Query psy2618
Match_columns 390
No_of_seqs 297 out of 2715
Neff 10.4
Searched_HMMs 29240
Date Fri Aug 16 20:47:32 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2618.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2618hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3smz_A Protein raver-1, ribonu 100.0 8.6E-47 2.9E-51 336.2 29.7 241 5-282 20-266 (284)
2 2ghp_A U4/U6 snRNA-associated 100.0 1.6E-46 5.6E-51 335.7 26.3 245 3-280 37-291 (292)
3 3md3_A Nuclear and cytoplasmic 100.0 2E-34 6.8E-39 235.5 20.8 163 8-173 1-165 (166)
4 1b7f_A Protein (SXL-lethal pro 100.0 6.7E-34 2.3E-38 232.8 20.2 162 6-172 2-168 (168)
5 4f02_A Polyadenylate-binding p 100.0 1.8E-34 6E-39 245.0 15.7 166 5-175 13-181 (213)
6 4f02_A Polyadenylate-binding p 100.0 5.2E-34 1.8E-38 242.1 17.9 167 92-281 12-182 (213)
7 1fxl_A Paraneoplastic encephal 100.0 1.1E-33 3.9E-38 231.2 18.9 162 6-172 1-167 (167)
8 1l3k_A Heterogeneous nuclear r 100.0 2E-33 6.7E-38 236.0 19.1 174 3-178 9-186 (196)
9 2qfj_A FBP-interacting repress 100.0 7.2E-34 2.5E-38 242.5 16.6 172 6-177 27-207 (216)
10 2cjk_A Nuclear polyadenylated 100.0 1E-33 3.5E-38 231.5 12.4 163 5-175 1-166 (167)
11 2g4b_A Splicing factor U2AF 65 100.0 1.5E-32 5.1E-37 225.7 17.6 160 5-173 2-172 (172)
12 3nmr_A Cugbp ELAV-like family 100.0 1.4E-32 4.9E-37 226.5 16.9 164 5-173 1-175 (175)
13 2qfj_A FBP-interacting repress 100.0 1.8E-32 6.2E-37 233.8 16.9 174 94-281 27-206 (216)
14 3tyt_A Heterogeneous nuclear r 100.0 4.2E-32 1.4E-36 227.7 18.3 164 5-172 2-204 (205)
15 1b7f_A Protein (SXL-lethal pro 100.0 8.8E-32 3E-36 220.2 19.2 159 94-277 2-168 (168)
16 2yh0_A Splicing factor U2AF 65 100.0 1E-31 3.4E-36 226.0 19.2 168 5-176 2-195 (198)
17 3md3_A Nuclear and cytoplasmic 100.0 1.4E-31 4.6E-36 218.6 19.4 160 96-279 1-166 (166)
18 1fje_B Nucleolin RBD12, protei 100.0 5.3E-32 1.8E-36 223.0 16.7 165 2-175 8-174 (175)
19 3pgw_A U1-A; protein-RNA compl 100.0 1.6E-31 5.5E-36 237.3 21.0 166 3-173 5-281 (282)
20 1fxl_A Paraneoplastic encephal 100.0 1.5E-31 5.1E-36 218.6 18.8 158 95-277 2-167 (167)
21 1l3k_A Heterogeneous nuclear r 100.0 1.4E-31 4.7E-36 224.7 19.1 174 90-284 8-187 (196)
22 2adc_A Polypyrimidine tract-bi 100.0 4E-31 1.4E-35 226.9 20.5 165 4-175 31-228 (229)
23 3pgw_A U1-A; protein-RNA compl 100.0 2.8E-30 9.4E-35 229.3 23.0 185 91-278 5-281 (282)
24 3nmr_A Cugbp ELAV-like family 100.0 7.6E-31 2.6E-35 216.1 17.3 161 94-278 2-175 (175)
25 1qm9_A Polypyrimidine tract-bi 100.0 4.9E-31 1.7E-35 221.7 16.1 163 6-175 2-197 (198)
26 2ghp_A U4/U6 snRNA-associated 100.0 8.2E-31 2.8E-35 234.0 18.1 170 5-175 115-291 (292)
27 2cjk_A Nuclear polyadenylated 100.0 1.9E-31 6.6E-36 217.9 12.4 159 94-280 2-166 (167)
28 3smz_A Protein raver-1, ribonu 100.0 3.4E-30 1.2E-34 229.0 20.9 170 5-177 93-266 (284)
29 2adc_A Polypyrimidine tract-bi 100.0 4.5E-30 1.5E-34 220.4 20.9 185 91-280 30-228 (229)
30 3tyt_A Heterogeneous nuclear r 100.0 2.7E-30 9.2E-35 216.7 19.0 179 94-277 3-204 (205)
31 3sde_A Paraspeckle component 1 100.0 6.2E-30 2.1E-34 223.9 18.8 157 5-176 20-180 (261)
32 1qm9_A Polypyrimidine tract-bi 100.0 6.1E-30 2.1E-34 215.0 17.4 181 95-280 3-197 (198)
33 1fje_B Nucleolin RBD12, protei 100.0 2.4E-30 8.2E-35 213.1 14.3 164 91-280 9-174 (175)
34 2yh0_A Splicing factor U2AF 65 100.0 5.1E-29 1.8E-33 209.4 19.3 177 94-282 3-196 (198)
35 2g4b_A Splicing factor U2AF 65 100.0 3.3E-29 1.1E-33 205.7 17.4 153 94-278 3-172 (172)
36 3sde_A Paraspeckle component 1 100.0 1.2E-27 4.1E-32 209.4 19.7 155 90-281 17-180 (261)
37 2kn4_A Immunoglobulin G-bindin 99.9 3.6E-23 1.2E-27 166.8 15.4 142 36-177 2-152 (158)
38 4f25_A Polyadenylate-binding p 99.9 3.2E-23 1.1E-27 157.2 9.9 106 6-111 4-113 (115)
39 2i2y_A Fusion protein consists 99.9 1.2E-21 4.2E-26 156.2 10.9 126 44-175 11-148 (150)
40 2kn4_A Immunoglobulin G-bindin 99.9 5.3E-21 1.8E-25 154.0 13.8 146 124-283 2-153 (158)
41 2i2y_A Fusion protein consists 99.9 2E-21 6.7E-26 155.0 10.3 138 134-281 10-149 (150)
42 4f25_A Polyadenylate-binding p 99.8 2.9E-21 1E-25 146.3 9.7 110 94-222 4-113 (115)
43 4fxv_A ELAV-like protein 1; RN 99.8 4.7E-20 1.6E-24 135.3 10.5 81 94-174 18-98 (99)
44 3lqv_A PRE-mRNA branch site pr 99.8 1.3E-20 4.5E-25 143.1 7.7 105 4-121 5-109 (115)
45 4fxv_A ELAV-like protein 1; RN 99.8 4.5E-20 1.5E-24 135.4 9.3 78 6-83 18-98 (99)
46 2hvz_A Splicing factor, argini 99.8 4.4E-20 1.5E-24 136.7 8.2 95 8-104 1-100 (101)
47 2lea_A Serine/arginine-rich sp 99.8 5E-20 1.7E-24 143.4 7.4 124 48-177 6-129 (135)
48 2cqi_A Nucleolysin TIAR; RNA r 99.8 6.7E-19 2.3E-23 130.8 12.7 86 2-87 10-96 (103)
49 3s8s_A Histone-lysine N-methyl 99.8 4.4E-19 1.5E-23 132.7 11.7 83 93-175 4-86 (110)
50 1sjq_A Polypyrimidine tract-bi 99.8 2.5E-19 8.5E-24 130.9 9.9 81 4-87 13-95 (105)
51 2lxi_A RNA-binding protein 10; 99.8 1.1E-19 3.7E-24 131.3 6.9 83 95-177 1-85 (91)
52 1x4a_A Splicing factor, argini 99.8 9.9E-19 3.4E-23 131.2 11.9 84 3-86 18-101 (109)
53 2lxi_A RNA-binding protein 10; 99.8 1.2E-19 4E-24 131.1 6.5 80 7-86 1-85 (91)
54 1sjq_A Polypyrimidine tract-bi 99.8 4.5E-19 1.5E-23 129.5 9.6 82 203-284 13-96 (105)
55 2lkz_A RNA-binding protein 5; 99.8 3.1E-19 1.1E-23 129.3 8.6 82 93-174 7-94 (95)
56 3r27_A HnRNP L, heterogeneous 99.8 8.5E-19 2.9E-23 126.7 10.8 80 202-281 17-98 (100)
57 3s8s_A Histone-lysine N-methyl 99.8 5.4E-19 1.9E-23 132.1 10.0 80 4-83 3-85 (110)
58 2cq3_A RNA-binding protein 9; 99.8 2.1E-18 7.1E-23 128.1 13.0 86 3-88 11-97 (103)
59 2fy1_A RNA-binding motif prote 99.8 1.2E-18 4E-23 132.0 11.7 86 1-86 1-88 (116)
60 1whw_A Hypothetical protein ri 99.8 1.3E-18 4.5E-23 128.2 11.6 86 2-87 3-91 (99)
61 2lkz_A RNA-binding protein 5; 99.8 5.5E-19 1.9E-23 127.9 9.0 81 3-83 5-94 (95)
62 2wbr_A GW182, gawky, LD47780P; 99.8 6.7E-19 2.3E-23 122.2 8.7 73 6-81 6-78 (89)
63 3r27_A HnRNP L, heterogeneous 99.8 1.2E-18 4.2E-23 125.8 10.1 79 3-84 17-97 (100)
64 1rk8_A CG8781-PA, CG8781-PA pr 99.8 9.6E-19 3.3E-23 141.5 10.6 127 51-177 11-154 (165)
65 2ad9_A Polypyrimidine tract-bi 99.8 1.6E-18 5.5E-23 130.0 10.9 83 3-88 27-111 (119)
66 2dgx_A KIAA0430 protein; RRM d 99.8 1.9E-18 6.4E-23 126.4 10.9 82 4-85 6-91 (96)
67 2dgo_A Cytotoxic granule-assoc 99.8 5.7E-18 1.9E-22 128.4 13.9 91 89-179 9-99 (115)
68 2cq1_A PTB-like protein L; RRM 99.8 2.9E-18 9.9E-23 125.6 11.8 81 3-86 11-93 (101)
69 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.5E-18 5E-23 124.1 10.0 80 3-82 3-85 (85)
70 2cq0_A Eukaryotic translation 99.8 4.3E-18 1.5E-22 126.4 12.9 89 89-177 9-97 (103)
71 2dgs_A DAZ-associated protein 99.8 3.2E-18 1.1E-22 126.1 12.1 85 2-87 5-92 (99)
72 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.6E-18 5.6E-23 124.5 10.2 83 93-175 4-86 (87)
73 3md1_A Nuclear and cytoplasmic 99.8 3.4E-18 1.2E-22 121.6 11.6 81 96-176 2-82 (83)
74 2dnz_A Probable RNA-binding pr 99.8 4.1E-18 1.4E-22 124.6 12.3 83 5-87 3-88 (95)
75 2dgs_A DAZ-associated protein 99.8 5.1E-18 1.8E-22 125.0 12.9 87 90-177 5-91 (99)
76 1x4d_A Matrin 3; structural ge 99.8 2.7E-18 9.3E-23 125.5 11.1 79 204-282 13-94 (102)
77 1whw_A Hypothetical protein ri 99.8 4.2E-18 1.5E-22 125.5 12.3 87 91-177 4-90 (99)
78 1wex_A Hypothetical protein (r 99.8 2.3E-18 7.8E-23 127.0 10.8 81 3-86 11-93 (104)
79 2do4_A Squamous cell carcinoma 99.8 2.4E-18 8.3E-23 127.0 10.8 83 3-85 13-97 (100)
80 2dnz_A Probable RNA-binding pr 99.8 4.3E-18 1.5E-22 124.4 12.0 85 93-177 3-87 (95)
81 2wbr_A GW182, gawky, LD47780P; 99.8 1.6E-18 5.6E-23 120.3 9.1 74 206-279 7-80 (89)
82 2cpz_A CUG triplet repeat RNA- 99.8 2.2E-18 7.4E-23 130.7 10.8 86 3-88 21-109 (115)
83 2dnm_A SRP46 splicing factor; 99.8 1.9E-18 6.7E-23 128.2 10.2 85 3-87 9-96 (103)
84 2cq1_A PTB-like protein L; RRM 99.8 8.3E-18 2.8E-22 123.1 13.3 82 203-284 12-95 (101)
85 2cqb_A Peptidyl-prolyl CIS-tra 99.8 2.6E-18 8.8E-23 127.4 10.8 86 3-88 8-96 (102)
86 1x4d_A Matrin 3; structural ge 99.8 1.6E-18 5.4E-23 126.8 9.3 80 3-85 11-93 (102)
87 2cqc_A Arginine/serine-rich sp 99.8 5E-18 1.7E-22 124.1 11.9 87 88-174 8-94 (95)
88 2x1f_A MRNA 3'-END-processing 99.8 2.5E-18 8.4E-23 125.9 10.1 80 6-85 1-83 (96)
89 2e5h_A Zinc finger CCHC-type a 99.8 3.5E-18 1.2E-22 124.7 10.9 80 3-82 12-94 (94)
90 1x5t_A Splicing factor 3B subu 99.8 2.7E-18 9.3E-23 125.7 10.3 84 4-87 2-89 (96)
91 1x5s_A Cold-inducible RNA-bind 99.8 2.8E-18 9.7E-23 127.1 10.5 85 3-87 8-95 (102)
92 2cpf_A RNA binding motif prote 99.8 1.9E-18 6.7E-23 127.0 9.5 84 4-87 2-91 (98)
93 2d9p_A Polyadenylate-binding p 99.8 3.2E-18 1.1E-22 127.1 10.7 86 3-88 11-97 (103)
94 2cqb_A Peptidyl-prolyl CIS-tra 99.8 4.5E-18 1.5E-22 126.0 11.5 87 91-177 8-94 (102)
95 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.8E-18 6.3E-23 124.2 9.1 80 5-84 4-86 (87)
96 2do4_A Squamous cell carcinoma 99.8 8.5E-18 2.9E-22 124.0 12.8 85 91-176 13-97 (100)
97 2dnm_A SRP46 splicing factor; 99.8 3.6E-18 1.2E-22 126.8 10.8 89 89-177 7-95 (103)
98 1x5u_A Splicing factor 3B subu 99.8 4E-18 1.4E-22 127.1 11.0 86 2-87 10-98 (105)
99 2cq0_A Eukaryotic translation 99.8 2.8E-18 9.5E-23 127.4 10.1 84 3-86 11-97 (103)
100 1x5u_A Splicing factor 3B subu 99.8 5.6E-18 1.9E-22 126.3 11.7 89 89-177 9-97 (105)
101 2dgo_A Cytotoxic granule-assoc 99.8 4.6E-18 1.6E-22 128.9 11.4 85 3-87 11-98 (115)
102 2err_A Ataxin-2-binding protei 99.8 3.1E-18 1.1E-22 128.2 10.3 82 3-84 25-107 (109)
103 2cpz_A CUG triplet repeat RNA- 99.8 5.1E-18 1.7E-22 128.7 11.5 88 90-177 20-107 (115)
104 2dnq_A RNA-binding protein 4B; 99.8 5.9E-18 2E-22 122.2 11.2 80 3-87 4-83 (90)
105 2x1f_A MRNA 3'-END-processing 99.8 4.8E-18 1.7E-22 124.3 10.8 83 95-177 2-84 (96)
106 4a8x_A RNA-binding protein wit 99.8 4.1E-18 1.4E-22 122.6 10.3 81 5-85 2-86 (88)
107 2e5h_A Zinc finger CCHC-type a 99.8 1E-17 3.5E-22 122.2 12.4 83 91-173 12-94 (94)
108 1x5t_A Splicing factor 3B subu 99.8 4.3E-18 1.5E-22 124.7 10.3 85 93-177 3-88 (96)
109 1wex_A Hypothetical protein (r 99.8 9.1E-18 3.1E-22 123.7 12.1 81 203-283 12-94 (104)
110 1x4h_A RNA-binding protein 28; 99.8 1E-17 3.5E-22 126.2 12.7 89 89-177 9-103 (111)
111 2dnh_A Bruno-like 5, RNA bindi 99.8 4.8E-18 1.7E-22 126.6 10.7 85 3-87 11-100 (105)
112 2a3j_A U1 small nuclear ribonu 99.8 3.2E-18 1.1E-22 130.9 9.8 83 3-85 25-111 (127)
113 3mdf_A Peptidyl-prolyl CIS-tra 99.8 3.9E-18 1.3E-22 121.9 9.7 82 92-173 4-85 (85)
114 2cph_A RNA binding motif prote 99.8 6.6E-18 2.3E-22 126.3 11.3 85 3-87 11-100 (107)
115 2ywk_A Putative RNA-binding pr 99.8 2.8E-18 9.5E-23 125.4 9.0 81 3-83 12-94 (95)
116 1x4h_A RNA-binding protein 28; 99.8 7.5E-18 2.6E-22 126.9 11.7 86 3-88 11-105 (111)
117 2dgv_A HnRNP M, heterogeneous 99.8 3.7E-18 1.3E-22 124.0 9.5 84 3-86 4-88 (92)
118 2ad9_A Polypyrimidine tract-bi 99.8 5.8E-18 2E-22 126.9 10.8 82 203-284 28-111 (119)
119 3p5t_L Cleavage and polyadenyl 99.8 8.9E-19 3E-23 126.5 6.2 82 96-177 2-85 (90)
120 2jrs_A RNA-binding protein 39; 99.8 7.3E-18 2.5E-22 125.8 11.3 88 89-176 20-107 (108)
121 2do0_A HnRNP M, heterogeneous 99.8 9.3E-18 3.2E-22 127.1 12.0 84 2-85 10-95 (114)
122 2cqc_A Arginine/serine-rich sp 99.8 3.4E-18 1.2E-22 125.0 9.2 81 3-83 11-94 (95)
123 2cph_A RNA binding motif prote 99.7 1.2E-17 3.9E-22 125.0 12.0 89 89-177 9-99 (107)
124 1why_A Hypothetical protein ri 99.7 6.6E-18 2.3E-22 123.8 10.5 80 3-85 13-94 (97)
125 3md1_A Nuclear and cytoplasmic 99.7 5.6E-18 1.9E-22 120.5 9.6 78 7-84 1-81 (83)
126 2la6_A RNA-binding protein FUS 99.7 1E-17 3.6E-22 123.3 11.4 84 90-173 8-99 (99)
127 2kxn_B Transformer-2 protein h 99.7 6.4E-18 2.2E-22 130.3 10.7 88 89-176 40-127 (129)
128 2d9p_A Polyadenylate-binding p 99.7 1.4E-17 4.9E-22 123.5 12.1 88 89-178 9-96 (103)
129 1wi8_A EIF-4B, eukaryotic tran 99.7 2.1E-17 7.1E-22 122.8 12.8 88 89-178 9-97 (104)
130 3ns6_A Eukaryotic translation 99.7 2.6E-18 8.8E-23 126.5 7.8 82 93-174 4-92 (100)
131 2dgp_A Bruno-like 4, RNA bindi 99.7 7.2E-18 2.4E-22 125.9 10.3 85 3-87 9-99 (106)
132 2dnh_A Bruno-like 5, RNA bindi 99.7 1.9E-17 6.5E-22 123.3 12.5 87 91-178 11-100 (105)
133 2kxn_B Transformer-2 protein h 99.7 4.9E-18 1.7E-22 130.9 9.5 83 3-85 42-127 (129)
134 2dng_A Eukaryotic translation 99.7 2.4E-17 8.1E-22 122.3 12.8 86 90-177 10-95 (103)
135 1x5s_A Cold-inducible RNA-bind 99.7 6.7E-18 2.3E-22 125.1 9.9 87 91-177 8-94 (102)
136 1p27_B RNA-binding protein 8A; 99.7 7.4E-18 2.5E-22 125.8 10.1 86 91-176 19-104 (106)
137 2cpe_A RNA-binding protein EWS 99.7 1.1E-17 3.8E-22 126.4 11.1 85 3-87 11-106 (113)
138 1nu4_A U1A RNA binding domain; 99.7 3E-18 1E-22 125.8 7.8 84 2-85 3-90 (97)
139 2khc_A Testis-specific RNP-typ 99.7 1.1E-17 3.6E-22 127.6 11.0 84 90-173 35-118 (118)
140 2kvi_A Nuclear polyadenylated 99.7 5.5E-18 1.9E-22 123.9 9.0 82 1-87 4-86 (96)
141 2jrs_A RNA-binding protein 39; 99.7 4.9E-18 1.7E-22 126.8 8.9 83 3-85 22-107 (108)
142 1x4c_A Splicing factor, argini 99.7 1.8E-17 6.1E-22 124.0 12.0 79 5-87 13-96 (108)
143 1x4g_A Nucleolysin TIAR; struc 99.7 1.2E-17 4E-22 125.3 10.9 82 3-87 21-102 (109)
144 2fy1_A RNA-binding motif prote 99.7 1.5E-17 5.2E-22 125.9 11.6 85 92-177 4-88 (116)
145 1p27_B RNA-binding protein 8A; 99.7 5E-18 1.7E-22 126.7 8.8 81 4-84 20-103 (106)
146 2cpj_A Non-POU domain-containi 99.7 1.4E-17 4.8E-22 122.6 11.1 81 3-86 11-91 (99)
147 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.6E-22 124.7 11.0 88 89-177 19-106 (109)
148 1s79_A Lupus LA protein; RRM, 99.7 4.8E-18 1.6E-22 125.3 8.3 80 3-83 7-88 (103)
149 2khc_A Testis-specific RNP-typ 99.7 6E-18 2E-22 129.0 9.1 80 3-82 36-118 (118)
150 3ns6_A Eukaryotic translation 99.7 4.7E-18 1.6E-22 125.1 8.2 81 3-83 2-92 (100)
151 2cpe_A RNA-binding protein EWS 99.7 1.9E-17 6.3E-22 125.2 11.7 88 90-177 10-105 (113)
152 2cpi_A CCR4-NOT transcription 99.7 9E-18 3.1E-22 126.2 9.8 83 3-85 11-102 (111)
153 2dgp_A Bruno-like 4, RNA bindi 99.7 1.2E-17 4E-22 124.7 10.4 88 90-177 8-98 (106)
154 2div_A TRNA selenocysteine ass 99.7 6.4E-18 2.2E-22 124.5 8.8 83 3-85 5-95 (99)
155 2la4_A Nuclear and cytoplasmic 99.7 8.7E-18 3E-22 124.2 9.5 77 4-83 24-100 (101)
156 2dgt_A RNA-binding protein 30; 99.7 2.3E-17 7.9E-22 119.6 11.5 80 3-87 6-85 (92)
157 1oo0_B CG8781-PA, drosophila Y 99.7 1.4E-17 4.7E-22 125.2 10.7 86 91-176 22-107 (110)
158 2dgu_A Heterogeneous nuclear r 99.7 2.3E-17 7.8E-22 122.3 11.7 80 3-87 7-86 (103)
159 2hvz_A Splicing factor, argini 99.7 5.8E-18 2E-22 125.2 8.4 77 96-177 1-77 (101)
160 1x4f_A Matrin 3; structural ge 99.7 8.6E-18 2.9E-22 124.6 9.3 81 203-283 22-105 (112)
161 3p5t_L Cleavage and polyadenyl 99.7 1.7E-18 5.9E-23 125.0 5.4 79 7-85 1-84 (90)
162 2dhg_A TRNA selenocysteine ass 99.7 9E-18 3.1E-22 124.9 9.4 85 3-87 5-93 (104)
163 2rs2_A Musashi-1, RNA-binding 99.7 1.3E-17 4.4E-22 124.8 10.3 84 2-86 20-106 (109)
164 2cpf_A RNA binding motif prote 99.7 8.3E-18 2.8E-22 123.6 9.1 85 93-177 3-90 (98)
165 2cqd_A RNA-binding region cont 99.7 4.3E-17 1.5E-21 123.7 13.3 87 89-176 11-97 (116)
166 3s7r_A Heterogeneous nuclear r 99.7 1.7E-17 5.8E-22 119.0 10.5 82 90-172 6-87 (87)
167 2dh8_A DAZ-associated protein 99.7 7.1E-18 2.4E-22 125.7 8.8 85 2-87 11-98 (105)
168 1u6f_A Tcubp1, RNA-binding pro 99.7 1.4E-17 4.7E-22 130.9 10.8 85 3-87 38-125 (139)
169 2div_A TRNA selenocysteine ass 99.7 9.9E-18 3.4E-22 123.5 9.3 86 91-176 5-95 (99)
170 2cqd_A RNA-binding region cont 99.7 1.6E-17 5.3E-22 126.2 10.7 82 3-85 13-97 (116)
171 2dnp_A RNA-binding protein 14; 99.7 2.1E-17 7E-22 119.4 10.8 79 3-86 5-83 (90)
172 2cqp_A RNA-binding protein 12; 99.7 1.5E-17 5E-22 122.3 10.1 85 91-175 11-95 (98)
173 2jvo_A Nucleolar protein 3; nu 99.7 1.5E-17 5E-22 124.1 10.3 79 3-86 27-105 (108)
174 2xnq_A Nuclear polyadenylated 99.7 2.1E-17 7.3E-22 120.8 10.8 77 3-84 18-95 (97)
175 1wi8_A EIF-4B, eukaryotic tran 99.7 1.7E-17 5.8E-22 123.3 10.4 82 4-87 12-97 (104)
176 2jvr_A Nucleolar protein 3; RN 99.7 7E-18 2.4E-22 125.6 8.3 79 5-84 26-105 (111)
177 1oo0_B CG8781-PA, drosophila Y 99.7 1.1E-17 3.8E-22 125.8 9.5 82 4-85 23-107 (110)
178 1u6f_A Tcubp1, RNA-binding pro 99.7 2E-17 6.9E-22 129.9 11.2 89 90-178 37-125 (139)
179 3ulh_A THO complex subunit 4; 99.7 1.4E-17 4.8E-22 124.5 9.8 79 4-82 26-106 (107)
180 2cq3_A RNA-binding protein 9; 99.7 7.6E-17 2.6E-21 119.6 13.6 87 89-177 9-95 (103)
181 1x4g_A Nucleolysin TIAR; struc 99.7 2.6E-17 9E-22 123.4 11.2 84 200-283 19-102 (109)
182 2cpj_A Non-POU domain-containi 99.7 3.1E-17 1.1E-21 120.7 11.3 81 203-283 12-92 (99)
183 3ucg_A Polyadenylate-binding p 99.7 1.7E-17 5.7E-22 119.7 9.6 80 95-175 6-85 (89)
184 1x4e_A RNA binding motif, sing 99.7 6.6E-18 2.3E-22 120.6 7.2 81 93-173 3-83 (85)
185 1x4e_A RNA binding motif, sing 99.7 5E-18 1.7E-22 121.3 6.6 79 4-82 2-83 (85)
186 1sjr_A Polypyrimidine tract-bi 99.7 1.7E-17 5.7E-22 130.8 10.0 82 5-87 44-127 (164)
187 2la6_A RNA-binding protein FUS 99.7 1.6E-17 5.6E-22 122.2 9.4 80 3-82 9-99 (99)
188 1x4f_A Matrin 3; structural ge 99.7 9.7E-18 3.3E-22 124.3 8.1 81 3-86 21-104 (112)
189 2dh8_A DAZ-associated protein 99.7 2.2E-17 7.5E-22 123.0 9.9 87 90-177 11-97 (105)
190 1s79_A Lupus LA protein; RRM, 99.7 1.2E-17 4.1E-22 123.1 8.3 82 91-174 7-88 (103)
191 2ywk_A Putative RNA-binding pr 99.7 2.3E-17 8E-22 120.5 9.9 83 91-174 12-94 (95)
192 2dhg_A TRNA selenocysteine ass 99.7 1.8E-17 6.3E-22 123.2 9.4 86 91-177 5-92 (104)
193 1why_A Hypothetical protein ri 99.7 3.6E-17 1.2E-21 119.8 10.8 80 203-282 14-95 (97)
194 2e5j_A Methenyltetrahydrofolat 99.7 2E-17 6.9E-22 121.2 9.4 80 4-85 16-95 (97)
195 4a8x_A RNA-binding protein wit 99.7 2E-17 6.9E-22 119.0 9.3 83 94-176 3-86 (88)
196 2do0_A HnRNP M, heterogeneous 99.7 1E-16 3.5E-21 121.3 13.6 81 203-283 12-97 (114)
197 3ulh_A THO complex subunit 4; 99.7 3.6E-17 1.2E-21 122.3 11.0 83 90-173 24-106 (107)
198 2dgx_A KIAA0430 protein; RRM d 99.7 4.1E-17 1.4E-21 119.2 11.0 79 204-282 7-92 (96)
199 2diu_A KIAA0430 protein; struc 99.7 4.2E-17 1.4E-21 114.2 10.5 78 4-88 5-88 (96)
200 2cqi_A Nucleolysin TIAR; RNA r 99.7 7.6E-17 2.6E-21 119.6 12.7 86 90-177 10-95 (103)
201 3s7r_A Heterogeneous nuclear r 99.7 2.4E-17 8.2E-22 118.2 9.4 78 3-81 7-87 (87)
202 2m2b_A RNA-binding protein 10; 99.7 1.4E-17 4.6E-22 129.2 8.7 86 91-177 19-110 (131)
203 2ek1_A RNA-binding protein 12; 99.7 1.3E-17 4.6E-22 121.8 8.2 82 92-173 12-93 (95)
204 2dgu_A Heterogeneous nuclear r 99.7 1E-16 3.6E-21 118.8 13.1 80 204-285 9-88 (103)
205 2ytc_A PRE-mRNA-splicing facto 99.7 2.2E-17 7.6E-22 117.9 9.1 77 3-82 8-85 (85)
206 2dng_A Eukaryotic translation 99.7 3E-17 1E-21 121.7 10.0 83 3-87 11-96 (103)
207 3n9u_C Cleavage and polyadenyl 99.7 1.9E-17 6.5E-22 131.8 9.5 82 94-175 54-137 (156)
208 2ytc_A PRE-mRNA-splicing facto 99.7 3.7E-17 1.3E-21 116.7 10.1 76 203-278 9-85 (85)
209 2kt5_A RNA and export factor-b 99.7 6.6E-17 2.3E-21 124.2 12.2 83 4-86 32-116 (124)
210 2j76_E EIF-4B, EIF4B, eukaryot 99.7 1.4E-17 4.8E-22 122.7 8.0 84 90-175 14-98 (100)
211 1p1t_A Cleavage stimulation fa 99.7 7.4E-18 2.5E-22 125.4 6.6 82 3-84 4-88 (104)
212 2nlw_A Eukaryotic translation 99.7 2.5E-17 8.6E-22 122.4 9.4 81 4-84 12-100 (105)
213 3lqv_A PRE-mRNA branch site pr 99.7 7.7E-18 2.6E-22 127.7 6.8 105 92-232 5-109 (115)
214 3pgw_S U1-70K; protein-RNA com 99.7 3.5E-18 1.2E-22 158.8 5.9 151 23-176 8-183 (437)
215 2cqp_A RNA-binding protein 12; 99.7 1.4E-17 4.9E-22 122.4 8.0 81 4-84 12-95 (98)
216 2fc9_A NCL protein; structure 99.7 3.1E-17 1.1E-21 121.2 9.8 81 3-86 11-93 (101)
