~~ 175 (390)
.+++-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 99987654
No 131
>KOG4454|consensus
Probab=98.95 E-value=2e-10 Score=91.89 Aligned_cols=136 Identities=20% Similarity=0.366 Sum_probs=109.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||.|+...++++-|.++|-.-|+|..+.|..++.. +.+ ||||.|.++-++.-|++.++|..+.++.+.+.
T Consensus 5 aae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~-~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~ 82 (267)
T KOG4454|consen 5 AAEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ-EQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRT 82 (267)
T ss_pred CcchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC-CCc-eeeeecccccchhhhhhhcccchhccchhhcc
Confidence 4456789999999999999999999999999999988766544 455 99999999999999999999999999888877
Q ss_pred ecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcC----CCCCCcHHHHHhhhcCCCceeEEEEecC-----
Q psy2618 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGG----FGKDLNEELVSKVFSPFGTIVDIRVFKE----- 241 (390)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~----l~~~~~~~~l~~~f~~~g~v~~~~~~~~----- 241 (390)
++.|+ |...++++.+...|+.-|.+..+++.++
T Consensus 83 --------------------------------------~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rn 124 (267)
T KOG4454|consen 83 --------------------------------------LRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRN 124 (267)
T ss_pred --------------------------------------cccCCCcchhhhhcchhhheeeecccCCCCCccccccccCCc
Confidence 34444 5667889999999999999998888754
Q ss_pred CCeEEEEecCHHHHHHHHHHhcCce
Q psy2618 242 KGYAFVKFTTKETATHAIESIHNTD 266 (390)
Q Consensus 242 ~g~~fv~f~~~~~a~~a~~~l~~~~ 266 (390)
+.++|+.+.-.-..-.++....+..
T Consensus 125 rn~~~~~~qr~~~~P~~~~~y~~l~ 149 (267)
T KOG4454|consen 125 RNFGFVTYQRLCAVPFALDLYQGLE 149 (267)
T ss_pred cCccchhhhhhhcCcHHhhhhcccC
Confidence 5677777765555555555544443
No 132
>KOG4661|consensus
Probab=98.95 E-value=2e-09 Score=97.82 Aligned_cols=79 Identities=22% Similarity=0.341 Sum_probs=72.6
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCC---eEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g---~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
-.+.|||++|...+.-.||+.+|++||+|+-.+++++.++-| |+||++.+.++|.+||+.|+.+.|.|+-|.|..++
T Consensus 404 ~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaK 483 (940)
T KOG4661|consen 404 LGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAK 483 (940)
T ss_pred cccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeecc
Confidence 357899999999999999999999999999999998876544 99999999999999999999999999999999997
Q ss_pred CC
Q psy2618 83 SP 84 (390)
Q Consensus 83 ~~ 84 (390)
..
T Consensus 484 NE 485 (940)
T KOG4661|consen 484 NE 485 (940)
T ss_pred cC
Confidence 64
No 133
>KOG0112|consensus
Probab=98.93 E-value=6.9e-10 Score=106.14 Aligned_cols=159 Identities=21% Similarity=0.358 Sum_probs=133.7
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
+....++||++||+..+++.+|+..|..+|.|.+|.|..-.. ...||||.|.+...+-.|+..+.+..|....+++..
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~r~gl 447 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTHRIGL 447 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcccccc
Confidence 456789999999999999999999999999999998875532 345999999999999999999999887766555554
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCc
Q psy2618 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160 (390)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 160 (390)
... .....+.+++++|...+....|...|..||.|..|.+-. ..-|++|.|.+...+..|++.+.+.
T Consensus 448 G~~-------kst~ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~h------gq~yayi~yes~~~aq~a~~~~rga 514 (975)
T KOG0112|consen 448 GQP-------KSTPTTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRH------GQPYAYIQYESPPAAQAATHDMRGA 514 (975)
T ss_pred ccc-------ccccceeeccCCCCCCChHHHHHHHhhccCcceeeeccc------CCcceeeecccCccchhhHHHHhcC
Confidence 432 344568899999999999999999999999999877633 3568999999999999999999999
Q ss_pred eeCC--eeEEEeecCC
Q psy2618 161 WLGS--RSIRTNWSTR 174 (390)
Q Consensus 161 ~~~g--~~i~v~~~~~ 174 (390)
.+++ +.+.|.++..
T Consensus 515 p~G~P~~r~rvdla~~ 530 (975)
T KOG0112|consen 515 PLGGPPRRLRVDLASP 530 (975)
T ss_pred cCCCCCcccccccccC
Confidence 9875 6678877754
No 134
>KOG4307|consensus
Probab=98.93 E-value=6e-08 Score=90.51 Aligned_cols=168 Identities=13% Similarity=0.070 Sum_probs=125.7
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeec--CCC-CCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGN-DPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~--~~~-~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.+-+.+++.+.++++.|+++||...- |.++.+.++ ..+ .|-++|+|....++.+|+++ |...+-.+.+.+...
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~rkfF~g~~-~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~r-n~~~~~~R~~q~~P~ 386 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGRKFFPGRN-AQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFTR-NPSDDVNRPFQTGPP 386 (944)
T ss_pred chhheeeecccccccccchhhhhcCccc-ccccchhhhhcCCCcCCceEEEecCcchHHHHHhc-CchhhhhcceeecCC
Confidence 5678889999999999999999997542 333333333 223 57999999999999999986 655555666666655
Q ss_pred CCCCCCC----------------------------------CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeE-EE
Q psy2618 82 SSPGNQP----------------------------------KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN-CR 126 (390)
Q Consensus 82 ~~~~~~~----------------------------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~-~~ 126 (390)
....... .........|||..||..+++.++.++|...-.|++ |.
T Consensus 387 g~~~~~~a~~~~~~~~~~~~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~ 466 (944)
T KOG4307|consen 387 GNLGRNGAPPFQAGVPPPVIQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIE 466 (944)
T ss_pred CccccccCccccccCCCCcccccCCCCCCCcccccCCCCCCCCCCCccceEEeccCCccccccchhhhhhhhhhhhheeE
Confidence 4322100 001122568999999999999999999998878777 66
Q ss_pred EeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 127 ~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
+.+.+ +++.++.|||.|.+++++.+|...-+.+.++.+.|+|+....+
T Consensus 467 lt~~P-~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~~ 514 (944)
T KOG4307|consen 467 LTRLP-TDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIADY 514 (944)
T ss_pred eccCC-cccccchhhheeccccccchhhhcccccccCceEEEeechhhH
Confidence 55554 4578899999999999999998877888889999999865443
No 135
>KOG4208|consensus
Probab=98.87 E-value=7.6e-09 Score=82.56 Aligned_cols=80 Identities=24% Similarity=0.378 Sum_probs=70.5
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhccc-CCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQI-GPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~-G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
......++|..||.-..+.++..+|..+ |.|..+++.++++ ++|||||+|++.+.|+-|.+.||+..|.++-|.+.
T Consensus 46 ~~~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~ 125 (214)
T KOG4208|consen 46 QEIEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECH 125 (214)
T ss_pred cCCccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeE
Confidence 4456778999999999999999999999 7777787767665 78999999999999999999999999999999998
Q ss_pred ecCC
Q psy2618 80 WASS 83 (390)
Q Consensus 80 ~~~~ 83 (390)
+-.+
T Consensus 126 vmpp 129 (214)
T KOG4208|consen 126 VMPP 129 (214)
T ss_pred EeCc
Confidence 7654
No 136
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.84 E-value=1.2e-08 Score=69.04 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=47.3
Q ss_pred CeEEEeCCChhccHHHHH----HHhcccC-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 8 TTLYVGNLDVSVTEELLC----ALFSQIG-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~----~~f~~~G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+.|+|.|||.+.+...|+ +++..+| .|.+|. .+.|+|.|.+.+.|++|.++|+|..+.|++|.|.+..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v~-------~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSVS-------GGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEEe-------CCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 579999999988877665 5555665 566652 3579999999999999999999999999999999885
Q ss_pred C
Q psy2618 83 S 83 (390)
Q Consensus 83 ~ 83 (390)
.
T Consensus 76 ~ 76 (90)
T PF11608_consen 76 K 76 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 137
>KOG0226|consensus
Probab=98.83 E-value=3.8e-09 Score=86.71 Aligned_cols=168 Identities=18% Similarity=0.361 Sum_probs=122.9
Q ss_pred CCceEEEEcCCCcccCHHH-H--HHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 93 SNHYHIFVGDLSPEIETQT-L--KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~-l--~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.....++++++-..+..+- | ...|+.+-.+....++++.. +.-++++|+.|.....-.++-..-+++.+....+++
T Consensus 94 P~vf~p~~~~~g~~v~pep~lp~~~~f~~~p~L~ktk~v~~~p-~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~ 172 (290)
T KOG0226|consen 94 PAVFRPFQSNAGATVNPEPPLPLPVVFSEYPSLVKTKLVRDRP-QPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRL 172 (290)
T ss_pred cccccccccccccccCCCCCCcchhhhccchhhhhhhhhhcCC-CccCcccccCcchhhhhhhhccccccccccCcceee
Confidence 3345666777766666554 3 56677666666666777643 356899999999888777776665666666665554
Q ss_pred eecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CC
Q psy2618 170 NWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KG 243 (390)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g 243 (390)
.-.+..... ...+......+||++.|..+++++.|...|.+|-.....+++++ +|
T Consensus 173 a~gtswedP-------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdkRTgKSkg 233 (290)
T KOG0226|consen 173 AAGTSWEDP-------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDKRTGKSKG 233 (290)
T ss_pred ccccccCCc-------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhcccccccccccccc
Confidence 433322211 11233344567999999999999999999999988877777766 79
Q ss_pred eEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 244 YAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 244 ~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
++||-|.+.+++..|++.|+|+.++.+.|.+.-+..+
T Consensus 234 ygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wk 270 (290)
T KOG0226|consen 234 YGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWK 270 (290)
T ss_pred ceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHH
Confidence 9999999999999999999999999999888655443
No 138
>KOG4210|consensus
Probab=98.79 E-value=8e-09 Score=90.28 Aligned_cols=174 Identities=22% Similarity=0.309 Sum_probs=135.9
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
....++|++++.+.+.+.+...++...|.+....+........++|++.+.|...+.+..|+.......+.++.+.....
T Consensus 86 ~~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~dl~ 165 (285)
T KOG4210|consen 86 GSSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEKDLN 165 (285)
T ss_pred cccccccccccccchhhccccccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccCccc
Confidence 35678999999999999999999999998777777776677789999999999999999999765555777766665554
Q ss_pred CCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEE
Q psy2618 173 TRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAF 246 (390)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~f 246 (390)
........+..... .........+|++++..+++++|+..|..+|.|..+++... +++++
T Consensus 166 ~~~~~~~~n~~~~~--------------~~~~s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~ 231 (285)
T KOG4210|consen 166 TRRGLRPKNKLSRL--------------SSGPSDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAY 231 (285)
T ss_pred ccccccccchhccc--------------ccCccccceeecccccccchHHHhhhccCcCcceeeccCCCCCccchhhhhh
Confidence 43331111111111 11122233459999999999999999999999999999865 68999
Q ss_pred EEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 247 VKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 247 v~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
|.|.+...+.+++.. ....+.++.+.+.+..+..
T Consensus 232 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 265 (285)
T KOG4210|consen 232 VDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRP 265 (285)
T ss_pred hhhhhchhHHHHhhc-ccCcccCcccccccCCCCc
Confidence 999999999999987 7888999999998877664
No 139
>KOG4661|consensus
Probab=98.77 E-value=2.3e-08 Score=91.07 Aligned_cols=82 Identities=23% Similarity=0.443 Sum_probs=75.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
.+.|||.+|+..+-..+|+.+|++||.|...+|+.+..+.-.+.|+||++.+.++|.+||+.|+...|.|+.|.|+.+..
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 57899999999999999999999999999999999877766789999999999999999999999999999999998765
Q ss_pred CC
Q psy2618 175 KP 176 (390)
Q Consensus 175 ~~ 176 (390)
.+
T Consensus 485 Ep 486 (940)
T KOG4661|consen 485 EP 486 (940)
T ss_pred Cc
Confidence 43
No 140
>KOG0533|consensus
Probab=98.65 E-value=1.2e-07 Score=79.80 Aligned_cols=82 Identities=27% Similarity=0.296 Sum_probs=71.6
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+.-+++|.|.|||..++++||+++|..||.+..+-+-.+.. +.|.|-|.|...++|+.|++.+++..+.|+.+++...
T Consensus 80 ~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i 159 (243)
T KOG0533|consen 80 ETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEII 159 (243)
T ss_pred CCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEe
Confidence 34458899999999999999999999999888777766654 5689999999999999999999999999999999877
Q ss_pred CCCC
Q psy2618 82 SSPG 85 (390)
Q Consensus 82 ~~~~ 85 (390)
.+..
T Consensus 160 ~~~~ 163 (243)
T KOG0533|consen 160 SSPS 163 (243)
T ss_pred cCcc
Confidence 6543
No 141
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.65 E-value=1.4e-07 Score=67.62 Aligned_cols=77 Identities=22% Similarity=0.272 Sum_probs=59.7
Q ss_pred CCeEEEeCCChhccHHHHHHHhccc--CCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeec----cceee
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQI--GPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFL----EKEMK 77 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~--G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~----g~~l~ 77 (390)
++||.|+|||...+.++|.+++... |...-+-+-.|. .+.|||||.|.+.+.|.+..+.++|..|. .|...
T Consensus 1 RTTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~ 80 (97)
T PF04059_consen 1 RTTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCE 80 (97)
T ss_pred CeeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEE
Confidence 5899999999999999999888654 443333333332 36799999999999999999999999886 35566
Q ss_pred EeecCC
Q psy2618 78 VNWASS 83 (390)
Q Consensus 78 v~~~~~ 83 (390)
|.+|+-
T Consensus 81 i~yAri 86 (97)
T PF04059_consen 81 ISYARI 86 (97)
T ss_pred EehhHh
Confidence 666654
No 142
>KOG0533|consensus
Probab=98.60 E-value=2e-07 Score=78.45 Aligned_cols=84 Identities=29% Similarity=0.404 Sum_probs=74.8
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
....+.+|.|.||+..+++++|+++|..||.+..+.+..+ .+|++.|.|-|.|...++|..|++.+++..++|+.+.+.
T Consensus 79 ~~~~~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~-~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~ 157 (243)
T KOG0533|consen 79 NETRSTKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYD-RAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIE 157 (243)
T ss_pred cCCCcceeeeecCCcCcchHHHHHHHHHhccceEEeeccC-CCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeE
Confidence 3445578999999999999999999999998888888777 567899999999999999999999999999999999988
Q ss_pred ecCCC
Q psy2618 171 WSTRK 175 (390)
Q Consensus 171 ~~~~~ 175 (390)
.....
T Consensus 158 ~i~~~ 162 (243)
T KOG0533|consen 158 IISSP 162 (243)
T ss_pred EecCc
Confidence 76544
No 143
>KOG0151|consensus
Probab=98.60 E-value=1.2e-07 Score=88.86 Aligned_cols=80 Identities=33% Similarity=0.599 Sum_probs=72.9
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC------CCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG------NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~------~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
++-.+.|||+||++.++++.|...|..||+|.+|++...++ .+.++||-|-+..+|++|++.|+|..+.+.+++
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K 250 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEYEMK 250 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeeeeee
Confidence 45678999999999999999999999999999999986543 456999999999999999999999999999999
Q ss_pred EeecCC
Q psy2618 78 VNWASS 83 (390)
Q Consensus 78 v~~~~~ 83 (390)
+-|++.
T Consensus 251 ~gWgk~ 256 (877)
T KOG0151|consen 251 LGWGKA 256 (877)
T ss_pred eccccc
Confidence 999954
No 144
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.60 E-value=3.8e-07 Score=65.44 Aligned_cols=78 Identities=17% Similarity=0.244 Sum_probs=67.6
Q ss_pred eEEEEcCCCcccCHHHHHHHhCC--CCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC----CeeEEE
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAP--FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG----SRSIRT 169 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~----g~~i~v 169 (390)
++|+|+|||...|.++|.+++.. .|...-+.+..|..++.+.|||||.|.+++.|.+-.+.++|..+. .+.+.|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 68999999999999999988875 356777888899888889999999999999999999999988764 566777
Q ss_pred eecC
Q psy2618 170 NWST 173 (390)
Q Consensus 170 ~~~~ 173 (390)
.||.
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 7775
No 145
>KOG0116|consensus
Probab=98.54 E-value=5e-07 Score=82.44 Aligned_cols=74 Identities=19% Similarity=0.316 Sum_probs=64.2
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
..|||+|||.++++++|+++|+.||.|+...|... .+||||+|.+.++++.|+.+ +-..+++++|.|.-.+..
T Consensus 289 ~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~~ 367 (419)
T KOG0116|consen 289 LGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRPG 367 (419)
T ss_pred cceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEecccc
Confidence 34999999999999999999999999988877753 27999999999999999996 466789999999876654
Q ss_pred C
Q psy2618 281 E 281 (390)
Q Consensus 281 ~ 281 (390)
.
T Consensus 368 ~ 368 (419)
T KOG0116|consen 368 F 368 (419)
T ss_pred c
Confidence 3
No 146
>KOG0116|consensus
Probab=98.51 E-value=2.9e-07 Score=83.95 Aligned_cols=79 Identities=29% Similarity=0.416 Sum_probs=67.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
..+|||+|||.+++..+|+++|..||.|+...|......++...||||+|.+.+++..|+++ +...+++++|.|+....
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Veek~~ 366 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEEKRP 366 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEeccc
Confidence 34599999999999999999999999999988876543444459999999999999999977 68889999999986543
No 147
>KOG0151|consensus
Probab=98.39 E-value=1.9e-06 Score=81.05 Aligned_cols=85 Identities=19% Similarity=0.495 Sum_probs=75.9
Q ss_pred ccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC---------CCeEEEEecCHHHHHHHHHHhcCceecC
Q psy2618 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---------KGYAFVKFTTKETATHAIESIHNTDING 269 (390)
Q Consensus 199 ~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---------~g~~fv~f~~~~~a~~a~~~l~~~~~~g 269 (390)
+....+.++.|||+||+..++++.|...|..||.|..++|+-. +.++||.|.+..+|.+|++.|+|..+.+
T Consensus 167 fDdgDP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 167 FDDGDPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCCCCCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 3455677889999999999999999999999999999999833 6799999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q psy2618 270 HTVKCFWGKESENN 283 (390)
Q Consensus 270 ~~i~v~~~~~~~~~ 283 (390)
..+++-|++.-..+
T Consensus 247 ~e~K~gWgk~V~ip 260 (877)
T KOG0151|consen 247 YEMKLGWGKAVPIP 260 (877)
T ss_pred eeeeeccccccccC
Confidence 99999998766543
No 148
>KOG4209|consensus
Probab=98.38 E-value=5.5e-07 Score=76.12 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=72.0
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
+-+.+.|||+|+...++.+++...|+.+|.|..|.+.+++. .++||||+|.+.+.++++++ |++..+.+..+.+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~ 176 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTL 176 (231)
T ss_pred ccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceeee
Confidence 45678999999999999999999999999998888887764 57899999999999999998 999999999999997
Q ss_pred cCCC
Q psy2618 81 ASSP 84 (390)
Q Consensus 81 ~~~~ 84 (390)
....
T Consensus 177 ~r~~ 180 (231)
T KOG4209|consen 177 KRTN 180 (231)
T ss_pred eeee
Confidence 7653
No 149
>KOG4209|consensus
Probab=98.37 E-value=6.9e-07 Score=75.56 Aligned_cols=84 Identities=18% Similarity=0.324 Sum_probs=77.4
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
...+...+||+|+.+.++.+++...|+.||.|..+.+..++.++.++||+||+|.+.+.+.+++. |++..+.++.+.+.
T Consensus 97 ~~~d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt 175 (231)
T KOG4209|consen 97 KEVDAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVT 175 (231)
T ss_pred hccCCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccceee
Confidence 34567889999999999999999999999999999999999999999999999999999999997 99999999999998
Q ss_pred ecCCC
Q psy2618 171 WSTRK 175 (390)
Q Consensus 171 ~~~~~ 175 (390)
+....
T Consensus 176 ~~r~~ 180 (231)
T KOG4209|consen 176 LKRTN 180 (231)
T ss_pred eeeee
Confidence 87655
No 150
>KOG2193|consensus
Probab=98.33 E-value=4.7e-08 Score=86.02 Aligned_cols=152 Identities=22% Similarity=0.415 Sum_probs=120.6
Q ss_pred CeEEEeCCChhccHHHHHHHhccc--CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCee-eccceeeEeecCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQI--GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRV-FLEKEMKVNWASSP 84 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~--G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~-~~g~~l~v~~~~~~ 84 (390)
..++|+||.+.++.+||+.+|... +.-..+ ++ ..|||||+..+..-|.+|++.+++.. +.|+.+.+..+-..
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~k 76 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LV----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPK 76 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-ee----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhH
Confidence 468999999999999999999764 111112 11 24699999999999999999999876 78999998877553
Q ss_pred CCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEee-CCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVR-DPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 85 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~-~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
.. .++.+-|+|+|+...++.|..++..||.++.|..+. +..+ ...-|+|...+.++.|+.++++..+.