217 2dgw_A Probable RNA-binding pr 99.7 7.4E-17 2.5E-21 116.7 11.6 83 91-176 6-88 (91)
218 3zzy_A Polypyrimidine tract-bi 99.7 3.8E-17 1.3E-21 123.9 10.4 82 6-89 27-111 (130)
219 3ucg_A Polyadenylate-binding p 99.7 3.2E-17 1.1E-21 118.2 9.6 79 5-84 4-85 (89)
220 2ek1_A RNA-binding protein 12; 99.7 8.4E-18 2.9E-22 122.9 6.5 80 4-83 12-94 (95)
221 2cpd_A Apobec-1 stimulating pr 99.7 8.9E-17 3E-21 118.3 12.0 78 4-86 12-91 (99)
222 2dnq_A RNA-binding protein 4B; 99.7 8.3E-17 2.8E-21 116.2 11.6 79 203-283 5-83 (90)
223 2m2b_A RNA-binding protein 10; 99.7 1.7E-17 5.9E-22 128.6 8.3 84 3-87 19-111 (131)
224 2dis_A Unnamed protein product 99.7 3.1E-17 1.1E-21 123.1 9.5 86 1-86 2-94 (109)
225 2cq4_A RNA binding motif prote 99.7 2.3E-17 7.8E-22 124.8 8.8 81 93-174 23-103 (114)
226 1x4c_A Splicing factor, argini 99.7 1.6E-16 5.5E-21 118.7 13.3 79 204-283 13-96 (108)
227 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.7E-21 118.7 12.3 87 89-177 9-95 (103)
228 1x4b_A Heterogeneous nuclear r 99.7 3.3E-17 1.1E-21 124.3 9.7 84 93-177 25-108 (116)
229 2la4_A Nuclear and cytoplasmic 99.7 2.7E-17 9.3E-22 121.5 8.7 80 201-280 22-101 (101)
230 3ex7_B RNA-binding protein 8A; 99.7 2.9E-17 1E-21 126.7 9.3 84 3-86 18-104 (126)
231 2cqh_A IGF-II mRNA-binding pro 99.7 3.1E-17 1.1E-21 119.2 8.9 81 3-87 4-86 (93)
232 2dgw_A Probable RNA-binding pr 99.7 4.9E-17 1.7E-21 117.7 9.9 80 3-84 6-87 (91)
233 2kt5_A RNA and export factor-b 99.7 1.4E-16 4.8E-21 122.4 13.0 85 91-176 31-115 (124)
234 2dgv_A HnRNP M, heterogeneous 99.7 5.7E-17 1.9E-21 117.6 10.2 83 92-176 5-87 (92)
235 2cpi_A CCR4-NOT transcription 99.7 8.6E-17 3E-21 120.8 11.5 86 92-177 12-103 (111)
236 2mss_A Protein (musashi1); RNA 99.7 1.3E-17 4.6E-22 115.9 6.5 75 97-172 1-75 (75)
237 1h2v_Z 20 kDa nuclear CAP bind 99.7 5.5E-17 1.9E-21 130.0 10.9 83 4-86 36-121 (156)
238 3ex7_B RNA-binding protein 8A; 99.7 4.9E-17 1.7E-21 125.4 10.2 88 91-178 18-105 (126)
239 1h2v_Z 20 kDa nuclear CAP bind 99.7 7.4E-17 2.5E-21 129.2 11.6 87 91-177 35-121 (156)
240 1wg5_A Heterogeneous nuclear r 99.7 8.1E-17 2.8E-21 119.5 10.9 85 90-176 10-95 (104)
241 1wf1_A RNA-binding protein RAL 99.7 6.8E-17 2.3E-21 121.3 10.6 76 5-85 25-101 (110)
242 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.6E-17 5.5E-22 116.2 6.6 76 96-172 1-76 (77)
243 2cqg_A TDP-43, TAR DNA-binding 99.7 9.6E-17 3.3E-21 119.0 11.1 83 3-87 11-96 (103)
244 2lea_A Serine/arginine-rich sp 99.7 1.9E-17 6.4E-22 128.8 7.5 84 3-86 43-129 (135)
245 3n9u_C Cleavage and polyadenyl 99.7 2.8E-17 9.5E-22 130.8 8.6 78 6-83 54-136 (156)
246 1p1t_A Cleavage stimulation fa 99.7 2.2E-17 7.5E-22 122.8 7.6 85 93-177 6-90 (104)
247 1fjc_A Nucleolin RBD2, protein 99.7 2.3E-17 7.9E-22 120.7 7.5 82 3-86 12-93 (96)
248 2cq4_A RNA binding motif prote 99.7 1.8E-17 6.2E-22 125.4 7.2 78 5-83 23-103 (114)
249 2err_A Ataxin-2-binding protei 99.7 6.6E-17 2.3E-21 121.0 10.1 86 88-175 22-107 (109)
250 2cpy_A RNA-binding protein 12; 99.7 6.6E-17 2.3E-21 122.1 10.1 84 90-175 10-94 (114)
251 1x5o_A RNA binding motif, sing 99.7 5.7E-17 1.9E-21 122.7 9.7 82 3-84 21-112 (114)
252 1x4a_A Splicing factor, argini 99.7 2.6E-16 8.8E-21 118.0 13.2 80 203-282 19-101 (109)
253 2cq2_A Hypothetical protein LO 99.7 5.9E-17 2E-21 120.0 9.4 80 203-282 22-108 (114)
254 2cpy_A RNA-binding protein 12; 99.7 3.4E-17 1.2E-21 123.7 8.3 80 3-83 11-93 (114)
255 2dis_A Unnamed protein product 99.7 6.5E-17 2.2E-21 121.3 9.8 85 93-177 6-94 (109)
256 1uaw_A Mouse-musashi-1; RNP-ty 99.7 1.7E-17 5.8E-22 116.1 6.2 73 8-81 1-76 (77)
257 2cpx_A Hypothetical protein FL 99.7 6.9E-17 2.4E-21 122.4 10.1 83 4-87 22-108 (115)
258 1whx_A Hypothetical protein ri 99.7 3.9E-17 1.3E-21 122.5 8.2 78 4-84 7-84 (111)
259 2dgt_A RNA-binding protein 30; 99.7 2.4E-16 8.1E-21 114.2 12.1 79 203-283 7-85 (92)
260 2j76_E EIF-4B, EIF4B, eukaryot 99.7 2E-17 6.9E-22 121.8 6.5 79 4-84 16-98 (100)
261 1wg1_A KIAA1579 protein, homol 99.7 1.1E-16 3.6E-21 115.0 10.0 77 4-84 2-78 (88)
262 2db1_A Heterogeneous nuclear r 99.7 4.1E-17 1.4E-21 123.8 8.1 79 4-83 14-97 (118)
263 2mss_A Protein (musashi1); RNA 99.7 2.1E-17 7.1E-22 115.0 5.9 72 9-81 1-75 (75)
264 2krb_A Eukaryotic translation 99.7 2.2E-17 7.6E-22 116.6 6.1 73 7-79 1-81 (81)
265 1wez_A HnRNP H', FTP-3, hetero 99.7 8.7E-17 3E-21 118.5 9.5 83 91-176 11-93 (102)
266 1wg5_A Heterogeneous nuclear r 99.7 8.3E-17 2.8E-21 119.4 9.4 81 4-85 12-95 (104)
267 2hgl_A HNRPF protein, heteroge 99.7 3.7E-17 1.2E-21 126.4 7.6 79 3-82 40-123 (136)
268 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 7.7E-17 2.6E-21 126.8 9.6 79 3-81 59-140 (140)
269 2e5g_A U6 snRNA-specific termi 99.7 1.7E-16 5.8E-21 115.5 10.8 80 4-86 5-84 (94)
270 2cq2_A Hypothetical protein LO 99.7 8.9E-17 3E-21 119.1 9.3 79 3-84 21-106 (114)
271 2cqh_A IGF-II mRNA-binding pro 99.7 6.5E-17 2.2E-21 117.5 8.4 80 204-283 6-86 (93)
272 1wez_A HnRNP H', FTP-3, hetero 99.7 4.5E-17 1.5E-21 120.0 7.6 81 3-85 11-93 (102)
273 2dnn_A RNA-binding protein 12; 99.7 1.8E-16 6.1E-21 117.8 10.8 80 92-174 13-92 (109)
274 2hgl_A HNRPF protein, heteroge 99.7 6.2E-17 2.1E-21 125.2 8.5 82 91-174 40-124 (136)
275 2nlw_A Eukaryotic translation 99.7 7.8E-17 2.7E-21 119.8 8.8 84 90-175 10-100 (105)
276 2ki2_A SS-DNA binding protein 99.7 1E-17 3.5E-22 121.1 3.9 80 96-176 2-81 (90)
277 2fc8_A NCL protein; structure 99.7 8E-17 2.7E-21 119.3 8.8 82 3-87 11-95 (102)
278 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.6E-16 5.4E-21 125.0 11.1 83 90-172 58-140 (140)
279 1whx_A Hypothetical protein ri 99.7 1.1E-16 3.6E-21 120.1 9.5 77 206-282 10-86 (111)
280 2db1_A Heterogeneous nuclear r 99.7 1.1E-16 3.9E-21 121.4 9.7 83 91-175 13-98 (118)
281 2fc9_A NCL protein; structure 99.7 3.5E-16 1.2E-20 115.5 12.1 83 91-177 11-93 (101)
282 1x4b_A Heterogeneous nuclear r 99.7 1.4E-16 4.9E-21 120.8 10.2 81 6-87 26-109 (116)
283 2jwn_A Embryonic polyadenylate 99.7 8.6E-17 2.9E-21 123.6 9.1 83 94-177 35-117 (124)
284 1x5o_A RNA binding motif, sing 99.7 2.7E-16 9.2E-21 118.9 11.5 84 91-175 21-112 (114)
285 2ki2_A SS-DNA binding protein 99.7 1.4E-17 4.7E-22 120.4 4.1 77 8-85 2-81 (90)
286 2hgn_A Heterogeneous nuclear r 99.7 2.1E-17 7.3E-22 128.2 5.2 123 47-176 2-124 (139)
287 1rk8_A CG8781-PA, CG8781-PA pr 99.7 1.4E-16 4.7E-21 128.8 10.2 137 142-283 11-155 (165)
288 2dnp_A RNA-binding protein 14; 99.7 3E-16 1E-20 113.2 11.0 78 203-282 6-83 (90)
289 1x5p_A Negative elongation fac 99.7 5.2E-16 1.8E-20 113.6 12.2 78 4-86 12-89 (97)
290 2jvr_A Nucleolar protein 3; RN 99.7 1.1E-16 3.7E-21 119.1 8.6 80 93-176 26-106 (111)
291 1x5p_A Negative elongation fac 99.7 8.1E-16 2.8E-20 112.6 13.1 79 203-283 12-90 (97)
292 2jvo_A Nucleolar protein 3; nu 99.7 2.4E-16 8.3E-21 117.5 10.4 79 202-282 27-105 (108)
293 1fj7_A Nucleolin RBD1, protein 99.7 2.5E-17 8.6E-22 121.7 4.9 82 3-86 13-97 (101)
294 2lmi_A GRSF-1, G-rich sequence 99.7 7.4E-17 2.5E-21 120.3 7.4 83 90-174 6-91 (107)
295 3egn_A RNA-binding protein 40; 99.7 1.4E-16 4.9E-21 125.6 9.4 83 4-86 42-132 (143)
296 2xnq_A Nuclear polyadenylated 99.7 4.1E-16 1.4E-20 113.9 11.1 77 202-280 18-95 (97)
297 2fc8_A NCL protein; structure 99.7 4.8E-16 1.6E-20 115.0 11.6 86 89-177 9-94 (102)
298 2jwn_A Embryonic polyadenylate 99.7 1.7E-16 5.8E-21 122.0 9.4 79 6-85 35-116 (124)
299 1wel_A RNA-binding protein 12; 99.7 5.7E-17 1.9E-21 124.5 6.6 84 91-175 21-104 (124)
300 2e5i_A Heterogeneous nuclear r 99.7 4E-16 1.4E-20 118.0 11.0 75 9-86 27-104 (124)
301 2dnn_A RNA-binding protein 12; 99.7 1.2E-16 4E-21 118.8 7.9 76 6-83 15-92 (109)
302 2cpd_A Apobec-1 stimulating pr 99.7 9.9E-16 3.4E-20 112.6 12.8 78 203-282 12-91 (99)
303 2e44_A Insulin-like growth fac 99.7 2.7E-16 9.4E-21 115.0 9.6 79 5-84 13-92 (96)
304 2lmi_A GRSF-1, G-rich sequence 99.7 6.6E-17 2.3E-21 120.6 6.3 80 3-83 7-91 (107)
305 2a3j_A U1 small nuclear ribonu 99.7 2.4E-16 8.2E-21 120.4 9.2 82 92-176 26-111 (127)
306 3beg_B Splicing factor, argini 99.7 2E-16 6.8E-21 119.5 8.6 76 5-84 14-94 (115)
307 1fj7_A Nucleolin RBD1, protein 99.7 3.3E-17 1.1E-21 121.0 4.2 84 91-176 13-96 (101)
308 2krb_A Eukaryotic translation 99.7 6.9E-17 2.4E-21 114.0 5.6 73 95-169 1-80 (81)
309 1wg1_A KIAA1579 protein, homol 99.7 6.9E-16 2.4E-20 110.7 10.8 77 205-282 4-80 (88)
310 2e5j_A Methenyltetrahydrofolat 99.7 5.1E-16 1.8E-20 113.6 10.1 82 90-176 14-95 (97)
311 1iqt_A AUF1, heterogeneous nuc 99.7 5.1E-17 1.7E-21 113.0 4.3 75 97-172 1-75 (75)
312 2kvi_A Nuclear polyadenylated 99.7 2.7E-16 9.3E-21 114.8 8.4 79 203-283 7-86 (96)
313 1wel_A RNA-binding protein 12; 99.7 7.5E-17 2.6E-21 123.8 5.2 79 4-83 22-103 (124)
314 2cpx_A Hypothetical protein FL 99.6 1.1E-16 3.8E-21 121.3 5.9 87 91-177 21-107 (115)
315 3d2w_A TAR DNA-binding protein 99.6 4.9E-16 1.7E-20 111.4 9.0 76 3-84 7-84 (89)
316 1nu4_A U1A RNA binding domain; 99.6 6.4E-16 2.2E-20 113.2 9.7 79 203-281 5-90 (97)
317 2j8a_A Histone-lysine N-methyl 99.6 2.3E-16 7.8E-21 117.0 7.1 79 96-174 3-95 (136)
318 3q2s_C Cleavage and polyadenyl 99.6 1.9E-16 6.3E-21 134.6 7.7 81 94-174 67-149 (229)
319 3zzy_A Polypyrimidine tract-bi 99.6 1.3E-15 4.6E-20 115.4 11.5 79 207-285 29-111 (130)
320 1iqt_A AUF1, heterogeneous nuc 99.6 9.5E-17 3.3E-21 111.6 4.8 72 9-81 1-75 (75)
321 2lcw_A RNA-binding protein FUS 99.5 1.1E-17 3.9E-22 126.9 0.0 84 3-86 3-97 (116)
322 1wf1_A RNA-binding protein RAL 99.6 8.9E-16 3E-20 115.2 10.4 76 205-282 26-102 (110)
323 2e5i_A Heterogeneous nuclear r 99.6 1.5E-15 5E-20 114.9 11.5 76 208-283 27-105 (124)
324 2f3j_A RNA and export factor b 99.6 4.4E-16 1.5E-20 126.8 9.2 79 5-83 86-166 (177)
325 2hgn_A Heterogeneous nuclear r 99.6 1.1E-16 3.6E-21 124.2 5.1 79 4-84 43-123 (139)
326 1wf0_A TDP-43, TAR DNA-binding 99.6 3E-16 1E-20 112.7 7.1 78 5-86 3-80 (88)
327 2diu_A KIAA0430 protein; struc 99.6 1.5E-15 5E-20 106.4 10.2 77 205-285 7-89 (96)
328 2dha_A FLJ20171 protein; RRM d 99.6 1.9E-16 6.6E-21 120.1 6.1 77 5-82 21-103 (123)
329 2hzc_A Splicing factor U2AF 65 99.6 3.6E-16 1.2E-20 112.1 7.2 73 4-80 3-86 (87)
330 3q2s_C Cleavage and polyadenyl 99.6 2.1E-16 7.2E-21 134.2 6.8 78 6-83 67-149 (229)
331 2xs2_A Deleted in azoospermia- 99.6 1.2E-16 4E-21 118.4 4.5 80 4-85 6-87 (102)
332 2dha_A FLJ20171 protein; RRM d 99.6 2.8E-16 9.4E-21 119.3 6.6 80 93-174 21-104 (123)
333 2lcw_A RNA-binding protein FUS 99.4 1.9E-17 6.6E-22 125.6 0.0 87 92-178 4-98 (116)
334 1fjc_A Nucleolin RBD2, protein 99.6 6.2E-16 2.1E-20 113.1 8.0 81 91-176 12-92 (96)
335 2hgm_A HNRPF protein, heteroge 99.6 5.1E-16 1.7E-20 118.0 7.6 81 91-174 38-120 (126)
336 2bz2_A Negative elongation fac 99.6 1.6E-15 5.4E-20 115.3 10.1 78 4-86 36-113 (121)
337 2hgm_A HNRPF protein, heteroge 99.6 5.1E-16 1.8E-20 118.0 7.1 78 4-83 39-120 (126)
338 2xs2_A Deleted in azoospermia- 99.6 2.8E-16 9.4E-21 116.3 5.5 82 92-176 6-87 (102)
339 1sjr_A Polypyrimidine tract-bi 99.6 1.9E-15 6.5E-20 119.0 10.5 82 91-176 42-125 (164)
340 3pgw_S U1-70K; protein-RNA com 99.6 2.8E-16 9.4E-21 146.1 6.6 78 205-282 101-184 (437)
341 2f3j_A RNA and export factor b 99.6 1.4E-15 4.7E-20 123.8 9.6 84 91-175 84-167 (177)
342 2e5g_A U6 snRNA-specific termi 99.6 2.9E-15 1E-19 108.9 10.1 79 92-176 5-83 (94)
343 3beg_B Splicing factor, argini 99.6 1.7E-15 5.9E-20 114.4 8.5 75 205-280 15-94 (115)
344 2dit_A HIV TAT specific factor 99.6 7.9E-15 2.7E-19 110.2 12.1 83 3-86 11-104 (112)
345 2e44_A Insulin-like growth fac 99.6 2.2E-15 7.7E-20 110.0 8.9 81 91-175 11-92 (96)
346 2voo_A Lupus LA protein; RNA-b 99.6 4.7E-15 1.6E-19 122.5 11.5 119 55-175 63-187 (193)
347 2bz2_A Negative elongation fac 99.6 3.3E-15 1.1E-19 113.6 9.5 77 204-282 37-113 (121)
348 2pe8_A Splicing factor 45; RRM 99.6 5.9E-15 2E-19 108.8 10.6 80 4-83 5-93 (105)
349 3d2w_A TAR DNA-binding protein 99.6 5.6E-15 1.9E-19 105.9 10.0 76 203-282 8-86 (89)
350 2hzc_A Splicing factor U2AF 65 99.6 3E-15 1E-19 107.2 8.3 71 205-276 5-86 (87)
351 2dnl_A Cytoplasmic polyadenyla 99.6 4.7E-15 1.6E-19 111.9 9.5 76 3-81 4-85 (114)
352 2dnl_A Cytoplasmic polyadenyla 99.6 9.9E-15 3.4E-19 110.1 10.3 79 92-173 5-86 (114)
353 3egn_A RNA-binding protein 40; 99.6 1.3E-15 4.5E-20 120.0 5.3 85 92-176 42-131 (143)
354 1wf0_A TDP-43, TAR DNA-binding 99.6 6.1E-15 2.1E-19 105.8 7.9 77 205-283 4-81 (88)
355 3u1l_A PRE-mRNA-splicing facto 99.6 5.7E-15 2E-19 124.5 8.9 80 203-282 131-231 (240)
356 3u1l_A PRE-mRNA-splicing facto 99.6 7.7E-15 2.6E-19 123.7 9.6 79 4-85 131-230 (240)
357 2pe8_A Splicing factor 45; RRM 99.6 2.6E-14 8.8E-19 105.4 10.3 82 93-174 6-93 (105)
358 2j8a_A Histone-lysine N-methyl 99.5 1.5E-14 5E-19 107.4 7.0 76 8-83 3-95 (136)
359 2voo_A Lupus LA protein; RNA-b 99.5 2.3E-14 8E-19 118.3 8.5 78 6-84 108-187 (193)
360 3v4m_A Splicing factor U2AF 65 99.5 4.7E-14 1.6E-18 104.0 8.6 78 5-82 3-95 (105)
361 2dit_A HIV TAT specific factor 99.5 5.2E-13 1.8E-17 100.2 11.7 81 203-283 12-105 (112)
362 3ue2_A Poly(U)-binding-splicin 99.5 2.3E-13 8E-18 102.2 9.0 78 5-82 18-107 (118)
363 2d9o_A DNAJ (HSP40) homolog, s 99.5 6.4E-13 2.2E-17 96.5 10.8 79 4-86 7-92 (100)
364 3v4m_A Splicing factor U2AF 65 99.4 6E-13 2E-17 98.1 9.3 80 94-173 4-95 (105)
365 1jmt_A Splicing factor U2AF 35 99.4 9.9E-14 3.4E-18 102.2 5.1 70 12-81 20-103 (104)
366 1jmt_A Splicing factor U2AF 35 99.4 1.3E-13 4.5E-18 101.5 4.3 72 100-172 20-103 (104)
367 3tht_A Alkylated DNA repair pr 99.4 8.5E-13 2.9E-17 117.4 9.3 77 3-82 14-97 (345)
368 3ue2_A Poly(U)-binding-splicin 99.4 1.2E-12 4.1E-17 98.3 8.7 80 94-173 19-107 (118)
369 3tht_A Alkylated DNA repair pr 99.4 9.4E-13 3.2E-17 117.1 9.3 76 203-278 15-97 (345)
370 3s6e_A RNA-binding protein 39; 99.4 2.6E-12 8.9E-17 95.7 9.3 77 5-82 5-91 (114)
371 3s6e_A RNA-binding protein 39; 99.3 7.3E-12 2.5E-16 93.3 10.0 77 205-281 6-94 (114)
372 2d9o_A DNAJ (HSP40) homolog, s 99.3 1.8E-11 6E-16 88.9 11.7 65 216-282 27-92 (100)
373 2dnr_A Synaptojanin-1; RRM dom 99.2 3E-11 1E-15 83.9 8.5 75 203-280 4-86 (91)
374 1owx_A Lupus LA protein, SS-B, 99.2 4.3E-11 1.5E-15 89.0 8.7 76 3-81 14-93 (121)
375 1owx_A Lupus LA protein, SS-B, 99.2 5.5E-11 1.9E-15 88.5 9.1 77 202-278 14-94 (121)
376 2dnr_A Synaptojanin-1; RRM dom 99.2 5.9E-11 2E-15 82.4 7.0 74 4-83 4-85 (91)
377 1ufw_A Synaptojanin 2; RNP dom 99.1 1.4E-10 4.9E-15 80.8 5.0 76 200-278 9-93 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.1 2.7E-10 9.3E-15 79.4 6.3 73 4-82 12-93 (95)
379 2l9w_A U4/U6 snRNA-associated- 98.8 4.5E-08 1.5E-12 69.4 8.5 71 206-276 21-96 (117)
380 3dxb_A Thioredoxin N-terminall 98.7 1.8E-08 6.1E-13 85.3 7.2 63 218-280 141-213 (222)
381 3dxb_A Thioredoxin N-terminall 98.7 2.1E-08 7.4E-13 84.7 7.6 66 108-173 142-211 (222)
382 2dhx_A Poly (ADP-ribose) polym 98.7 1.3E-07 4.5E-12 66.6 9.0 90 4-108 5-99 (104)
383 2l9w_A U4/U6 snRNA-associated- 98.4 1.3E-06 4.6E-11 61.9 8.6 72 5-79 19-95 (117)
384 1wey_A Calcipressin 1; structu 98.4 2E-06 6.9E-11 61.0 8.3 75 6-83 4-83 (104)
385 1wey_A Calcipressin 1; structu 98.2 8.2E-06 2.8E-10 57.9 9.1 75 207-281 6-85 (104)
386 2dhx_A Poly (ADP-ribose) polym 98.1 8E-05 2.7E-09 52.5 12.3 79 205-286 7-90 (104)
387 1uw4_A UPF3X; nonsense mediate 98.1 1.5E-05 5.2E-10 55.7 8.3 66 8-73 2-72 (91)
388 1wwh_A Nucleoporin 35, nucleop 97.8 0.00011 3.8E-09 53.7 7.8 73 5-82 22-95 (119)
389 1whv_A Poly(A)-specific ribonu 97.7 0.00013 4.4E-09 50.8 6.7 55 7-67 16-70 (100)
390 2l08_A Regulator of nonsense t 97.6 0.0001 3.6E-09 51.6 5.2 69 5-73 7-80 (97)
391 3ctr_A Poly(A)-specific ribonu 97.5 0.00012 4E-09 51.2 4.6 54 8-67 7-60 (101)
392 1uw4_A UPF3X; nonsense mediate 97.5 0.0006 2E-08 47.6 8.2 68 96-163 2-71 (91)
393 3p3d_A Nucleoporin 53; structu 97.4 0.00053 1.8E-08 50.8 7.3 76 5-82 5-97 (132)
394 1wwh_A Nucleoporin 35, nucleop 97.3 0.0017 5.7E-08 47.5 8.7 71 206-278 24-95 (119)
395 1whv_A Poly(A)-specific ribonu 97.1 0.0032 1.1E-07 43.9 8.0 58 92-158 13-70 (100)
396 3ctr_A Poly(A)-specific ribonu 96.7 0.0023 7.9E-08 44.7 5.0 54 207-263 7-60 (101)
397 3pq1_A Poly(A) RNA polymerase; 96.7 0.00072 2.5E-08 62.3 2.9 56 6-64 52-107 (464)
398 2l08_A Regulator of nonsense t 96.7 0.0029 9.8E-08 44.4 5.0 69 95-163 9-79 (97)
399 3p3d_A Nucleoporin 53; structu 96.1 0.0081 2.8E-07 44.5 4.8 71 207-279 8-98 (132)
400 3pq1_A Poly(A) RNA polymerase; 95.4 0.0074 2.5E-07 55.6 2.9 54 207-261 54-108 (464)
401 3d45_A Poly(A)-specific ribonu 90.5 0.47 1.6E-05 44.6 6.7 55 8-68 441-495 (507)
402 3d45_A Poly(A)-specific ribonu 83.2 3.6 0.00012 38.6 8.1 56 95-159 440-495 (507)
403 3iot_A Maltose-binding protein 71.5 0.88 3E-05 42.1 0.2 10 251-260 272-281 (449)
404 4eyt_A Telomerase associated p 70.6 21 0.00073 24.0 7.8 69 5-80 10-78 (129)
405 4e8u_A Putative uncharacterize 60.1 8.5 0.00029 29.9 3.7 50 9-59 14-75 (172)
406 2g0c_A ATP-dependent RNA helic 57.5 11 0.00038 24.6 3.6 67 9-82 2-75 (76)
407 3iot_A Maltose-binding protein 49.5 3.5 0.00012 38.0 0.0 9 6-14 5-13 (449)
408 3fry_A Probable copper-exporti 47.8 40 0.0014 21.3 5.1 56 6-65 5-60 (73)
409 2cu1_A Mitogen-activated prote 42.9 61 0.0021 22.5 5.3 67 211-280 21-88 (103)
410 4a4j_A Pacszia, cation-transpo 40.8 61 0.0021 19.8 5.6 55 8-65 4-61 (69)
411 3fry_A Probable copper-exporti 39.7 62 0.0021 20.3 5.1 54 207-261 7-60 (73)
412 2w7a_A LINE-1 ORF1P; RNA-bindi 38.7 77 0.0026 22.1 5.5 74 6-79 2-98 (100)
413 2inr_A DNA topoisomerase 4 sub 38.7 66 0.0022 29.9 6.6 95 7-117 275-374 (514)
414 3j21_T 50S ribosomal protein L 38.5 54 0.0018 22.2 4.5 55 11-65 26-82 (86)
415 3lpe_A Putative transcription 32.9 79 0.0027 21.5 4.9 24 45-68 49-72 (92)
416 4eyt_A Telomerase associated p 31.8 1.2E+02 0.004 20.4 8.0 59 93-159 10-68 (129)
417 3d53_A Inorganic pyrophosphata 29.6 65 0.0022 25.1 4.3 45 13-66 125-169 (173)
418 3ts2_A Protein LIN-28 homolog 29.1 17 0.00057 27.6 0.9 28 221-250 2-29 (148)
419 3dxs_X Copper-transporting ATP 28.5 1.1E+02 0.0037 19.0 7.1 55 8-65 4-62 (74)
420 3lpx_A GYRA, DNA gyrase, A sub 27.3 1.3E+02 0.0044 27.8 6.4 96 6-117 225-325 (500)
421 1qez_A Ppase, S-ppase, protein 26.8 78 0.0027 24.6 4.3 46 13-67 121-166 (173)
422 3ilw_A DNA gyrase subunit A; D 26.3 1.2E+02 0.0042 27.8 6.1 96 6-117 235-336 (470)
423 2lfv_A Protein DAMX; cell divi 30.9 15 0.00052 26.0 0.0 54 19-73 34-91 (106)
424 1vq8_S 50S ribosomal protein L 24.6 78 0.0027 21.3 3.5 54 11-64 25-80 (85)
425 3off_A LDLR chaperone BOCA; ME 22.9 1.8E+02 0.0063 19.7 5.7 60 4-68 8-74 (90)
426 1opz_A Potential copper-transp 22.9 1.3E+02 0.0046 18.2 7.1 61 2-65 2-66 (76)
427 2prd_A Pyrophosphate phosphohy 22.0 89 0.003 24.3 3.8 47 13-66 122-168 (174)
428 3u5e_X 60S ribosomal protein L 21.0 1.6E+02 0.0054 22.0 4.8 52 14-65 85-138 (142)
429 3ezj_A General secretion pathw 20.3 87 0.003 25.7 3.8 103 17-119 11-133 (241)
No 1
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=8.6e-47 Score=336.17 Aligned_cols=241 Identities=21% Similarity=0.354 Sum_probs=220.7
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
+++++|||+|||.++++++|+++|+.|| |.++++ ..++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~~~-- 93 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVHDLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQLQP-- 93 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHHHHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC--
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEecC--
Confidence 4689999999999999999999999999 999988 3467899999999999999999999999999999999864
Q ss_pred CCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCC
Q psy2618 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS 164 (390)
Q Consensus 85 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 164 (390)
..++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.+++..+.|
T Consensus 94 ---------~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g 164 (284)
T 3smz_A 94 ---------TDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP 164 (284)
T ss_dssp ---------CSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred ---------CCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC
Confidence 34789999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCC-cHHHHHhhhcCCCceeEEEEecC--
Q psy2618 165 RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDL-NEELVSKVFSPFGTIVDIRVFKE-- 241 (390)
Q Consensus 165 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~-~~~~l~~~f~~~g~v~~~~~~~~-- 241 (390)
+.|.|.++...... ......++|||+|||..+ ++++|+++|+.||.|.++.+.++
T Consensus 165 ~~i~v~~a~~~~~~----------------------~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~ 222 (284)
T 3smz_A 165 RTLYVHWTDAGQLT----------------------PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQD 222 (284)
T ss_dssp EECEEEECCGGGCC----------------------TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECSS
T ss_pred cEEEEEECCCCCCC----------------------cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECCC
Confidence 99999998654221 112345679999999995 99999999999999999999876
Q ss_pred ---CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 242 ---KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 242 ---~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
+|+|||+|.+.++|.+|+..|||..++|+.|.|.|+++...
T Consensus 223 g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 223 GQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp CCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSC
T ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCc
Confidence 78999999999999999999999999999999999987754
No 2
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=1.6e-46 Score=335.74 Aligned_cols=245 Identities=18% Similarity=0.297 Sum_probs=210.9
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
++++.++|||+|||+++++++|+++|+.||+|.+|++..+.. ++|||||+|.+.++|.+|++ +++..+.|+.|.|.++
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHHHHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 467899999999999999999999999999999999998754 57899999999999999995 8999999999999986
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCC-CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCc
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG-EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 160 (390)
. .++|||+|||+++++++|+++|+.|| .|..+.++.+.. |.++|||||+|.+.++|.+|++.|++.
T Consensus 116 ~------------~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~g~ 182 (292)
T 2ghp_A 116 T------------ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRF-NTSRRFAYIDVTSKEDARYCVEKLNGL 182 (292)
T ss_dssp C------------SCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC--------CCEEEEECSSHHHHHHHHHHHTTC
T ss_pred C------------CCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCC-CCcceEEEEEECCHHHHHHHHHHhCCC
Confidence 3 58999999999999999999999999 999999998865 679999999999999999999999999
Q ss_pred eeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCC-CcHHHHHhhhcCCCceeEEEEe
Q psy2618 161 WLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD-LNEELVSKVFSPFGTIVDIRVF 239 (390)
Q Consensus 161 ~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~ 239 (390)
.+.|+.|.|.++.+....... .......++|||+|||.. +++++|+++|+.||.|.++.++
T Consensus 183 ~~~g~~l~v~~a~~~~~~~~~------------------~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~ 244 (292)
T 2ghp_A 183 KIEGYTLVTKVSNPLEKSKRT------------------DSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIP 244 (292)
T ss_dssp EETTEECEEEECCCC---------------------------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECC
T ss_pred EeCCcEEEEEECCCCcccccc------------------cccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEE
Confidence 999999999998765332211 112335578999999999 9999999999999999999997
Q ss_pred cC-------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 240 KE-------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 240 ~~-------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
++ +|+|||+|.+.++|.+|+ .|||..++|+.|.|.|++++
T Consensus 245 ~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 245 AGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 291 (292)
T ss_dssp SCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETTEEEEEEECCCC
T ss_pred ecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECCcEEEEEEecCC
Confidence 64 579999999999999999 99999999999999999875
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2e-34 Score=235.49 Aligned_cols=163 Identities=36% Similarity=0.642 Sum_probs=152.5
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPG 85 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~ 85 (390)
|+|||+|||.++++++|+++|+.||+|.+|++..++. ++|+|||+|.+.++|.+|++.+++..+.|+.|.|.++....
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~~ 80 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQSQ 80 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCCC
Confidence 6899999999999999999999999999999987764 56899999999999999999999999999999999997654
Q ss_pred CCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCe
Q psy2618 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSR 165 (390)
Q Consensus 86 ~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 165 (390)
. ......++|+|+|||.++++++|+++|+.||.|..+.++.++.+|.++|+|||+|.+.++|.+|++.|++..++|+
T Consensus 81 ~---~~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 157 (166)
T 3md3_A 81 Q---SSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGR 157 (166)
T ss_dssp C---CCCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTE
T ss_pred C---CCCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCc
Confidence 3 3455678999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEeecC
Q psy2618 166 SIRTNWST 173 (390)
Q Consensus 166 ~i~v~~~~ 173 (390)
.|.|.|+.
T Consensus 158 ~i~v~~a~ 165 (166)
T 3md3_A 158 PLRINWAA 165 (166)
T ss_dssp ECEEEESC
T ss_pred EEEEEecC
Confidence 99999985
No 4
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=6.7e-34 Score=232.81 Aligned_cols=162 Identities=29% Similarity=0.507 Sum_probs=151.0
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
++++|||+|||+++++++|+++|+.||+|.+|++..++. ++|||||+|.+.++|.+|++.|++..+.|++|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 679999999999999999999999999999999988754 57899999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee
Q psy2618 83 SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162 (390)
Q Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 162 (390)
+.. .....++|+|+|||..+++++|+++|+.||.|..+.++++..+++++|+|||+|.+.++|.+|++.|++..+
T Consensus 82 ~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 156 (168)
T 1b7f_A 82 PGG-----ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIP 156 (168)
T ss_dssp CCS-----STTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCc-----ccCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEe
Confidence 643 344578999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred CC--eeEEEeec
Q psy2618 163 GS--RSIRTNWS 172 (390)
Q Consensus 163 ~g--~~i~v~~~ 172 (390)
.| +.|.|.|+
T Consensus 157 ~g~~~~l~V~~A 168 (168)
T 1b7f_A 157 EGGSQPLSVRLA 168 (168)
T ss_dssp TTCSSCCEEEEC
T ss_pred cCCCeEEEEEeC
Confidence 87 99999875
No 5
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=1.8e-34 Score=245.04 Aligned_cols=166 Identities=33% Similarity=0.539 Sum_probs=148.7
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.++|||+|||+++++++|+++|+.||+|.+|++++++. ++|||||+|.+.++|.+|++.+++..+.|+.|++.++
T Consensus 13 ~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~ 92 (213)
T 4f02_A 13 YPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWS 92 (213)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCcccccccc
Confidence 4678999999999999999999999999999999998754 5689999999999999999999999999999999988
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCce
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW 161 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 161 (390)
...... .....++|||+|||+++++++|+++|+.||.|..+.++++.. .++|||||+|.+.++|.+|++.|++..
T Consensus 93 ~~~~~~---~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~--~~~g~~fV~f~~~~~a~~Ai~~lng~~ 167 (213)
T 4f02_A 93 QRDPSL---RKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGML 167 (213)
T ss_dssp CCCTHH---HHHCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred cccccc---cccccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCC--CCceEEEEEeCCHHHHHHHHHHhCCCE
Confidence 653221 122356899999999999999999999999999999998853 479999999999999999999999999
Q ss_pred eCCeeEEEeecCCC
Q psy2618 162 LGSRSIRTNWSTRK 175 (390)
Q Consensus 162 ~~g~~i~v~~~~~~ 175 (390)
++|+.|.|.++.++
T Consensus 168 ~~g~~i~V~~a~~~ 181 (213)
T 4f02_A 168 LNDRKVFVGRFKSR 181 (213)
T ss_dssp ETTEECEEEECCCH
T ss_pred ECCEEEEEEEcCCC
Confidence 99999999998754
No 6
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=5.2e-34 Score=242.14 Aligned_cols=167 Identities=32% Similarity=0.539 Sum_probs=149.6
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
..+.++|||+|||+++++++|+++|++||.|.+|.+++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|++.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~ 91 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMW 91 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccc
Confidence 34568999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC----CCeEEE
Q psy2618 172 STRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFV 247 (390)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~----~g~~fv 247 (390)
+........ ...++|||+||+..+++++|+++|+.||.|++++++++ +|+|||
T Consensus 92 ~~~~~~~~~-----------------------~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV 148 (213)
T 4f02_A 92 SQRDPSLRK-----------------------SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFV 148 (213)
T ss_dssp CCCCTHHHH-----------------------HCTTEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEE
T ss_pred ccccccccc-----------------------cccccceECCcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEE
Confidence 864421110 11246999999999999999999999999999999865 689999
Q ss_pred EecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 248 KFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 248 ~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
+|.+.++|.+|++.|||..++|+.|.|.+++++.
T Consensus 149 ~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~ 182 (213)
T 4f02_A 149 HFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK 182 (213)
T ss_dssp EESSHHHHHHHHHHHTTCEETTEECEEEECCCHH
T ss_pred EeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCc
Confidence 9999999999999999999999999999997653
No 7
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=1.1e-33 Score=231.22 Aligned_cols=162 Identities=28% Similarity=0.491 Sum_probs=149.2
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
++++|||+|||+++++++|+++|+.||.|.+|++..++. ++|+|||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 1 s~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 80 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CcceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecC
Confidence 479999999999999999999999999999999998763 45899999999999999999999999999999999997
Q ss_pred CCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee
Q psy2618 83 SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162 (390)
Q Consensus 83 ~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 162 (390)
+.. .....++|+|+|||..+++++|+++|+.||.|..+.++.+..+|+++|+|||+|.+.++|.+|++.|++..+
T Consensus 81 ~~~-----~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~ 155 (167)
T 1fxl_A 81 PSS-----ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKP 155 (167)
T ss_dssp CCC-----GGGTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCc-----ccCCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCcc
Confidence 632 334568899999999999999999999999999999999988999999999999999999999999999999
Q ss_pred CCee--EEEeec
Q psy2618 163 GSRS--IRTNWS 172 (390)
Q Consensus 163 ~g~~--i~v~~~ 172 (390)
.|+. |.|.||
T Consensus 156 ~g~~~~i~v~~A 167 (167)
T 1fxl_A 156 SGATEPITVKFA 167 (167)
T ss_dssp TTCSSCCEEEEC
T ss_pred CCCccceEEEeC
Confidence 9975 777775
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=2e-33 Score=236.04 Aligned_cols=174 Identities=21% Similarity=0.388 Sum_probs=149.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||+++++++|+++|+.||.|.+|+++.++. ++|||||+|.+.++|.+|++. ++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~ 87 (196)
T 1l3k_A 9 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPK 87 (196)
T ss_dssp CCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeee
Confidence 456789999999999999999999999999999999998754 568999999999999999975 8999999999999
Q ss_pred ecCCCCCCCCC-CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc
Q psy2618 80 WASSPGNQPKQ-DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158 (390)
Q Consensus 80 ~~~~~~~~~~~-~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 158 (390)
++......... .....++|||+|||.++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++. +
T Consensus 88 ~~~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~ 166 (196)
T 1l3k_A 88 RAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-K 166 (196)
T ss_dssp ECCC-----------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-S
T ss_pred cccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-C
Confidence 99765443222 234568999999999999999999999999999999999998999999999999999999999976 7
Q ss_pred CceeCCeeEEEeecCCCCCC
Q psy2618 159 GQWLGSRSIRTNWSTRKPPA 178 (390)
Q Consensus 159 ~~~~~g~~i~v~~~~~~~~~ 178 (390)
+..++|+.|.|.++.++...
T Consensus 167 ~~~~~G~~i~v~~a~~k~~~ 186 (196)
T 1l3k_A 167 YHTVNGHNCEVRKALSKQEM 186 (196)
T ss_dssp CCEETTEECEEEECC-----
T ss_pred CcEECCEEEEEEecCChhHh
Confidence 99999999999999877543
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=7.2e-34 Score=242.51 Aligned_cols=172 Identities=26% Similarity=0.476 Sum_probs=153.6
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+.++|||+|||.++++++|+++|+.||.|.+|++..++ .++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 46899999999999999999999999999999998765 368999999999999999999999999999999999876
Q ss_pred CCCCCCC------CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHH
Q psy2618 83 SPGNQPK------QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156 (390)
Q Consensus 83 ~~~~~~~------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 156 (390)
....... ......++|||+|||.++++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|.+|++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~ 186 (216)
T 2qfj_A 107 NIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSS 186 (216)
T ss_dssp CCGGGHHHHHHHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHH
T ss_pred CccccchhhhhhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHH
Confidence 5432110 1224568999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCceeCCeeEEEeecCCCCC
Q psy2618 157 MNGQWLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 157 l~~~~~~g~~i~v~~~~~~~~ 177 (390)
|++..++|+.|.|.++.....
T Consensus 187 l~g~~~~g~~i~V~~a~~~~~ 207 (216)
T 2qfj_A 187 MNLFDLGGQYLRVGKAVTPPM 207 (216)
T ss_dssp HTTCBCSSSBCEEEECSSCSS
T ss_pred ccCCEeCCcEEEEEEecCCCC
Confidence 999999999999999987643
No 10
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=1e-33 Score=231.48 Aligned_cols=163 Identities=20% Similarity=0.416 Sum_probs=148.4
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+++++|||+|||+++++++|+++|+.||.|.+|++..++ .++|||||+|.+.++|.+|++ ++..+.|+.|.+.++
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~ 78 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRA 78 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEEC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcccccc
Confidence 468999999999999999999999999999999998774 367999999999999999998 467899999999988
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCce
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW 161 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 161 (390)
.... .....++|||+|||.++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++ +++..
T Consensus 79 ~~~~-----~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~ 152 (167)
T 2cjk_A 79 IPRD-----EQDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFID 152 (167)
T ss_dssp CCHH-----HHHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEEC
T ss_pred cchh-----hccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEE
Confidence 6522 23346799999999999999999999999999999999998899999999999999999999997 79999
Q ss_pred eCCeeEEEeecCCC
Q psy2618 162 LGSRSIRTNWSTRK 175 (390)
Q Consensus 162 ~~g~~i~v~~~~~~ 175 (390)
+.|+.|.|.++.++
T Consensus 153 ~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 153 FKDRKIEIKRAEPR 166 (167)
T ss_dssp SSSSCEEEEECCCC
T ss_pred eCCeEEEEeecCCC
Confidence 99999999999765
No 11
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=1.5e-32 Score=225.66 Aligned_cols=160 Identities=28% Similarity=0.505 Sum_probs=146.2
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhccc----C-------CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQI----G-------PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~----G-------~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
++.++|||+|||.++++++|+++|+.| | .|.++++. .++|||||+|.+.++|.+|+ .+++..+.|
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~---~~~g~afV~f~~~~~A~~A~-~~~~~~~~g 77 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN---QDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE---TTTTEEEEEESSHHHHHHHG-GGTTCEETT
T ss_pred CcccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec---CCCCEEEEEeCCHHHHHHHH-HhCCcEecC
Confidence 578999999999999999999999999 6 66666664 35789999999999999999 799999999
Q ss_pred ceeeEeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHH
Q psy2618 74 KEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENA 153 (390)
Q Consensus 74 ~~l~v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a 153 (390)
+.|.|.++.... .....++|+|+|||..+++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|.+|
T Consensus 78 ~~i~v~~~~~~~-----~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A 152 (172)
T 2g4b_A 78 QSLKIRRPHDYQ-----PLPGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQA 152 (172)
T ss_dssp EECEEECCSSCC-----CCTTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHH
T ss_pred ceeeecCCcccC-----CCCCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHH
Confidence 999999876532 234478999999999999999999999999999999999988999999999999999999999
Q ss_pred HHHhcCceeCCeeEEEeecC
Q psy2618 154 ITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 154 ~~~l~~~~~~g~~i~v~~~~ 173 (390)
++.|++..++|+.|.|.++.