T Consensus 77 kq-------rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~et----avvnvty~~~~~~~~ai~kl~g~Q~e 145 (584)
T KOG2193|consen 77 KQ-------RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSET----AVVNVTYSAQQQHRQAIHKLNGPQLE 145 (584)
T ss_pred HH-------HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHH----HHHHHHHHHHHHHHHHHHhhcchHhh
Confidence 22 346699999999999999999999999999986532 2222 22346788999999999999999999
Q ss_pred CeeEEEeecCCC
Q psy2618 164 SRSIRTNWSTRK 175 (390)
Q Consensus 164 g~~i~v~~~~~~ 175 (390)
...+.+.|....
T Consensus 146 n~~~k~~YiPde 157 (584)
T KOG2193|consen 146 NQHLKVGYIPDE 157 (584)
T ss_pred hhhhhcccCchh
Confidence 999998886543
No 151
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.30 E-value=2.7e-06 Score=57.89 Aligned_cols=71 Identities=14% Similarity=0.357 Sum_probs=48.2
Q ss_pred ceeEEcCCCCCCcHHHH----HhhhcCCC-ceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 207 CTVYCGGFGKDLNEELV----SKVFSPFG-TIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l----~~~f~~~g-~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
+.|+|.|||.+.+...| +.++..+| .|..| ..+.|+|.|.+.+.|.+|.+.|+|..+.|++|.|+|.....
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v----~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~r 78 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV----SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKNR 78 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE----eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCcc
Confidence 35999999999887655 45555665 66666 36899999999999999999999999999999999985544
No 152
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.29 E-value=1.7e-06 Score=63.82 Aligned_cols=59 Identities=22% Similarity=0.256 Sum_probs=39.7
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCe
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKR 69 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~ 69 (390)
+.|+|.+++..++.++|++.|+.||.|.-|.+..... .|||.|.+.+.|..|++.+...
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999998888765444 8999999999999999987554
No 153
>KOG4676|consensus
Probab=98.24 E-value=6.2e-07 Score=78.38 Aligned_cols=153 Identities=17% Similarity=0.192 Sum_probs=113.8
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC------CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG------NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~------~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.....|.|.||.++++.++++.+|..+|+|.++++..+.+ ....|||.|.|...+..|-. |-++++-++-|.|
T Consensus 5 ~~~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdraliv 83 (479)
T KOG4676|consen 5 SSLGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRALIV 83 (479)
T ss_pred CCCceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeEEE
Confidence 3445899999999999999999999999999998875433 33599999999999998875 6777777777766
Q ss_pred eecCCCCCC-----------------------------C-CC---------------------CCCCceEEEEcCCCccc
Q psy2618 79 NWASSPGNQ-----------------------------P-KQ---------------------DTSNHYHIFVGDLSPEI 107 (390)
Q Consensus 79 ~~~~~~~~~-----------------------------~-~~---------------------~~~~~~~l~v~nl~~~~ 107 (390)
......... . .+ -+.-.+++.|++|...+
T Consensus 84 ~p~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~ 163 (479)
T KOG4676|consen 84 RPYGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAA 163 (479)
T ss_pred EecCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhh
Confidence 665321100 0 00 00014679999999999
Q ss_pred CHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 108 ~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
...++.+.|..+|.|.-..+. .+...-+|-++|....+...|+.. +|..+.
T Consensus 164 ~l~e~~e~f~r~Gev~ya~~a----sk~~s~~c~~sf~~qts~~halr~-~gre~k 214 (479)
T KOG4676|consen 164 ILPESGESFERKGEVSYAHTA----SKSRSSSCSHSFRKQTSSKHALRS-HGRERK 214 (479)
T ss_pred cchhhhhhhhhcchhhhhhhh----ccCCCcchhhhHhhhhhHHHHHHh-cchhhh
Confidence 999999999999998655443 334456788999999888888854 555543
No 154
>KOG2193|consensus
Probab=98.22 E-value=1.2e-07 Score=83.49 Aligned_cols=153 Identities=17% Similarity=0.329 Sum_probs=121.3
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCc-eeCCeeEEEeecCC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ-WLGSRSIRTNWSTR 174 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~-~~~g~~i~v~~~~~ 174 (390)
+.++++||.+..+..+|..+|..--.-.+-.++. ..||+||.+.+..-|.+|++.++++ .+.|+++.+..+.+
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~fl~------k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~ 75 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQFLV------KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVP 75 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcceee------ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhh
Confidence 4689999999999999999998642211111221 3689999999999999999999986 68899999887765
Q ss_pred CCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC---CCeEEEEecC
Q psy2618 175 KPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---KGYAFVKFTT 251 (390)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~~fv~f~~ 251 (390)
+... ++.+-|+|++...-++.|..++..||.+..+..... .-..-|+|.+
T Consensus 76 kkqr---------------------------srk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~ 128 (584)
T KOG2193|consen 76 KKQR---------------------------SRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSA 128 (584)
T ss_pred HHHH---------------------------hhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHH
Confidence 4221 123789999999999999999999999988866533 2334577889
Q ss_pred HHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 252 KETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 252 ~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
.+.+..|+..+++..+....+.+.|-....
T Consensus 129 ~~~~~~ai~kl~g~Q~en~~~k~~YiPdeq 158 (584)
T KOG2193|consen 129 QQQHRQAIHKLNGPQLENQHLKVGYIPDEQ 158 (584)
T ss_pred HHHHHHHHHhhcchHhhhhhhhcccCchhh
Confidence 999999999999999999999998865543
No 155
>KOG4849|consensus
Probab=98.20 E-value=4.2e-05 Score=66.12 Aligned_cols=78 Identities=18% Similarity=0.286 Sum_probs=68.4
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCC--eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGE--ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.....++||+||-|.+|++||.+.+...|. +.++++..++.+|.++|||+|...+..++++.++.|-.+.|.|..-.|
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 344678999999999999999999988775 788889999999999999999999999999999999988888865443
No 156
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.18 E-value=4.8e-06 Score=61.39 Aligned_cols=69 Identities=26% Similarity=0.502 Sum_probs=45.7
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCc-----eecCeEEEEE
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNT-----DINGHTVKCF 275 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~-----~~~g~~i~v~ 275 (390)
+.|.|.++...++.++|++.|+.||.|..|.+.+....|+|.|.+.+.|++|+..+... .+.+..+.+.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~ 75 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLE 75 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEE
Confidence 46889999999999999999999999999999999999999999999999999987543 4455555443
No 157
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=98.00 E-value=1.7e-05 Score=50.40 Aligned_cols=53 Identities=19% Similarity=0.275 Sum_probs=43.5
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHH
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATAL 63 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~ 63 (390)
++.|-|.+.+.+.. ++|..+|..||+|.++.+- ....++||+|++..+|++||
T Consensus 1 ~~wI~V~Gf~~~~~-~~vl~~F~~fGeI~~~~~~---~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 1 STWISVSGFPPDLA-EEVLEHFASFGEIVDIYVP---ESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CcEEEEEeECchHH-HHHHHHHHhcCCEEEEEcC---CCCcEEEEEECCHHHHHhhC
Confidence 46789999998755 4677799999999988764 23459999999999999985
No 158
>KOG4849|consensus
Probab=97.91 E-value=0.00015 Score=62.85 Aligned_cols=68 Identities=19% Similarity=0.402 Sum_probs=57.4
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCC--ceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEE
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFG--TIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKC 274 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g--~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 274 (390)
-++|||||-+.+|++||.+.+...| .+.++++..+ ||||+|...+....++.++.|-.+++.|..-.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 4699999999999999999988766 4566666644 799999999999999999999999998865554
No 159
>KOG4676|consensus
Probab=97.89 E-value=1.4e-05 Score=70.16 Aligned_cols=172 Identities=13% Similarity=0.100 Sum_probs=112.6
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCC---CCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE-e
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQT---LKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-N 170 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v-~ 170 (390)
...|-|.||.+.++.+.+..+|...|.|..+.|+..... ......|||.|.|...+..|-+. .+..+-++.|.| -
T Consensus 7 ~~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQhL-tntvfvdraliv~p 85 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQHL-TNTVFVDRALIVRP 85 (479)
T ss_pred CceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhhh-ccceeeeeeEEEEe
Confidence 347899999999999999999999999999998864332 12456899999999999888754 555555555544 3
Q ss_pred ecCCCCCCCcccccc--cC--------CCC-cccc---ccc--------------cc--cCCCCCcceeEEcCCCCCCcH
Q psy2618 171 WSTRKPPAMTNERKR--QN--------SHT-KTIT---FDE--------------VY--NQSSPTNCTVYCGGFGKDLNE 220 (390)
Q Consensus 171 ~~~~~~~~~~~~~~~--~~--------~~~-~~~~---~~~--------------~~--~~~~~~~~~l~v~~l~~~~~~ 220 (390)
+.....+........ .+ ... .... ... .. ........+++|++|...+..
T Consensus 86 ~~~~~~p~r~af~~l~~~navprll~pdg~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~kleeirRt~~v~sl~~~~~l 165 (479)
T KOG4676|consen 86 YGDEVIPDRFAFVELADQNAVPRLLPPDGVLPGDRPLTKINHSPNAILKTPELPPQAAAKKLEEIRRTREVQSLISAAIL 165 (479)
T ss_pred cCCCCCccHHHHHhcCcccccccccCCCCccCCCCccccccCCccceecCCCCChHhhhhhhHHHHhhhhhhcchhhhcc
Confidence 333222211000000 00 000 0000 000 00 000112357899999999999
Q ss_pred HHHHhhhcCCCceeEEEEecC--CCeEEEEecCHHHHHHHHHHhcCceec
Q psy2618 221 ELVSKVFSPFGTIVDIRVFKE--KGYAFVKFTTKETATHAIESIHNTDIN 268 (390)
Q Consensus 221 ~~l~~~f~~~g~v~~~~~~~~--~g~~fv~f~~~~~a~~a~~~l~~~~~~ 268 (390)
.++.+.|..+|+|...++-.. ..+|-+.|........|+. ++|..+.
T Consensus 166 ~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 166 PESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 999999999999987777643 5677889988888777877 4666554
No 160
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.85 E-value=7.4e-05 Score=54.11 Aligned_cols=76 Identities=18% Similarity=0.180 Sum_probs=53.3
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEe----------ecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVI----------REPGNDPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~----------~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
...++-|.|=+.|++ ....|.+.|++||.|++..-. .......+..|+|++..+|.+||.+ ||..+.|
T Consensus 3 ~~~~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~~-NG~i~~g 80 (100)
T PF05172_consen 3 QDSETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQK-NGTIFSG 80 (100)
T ss_dssp -GGCCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHTT-TTEEETT
T ss_pred CcCCeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHHh-CCeEEcC
Confidence 446778999999998 566899999999999877500 1123456999999999999999975 9999987
Q ss_pred cee-eEeec
Q psy2618 74 KEM-KVNWA 81 (390)
Q Consensus 74 ~~l-~v~~~ 81 (390)
.-+ -|.++
T Consensus 81 ~~mvGV~~~ 89 (100)
T PF05172_consen 81 SLMVGVKPC 89 (100)
T ss_dssp CEEEEEEE-
T ss_pred cEEEEEEEc
Confidence 543 35544
No 161
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.81 E-value=3.6e-05 Score=66.24 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=62.2
Q ss_pred CCeEEEeCCChhccHHHH------HHHhcccCCceEEEEeecCC----CCCeE--EEEEccHHHHHHHHHHhcCeeeccc
Q psy2618 7 PTTLYVGNLDVSVTEELL------CALFSQIGPVKGCKVIREPG----NDPYA--FLEFVHHTVAATALAAMNKRVFLEK 74 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l------~~~f~~~G~v~~v~~~~~~~----~~g~a--fV~F~~~~~A~~a~~~l~~~~~~g~ 74 (390)
+.-|||-+||+.+..+++ .++|.+||.|..|.+.+... ..+.+ ||+|.+.|+|.+||...+|..++|+
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 345899999988777763 38999999999887654331 12234 9999999999999999999999999
Q ss_pred eeeEeecCC
Q psy2618 75 EMKVNWASS 83 (390)
Q Consensus 75 ~l~v~~~~~ 83 (390)
.|+..+...
T Consensus 194 ~lkatYGTT 202 (480)
T COG5175 194 VLKATYGTT 202 (480)
T ss_pred eEeeecCch
Confidence 999998764
No 162
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.77 E-value=9e-05 Score=63.88 Aligned_cols=81 Identities=19% Similarity=0.485 Sum_probs=64.2
Q ss_pred ceEEEEcCCCcccCHHHH------HHHhCCCCCeeEEEEeeCCCCCC-CCc--EEEEEecCHHHHHHHHHHhcCceeCCe
Q psy2618 95 HYHIFVGDLSPEIETQTL------KEAFAPFGEISNCRIVRDPQTLK-SKG--YAFVSFVKKAEAENAITAMNGQWLGSR 165 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l------~~~f~~~G~i~~~~~~~~~~~g~-~~g--~afv~f~~~~~a~~a~~~l~~~~~~g~ 165 (390)
.+-+||-+|++.+..|++ .++|.+||.|..|.+-+...+.. ..+ -.||+|.+.++|.+|+.+.+|..++||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 567899999988777762 67899999999987765432211 122 249999999999999999999999999
Q ss_pred eEEEeecCCC
Q psy2618 166 SIRTNWSTRK 175 (390)
Q Consensus 166 ~i~v~~~~~~ 175 (390)
.|+..+...+
T Consensus 194 ~lkatYGTTK 203 (480)
T COG5175 194 VLKATYGTTK 203 (480)
T ss_pred eEeeecCchH
Confidence 9999987654
No 163
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.71 E-value=8.7e-05 Score=47.11 Aligned_cols=51 Identities=35% Similarity=0.625 Sum_probs=43.2
Q ss_pred eeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHH
Q psy2618 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAI 259 (390)
Q Consensus 208 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~ 259 (390)
.|-|.|.+.+..+. +..+|..||+|.++.+.......+|+|.+..+|.+|+
T Consensus 3 wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 3 WISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred EEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCcEEEEEECCHHHHHhhC
Confidence 47788888776644 5558889999999999877899999999999999985
No 164
>KOG1855|consensus
Probab=97.69 E-value=3e-05 Score=68.99 Aligned_cols=68 Identities=21% Similarity=0.330 Sum_probs=58.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC----------------CCCeEEEEEccHHHHHHHHHHh
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG----------------NDPYAFLEFVHHTVAATALAAM 66 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~----------------~~g~afV~F~~~~~A~~a~~~l 66 (390)
++-++++|.+-|||.+-..+.|.++|+.+|.|.+|+|.+-.. .+-+|+|+|...+.|++|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 456899999999999999999999999999999999986511 1348999999999999999987
Q ss_pred cCee
Q psy2618 67 NKRV 70 (390)
Q Consensus 67 ~~~~ 70 (390)
+...
T Consensus 307 ~~e~ 310 (484)
T KOG1855|consen 307 NPEQ 310 (484)
T ss_pred chhh
Confidence 6544
No 165
>KOG0115|consensus
Probab=97.64 E-value=0.00014 Score=60.54 Aligned_cols=91 Identities=24% Similarity=0.306 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCeeeccceeeEeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCC
Q psy2618 57 TVAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKS 136 (390)
Q Consensus 57 ~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~ 136 (390)
.-|+.|..+|+++...++.+.|.++.. ..|+|.||...++-+.+...|+.||+|..-.++.| ..++.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~~------------a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD-~r~k~ 71 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAMH------------AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVD-DRGKP 71 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeecc------------ceEEEEecchhhhhHHHHHhhhhcCccchheeeec-ccccc
Confidence 456777788999999999999999974 67999999999999999999999999988777766 45688
Q ss_pred CcEEEEEecCHHHHHHHHHHhcCc
Q psy2618 137 KGYAFVSFVKKAEAENAITAMNGQ 160 (390)
Q Consensus 137 ~g~afv~f~~~~~a~~a~~~l~~~ 160 (390)
.+-++|.|...-.+.+|+..+...
T Consensus 72 t~eg~v~~~~k~~a~~a~rr~~~~ 95 (275)
T KOG0115|consen 72 TREGIVEFAKKPNARKAARRCREG 95 (275)
T ss_pred cccchhhhhcchhHHHHHHHhccC
Confidence 899999999999999999887533
No 166
>KOG1995|consensus
Probab=97.63 E-value=5.2e-05 Score=66.28 Aligned_cols=86 Identities=24% Similarity=0.290 Sum_probs=76.3
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCee--------EEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS--------NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
.....+|||-+|+..+++.+|.++|.++|.|. .|++-+++.|++.++-|.|+|.|...|+.|+.-++++.+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 34467899999999999999999999998763 4667788899999999999999999999999999999999
Q ss_pred CeeEEEeecCCCCC
Q psy2618 164 SRSIRTNWSTRKPP 177 (390)
Q Consensus 164 g~~i~v~~~~~~~~ 177 (390)
+..|+|..+..+..
T Consensus 143 gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 143 GNTIKVSLAERRTG 156 (351)
T ss_pred CCCchhhhhhhccC
Confidence 99999998876653
No 167
>KOG2591|consensus
Probab=97.58 E-value=0.0013 Score=60.80 Aligned_cols=70 Identities=13% Similarity=0.262 Sum_probs=57.7
Q ss_pred cceeEEcCCCCCCcHHHHHhhhcC--CCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcC--ceecCeEEEEEe
Q psy2618 206 NCTVYCGGFGKDLNEELVSKVFSP--FGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHN--TDINGHTVKCFW 276 (390)
Q Consensus 206 ~~~l~v~~l~~~~~~~~l~~~f~~--~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~ 276 (390)
.|.|+++.|+..+.+|+++.+|+. +-.+++|.+-.+.+ -||+|++..||++|.+.|.. ++|.||.|...+
T Consensus 175 RcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n-WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 175 RCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred eeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 477999999999999999999965 67889998876654 49999999999999998854 357788766543
No 168
>KOG3152|consensus
Probab=97.55 E-value=4.3e-05 Score=63.48 Aligned_cols=70 Identities=20% Similarity=0.267 Sum_probs=60.6
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCC--------C-------CeEEEEEccHHHHHHHHHHhcCee
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN--------D-------PYAFLEFVHHTVAATALAAMNKRV 70 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~--------~-------g~afV~F~~~~~A~~a~~~l~~~~ 70 (390)
..-.||+++||+..+..-|+++|+.||.|-.|.+.....+ + .-++|+|.+...|.++.+.||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4568999999999999999999999999998887655432 1 168999999999999999999999
Q ss_pred eccce
Q psy2618 71 FLEKE 75 (390)
Q Consensus 71 ~~g~~ 75 (390)
+.|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98864
No 169
>KOG1995|consensus
Probab=97.52 E-value=0.00011 Score=64.40 Aligned_cols=84 Identities=23% Similarity=0.240 Sum_probs=70.3
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCce--------EEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCee
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVK--------GCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRV 70 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~--------~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~ 70 (390)
++.+...+|||.+||..+++.+|.++|.++|.|. .|++-+++. .|+-|.|.|.+...|..|+.-+++..
T Consensus 61 ~~~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkd 140 (351)
T KOG1995|consen 61 ADKSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKD 140 (351)
T ss_pred ccccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccc
Confidence 4456778999999999999999999999998763 233333332 67899999999999999999999999
Q ss_pred eccceeeEeecCCCC
Q psy2618 71 FLEKEMKVNWASSPG 85 (390)
Q Consensus 71 ~~g~~l~v~~~~~~~ 85 (390)
+++..|+|..+....
T Consensus 141 f~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 141 FCGNTIKVSLAERRT 155 (351)
T ss_pred ccCCCchhhhhhhcc
Confidence 999999999887644
No 170
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.37 E-value=0.0012 Score=50.77 Aligned_cols=73 Identities=18% Similarity=0.233 Sum_probs=53.7
Q ss_pred CCCCeEEEeCCC------hhccH---HHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccce
Q psy2618 5 SQPTTLYVGNLD------VSVTE---ELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKE 75 (390)
Q Consensus 5 ~~~~~l~v~nLp------~~~~~---~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~ 75 (390)
++.-||.|+=+. ...++ .+|.+.|..||.|.-|+++.+ .-+|+|.+-+.|.+|++ ++|..++|+.