T Consensus 153 ~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 153 IAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp HHHHTTCEETTEECEEEECC
T ss_pred HHHcCCCEECCeEEEEEeCC
Confidence 99999999999999999874
No 12
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.4e-32 Score=226.46 Aligned_cols=164 Identities=28% Similarity=0.464 Sum_probs=145.8
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-----CCCeEEEEEccHHHHHHHHHHhcCeeec---ccee
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-----NDPYAFLEFVHHTVAATALAAMNKRVFL---EKEM 76 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-----~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~~l 76 (390)
+++++|||+|||+++++++|+++|+.||+|.+|++.++.. ++|||||+|.+.++|.+|++.|++..+. ++.+
T Consensus 1 s~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~ 80 (175)
T 3nmr_A 1 SDAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPI 80 (175)
T ss_dssp CCCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccce
Confidence 4689999999999999999999999999999999998763 4689999999999999999999998776 5777
Q ss_pred eEeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHH
Q psy2618 77 KVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156 (390)
Q Consensus 77 ~v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~ 156 (390)
.+.++..... .....++|||+|||.++++++|+++|+.||.|..+.++++. +|+++|||||+|.+.++|.+|++.
T Consensus 81 ~~~~~~~~~~----~~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~-~g~~~g~afV~f~~~~~A~~A~~~ 155 (175)
T 3nmr_A 81 QMKPADSEKN----NAVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGP-DGLSRGCAFVTFTTRAMAQTAIKA 155 (175)
T ss_dssp EEEECGGGCC----SCGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHH
T ss_pred EEcccccccc----ccCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECC-CCCEEEEEEEEECCHHHHHHHHHH
Confidence 7777654322 34467899999999999999999999999999999999985 578999999999999999999999
Q ss_pred hcCceeC---CeeEEEeecC
Q psy2618 157 MNGQWLG---SRSIRTNWST 173 (390)
Q Consensus 157 l~~~~~~---g~~i~v~~~~ 173 (390)
|++..+. ++.|.|.|+.
T Consensus 156 l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 156 MHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp HTTSCCCTTCSSCCEEEECC
T ss_pred hcCCcccCCCCCCeEEEecC
Confidence 9998775 4999999873
No 13
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.8e-32 Score=233.79 Aligned_cols=174 Identities=25% Similarity=0.458 Sum_probs=149.4
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
..++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~ 106 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPS 106 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCS
T ss_pred cCCEEEEECCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCC
Confidence 35789999999999999999999999999999999998899999999999999999999999999999999999998876
Q ss_pred CCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEE
Q psy2618 174 RKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFV 247 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv 247 (390)
.......... .........++|||+||+..+++++|+++|+.||.|+++.++++ +|+|||
T Consensus 107 ~~~~~~~~~~--------------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV 172 (216)
T 2qfj_A 107 NIGQAQPIID--------------QLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFI 172 (216)
T ss_dssp CCGGGHHHHH--------------HHHHHHTTSCEEEEECCCTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEE
T ss_pred Cccccchhhh--------------hhhcccCCCcEEEEeCCCCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEE
Confidence 5432111000 00111234568999999999999999999999999999999976 689999
Q ss_pred EecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 248 KFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 248 ~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
+|.+.++|.+|++.||+..++|+.|+|.++....
T Consensus 173 ~F~~~~~A~~A~~~l~g~~~~g~~i~V~~a~~~~ 206 (216)
T 2qfj_A 173 EYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPP 206 (216)
T ss_dssp EESSHHHHHHHHHHHTTCBCSSSBCEEEECSSCS
T ss_pred EecCHHHHHHHHHHccCCEeCCcEEEEEEecCCC
Confidence 9999999999999999999999999999998764
No 14
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=4.2e-32 Score=227.67 Aligned_cols=164 Identities=14% Similarity=0.206 Sum_probs=141.0
Q ss_pred CCCCeEEEeCCC-hhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 5 SQPTTLYVGNLD-VSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 5 ~~~~~l~v~nLp-~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.+.++|||+||| .++++++|+++|+.||.|.+|++.++ .+|||||+|.+.++|++|++.||+..+.|+.|+|.+++.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~ 79 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQ 79 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccC
Confidence 468999999999 89999999999999999999999865 478999999999999999999999999999999999864
Q ss_pred CCCCCCC--------------------------------CCCCceEEEEcCCCcccCHHHHHHHhCCCCCe--eEEEEee
Q psy2618 84 PGNQPKQ--------------------------------DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI--SNCRIVR 129 (390)
Q Consensus 84 ~~~~~~~--------------------------------~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i--~~~~~~~ 129 (390)
....+.. ...+.++|||+|||+++++++|+++|+.||.| .+++++.
T Consensus 80 ~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~ 159 (205)
T 3tyt_A 80 PAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKVFS 159 (205)
T ss_dssp SCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEECS
T ss_pred CccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEEc
Confidence 3211100 01235689999999999999999999999998 8898887
Q ss_pred CCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCe----eEEEeec
Q psy2618 130 DPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSR----SIRTNWS 172 (390)
Q Consensus 130 ~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~----~i~v~~~ 172 (390)
+. +.++|+|||+|.+.++|.+|+..|++..+.|+ .+.|+++
T Consensus 160 ~~--~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 160 GK--SERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CC--SSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CC--CCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 74 45679999999999999999999999999876 4555543
No 15
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=8.8e-32 Score=220.17 Aligned_cols=159 Identities=25% Similarity=0.520 Sum_probs=147.0
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
++++|||+|||+++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 81 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 81 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecC
Confidence 46899999999999999999999999999999999998899999999999999999999999999999999999999987
Q ss_pred CCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEE
Q psy2618 174 RKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFV 247 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv 247 (390)
+... ....++|||+|||..+++++|+++|++||.|.++.+.++ +|+|||
T Consensus 82 ~~~~-------------------------~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV 136 (168)
T 1b7f_A 82 PGGE-------------------------SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFV 136 (168)
T ss_dssp CCSS-------------------------TTTTCEEEEESCCTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEE
T ss_pred CCcc-------------------------cCCCCCEEEeCCCCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEE
Confidence 5432 123467999999999999999999999999999999876 489999
Q ss_pred EecCHHHHHHHHHHhcCceecC--eEEEEEec
Q psy2618 248 KFTTKETATHAIESIHNTDING--HTVKCFWG 277 (390)
Q Consensus 248 ~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~ 277 (390)
+|.+.++|.+|++.||+..+.| +.|+|.||
T Consensus 137 ~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 137 RYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp EESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred EECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999987 99999886
No 16
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1e-31 Score=225.98 Aligned_cols=168 Identities=27% Similarity=0.486 Sum_probs=147.9
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhccc----C-------CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQI----G-------PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~----G-------~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
+.+++|||+|||+++++++|+++|+.| | .|.++++ ..++|||||+|.+.++|++|+ .|++..+.|
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g 77 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGIIFQG 77 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTEEETT
T ss_pred CceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCCEEcC
Confidence 468999999999999999999999999 4 5555555 345789999999999999999 799999999
Q ss_pred ceeeEeecCCCCCCC---------------CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCc
Q psy2618 74 KEMKVNWASSPGNQP---------------KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138 (390)
Q Consensus 74 ~~l~v~~~~~~~~~~---------------~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g 138 (390)
+.|.|.++....... .......++|||+|||..+++++|+++|+.||.|..+.+.+++.+|+++|
T Consensus 78 ~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g 157 (198)
T 2yh0_A 78 QSLKIRRPHDYQPLPGMSENPSVYVPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKG 157 (198)
T ss_dssp EEEEEECCCCCCCCCCSSSCSSCCCTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEE
T ss_pred ceEEEeCCCCCCCCCCCcCCCcCCCCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcce
Confidence 999999987643211 11225679999999999999999999999999999999999988999999
Q ss_pred EEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCC
Q psy2618 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176 (390)
Q Consensus 139 ~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 176 (390)
||||+|.+.++|.+|++.|++..++|+.|.|.++.++.
T Consensus 158 ~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 195 (198)
T 2yh0_A 158 YAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGA 195 (198)
T ss_dssp EEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred EEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 99999999999999999999999999999999997654
No 17
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-31 Score=218.61 Aligned_cols=160 Identities=27% Similarity=0.561 Sum_probs=145.4
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
++|||+|||.++++++|+++|+.||.|.++.+++++. ++++|||||+|.+.++|.+|++.+++..+.|+.|.|.++...
T Consensus 1 R~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~-~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKN-NKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CEEEEEEEETTCCHHHHHHHHGGGSCEEEEEEECCCC--CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CEEEECCCCCcCCHHHHHHHHHhcCCeEEEEEEECCC-CCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 5899999999999999999999999999999999864 579999999999999999999999999999999999998654
Q ss_pred CCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEe
Q psy2618 176 PPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKF 249 (390)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f 249 (390)
... .....++|||+|||..+++++|+++|+.||.|.++.+.++ +|+|||+|
T Consensus 80 ~~~-----------------------~~~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f 136 (166)
T 3md3_A 80 QQS-----------------------SSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSF 136 (166)
T ss_dssp CCC-----------------------CCTTCEEEEEESCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEE
T ss_pred CCC-----------------------CCCCCceEEECCCCCCCCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEe
Confidence 321 1224567999999999999999999999999999999865 67999999
Q ss_pred cCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 250 TTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 250 ~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
.+.++|.+|++.||+..++|+.|.|.|++.
T Consensus 137 ~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~ 166 (166)
T 3md3_A 137 TSQDDAQNAMDSMQGQDLNGRPLRINWAAK 166 (166)
T ss_dssp SCHHHHHHHHHHHTTCEETTEECEEEESCC
T ss_pred CCHHHHHHHHHHhCCCccCCcEEEEEecCC
Confidence 999999999999999999999999999863
No 18
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=5.3e-32 Score=223.02 Aligned_cols=165 Identities=22% Similarity=0.329 Sum_probs=144.4
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEE--EeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCK--VIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~--~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
.+.++.++|||+|||.++++++|+++|+.||.|..+. ......++|||||+|.+.++|.+|++ |++..+.|+.|.|.
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 86 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEEEEEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeEEEEe
Confidence 3677899999999999999999999999998766522 22334478999999999999999995 99999999999999
Q ss_pred ecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcC
Q psy2618 80 WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 159 (390)
++..... ......++|||+|||.++++++|+++|+.||.|..+ ..++.++|||||+|.+.++|.+|++.|++
T Consensus 87 ~~~~~~~---~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~A~~A~~~l~g 158 (175)
T 1fje_B 87 KPKGRDS---KKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQG 158 (175)
T ss_dssp CCCCSSC---STTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-----CSSSSCCSEEEEECSSHHHHHHHHHHHTE
T ss_pred cCCCccc---cccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-----cCCCCCceEEEEEECCHHHHHHHHHHhCC
Confidence 9976433 234567899999999999999999999999988665 46778999999999999999999999999
Q ss_pred ceeCCeeEEEeecCCC
Q psy2618 160 QWLGSRSIRTNWSTRK 175 (390)
Q Consensus 160 ~~~~g~~i~v~~~~~~ 175 (390)
..+.|+.|.|.|+.++
T Consensus 159 ~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 159 AEIDGRSVSLYYTGEK 174 (175)
T ss_dssp EEETTEEEEEEECSSC
T ss_pred CEECCeEEEEEecCCC
Confidence 9999999999999765
No 19
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=1.6e-31 Score=237.28 Aligned_cols=166 Identities=24% Similarity=0.392 Sum_probs=149.0
Q ss_pred CCCCCCeEEEeCCChhccHHHHH----HHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLC----ALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~----~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
+.+++++|||+|||.++++++|+ ++|+.||.|.+|++.++..++|||||+|.+.++|.+|++.||+..+.|+.|+|
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 84 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 84 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEE
Confidence 67889999999999999999977 89999999999999887778999999999999999999999999999999999
Q ss_pred eecCCCCCC-----------------------------------------------------------------------
Q psy2618 79 NWASSPGNQ----------------------------------------------------------------------- 87 (390)
Q Consensus 79 ~~~~~~~~~----------------------------------------------------------------------- 87 (390)
.++......
T Consensus 85 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~ 164 (282)
T 3pgw_A 85 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQPPYM 164 (282)
T ss_pred EEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCCCCC
Confidence 999764420
Q ss_pred -----------------------------------CCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCC
Q psy2618 88 -----------------------------------PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQ 132 (390)
Q Consensus 88 -----------------------------------~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~ 132 (390)
........++|||+|||.++++++|+++|+.||.|.++.++.+
T Consensus 165 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~~-- 242 (282)
T 3pgw_A 165 PPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPG-- 242 (282)
T ss_pred CCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEecC--
Confidence 0012234688999999999999999999999999999999865
Q ss_pred CCCCCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEeecC
Q psy2618 133 TLKSKGYAFVSFVKKAEAENAITAMNGQWLG-SRSIRTNWST 173 (390)
Q Consensus 133 ~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 173 (390)
.+|||||+|.+.++|.+|++.|++..+. |+.|+|.|+.
T Consensus 243 ---~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 243 ---RHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred ---CCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 2689999999999999999999999999 9999999985
No 20
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.98 E-value=1.5e-31 Score=218.61 Aligned_cols=158 Identities=25% Similarity=0.575 Sum_probs=145.0
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
+++|||+|||+++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++.+
T Consensus 2 ~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 81 (167)
T 1fxl_A 2 KTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARP 81 (167)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred cceEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCC
Confidence 58999999999999999999999999999999999988999999999999999999999999999999999999999875
Q ss_pred CCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEE
Q psy2618 175 KPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248 (390)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~ 248 (390)
.... ...++|||+|||..+++++|+++|++||.|.++.+.++ +|+|||+
T Consensus 82 ~~~~-------------------------~~~~~l~v~nl~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~ 136 (167)
T 1fxl_A 82 SSAS-------------------------IRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIR 136 (167)
T ss_dssp CCGG-------------------------GTTCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEE
T ss_pred Cccc-------------------------CCCCcEEECCCCCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEE
Confidence 4211 12356999999999999999999999999999999865 5899999
Q ss_pred ecCHHHHHHHHHHhcCceecCeE--EEEEec
Q psy2618 249 FTTKETATHAIESIHNTDINGHT--VKCFWG 277 (390)
Q Consensus 249 f~~~~~a~~a~~~l~~~~~~g~~--i~v~~~ 277 (390)
|.+.++|.+|++.|||..+.|+. |+|.||
T Consensus 137 f~~~~~A~~A~~~l~g~~~~g~~~~i~v~~A 167 (167)
T 1fxl_A 137 FDKRIEAEEAIKGLNGQKPSGATEPITVKFA 167 (167)
T ss_dssp ESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred eCCHHHHHHHHHHhcCCccCCCccceEEEeC
Confidence 99999999999999999999965 888875
No 21
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.98 E-value=1.4e-31 Score=224.74 Aligned_cols=174 Identities=22% Similarity=0.491 Sum_probs=147.1
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.+....++|||+|||+++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v 86 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEP 86 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeee
Confidence 3456789999999999999999999999999999999999999999999999999999999999976 889999999999
Q ss_pred eecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CC
Q psy2618 170 NWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KG 243 (390)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g 243 (390)
.++........ .......++|||+|||..+++++|+++|+.||.|.++.++++ +|
T Consensus 87 ~~~~~~~~~~~-------------------~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g 147 (196)
T 1l3k_A 87 KRAVSREDSQR-------------------PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRG 147 (196)
T ss_dssp EECCC------------------------------CCSEEEEECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEE
T ss_pred ecccCcccccc-------------------cccCCCcceEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccc
Confidence 99875432211 011234468999999999999999999999999999999865 68
Q ss_pred eEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCCC
Q psy2618 244 YAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNS 284 (390)
Q Consensus 244 ~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~ 284 (390)
+|||+|.+.++|.+|+.. ++..++|+.|.|.++.++....
T Consensus 148 ~afV~F~~~~~A~~A~~~-~~~~~~G~~i~v~~a~~k~~~~ 187 (196)
T 1l3k_A 148 FAFVTFDDHDSVDKIVIQ-KYHTVNGHNCEVRKALSKQEMA 187 (196)
T ss_dssp EEEEEESSHHHHHHHHHC-SCCEETTEECEEEECC------
T ss_pred eEEEEECCHHHHHHHHHh-CCcEECCEEEEEEecCChhHhc
Confidence 999999999999999986 7999999999999998876543
No 22
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.98 E-value=4e-31 Score=226.92 Aligned_cols=165 Identities=19% Similarity=0.311 Sum_probs=146.7
Q ss_pred CCCCCeEEEeCCCh-hccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 4 ESQPTTLYVGNLDV-SVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 4 ~~~~~~l~v~nLp~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
..++++|||+|||+ ++++++|+++|+.||.|.+|++..++ +|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~ 108 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 108 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCS
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEec
Confidence 45789999999999 99999999999999999999998875 7899999999999999999999999999999999997
Q ss_pred CCCCCCC------------------------------CCCCCceEEEEcCCCcccCHHHHHHHhCCCC-CeeEEEEeeCC
Q psy2618 83 SPGNQPK------------------------------QDTSNHYHIFVGDLSPEIETQTLKEAFAPFG-EISNCRIVRDP 131 (390)
Q Consensus 83 ~~~~~~~------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~ 131 (390)
....... ....+.++|||+|||..+++++|+++|+.|| .|..+.++.+
T Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~- 187 (229)
T 2adc_A 109 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK- 187 (229)
T ss_dssp CCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEECSS-
T ss_pred CccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEEEEC-
Confidence 5421110 0123368999999999999999999999999 9999998763
Q ss_pred CCCCCCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEeecCCC
Q psy2618 132 QTLKSKGYAFVSFVKKAEAENAITAMNGQWLG-SRSIRTNWSTRK 175 (390)
Q Consensus 132 ~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 175 (390)
.+|+|||+|.+.++|.+|++.|++..+. |+.|+|.|+.+.
T Consensus 188 ----~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 188 ----DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp ----STTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred ----CCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 4789999999999999999999999999 999999998753
No 23
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.97 E-value=2.8e-30 Score=229.35 Aligned_cols=185 Identities=22% Similarity=0.382 Sum_probs=149.9
Q ss_pred CCCCceEEEEcCCCcccCHHHHH----HHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCee
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLK----EAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS 166 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 166 (390)
+...+++|||+|||+++++++|+ ++|+.||.|.+|.+++ +++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~---~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 81 (282)
T 3pgw_A 5 ETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSR---SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKP 81 (282)
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcC---CCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcE
Confidence 45668999999999999999976 8999999999998876 6778999999999999999999999999999999
Q ss_pred EEEeecCCCCCCCcccccccCCCC--------------------------------c-----------------------
Q psy2618 167 IRTNWSTRKPPAMTNERKRQNSHT--------------------------------K----------------------- 191 (390)
Q Consensus 167 i~v~~~~~~~~~~~~~~~~~~~~~--------------------------------~----------------------- 191 (390)
|+|.++.................. .
T Consensus 82 l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 161 (282)
T 3pgw_A 82 MRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQP 161 (282)
T ss_pred EEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCCC
Confidence 999998665421100000000000 0
Q ss_pred ----------cc---------------------cccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEec
Q psy2618 192 ----------TI---------------------TFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK 240 (390)
Q Consensus 192 ----------~~---------------------~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~ 240 (390)
.. ............+++|||+||+..+++++|+++|+.||.|+++++++
T Consensus 162 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~~ 241 (282)
T 3pgw_A 162 PYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVP 241 (282)
T ss_pred CCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEec
Confidence 00 00000112334578899999999999999999999999999999998
Q ss_pred CC-CeEEEEecCHHHHHHHHHHhcCceec-CeEEEEEecc
Q psy2618 241 EK-GYAFVKFTTKETATHAIESIHNTDIN-GHTVKCFWGK 278 (390)
Q Consensus 241 ~~-g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~ 278 (390)
++ |+|||+|.+.++|.+|++.|||..++ |+.|+|.|++
T Consensus 242 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ak 281 (282)
T 3pgw_A 242 GRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAK 281 (282)
T ss_pred CCCcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEEEEEec
Confidence 86 99999999999999999999999999 9999999986
No 24
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.97 E-value=7.6e-31 Score=216.10 Aligned_cols=161 Identities=24% Similarity=0.434 Sum_probs=142.0
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCC--CCCcEEEEEecCHHHHHHHHHHhcCceeC---CeeEE
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL--KSKGYAFVSFVKKAEAENAITAMNGQWLG---SRSIR 168 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g--~~~g~afv~f~~~~~a~~a~~~l~~~~~~---g~~i~ 168 (390)
+.++|||+|||+++++++|+++|+.||.|.++.+++++.++ +++|||||+|.+.++|.+|++.+++..+. ++.+.
T Consensus 2 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~ 81 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQ 81 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceE
Confidence 56899999999999999999999999999999999998887 89999999999999999999999998765 56777
Q ss_pred EeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-----CC
Q psy2618 169 TNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KG 243 (390)
Q Consensus 169 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g 243 (390)
+.++...... ....++|||+|||..+++++|+++|++||.|.++.+.++ +|
T Consensus 82 ~~~~~~~~~~------------------------~~~~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g 137 (175)
T 3nmr_A 82 MKPADSEKNN------------------------AVEDRKLFIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRG 137 (175)
T ss_dssp EEECGGGCCS------------------------CGGGSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEE
T ss_pred Eccccccccc------------------------cCCCCeEEEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEE
Confidence 7766433211 123457999999999999999999999999999999976 78
Q ss_pred eEEEEecCHHHHHHHHHHhcCceec---CeEEEEEecc
Q psy2618 244 YAFVKFTTKETATHAIESIHNTDIN---GHTVKCFWGK 278 (390)
Q Consensus 244 ~~fv~f~~~~~a~~a~~~l~~~~~~---g~~i~v~~~~ 278 (390)
+|||+|.+.++|.+|++.|||..+. ++.|.|.|+.
T Consensus 138 ~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 138 CAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 9999999999999999999998775 4999999974
No 25
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=4.9e-31 Score=221.66 Aligned_cols=163 Identities=19% Similarity=0.315 Sum_probs=145.1
Q ss_pred CCCeEEEeCCCh-hccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 6 QPTTLYVGNLDV-SVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 6 ~~~~l~v~nLp~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
++++|||+|||+ ++++++|+++|+.||.|.+|++..++ +|||||+|.+.++|.+|++.|++..+.|+.|.|.++...
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 468999999999 99999999999999999999998765 789999999999999999999999999999999999754
Q ss_pred CCCCC------------------------------CCCCCceEEEEcCCCcccCHHHHHHHhCCCC-CeeEEEEeeCCCC
Q psy2618 85 GNQPK------------------------------QDTSNHYHIFVGDLSPEIETQTLKEAFAPFG-EISNCRIVRDPQT 133 (390)
Q Consensus 85 ~~~~~------------------------------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~ 133 (390)
..... ....+.++|+|+|||..+++++|+++|+.|| .|..+.++.+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~--- 156 (198)
T 1qm9_A 80 NVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK--- 156 (198)
T ss_dssp SCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESST---
T ss_pred CcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeC---
Confidence 21110 1123478999999999999999999999999 9999999764
Q ss_pred CCCCcEEEEEecCHHHHHHHHHHhcCceeC-CeeEEEeecCCC
Q psy2618 134 LKSKGYAFVSFVKKAEAENAITAMNGQWLG-SRSIRTNWSTRK 175 (390)
Q Consensus 134 g~~~g~afv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 175 (390)
.+|+|||+|.+.++|.+|++.|++..+. |+.|.|.|+.+.
T Consensus 157 --~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 157 --DRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp --TSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred --CCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 4789999999999999999999999999 999999998753
No 26
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.97 E-value=8.2e-31 Score=233.95 Aligned_cols=170 Identities=21% Similarity=0.300 Sum_probs=148.3
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccC-CceEEEEeecC--CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIG-PVKGCKVIREP--GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G-~v~~v~~~~~~--~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.++|||+|||.++++++|+++|+.|| .|.+|++..+. .++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 194 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVS 194 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999 99999998765 36899999999999999999999999999999999999
Q ss_pred CCCCCCCCC--CCCCceEEEEcCCCcc-cCHHHHHHHhCCCCCeeEEEEeeCCC-CCCCCcEEEEEecCHHHHHHHHHHh
Q psy2618 82 SSPGNQPKQ--DTSNHYHIFVGDLSPE-IETQTLKEAFAPFGEISNCRIVRDPQ-TLKSKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 82 ~~~~~~~~~--~~~~~~~l~v~nl~~~-~~~~~l~~~f~~~G~i~~~~~~~~~~-~g~~~g~afv~f~~~~~a~~a~~~l 157 (390)
.+....... .....++|||+|||.+ +++++|+++|+.||.|..+.++++.. ||.++|||||+|.+.++|.+|+ .|
T Consensus 195 ~~~~~~~~~~~~~~~~~~l~v~nlp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l 273 (292)
T 2ghp_A 195 NPLEKSKRTDSATLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QM 273 (292)
T ss_dssp CCC---------CCTTTEEEEEEECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GG
T ss_pred CCCcccccccccCCCCceEEEECCCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-Hh
Confidence 876544332 4556789999999999 99999999999999999999999876 5899999999999999999999 99
Q ss_pred cCceeCCeeEEEeecCCC
Q psy2618 158 NGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 158 ~~~~~~g~~i~v~~~~~~ 175 (390)
++..+.|+.|.|.|+.++
T Consensus 274 ~g~~~~g~~i~V~~a~~k 291 (292)
T 2ghp_A 274 NRSLLGNREISVSLADKK 291 (292)
T ss_dssp TTEEETTEEEEEEECCCC
T ss_pred cCCEECCcEEEEEEecCC
Confidence 999999999999999865
No 27
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.97 E-value=1.9e-31 Score=217.93 Aligned_cols=159 Identities=21% Similarity=0.505 Sum_probs=143.7
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
++++|||+|||+++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++ ++..+.|+.|.+.++.