T Consensus 25 PpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~-----~mwVTF~dg~sALaals-~dg~~v~g~~ 98 (146)
T PF08952_consen 25 PPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD-----TMWVTFRDGQSALAALS-LDGIQVNGRT 98 (146)
T ss_dssp -TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT-----CEEEEESSCHHHHHHHH-GCCSEETTEE
T ss_pred CCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC-----eEEEEECccHHHHHHHc-cCCcEECCEE
Confidence 456677776555 22222 378889999999998988754 58999999999999996 7999999999
Q ss_pred eeEeecCC
Q psy2618 76 MKVNWASS 83 (390)
Q Consensus 76 l~v~~~~~ 83 (390)
|+|+...+
T Consensus 99 l~i~LKtp 106 (146)
T PF08952_consen 99 LKIRLKTP 106 (146)
T ss_dssp EEEEE---
T ss_pred EEEEeCCc
Confidence 99997655
No 171
>KOG1855|consensus
Probab=97.36 E-value=0.00066 Score=60.76 Aligned_cols=81 Identities=19% Similarity=0.269 Sum_probs=64.1
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeC---CCCC--C--------CCcEEEEEecCHHHHHHHHHHh
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD---PQTL--K--------SKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~---~~~g--~--------~~g~afv~f~~~~~a~~a~~~l 157 (390)
.....++|.+.|||.+-..+.|.++|..+|.|..|++..- +.+. . .+-+|+|+|...+.|.+|.+.+
T Consensus 227 eel~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~ 306 (484)
T KOG1855|consen 227 EELPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELL 306 (484)
T ss_pred cccccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhh
Confidence 3457899999999999889999999999999999999765 3322 1 1457999999999999999888
Q ss_pred cCceeCCeeEEEee
Q psy2618 158 NGQWLGSRSIRTNW 171 (390)
Q Consensus 158 ~~~~~~g~~i~v~~ 171 (390)
+....+..-++|.+
T Consensus 307 ~~e~~wr~glkvkL 320 (484)
T KOG1855|consen 307 NPEQNWRMGLKVKL 320 (484)
T ss_pred chhhhhhhcchhhh
Confidence 76655544455444
No 172
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.34 E-value=0.0014 Score=47.45 Aligned_cols=71 Identities=21% Similarity=0.232 Sum_probs=52.2
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeEEE-------------EecCCCeEEEEecCHHHHHHHHHHhcCceecCe-EE
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIR-------------VFKEKGYAFVKFTTKETATHAIESIHNTDINGH-TV 272 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~-------------~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~i 272 (390)
+-|.|-+.|... ...|.+.|++||.|++.. .........|+|++..+|.+|+. -||..+.|. .+
T Consensus 7 ~wVtVFGfp~~~-~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~mv 84 (100)
T PF05172_consen 7 TWVTVFGFPPSA-SNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLMV 84 (100)
T ss_dssp CEEEEE---GGG-HHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEEE
T ss_pred eEEEEEccCHHH-HHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEEE
Confidence 448888999884 466778899999998885 55567889999999999999999 499989875 56
Q ss_pred EEEeccc
Q psy2618 273 KCFWGKE 279 (390)
Q Consensus 273 ~v~~~~~ 279 (390)
-|.+.++
T Consensus 85 GV~~~~~ 91 (100)
T PF05172_consen 85 GVKPCDP 91 (100)
T ss_dssp EEEE-HH
T ss_pred EEEEcHH
Confidence 6777643
No 173
>KOG2202|consensus
Probab=97.34 E-value=9.8e-05 Score=61.58 Aligned_cols=61 Identities=26% Similarity=0.423 Sum_probs=52.8
Q ss_pred HHHHhhhc-CCCceeEEEEecC-----CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 221 ELVSKVFS-PFGTIVDIRVFKE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 221 ~~l~~~f~-~~g~v~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
++|...|+ +||+|+.+.+..+ +|-++|.|..+++|.+|++.||+.++.|+.|...+.....
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT~ 149 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVTD 149 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcCc
Confidence 45555555 8999999988876 6899999999999999999999999999999998876554
No 174
>KOG2314|consensus
Probab=97.29 E-value=0.00065 Score=62.87 Aligned_cols=78 Identities=22% Similarity=0.319 Sum_probs=62.1
Q ss_pred CCCceEEEEcCCCccc--C----HHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCe
Q psy2618 92 TSNHYHIFVGDLSPEI--E----TQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSR 165 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~--~----~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 165 (390)
..-...|+|.|+|--- - ..-|..+|+++|+|.+..+..+..+| .+||.|++|.+..+|+.|++.|+|+.++.+
T Consensus 55 eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~gg-tkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 55 EGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGG-TKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred CCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCC-eeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 3556789999998421 1 12367789999999999998887776 999999999999999999999999988654
Q ss_pred -eEEEe
Q psy2618 166 -SIRTN 170 (390)
Q Consensus 166 -~i~v~ 170 (390)
+..|.
T Consensus 134 Htf~v~ 139 (698)
T KOG2314|consen 134 HTFFVR 139 (698)
T ss_pred ceEEee
Confidence 33443
No 175
>KOG0115|consensus
Probab=97.29 E-value=0.00053 Score=57.18 Aligned_cols=84 Identities=21% Similarity=0.341 Sum_probs=71.9
Q ss_pred HHHHHHHHhcCceeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhc
Q psy2618 149 EAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFS 228 (390)
Q Consensus 149 ~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~ 228 (390)
-|..|..+|++....++.++|.|+... .|+|.||...++.+.|...|+
T Consensus 6 ~ae~ak~eLd~~~~~~~~lr~rfa~~a--------------------------------~l~V~nl~~~~sndll~~~f~ 53 (275)
T KOG0115|consen 6 LAEIAKRELDGRFPKGRSLRVRFAMHA--------------------------------ELYVVNLMQGASNDLLEQAFR 53 (275)
T ss_pred HHHHHHHhcCCCCCCCCceEEEeeccc--------------------------------eEEEEecchhhhhHHHHHhhh
Confidence 356677788999999999999998652 399999999999999999999
Q ss_pred CCCceeEEEEecC-----CCeEEEEecCHHHHHHHHHHhcC
Q psy2618 229 PFGTIVDIRVFKE-----KGYAFVKFTTKETATHAIESIHN 264 (390)
Q Consensus 229 ~~g~v~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~ 264 (390)
.||.|....++-+ .+-++|.|...-.|.+|+..+.-
T Consensus 54 ~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~ 94 (275)
T KOG0115|consen 54 RFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCRE 94 (275)
T ss_pred hcCccchheeeecccccccccchhhhhcchhHHHHHHHhcc
Confidence 9999987777644 56889999999999999998743
No 176
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.25 E-value=0.002 Score=49.66 Aligned_cols=81 Identities=21% Similarity=0.338 Sum_probs=54.4
Q ss_pred ccccCCCCCcceeEEcCCC-----CCCcH----HHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCcee
Q psy2618 197 EVYNQSSPTNCTVYCGGFG-----KDLNE----ELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDI 267 (390)
Q Consensus 197 ~~~~~~~~~~~~l~v~~l~-----~~~~~----~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~ 267 (390)
++.....|+..+|.|.-+. ....+ .+|.+.|..||+++-+++.. +.-+|+|.+-+.|.+|+. ++|..+
T Consensus 18 eVi~~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~--~~mwVTF~dg~sALaals-~dg~~v 94 (146)
T PF08952_consen 18 EVISSQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVG--DTMWVTFRDGQSALAALS-LDGIQV 94 (146)
T ss_dssp --S-----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEET--TCEEEEESSCHHHHHHHH-GCCSEE
T ss_pred HHHHhcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeC--CeEEEEECccHHHHHHHc-cCCcEE
Confidence 3444556667778777666 12223 36778889999999888875 478999999999999998 899999
Q ss_pred cCeEEEEEecccC
Q psy2618 268 NGHTVKCFWGKES 280 (390)
Q Consensus 268 ~g~~i~v~~~~~~ 280 (390)
+|+.|+|+...+.
T Consensus 95 ~g~~l~i~LKtpd 107 (146)
T PF08952_consen 95 NGRTLKIRLKTPD 107 (146)
T ss_dssp TTEEEEEEE----
T ss_pred CCEEEEEEeCCcc
Confidence 9999999887654
No 177
>KOG2314|consensus
Probab=97.22 E-value=0.001 Score=61.57 Aligned_cols=79 Identities=20% Similarity=0.272 Sum_probs=60.1
Q ss_pred CCCCCCeEEEeCCCh--hccHH----HHHHHhcccCCceEEEEeecC--CCCCeEEEEEccHHHHHHHHHHhcCeeecc-
Q psy2618 3 DESQPTTLYVGNLDV--SVTEE----LLCALFSQIGPVKGCKVIREP--GNDPYAFLEFVHHTVAATALAAMNKRVFLE- 73 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~--~~~~~----~l~~~f~~~G~v~~v~~~~~~--~~~g~afV~F~~~~~A~~a~~~l~~~~~~g- 73 (390)
++--...|.|.|+|. ....+ -|.++|+++|+|..+.+-.+. +.+||.|++|.+..+|..|++.|||..+.-
T Consensus 54 ~eg~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 54 AEGFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred cCCcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 345677899999993 23333 345789999999988776443 378999999999999999999999998764
Q ss_pred ceeeEeec
Q psy2618 74 KEMKVNWA 81 (390)
Q Consensus 74 ~~l~v~~~ 81 (390)
.++.|..-
T Consensus 134 Htf~v~~f 141 (698)
T KOG2314|consen 134 HTFFVRLF 141 (698)
T ss_pred ceEEeehh
Confidence 45555443
No 178
>KOG3152|consensus
Probab=97.20 E-value=0.00021 Score=59.52 Aligned_cols=73 Identities=15% Similarity=0.360 Sum_probs=62.6
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCC--------CCCC----cEEEEEecCHHHHHHHHHHhcCce
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQT--------LKSK----GYAFVSFVKKAEAENAITAMNGQW 161 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~--------g~~~----g~afv~f~~~~~a~~a~~~l~~~~ 161 (390)
....||+++||+.++...|+++|+.||.|-.|.+-....+ |.+. .-++|+|.+...|..+...||+..
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 4578999999999999999999999999999998766554 2222 347999999999999999999999
Q ss_pred eCCee
Q psy2618 162 LGSRS 166 (390)
Q Consensus 162 ~~g~~ 166 (390)
|+|++
T Consensus 153 Iggkk 157 (278)
T KOG3152|consen 153 IGGKK 157 (278)
T ss_pred cCCCC
Confidence 98875
No 179
>KOG2416|consensus
Probab=97.15 E-value=0.00034 Score=65.02 Aligned_cols=77 Identities=16% Similarity=0.169 Sum_probs=64.2
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhc-ccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeec---cceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFS-QIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFL---EKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~-~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~~l~v~ 79 (390)
.+.+..|+|+||=.-.|...|+.++. ..|.|.+.||=+-+ ..|||.|.+.++|...+.+|+|..|. .+.|.+.
T Consensus 441 ~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIK---ShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~ad 517 (718)
T KOG2416|consen 441 KEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIK---SHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIAD 517 (718)
T ss_pred CCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhh---cceeEecccHHHHHHHHHHHhccccCCCCCceeEee
Confidence 45788999999998899999999998 56677777764433 37999999999999999999999985 4778887
Q ss_pred ecCC
Q psy2618 80 WASS 83 (390)
Q Consensus 80 ~~~~ 83 (390)
|...
T Consensus 518 f~~~ 521 (718)
T KOG2416|consen 518 FVRA 521 (718)
T ss_pred ecch
Confidence 7753
No 180
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.12 E-value=0.003 Score=47.91 Aligned_cols=75 Identities=19% Similarity=0.244 Sum_probs=58.1
Q ss_pred CCCCCCeEEEeCCC----hhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 3 DESQPTTLYVGNLD----VSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 3 ~~~~~~~l~v~nLp----~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.+.+-.||.|+=|. +.-+...|...++.||+|.+|... .+..|.|.|+|..+|-+|+.++.. ...|..+.+
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c----GrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC----GRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec----CCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 46788899887654 444455677888999999999763 344799999999999999999877 456777777
Q ss_pred eecC
Q psy2618 79 NWAS 82 (390)
Q Consensus 79 ~~~~ 82 (390)
.|..
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7754
No 181
>KOG2202|consensus
Probab=97.05 E-value=0.00031 Score=58.67 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=48.6
Q ss_pred HHHHHhc-ccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 23 LLCALFS-QIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 23 ~l~~~f~-~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+|...|+ +||.|.++++-.+.. -.|-+||.|...++|++|++.||+.-+.|++|...+..
T Consensus 84 d~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 84 DVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444444 899999887655432 46789999999999999999999999999999988663
No 182
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.98 E-value=0.0017 Score=52.89 Aligned_cols=83 Identities=17% Similarity=0.149 Sum_probs=49.5
Q ss_pred CCCCCCCCeEEEeCCChhccHHHHHHHhcc-cCCceEEEEe---ecCC-----CCCeEEEEEccHHHHHHHHHHhcCeee
Q psy2618 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQ-IGPVKGCKVI---REPG-----NDPYAFLEFVHHTVAATALAAMNKRVF 71 (390)
Q Consensus 1 ~~~~~~~~~l~v~nLp~~~~~~~l~~~f~~-~G~v~~v~~~---~~~~-----~~g~afV~F~~~~~A~~a~~~l~~~~~ 71 (390)
|..+.....|.||+||++.+++++.+.++. ++.-..+... .... .-.-|||.|.+.+++....+.++|..|
T Consensus 1 ~~~~~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 1 MKKEKEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp --------EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred CCCcccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 456778899999999999999999998887 6655222222 2211 113699999999999999999999887
Q ss_pred cc-----ceeeEeecCC
Q psy2618 72 LE-----KEMKVNWASS 83 (390)
Q Consensus 72 ~g-----~~l~v~~~~~ 83 (390)
.+ ....|++|..
T Consensus 81 ~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 81 VDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp E-TTS-EEEEEEEE-SS
T ss_pred ECCCCCCcceeEEEcch
Confidence 54 3344555543
No 183
>KOG1996|consensus
Probab=96.93 E-value=0.0023 Score=54.40 Aligned_cols=76 Identities=20% Similarity=0.246 Sum_probs=57.8
Q ss_pred CCeEEEeCC--ChhccH---HHHHHHhcccCCceEEEEeecCC----CCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 7 PTTLYVGNL--DVSVTE---ELLCALFSQIGPVKGCKVIREPG----NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 7 ~~~l~v~nL--p~~~~~---~~l~~~f~~~G~v~~v~~~~~~~----~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
.+.|.++|. +-.+++ +++++-+++||.|..|.|..... ..--.||+|+..++|.+|+-.|||+.|.|+.++
T Consensus 281 tkvlllrnmVg~gevd~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~ 360 (378)
T KOG1996|consen 281 TKVLLLRNMVGAGEVDEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVS 360 (378)
T ss_pred hHHHHhhhhcCcccccHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeee
Confidence 344555554 233443 47889999999999988876653 112579999999999999999999999999888
Q ss_pred EeecC
Q psy2618 78 VNWAS 82 (390)
Q Consensus 78 v~~~~ 82 (390)
..+..
T Consensus 361 A~Fyn 365 (378)
T KOG1996|consen 361 ACFYN 365 (378)
T ss_pred heecc
Confidence 77654
No 184
>KOG1996|consensus
Probab=96.81 E-value=0.0032 Score=53.57 Aligned_cols=61 Identities=18% Similarity=0.316 Sum_probs=51.9
Q ss_pred HHHHHhhhcCCCceeEEEEecCC-------CeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 220 EELVSKVFSPFGTIVDIRVFKEK-------GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 220 ~~~l~~~f~~~g~v~~~~~~~~~-------g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
++++++.+++||.|..|.|.... --.||+|...++|.+|+-.|||+.|+|+.+...|....
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn~e 367 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYNLE 367 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheeccHH
Confidence 46778889999999999887542 35799999999999999999999999999988775543
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.60 E-value=0.018 Score=42.68 Aligned_cols=68 Identities=13% Similarity=0.175 Sum_probs=50.1
Q ss_pred CCCeEEEeCCChhccHHHHHHHhccc-CCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQI-GPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~-G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
....+-+-..|..++-++|..+.+.+ ..|..++++++.. ++=-+.++|++.++|+...+.+||+.++.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 33344444445556666777666665 3577899998876 45578999999999999999999988754
No 186
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.52 E-value=0.016 Score=37.76 Aligned_cols=54 Identities=26% Similarity=0.391 Sum_probs=44.3
Q ss_pred CCeEEEeCCChhccHHHHHHHhccc----CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQI----GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM 66 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~----G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l 66 (390)
...|+|+|+.. .+.++|+.+|..| ++ ..|.-+.|.. |=|-|.+.+.|.+||.+|
T Consensus 5 peavhirGvd~-lsT~dI~~y~~~y~~~~~~-~~IEWIdDtS----cNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIKAYFSEYFDEEGP-FRIEWIDDTS----CNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHHHHHHHhcccCCC-ceEEEecCCc----EEEEECCHHHHHHHHHcC
Confidence 45799999965 7888999999999 65 4576676654 999999999999999764
No 187
>KOG2416|consensus
Probab=96.51 E-value=0.0024 Score=59.68 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=67.4
Q ss_pred CCCCcceeEEcCCCCCCcHHHHHhhhcC-CCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCcee---cCeEEEEEec
Q psy2618 202 SSPTNCTVYCGGFGKDLNEELVSKVFSP-FGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDI---NGHTVKCFWG 277 (390)
Q Consensus 202 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~-~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~---~g~~i~v~~~ 277 (390)
....++.|+|.||-.-.|.-.|+.++.. .|.|++.-|.+-+..|||.|.+.++|.....+|||..+ +.+.|.+.|.
T Consensus 440 R~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~ 519 (718)
T KOG2416|consen 440 RKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFV 519 (718)
T ss_pred CCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeec
Confidence 4556789999999999999999999985 55666663333488999999999999999999999976 6799999998
Q ss_pred ccCCC
Q psy2618 278 KESEN 282 (390)
Q Consensus 278 ~~~~~ 282 (390)
.....
T Consensus 520 ~~del 524 (718)
T KOG2416|consen 520 RADEL 524 (718)
T ss_pred chhHH
Confidence 76653
No 188
>KOG2591|consensus
Probab=96.37 E-value=0.0058 Score=56.73 Aligned_cols=73 Identities=16% Similarity=0.240 Sum_probs=59.5
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcc--cCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCe--eeccceeeEee
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQ--IGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKR--VFLEKEMKVNW 80 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~--~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 80 (390)
..+|.|.||-||..+..|+|+.+|.. +-++.+|.+..+.. =||+|++..+|..|.+.|... .|.||.|..+.
T Consensus 173 ~kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n----WyITfesd~DAQqAykylreevk~fqgKpImARI 248 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN----WYITFESDTDAQQAYKYLREEVKTFQGKPIMARI 248 (684)
T ss_pred cceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc----eEEEeecchhHHHHHHHHHHHHHhhcCcchhhhh
Confidence 46788999999999999999999975 56788999876554 599999999999999987643 47777766554
Q ss_pred c
Q psy2618 81 A 81 (390)
Q Consensus 81 ~ 81 (390)
.
T Consensus 249 K 249 (684)
T KOG2591|consen 249 K 249 (684)
T ss_pred h
Confidence 4
No 189
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.33 E-value=0.032 Score=38.39 Aligned_cols=56 Identities=23% Similarity=0.408 Sum_probs=40.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 159 (390)
....+|+ .|.+|-..||.++|+.||.|.-.++ .| .-|||...+.+.|..++..++.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I~VsWi-~d-------TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQIYVSWI-ND-------TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCEEEEEE-CT-------TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcEEEEEE-cC-------CcEEEEeecHHHHHHHHHHhcc
Confidence 3444455 9999999999999999999854444 33 3599999999999999988763
No 190
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.23 E-value=0.021 Score=39.26 Aligned_cols=56 Identities=16% Similarity=0.262 Sum_probs=41.3
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNK 68 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~ 68 (390)
..||-=..|..=...||.++|+.||.|. |.-+.+. .|||...+.+.|..++..++.
T Consensus 9 dHVFhltFPkeWK~~DI~qlFspfG~I~-VsWi~dT----SAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHLTFPKEWKTSDIYQLFSPFGQIY-VSWINDT----SAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEEE--TT--HHHHHHHCCCCCCEE-EEEECTT----EEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEEeCchHhhhhhHHHHhccCCcEE-EEEEcCC----cEEEEeecHHHHHHHHHHhcc
Confidence 3344334898889999999999999975 5555554 699999999999999988764
No 191
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.18 E-value=0.023 Score=36.99 Aligned_cols=53 Identities=23% Similarity=0.319 Sum_probs=43.2
Q ss_pred eeEEcCCCCCCcHHHHHhhhcCC---CceeEEEEecCCCeEEEEecCHHHHHHHHHHh
Q psy2618 208 TVYCGGFGKDLNEELVSKVFSPF---GTIVDIRVFKEKGYAFVKFTTKETATHAIESI 262 (390)
Q Consensus 208 ~l~v~~l~~~~~~~~l~~~f~~~---g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l 262 (390)
.|+|.|++. ++.++|+.+|..| .....|..+.+. .|-|.|.+.+.|.+|+.+|
T Consensus 7 avhirGvd~-lsT~dI~~y~~~y~~~~~~~~IEWIdDt-ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 7 AVHIRGVDE-LSTDDIKAYFSEYFDEEGPFRIEWIDDT-SCNVVFKDEETAARALVAL 62 (62)
T ss_pred eEEEEcCCC-CCHHHHHHHHHHhcccCCCceEEEecCC-cEEEEECCHHHHHHHHHcC
Confidence 599999865 7778999999988 235677787664 5789999999999999864
No 192
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.17 E-value=0.031 Score=42.56 Aligned_cols=76 Identities=21% Similarity=0.387 Sum_probs=58.8
Q ss_pred CCCCCcceeEEcCCCCCC----cHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEe
Q psy2618 201 QSSPTNCTVYCGGFGKDL----NEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFW 276 (390)
Q Consensus 201 ~~~~~~~~l~v~~l~~~~----~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 276 (390)
...++..+|.|+=|..++ +...+...++.||.|.+|-.. .+..|.|.|.|..+|=+|+.+++.. .-|..+.++|
T Consensus 81 ~kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~c-GrqsavVvF~d~~SAC~Av~Af~s~-~pgtm~qCsW 158 (166)
T PF15023_consen 81 TKEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLC-GRQSAVVVFKDITSACKAVSAFQSR-APGTMFQCSW 158 (166)
T ss_pred CCCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeec-CCceEEEEehhhHHHHHHHHhhcCC-CCCceEEeec
Confidence 345667788888766553 334555667889999988765 5778999999999999999998874 6788888888
Q ss_pred cc
Q psy2618 277 GK 278 (390)
Q Consensus 277 ~~ 278 (390)
..
T Consensus 159 qq 160 (166)
T PF15023_consen 159 QQ 160 (166)
T ss_pred cc
Confidence 53
No 193
>KOG4285|consensus
Probab=96.01 E-value=0.024 Score=48.68 Aligned_cols=72 Identities=19% Similarity=0.189 Sum_probs=54.8
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccce-eeEeecCC
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKE-MKVNWASS 83 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~-l~v~~~~~ 83 (390)
..=|-|-++|+. .-.-|..+|+++|.|++...- .+..|-.|.|.+.-+|.+||.+ ||++|.|.. |-|..+.+
T Consensus 197 D~WVTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~---~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtD 269 (350)
T KOG4285|consen 197 DTWVTVFGFPPG-QVSIVLNLFSRCGEVVKHVTP---SNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTD 269 (350)
T ss_pred cceEEEeccCcc-chhHHHHHHHhhCeeeeeecC---CCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCC
Confidence 556777788775 445788999999999866553 3445999999999999999986 999888743 44554443
No 194
>KOG1924|consensus
Probab=95.91 E-value=0.034 Score=54.10 Aligned_cols=14 Identities=14% Similarity=0.074 Sum_probs=6.7
Q ss_pred EccHHHHHHHHHHh
Q psy2618 53 FVHHTVAATALAAM 66 (390)
Q Consensus 53 F~~~~~A~~a~~~l 66 (390)
-++..++.+|++++
T Consensus 206 ~k~~~eiIrClka~ 219 (1102)
T KOG1924|consen 206 IKNLQEIIRCLKAF 219 (1102)
T ss_pred HHHHHHHHHHHHHH
Confidence 33444555555543
No 195
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=95.88 E-value=0.34 Score=41.86 Aligned_cols=154 Identities=12% Similarity=0.233 Sum_probs=100.6
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC----------CCCCeEEEEEccHHHHHHH----HHHhcC--e
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP----------GNDPYAFLEFVHHTVAATA----LAAMNK--R 69 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~----------~~~g~afV~F~~~~~A~~a----~~~l~~--~ 69 (390)
-.|.|.+.||..+++--.+...|-+||+|++|.++.+. .......+.|-+.+.+... +++|+. +
T Consensus 14 rTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~ 93 (309)
T PF10567_consen 14 RTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKT 93 (309)
T ss_pred eeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHH
Confidence 45788899999999999999999999999999999776 1234889999999987654 333332 2
Q ss_pred eeccceeeEeecCCCCCCC---------------------CCCCCCceEEEEcCCCcccCHHHH-H---HHhCCCC----
Q psy2618 70 VFLEKEMKVNWASSPGNQP---------------------KQDTSNHYHIFVGDLSPEIETQTL-K---EAFAPFG---- 120 (390)
Q Consensus 70 ~~~g~~l~v~~~~~~~~~~---------------------~~~~~~~~~l~v~nl~~~~~~~~l-~---~~f~~~G---- 120 (390)
.+....|.+.+..-.-... -......|.|.|.=- ..++++++ . .++..-+
T Consensus 94 ~L~S~~L~lsFV~l~y~~~~~~~~~~~~~~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~~n~RY 172 (309)
T PF10567_consen 94 KLKSESLTLSFVSLNYQKKTDPNDEEADFSDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNSNNKRY 172 (309)
T ss_pred hcCCcceeEEEEEEeccccccccccccchhhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccCCCceE
Confidence 3566777777765211100 012233566666432 23323332 2 2222233
Q ss_pred CeeEEEEeeCCCC--CCCCcEEEEEecCHHHHHHHHHHhcCc
Q psy2618 121 EISNCRIVRDPQT--LKSKGYAFVSFVKKAEAENAITAMNGQ 160 (390)
Q Consensus 121 ~i~~~~~~~~~~~--g~~~g~afv~f~~~~~a~~a~~~l~~~ 160 (390)
.+++|.++..... .-++.||.++|-+...|.+.++.+...
T Consensus 173 VlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 173 VLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred EEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 2677777754332 236789999999999999999877743
No 196
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.79 E-value=0.033 Score=45.55 Aligned_cols=63 Identities=24% Similarity=0.407 Sum_probs=50.2
Q ss_pred cHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhc--CceecCeEEEEEecccCC
Q psy2618 219 NEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIH--NTDINGHTVKCFWGKESE 281 (390)
Q Consensus 219 ~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~~~ 281 (390)
..+.|+++|..++.+.....++.-+-..|.|.+.++|.+|...|+ +..+.|..+++.|+....
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~~~ 72 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQPTP 72 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----SS
T ss_pred hHHHHHHHHHhcCCceEEEEcCCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccccc
Confidence 457899999999999999999998889999999999999999999 899999999999985544
No 197
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=95.65 E-value=0.02 Score=40.29 Aligned_cols=69 Identities=12% Similarity=0.174 Sum_probs=47.3
Q ss_pred EEEEEccHHHHHHHHHHhcCe-eeccceeeEeecCCCCCCC----CCCCCCceEEEEcCCCcccCHHHHHHHhC
Q psy2618 49 AFLEFVHHTVAATALAAMNKR-VFLEKEMKVNWASSPGNQP----KQDTSNHYHIFVGDLSPEIETQTLKEAFA 117 (390)
Q Consensus 49 afV~F~~~~~A~~a~~~l~~~-~~~g~~l~v~~~~~~~~~~----~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 117 (390)
|.|+|.+.+-|++.++.-.-. .+.++.+.|....-..... ....-+.++|.|.|||...++++|++.++
T Consensus 1 AlITF~e~~VA~~i~~~~~~~v~l~~~~~~V~v~P~~~~~~~k~qv~~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKKKKHPVPLEDCCVRVKVSPVTLGHLQKFQVFSGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred CEEEeCcHHHHHHHHhCCEEEEEECCEEEEEEEEeEecCCceEEEEEEcccCCEEEEeCCCCCCChhhheeeEE
Confidence 689999999999999752221 2445666665543322211 11345678999999999999999988754
No 198
>KOG0804|consensus
Probab=95.59 E-value=0.079 Score=48.30 Aligned_cols=70 Identities=17% Similarity=0.208 Sum_probs=60.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccC-CceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIG-PVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G-~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
+.+++.|.|=.+|...+-.||..|+..+- .|.++++++++. ++=.+.|+|++.++|....+.+||..|..
T Consensus 71 ~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 71 ASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34488999999999999999999998663 588999999776 45589999999999999999999998764
No 199
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=95.49 E-value=0.037 Score=45.25 Aligned_cols=62 Identities=18% Similarity=0.139 Sum_probs=46.8
Q ss_pred ccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc--CeeeccceeeEeecCC
Q psy2618 19 VTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN--KRVFLEKEMKVNWASS 83 (390)
Q Consensus 19 ~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~--~~~~~g~~l~v~~~~~ 83 (390)
-..+.|+++|..++.+.++..++.-+ =..|.|.+.+.|.+|...|+ +..+.|+.+++.++..
T Consensus 7 ~~~~~l~~l~~~~~~~~~~~~L~sFr---Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 7 DNLAELEELFSTYDPPVQFSPLKSFR---RIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp --HHHHHHHHHTT-SS-EEEEETTTT---EEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred hhHHHHHHHHHhcCCceEEEEcCCCC---EEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 35679999999999999888876654 58999999999999999999 8999999999998844
No 200
>KOG2068|consensus
Probab=95.44 E-value=0.0065 Score=53.15 Aligned_cols=76 Identities=16% Similarity=0.292 Sum_probs=58.9
Q ss_pred CeEEEeCCChhccHH-HHH--HHhcccCCceEEEEeecCC----CC--CeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 8 TTLYVGNLDVSVTEE-LLC--ALFSQIGPVKGCKVIREPG----ND--PYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~-~l~--~~f~~~G~v~~v~~~~~~~----~~--g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.-+||-+|+.....+ .|+ +.|..||.|.+|.+.++.. .. --++|+|...++|..||...+|..+.|+.++.
T Consensus 78 nlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lka 157 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALKA 157 (327)
T ss_pred hhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhHH
Confidence 346777888665444 444 7899999999998877552 11 26899999999999999999999999998777
Q ss_pred eecCC
Q psy2618 79 NWASS 83 (390)
Q Consensus 79 ~~~~~ 83 (390)
.+...
T Consensus 158 ~~gtt 162 (327)
T KOG2068|consen 158 SLGTT 162 (327)
T ss_pred hhCCC
Confidence 76654
No 201
>KOG2068|consensus
Probab=95.02 E-value=0.0096 Score=52.14 Aligned_cols=82 Identities=17% Similarity=0.383 Sum_probs=62.9
Q ss_pred ceEEEEcCCCcccCHHHH---HHHhCCCCCeeEEEEeeCCC--CCC-CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 95 HYHIFVGDLSPEIETQTL---KEAFAPFGEISNCRIVRDPQ--TLK-SKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l---~~~f~~~G~i~~~~~~~~~~--~g~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.+.++|-+|+....++++ .+.|.+||.|..|.+.++.. .+. ...-++|+|...++|..|+...++..++|+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~lk 156 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRALK 156 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhhH
Confidence 466888899977766655 34688889999998877652 111 112389999999999999999999999999988
Q ss_pred EeecCCCC
Q psy2618 169 TNWSTRKP 176 (390)
Q Consensus 169 v~~~~~~~ 176 (390)
..+...+-
T Consensus 157 a~~gttky 164 (327)
T KOG2068|consen 157 ASLGTTKY 164 (327)
T ss_pred HhhCCCcc
Confidence 88776553
No 202
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=94.90 E-value=2 Score=37.34 Aligned_cols=174 Identities=11% Similarity=0.196 Sum_probs=100.4
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCC-------CCCCCcEEEEEecCHHHHHHH----HHHhc
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQ-------TLKSKGYAFVSFVKKAEAENA----ITAMN 158 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~-------~g~~~g~afv~f~~~~~a~~a----~~~l~ 158 (390)
.++-..|.|...|+..+++--.+...|-+||+|++|+++.+.. .-.......+.|-+.+.+..- ++.|.
T Consensus 10 dD~YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLs 89 (309)
T PF10567_consen 10 DDEYRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLS 89 (309)
T ss_pred CccceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHH
Confidence 3455578899999999999999999999999999999997751 112345688899998877653 33333
Q ss_pred --CceeCCeeEEEeecCCCCCCCcccccccCCCCcccccccc--ccCCCCCcceeEEcCCCCCCcHHHHH-h---hhcCC
Q psy2618 159 --GQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV--YNQSSPTNCTVYCGGFGKDLNEELVS-K---VFSPF 230 (390)
Q Consensus 159 --~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~v~~l~~~~~~~~l~-~---~f~~~ 230 (390)
+..+....|.+.+..-+-............- ........ .......++.|.|.-- ..+..+++. + ++..-
T Consensus 90 EfK~~L~S~~L~lsFV~l~y~~~~~~~~~~~~~-~~~~~~~L~~~i~~~gATRSl~IeF~-~~~~~~dl~~~kL~fL~~~ 167 (309)
T PF10567_consen 90 EFKTKLKSESLTLSFVSLNYQKKTDPNDEEADF-SDYLVASLQYNIINRGATRSLAIEFK-DPVDKDDLIEKKLPFLKNS 167 (309)
T ss_pred HHHHhcCCcceeEEEEEEeccccccccccccch-hhHHhhhhhheeecCCcceEEEEEec-CccchhHHHHHhhhhhccC
Confidence 2456677777776653211111000000000 00000000 0011122334555332 334333332 2 22222
Q ss_pred C----ceeEEEEecC--------CCeEEEEecCHHHHHHHHHHhcCc
Q psy2618 231 G----TIVDIRVFKE--------KGYAFVKFTTKETATHAIESIHNT 265 (390)
Q Consensus 231 g----~v~~~~~~~~--------~g~~fv~f~~~~~a~~a~~~l~~~ 265 (390)
+ .+++|.++.. +.||.++|-+..-|...+.-+...
T Consensus 168 ~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYlk~~ 214 (309)
T PF10567_consen 168 NNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYLKSN 214 (309)
T ss_pred CCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHHHhc
Confidence 3 2566777632 679999999999999999877643
No 203
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=94.79 E-value=0.46 Score=35.26 Aligned_cols=68 Identities=21% Similarity=0.222 Sum_probs=48.9
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCC-eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGE-ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
....+.+...|..++.++|..+.+.+-. |..++++++.. .++=-+.+.|.+.++|.+-.+.+||+.+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~--pnrymVLikF~~~~~Ad~Fy~~fNGk~Fn 80 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGT--PNRYMVLIKFRDQESADEFYEEFNGKPFN 80 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCC--CceEEEEEEECCHHHHHHHHHHhCCCccC
Confidence 3344445555555666677767666655 88888888733 24445889999999999999999998774
No 204
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=94.70 E-value=0.071 Score=43.50 Aligned_cols=82 Identities=9% Similarity=0.160 Sum_probs=49.9
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCC-CCCe---eEEEEeeCCCC-CC-CCcEEEEEecCHHHHHHHHHHhcCceeCC--
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAP-FGEI---SNCRIVRDPQT-LK-SKGYAFVSFVKKAEAENAITAMNGQWLGS-- 164 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~i---~~~~~~~~~~~-g~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g-- 164 (390)
....+|.|++||+.+|++++.+.+.. ++.- ..+.-...... .. .-..|||.|.+.+++..-...++|+.+.+
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~k 84 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVDSK 84 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-TT
T ss_pred ccCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEECCC
Confidence 34568999999999999999998887 5554 22221122222 11 23459999999999999999999976632
Q ss_pred ---eeEEEeecCC
Q psy2618 165 ---RSIRTNWSTR 174 (390)
Q Consensus 165 ---~~i~v~~~~~ 174 (390)
....|+++.-
T Consensus 85 g~~~~~~VE~Apy 97 (176)
T PF03467_consen 85 GNEYPAVVEFAPY 97 (176)
T ss_dssp S-EEEEEEEE-SS
T ss_pred CCCcceeEEEcch
Confidence 2345555543
No 205
>KOG0804|consensus
Probab=94.59 E-value=0.32 Score=44.51 Aligned_cols=74 Identities=23% Similarity=0.334 Sum_probs=60.9
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCC-eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCC
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE-ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS 164 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 164 (390)
......++.|+|-.+|..++.-||..|...+-. |.+++++||... .+=-..|.|.+.++|..-.+.+||+.+..
T Consensus 68 ~~~~~~~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~p--nrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 68 LKNASSSTMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMP--NRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred cccCCCCcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCC--ceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 334444889999999999999999999988765 999999996332 33448999999999999999999998754
No 206
>KOG4574|consensus
Probab=94.21 E-value=0.029 Score=54.95 Aligned_cols=70 Identities=24% Similarity=0.307 Sum_probs=58.7
Q ss_pred EEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeee--ccceeeEeecCC
Q psy2618 11 YVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVF--LEKEMKVNWASS 83 (390)
Q Consensus 11 ~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~--~g~~l~v~~~~~ 83 (390)
.+-|.+-+.+-..|.-+|+.||.|.+.|..++-. .|.|+|.+.+.|..|+++|+|+.+ -|-+.+|.+++.
T Consensus 302 ~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~ 373 (1007)
T KOG4574|consen 302 SLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---MALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKT 373 (1007)
T ss_pred hhhcccccchHHHHHHHHHhhcchhhheeccccc---chhhhhHHHHHHHHhhhhhcCCcccccCCceeEEeccc
Confidence 3444555677778999999999999999987765 799999999999999999999975 477888888864
No 207
>KOG4574|consensus
Probab=93.91 E-value=0.043 Score=53.84 Aligned_cols=75 Identities=15% Similarity=0.309 Sum_probs=64.7
Q ss_pred eeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCcee--cCeEEEEEecccCCC
Q psy2618 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDI--NGHTVKCFWGKESEN 282 (390)
Q Consensus 208 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~~~~ 282 (390)
+..+.|..-..+-..|..+|+.||.|.++..+++-..+.|.|.+.+.|..|+++++|+++ -|-..+|.+++....
T Consensus 300 ~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak~~~~ 376 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAKTLPM 376 (1007)
T ss_pred hhhhhcccccchHHHHHHHHHhhcchhhheecccccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecccccc
Confidence 344555566677889999999999999999999999999999999999999999999975 678899999887653
No 208
>KOG2135|consensus
Probab=93.86 E-value=0.063 Score=49.18 Aligned_cols=75 Identities=24% Similarity=0.248 Sum_probs=60.5
Q ss_pred eeEEcCCCCC-CcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCC
Q psy2618 208 TVYCGGFGKD-LNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283 (390)
Q Consensus 208 ~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 283 (390)
.|-+...+.. -+.++|...|.+||.|..|.+.-..-.|.|+|.+..+|-+|.. .++..|+++.|+|.|-.+....
T Consensus 374 ~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnps~~t 449 (526)
T KOG2135|consen 374 PLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNPSPVT 449 (526)
T ss_pred hhhhhccCCCCchHhhhhhhhhhcCccccccccCchhhheeeeeccccccchhc-cccceecCceeEEEEecCCccc
Confidence 3444444444 3568999999999999999997776789999999999988876 6888999999999998886533
No 209
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.84 E-value=0.38 Score=31.88 Aligned_cols=55 Identities=15% Similarity=0.175 Sum_probs=43.5
Q ss_pred hccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 18 SVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 18 ~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.++-++++..++.|+- . ++..+++ | -||-|.|.++|++|.+..+++.+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~-~--~I~~d~t--G-fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW-D--RIRDDRT--G-FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCc-c--eEEecCC--E-EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 4788899999999984 3 3344443 3 499999999999999999999888776654
No 210
>KOG2135|consensus
Probab=93.81 E-value=0.03 Score=51.21 Aligned_cols=76 Identities=20% Similarity=0.215 Sum_probs=60.5
Q ss_pred CCCCeEEEeCCChh-ccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 5 SQPTTLYVGNLDVS-VTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 5 ~~~~~l~v~nLp~~-~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.+.+.|-+.-+|.. -+.++|...|.+||+|..|.+--. .--|.|+|++..+|-+|.. ..+..|+++.|+|.|..+
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~---~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whnp 445 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYS---SLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHNP 445 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCc---hhhheeeeeccccccchhc-cccceecCceeEEEEecC
Confidence 34566666666655 466799999999999999987543 2369999999999977774 589999999999999987
Q ss_pred C
Q psy2618 84 P 84 (390)
Q Consensus 84 ~ 84 (390)
.
T Consensus 446 s 446 (526)
T KOG2135|consen 446 S 446 (526)
T ss_pred C
Confidence 3
No 211
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.80 E-value=0.15 Score=34.99 Aligned_cols=66 Identities=20% Similarity=0.341 Sum_probs=37.9
Q ss_pred eEEEeCCC--hhccHHHHHHHhcccCC-----ceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 9 TLYVGNLD--VSVTEELLCALFSQIGP-----VKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 9 ~l~v~nLp--~~~~~~~l~~~f~~~G~-----v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
++|| |+- ..++..+|..++...+. |-.|.+.. .|+||+-... .|+.+++.|++..+.|++++|+.+
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~-----~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFD-----NFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-S-----S-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEee-----eEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 4555 443 34788899988877654 34565533 2899998765 889999999999999999999864
No 212
>KOG4285|consensus
Probab=93.76 E-value=0.2 Score=43.31 Aligned_cols=73 Identities=18% Similarity=0.257 Sum_probs=56.5
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCe-EEEEEecccCC
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGH-TVKCFWGKESE 281 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~~~~~~ 281 (390)
.=|-|-+++..-. ..|..+|+++|.|++....++..+-.|.|.+.-+|+||+.. +|+.|+|. .|-|+-+.++.
T Consensus 198 ~WVTVfGFppg~~-s~vL~~F~~cG~Vvkhv~~~ngNwMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDks 271 (350)
T KOG4285|consen 198 TWVTVFGFPPGQV-SIVLNLFSRCGEVVKHVTPSNGNWMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKS 271 (350)
T ss_pred ceEEEeccCccch-hHHHHHHHhhCeeeeeecCCCCceEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHH
Confidence 3355667766533 56778899999999998887778999999999999999995 88888774 56676655544
No 213
>KOG1924|consensus
Probab=93.27 E-value=0.39 Score=47.15 Aligned_cols=14 Identities=21% Similarity=0.491 Sum_probs=7.7
Q ss_pred ccHHHHHHHhcccC
Q psy2618 19 VTEELLCALFSQIG 32 (390)
Q Consensus 19 ~~~~~l~~~f~~~G 32 (390)
++.+++-++|...|
T Consensus 83 ls~~e~~~~F~~~~ 96 (1102)
T KOG1924|consen 83 LSSNEVLELFELMG 96 (1102)
T ss_pred ccHHHHHHHHHHHh
Confidence 45555555665544
No 214
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.24 E-value=0.58 Score=31.03 Aligned_cols=55 Identities=11% Similarity=0.105 Sum_probs=43.9
Q ss_pred CCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEE
Q psy2618 217 DLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKC 274 (390)
Q Consensus 217 ~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 274 (390)
.++.++++..+..|+-. +|..++.--||.|.+.++|+++....++..+.+..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~---~I~~d~tGfYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD---RIRDDRTGFYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc---eEEecCCEEEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 36789999999998843 34445555599999999999999999999887776654
No 215
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=92.91 E-value=0.28 Score=34.57 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=45.8
Q ss_pred EEEEecCHHHHHHHHHHhcCc--eeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCC
Q psy2618 140 AFVSFVKKAEAENAITAMNGQ--WLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217 (390)
Q Consensus 140 afv~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~ 217 (390)
|.|+|.+..-|++.++. ..+ .+++..+.|.-..-......... .....+.++|.|.|||..