T Consensus 2 ~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~v~~~~ 79 (167)
T 2cjk_A 2 ESCKMFIGGLNWDTTEDNLREYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVIDPKRAI 79 (167)
T ss_dssp GGGEEEECSCCTTCCHHHHHHHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECCCEECC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEccccccc
Confidence 46899999999999999999999999999999999999999999999999999999999998 4678999999998875
Q ss_pred CCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEE
Q psy2618 174 RKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFV 247 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv 247 (390)
.... ....++|||+|||..+++++|+++|+.||.|.++.+.++ +|+|||
T Consensus 80 ~~~~-------------------------~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV 134 (167)
T 2cjk_A 80 PRDE-------------------------QDKTGKIFVGGIGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFV 134 (167)
T ss_dssp CHHH-------------------------HHHCEEEEEEEECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEE
T ss_pred chhh-------------------------ccCCCeEEECCCCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEE
Confidence 4311 012346999999999999999999999999999999866 579999
Q ss_pred EecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 248 KFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 248 ~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
+|.+.++|.+|++ +++..++|+.|.|.++.++
T Consensus 135 ~f~~~~~a~~A~~-~~~~~~~g~~i~V~~a~pk 166 (167)
T 2cjk_A 135 TYDSADAVDRVCQ-NKFIDFKDRKIEIKRAEPR 166 (167)
T ss_dssp EESSHHHHHHHHH-CSEECSSSSCEEEEECCCC
T ss_pred EECCHHHHHHHHh-CCCEEeCCeEEEEeecCCC
Confidence 9999999999998 8999999999999999875
No 28
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=99.97 E-value=3.4e-30 Score=229.02 Aligned_cols=170 Identities=21% Similarity=0.358 Sum_probs=154.8
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.++|||+|||.++++++|+++|+.||.|.++++..+.. ++|+|||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a 172 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWT 172 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCEEEEcCCCCcCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 4678999999999999999999999999999999987753 5689999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCccc-CHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCc
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEI-ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~-~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~ 160 (390)
...... ......++|||+|||.++ ++++|+++|+.||.|..+.++++. +|+++|+|||+|.+.++|.+|++.|++.
T Consensus 173 ~~~~~~--~~~~~~~~l~v~nlp~~~~~~~~l~~~f~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~A~~~l~g~ 249 (284)
T 3smz_A 173 DAGQLT--PALLHSRCLCVDRLPPGFNDVDALCRALSAVHSPTFCQLACGQ-DGQLKGFAVLEYETAEMAEEAQQQADGL 249 (284)
T ss_dssp CGGGCC--TTTTSCSEEEEECCCTTCCCHHHHHHHTCSSSCCSEEEEEECS-SCCEEEEEEEECSSHHHHHHHHHHHTTC
T ss_pred CCCCCC--cccCCccEEEEecCCcccCCHHHHHHHhhCCCCeEEEEEEECC-CCCcccEEEEEeCCHHHHHHHHHHhCCC
Confidence 765432 334567899999999995 999999999999999999999986 6889999999999999999999999999
Q ss_pred eeCCeeEEEeecCCCCC
Q psy2618 161 WLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 161 ~~~g~~i~v~~~~~~~~ 177 (390)
.+.|+.|.|.|+.++..
T Consensus 250 ~~~g~~l~v~~a~~~~~ 266 (284)
T 3smz_A 250 SLGGSHLRVSFCAPGPP 266 (284)
T ss_dssp EETTEECEEEECCSSSC
T ss_pred ccCCeEEEEEEecCCCc
Confidence 99999999999987654
No 29
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.97 E-value=4.5e-30 Score=220.39 Aligned_cols=185 Identities=20% Similarity=0.374 Sum_probs=150.8
Q ss_pred CCCCceEEEEcCCCc-ccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 91 DTSNHYHIFVGDLSP-EIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
...+.++|||+|||+ ++++++|+++|+.||.|.++.+++++ +|||||+|.+.++|.+|++.+++..+.|+.|.|
T Consensus 30 ~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~-----~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 30 AGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp GCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTT-----SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECC-----CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 345678999999999 99999999999999999999998873 789999999999999999999999999999999
Q ss_pred eecCCCCCCCcccccccC------CC----CccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCC-ceeEEEE
Q psy2618 170 NWSTRKPPAMTNERKRQN------SH----TKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIRV 238 (390)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~ 238 (390)
.++............... .. ..............+++++|||+||+..+++++|+++|+.|| .|.++.+
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~~i~~v~i 184 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKF 184 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEEECTTCSSCCCCSTTSGGGTTCCCSCSEEEEECCCTTCCHHHHHHHHHTTSCCEEEEEE
T ss_pred EEecCccccCccccccccccccccccCcccccCCccccccccCCCCCCEEEEeCCCccCCHHHHHHHHHHcCCCeeEEEE
Confidence 998765322111100000 00 000000011122345678999999999999999999999999 9999999
Q ss_pred ec-CCCeEEEEecCHHHHHHHHHHhcCceec-CeEEEEEecccC
Q psy2618 239 FK-EKGYAFVKFTTKETATHAIESIHNTDIN-GHTVKCFWGKES 280 (390)
Q Consensus 239 ~~-~~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 280 (390)
++ ++|+|||+|.+.++|.+|++.|++..++ |+.|+|.|++++
T Consensus 185 ~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g~~l~v~~a~~~ 228 (229)
T 2adc_A 185 FQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 228 (229)
T ss_dssp CSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEECSSC
T ss_pred EECCCcEEEEEECCHHHHHHHHHHHCCCccCCCCeEEEEEecCC
Confidence 55 7999999999999999999999999999 999999998864
No 30
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.97 E-value=2.7e-30 Score=216.69 Aligned_cols=179 Identities=12% Similarity=0.208 Sum_probs=141.7
Q ss_pred CceEEEEcCCC-cccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 94 NHYHIFVGDLS-PEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 94 ~~~~l~v~nl~-~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
+.++|||+||+ +.+++++|+++|+.||.|.+++++++ ++|||||+|.+.++|..|++.|++..+.|+.|.|.++
T Consensus 3 ~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~-----~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s 77 (205)
T 3tyt_A 3 DSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKS-----KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVS 77 (205)
T ss_dssp CCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTT-----STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecC-----CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEc
Confidence 46799999999 89999999999999999999999875 4899999999999999999999999999999999998
Q ss_pred CCCCCCCccccc--------ccCCCCcccccc----ccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCce--eEEEE
Q psy2618 173 TRKPPAMTNERK--------RQNSHTKTITFD----EVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTI--VDIRV 238 (390)
Q Consensus 173 ~~~~~~~~~~~~--------~~~~~~~~~~~~----~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v--~~~~~ 238 (390)
............ ............ .......+++++|||+|||.++++++|+++|++||.| +++++
T Consensus 78 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~p~~~l~v~NLp~~~t~~~L~~~F~~~G~v~~~~v~~ 157 (205)
T 3tyt_A 78 KQPAIMPGQSYGLEDGSCSYKDFSESRNNRFSTPEQAAKNRIQHPSNVLHFFNAPLEVTEENFFEICDELGVKRPTSVKV 157 (205)
T ss_dssp SCSCCCCCSCCBCTTSCBSEEECTTCTTCSCSSHHHHTTSCCCCCCSEEEEEEECTTCCHHHHHHHHHHHTCCCCSEEEE
T ss_pred cCCccCCCcccccccCCccccccCCCccccccCcccccccccCCCcceEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEE
Confidence 754321110000 000000000000 0111223567889999999999999999999999999 89998
Q ss_pred ecC----CCeEEEEecCHHHHHHHHHHhcCceecCe----EEEEEec
Q psy2618 239 FKE----KGYAFVKFTTKETATHAIESIHNTDINGH----TVKCFWG 277 (390)
Q Consensus 239 ~~~----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~----~i~v~~~ 277 (390)
.++ +|+|||+|.+.++|.+|+..||+..+.|+ .+.|+++
T Consensus 158 ~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 158 FSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp CSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred EcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 876 48999999999999999999999999876 4666654
No 31
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.97 E-value=6.2e-30 Score=223.89 Aligned_cols=157 Identities=25% Similarity=0.435 Sum_probs=144.3
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
.+.++|||+|||+++++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~---~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~~- 95 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR---DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFATH- 95 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCC-
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeeccc-
Confidence 4668999999999999999999999999999999864 467999999999999999999999999999999999864
Q ss_pred CCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc-CceeC
Q psy2618 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN-GQWLG 163 (390)
Q Consensus 85 ~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~-~~~~~ 163 (390)
.++|||+|||..+++++|+++|+.||.|..+.++.+ .+|+++|||||+|.+.++|.+|++.++ +..+.
T Consensus 96 ----------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~ 164 (261)
T 3sde_A 96 ----------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVD-DRGRATGKGFVEFAAKPPARKALERCGDGAFLL 164 (261)
T ss_dssp ----------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEE-TTSCEEEEEEEEESSHHHHHHHHHHHHHSCEES
T ss_pred ----------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeC-CCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEe
Confidence 578999999999999999999999999999999999 688999999999999999999999994 55554
Q ss_pred ---CeeEEEeecCCCC
Q psy2618 164 ---SRSIRTNWSTRKP 176 (390)
Q Consensus 164 ---g~~i~v~~~~~~~ 176 (390)
++.|.|.++....
T Consensus 165 ~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 165 TTTPRPVIVEPMEQFD 180 (261)
T ss_dssp SSSCCBCEEEECCCEE
T ss_pred cCCCceEEEeeccccC
Confidence 9999999987653
No 32
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.97 E-value=6.1e-30 Score=214.96 Aligned_cols=181 Identities=20% Similarity=0.391 Sum_probs=148.1
Q ss_pred ceEEEEcCCCc-ccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 95 HYHIFVGDLSP-EIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 95 ~~~l~v~nl~~-~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
+++|||+|||+ ++++++|+++|+.||.|.++.+++++ +|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 3 ~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~-----~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~ 77 (198)
T 1qm9_A 3 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNK-----KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSK 77 (198)
T ss_dssp CCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTC-----SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECC
T ss_pred CcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCC-----CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEec
Confidence 58999999999 99999999999999999999998863 7899999999999999999999999999999999987
Q ss_pred CCCCCCcccccccCC------CCc----cccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCC-ceeEEEEec-C
Q psy2618 174 RKPPAMTNERKRQNS------HTK----TITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIRVFK-E 241 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g-~v~~~~~~~-~ 241 (390)
............... ... ............+++++|||+||+..+++++|+++|+.|| .|.++.+.+ +
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~~v~~v~i~~~~ 157 (198)
T 1qm9_A 78 HQNVQLPREGQEDQGLTKDYGNSPLHRFKKPGSKNFQNIFPPSATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQKD 157 (198)
T ss_dssp CCSCCCSSSSSSSSSCEEESSCCCTTSSSSCCCCCCSCCCCCCCEEEECCCCTTCCHHHHHHHHHHTTSCCCEEEESSTT
T ss_pred CCCcCCCCcCCccccccccccCCchhhccCccccccccCCCCccEEEEeCCCCCCCHHHHHHHHHHcCCCceEEEEEeCC
Confidence 653222111100000 000 0000011112345678999999999999999999999999 999999965 6
Q ss_pred CCeEEEEecCHHHHHHHHHHhcCceec-CeEEEEEecccC
Q psy2618 242 KGYAFVKFTTKETATHAIESIHNTDIN-GHTVKCFWGKES 280 (390)
Q Consensus 242 ~g~~fv~f~~~~~a~~a~~~l~~~~~~-g~~i~v~~~~~~ 280 (390)
+|+|||+|.+.++|.+|++.||+..++ |+.|+|.|++++
T Consensus 158 ~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~ 197 (198)
T 1qm9_A 158 RKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKST 197 (198)
T ss_dssp SSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECCC
T ss_pred CcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeeccc
Confidence 999999999999999999999999999 999999998764
No 33
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.97 E-value=2.4e-30 Score=213.06 Aligned_cols=164 Identities=20% Similarity=0.363 Sum_probs=143.0
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
+....++|||+|||+++++++|+++|..||.+.. .++.+..+++++|||||+|.+.++|.+|+ .+++..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~g~~~~-~~~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~ 86 (175)
T 1fje_B 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLE 86 (175)
T ss_dssp SCSSSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEEECCCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEe
Confidence 5567899999999999999999999999998766 34555567889999999999999999999 599999999999999
Q ss_pred ecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEe--cCCCeEEEE
Q psy2618 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF--KEKGYAFVK 248 (390)
Q Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~--~~~g~~fv~ 248 (390)
++...... .....++|||+|||..+++++|+++|++||.|..+ .. +.+|+|||+
T Consensus 87 ~~~~~~~~-----------------------~~~~~~~l~v~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~ 142 (175)
T 1fje_B 87 KPKGRDSK-----------------------KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIE 142 (175)
T ss_dssp CCCCSSCS-----------------------TTGGGGEEEEESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEE
T ss_pred cCCCcccc-----------------------ccccCCEEEEeCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEE
Confidence 98765321 11234679999999999999999999999999877 22 237999999
Q ss_pred ecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 249 FTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 249 f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
|.+.++|.+|++.|+|..++|+.|.|.|++++
T Consensus 143 f~~~~~A~~A~~~l~g~~~~g~~i~v~~a~~k 174 (175)
T 1fje_B 143 FKSEADAEKNLEEKQGAEIDGRSVSLYYTGEK 174 (175)
T ss_dssp CSSHHHHHHHHHHHTEEEETTEEEEEEECSSC
T ss_pred ECCHHHHHHHHHHhCCCEECCeEEEEEecCCC
Confidence 99999999999999999999999999999765
No 34
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.96 E-value=5.1e-29 Score=209.39 Aligned_cols=177 Identities=18% Similarity=0.331 Sum_probs=144.1
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCC-----------CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFG-----------EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G-----------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 162 (390)
..++|||+|||+++++++|+++|+.|| .|.++.+ ++++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~te~~l~~~F~~~g~i~g~~~~~~~~v~~~~~------~~~~g~afV~F~~~~~A~~Al-~l~g~~~ 75 (198)
T 2yh0_A 3 MARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQI------NQDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (198)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHHHHHHHHTCCSSSSCSEEEEEE------ETTTTEEEEEESCSHHHHHHG-GGTTEEE
T ss_pred ceeEEEEcCCCCCCCHHHHHHHHHHHHhhcccccCCCCceEEeEe------cCCCCEEEEEeCCHHHHHHHH-HhcCCEE
Confidence 468999999999999999999999994 4555544 356899999999999999999 8999999
Q ss_pred CCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-
Q psy2618 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE- 241 (390)
Q Consensus 163 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~- 241 (390)
.|+.|.|.++................ .............++|||+|||..+++++|+++|++||.|.++.+.++
T Consensus 76 ~g~~i~v~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~ 150 (198)
T 2yh0_A 76 QGQSLKIRRPHDYQPLPGMSENPSVY-----VPGVVSTVVPDSAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 150 (198)
T ss_dssp TTEEEEEECCCCCCCCCCSSSCSSCC-----CTTSSCCCSSCCCCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECT
T ss_pred cCceEEEeCCCCCCCCCCCcCCCcCC-----CCCCccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecC
Confidence 99999999987654332211111000 000111222356689999999999999999999999999999999976
Q ss_pred -----CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 242 -----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 242 -----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
+|+|||+|.+.++|.+|++.|++..++|+.|.|.++++...
T Consensus 151 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 196 (198)
T 2yh0_A 151 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVGAK 196 (198)
T ss_dssp TTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 68999999999999999999999999999999999987653
No 35
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.96 E-value=3.3e-29 Score=205.69 Aligned_cols=153 Identities=21% Similarity=0.459 Sum_probs=136.6
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCC----C-------CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPF----G-------EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~----G-------~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~ 162 (390)
+.++|||+|||+++++++|+++|+.| | .|.++.+. +++|||||+|.+.++|.+|+ .+++..+
T Consensus 3 ~~~~l~V~nLp~~~t~~~l~~~F~~~g~~~g~~~~~~~~v~~~~~~------~~~g~afV~f~~~~~A~~A~-~~~~~~~ 75 (172)
T 2g4b_A 3 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQIN------QDKNFAFLEFRSVDETTQAM-AFDGIIF 75 (172)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEEE------TTTTEEEEEESSHHHHHHHG-GGTTCEE
T ss_pred cccEEEEcCCCcccCHHHHHHHHHHHhhhcccccCCCCceeeeEec------CCCCEEEEEeCCHHHHHHHH-HhCCcEe
Confidence 46899999999999999999999999 6 66666654 45899999999999999999 8999999
Q ss_pred CCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-
Q psy2618 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE- 241 (390)
Q Consensus 163 ~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~- 241 (390)
.|+.|.|.++...... ...++|||+|||..+++++|+++|++||.|.++.+.++
T Consensus 76 ~g~~i~v~~~~~~~~~-------------------------~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~ 130 (172)
T 2g4b_A 76 QGQSLKIRRPHDYQPL-------------------------PGAHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDS 130 (172)
T ss_dssp TTEECEEECCSSCCCC-------------------------TTTTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECT
T ss_pred cCceeeecCCcccCCC-------------------------CCCCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecC
Confidence 9999999987544221 12457999999999999999999999999999999877
Q ss_pred -----CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecc
Q psy2618 242 -----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278 (390)
Q Consensus 242 -----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 278 (390)
+|+|||+|.+.++|.+|++.||+..++|+.|.|.+|.
T Consensus 131 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~As 172 (172)
T 2g4b_A 131 ATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRAS 172 (172)
T ss_dssp TTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEEEEeCC
Confidence 5899999999999999999999999999999999873
No 36
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.96 E-value=1.2e-27 Score=209.35 Aligned_cols=155 Identities=25% Similarity=0.427 Sum_probs=140.0
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||+++|+++|+++|+.||.|.++.+.+ ++|||||+|.+.++|.+|+..+++..+.|+.|.|
T Consensus 17 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~------~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v 90 (261)
T 3sde_A 17 KTYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINR------DRGFGFIRLESRTLAEIAKAELDGTILKSRPLRI 90 (261)
T ss_dssp CSSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEET------TTTEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeC------CCcEEEEEECCHHHHHHHHHHcCCcEECCceeEe
Confidence 3456678999999999999999999999999999999864 4899999999999999999999999999999999
Q ss_pred eecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-----CCe
Q psy2618 170 NWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGY 244 (390)
Q Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~ 244 (390)
.++.. .++|||+||+..+++++|+++|+.||.|.++.++++ +|+
T Consensus 91 ~~a~~-------------------------------~~~l~v~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~ 139 (261)
T 3sde_A 91 RFATH-------------------------------GAALTVKNLSPVVSNELLEQAFSQFGPVEKAVVVVDDRGRATGK 139 (261)
T ss_dssp EECCC-------------------------------SSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEE
T ss_pred eeccc-------------------------------CCcccccCCCCCCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcE
Confidence 99863 246999999999999999999999999999999876 789
Q ss_pred EEEEecCHHHHHHHHHHhcC-ceec---CeEEEEEecccCC
Q psy2618 245 AFVKFTTKETATHAIESIHN-TDIN---GHTVKCFWGKESE 281 (390)
Q Consensus 245 ~fv~f~~~~~a~~a~~~l~~-~~~~---g~~i~v~~~~~~~ 281 (390)
|||+|.+.++|.+|+..|++ ..+. ++.|.|.++....
T Consensus 140 afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 140 GFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp EEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred EEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 99999999999999999954 4444 8999999987654
No 37
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.90 E-value=3.6e-23 Score=166.79 Aligned_cols=142 Identities=23% Similarity=0.334 Sum_probs=114.8
Q ss_pred EEEEeecC-CCCCeEEEEEccHHHHHHHHHHhcCee-------eccceeeEeecCCC-CCCCCCCCCCceEEEEcCCCcc
Q psy2618 36 GCKVIREP-GNDPYAFLEFVHHTVAATALAAMNKRV-------FLEKEMKVNWASSP-GNQPKQDTSNHYHIFVGDLSPE 106 (390)
Q Consensus 36 ~v~~~~~~-~~~g~afV~F~~~~~A~~a~~~l~~~~-------~~g~~l~v~~~~~~-~~~~~~~~~~~~~l~v~nl~~~ 106 (390)
+++++.++ .++|||||+|.+.++|++|++.+++.. +.+........... ...........++|||+|||++
T Consensus 2 ~~kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~ 81 (158)
T 2kn4_A 2 QYKLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGSHHHHHHMDVEGMTSLKVDNLTYR 81 (158)
T ss_dssp EEEEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCCCCSSCCCCCCBCCEEEEESCCTT
T ss_pred cEEEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccccccccccCCCCCCEEEEeCCCCC
Confidence 45665554 478999999999999999999877532 22222332322222 1222334456789999999999
Q ss_pred cCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCC
Q psy2618 107 IETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 107 ~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 177 (390)
+++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.....
T Consensus 82 ~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 152 (158)
T 2kn4_A 82 TSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 152 (158)
T ss_dssp CCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSSC
T ss_pred CCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999986543
No 38
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.89 E-value=3.2e-23 Score=157.15 Aligned_cols=106 Identities=20% Similarity=0.414 Sum_probs=74.8
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
.+++|||+|||+++++++|+++|+.||.|.+|++..+.. ++|||||+|.+.++|++|++.|++..+.|+.|.|.++...
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~ 83 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSR 83 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCC
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCc
Confidence 467899999999999999999999999999999998764 5789999999999999999999999999999999999876
Q ss_pred CCCCCC---CCCCceEEEEcCCCcccCHHH
Q psy2618 85 GNQPKQ---DTSNHYHIFVGDLSPEIETQT 111 (390)
Q Consensus 85 ~~~~~~---~~~~~~~l~v~nl~~~~~~~~ 111 (390)
..+... .....++|||+|||+++|++.
T Consensus 84 ~~~~~~~~~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 84 KEREAELGARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CC----------------------------
T ss_pred cccccccccccCCCCceEeCCCCCCccccc
Confidence 543322 233456799999999998864
No 39
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.86 E-value=1.2e-21 Score=156.16 Aligned_cols=126 Identities=20% Similarity=0.296 Sum_probs=112.2
Q ss_pred CCCCeEEEEEccHHHHHHHHHHh-cCeeeccceeeEeecCCCC-----------CCCCCCCCCceEEEEcCCCcccCHHH
Q psy2618 44 GNDPYAFLEFVHHTVAATALAAM-NKRVFLEKEMKVNWASSPG-----------NQPKQDTSNHYHIFVGDLSPEIETQT 111 (390)
Q Consensus 44 ~~~g~afV~F~~~~~A~~a~~~l-~~~~~~g~~l~v~~~~~~~-----------~~~~~~~~~~~~l~v~nl~~~~~~~~ 111 (390)
.-+|+++|+|.+.++|++|++.+ |+..+.| .+.+.++.... ..........++|||+|||+++++++
T Consensus 11 ~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~nl~~~~t~~~ 89 (150)
T 2i2y_A 11 TLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHHHHHMHRDSCPLDCKVYVGNLGNNGNKTE 89 (150)
T ss_dssp SSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSCCCCSCSSSSTTSCEEEEESCCSCCSCHH
T ss_pred cccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccccccccccCCCCCCEEEEeCCCCCCCHHH
Confidence 46789999999999999999999 9999999 99999886521 12233455679999999999999999
Q ss_pred HHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 112 l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
|+++|+.||.|.++.++++ ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.++
T Consensus 90 l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 148 (150)
T 2i2y_A 90 LERAFGYYGPLRSVWVARN-----PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGE 148 (150)
T ss_dssp HHHHHHHHSCEEEEEECSS-----SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCC
T ss_pred HHHHHHhhCCEEEEEEeeC-----CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCC
Confidence 9999999999999999876 6899999999999999999999999999999999998765
No 40
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.86 E-value=5.3e-21 Score=154.03 Aligned_cols=146 Identities=14% Similarity=0.241 Sum_probs=108.2
Q ss_pred EEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCC
Q psy2618 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSS 203 (390)
Q Consensus 124 ~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (390)
.+.++.+.. +++||+||+|.+.++|++|++.+++....+..+.+........ . .... .........
T Consensus 2 ~~kl~ln~~--~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~------~~~~~~~~~ 67 (158)
T 2kn4_A 2 QYKLILNGK--TLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFT----V--TEGS------HHHHHHMDV 67 (158)
T ss_dssp EEEEEEECS--SCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEE----E--ECCC------CCSSCCCCC
T ss_pred cEEEEecCc--cccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCcccccc----c--cccc------cccccccCC
Confidence 355666643 5899999999999999999988876543333333321111000 0 0000 000011223
Q ss_pred CCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEec
Q psy2618 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG 277 (390)
Q Consensus 204 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 277 (390)
...++|||+|||..+++++|+++|+.||.|.++.++++ +|+|||+|.+.++|.+|++.||+..++|+.|.|.++
T Consensus 68 ~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 147 (158)
T 2kn4_A 68 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMA 147 (158)
T ss_dssp CBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 44678999999999999999999999999999999875 689999999999999999999999999999999999
Q ss_pred ccCCCC
Q psy2618 278 KESENN 283 (390)
Q Consensus 278 ~~~~~~ 283 (390)
++....
T Consensus 148 ~~~~~~ 153 (158)
T 2kn4_A 148 RYGRPP 153 (158)
T ss_dssp CCSSCC
T ss_pred CCCCCC
Confidence 876543
No 41
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.85 E-value=2e-21 Score=154.98 Aligned_cols=138 Identities=20% Similarity=0.348 Sum_probs=113.2
Q ss_pred CCCCcEEEEEecCHHHHHHHHHHh-cCceeCCeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEc
Q psy2618 134 LKSKGYAFVSFVKKAEAENAITAM-NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCG 212 (390)
Q Consensus 134 g~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 212 (390)
...+|+++|+|.+.++|++|++.+ ++..++| .+.+.++........... ..............++|||+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~---------~~~~~~~~~~~~~~~~l~V~ 79 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSH---------HHHHHMHRDSCPLDCKVYVG 79 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSS---------SCCCCSCSSSSTTSCEEEEE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccc---------cccccccccCCCCCCEEEEe
Confidence 357899999999999999999999 9999999 999997764321100000 00001112334456789999
Q ss_pred CCCCCCcHHHHHhhhcCCCceeEEEEecC-CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 213 GFGKDLNEELVSKVFSPFGTIVDIRVFKE-KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 213 ~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
|||..+++++|+++|++||.|.++.++++ +|+|||+|.+.++|.+|++.||+..++|+.|+|.+++++.
T Consensus 80 nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 149 (150)
T 2i2y_A 80 NLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVELSNGEK 149 (150)
T ss_dssp SCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEEECCCCC
T ss_pred CCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcCCCC
Confidence 99999999999999999999999999988 9999999999999999999999999999999999988763
No 42
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.85 E-value=2.9e-21 Score=146.31 Aligned_cols=110 Identities=29% Similarity=0.488 Sum_probs=74.8
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
...+|||+|||+++++++|+++|+.||.|.+++++++.. .++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~--~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDEN--GSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETT--EEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCC--CCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECC
Confidence 356899999999999999999999999999999999853 479999999999999999999999999999999999987
Q ss_pred CCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHH
Q psy2618 174 RKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEEL 222 (390)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~ 222 (390)
.+........ ......++|||+||+.++|++.
T Consensus 82 ~~~~~~~~~~-----------------~~~~~~~~lyv~Nl~~~~T~~a 113 (115)
T 4f25_A 82 SRKEREAELG-----------------ARAKEFTNVYIKNFGPGSTRAA 113 (115)
T ss_dssp CCCC---------------------------------------------
T ss_pred Cccccccccc-----------------cccCCCCceEeCCCCCCccccc
Confidence 6543222111 1112234699999999998763
No 43
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=135.30 Aligned_cols=81 Identities=28% Similarity=0.561 Sum_probs=77.6
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
..++|||+|||+++|+++|+++|++||.|.++.+++++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|+|+|+.
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 35689999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred C
Q psy2618 174 R 174 (390)
Q Consensus 174 ~ 174 (390)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 44
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.82 E-value=1.3e-20 Score=143.06 Aligned_cols=105 Identities=17% Similarity=0.250 Sum_probs=95.8
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
..+.++|||+|||.++++++|+++|+.||.|.+|.+..+..++|||||+|.+.++|.+|++.||+..+.|+.|.|.++.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 84 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNA 84 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCH
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecC
Confidence 45789999999999999999999999999999999998888899999999999999999999999999999999999975
Q ss_pred CCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCC
Q psy2618 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE 121 (390)
Q Consensus 84 ~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~ 121 (390)
.... .+++...++++|.++|++||.
T Consensus 85 ~~~~-------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 85 NRAF-------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp HHHT-------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred Chhh-------------hhhhHhHhHHHHHHHHHHhCC
Confidence 3322 577888899999999999985
No 45
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.82 E-value=4.5e-20 Score=135.44 Aligned_cols=78 Identities=33% Similarity=0.471 Sum_probs=72.9
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
..++|||+|||.++++++|+++|+.||+|.+|++.+++. ++|||||+|.+.++|++|++.||+..+.|++|+|++++
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~Ak 97 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYAR 97 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEee
Confidence 458999999999999999999999999999999998754 56899999999999999999999999999999999986
Q ss_pred C
Q psy2618 83 S 83 (390)
Q Consensus 83 ~ 83 (390)
+
T Consensus 98 P 98 (99)
T 4fxv_A 98 P 98 (99)
T ss_dssp B
T ss_pred C
Confidence 4
No 46
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.81 E-value=4.4e-20 Score=136.68 Aligned_cols=95 Identities=24% Similarity=0.379 Sum_probs=83.6
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQ 87 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~ 87 (390)
++|||+|||+++++++|+++|+.||+|.+|++..+ ++|||||+|.+.++|++|++.|++..+.|+.|.|.++......
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~~ 78 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMPRR 78 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCCCS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCCCc
Confidence 58999999999999999999999999999999887 6889999999999999999999999999999999999876543
Q ss_pred CCCC-----CCCceEEEEcCCC
Q psy2618 88 PKQD-----TSNHYHIFVGDLS 104 (390)
Q Consensus 88 ~~~~-----~~~~~~l~v~nl~ 104 (390)
.... .....+|||+||+
T Consensus 79 ~~~~~~~~~~~~~~~ifvg~L~ 100 (101)
T 2hvz_A 79 SRFDRPPARRKLLEVLFNGPLE 100 (101)
T ss_dssp SCCCSCCCSCCCCSCCCSCCCC
T ss_pred ccCCCCCccccCCCceecCCCC
Confidence 2221 2236789999996
No 47
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=5e-20 Score=143.42 Aligned_cols=124 Identities=25% Similarity=0.409 Sum_probs=83.6
Q ss_pred eEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEE
Q psy2618 48 YAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRI 127 (390)
Q Consensus 48 ~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~ 127 (390)
++|++|.+...+..|++.+++....|+. ...+ .....+....++|||+|||+++++++|+++|+.||.|..+.+
T Consensus 6 ~~~~~~~~~~~~~~a~~~~~g~~~~g~~-~~~~-----~~~~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i 79 (135)
T 2lea_A 6 HHHHHSSGLVPRGSHMASMTGGQQMGRG-SMSY-----GRPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYI 79 (135)
T ss_dssp ------------------------------CCS-----CCSCSSGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEEC
T ss_pred cccccccCCCchhhhhhhccCCCCCCCC-CCCc-----CCCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEE
Confidence 6889999999999999998887655543 1111 222344556789999999999999999999999999999999
Q ss_pred eeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCC
Q psy2618 128 VRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 128 ~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 177 (390)
+.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.....
T Consensus 80 ~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~~ 129 (135)
T 2lea_A 80 PRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRP 129 (135)
T ss_dssp CCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCCC
T ss_pred EecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCCC
Confidence 99988999999999999999999999999999999999999999986644
No 48
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=6.7e-19 Score=130.77 Aligned_cols=86 Identities=62% Similarity=0.948 Sum_probs=79.1
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
.++.+.++|||+|||+++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 89 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNW 89 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEE
Confidence 4677899999999999999999999999999999999998754 678999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy2618 81 ASSPGNQ 87 (390)
Q Consensus 81 ~~~~~~~ 87 (390)
+......
T Consensus 90 a~~~~~~ 96 (103)
T 2cqi_A 90 ATTPSSQ 96 (103)
T ss_dssp CCCTTCC
T ss_pred CCCCccc
Confidence 9875543
No 49
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.80 E-value=4.4e-19 Score=132.66 Aligned_cols=83 Identities=18% Similarity=0.257 Sum_probs=79.2
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
.+.++|||+||++++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a 83 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLD 83 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEC
Confidence 45689999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCC
Q psy2618 173 TRK 175 (390)
Q Consensus 173 ~~~ 175 (390)
...
T Consensus 84 ~~~ 86 (110)
T 3s8s_A 84 IKG 86 (110)
T ss_dssp STT
T ss_pred CCC
Confidence 654
No 50
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=2.5e-19 Score=130.87 Aligned_cols=81 Identities=16% Similarity=0.217 Sum_probs=73.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc--CeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN--KRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~--~~~~~g~~l~v~~~ 81 (390)
..+.++|||+|||+++++++|+++|+.||.|.+|+++++ ||||||+|.+.++|++|++.|+ +..+.|++|+|.++
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A 89 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFS 89 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEc
Confidence 467899999999999999999999999999999999875 6899999999999999999886 47899999999999
Q ss_pred CCCCCC
Q psy2618 82 SSPGNQ 87 (390)
Q Consensus 82 ~~~~~~ 87 (390)
..+...
T Consensus 90 ~~~~~~ 95 (105)
T 1sjq_A 90 NHKELK 95 (105)
T ss_dssp SSSSCC
T ss_pred CCCCCC
Confidence 875443
No 51
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=131.32 Aligned_cols=83 Identities=18% Similarity=0.344 Sum_probs=76.6
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCC-CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc-CceeCCeeEEEeec
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFG-EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN-GQWLGSRSIRTNWS 172 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~-~~~~~g~~i~v~~~ 172 (390)
+++|||+|||+++|+++|+++|+.|| .|.++++++++.+|+++|||||+|.+.++|.+|++.++ +..+.|+.|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 47899999999999999999999999 79999999999999999999999999999999998874 56799999999999
Q ss_pred CCCCC
Q psy2618 173 TRKPP 177 (390)
Q Consensus 173 ~~~~~ 177 (390)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87643
No 52
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.9e-19 Score=131.25 Aligned_cols=84 Identities=20% Similarity=0.363 Sum_probs=78.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..+..+++||||+|.+.++|++|++.||+..+.|+.|+|.++.
T Consensus 18 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~ 97 (109)
T 1x4a_A 18 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPR 97 (109)
T ss_dssp CCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcc
Confidence 45678999999999999999999999999999999998887789999999999999999999999999999999999998
Q ss_pred CCCC
Q psy2618 83 SPGN 86 (390)
Q Consensus 83 ~~~~ 86 (390)
....
T Consensus 98 ~~~~ 101 (109)
T 1x4a_A 98 SGRG 101 (109)
T ss_dssp CCCC
T ss_pred cCCC
Confidence 7544
No 53
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-19 Score=131.10 Aligned_cols=80 Identities=16% Similarity=0.292 Sum_probs=71.6
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccC-CceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhc-CeeeccceeeEeec
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIG-PVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMN-KRVFLEKEMKVNWA 81 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G-~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~-~~~~~g~~l~v~~~ 81 (390)
+++|||+|||.++++++|+++|+.|| .|.+|++++++. ++|||||+|.+.++|++|++.++ +..+.|++|.|.++
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a 80 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYS 80 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEc
Confidence 57999999999999999999999999 899999987753 78999999999999999999874 56799999999999
Q ss_pred CCCCC
Q psy2618 82 SSPGN 86 (390)
Q Consensus 82 ~~~~~ 86 (390)
.++..
T Consensus 81 ~~~~~ 85 (91)
T 2lxi_A 81 DPKPK 85 (91)
T ss_dssp CSCCC
T ss_pred CCCCC
Confidence 87543
No 54
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.5e-19 Score=129.53 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=74.9
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhc--CceecCeEEEEEecccC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIH--NTDINGHTVKCFWGKES 280 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~--~~~~~g~~i~v~~~~~~ 280 (390)
..+.++|||+|||.++++++|+++|++||.|+++.++++||+|||+|.+.++|.+|++.++ +..++|+.|.|.|++.+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~ 92 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 92 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCC
Confidence 4456789999999999999999999999999999999999999999999999999999886 47899999999999877
Q ss_pred CCCC
Q psy2618 281 ENNS 284 (390)
Q Consensus 281 ~~~~ 284 (390)
....
T Consensus 93 ~~~~ 96 (105)
T 1sjq_A 93 ELKT 96 (105)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6544
No 55
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.79 E-value=3.1e-19 Score=129.26 Aligned_cols=82 Identities=18% Similarity=0.477 Sum_probs=75.7
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCC--eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCc----eeCCee
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGE--ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ----WLGSRS 166 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~--i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g~~ 166 (390)
..=.+|||+|||+++|+++|+++|++||. |.+|++++|+.+|+++|||||+|.+.++|.+|++.|++. .++||.
T Consensus 7 ~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~ 86 (95)
T 2lkz_A 7 HHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKT 86 (95)
T ss_dssp CCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEE
T ss_pred CccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEE
Confidence 34478999999999999999999999995 679999999999999999999999999999999999986 589999
Q ss_pred EEEeecCC
Q psy2618 167 IRTNWSTR 174 (390)
Q Consensus 167 i~v~~~~~ 174 (390)
|.|+|+..
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999863
No 56
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.79 E-value=8.5e-19 Score=126.67 Aligned_cols=80 Identities=21% Similarity=0.300 Sum_probs=74.2
Q ss_pred CCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCce--ecCeEEEEEeccc
Q psy2618 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTD--INGHTVKCFWGKE 279 (390)
Q Consensus 202 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~~~ 279 (390)
..+++++|||+|||.++++++|+++|++||.|+++.++++||+|||+|.+.++|.+|++.|++.. +.|+.|.|.|++.
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~ 96 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTS 96 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccc
Confidence 34567789999999999999999999999999999999999999999999999999999999875 7899999999987
Q ss_pred CC
Q psy2618 280 SE 281 (390)
Q Consensus 280 ~~ 281 (390)
+.
T Consensus 97 k~ 98 (100)
T 3r27_A 97 QK 98 (100)
T ss_dssp SC
T ss_pred cc
Confidence 64
No 57
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.79 E-value=5.4e-19 Score=132.14 Aligned_cols=80 Identities=13% Similarity=0.164 Sum_probs=75.2
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
..+.++|||+|||+++++++|+++|++||.|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 3 ~~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~ 82 (110)
T 3s8s_A 3 QIPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQL 82 (110)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 46889999999999999999999999999999999998864 578999999999999999999999999999999999
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
+..
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.1e-18 Score=128.09 Aligned_cols=86 Identities=21% Similarity=0.308 Sum_probs=78.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
...+.++|||+|||+++++++|+++|+.||.|.+|++..+.. +++||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 90 (103)
T 2cq3_A 11 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 90 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEc
Confidence 456789999999999999999999999999999999987754 6889999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy2618 82 SSPGNQP 88 (390)
Q Consensus 82 ~~~~~~~ 88 (390)
.......
T Consensus 91 ~~~~~~~ 97 (103)
T 2cq3_A 91 TARVMTN 97 (103)
T ss_dssp CSSCCCC
T ss_pred ccCCCCC
Confidence 8765443
No 59
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=132.02 Aligned_cols=86 Identities=28% Similarity=0.508 Sum_probs=79.8
Q ss_pred CCCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 1 ~~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
|.+..+.++|||+|||.++++++|+++|+.||.|.+|++..+++ ++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 1 m~e~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V 80 (116)
T 2fy1_A 1 MVEADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKV 80 (116)
T ss_dssp CCTTCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 56788999999999999999999999999999999999998753 5789999999999999999999999999999999
Q ss_pred eecCCCCC
Q psy2618 79 NWASSPGN 86 (390)
Q Consensus 79 ~~~~~~~~ 86 (390)
.++.....
T Consensus 81 ~~a~~~~~ 88 (116)
T 2fy1_A 81 EQAKKPSF 88 (116)
T ss_dssp EECCCSSC
T ss_pred EECCCCCC
Confidence 99987554
No 60
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=128.20 Aligned_cols=86 Identities=26% Similarity=0.335 Sum_probs=78.7
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
++..+.++|||+|||+++++++|+++|+.||+|.+|++..++ .++|||||+|.+.++|++|++.||+..+.|+.|.|
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHV 82 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 356789999999999999999999999999999999998765 26789999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy2618 79 NWASSPGNQ 87 (390)
Q Consensus 79 ~~~~~~~~~ 87 (390)
.++......
T Consensus 83 ~~a~~~~~~ 91 (99)
T 1whw_A 83 LPSTIKKEA 91 (99)
T ss_dssp EECCCCSTT
T ss_pred EEcCCCccc
Confidence 999886554
No 61
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.78 E-value=5.5e-19 Score=127.94 Aligned_cols=81 Identities=17% Similarity=0.269 Sum_probs=73.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCC--ceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCe----eecc
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGP--VKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKR----VFLE 73 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~--v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~----~~~g 73 (390)
++..-.||||+|||+++|+++|+++|+.||. |.+|++.+|+. ++|||||+|.+.++|.+|++.||+. .+.|
T Consensus 5 ~~~~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G 84 (95)
T 2lkz_A 5 HHHHMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG 84 (95)
T ss_dssp SSCCCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT
T ss_pred cCCccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC
Confidence 4567889999999999999999999999995 67999988753 7899999999999999999999986 4889
Q ss_pred ceeeEeecCC
Q psy2618 74 KEMKVNWASS 83 (390)
Q Consensus 74 ~~l~v~~~~~ 83 (390)
++|.|+++++
T Consensus 85 r~i~V~~Aks 94 (95)
T 2lkz_A 85 KTIGVDFAKS 94 (95)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEEccC
Confidence 9999999975
No 62
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.78 E-value=6.7e-19 Score=122.24 Aligned_cols=73 Identities=21% Similarity=0.218 Sum_probs=69.3
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.-|+|+||++.+++++|+++|.+||+|.++.+.. ++|||||+|.+.++|++|++.||+..+.|++|+|+++
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~---~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A 78 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL---NQGIALCKYTTREEANKAQMALNNCVLANTTIFAESP 78 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC---CCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEEC
Confidence 577899999999999999999999999999999865 6889999999999999999999999999999999977
No 63
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.78 E-value=1.2e-18 Score=125.83 Aligned_cols=79 Identities=19% Similarity=0.213 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCee--eccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRV--FLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~--~~g~~l~v~~ 80 (390)
...++++|||+|||.++++++|+++|+.||.|.+|++++ .||+|||+|.+.++|.+|++.|++.. +.|++|.|.+
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~---~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~ 93 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMP---KKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNY 93 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEE
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEe
Confidence 456899999999999999999999999999999999875 46799999999999999999998875 7899999999
Q ss_pred cCCC
Q psy2618 81 ASSP 84 (390)
Q Consensus 81 ~~~~ 84 (390)
++.+
T Consensus 94 S~~k 97 (100)
T 3r27_A 94 STSQ 97 (100)
T ss_dssp CSCS
T ss_pred cccc
Confidence 9763
No 64
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=9.6e-19 Score=141.52 Aligned_cols=127 Identities=23% Similarity=0.353 Sum_probs=80.5
Q ss_pred EEEccHHHHHHHHHHhcCeeec--cceeeEeecCCC---------------CCCCCCCCCCceEEEEcCCCcccCHHHHH
Q psy2618 51 LEFVHHTVAATALAAMNKRVFL--EKEMKVNWASSP---------------GNQPKQDTSNHYHIFVGDLSPEIETQTLK 113 (390)
Q Consensus 51 V~F~~~~~A~~a~~~l~~~~~~--g~~l~v~~~~~~---------------~~~~~~~~~~~~~l~v~nl~~~~~~~~l~ 113 (390)
.+|.+.++|+.|+..|++.... |+.+...++... ...........++|||+|||+.+++++|+
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~ 90 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYERVRNEDDDELEPGPQRSVEGWILFVTSIHEEAQEDEIQ 90 (165)
T ss_dssp -------------------------------------------------------CCCCC-CEEEEEESCCTTCCHHHHH
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccccccCCCCCCCCCCCCCCCCCEEEEeCCCCCCCHHHHH
Confidence 7899999999999999887655 444444442210 01112233456889999999999999999
Q ss_pred HHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCCC
Q psy2618 114 EAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177 (390)
Q Consensus 114 ~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 177 (390)
++|+.||.|..|.++.++.+|.++|||||+|.+.++|..|++.|++..+.|+.|.|.|+..+..
T Consensus 91 ~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 154 (165)
T 1rk8_A 91 EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 154 (165)
T ss_dssp HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC-
T ss_pred HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999976654
No 65
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=129.96 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcC--eeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNK--RVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~--~~~~g~~l~v~~ 80 (390)
...++++|||+|||+++++++|+++|+.||.|.+|+++++ +|||||+|++.++|++|++.+++ ..+.|++|+|.+
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~ 103 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQF 103 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEE
Confidence 3467899999999999999999999999999999999876 67999999999999999998874 679999999999
Q ss_pred cCCCCCCC
Q psy2618 81 ASSPGNQP 88 (390)
Q Consensus 81 ~~~~~~~~ 88 (390)
+.......
T Consensus 104 a~~k~~~~ 111 (119)
T 2ad9_A 104 SNHKELKT 111 (119)
T ss_dssp CSSSSCCC
T ss_pred ccCCCCCc
Confidence 98755443
No 66
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=126.37 Aligned_cols=82 Identities=17% Similarity=0.222 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCChhccHHHHH----HHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLC----ALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~----~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
..+.++|||+|||+++++++|+ ++|+.||.|.+|++..++..++||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 6 ~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~ 85 (96)
T 2dgx_A 6 SGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVS 85 (96)
T ss_dssp CSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 3567899999999999999999 999999999999999887668999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 80 WASSPG 85 (390)
Q Consensus 80 ~~~~~~ 85 (390)
++....
T Consensus 86 ~a~~~~ 91 (96)
T 2dgx_A 86 LATGAS 91 (96)
T ss_dssp ECCCSS
T ss_pred EcCCCC
Confidence 997643
No 67
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.77 E-value=5.7e-18 Score=128.44 Aligned_cols=91 Identities=69% Similarity=1.134 Sum_probs=84.3
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
..+....++|||+|||+++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (115)
T 2dgo_A 9 KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIR 88 (115)
T ss_dssp CCCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 44566789999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q psy2618 169 TNWSTRKPPAM 179 (390)
Q Consensus 169 v~~~~~~~~~~ 179 (390)
|.++..+....
T Consensus 89 V~~a~~~~~~~ 99 (115)
T 2dgo_A 89 TNWATRKPPAP 99 (115)
T ss_dssp EEESSCCCCCS
T ss_pred EEEccCCCCCC
Confidence 99998775543
No 68
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.9e-18 Score=125.55 Aligned_cols=81 Identities=20% Similarity=0.229 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc--CeeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN--KRVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~--~~~~~g~~l~v~~ 80 (390)
...++++|||+|||+++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|.+|++.|+ +..+.|++|.|.+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~ 87 (101)
T 2cq1_A 11 DGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQY 87 (101)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEE
Confidence 3467899999999999999999999999999999988765 7899999999999999999874 6789999999999
Q ss_pred cCCCCC
Q psy2618 81 ASSPGN 86 (390)
Q Consensus 81 ~~~~~~ 86 (390)
+.....
T Consensus 88 a~~~~~ 93 (101)
T 2cq1_A 88 SNHKEL 93 (101)
T ss_dssp CSCSSC
T ss_pred cCcccC
Confidence 986543
No 69
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.77 E-value=1.5e-18 Score=124.11 Aligned_cols=80 Identities=28% Similarity=0.432 Sum_probs=74.2
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||.++++++|+++|+.||.|.+|++..+.. ++|||||+|.+.++|.+|++.||+..+.|+.|+|+
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 82 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 82 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 467899999999999999999999999999999999987743 57899999999999999999999999999999999
Q ss_pred ecC
Q psy2618 80 WAS 82 (390)
Q Consensus 80 ~~~ 82 (390)
+++
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 874
No 70
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-18 Score=126.35 Aligned_cols=89 Identities=29% Similarity=0.515 Sum_probs=83.1
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
..+....++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 88 (103)
T 2cq0_A 9 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILN 88 (103)
T ss_dssp CCCCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEE
Confidence 34566789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.++..+..
T Consensus 89 v~~a~~~~~ 97 (103)
T 2cq0_A 89 VEWAKPSTN 97 (103)
T ss_dssp EEESSCCCC
T ss_pred EEECCCCCC
Confidence 999987644
No 71
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=126.06 Aligned_cols=85 Identities=19% Similarity=0.335 Sum_probs=77.6
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.+..+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++ |++..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 3567889999999999999999999999999999999988753 67999999999999999998 9999999999999
Q ss_pred eecCCCCCC
Q psy2618 79 NWASSPGNQ 87 (390)
Q Consensus 79 ~~~~~~~~~ 87 (390)
.++.+....
T Consensus 84 ~~a~~~~~~ 92 (99)
T 2dgs_A 84 KRAEPRDSK 92 (99)
T ss_dssp EECCCCCCC
T ss_pred EECCCCccc
Confidence 999876543
No 72
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.77 E-value=1.6e-18 Score=124.47 Aligned_cols=83 Identities=65% Similarity=1.096 Sum_probs=77.1
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
.+.++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 45689999999999999999999999999999999999889999999999999999999999999999999999999998
Q ss_pred CCC
Q psy2618 173 TRK 175 (390)
Q Consensus 173 ~~~ 175 (390)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 764
No 73
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.77 E-value=3.4e-18 Score=121.58 Aligned_cols=81 Identities=38% Similarity=0.709 Sum_probs=77.8
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
.+|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 81 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKL 81 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999865
Q ss_pred C
Q psy2618 176 P 176 (390)
Q Consensus 176 ~ 176 (390)
.
T Consensus 82 ~ 82 (83)
T 3md1_A 82 E 82 (83)
T ss_dssp C
T ss_pred C
Confidence 3
No 74
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.1e-18 Score=124.55 Aligned_cols=83 Identities=24% Similarity=0.472 Sum_probs=76.8
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|++|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 5789999999999999999999999999999999998753 6789999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy2618 82 SSPGNQ 87 (390)
Q Consensus 82 ~~~~~~ 87 (390)
..+...