T Consensus 1 AlITF~e~~VA~~i~~~-~~~~v~l~~~~~~V~v~P~~~~~~~k~q----------------v~~~vs~rtVlvsgip~~ 63 (88)
T PF07292_consen 1 ALITFEEEGVAQRILKK-KKHPVPLEDCCVRVKVSPVTLGHLQKFQ----------------VFSGVSKRTVLVSGIPDV 63 (88)
T ss_pred CEEEeCcHHHHHHHHhC-CEEEEEECCEEEEEEEEeEecCCceEEE----------------EEEcccCCEEEEeCCCCC
Confidence 68999999999999864 323 45666666654322211111111 111234457999999999
Q ss_pred CcHHHHHhhhc
Q psy2618 218 LNEELVSKVFS 228 (390)
Q Consensus 218 ~~~~~l~~~f~ 228 (390)
.++++|++.++
T Consensus 64 l~ee~l~D~Le 74 (88)
T PF07292_consen 64 LDEEELRDKLE 74 (88)
T ss_pred CChhhheeeEE
Confidence 99999998763
No 216
>KOG2318|consensus
Probab=91.22 E-value=1.1 Score=42.54 Aligned_cols=128 Identities=16% Similarity=0.165 Sum_probs=77.2
Q ss_pred CCCCCeEEEeCCChh-ccHHHHHHHhccc----CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 4 ESQPTTLYVGNLDVS-VTEELLCALFSQI----GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~-~~~~~l~~~f~~~----G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
....++|-|.|+.|+ +.-.||.-+|+.| |.|++|.|.... | ..++|....+.|-.+.+
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSe---------F--------GkeRM~eEeV~GP~~el 233 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSE---------F--------GKERMKEEEVHGPPKEL 233 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhh---------h--------hHHHhhhhcccCChhhh
Confidence 457899999999988 7788999999877 689999885432 2 23344444555554444
Q ss_pred eecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc
Q psy2618 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 158 (390)
-.-........ ......+.-.+..+..|+. ..+ .-=||.|+|.+.+.|....+.++
T Consensus 234 ~~~~e~~~~s~-------------sD~ee~~~~~~~kLR~Yq~-~rL----------kYYyAVvecDsi~tA~~vYe~CD 289 (650)
T KOG2318|consen 234 FKPVEEYKESE-------------SDDEEEEDVDREKLRQYQL-NRL----------KYYYAVVECDSIETAKAVYEECD 289 (650)
T ss_pred ccccccCcccc-------------cchhhhhhHHHHHHHHHHh-hhh----------eeEEEEEEecCchHHHHHHHhcC
Confidence 32211111000 0111111223444444432 111 12269999999999999999999
Q ss_pred CceeCC--eeEEEeec
Q psy2618 159 GQWLGS--RSIRTNWS 172 (390)
Q Consensus 159 ~~~~~g--~~i~v~~~ 172 (390)
|..+.. ..|.+.|.
T Consensus 290 G~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 290 GIEFESSANKLDLRFI 305 (650)
T ss_pred cceeccccceeeeeec
Confidence 998864 45555554
No 217
>KOG2253|consensus
Probab=90.98 E-value=0.14 Score=49.08 Aligned_cols=73 Identities=15% Similarity=0.220 Sum_probs=63.3
Q ss_pred CCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEec
Q psy2618 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG 277 (390)
Q Consensus 202 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 277 (390)
..++..++||+|+...+..+-++.++...|-|..+.... |||+.|..+....+|+..++...++|..+.+.-.
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~---fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d 108 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK---FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVD 108 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh---hcccchhhHHHHHHHHHHhcccCCCcchhhccch
Confidence 345566899999999999999999999999988776655 9999999999999999999999898888777553
No 218
>KOG2253|consensus
Probab=89.99 E-value=0.2 Score=48.04 Aligned_cols=107 Identities=17% Similarity=0.229 Sum_probs=77.5
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
.+.-+|||+||...++.+-++.....+|-|.+++... |+|++|.....+.+|+..+....+.+..+.+......
T Consensus 38 ~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~~~d~q~ 111 (668)
T KOG2253|consen 38 PPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------FGFCEFLKHIGDLRASRLLTELNIDDQKLIENVDEQT 111 (668)
T ss_pred CCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------hcccchhhHHHHHHHHHHhcccCCCcchhhccchhhh
Confidence 4678999999999999999999999999998887654 8999999999999999988888888877766653111
Q ss_pred CC-------------CCCCCCCCceEEEEcCCCcccCHHHHHHHhC
Q psy2618 85 GN-------------QPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117 (390)
Q Consensus 85 ~~-------------~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 117 (390)
.. +.....+..+..+|.+++....+......+.
T Consensus 112 ~~n~~k~~~~~~~~~~~f~p~~srr~e~i~~k~~~l~~~~~~~~~~ 157 (668)
T KOG2253|consen 112 IENADKEKSIANKESHKFVPSSSRRQESIQNKPLSLDEQIHKKSLQ 157 (668)
T ss_pred hcCccccccchhhhhcccCCchhHHHHHhhccccchhHHHHHHHHh
Confidence 00 0111122245566777776665555544443
No 219
>KOG4019|consensus
Probab=88.91 E-value=0.42 Score=38.18 Aligned_cols=75 Identities=24% Similarity=0.317 Sum_probs=56.1
Q ss_pred CCCeEEEeCCChhcc-----HHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccc-eeeEe
Q psy2618 6 QPTTLYVGNLDVSVT-----EELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEK-EMKVN 79 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~-----~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~-~l~v~ 79 (390)
-.+++.+.+|+..+- ......+|..|.+.....+++..+ ..-|.|.+.+.|..|...+++..|.|+ .+++-
T Consensus 9 lp~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfr---rvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~y 85 (193)
T KOG4019|consen 9 LPTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFR---RVRINFSNPEAAADARIKLHSTSFNGKNELKLY 85 (193)
T ss_pred ccceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhc---eeEEeccChhHHHHHHHHhhhcccCCCceEEEE
Confidence 345688888876532 224557777777666555555443 788999999999999999999999998 88888
Q ss_pred ecCC
Q psy2618 80 WASS 83 (390)
Q Consensus 80 ~~~~ 83 (390)
++..
T Consensus 86 faQ~ 89 (193)
T KOG4019|consen 86 FAQP 89 (193)
T ss_pred EccC
Confidence 8765
No 220
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=87.18 E-value=2.6 Score=28.73 Aligned_cols=58 Identities=21% Similarity=0.367 Sum_probs=34.7
Q ss_pred CCcHHHHHhhhcCCC-----ceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEec
Q psy2618 217 DLNEELVSKVFSPFG-----TIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG 277 (390)
Q Consensus 217 ~~~~~~l~~~f~~~g-----~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 277 (390)
.++..+|..++...+ .|-++.+. ..+.||+-.. +.|.++++.|++..+.|+.+.|+.|
T Consensus 12 g~~~~~iv~~i~~~~gi~~~~IG~I~I~--~~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 12 GLTPRDIVGAICNEAGIPGRDIGRIDIF--DNFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp T--HHHHHHHHHTCTTB-GGGEEEEEE---SS-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred CCCHHHHHHHHHhccCCCHHhEEEEEEe--eeEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 478888888887764 35566664 4578888754 5788999999999999999999764
No 221
>KOG4019|consensus
Probab=85.31 E-value=1.1 Score=35.94 Aligned_cols=76 Identities=16% Similarity=0.350 Sum_probs=58.8
Q ss_pred eEEcCCCCCC-----cHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCe-EEEEEecccCCC
Q psy2618 209 VYCGGFGKDL-----NEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGH-TVKCFWGKESEN 282 (390)
Q Consensus 209 l~v~~l~~~~-----~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~-~i~v~~~~~~~~ 282 (390)
+++.++...+ .......+|.+|.+.....+++..+..-|.|.+.+.|..|...++...+.|+ .+..-|+.+...
T Consensus 13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~~~~ 92 (193)
T KOG4019|consen 13 IIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQPGHP 92 (193)
T ss_pred eeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccCCCc
Confidence 5566666543 2334566777888888788888888889999999999999999999999998 888888776554
Q ss_pred CC
Q psy2618 283 NS 284 (390)
Q Consensus 283 ~~ 284 (390)
..
T Consensus 93 ~~ 94 (193)
T KOG4019|consen 93 ES 94 (193)
T ss_pred cc
Confidence 33
No 222
>KOG2236|consensus
Probab=85.14 E-value=2.5 Score=39.16 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=4.5
Q ss_pred EEEecCHH
Q psy2618 246 FVKFTTKE 253 (390)
Q Consensus 246 fv~f~~~~ 253 (390)
.++|.+.|
T Consensus 318 e~dfSDDE 325 (483)
T KOG2236|consen 318 EQDFSDDE 325 (483)
T ss_pred hhccchHH
Confidence 46776543
No 223
>KOG2318|consensus
Probab=85.01 E-value=4.5 Score=38.66 Aligned_cols=78 Identities=15% Similarity=0.274 Sum_probs=62.8
Q ss_pred CCCcceeEEcCCCCC-CcHHHHHhhhcCC----CceeEEEEecC--------------C---------------------
Q psy2618 203 SPTNCTVYCGGFGKD-LNEELVSKVFSPF----GTIVDIRVFKE--------------K--------------------- 242 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~v~~~~~~~~--------------~--------------------- 242 (390)
...+++|-|-||.+. +..+||..+|..| |.|++|.|.+. .
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 456788999999996 8899999988765 58999988843 0
Q ss_pred ------------------CeEEEEecCHHHHHHHHHHhcCceec--CeEEEEEecccC
Q psy2618 243 ------------------GYAFVKFTTKETATHAIESIHNTDIN--GHTVKCFWGKES 280 (390)
Q Consensus 243 ------------------g~~fv~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~ 280 (390)
=||.|+|.+++.|......++|..+. +..|-+.|-...
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 26889999999999999999999884 566777665443
No 224
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=83.74 E-value=1.7 Score=34.45 Aligned_cols=108 Identities=13% Similarity=0.019 Sum_probs=69.5
Q ss_pred hccHHHHHHHhcc-cCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCCCCCCC-CCCCc
Q psy2618 18 SVTEELLCALFSQ-IGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQPKQ-DTSNH 95 (390)
Q Consensus 18 ~~~~~~l~~~f~~-~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~-~~~~~ 95 (390)
..+-..|...+.. ++....+.+..- ..++..++|.+.+++.++++. ....+.+..+.+..-.+....... -....
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l--~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~~~~~ 104 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL--GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKFEHIP 104 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe--CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccceeccc
Confidence 3556666665544 233223333322 345899999999999999973 555567777777766532221111 11234
Q ss_pred eEEEEcCCCcc-cCHHHHHHHhCCCCCeeEEEEe
Q psy2618 96 YHIFVGDLSPE-IETQTLKEAFAPFGEISNCRIV 128 (390)
Q Consensus 96 ~~l~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~ 128 (390)
.-|.|.|||.. ++++-++.+.+.+|.+..+...
T Consensus 105 vWVri~glP~~~~~~~~~~~i~~~iG~~i~vD~~ 138 (153)
T PF14111_consen 105 VWVRIYGLPLHLWSEEILKAIGSKIGEPIEVDEN 138 (153)
T ss_pred hhhhhccCCHHHhhhHHHHHHHHhcCCeEEEEcC
Confidence 45778999965 7888899999999998777654
No 225
>KOG2295|consensus
Probab=81.59 E-value=0.27 Score=46.11 Aligned_cols=72 Identities=14% Similarity=0.050 Sum_probs=56.9
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
..|+|+++|++++++.++|..+|..+-.+..+-+..... -..+.+|+|+-.-....|+.+||+..+....+.
T Consensus 230 ke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~s 304 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFLS 304 (648)
T ss_pred HHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccccccc
Confidence 457899999999999999999999997777665544332 224889999998888889999998876655443
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=80.43 E-value=2.6 Score=31.66 Aligned_cols=59 Identities=17% Similarity=0.215 Sum_probs=32.5
Q ss_pred eEEEeCCChhc---------cHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcC
Q psy2618 9 TLYVGNLDVSV---------TEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNK 68 (390)
Q Consensus 9 ~l~v~nLp~~~---------~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~ 68 (390)
++.|-|++... +.++|++.|+.|.++. ++...+.. +.+++.|+|.+.-.--+-..+|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~l~~ 78 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHTGFAIVEFNKDWSGFKNAMRLEK 78 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEEEEEEEE--SSHHHHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCcEEEEEEECCChHHHHHHHHHHH
Confidence 46677886543 5679999999999864 66666554 678999999886554333333443
No 227
>KOG4410|consensus
Probab=77.49 E-value=3.5 Score=35.57 Aligned_cols=51 Identities=16% Similarity=0.107 Sum_probs=39.3
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHH
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTV 58 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~ 58 (390)
..+-|+++|||.++.-.||+..+++.+.+- ..+.. +.+.+-||+.|.|...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~~p-m~isw-kg~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKRECTP-MSISW-KGHFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCCCc-eeEee-ecCCcceeEecCCccC
Confidence 356699999999999999999999887542 33333 3457789999987654
No 228
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=77.46 E-value=7.4 Score=27.26 Aligned_cols=57 Identities=11% Similarity=0.117 Sum_probs=43.2
Q ss_pred EEEeCCChhccHHHHHHHhccc-C-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh
Q psy2618 10 LYVGNLDVSVTEELLCALFSQI-G-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM 66 (390)
Q Consensus 10 l~v~nLp~~~~~~~l~~~f~~~-G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l 66 (390)
-+.=.++..++..+|++.++.+ | .|.+|....-+....-|||++...+.|.+...++
T Consensus 23 ~y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 23 KLTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHHhh
Confidence 3444567789999999888874 4 5777777666555568999999999999887654
No 229
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=75.54 E-value=10 Score=26.11 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=43.8
Q ss_pred eEEEeCCChhccHHHHHHHhccc-C-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh
Q psy2618 9 TLYVGNLDVSVTEELLCALFSQI-G-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM 66 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~l~~~f~~~-G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l 66 (390)
.-++-.++..++..+|++.++.. | +|.+|....-+.+-.-|||++...+.|.+...++
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 34555678899999999888874 4 5677776665555568999999999998876653
No 230
>KOG1295|consensus
Probab=74.45 E-value=5 Score=36.35 Aligned_cols=72 Identities=15% Similarity=0.147 Sum_probs=52.8
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCC-ceEEEEeecCC-----CCCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIREPG-----NDPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~-v~~v~~~~~~~-----~~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
.+..-.+.|.|++||+..++.+|.+.+..+-. |.-..+.+... -.+.|||.|.+.++.....+.++|.++..
T Consensus 2 ~~~~~~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 2 KKKEAKVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred cccccceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 34556789999999999999999998887643 22222322111 13589999999999999999899987543
No 231
>KOG4410|consensus
Probab=73.10 E-value=9.5 Score=33.00 Aligned_cols=51 Identities=10% Similarity=0.148 Sum_probs=41.2
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCc-eeEEEEecCCCeEEEEecCHH
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGT-IVDIRVFKEKGYAFVKFTTKE 253 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~-v~~~~~~~~~g~~fv~f~~~~ 253 (390)
....+.|+++||+.++...||+..+...+- -.++.+.-.++.||+.|.+..
T Consensus 327 a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~~ 378 (396)
T KOG4410|consen 327 AGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNRK 378 (396)
T ss_pred CccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCcc
Confidence 334567999999999999999999988764 366777777899999997754
No 232
>KOG2199|consensus
Probab=72.43 E-value=5.2 Score=36.40 Aligned_cols=9 Identities=22% Similarity=0.427 Sum_probs=4.5
Q ss_pred CHHHHHHHH
Q psy2618 146 KKAEAENAI 154 (390)
Q Consensus 146 ~~~~a~~a~ 154 (390)
+.|+-.+||
T Consensus 165 EeEdiaKAi 173 (462)
T KOG2199|consen 165 EEEDIAKAI 173 (462)
T ss_pred cHHHHHHHH
Confidence 444455555
No 233
>KOG4213|consensus
Probab=68.32 E-value=8.3 Score=30.98 Aligned_cols=54 Identities=17% Similarity=0.023 Sum_probs=36.1
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC----CCCeEEEEEccHHHHHHHHHH
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG----NDPYAFLEFVHHTVAATALAA 65 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~----~~g~afV~F~~~~~A~~a~~~ 65 (390)
++++.+ +.+...++|.++-+ |.+..|.+..-.. -+|-.||+|.+.++|..+++.
T Consensus 112 r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 112 RTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred hhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 455555 33334445555555 6788777653322 368999999999999998875
No 234
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=66.94 E-value=4.8 Score=31.79 Aligned_cols=86 Identities=8% Similarity=0.030 Sum_probs=56.7
Q ss_pred CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCC
Q psy2618 136 SKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215 (390)
Q Consensus 136 ~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~ 215 (390)
..++..+.|.+.+++.++++. ....+.+..+.+..-.+......... .....=|.|.|||
T Consensus 54 ~~~~fl~~F~~~~d~~~vl~~-~p~~~~~~~~~l~~W~~~~~~~~~~~-------------------~~~~vWVri~glP 113 (153)
T PF14111_consen 54 GDNLFLFQFESEEDRQRVLKG-GPWNFNGHFLILQRWSPDFNPSEVKF-------------------EHIPVWVRIYGLP 113 (153)
T ss_pred CCCeEEEEEEeccceeEEEec-ccccccccchhhhhhcccccccccce-------------------eccchhhhhccCC
Confidence 457899999999999999863 44566676666665442211111000 0001125677999
Q ss_pred CC-CcHHHHHhhhcCCCceeEEEEecC
Q psy2618 216 KD-LNEELVSKVFSPFGTIVDIRVFKE 241 (390)
Q Consensus 216 ~~-~~~~~l~~~f~~~g~v~~~~~~~~ 241 (390)
.. .+++.|+.+.+..|.+.++.....
T Consensus 114 ~~~~~~~~~~~i~~~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 114 LHLWSEEILKAIGSKIGEPIEVDENTL 140 (153)
T ss_pred HHHhhhHHHHHHHHhcCCeEEEEcCCC
Confidence 87 678888999999999998877644
No 235
>KOG4483|consensus
Probab=66.93 E-value=13 Score=33.82 Aligned_cols=60 Identities=23% Similarity=0.216 Sum_probs=46.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHH
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAA 65 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~ 65 (390)
+.+-.+.|-|-|+|....-+||...|+.|+. ..++|..-. ...||--|.+...|..||..
T Consensus 387 e~dlpHVlEIydfp~efkteDll~~f~~yq~-kgfdIkWvD--dthalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 387 ESDLPHVLEIYDFPDEFKTEDLLKAFETYQN-KGFDIKWVD--DTHALAVFSSVNRAAEALTL 446 (528)
T ss_pred cccccceeEeccCchhhccHHHHHHHHHhhc-CCceeEEee--cceeEEeecchHHHHHHhhc
Confidence 3445678999999999999999999999975 334444322 12699999999999999964
No 236
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=61.59 E-value=15 Score=33.30 Aligned_cols=56 Identities=23% Similarity=0.278 Sum_probs=37.9
Q ss_pred EEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhC
Q psy2618 49 AFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117 (390)
Q Consensus 49 afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 117 (390)
|||+|++..+|..|++.+... ..+.+.+..+.++ +.|.=.||.....+..++.++.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~--~~~~~~v~~APeP-----------~DI~W~NL~~~~~~r~~R~~~~ 56 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSK--RPNSWRVSPAPEP-----------DDIIWENLSISSKQRFLRRIIV 56 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcC--CCCCceEeeCCCc-----------ccccccccCCChHHHHHHHHHH
Confidence 799999999999999854443 2355666666543 3366677766666666665543
No 237
>KOG4213|consensus
Probab=60.79 E-value=17 Score=29.26 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=38.1
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCC-CCCCcEEEEEecCHHHHHHHHHH
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQT-LKSKGYAFVSFVKKAEAENAITA 156 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~a~~~ 156 (390)
.++++.. +.+..-++|..+-+ |.+..+...+.... -..+|-.||+|.+.+.|...++.