T Consensus 83 ~~~~~~ 88 (95)
T 2dnz_A 83 TERLDG 88 (95)
T ss_dssp SCCCCC
T ss_pred ccccCC
Confidence 876543
No 75
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=5.1e-18 Score=124.96 Aligned_cols=87 Identities=18% Similarity=0.429 Sum_probs=81.1
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.+....++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++ +++..+.|+.|.|
T Consensus 5 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V 83 (99)
T 2dgs_A 5 SSGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEV 83 (99)
T ss_dssp CCCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEE
Confidence 345667999999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred eecCCCCC
Q psy2618 170 NWSTRKPP 177 (390)
Q Consensus 170 ~~~~~~~~ 177 (390)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2dgs_A 84 KRAEPRDS 91 (99)
T ss_dssp EECCCCCC
T ss_pred EECCCCcc
Confidence 99987654
No 76
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.7e-18 Score=125.48 Aligned_cols=79 Identities=20% Similarity=0.286 Sum_probs=72.8
Q ss_pred CCcceeEEcCCCC-CCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCc--eecCeEEEEEecccC
Q psy2618 204 PTNCTVYCGGFGK-DLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNT--DINGHTVKCFWGKES 280 (390)
Q Consensus 204 ~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~~~~~ 280 (390)
.++++|||+|||. .+++++|+++|++||.|+++.+++++++|||+|.+.++|.+|++.|++. .+.|+.|.|.+++..
T Consensus 13 ~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 13 ETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp CCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 3567899999999 9999999999999999999999999999999999999999999998864 599999999999865
Q ss_pred CC
Q psy2618 281 EN 282 (390)
Q Consensus 281 ~~ 282 (390)
..
T Consensus 93 ~~ 94 (102)
T 1x4d_A 93 KR 94 (102)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 77
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.2e-18 Score=125.45 Aligned_cols=87 Identities=30% Similarity=0.397 Sum_probs=81.9
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
...+.++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 83 (99)
T 1whw_A 4 GSSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVL 83 (99)
T ss_dssp CCCSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567999999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 171 WSTRKPP 177 (390)
Q Consensus 171 ~~~~~~~ 177 (390)
++..+..
T Consensus 84 ~a~~~~~ 90 (99)
T 1whw_A 84 PSTIKKE 90 (99)
T ss_dssp ECCCCST
T ss_pred EcCCCcc
Confidence 9987654
No 78
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=2.3e-18 Score=126.96 Aligned_cols=81 Identities=17% Similarity=0.130 Sum_probs=72.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCe--eeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKR--VFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~--~~~g~~l~v~~ 80 (390)
...++++|||+|||+++++++|+++|+.||.|.+|++.++ ||||||+|.+.++|++|++.|++. .+.|++|+|.+
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~ 87 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF---KRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNY 87 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEE
Confidence 3567899999999999999999999999999999998764 679999999999999999988754 58999999999
Q ss_pred cCCCCC
Q psy2618 81 ASSPGN 86 (390)
Q Consensus 81 ~~~~~~ 86 (390)
+..+..
T Consensus 88 a~~~~~ 93 (104)
T 1wex_A 88 STSKRI 93 (104)
T ss_dssp CSSSSC
T ss_pred ccCccc
Confidence 987543
No 79
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=2.4e-18 Score=126.97 Aligned_cols=83 Identities=22% Similarity=0.312 Sum_probs=76.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 92 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAI 92 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 456789999999999999999999999999999999998764 458999999999999999999999999999999999
Q ss_pred cCCCC
Q psy2618 81 ASSPG 85 (390)
Q Consensus 81 ~~~~~ 85 (390)
+.+..
T Consensus 93 a~~~~ 97 (100)
T 2do4_A 93 SNSGP 97 (100)
T ss_dssp CCCCS
T ss_pred CCCCC
Confidence 98754
No 80
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.3e-18 Score=124.42 Aligned_cols=85 Identities=33% Similarity=0.567 Sum_probs=80.6
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
.+.++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 82 (95)
T 2dnz_A 3 SGSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHV 82 (95)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEES
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEc
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy2618 173 TRKPP 177 (390)
Q Consensus 173 ~~~~~ 177 (390)
..+..
T Consensus 83 ~~~~~ 87 (95)
T 2dnz_A 83 TERLD 87 (95)
T ss_dssp SCCCC
T ss_pred ccccC
Confidence 87654
No 81
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.77 E-value=1.6e-18 Score=120.28 Aligned_cols=74 Identities=18% Similarity=0.263 Sum_probs=70.8
Q ss_pred cceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 206 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
+.-|||+||+..+|+++|+++|.+||+|+++++..+||||||+|.+.++|.+|++.||+..+.|+.|+|.++..
T Consensus 7 ~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~e 80 (89)
T 2wbr_A 7 SSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPSE 80 (89)
T ss_dssp CCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCCH
T ss_pred cceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECCH
Confidence 45699999999999999999999999999999999999999999999999999999999999999999999854
No 82
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.77 E-value=2.2e-18 Score=130.71 Aligned_cols=86 Identities=20% Similarity=0.298 Sum_probs=77.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..++. +++||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 100 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQ 100 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 445779999999999999999999999999999999998763 46899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q psy2618 80 WASSPGNQP 88 (390)
Q Consensus 80 ~~~~~~~~~ 88 (390)
++.+.....
T Consensus 101 ~a~~~~~~~ 109 (115)
T 2cpz_A 101 LKRSKNDSK 109 (115)
T ss_dssp CCCCSCCCC
T ss_pred EcCCCCcCC
Confidence 998765543
No 83
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.9e-18 Score=128.24 Aligned_cols=85 Identities=28% Similarity=0.327 Sum_probs=77.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 88 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQ 88 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 456789999999999999999999999999999999987743 67899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dnm_A 89 VARYGRRD 96 (103)
T ss_dssp ECSSCCSC
T ss_pred ECCcCCCC
Confidence 99875443
No 84
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=8.3e-18 Score=123.13 Aligned_cols=82 Identities=17% Similarity=0.277 Sum_probs=74.7
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHh--cCceecCeEEEEEecccC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESI--HNTDINGHTVKCFWGKES 280 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l--~~~~~~g~~i~v~~~~~~ 280 (390)
.+++++|||+|||..+++++|+++|++||.|+++.++++||+|||+|.+.++|.+|++.| ++..+.|+.|.|.|++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 91 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHK 91 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCcc
Confidence 345678999999999999999999999999999999999999999999999999999987 467899999999999877
Q ss_pred CCCC
Q psy2618 281 ENNS 284 (390)
Q Consensus 281 ~~~~ 284 (390)
....
T Consensus 92 ~~~~ 95 (101)
T 2cq1_A 92 ELKT 95 (101)
T ss_dssp SCCC
T ss_pred cCcC
Confidence 6543
No 85
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=2.6e-18 Score=127.37 Aligned_cols=86 Identities=26% Similarity=0.383 Sum_probs=77.9
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 356789999999999999999999999999999999987743 67899999999999999999999999999999999
Q ss_pred ecCCCCCCC
Q psy2618 80 WASSPGNQP 88 (390)
Q Consensus 80 ~~~~~~~~~ 88 (390)
++.+.....
T Consensus 88 ~a~~~~~~~ 96 (102)
T 2cqb_A 88 LAKPMRIKE 96 (102)
T ss_dssp ECCCCCCCC
T ss_pred eCCCCCCCC
Confidence 998765443
No 86
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.6e-18 Score=126.76 Aligned_cols=80 Identities=13% Similarity=0.142 Sum_probs=72.1
Q ss_pred CCCCCCeEEEeCCCh-hccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcC--eeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDV-SVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNK--RVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~--~~~~g~~l~v~ 79 (390)
...++++|||+|||+ ++++++|+++|+.||.|.+|+++++ ++||||+|.+.++|++|++.|++ ..+.|++|.|.
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~ 87 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNK---INEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVH 87 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSS---SSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEE
Confidence 345889999999999 9999999999999999999999865 46999999999999999999885 45999999999
Q ss_pred ecCCCC
Q psy2618 80 WASSPG 85 (390)
Q Consensus 80 ~~~~~~ 85 (390)
++....
T Consensus 88 ~a~~~~ 93 (102)
T 1x4d_A 88 LSQKYK 93 (102)
T ss_dssp EECCCT
T ss_pred ECCCCC
Confidence 998643
No 87
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5e-18 Score=124.09 Aligned_cols=87 Identities=30% Similarity=0.425 Sum_probs=81.4
Q ss_pred CCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 88 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
...+....++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 8 ~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 87 (95)
T 2cqc_A 8 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRI 87 (95)
T ss_dssp CCCSCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEeecCC
Q psy2618 168 RTNWSTR 174 (390)
Q Consensus 168 ~v~~~~~ 174 (390)
.|.++..
T Consensus 88 ~v~~a~~ 94 (95)
T 2cqc_A 88 RVSGPSS 94 (95)
T ss_dssp EEECCSC
T ss_pred EEEecCC
Confidence 9999864
No 88
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=2.5e-18 Score=125.89 Aligned_cols=80 Identities=28% Similarity=0.472 Sum_probs=74.6
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
++++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 80 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSS 80 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECS
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcC
Confidence 579999999999999999999999999999999988743 57999999999999999999999999999999999998
Q ss_pred CCC
Q psy2618 83 SPG 85 (390)
Q Consensus 83 ~~~ 85 (390)
...
T Consensus 81 ~~~ 83 (96)
T 2x1f_A 81 NSD 83 (96)
T ss_dssp CSS
T ss_pred CCC
Confidence 743
No 89
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=3.5e-18 Score=124.66 Aligned_cols=80 Identities=25% Similarity=0.402 Sum_probs=74.0
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||.++++++|+++|+.||+|.+|++..++. +++||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 346789999999999999999999999999999999988743 67899999999999999999999999999999999
Q ss_pred ecC
Q psy2618 80 WAS 82 (390)
Q Consensus 80 ~~~ 82 (390)
+++
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 874
No 90
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.7e-18 Score=125.74 Aligned_cols=84 Identities=29% Similarity=0.568 Sum_probs=76.6
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEE-EEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGC-KVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v-~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
..+.++|||+|||.++++++|+++|+.||.|.+| ++..++. ++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 81 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVS 81 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 3578999999999999999999999999999999 8887743 67899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++.+....
T Consensus 82 ~a~~~~~~ 89 (96)
T 1x5t_A 82 YAFKKDSK 89 (96)
T ss_dssp ESCCCCCC
T ss_pred EecccCCC
Confidence 99876543
No 91
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=127.14 Aligned_cols=85 Identities=24% Similarity=0.406 Sum_probs=77.7
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++. +++||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356889999999999999999999999999999999988653 67899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++......
T Consensus 88 ~a~~~~~~ 95 (102)
T 1x5s_A 88 QAGKSSDN 95 (102)
T ss_dssp EEECCCCC
T ss_pred ECCCCCCC
Confidence 99876543
No 92
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1.9e-18 Score=127.02 Aligned_cols=84 Identities=24% Similarity=0.446 Sum_probs=76.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC------CCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG------NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~------~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
..+.++|||+|||+++++++|+++|+.||.|.+|++..+.. ++|||||+|.+.++|++|++.|++..+.|+.|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 81 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLE 81 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEE
Confidence 36789999999999999999999999999999999987653 467999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q psy2618 78 VNWASSPGNQ 87 (390)
Q Consensus 78 v~~~~~~~~~ 87 (390)
|.++......
T Consensus 82 V~~a~~~~~~ 91 (98)
T 2cpf_A 82 VRISERATKP 91 (98)
T ss_dssp EECSSCSSCC
T ss_pred EEEccCCCCC
Confidence 9999875543
No 93
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.2e-18 Score=127.09 Aligned_cols=86 Identities=29% Similarity=0.408 Sum_probs=77.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC-CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~-~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+..+.++|||+|||+++++++|+++|+.||.|.+|++..+. .+++||||+|.+.++|++|++.||+..+.|+.|.|.++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a 90 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 90 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45688999999999999999999999999999999999872 25689999999999999999999999999999999999
Q ss_pred CCCCCCC
Q psy2618 82 SSPGNQP 88 (390)
Q Consensus 82 ~~~~~~~ 88 (390)
.......
T Consensus 91 ~~~~~~~ 97 (103)
T 2d9p_A 91 QRKEERQ 97 (103)
T ss_dssp SSCCCCC
T ss_pred cccccCC
Confidence 8765543
No 94
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.5e-18 Score=126.04 Aligned_cols=87 Identities=34% Similarity=0.529 Sum_probs=81.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
...+.++|||+|||+++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 87 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 171 WSTRKPP 177 (390)
Q Consensus 171 ~~~~~~~ 177 (390)
++.+...
T Consensus 88 ~a~~~~~ 94 (102)
T 2cqb_A 88 LAKPMRI 94 (102)
T ss_dssp ECCCCCC
T ss_pred eCCCCCC
Confidence 9987654
No 95
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.76 E-value=1.8e-18 Score=124.20 Aligned_cols=80 Identities=21% Similarity=0.485 Sum_probs=72.0
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 83 (87)
T 3bs9_A 4 GSHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWA 83 (87)
T ss_dssp --CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEec
Confidence 5688999999999999999999999999999999998753 4689999999999999999999999999999999999
Q ss_pred CCC
Q psy2618 82 SSP 84 (390)
Q Consensus 82 ~~~ 84 (390)
.++
T Consensus 84 ~~k 86 (87)
T 3bs9_A 84 TRK 86 (87)
T ss_dssp C--
T ss_pred CCC
Confidence 753
No 96
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=8.5e-18 Score=124.02 Aligned_cols=85 Identities=22% Similarity=0.403 Sum_probs=79.8
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||.++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNR-AGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 44567899999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
++.++.
T Consensus 92 ~a~~~~ 97 (100)
T 2do4_A 92 ISNSGP 97 (100)
T ss_dssp ECCCCS
T ss_pred ECCCCC
Confidence 998664
No 97
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3.6e-18 Score=126.77 Aligned_cols=89 Identities=26% Similarity=0.475 Sum_probs=82.7
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
..+....++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELR 86 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCE
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEE
Confidence 34556679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.++.....
T Consensus 87 V~~a~~~~~ 95 (103)
T 2dnm_A 87 VQVARYGRR 95 (103)
T ss_dssp EEECSSCCS
T ss_pred EEECCcCCC
Confidence 999986543
No 98
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4e-18 Score=127.07 Aligned_cols=86 Identities=34% Similarity=0.505 Sum_probs=78.5
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.+..+.++|||+|||+++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 89 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRV 89 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 3567889999999999999999999999999999999988653 6789999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy2618 79 NWASSPGNQ 87 (390)
Q Consensus 79 ~~~~~~~~~ 87 (390)
.++......
T Consensus 90 ~~a~~~~~~ 98 (105)
T 1x5u_A 90 NKASAHNKN 98 (105)
T ss_dssp EETTTTSCC
T ss_pred EECCCCCcC
Confidence 999875543
No 99
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=2.8e-18 Score=127.42 Aligned_cols=84 Identities=24% Similarity=0.357 Sum_probs=77.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||.++++++|+++|+.||+|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVE 90 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 466789999999999999999999999999999999998753 56899999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 80 WASSPGN 86 (390)
Q Consensus 80 ~~~~~~~ 86 (390)
++.....
T Consensus 91 ~a~~~~~ 97 (103)
T 2cq0_A 91 WAKPSTN 97 (103)
T ss_dssp ESSCCCC
T ss_pred ECCCCCC
Confidence 9987544
No 100
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=5.6e-18 Score=126.26 Aligned_cols=89 Identities=26% Similarity=0.410 Sum_probs=83.0
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.......++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 88 (105)
T 1x5u_A 9 ISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIR 88 (105)
T ss_dssp CCCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 44556789999999999999999999999999999999999998999999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.++.....
T Consensus 89 v~~a~~~~~ 97 (105)
T 1x5u_A 89 VNKASAHNK 97 (105)
T ss_dssp EEETTTTSC
T ss_pred EEECCCCCc
Confidence 999987644
No 101
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.76 E-value=4.6e-18 Score=128.95 Aligned_cols=85 Identities=24% Similarity=0.463 Sum_probs=77.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (115)
T 2dgo_A 11 DTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 90 (115)
T ss_dssp CSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 457889999999999999999999999999999999998753 46899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++......
T Consensus 91 ~a~~~~~~ 98 (115)
T 2dgo_A 91 WATRKPPA 98 (115)
T ss_dssp ESSCCCCC
T ss_pred EccCCCCC
Confidence 99876544
No 102
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=3.1e-18 Score=128.22 Aligned_cols=82 Identities=23% Similarity=0.367 Sum_probs=76.1
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 25 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 104 (109)
T 2err_A 25 NKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNA 104 (109)
T ss_dssp CTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEC
Confidence 456789999999999999999999999999999999987754 6899999999999999999999999999999999998
Q ss_pred CCC
Q psy2618 82 SSP 84 (390)
Q Consensus 82 ~~~ 84 (390)
..+
T Consensus 105 ~~~ 107 (109)
T 2err_A 105 TAR 107 (109)
T ss_dssp CCS
T ss_pred CCC
Confidence 763
No 103
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.76 E-value=5.1e-18 Score=128.67 Aligned_cols=88 Identities=28% Similarity=0.481 Sum_probs=82.0
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||+++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 20 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 99 (115)
T 2cpz_A 20 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKV 99 (115)
T ss_dssp CCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEE
T ss_pred cCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34456789999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred eecCCCCC
Q psy2618 170 NWSTRKPP 177 (390)
Q Consensus 170 ~~~~~~~~ 177 (390)
.++.++..
T Consensus 100 ~~a~~~~~ 107 (115)
T 2cpz_A 100 QLKRSKND 107 (115)
T ss_dssp ECCCCSCC
T ss_pred EEcCCCCc
Confidence 99987654
No 104
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=5.9e-18 Score=122.23 Aligned_cols=80 Identities=25% Similarity=0.424 Sum_probs=74.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
...+.++|||+|||.++++++|+++|+.||.|.+|++. ++||||+|.+.++|++|++.|++..+.|++|+|.++.
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~ 78 (90)
T 2dnq_A 4 GSSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASK 78 (90)
T ss_dssp CSSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSS
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECC
Confidence 46789999999999999999999999999999999987 5799999999999999999999999999999999998
Q ss_pred CCCCC
Q psy2618 83 SPGNQ 87 (390)
Q Consensus 83 ~~~~~ 87 (390)
.....
T Consensus 79 ~~~~~ 83 (90)
T 2dnq_A 79 NKSKA 83 (90)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 76543
No 105
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.76 E-value=4.8e-18 Score=124.30 Aligned_cols=83 Identities=27% Similarity=0.496 Sum_probs=79.2
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
+++|||+|||.++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 2 ~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 81 (96)
T 2x1f_A 2 SRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSN 81 (96)
T ss_dssp CSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSC
T ss_pred CcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCC
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCC
Q psy2618 175 KPP 177 (390)
Q Consensus 175 ~~~ 177 (390)
+..
T Consensus 82 ~~~ 84 (96)
T 2x1f_A 82 SDI 84 (96)
T ss_dssp SSG
T ss_pred CCC
Confidence 643
No 106
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.76 E-value=4.1e-18 Score=122.64 Aligned_cols=81 Identities=26% Similarity=0.356 Sum_probs=74.8
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC----CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG----NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~----~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
...++|||+|||.++++++|+++|+.||.|.+|++..+.. ++|+|||+|.+.++|.+|++.||+..+.|+.|.|.+
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 81 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATA 81 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEE
Confidence 3578999999999999999999999999999999988763 678999999999999999999999999999999999
Q ss_pred cCCCC
Q psy2618 81 ASSPG 85 (390)
Q Consensus 81 ~~~~~ 85 (390)
+.+..
T Consensus 82 a~~~~ 86 (88)
T 4a8x_A 82 VLAPW 86 (88)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 97643
No 107
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=1e-17 Score=122.15 Aligned_cols=83 Identities=28% Similarity=0.465 Sum_probs=78.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 91 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKAS 91 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 44567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecC
Q psy2618 171 WST 173 (390)
Q Consensus 171 ~~~ 173 (390)
++.
T Consensus 92 ~ak 94 (94)
T 2e5h_A 92 IAI 94 (94)
T ss_dssp ECC
T ss_pred ecC
Confidence 873
No 108
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=4.3e-18 Score=124.68 Aligned_cols=85 Identities=42% Similarity=0.740 Sum_probs=80.3
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEE-EEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
.+.++|||+|||.++++++|+++|+.||.|..+ .+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 82 (96)
T 1x5t_A 3 SGSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSY 82 (96)
T ss_dssp SCCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEE
Confidence 457899999999999999999999999999999 9999989999999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy2618 172 STRKPP 177 (390)
Q Consensus 172 ~~~~~~ 177 (390)
+..+..
T Consensus 83 a~~~~~ 88 (96)
T 1x5t_A 83 AFKKDS 88 (96)
T ss_dssp SCCCCC
T ss_pred ecccCC
Confidence 987654
No 109
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=9.1e-18 Score=123.73 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=74.0
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCc--eecCeEEEEEecccC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNT--DINGHTVKCFWGKES 280 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~--~~~g~~i~v~~~~~~ 280 (390)
.+++++|||+||+..+++++|+++|++||.|+++.++++||+|||+|.+.++|.+|++.|++. .++|+.|.|.|++.+
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~ 91 (104)
T 1wex_A 12 VSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSK 91 (104)
T ss_dssp CCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCc
Confidence 345678999999999999999999999999999999999999999999999999999988754 589999999999877
Q ss_pred CCC
Q psy2618 281 ENN 283 (390)
Q Consensus 281 ~~~ 283 (390)
...
T Consensus 92 ~~~ 94 (104)
T 1wex_A 92 RIT 94 (104)
T ss_dssp SCC
T ss_pred ccc
Confidence 654
No 110
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=1e-17 Score=126.18 Aligned_cols=89 Identities=27% Similarity=0.502 Sum_probs=82.7
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc------Ccee
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN------GQWL 162 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~------~~~~ 162 (390)
..+....++|||+|||+++++++|+++|+.||.|..|.+++++.+++++|||||+|.+.++|.+|++.++ +..+
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~ 88 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKL 88 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEES
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEE
Confidence 3445667899999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CCeeEEEeecCCCCC
Q psy2618 163 GSRSIRTNWSTRKPP 177 (390)
Q Consensus 163 ~g~~i~v~~~~~~~~ 177 (390)
.|+.|.|.++.++..
T Consensus 89 ~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 89 DGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCEEEEECCCCCCC
T ss_pred cCEEEEEEECCCCcc
Confidence 999999999987644
No 111
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.76 E-value=4.8e-18 Score=126.60 Aligned_cols=85 Identities=27% Similarity=0.477 Sum_probs=77.0
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeecc---ceee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLE---KEMK 77 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g---~~l~ 77 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..+.. ++|||||+|.+.++|++|++.||+..+.+ +.|.
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~ 90 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLV 90 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEE
Confidence 345789999999999999999999999999999999998764 36899999999999999999999999998 9999
Q ss_pred EeecCCCCCC
Q psy2618 78 VNWASSPGNQ 87 (390)
Q Consensus 78 v~~~~~~~~~ 87 (390)
|.++.....+
T Consensus 91 V~~a~~~~~~ 100 (105)
T 2dnh_A 91 VKFADTDKES 100 (105)
T ss_dssp EEESCSSCCC
T ss_pred EEECccCccc
Confidence 9999876543
No 112
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.75 E-value=3.2e-18 Score=130.88 Aligned_cols=83 Identities=19% Similarity=0.267 Sum_probs=75.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHH----HHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLC----ALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~----~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
+..+.++|||+|||+++++++|+ ++|+.||.|.+|.+.++..++|||||+|.+.++|..|++.|||..+.|+.|+|
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V 104 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVI 104 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEE
Confidence 34678999999999999999876 69999999999988776678999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2618 79 NWASSPG 85 (390)
Q Consensus 79 ~~~~~~~ 85 (390)
.++....
T Consensus 105 ~~a~~~~ 111 (127)
T 2a3j_A 105 TFSETPQ 111 (127)
T ss_dssp EECCCCC
T ss_pred EEccCcc
Confidence 9998754
No 113
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.75 E-value=3.9e-18 Score=121.89 Aligned_cols=82 Identities=37% Similarity=0.596 Sum_probs=77.9
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
..+.++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|.+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ 83 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNL 83 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 35678999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cC
Q psy2618 172 ST 173 (390)
Q Consensus 172 ~~ 173 (390)
+.
T Consensus 84 ak 85 (85)
T 3mdf_A 84 AK 85 (85)
T ss_dssp CC
T ss_pred cC
Confidence 73
No 114
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=126.35 Aligned_cols=85 Identities=18% Similarity=0.396 Sum_probs=77.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC----CCCCeEEEEEccHHHHHHHHHHh-cCeeeccceee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP----GNDPYAFLEFVHHTVAATALAAM-NKRVFLEKEMK 77 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~----~~~g~afV~F~~~~~A~~a~~~l-~~~~~~g~~l~ 77 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..+. .++|||||+|.+.++|++|++.| |+..+.|+.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~ 90 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLV 90 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCE
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEE
Confidence 56788999999999999999999999999999999998762 26789999999999999999999 99999999999
Q ss_pred EeecCCCCCC
Q psy2618 78 VNWASSPGNQ 87 (390)
Q Consensus 78 v~~~~~~~~~ 87 (390)
|.++......
T Consensus 91 v~~a~~~~~~ 100 (107)
T 2cph_A 91 LEWADSEVTV 100 (107)
T ss_dssp EEECCCCCCC
T ss_pred EEeCCCCCCC
Confidence 9999875443
No 115
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.75 E-value=2.8e-18 Score=125.45 Aligned_cols=81 Identities=30% Similarity=0.498 Sum_probs=74.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
.+.+.++|||+|||+++++++|+++|+.||+|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 91 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSG 91 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEE
Confidence 456789999999999999999999999999999999998764 467999999999999999999999999999999998
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
++.