T Consensus 111 ~r~v~~K--~td~ql~~l~qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~~ 169 (205)
T KOG4213|consen 111 ERTVYKK--ITDDQLDDLNQWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDDT 169 (205)
T ss_pred Hhhhhcc--CCHHHHHHHHHHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhhh
Confidence 5667666 33334445555555 77888766544221 13578899999999999887764
No 238
>PRK09631 DNA topoisomerase IV subunit A; Provisional
Probab=59.14 E-value=45 Score=33.27 Aligned_cols=94 Identities=12% Similarity=0.144 Sum_probs=56.7
Q ss_pred CCCeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecCCCCCe-EEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREPGNDPY-AFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~~~~g~-afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+.++|.|+-||..++.+.|.+.+... |.+. |.-++|.+.++. --|+++....++..++.|-... .+...++
T Consensus 219 ~~~~ivItEiP~~~~~~~li~~i~~~~~~~ki~-I~~i~D~s~~~v~i~i~l~~~~~~~~~~~~Lyk~t----~lq~s~~ 293 (635)
T PRK09631 219 DEKTIVIREIPFGTTTESLIASIEKAARKGKIK-ISSINDYTAENVEIEIKLPRGVYASEVIEALYAYT----DCEVSIS 293 (635)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHHcCCCc-cceeEeCCCCcEEEEEEECCCCCHHHHHHHHHHhc----CceeEee
Confidence 35789999999999999888775533 5554 555556555553 3456666667776666544332 2222222
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHh
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF 116 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 116 (390)
. +..+.+.+.|...+-.+|.+.|
T Consensus 294 ~------------n~~~i~~~~p~~~~l~~il~~~ 316 (635)
T PRK09631 294 V------------NLLVIKDRYPVIYTVTDIIKFH 316 (635)
T ss_pred e------------eEEEEECCcCcCCCHHHHHHHH
Confidence 1 2445556677666666655554
No 239
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=55.55 E-value=1.2e+02 Score=30.12 Aligned_cols=103 Identities=11% Similarity=0.188 Sum_probs=64.9
Q ss_pred CCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc--Cce------eCCeeEEEeecCC
Q psy2618 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN--GQW------LGSRSIRTNWSTR 174 (390)
Q Consensus 103 l~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~--~~~------~~g~~i~v~~~~~ 174 (390)
.++..--++|.+.|..-+.+.++.+. ..||-++......-+....+.+. +.. -.++++.|+++++
T Consensus 54 ~~P~eiA~~i~~~l~~~~~~~~veia-------GpgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSa 126 (577)
T COG0018 54 KNPREIAEEIAEKLDTDEIIEKVEIA-------GPGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSA 126 (577)
T ss_pred CCHHHHHHHHHHhccccCcEeEEEEc-------CCCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCC
Confidence 33444456677777766667777663 23444444443333333333333 121 2468899998876
Q ss_pred CCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCC-ceeEEEEecC
Q psy2618 175 KPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIRVFKE 241 (390)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~~ 241 (390)
++ ...++||++-..+-=+.|..+++..| .|+....+.|
T Consensus 127 Np-----------------------------tkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 127 NP-----------------------------TGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred CC-----------------------------CCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 53 22388999988888888999998888 6777777766
No 240
>KOG4008|consensus
Probab=55.26 E-value=10 Score=31.99 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=31.2
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEE
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGC 37 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v 37 (390)
+.+..+.+||+-|||..++++.|.++.+..|-+..+
T Consensus 35 s~~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~ 70 (261)
T KOG4008|consen 35 SNSNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQEL 70 (261)
T ss_pred cccccccceeeecccccccHHHHHHHHHHhhhhhhe
Confidence 356778999999999999999999999999966544
No 241
>KOG0921|consensus
Probab=54.43 E-value=57 Score=33.80 Aligned_cols=14 Identities=14% Similarity=0.116 Sum_probs=6.6
Q ss_pred CCCCcEEEEEecCH
Q psy2618 134 LKSKGYAFVSFVKK 147 (390)
Q Consensus 134 g~~~g~afv~f~~~ 147 (390)
|..++|+--.|.+.
T Consensus 899 g~q~~~~g~kfsdh 912 (1282)
T KOG0921|consen 899 GTQRKFAGNKFSDH 912 (1282)
T ss_pred cchhhccccccccc
Confidence 44445554445443
No 242
>TIGR02542 B_forsyth_147 Bacteroides forsythus 147-residue repeat. The longest predicted protein in Bacteroides forsythus ATCC 43037 is over 3000 residues long and lacks homology to other known proteins. Immediately after the signal sequence are four tandem repeats, approximately 147 residues long. This model describes that repeat. This model describes that repeat.
Probab=53.81 E-value=22 Score=26.28 Aligned_cols=113 Identities=16% Similarity=0.234 Sum_probs=57.5
Q ss_pred CChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCee--eccceeeEeecCCCC-CCCCCC
Q psy2618 15 LDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRV--FLEKEMKVNWASSPG-NQPKQD 91 (390)
Q Consensus 15 Lp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~--~~g~~l~v~~~~~~~-~~~~~~ 91 (390)
||+-++ .|-++|+.-|+|.+|-.+.. +. .. .|+-.++|.. ++|+ |.|--..... .+....
T Consensus 11 lPPYTn--KLSDYfeSPGKI~svItvtq----------yp-dn---dal~~~~G~lE~vDg~-i~IGs~q~~~sV~i~gT 73 (145)
T TIGR02542 11 LPPYTN--KLSDYFESPGKIQSVITVTQ----------YP-DN---DALLYVHGTLEQVDGN-IRIGSGQTPASVRIQGT 73 (145)
T ss_pred cCCccc--hhhHHhcCCCceEEEEEEec----------cC-Cc---hhhheeeeehhhccCc-EEEccCCCcccEEEecC
Confidence 676654 58899999999998865433 22 11 2222334432 2333 3333222110 011111
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCC---CCCeeEEEEeeCCCCCCCCcEEEEEecCH
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAP---FGEISNCRIVRDPQTLKSKGYAFVSFVKK 147 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~---~G~i~~~~~~~~~~~g~~~g~afv~f~~~ 147 (390)
++.++.+| -|...|..+++++|++ |--|..-.+.+|-..--+-..||.-|...
T Consensus 74 Psgnnv~F---~PYTlT~~e~r~iF~Epm~YQGITReQV~rdGLP~GsYRiCFrL~~~~ 129 (145)
T TIGR02542 74 PSGNNVIF---PPYTLTYNELRQIFREPMVYQGITREQVQRDGLPEGSYRICFRLFNAT 129 (145)
T ss_pred CCCCceec---CceeeeHHHHHHHHhhhhhhccccHHHHhhcCCCCCceEEEEEEeccc
Confidence 22223333 2567899999999986 32333334444422212345688877654
No 243
>PF07530 PRE_C2HC: Associated with zinc fingers; InterPro: IPR006579 This domain is present in proteins found exclusively in the arthropods, including a number of Drosophila species, the silk moth and the gypsy moth. These proteins are possibly involved in RNA binding or single strand DNA binding.
Probab=53.47 E-value=27 Score=23.34 Aligned_cols=63 Identities=16% Similarity=0.244 Sum_probs=44.8
Q ss_pred HHHHHHhCCCCC-eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 110 QTLKEAFAPFGE-ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 110 ~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
++|.+.|...|. |..+.-+..+.++..-.--||+.....+..+++ +=..+.+..+.|+....+
T Consensus 2 ~~I~~~L~~~G~~v~~i~~~~~~~~k~pl~mf~veL~p~~~~k~i~---~Ik~l~~~~V~vE~~~k~ 65 (68)
T PF07530_consen 2 EEIKEELKDQGHPVRNIHNMHSRNTKKPLNMFFVELEPKPNNKEIY---KIKTLCGQRVKVERPRKR 65 (68)
T ss_pred HHHHHHHHHcCCceEEEEccccCCCCCCceEEEEeeccCcccccee---ehHhhCCeEEEEecCCCC
Confidence 567888888887 888888887766667777888887665533333 445678888888866543
No 244
>KOG1676|consensus
Probab=53.30 E-value=77 Score=30.93 Aligned_cols=18 Identities=28% Similarity=0.351 Sum_probs=7.8
Q ss_pred HHHHHhCCCCCeeEEEEeeC
Q psy2618 111 TLKEAFAPFGEISNCRIVRD 130 (390)
Q Consensus 111 ~l~~~f~~~G~i~~~~~~~~ 130 (390)
.++.+=+.-| ..+.++.|
T Consensus 160 Tikqlqe~sg--~k~i~iqd 177 (600)
T KOG1676|consen 160 TIKQLQEQSG--VKMILVQD 177 (600)
T ss_pred HHHHHHhhcC--CceEEEec
Confidence 3444444444 34444444
No 245
>smart00596 PRE_C2HC PRE_C2HC domain.
Probab=50.66 E-value=26 Score=23.39 Aligned_cols=61 Identities=16% Similarity=0.198 Sum_probs=42.7
Q ss_pred HHHHHHhCCCCC-eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 110 QTLKEAFAPFGE-ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 110 ~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
++|.+.|...|. +..+..+..+.++.+-.--+|+.....+... .++=+.++++++.|+...
T Consensus 2 ~~I~~~L~~~G~~v~~i~~m~~~~~r~P~nmf~vel~~~~~~~~---Il~ik~Lg~~~V~VEr~~ 63 (69)
T smart00596 2 SQIEEALKDIGFPVLFIHNMLNRDTKNPQNMFEVELVPAANGKE---ILNIKTLGGQRVTVERPH 63 (69)
T ss_pred HHHHHHHHHcCCceeEEEcccccCCCCcceeEEEEeeecCCCcc---eEeehhhCCeeEEEecCc
Confidence 467888888887 8888888887776666777787765533333 334456788888888654
No 246
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=49.03 E-value=33 Score=31.09 Aligned_cols=31 Identities=26% Similarity=0.281 Sum_probs=21.4
Q ss_pred EEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 140 AFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 140 afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
|||+|++..+|..|++.+..... +.+.++.+
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~~--~~~~v~~A 31 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKRP--NSWRVSPA 31 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCCC--CCceEeeC
Confidence 79999999999999985443322 33344443
No 247
>KOG0921|consensus
Probab=48.90 E-value=1.5e+02 Score=30.92 Aligned_cols=13 Identities=23% Similarity=0.381 Sum_probs=5.3
Q ss_pred EEecCHHHHHHHH
Q psy2618 247 VKFTTKETATHAI 259 (390)
Q Consensus 247 v~f~~~~~a~~a~ 259 (390)
|+|.-..+|.+++
T Consensus 1086 IklqIshEaAAcI 1098 (1282)
T KOG0921|consen 1086 IKLQISHEAAACI 1098 (1282)
T ss_pred eeEeccHHHHHHH
Confidence 4444334443333
No 248
>KOG2891|consensus
Probab=48.43 E-value=10 Score=32.58 Aligned_cols=75 Identities=19% Similarity=0.375 Sum_probs=46.7
Q ss_pred cceeEEcCCCCC------------CcHHHHHhhhcCCCceeEEEEecC----------------CCeE---------EEE
Q psy2618 206 NCTVYCGGFGKD------------LNEELVSKVFSPFGTIVDIRVFKE----------------KGYA---------FVK 248 (390)
Q Consensus 206 ~~~l~v~~l~~~------------~~~~~l~~~f~~~g~v~~~~~~~~----------------~g~~---------fv~ 248 (390)
..+|++.+||-. .+++.|+..|+.||.|..|.|+-- .||+ ||.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvq 228 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQ 228 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHH
Confidence 345777777632 467899999999999988877621 2333 344
Q ss_pred ecCHHHHHHHHHHhcCcee----cC----eEEEEEecccC
Q psy2618 249 FTTKETATHAIESIHNTDI----NG----HTVKCFWGKES 280 (390)
Q Consensus 249 f~~~~~a~~a~~~l~~~~~----~g----~~i~v~~~~~~ 280 (390)
|..-..-..|+..|.|..+ +| -.+.|.|.++.
T Consensus 229 fmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 229 FMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 4444445566777766643 22 35666665543
No 249
>PRK09630 DNA topoisomerase IV subunit A; Provisional
Probab=47.92 E-value=95 Score=29.59 Aligned_cols=92 Identities=15% Similarity=0.105 Sum_probs=56.3
Q ss_pred CCCeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecCCCCC-eEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREPGNDP-YAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~~~~g-~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+.++|.|+.||..++.++|.+.+... |.|. |.-++|.+..+ ---|+++....++..+..|=...- +.+.+
T Consensus 219 ~~~~ivItEIPy~~~t~~lie~I~~l~~~gki~-I~~i~D~s~~~v~i~I~Lk~~~~~~~vl~~Ly~~T~----lq~s~- 292 (479)
T PRK09630 219 NDKTLLIKEICPSTTTETLIRSIENAAKRGIIK-IDSIQDFSTDLPHIEIKLPKGIYAKDLLRPLFTHTE----CQVIL- 292 (479)
T ss_pred cCCEEEEEeCCCcccHHHHHHHHHHHHhcCCCc-cceeeccCCCCceEEEEECCCCCHHHHHHHHHhhCc----hhhhc-
Confidence 35699999999999999888776533 5554 45555554334 345677777788888776544321 11111
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccCHHHHHH
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKE 114 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~ 114 (390)
+...++.+.|-|..++-.++.+
T Consensus 293 -----------~~n~~~i~~~~P~~~~l~~il~ 314 (479)
T PRK09630 293 -----------TSRPTAIYQNKPVETSISEILR 314 (479)
T ss_pred -----------cceEEEEECCcccccCHHHHHH
Confidence 1224455667777666555544
No 250
>KOG2891|consensus
Probab=47.59 E-value=15 Score=31.64 Aligned_cols=22 Identities=41% Similarity=0.644 Sum_probs=18.3
Q ss_pred cCHHHHHHHhCCCCCeeEEEEe
Q psy2618 107 IETQTLKEAFAPFGEISNCRIV 128 (390)
Q Consensus 107 ~~~~~l~~~f~~~G~i~~~~~~ 128 (390)
-+++.|+..|+.||.|..+.+.
T Consensus 173 pse~rlr~a~eafg~ir~vdip 194 (445)
T KOG2891|consen 173 PSEDRLRKAFEAFGEIRNVDIP 194 (445)
T ss_pred ChHHHHHHHHHHhccceecCCc
Confidence 3577899999999999888764
No 251
>KOG2295|consensus
Probab=47.41 E-value=2.6 Score=39.89 Aligned_cols=71 Identities=14% Similarity=0.194 Sum_probs=52.4
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
...++||++|++++++-++|..+++.+-.+..+.+.....-.+...+.+|+|...-....|+.+|++..+.
T Consensus 229 hke~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~ 299 (648)
T KOG2295|consen 229 HKECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLR 299 (648)
T ss_pred hHHHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccc
Confidence 34678999999999999999999998876666655333222234567899998777777777777766553
No 252
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=47.39 E-value=57 Score=22.33 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=31.5
Q ss_pred HHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc
Q psy2618 22 ELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67 (390)
Q Consensus 22 ~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~ 67 (390)
.+|.+.+..+| +...++. .....++.|+-+.+.+.++++++++.
T Consensus 37 ~~~~~~~~~~G-a~~~~~s-GsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 37 DELKEAAEENG-ALGAKMS-GSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHTT-ESEEEEE-TTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC-CCceecC-CCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 46777778888 4555553 22225689999999999999988764
No 253
>KOG4483|consensus
Probab=46.20 E-value=94 Score=28.65 Aligned_cols=55 Identities=24% Similarity=0.256 Sum_probs=45.3
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCC-eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHH
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGE-ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 155 (390)
-.+.|-|.++|...-.+||...|+.|+. -..|.++.| ..+|..|.+...|.+|+.
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDd-------thalaVFss~~~AaeaLt 445 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDD-------THALAVFSSVNRAAEALT 445 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcCCceeEEeec-------ceeEEeecchHHHHHHhh
Confidence 4577889999999999999999999976 556666654 248999999999999984
No 254
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=44.93 E-value=81 Score=20.09 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=40.6
Q ss_pred eEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccH----HHHHHHHHH
Q psy2618 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHH----TVAATALAA 65 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~----~~A~~a~~~ 65 (390)
|+.|.|+.=.-....|++.+...-.|.++.+.... +.+-|+|... ++..++++.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~---~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET---KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT---TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC---CEEEEEEecCCCCHHHHHHHHHH
Confidence 57888888777888999999999888888875443 4789999865 445555543
No 255
>PTZ00191 60S ribosomal protein L23a; Provisional
Probab=43.67 E-value=68 Score=25.12 Aligned_cols=55 Identities=11% Similarity=0.062 Sum_probs=38.1
Q ss_pred EEeCCChhccHHHHHHHhcc-cC-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHH
Q psy2618 11 YVGNLDVSVTEELLCALFSQ-IG-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAA 65 (390)
Q Consensus 11 ~v~nLp~~~~~~~l~~~f~~-~G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~ 65 (390)
++=-++..++..+|++.++. |+ .|.+|....-..+..-|||.+....+|.....+
T Consensus 85 yvF~Vd~kAnK~qIK~AVEklf~VkV~kVNTli~p~g~KKA~V~L~~~~~aidva~k 141 (145)
T PTZ00191 85 LVFIVDQRANKTQIKKAVEKLYDVKVVKVNTLITPDGLKKAYIRLSPDVDALDVANK 141 (145)
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCeeEEEEeEEcCCCceEEEEEECCCCcHHHHHHh
Confidence 33346678899999988886 33 456666555444445899999988887766544
No 256
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=43.25 E-value=86 Score=19.95 Aligned_cols=53 Identities=21% Similarity=0.198 Sum_probs=41.5
Q ss_pred eEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCH----HHHHHHHHH
Q psy2618 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTK----ETATHAIES 261 (390)
Q Consensus 209 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~----~~a~~a~~~ 261 (390)
+.|.|+.-.--...|++.+...-.|.++.+....+.+-|.|... ++..++++.
T Consensus 2 ~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 2 FKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLETKTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTTTEEEEEESTTTSCHHHHHHHHHH
T ss_pred EEECCcccHHHHHHHHHHHhcCCCCcEEEEECCCCEEEEEEecCCCCHHHHHHHHHH
Confidence 56777777777788999999999999999998899999999754 444444443
No 257
>PF13046 DUF3906: Protein of unknown function (DUF3906)
Probab=41.28 E-value=42 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.159 Sum_probs=25.4
Q ss_pred ccHHHHHHHhcccCCceEEEEeecCC-CCCeEEE
Q psy2618 19 VTEELLCALFSQIGPVKGCKVIREPG-NDPYAFL 51 (390)
Q Consensus 19 ~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV 51 (390)
.-+.+|.++|-..-.|.++.+...++ .+|-|||
T Consensus 30 ~~e~eler~fl~~P~v~e~~l~EKKri~~G~gyV 63 (64)
T PF13046_consen 30 LVEVELERHFLPLPEVKEVALYEKKRIRKGAGYV 63 (64)
T ss_pred HHHHHhhhhccCCCCceEEEEEEEEeeeCCceeE
Confidence 45668888898888899998887665 5677776
No 258
>PF14893 PNMA: PNMA
Probab=40.02 E-value=22 Score=32.21 Aligned_cols=51 Identities=22% Similarity=0.276 Sum_probs=33.0
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcc----cCCce--EEEEeecCCCCCeEEEEEccH
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQ----IGPVK--GCKVIREPGNDPYAFLEFVHH 56 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~----~G~v~--~v~~~~~~~~~g~afV~F~~~ 56 (390)
.+.+.|.|.+||.++++++|++.+.. .|... .-.+.++ .+..-|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~-~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRRE-ENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhh-cccceeeeecccc
Confidence 46788999999999999999988764 34321 1101111 1234788888654
No 259
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=39.04 E-value=88 Score=21.96 Aligned_cols=53 Identities=15% Similarity=0.293 Sum_probs=39.1
Q ss_pred CCCcccCHHHHHHHhCC-CCC-eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHh
Q psy2618 102 DLSPEIETQTLKEAFAP-FGE-ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 102 nl~~~~~~~~l~~~f~~-~G~-i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 157 (390)
.++...+..+|++.++. ||. |.++..+..+. ..--|||++...++|.+....+
T Consensus 27 ~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~---~~KKA~V~L~~g~~A~~va~ki 81 (84)
T PRK14548 27 IVDRRATKPDIKRAVEELFDVKVEKVNTLITPK---GEKKAYVKLAEEYDAEEIASRL 81 (84)
T ss_pred EECCCCCHHHHHHHHHHHhCCceEEEEeEEcCC---CcEEEEEEeCCCCcHHHHHHhh
Confidence 44678899999999887 565 78887766542 2334999999999888876543
No 260
>PRK12758 DNA topoisomerase IV subunit A; Provisional
Probab=37.87 E-value=1.9e+02 Score=30.18 Aligned_cols=95 Identities=9% Similarity=0.124 Sum_probs=58.2
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcc---cCCceEEEEeecCCCCCe-EEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQ---IGPVKGCKVIREPGNDPY-AFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~---~G~v~~v~~~~~~~~~g~-afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
.+..+|.|+-||..++.+.|.+-... =|.|. |.-+.+.+.++. --|+++...+++..++.|-.. ..+...+
T Consensus 239 ~~~~~ivItEiPy~~~t~~lie~I~~~~~~~ki~-I~di~D~s~~~vrivI~lk~~~~~~~~~~~Ly~~----T~lq~s~ 313 (869)
T PRK12758 239 LDKKTLVITEIPYGTTTSSLIDSILKANDKGKIK-IKKVEDNTAADVEILVHLAPGVSPDKTIDALYAF----TDCEVSI 313 (869)
T ss_pred cCCCEEEEEecCCcccHHHHHHHHHHHHhcCCCc-eeeeEecCCCceEEEEEeCCCCCHHHHHHHHHhh----cCceeEe
Confidence 35678999999999988888766643 25665 565566554443 345677777777777665332 2233332
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHh
Q psy2618 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF 116 (390)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f 116 (390)
+. ...+.+.+.|...+-.+|...|
T Consensus 314 s~------------n~~vi~d~~P~~~~l~eiL~~~ 337 (869)
T PRK12758 314 SP------------NACVIIDNKPHFLGVSDILRRS 337 (869)
T ss_pred ee------------eEEEEECCeeeECCHHHHHHHH
Confidence 22 2445666777766666554444
No 261
>cd00187 TOP4c DNA Topoisomerase, subtype IIA; domain A'; bacterial DNA topoisomerase IV (C subunit, ParC), bacterial DNA gyrases (A subunit, GyrA),mammalian DNA toposiomerases II. DNA topoisomerases are essential enzymes that regulate the conformational changes in DNA topology by catalysing the concerted breakage and rejoining of DNA strands during normal cellular growth.
Probab=37.51 E-value=1.6e+02 Score=28.22 Aligned_cols=96 Identities=14% Similarity=0.268 Sum_probs=54.3
Q ss_pred CCeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecCCCC-CeEE-EEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREPGND-PYAF-LEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~~~~-g~af-V~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.++|.|+.||..++.+++.+.+... +.+..|.-++|.+.+ +.-| |+++....++..++.|-.. ..+...++
T Consensus 225 ~~~i~ItElP~~~~~~~~~e~i~~l~~~~k~~~I~~~~D~s~~~~vrivI~lk~~~~~~~~~~~L~k~----t~L~~s~~ 300 (445)
T cd00187 225 RNTIEITELPYQVNKAKLKEKIAELVKDKKIEGISDVRDESDREGIRFVIELKRGAMAEVVLNGLYKV----TKLQTTFG 300 (445)
T ss_pred CceEEEEeCCCcccHHHHHHHHHHHHhcCCCcccceeeeccCCCceEEEEEECCCccHHHHHHHHHHh----cCCceeee
Confidence 4789999999999999888876532 333333333444322 5444 4566665565554433222 22222222
Q ss_pred CCCCCCCCCCCCCceEEEE-cCCCcccCHHHHHHHhCC
Q psy2618 82 SSPGNQPKQDTSNHYHIFV-GDLSPEIETQTLKEAFAP 118 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v-~nl~~~~~~~~l~~~f~~ 118 (390)
. +..++. .|-|...+-.+|.+.|-.
T Consensus 301 ~------------Nm~~~~~~g~p~~~~l~~iL~~f~~ 326 (445)
T cd00187 301 I------------NMVAFDPNGRPKKLNLKEILQEFLD 326 (445)
T ss_pred e------------eEEEEecCCeeEEeCHHHHHHHHHH
Confidence 1 345666 677777776666655543
No 262
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=37.40 E-value=37 Score=22.15 Aligned_cols=19 Identities=26% Similarity=0.382 Sum_probs=15.5
Q ss_pred HHHHhhhcCCCceeEEEEe
Q psy2618 221 ELVSKVFSPFGTIVDIRVF 239 (390)
Q Consensus 221 ~~l~~~f~~~g~v~~~~~~ 239 (390)
.+||++|+..|.|.-+.+-
T Consensus 9 ~~iR~~fs~lG~I~vLYvn 27 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVN 27 (62)
T ss_pred HHHHHHHHhcCcEEEEEEc
Confidence 6899999999998765553
No 263
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=36.91 E-value=1e+02 Score=19.03 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=28.5
Q ss_pred HHHHHHHhcccC-CceEEEEeecCCCCCeEEEEEccHHHHHHHH
Q psy2618 21 EELLCALFSQIG-PVKGCKVIREPGNDPYAFLEFVHHTVAATAL 63 (390)
Q Consensus 21 ~~~l~~~f~~~G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~ 63 (390)
-.+|.+.|...| .|.++.............+.+.+.+.|.+++
T Consensus 12 l~~i~~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 12 LAEVTEILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHHHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 345666776665 4666665554435567888888888887775
No 264
>PF09869 DUF2096: Uncharacterized protein conserved in archaea (DUF2096); InterPro: IPR017098 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=36.88 E-value=1.5e+02 Score=23.71 Aligned_cols=53 Identities=19% Similarity=0.087 Sum_probs=42.6
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~ 67 (390)
..+++| +|+..+.++-|.++.+.+|-|.+. .+. .-.+-|.+.+...+|++.+.
T Consensus 112 ~~~iRv-~l~~~i~~erl~ei~E~~gvI~Ef---ee~----~~V~I~Gdke~Ik~aLKe~s 164 (169)
T PF09869_consen 112 FETIRV-KLKKPIQEERLQEISEWHGVIFEF---EED----DKVVIEGDKERIKKALKEFS 164 (169)
T ss_pred ceeEEE-ecCccchHHHHHHHHHHhceeEEe---cCC----cEEEEeccHHHHHHHHHHHH
Confidence 345666 789999999999999999988766 222 24788999999999998764
No 265
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=36.45 E-value=1.6e+02 Score=21.32 Aligned_cols=54 Identities=13% Similarity=0.030 Sum_probs=38.3
Q ss_pred ChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCe
Q psy2618 16 DVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKR 69 (390)
Q Consensus 16 p~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~ 69 (390)
..+-.+++|.-+...=|.|.+|.+-..--..-.+-+..++.+++.+.++.++..
T Consensus 6 ~~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~~ 59 (98)
T PF02829_consen 6 TPDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEKS 59 (98)
T ss_dssp -GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhcc
Confidence 345567788888887788898887654322336888999999999999987753
No 266
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=35.63 E-value=2e+02 Score=22.01 Aligned_cols=61 Identities=13% Similarity=0.158 Sum_probs=43.1
Q ss_pred CCCCeEEEeCCChh---ccHHHHHHHhcccC-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCee
Q psy2618 5 SQPTTLYVGNLDVS---VTEELLCALFSQIG-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRV 70 (390)
Q Consensus 5 ~~~~~l~v~nLp~~---~~~~~l~~~f~~~G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~ 70 (390)
.+...|.|+..... .+...|++.+..-| .+.++... .+...|.|.+.++-.+|.+.|....
T Consensus 33 gedpavQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~~-----~~~~~irf~~~~~Ql~Ak~vL~~~L 97 (127)
T PRK10629 33 QQESTLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITPE-----NDSLLIRFDSPEQSAAAKEVLDRTL 97 (127)
T ss_pred CCCceEEEecCCCCCccchHHHHHHHHHHCCCCcceEEee-----CCEEEEEECCHHHHHHHHHHHHHHc
Confidence 45667888877443 56678888888877 23344332 2268999999999999988877654
No 267
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=35.05 E-value=1.1e+02 Score=21.26 Aligned_cols=34 Identities=26% Similarity=0.393 Sum_probs=24.4
Q ss_pred ceeEEEEecC-CCeEEEEecCHHHHHHHHHHhcCc
Q psy2618 232 TIVDIRVFKE-KGYAFVKFTTKETATHAIESIHNT 265 (390)
Q Consensus 232 ~v~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~ 265 (390)
.|.++....+ +|+.||+=.+..++..|++.+.+.
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 4566655554 999999999999999999887664
No 268
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=34.11 E-value=80 Score=22.03 Aligned_cols=35 Identities=20% Similarity=0.307 Sum_probs=24.0
Q ss_pred CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCc
Q psy2618 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160 (390)
Q Consensus 121 ~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 160 (390)
.|.++.... .-+||-||+-.+.+++.+|++.+.+.
T Consensus 33 ~I~Si~~~~-----~lkGyIyVEA~~~~~V~~ai~gi~~i 67 (84)
T PF03439_consen 33 NIYSIFAPD-----SLKGYIYVEAERESDVKEAIRGIRHI 67 (84)
T ss_dssp ---EEEE-T-----TSTSEEEEEESSHHHHHHHHTT-TTE
T ss_pred ceEEEEEeC-----CCceEEEEEeCCHHHHHHHHhcccce
Confidence 355554432 37999999999999999999876654
No 269
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=33.28 E-value=1.8e+02 Score=26.93 Aligned_cols=81 Identities=15% Similarity=0.279 Sum_probs=0.0
Q ss_pred cCCCCCcceeEEcCCCCC-CcHHHHHhhhcCC----CceeEEEEecCC--------------------------------
Q psy2618 200 NQSSPTNCTVYCGGFGKD-LNEELVSKVFSPF----GTIVDIRVFKEK-------------------------------- 242 (390)
Q Consensus 200 ~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~----g~v~~~~~~~~~-------------------------------- 242 (390)
.+....+..|-|-|+.+. +...+|...|+.| |.+..|.|.+..
T Consensus 140 pe~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~ 219 (622)
T COG5638 140 PEEGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFG 219 (622)
T ss_pred cCCCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccC
Q ss_pred ---------------------------------------CeEEEEecCHHHHHHHHHHhcCcee--cCeEEEEEecccC
Q psy2618 243 ---------------------------------------GYAFVKFTTKETATHAIESIHNTDI--NGHTVKCFWGKES 280 (390)
Q Consensus 243 ---------------------------------------g~~fv~f~~~~~a~~a~~~l~~~~~--~g~~i~v~~~~~~ 280 (390)
=+|.|+|.+.+.+.......+|.++ .+..+.+.|....
T Consensus 220 ~dn~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfvPD~ 298 (622)
T COG5638 220 DDNVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFVPDS 298 (622)
T ss_pred CccchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeecCCC
No 270
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=33.16 E-value=20 Score=32.90 Aligned_cols=58 Identities=16% Similarity=0.092 Sum_probs=44.5
Q ss_pred CCeEEEeCCChhccHH--------HHHHHhcc--cCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHH
Q psy2618 7 PTTLYVGNLDVSVTEE--------LLCALFSQ--IGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALA 64 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~--------~l~~~f~~--~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~ 64 (390)
.|.+|+.+.....+.+ ++..+|.. .+++..++..++. ..+|..|++|+..+.|.+++.
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4667777777655554 99999998 6777777776554 356789999999999999873
No 271
>PHA03378 EBNA-3B; Provisional
Probab=32.31 E-value=3.6e+02 Score=27.14 Aligned_cols=9 Identities=22% Similarity=0.353 Sum_probs=4.8
Q ss_pred eeEEcCCCC
Q psy2618 208 TVYCGGFGK 216 (390)
Q Consensus 208 ~l~v~~l~~ 216 (390)
+||-..|+-
T Consensus 540 cvy~~~l~i 548 (991)
T PHA03378 540 CVYTEDLDI 548 (991)
T ss_pred ceeecccCc
Confidence 456555543
No 272
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=30.07 E-value=2.8e+02 Score=26.55 Aligned_cols=52 Identities=17% Similarity=0.286 Sum_probs=36.1
Q ss_pred eEEcCCCCCCcHHHHHhhhcCCCceeEEEEe-cC----------CCeEEEEecCHHHHHHHHHHh
Q psy2618 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVF-KE----------KGYAFVKFTTKETATHAIESI 262 (390)
Q Consensus 209 l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~-~~----------~g~~fv~f~~~~~a~~a~~~l 262 (390)
+.+|+++...+.+.|..+|.+. ++.+.++ .+ .+.-++.+.+.++|.......
T Consensus 348 lI~GG~~Kg~df~~L~~~~~~~--~~~~~~~G~~~~~i~~~l~~~~~~~~~~~~le~Av~~a~~~ 410 (448)
T COG0771 348 LIAGGDDKGADFSPLAEILAKV--IKKLVLIGEDAEKIAAALKEAGPSLVICETLEEAVQLAREL 410 (448)
T ss_pred EEECCCCCCCChhHHHHHhhhc--ceEEEEeCCCHHHHHHHHHhcCCceeecCcHHHHHHHHHHh
Confidence 8899999999999999998875 2333333 22 122277888888887776654
No 273
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=29.10 E-value=1.9e+02 Score=19.63 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=32.4
Q ss_pred HHHHHhhhcCCCceeEEEEecC--CCeEEEEecCHHHHHHHHHHhc
Q psy2618 220 EELVSKVFSPFGTIVDIRVFKE--KGYAFVKFTTKETATHAIESIH 263 (390)
Q Consensus 220 ~~~l~~~f~~~g~v~~~~~~~~--~g~~fv~f~~~~~a~~a~~~l~ 263 (390)
-.++.+.+..+| +....+.-. .++.|+-+.+.+.+.++.+.+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 356777778888 556666655 6788888889999988888764
No 274
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=29.03 E-value=86 Score=21.08 Aligned_cols=28 Identities=18% Similarity=0.301 Sum_probs=22.2
Q ss_pred CeEEEEecCHHHHHHHHHHhcCceecCe
Q psy2618 243 GYAFVKFTTKETATHAIESIHNTDINGH 270 (390)
Q Consensus 243 g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 270 (390)
.+.+|.|.+..+|.+|-+.|....+..+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~ 29 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVR 29 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEE
Confidence 3678999999999999998876655433
No 275
>KOG4365|consensus
Probab=28.76 E-value=9.4 Score=35.24 Aligned_cols=75 Identities=15% Similarity=-0.117 Sum_probs=56.1
Q ss_pred EEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 97 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
..++..++...++.++.-+|..||.|..+.+.+....+.....+|+.-.. .++..++..+....+.+..+++..+
T Consensus 5 ~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~~~ 79 (572)
T KOG4365|consen 5 KKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKAVS 79 (572)
T ss_pred hhhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhhcC
Confidence 45677888888999999999999999988887776666777788887654 3456666666666666666665544
No 276
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains. Included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains as seen in the uncharacterized structure (pdb 2F06) of the Bt0572 protein from Bacteroides thetaiotaomicron and related ACT domains. These tandem ACT domain proteins belong to the superfamily of ACT regulatory domains.
Probab=28.19 E-value=1.7e+02 Score=18.88 Aligned_cols=48 Identities=13% Similarity=0.052 Sum_probs=30.1
Q ss_pred cHHHHHHHhcccC-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCe
Q psy2618 20 TEELLCALFSQIG-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKR 69 (390)
Q Consensus 20 ~~~~l~~~f~~~G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~ 69 (390)
.-.+|-++|...| .|.++....... ++..-+.+.+.+.|.+++++ +|.
T Consensus 14 ~La~v~~~l~~~~inI~~i~~~~~~~-~~~~rl~~~~~~~~~~~L~~-~G~ 62 (66)
T cd04908 14 RLAAVTEILSEAGINIRALSIADTSE-FGILRLIVSDPDKAKEALKE-AGF 62 (66)
T ss_pred hHHHHHHHHHHCCCCEEEEEEEecCC-CCEEEEEECCHHHHHHHHHH-CCC
Confidence 4557778887776 466665544333 45666667777777777765 443
No 277
>PRK11901 hypothetical protein; Reviewed
Probab=27.94 E-value=90 Score=28.09 Aligned_cols=59 Identities=17% Similarity=0.209 Sum_probs=37.5
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCC-CCe---EEEEEccHHHHHHHHHHhcCee
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN-DPY---AFLEFVHHTVAATALAAMNKRV 70 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-~g~---afV~F~~~~~A~~a~~~l~~~~ 70 (390)
=+|-|-.+ -+++.|..|.+..+ +..+++.+..++ +.| .|=.|.+.++|..|++.|-...
T Consensus 246 YTLQL~Aa---s~~~~L~~f~~~~~-L~~~~VYqT~RnGkpWYVVvyG~Y~Sr~eAk~Ai~sLPa~l 308 (327)
T PRK11901 246 YTLQLSSA---SRSDTLNAYAKKQN-LSHYHVYETKRDGKPWYVLVSGNYASSAEAKRAIATLPAEV 308 (327)
T ss_pred eEEEeecC---CCHHHHHHHHHHcC-cCceEEEEEEECCceEEEEEecCcCCHHHHHHHHHhCCHHH
Confidence 34555553 45778888888775 455555544432 222 2236899999999999876543
No 278
>COG5180 PBP1 Protein interacting with poly(A)-binding protein [RNA processing and modification]
Probab=27.37 E-value=1.9e+02 Score=27.41 Aligned_cols=79 Identities=23% Similarity=0.223 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCCCcCCCCCCCCCCCCCCchhhhccCCccccCCCCCCCCCCcccccCCCCCCCCCCCCCCchhhh
Q psy2618 289 PSAPTTPQPNSTAPQFPYIYNQQMGYWYPQAAAYTATAAQLPQQFYQYGQLGYPQGYVGMVGRQVPGWQGIPGAQPTAQQ 368 (390)
Q Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~p~~~~y~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 368 (390)
|.+.+...|.++.+.++.+ ++|.|.| +.+|...|.+. +++.+.|+.-+..-.++...+.-++..
T Consensus 527 P~~~PSA~P~P~M~~~~~G---~~~~Y~P-----------~~PQ~~~~~PS--P~~~P~~Gs~Ga~~~G~~~~~~vP~~~ 590 (654)
T COG5180 527 PMGGPSASPNPMMNGFAAG---SMGMYMP-----------FQPQPMFYHPS--PQMMPVMGSNGAEEGGGNISPHVPAGF 590 (654)
T ss_pred cCCCCCCCCCCCcCCcccC---CcccccC-----------CCCCcccccCC--CCCCcccCCCCCcccCCcCCCCCCccc
Q ss_pred hhhhccCCccccccc
Q psy2618 369 MAVAQAQPSMMAAYA 383 (390)
Q Consensus 369 ~~~~~~~~~~~~~~~ 383 (390)
|++.+..|-...+||
T Consensus 591 M~~~PG~~~GA~~~P 605 (654)
T COG5180 591 MAAGPGAPMGAFGYP 605 (654)
T ss_pred cccCCCCCCccccCC
No 279
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=26.85 E-value=45 Score=19.04 Aligned_cols=16 Identities=31% Similarity=0.499 Sum_probs=10.2
Q ss_pred hhccHHHHHHHhcccC
Q psy2618 17 VSVTEELLCALFSQIG 32 (390)
Q Consensus 17 ~~~~~~~l~~~f~~~G 32 (390)
.++++++|++.|...+
T Consensus 19 ~Dtd~~~Lk~vF~~i~ 34 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIK 34 (36)
T ss_dssp S---HHHHHHHHHCS-
T ss_pred ccCCHHHHHHHHHHhc
Confidence 3688999999998764
No 280
>COG5584 Predicted small secreted protein [Function unknown]
Probab=25.61 E-value=1.7e+02 Score=21.07 Aligned_cols=33 Identities=33% Similarity=0.492 Sum_probs=26.4
Q ss_pred cCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCC
Q psy2618 101 GDLSPEIETQTLKEAFAPFGEISNCRIVRDPQT 133 (390)
Q Consensus 101 ~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~ 133 (390)
.|++.+..-+-+++.|+.+|+|+..++...+..
T Consensus 28 ~~is~e~alk~vk~afk~~mnI~GSwI~~~pe~ 60 (103)
T COG5584 28 KNISRENALKVVKEAFKQFMNIKGSWIVYEPEV 60 (103)
T ss_pred cccChhHHHHHHHHHhcccCCcceeEEEEeccc
Confidence 356666677789999999999999998876554
No 281
>KOG1295|consensus
Probab=25.15 E-value=98 Score=28.44 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=44.4
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCce-eEEEEecC--------CCeEEEEecCHHHHHHHHHHhcCcee
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTI-VDIRVFKE--------KGYAFVKFTTKETATHAIESIHNTDI 267 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v-~~~~~~~~--------~g~~fv~f~~~~~a~~a~~~l~~~~~ 267 (390)
+.+.|..||...++++|.+-..++-.- ....+.+. .+.++|.|...++.......++|..+
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 468999999999999998877775532 22222211 46789999999998877777777654
No 282
>PF00521 DNA_topoisoIV: DNA gyrase/topoisomerase IV, subunit A; InterPro: IPR002205 DNA topoisomerases regulate the number of topological links between two DNA strands (i.e. change the number of superhelical turns) by catalysing transient single- or double-strand breaks, crossing the strands through one another, then resealing the breaks []. These enzymes have several functions: to remove DNA supercoils during transcription and DNA replication; for strand breakage during recombination; for chromosome condensation; and to disentangle intertwined DNA during mitosis [, ]. DNA topoisomerases are divided into two classes: type I enzymes (5.99.1.2 from EC; topoisomerases I, III and V) break single-strand DNA, and type II enzymes (5.99.1.3 from EC; topoisomerases II, IV and VI) break double-strand DNA []. Type II topoisomerases are ATP-dependent enzymes, and can be subdivided according to their structure and reaction mechanisms: type IIA (topoisomerase II or gyrase, and topoisomerase IV) and type IIB (topoisomerase VI). These enzymes are responsible for relaxing supercoiled DNA as well as for introducing both negative and positive supercoils []. Type IIA topoisomerases together manage chromosome integrity and topology in cells. Topoisomerase II (called gyrase in bacteria) primarily introduces negative supercoils into DNA. In bacteria, topoisomerase II consists of two polypeptide subunits, gyrA and gyrB, which form a heterotetramer: (BA)2. In most eukaryotes, topoisomerase II consists of a single polypeptide, where the N- and C-terminal regions correspond to gyrB and gyrA, respectively; this topoisomerase II forms a homodimer that is equivalent to the bacterial heterotetramer. There are four functional domains in topoisomerase II: domain 1 (N-terminal of gyrB) is an ATPase, domain 2 (C-terminal of gyrB) is responsible for subunit interactions (differs between eukaryotic and bacterial enzymes), domain 3 (N-terminal of gyrA) is responsible for the breaking-rejoining function through its capacity to form protein-DNA bridges, and domain 4 (C-terminal of gyrA) is able to non-specifically bind DNA []. Topoisomerase IV primarily decatenates DNA and relaxes positive supercoils, which is important in bacteria, where the circular chromosome becomes catenated, or linked, during replication []. Topoisomerase IV consists of two polypeptide subunits, parE and parC, where parC is homologous to gyrA and parE is homologous to gyrB. This entry represents subunit A (gyrA and parC) of bacterial gyrase and topoisomerase IV, and the equivalent C-terminal region in eukaryotic topoisomerase II composed of a single polypeptide. This subunit has DNA-binding capacity. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0003677 DNA binding, 0003918 DNA topoisomerase (ATP-hydrolyzing) activity, 0005524 ATP binding, 0006265 DNA topological change, 0005694 chromosome; PDB: 1ZVU_A 1AB4_A 1X75_A 3NUH_A 1BJT_A 1BGW_A 2RGR_A 3KSB_B 3FOE_B 2NOV_C ....
Probab=24.17 E-value=1.9e+02 Score=27.51 Aligned_cols=59 Identities=14% Similarity=0.162 Sum_probs=35.1
Q ss_pred CeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecCCCCCeEE-EEEccHHHHHHHHHHhc
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREPGNDPYAF-LEFVHHTVAATALAAMN 67 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~~~~g~af-V~F~~~~~A~~a~~~l~ 67 (390)
.+|.|+-||..++.+++++.+... |.|. |.-++|.+.++.-| |+++...+++..++.|-
T Consensus 217 ~~i~ITELP~~~~t~~~~e~i~~l~~~~~i~-I~d~~D~Sd~~v~ivI~lk~~~~~~~~~~~L~ 279 (426)
T PF00521_consen 217 NTIVITELPYGVWTEKYKEKIEELVEDKKIK-ISDYRDESDRGVRIVIELKRGADPEKILEGLY 279 (426)
T ss_dssp EEEEEEE--TT--HHHHHHHHHHHHHTTSST-EEEEEE-BBTBS-EEEEESTTSHHHHHHHHHH
T ss_pred cEEEEEeCCccccHHHHHHHHHHHhccCcch-hhHHHhcCCCceeEEEEecCCccHHHHHHHHH
Confidence 699999999999998888777654 5666 55555554445444 56776556666665443
No 283
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH). ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH): Phenylalanine hydroxylases (PAH), tyrosine hydroxylases (TH) and tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes. This family of enzymes shares a common catalytic mechanism, in which dioxygen is used by an active site containing a single, reduced iron atom to hydroxylate an unactivated aromatic substrate, concomitant with a two-electron oxidation of tetrahydropterin (BH4) cofactor to its quinonoid dihydropterin form. Eukaryotic AAAHs have an N-terminal ACT (regulatory) domain, a middle catalytic domain and a C-terminal domain which is responsible for the oligomeric state of the enzyme forming a domain-swapped tetrameric coiled-coil. The PAH, TH, and TPH enzymes contain highly conserved catalytic domains but distinct N-terminal ACT domains and differ in their mech
Probab=24.07 E-value=2.2e+02 Score=18.85 Aligned_cols=50 Identities=12% Similarity=0.085 Sum_probs=31.4
Q ss_pred ccHHHHHHHhcccC-CceEEEEeecCCCC--CeEEEEEcc---HHHHHHHHHHhcC
Q psy2618 19 VTEELLCALFSQIG-PVKGCKVIREPGND--PYAFLEFVH---HTVAATALAAMNK 68 (390)
Q Consensus 19 ~~~~~l~~~f~~~G-~v~~v~~~~~~~~~--g~afV~F~~---~~~A~~a~~~l~~ 68 (390)
-+-.++.+.|+.+| .+.++.....+... -..||++.. ....+.+++.+..
T Consensus 11 G~L~~vL~~f~~~~vni~~I~Srp~~~~~~~~~f~id~~~~~~~~~~~~~l~~l~~ 66 (75)
T cd04880 11 GALAKALKVFAERGINLTKIESRPSRKGLWEYEFFVDFEGHIDDPDVKEALEELKR 66 (75)
T ss_pred CHHHHHHHHHHHCCCCEEEEEeeecCCCCceEEEEEEEECCCCCHHHHHHHHHHHH
Confidence 35678888898886 45555443333222 267888874 5666777776654
No 284
>smart00434 TOP4c DNA Topoisomerase IV. Bacterial DNA topoisomerase IV, GyrA, ParC
Probab=23.81 E-value=2.9e+02 Score=26.46 Aligned_cols=60 Identities=15% Similarity=0.251 Sum_probs=36.8
Q ss_pred CCCeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecCC--CCCeEE-EEEccHHHHHHHHHH
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREPG--NDPYAF-LEFVHHTVAATALAA 65 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~~--~~g~af-V~F~~~~~A~~a~~~ 65 (390)
.+++|.|+.||..++.+++.+.+... +.|..+.-+.|.. ..+.-| |+++....++..++.
T Consensus 231 ~~~~ivItElP~~~~~~~~~e~I~~lv~~~ki~~i~~~~des~~~~~vrivI~lk~~~~~~~~~~~ 296 (445)
T smart00434 231 GRNTIVITELPYQVNKAKLIEKIAELVKDKKIEGIIDVRDESHDRTGVRIVIELKRGAMAEVVLNG 296 (445)
T ss_pred CCceEEEEeCCCcccHHHHHHHHHHHHhcCCCCcceehhhccCCCCceEEEEEECCCcCHHHHHHH
Confidence 34789999999999999988876542 4444444344332 234444 456655555555443
No 285
>PF08156 NOP5NT: NOP5NT (NUC127) domain; InterPro: IPR012974 This N-terminal domain is found in RNA-binding proteins of the NOP5 family [].
Probab=23.81 E-value=31 Score=22.97 Aligned_cols=38 Identities=21% Similarity=0.066 Sum_probs=26.7
Q ss_pred HHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh
Q psy2618 22 ELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM 66 (390)
Q Consensus 22 ~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l 66 (390)
++|.+.|..+.....+.- -.+|..|+|.++|..++..+
T Consensus 27 ~~v~~~~~~~~~f~k~vk-------L~aF~pF~s~~~ALe~~~ai 64 (67)
T PF08156_consen 27 EEVQKSFSDPEKFSKIVK-------LKAFSPFKSAEEALENANAI 64 (67)
T ss_pred HHHHHHHcCHHHHhhhhh-------hhhccCCCCHHHHHHHHHHh
Confidence 688888877654432211 15899999999999888764
No 286
>CHL00123 rps6 ribosomal protein S6; Validated
Probab=23.59 E-value=1.4e+02 Score=21.46 Aligned_cols=51 Identities=14% Similarity=0.122 Sum_probs=30.7
Q ss_pred CChhccHHHHHHHhccc--------CCceEEEEeec--------CCCCC-eEEEEEccHHHHHHHHHH
Q psy2618 15 LDVSVTEELLCALFSQI--------GPVKGCKVIRE--------PGNDP-YAFLEFVHHTVAATALAA 65 (390)
Q Consensus 15 Lp~~~~~~~l~~~f~~~--------G~v~~v~~~~~--------~~~~g-~afV~F~~~~~A~~a~~~ 65 (390)
|.++.+++++..+.+.+ |.|.++..--. +..+| |.++.|.-..++.+.+++
T Consensus 14 l~p~l~e~~~~~~~~~~~~~i~~~gg~i~~~~~wG~r~LAY~I~k~~~G~Yv~~~f~~~~~~i~eler 81 (97)
T CHL00123 14 LKPDLNEEELLKWIENYKKLLRKRGAKNISVQNRGKRKLSYKINKYEDGIYIQMNYSGNGKLVNSLEK 81 (97)
T ss_pred ECCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEeecCeeeeEEcCCCCEEEEEEEEEEECHHHHHHHHH
Confidence 34566777666665543 34544432111 11334 899999988888888875
No 287
>COG2608 CopZ Copper chaperone [Inorganic ion transport and metabolism]
Probab=22.47 E-value=2.5e+02 Score=18.73 Aligned_cols=44 Identities=25% Similarity=0.265 Sum_probs=37.1
Q ss_pred eeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecC
Q psy2618 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTT 251 (390)
Q Consensus 208 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~ 251 (390)
.+.|.++.-.--...+...++....+..+.+-..++.+.|.|++
T Consensus 5 ~l~v~~MtC~~C~~~V~~al~~v~gv~~v~v~l~~~~~~V~~d~ 48 (71)
T COG2608 5 TLKVEGMTCGHCVKTVEKALEEVDGVASVDVDLEKGTATVTFDS 48 (71)
T ss_pred EEEECCcCcHHHHHHHHHHHhcCCCeeEEEEEcccCeEEEEEcC
Confidence 46777777666677888889998889999999899999999988
No 288
>PRK10629 EnvZ/OmpR regulon moderator; Provisional
Probab=22.37 E-value=3.6e+02 Score=20.63 Aligned_cols=69 Identities=17% Similarity=0.147 Sum_probs=46.2
Q ss_pred eeEEcCCCCC---CcHHHHHhhhcCCC-ceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecc
Q psy2618 208 TVYCGGFGKD---LNEELVSKVFSPFG-TIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278 (390)
Q Consensus 208 ~l~v~~l~~~---~~~~~l~~~f~~~g-~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 278 (390)
.|.|...... .+-..+.+.++.-| .++++.. +.+...|.|++.++-.+|.+.|...--++-.|.++.+.
T Consensus 37 avQIs~~~~g~~~~~~~~v~~~L~~~gI~~ksi~~--~~~~~~irf~~~~~Ql~Ak~vL~~~L~~~y~VAlnl~p 109 (127)
T PRK10629 37 TLAIRAVHQGASLPDGFYVYQHLDANGIHIKSITP--ENDSLLIRFDSPEQSAAAKEVLDRTLPHGYIIAQQDDN 109 (127)
T ss_pred eEEEecCCCCCccchHHHHHHHHHHCCCCcceEEe--eCCEEEEEECCHHHHHHHHHHHHHHcCCCCEEEEecCC
Confidence 3666655332 56677888888766 4454444 45688999999999999998887664344556555443
No 289
>KOG2375|consensus
Probab=22.10 E-value=3.2e+02 Score=27.98 Aligned_cols=7 Identities=14% Similarity=0.311 Sum_probs=2.8
Q ss_pred CCCCCch
Q psy2618 317 PQAAAYT 323 (390)
Q Consensus 317 p~~~~y~ 323 (390)
|...+++
T Consensus 593 P~~~~~p 599 (756)
T KOG2375|consen 593 PSPNGSP 599 (756)
T ss_pred CCCCCCC
Confidence 3333444
No 290
>TIGR01061 parC_Gpos DNA topoisomerase IV, A subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=21.67 E-value=4.3e+02 Score=27.31 Aligned_cols=60 Identities=12% Similarity=0.227 Sum_probs=36.9
Q ss_pred CCeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecCC-CCCeEE-EEEccHHHHHHHHHHh
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREPG-NDPYAF-LEFVHHTVAATALAAM 66 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~~-~~g~af-V~F~~~~~A~~a~~~l 66 (390)
..+|.|+.||..++.++|.+.+... +.+..+.-++|.. ..|.-| |+++....++..+..|
T Consensus 248 ~~~i~ItEiP~~~~~~~~~~~i~~l~~~~~~~~i~~~~Des~~~~vrivi~lk~~~~~~~~~~~l 312 (738)
T TIGR01061 248 LNQIVITEIPYETNKANIVKKIEEIIFDNKVAGIEEVRDESDRNGIRIIIELKKDANAEKILNFL 312 (738)
T ss_pred CcEEEEEecCCccCHHHHHHHHHHHHhcCCccccceeeeccCCCceEEEEEECCCCCHHHHHHHH
Confidence 4579999999999999888776533 2333333344433 234444 4666666666666443
No 291
>COG0018 ArgS Arginyl-tRNA synthetase [Translation, ribosomal structure and biogenesis]
Probab=21.58 E-value=6.8e+02 Score=25.00 Aligned_cols=97 Identities=12% Similarity=0.181 Sum_probs=61.7
Q ss_pred HHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc--Ceee------ccceeeEeecCCCCCCCCCCC
Q psy2618 21 EELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN--KRVF------LEKEMKVNWASSPGNQPKQDT 92 (390)
Q Consensus 21 ~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~--~~~~------~g~~l~v~~~~~~~~~~~~~~ 92 (390)
-++|.+.|..-+-|.+|.+.. -||-.+.+....-++...+.+. +... .++++.|+++++.
T Consensus 60 A~~i~~~l~~~~~~~~veiaG----pgfINf~l~~~~~~~~~~~~l~~~~~~~G~~~~~~~~kV~iE~sSaN-------- 127 (577)
T COG0018 60 AEEIAEKLDTDEIIEKVEIAG----PGFINFFLSPEFLAELLLEILEKGDDRYGRSKLGKGKKVVIEYSSAN-------- 127 (577)
T ss_pred HHHHHHhccccCcEeEEEEcC----CCEEEEEECHHHHHHHHHHHHHhcccccCccccCCCCEEEEEEeCCC--------
Confidence 345666666655566676532 2355555554444444444444 2222 4689999988653
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCC-eeEEEEeeC
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGE-ISNCRIVRD 130 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~~~ 130 (390)
...-+.||.+-..+-=+.|.++++..|. |....-+-|
T Consensus 128 -ptkplHiGHlR~aiiGDsLaril~~~Gy~V~r~~yvnD 165 (577)
T COG0018 128 -PTGPLHIGHLRNAIIGDSLARILEFLGYDVTRENYVND 165 (577)
T ss_pred -CCCCcccchhhhhHHHHHHHHHHHHcCCCeeEEeeECc
Confidence 3455899999888888999999999887 666555544
No 292
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=21.17 E-value=3.3e+02 Score=19.74 Aligned_cols=48 Identities=15% Similarity=0.199 Sum_probs=35.2
Q ss_pred CCcHHHHHhhhcCCCceeEEEEecC---CCeEEEEecCHHHHHHHHHHhcC
Q psy2618 217 DLNEELVSKVFSPFGTIVDIRVFKE---KGYAFVKFTTKETATHAIESIHN 264 (390)
Q Consensus 217 ~~~~~~l~~~f~~~g~v~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~~ 264 (390)
+-.+++|..+...-|.|++|.+..+ .=.+.+...+.+++.+.++.++.
T Consensus 8 ~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 8 DEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 3456788888887778999988755 22456778899999999998854
No 293
>COG3254 Uncharacterized conserved protein [Function unknown]
Probab=21.08 E-value=2.6e+02 Score=20.48 Aligned_cols=41 Identities=17% Similarity=0.357 Sum_probs=28.5
Q ss_pred HHHHHhcccCCceEEEEeecC-CCCCeEEEEEccHHHHHHHHH
Q psy2618 23 LLCALFSQIGPVKGCKVIREP-GNDPYAFLEFVHHTVAATALA 64 (390)
Q Consensus 23 ~l~~~f~~~G~v~~v~~~~~~-~~~g~afV~F~~~~~A~~a~~ 64 (390)
+|..+++..| |.+..|.-+. .+.-|+++++.|.++.-+++.
T Consensus 28 E~~a~lk~ag-i~nYSIfLde~~n~lFgy~E~~d~~a~m~~~a 69 (105)
T COG3254 28 ELLALLKEAG-IRNYSIFLDEEENLLFGYWEYEDFEADMAKMA 69 (105)
T ss_pred HHHHHHHHcC-CceeEEEecCCcccEEEEEEEcChHHHHHHHh
Confidence 6667778877 5666665544 355699999997666666654
No 294
>PRK11901 hypothetical protein; Reviewed
Probab=21.00 E-value=2.1e+02 Score=25.86 Aligned_cols=63 Identities=22% Similarity=0.355 Sum_probs=41.4
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEE--EecCHHHHHHHHHHhcCc
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFV--SFVKKAEAENAITAMNGQ 160 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv--~f~~~~~a~~a~~~l~~~ 160 (390)
..+.+|-|..+. +++.|..|..+.+ +..+++.+...+|+ .-|..| .|.+.++|+.|+..|...
T Consensus 243 ~~~YTLQL~Aas---~~~~L~~f~~~~~-L~~~~VYqT~RnGk-pWYVVvyG~Y~Sr~eAk~Ai~sLPa~ 307 (327)
T PRK11901 243 ASHYTLQLSSAS---RSDTLNAYAKKQN-LSHYHVYETKRDGK-PWYVLVSGNYASSAEAKRAIATLPAE 307 (327)
T ss_pred CCCeEEEeecCC---CHHHHHHHHHHcC-cCceEEEEEEECCc-eEEEEEecCcCCHHHHHHHHHhCCHH
Confidence 345677776653 5777888877775 45566665544443 233333 699999999999987643
No 295
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=20.68 E-value=3e+02 Score=19.96 Aligned_cols=49 Identities=16% Similarity=0.234 Sum_probs=30.6
Q ss_pred CCCeEEEeCCChhccHHHHHHHhccc--CCceEEEEeecCCCCCeEEEEEccH
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQI--GPVKGCKVIREPGNDPYAFLEFVHH 56 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~--G~v~~v~~~~~~~~~g~afV~F~~~ 56 (390)
...-|||++++..+-+.--..+-+.+ |.+.-+. .+++..||+|-++.+.
T Consensus 26 v~~GVyVg~~S~rVRd~lW~~v~~~~~~G~avmv~--~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 26 VRAGVYVGDVSRRIREMIWQQVTQLAEEGNVVMAW--ATNTESGFEFQTFGEN 76 (97)
T ss_pred cCCCcEEcCCCHHHHHHHHHHHHHhCCCCcEEEEE--cCCCCCCcEEEecCCC
Confidence 45669999999888776555555444 4443333 3344558888776654
No 296
>COG5193 LHP1 La protein, small RNA-binding pol III transcript stabilizing protein and related La-motif-containing proteins involved in translation [Posttranslational modification, protein turnover, chaperones / Translation, ribosomal structure and biogenesis]
Probab=20.49 E-value=56 Score=30.11 Aligned_cols=61 Identities=23% Similarity=0.243 Sum_probs=48.0
Q ss_pred ceEEEEcCCCcccCHH--------HHHHHhCC--CCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHH
Q psy2618 95 HYHIFVGDLSPEIETQ--------TLKEAFAP--FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~--------~l~~~f~~--~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~ 155 (390)
.+.+|+.+...+.+.+ ++...|.. .+++..+...++......+|-.|++|...+.+.+...
T Consensus 174 qr~~y~n~fG~e~~~~a~~~e~~~d~~~~~p~h~h~~~~~i~~rrd~~nkn~~gSv~~efk~~~~~q~~nn 244 (438)
T COG5193 174 QRDVYQNGFGKEDVNNASRPEQQEDLEIQFPPHYHAPPSQIRNRRDWLNKNFRGSVFVEFKYFREAQRFNN 244 (438)
T ss_pred hhhHHhhcCCcccccccccchhhhhHHhhCCCcccCChhhccchhhhhhccccCcccccccChHHHHHHhc
Confidence 4667777777655444 89999998 5667777777877666788999999999999998874
No 297
>COG4010 Uncharacterized protein conserved in archaea [Function unknown]
Probab=20.38 E-value=3e+02 Score=21.50 Aligned_cols=46 Identities=15% Similarity=0.123 Sum_probs=36.3
Q ss_pred CChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc
Q psy2618 15 LDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67 (390)
Q Consensus 15 Lp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~ 67 (390)
|+..+-++-|.++.+..|.|.+.. -.| -..-|.|.+...+|++.+.
T Consensus 119 L~epl~~eRlqDi~E~hgvIiE~~-E~D------~V~i~Gd~drVk~aLke~~ 164 (170)
T COG4010 119 LREPLAEERLQDIAETHGVIIEFE-EYD------LVAIYGDSDRVKKALKEIG 164 (170)
T ss_pred cCchhHHHHHHHHHHhhheeEEee-ecc------EEEEeccHHHHHHHHHHHH
Confidence 566778889999999999887665 222 4667999999999998754
No 298
>PF10915 DUF2709: Protein of unknown function (DUF2709); InterPro: IPR024484 Members of this family appear restricted to Chlamydiales. Their function is unknown.
Probab=20.15 E-value=1.9e+02 Score=23.79 Aligned_cols=31 Identities=19% Similarity=0.255 Sum_probs=27.2
Q ss_pred EEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 52 EFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 52 ~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
-|.+.++|.+-+++ .++.|...+|.|....+
T Consensus 48 I~qs~e~ai~~lE~-e~KlWreteI~I~~g~p 78 (238)
T PF10915_consen 48 IFQSAEDAIRILEE-EGKLWRETEIKIQSGKP 78 (238)
T ss_pred hccCHHHHHHHHHH-hcchheeeeEEEecCCc
Confidence 49999999999986 89899999999987764
Done!