T Consensus 92 a~~ 94 (95)
T 2ywk_A 92 PSS 94 (95)
T ss_dssp CCC
T ss_pred cCC
Confidence 864
No 116
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=7.5e-18 Score=126.94 Aligned_cols=86 Identities=26% Similarity=0.399 Sum_probs=78.0
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhc------Ceeecc
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMN------KRVFLE 73 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~------~~~~~g 73 (390)
+..+.++|||+|||+++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|+ +..+.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 456789999999999999999999999999999999987753 67899999999999999999999 999999
Q ss_pred ceeeEeecCCCCCCC
Q psy2618 74 KEMKVNWASSPGNQP 88 (390)
Q Consensus 74 ~~l~v~~~~~~~~~~ 88 (390)
+.|.|.++.+.....
T Consensus 91 ~~l~v~~a~~~~~~~ 105 (111)
T 1x4h_A 91 RQLKVDLAVTRDEAA 105 (111)
T ss_dssp CEEEEECCCCCCCCC
T ss_pred EEEEEEECCCCccCC
Confidence 999999998765543
No 117
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.75 E-value=3.7e-18 Score=123.98 Aligned_cols=84 Identities=23% Similarity=0.274 Sum_probs=76.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC-CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
...+.++|||+|||.++++++|+++|+.||.|.+|++..+.. +++||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a 83 (92)
T 2dgv_A 4 GSSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRID 83 (92)
T ss_dssp SSSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEEC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEc
Confidence 356889999999999999999999999999999999987532 5789999999999999999999999999999999999
Q ss_pred CCCCC
Q psy2618 82 SSPGN 86 (390)
Q Consensus 82 ~~~~~ 86 (390)
.....
T Consensus 84 ~~~~~ 88 (92)
T 2dgv_A 84 RNASG 88 (92)
T ss_dssp SCCSS
T ss_pred CCCCC
Confidence 87543
No 118
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.8e-18 Score=126.95 Aligned_cols=82 Identities=18% Similarity=0.298 Sum_probs=74.9
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcC--ceecCeEEEEEecccC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHN--TDINGHTVKCFWGKES 280 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~~~~ 280 (390)
.+++++|||+|||.++++++|+++|++||.|+++.++++||+|||+|.+.++|.+|++.+++ ..+.|+.|.|.|++.+
T Consensus 28 ~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k 107 (119)
T 2ad9_A 28 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKGKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHK 107 (119)
T ss_dssp SSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGGGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCC
Confidence 34567899999999999999999999999999999999999999999999999999998874 6799999999999877
Q ss_pred CCCC
Q psy2618 281 ENNS 284 (390)
Q Consensus 281 ~~~~ 284 (390)
....
T Consensus 108 ~~~~ 111 (119)
T 2ad9_A 108 ELKT 111 (119)
T ss_dssp SCCC
T ss_pred CCCc
Confidence 6543
No 119
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=8.9e-19 Score=126.50 Aligned_cols=82 Identities=18% Similarity=0.272 Sum_probs=72.8
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCC--CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFG--EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
.+|||+|||+++++++|+++|+.|| .|.++.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~ 81 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSN 81 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECC
Confidence 5799999999999999999999999 99999999999999999999999999999999999999999999999999987
Q ss_pred CCCC
Q psy2618 174 RKPP 177 (390)
Q Consensus 174 ~~~~ 177 (390)
+...
T Consensus 82 ~~~~ 85 (90)
T 3p5t_L 82 KLEH 85 (90)
T ss_dssp ----
T ss_pred CCcc
Confidence 6543
No 120
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.75 E-value=7.3e-18 Score=125.84 Aligned_cols=88 Identities=28% Similarity=0.565 Sum_probs=82.2
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.......++|||+|||..+++++|+++|+.||.|..+.+++++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|+
T Consensus 20 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~ 99 (108)
T 2jrs_A 20 QKGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMK 99 (108)
T ss_dssp CCSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 44556789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy2618 169 TNWSTRKP 176 (390)
Q Consensus 169 v~~~~~~~ 176 (390)
|.++.++.
T Consensus 100 V~~a~~k~ 107 (108)
T 2jrs_A 100 VGHVTERT 107 (108)
T ss_dssp EECSCSSC
T ss_pred EEEcccCC
Confidence 99987653
No 121
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=9.3e-18 Score=127.08 Aligned_cols=84 Identities=20% Similarity=0.288 Sum_probs=76.8
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
.+.++.++|||+|||.++++++|+++|+.||.|.+|++..++. +++||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 89 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVK 89 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEE
Confidence 3567889999999999999999999999999999999998765 36799999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 80 WASSPG 85 (390)
Q Consensus 80 ~~~~~~ 85 (390)
++....
T Consensus 90 ~a~~~~ 95 (114)
T 2do0_A 90 MDERAL 95 (114)
T ss_dssp ECSCCC
T ss_pred EcccCC
Confidence 997543
No 122
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.4e-18 Score=124.98 Aligned_cols=81 Identities=23% Similarity=0.276 Sum_probs=74.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|.+|++.||+..+.|+.|+|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 90 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVS 90 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 456789999999999999999999999999999999998754 46899999999999999999999999999999999
Q ss_pred ecCC
Q psy2618 80 WASS 83 (390)
Q Consensus 80 ~~~~ 83 (390)
++++
T Consensus 91 ~a~~ 94 (95)
T 2cqc_A 91 GPSS 94 (95)
T ss_dssp CCSC
T ss_pred ecCC
Confidence 9864
No 123
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=1.2e-17 Score=125.03 Aligned_cols=89 Identities=22% Similarity=0.484 Sum_probs=82.3
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeC-CCCCCCCcEEEEEecCHHHHHHHHHHh-cCceeCCee
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLKSKGYAFVSFVKKAEAENAITAM-NGQWLGSRS 166 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~-~~~g~~~g~afv~f~~~~~a~~a~~~l-~~~~~~g~~ 166 (390)
.......++|||+|||+++++++|+++|+.||.|..+.++++ +.+++++|||||+|.+.++|.+|++.| ++..+.|+.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~ 88 (107)
T 2cph_A 9 VPKKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRR 88 (107)
T ss_dssp SCCSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCB
T ss_pred cccCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCE
Confidence 344566799999999999999999999999999999999999 788999999999999999999999999 999999999
Q ss_pred EEEeecCCCCC
Q psy2618 167 IRTNWSTRKPP 177 (390)
Q Consensus 167 i~v~~~~~~~~ 177 (390)
|.|.++.....
T Consensus 89 l~v~~a~~~~~ 99 (107)
T 2cph_A 89 LVLEWADSEVT 99 (107)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEeCCCCCC
Confidence 99999987654
No 124
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.75 E-value=6.6e-18 Score=123.84 Aligned_cols=80 Identities=21% Similarity=0.398 Sum_probs=73.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeec--cceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFL--EKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~--g~~l~v~~ 80 (390)
...+.++|||+|||.++++++|+++|+.||.|.+|++.++ ++||||+|.+.++|++|++.||+..+. |+.|+|.+
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~ 89 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG---DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDF 89 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS---SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC---CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEE
Confidence 3567899999999999999999999999999999998764 679999999999999999999999999 99999999
Q ss_pred cCCCC
Q psy2618 81 ASSPG 85 (390)
Q Consensus 81 ~~~~~ 85 (390)
+.++.
T Consensus 90 a~~~~ 94 (97)
T 1why_A 90 AKSGP 94 (97)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 98753
No 125
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.75 E-value=5.6e-18 Score=120.47 Aligned_cols=78 Identities=24% Similarity=0.458 Sum_probs=72.3
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
..+|||+|||.++++++|+++|+.||+|.++++..+.. ++|||||+|.+.++|++|++.|++..+.|+.|+|.++.+
T Consensus 1 t~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~ 80 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAK 80 (83)
T ss_dssp CEEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCc
Confidence 36899999999999999999999999999999987743 468999999999999999999999999999999999976
Q ss_pred C
Q psy2618 84 P 84 (390)
Q Consensus 84 ~ 84 (390)
+
T Consensus 81 ~ 81 (83)
T 3md1_A 81 L 81 (83)
T ss_dssp C
T ss_pred C
Confidence 4
No 126
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.75 E-value=1e-17 Score=123.27 Aligned_cols=84 Identities=27% Similarity=0.405 Sum_probs=79.1
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeE--------EEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCce
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN--------CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW 161 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 161 (390)
......++|||+|||.++++++|+++|+.||.|.. +.++.++.+|+++|||||+|.+.++|.+|++.|++..
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~ 87 (99)
T 2la6_A 8 HSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKE 87 (99)
T ss_dssp CSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCE
Confidence 34566799999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred eCCeeEEEeecC
Q psy2618 162 LGSRSIRTNWST 173 (390)
Q Consensus 162 ~~g~~i~v~~~~ 173 (390)
+.|+.|+|+++.
T Consensus 88 ~~g~~l~V~~A~ 99 (99)
T 2la6_A 88 FSGNPIKVSFAT 99 (99)
T ss_dssp SSSSBCEEEECC
T ss_pred eCCcEEEEEecC
Confidence 999999999873
No 127
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.75 E-value=6.4e-18 Score=130.27 Aligned_cols=88 Identities=32% Similarity=0.465 Sum_probs=82.2
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
..+..+.++|||+|||+++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 40 ~~~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~ 119 (129)
T 2kxn_B 40 RANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIR 119 (129)
T ss_dssp SSCCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 34456678999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy2618 169 TNWSTRKP 176 (390)
Q Consensus 169 v~~~~~~~ 176 (390)
|.++..+.
T Consensus 120 V~~a~~~~ 127 (129)
T 2kxn_B 120 VDFSITKR 127 (129)
T ss_dssp ESCCSSSS
T ss_pred EEEecCCC
Confidence 99997654
No 128
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=1.4e-17 Score=123.55 Aligned_cols=88 Identities=28% Similarity=0.569 Sum_probs=81.1
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.......++|||+|||+++++++|+++|+.||.|..+.++.+ +++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~--~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 9 RITRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMME--GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCCCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEEC--SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred ccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC--CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 445567899999999999999999999999999999999998 788999999999999999999999999999999999
Q ss_pred EeecCCCCCC
Q psy2618 169 TNWSTRKPPA 178 (390)
Q Consensus 169 v~~~~~~~~~ 178 (390)
|.++..+...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999876543
No 129
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=2.1e-17 Score=122.84 Aligned_cols=88 Identities=25% Similarity=0.491 Sum_probs=80.7
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCC-CCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQT-LKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
.......++|||+|||+++++++|+++|+.|| |.++.+++++.+ ++++|||||+|.+.++|.+|+ .|++..+.|+.|
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 86 (104)
T 1wi8_A 9 RLPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRI 86 (104)
T ss_dssp CCCSSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEE
Confidence 33455679999999999999999999999999 999999999887 899999999999999999999 999999999999
Q ss_pred EEeecCCCCCC
Q psy2618 168 RTNWSTRKPPA 178 (390)
Q Consensus 168 ~v~~~~~~~~~ 178 (390)
.|.++..+...
T Consensus 87 ~V~~a~~~~~~ 97 (104)
T 1wi8_A 87 RVDVADQAQDK 97 (104)
T ss_dssp EEEECCCCCCC
T ss_pred EEEEccCCCCC
Confidence 99999876543
No 130
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.75 E-value=2.6e-18 Score=126.54 Aligned_cols=82 Identities=21% Similarity=0.261 Sum_probs=78.1
Q ss_pred CCceEEEEcCCCc------ccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCC-e
Q psy2618 93 SNHYHIFVGDLSP------EIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS-R 165 (390)
Q Consensus 93 ~~~~~l~v~nl~~------~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g-~ 165 (390)
..+++|||+|||. ++++++|+++|++||.|.++.+++++.||+++|||||+|.+.++|.+|++.|++..+.| +
T Consensus 4 ~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r 83 (100)
T 3ns6_A 4 GSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKH 83 (100)
T ss_dssp CGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSC
T ss_pred CcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCe
Confidence 4468999999999 99999999999999999999999999999999999999999999999999999999999 9
Q ss_pred eEEEeecCC
Q psy2618 166 SIRTNWSTR 174 (390)
Q Consensus 166 ~i~v~~~~~ 174 (390)
.|.|.++.+
T Consensus 84 ~l~V~~a~~ 92 (100)
T 3ns6_A 84 RLFLYTMKD 92 (100)
T ss_dssp BCEEEESHH
T ss_pred EEEEEECch
Confidence 999999864
No 131
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.75 E-value=7.2e-18 Score=125.91 Aligned_cols=85 Identities=20% Similarity=0.363 Sum_probs=77.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeee---cccee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVF---LEKEM 76 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~---~g~~l 76 (390)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+ .++.|
T Consensus 9 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l 88 (106)
T 2dgp_A 9 KDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPI 88 (106)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceE
Confidence 467889999999999999999999999999999999988753 679999999999999999999999887 88999
Q ss_pred eEeecCCCCCC
Q psy2618 77 KVNWASSPGNQ 87 (390)
Q Consensus 77 ~v~~~~~~~~~ 87 (390)
.|.++......
T Consensus 89 ~v~~a~~~~~~ 99 (106)
T 2dgp_A 89 QVKPADSESRG 99 (106)
T ss_dssp EEEECCCCSCC
T ss_pred EEEECCccccc
Confidence 99999875543
No 132
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.74 E-value=1.9e-17 Score=123.34 Aligned_cols=87 Identities=30% Similarity=0.521 Sum_probs=80.0
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCC---eeE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS---RSI 167 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g---~~i 167 (390)
.....++|||+|||.++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|.+|++.|++..+.+ +.|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 11 RGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGP-DGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp SCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECS-SSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 34567999999999999999999999999999999999997 78899999999999999999999999999988 999
Q ss_pred EEeecCCCCCC
Q psy2618 168 RTNWSTRKPPA 178 (390)
Q Consensus 168 ~v~~~~~~~~~ 178 (390)
.|.++......
T Consensus 90 ~V~~a~~~~~~ 100 (105)
T 2dnh_A 90 VVKFADTDKES 100 (105)
T ss_dssp EEEESCSSCCC
T ss_pred EEEECccCccc
Confidence 99999876543
No 133
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.74 E-value=4.9e-18 Score=130.91 Aligned_cols=83 Identities=20% Similarity=0.283 Sum_probs=76.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||.++++++|+++|+.||+|.+|++..++ ..+|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~ 121 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVD 121 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEES
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 45688999999999999999999999999999999998774 368899999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 80 WASSPG 85 (390)
Q Consensus 80 ~~~~~~ 85 (390)
++..+.
T Consensus 122 ~a~~~~ 127 (129)
T 2kxn_B 122 FSITKR 127 (129)
T ss_dssp CCSSSS
T ss_pred EecCCC
Confidence 997643
No 134
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=2.4e-17 Score=122.31 Aligned_cols=86 Identities=28% Similarity=0.486 Sum_probs=80.0
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||+++++++|+++|+.|| |.++.+++++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 87 (103)
T 2dng_A 10 LPTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRV 87 (103)
T ss_dssp CCSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEE
Confidence 3455689999999999999999999999997 999999999999999999999999999999999 89999999999999
Q ss_pred eecCCCCC
Q psy2618 170 NWSTRKPP 177 (390)
Q Consensus 170 ~~~~~~~~ 177 (390)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2dng_A 88 DIAEGRKQ 95 (103)
T ss_dssp EECCCCCC
T ss_pred EEecCCCC
Confidence 99987644
No 135
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=6.7e-18 Score=125.10 Aligned_cols=87 Identities=33% Similarity=0.607 Sum_probs=81.6
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
...+.++|||+|||+++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 87 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVD 87 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 45567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 171 WSTRKPP 177 (390)
Q Consensus 171 ~~~~~~~ 177 (390)
++.....
T Consensus 88 ~a~~~~~ 94 (102)
T 1x5s_A 88 QAGKSSD 94 (102)
T ss_dssp EEECCCC
T ss_pred ECCCCCC
Confidence 9976654
No 136
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=7.4e-18 Score=125.84 Aligned_cols=86 Identities=28% Similarity=0.474 Sum_probs=80.6
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||.++++++|+++|+.||.|.++.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 98 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 98 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
++..+.
T Consensus 99 ~a~~~~ 104 (106)
T 1p27_B 99 WCFVRG 104 (106)
T ss_dssp ESEESS
T ss_pred eecCCC
Confidence 987653
No 137
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.1e-17 Score=126.40 Aligned_cols=85 Identities=24% Similarity=0.290 Sum_probs=77.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCce--------EEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVK--------GCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVF 71 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~--------~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~ 71 (390)
++.+.++|||+|||.++++++|+++|+.||.|. .|++..++. ++|||||+|.+.++|++|++.||+..+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 567889999999999999999999999999998 699887743 578999999999999999999999999
Q ss_pred ccceeeEeecCCCCCC
Q psy2618 72 LEKEMKVNWASSPGNQ 87 (390)
Q Consensus 72 ~g~~l~v~~~~~~~~~ 87 (390)
.|+.|+|.++......
T Consensus 91 ~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 91 QGSKLKVSLARKKPPM 106 (113)
T ss_dssp TTEECEEECSSCCCCS
T ss_pred CCCEEEEEECCCCCCC
Confidence 9999999999876543
No 138
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.74 E-value=3e-18 Score=125.75 Aligned_cols=84 Identities=26% Similarity=0.397 Sum_probs=75.2
Q ss_pred CCCCCCCeEEEeCCChhccHHHHH----HHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLC----ALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~----~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
-+.+++++|||+|||.++++++|+ ++|+.||.|.+|++.+...++|||||+|.+.++|.+|++.|++..+.|+.|+
T Consensus 3 ~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (97)
T 1nu4_A 3 PETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMR 82 (97)
T ss_dssp ---CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEE
Confidence 356789999999999999999999 9999999999998875545688999999999999999999999999999999
Q ss_pred EeecCCCC
Q psy2618 78 VNWASSPG 85 (390)
Q Consensus 78 v~~~~~~~ 85 (390)
|.++....
T Consensus 83 v~~a~~~~ 90 (97)
T 1nu4_A 83 IQYAKTDS 90 (97)
T ss_dssp EEECSSCC
T ss_pred EEEccCCC
Confidence 99998743
No 139
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=1.1e-17 Score=127.57 Aligned_cols=84 Identities=30% Similarity=0.501 Sum_probs=78.7
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.+....++|||+|||+++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|++.|++..++|+.|+|
T Consensus 35 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V 114 (118)
T 2khc_A 35 IEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKV 114 (118)
T ss_dssp CCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEE
Confidence 34556799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecC
Q psy2618 170 NWST 173 (390)
Q Consensus 170 ~~~~ 173 (390)
+++.
T Consensus 115 ~~ak 118 (118)
T 2khc_A 115 QLKK 118 (118)
T ss_dssp EEC-
T ss_pred EecC
Confidence 9873
No 140
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=5.5e-18 Score=123.93 Aligned_cols=82 Identities=21% Similarity=0.396 Sum_probs=71.6
Q ss_pred CCCCCCCCeEEEeCCCh-hccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 1 MCDESQPTTLYVGNLDV-SVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 1 ~~~~~~~~~l~v~nLp~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+.+..+.++|||+|||+ ++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 4 ~~~~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 78 (96)
T 2kvi_A 4 MHNIPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILE 78 (96)
T ss_dssp -----CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE-----TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEE
T ss_pred cccCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEE
Confidence 35678899999999998 99999999999999999999884 6799999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++......
T Consensus 79 ~a~~~~~~ 86 (96)
T 2kvi_A 79 VSSSNARP 86 (96)
T ss_dssp EEECCCC-
T ss_pred EcCcCCCC
Confidence 99775443
No 141
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.74 E-value=4.9e-18 Score=126.79 Aligned_cols=83 Identities=25% Similarity=0.498 Sum_probs=76.1
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 22 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 101 (108)
T 2jrs_A 22 GSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVG 101 (108)
T ss_dssp SCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 356789999999999999999999999999999999998753 56899999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 80 WASSPG 85 (390)
Q Consensus 80 ~~~~~~ 85 (390)
++.++.
T Consensus 102 ~a~~k~ 107 (108)
T 2jrs_A 102 HVTERT 107 (108)
T ss_dssp CSCSSC
T ss_pred EcccCC
Confidence 997643
No 142
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.8e-17 Score=123.98 Aligned_cols=79 Identities=18% Similarity=0.167 Sum_probs=73.5
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc-----ceeeEe
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLE-----KEMKVN 79 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g-----~~l~v~ 79 (390)
...++|||+|||+++++++|+++|+.||.|.+|++..+ +||||+|.+.++|++||+.||+..+.| +.|+|.
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~ 88 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 88 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEE
Confidence 46789999999999999999999999999999999876 799999999999999999999999999 999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++.++...
T Consensus 89 ~a~~~~~~ 96 (108)
T 1x4c_A 89 VDGPRSPS 96 (108)
T ss_dssp ESSCCSCC
T ss_pred eCCCCCCC
Confidence 99875543
No 143
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.2e-17 Score=125.32 Aligned_cols=82 Identities=24% Similarity=0.477 Sum_probs=75.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+....++|||+|||.++++++|+++|+.||.|.+|++..+ ++||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 97 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGK 97 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecC
Confidence 3567899999999999999999999999999999999876 6799999999999999999999999999999999998
Q ss_pred CCCCC
Q psy2618 83 SPGNQ 87 (390)
Q Consensus 83 ~~~~~ 87 (390)
.....
T Consensus 98 ~~~~~ 102 (109)
T 1x4g_A 98 ESPDM 102 (109)
T ss_dssp CCCSS
T ss_pred CCCCC
Confidence 75543
No 144
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.74 E-value=1.5e-17 Score=125.86 Aligned_cols=85 Identities=32% Similarity=0.556 Sum_probs=79.7
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+|||.++++++|+++|+.||.|.++.++.+. +|+++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 82 (116)
T 2fy1_A 4 ADHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDR-TSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQ 82 (116)
T ss_dssp TCSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECST-TTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 4567899999999999999999999999999999999997 889999999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy2618 172 STRKPP 177 (390)
Q Consensus 172 ~~~~~~ 177 (390)
+.....
T Consensus 83 a~~~~~ 88 (116)
T 2fy1_A 83 AKKPSF 88 (116)
T ss_dssp CCCSSC
T ss_pred CCCCCC
Confidence 986643
No 145
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5e-18 Score=126.74 Aligned_cols=81 Identities=19% Similarity=0.322 Sum_probs=74.6
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
..+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~ 99 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDW 99 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEe
Confidence 35678899999999999999999999999999999998754 468999999999999999999999999999999999
Q ss_pred cCCC
Q psy2618 81 ASSP 84 (390)
Q Consensus 81 ~~~~ 84 (390)
+.+.
T Consensus 100 a~~~ 103 (106)
T 1p27_B 100 CFVR 103 (106)
T ss_dssp SEES
T ss_pred ecCC
Confidence 9764
No 146
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=1.4e-17 Score=122.56 Aligned_cols=81 Identities=23% Similarity=0.411 Sum_probs=74.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
...+.++|||+|||+++++++|+++|+.||+|.+|++.++ ++||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~---kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~ 87 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD---KGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFAC 87 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT---TTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC---CCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcC
Confidence 3467889999999999999999999999999999998754 6799999999999999999999999999999999998
Q ss_pred CCCC
Q psy2618 83 SPGN 86 (390)
Q Consensus 83 ~~~~ 86 (390)
....
T Consensus 88 ~~~~ 91 (99)
T 2cpj_A 88 HSAS 91 (99)
T ss_dssp CCSC
T ss_pred CCCC
Confidence 7543
No 147
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.74 E-value=1.3e-17 Score=124.69 Aligned_cols=88 Identities=28% Similarity=0.552 Sum_probs=76.5
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.+.....++|||+|||+++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++.+ +..++|+.|.
T Consensus 19 ~~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~ 97 (109)
T 2rs2_A 19 SHMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTID 97 (109)
T ss_dssp -------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEE
T ss_pred cccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEE
Confidence 445567899999999999999999999999999999999999999999999999999999999999875 5999999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.++..+..
T Consensus 98 V~~a~~~~~ 106 (109)
T 2rs2_A 98 PKVAFPRRA 106 (109)
T ss_dssp EEECCCCCC
T ss_pred EEEccCCCC
Confidence 999986643
No 148
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=4.8e-18 Score=125.29 Aligned_cols=80 Identities=11% Similarity=0.172 Sum_probs=73.7
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
++.+.++|||+|||+++++++|+++|+.||+|.+|++..++. ++|||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~ 85 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILF 85 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEE
Confidence 456779999999999999999999999999999999997754 78999999999999999998 899999999999998
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
+..
T Consensus 86 ~~~ 88 (103)
T 1s79_A 86 KDD 88 (103)
T ss_dssp HHH
T ss_pred chH
Confidence 754
No 149
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.74 E-value=6e-18 Score=128.96 Aligned_cols=80 Identities=24% Similarity=0.301 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||+++++++|+++|+.||.|.+|++..++ .++|||||+|.+.++|++|++.||+..+.|+.|+|+
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 115 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQ 115 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 45678999999999999999999999999999999998774 368999999999999999999999999999999999
Q ss_pred ecC
Q psy2618 80 WAS 82 (390)
Q Consensus 80 ~~~ 82 (390)
+++
T Consensus 116 ~ak 118 (118)
T 2khc_A 116 LKK 118 (118)
T ss_dssp EC-
T ss_pred ecC
Confidence 874
No 150
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.74 E-value=4.7e-18 Score=125.11 Aligned_cols=81 Identities=15% Similarity=0.157 Sum_probs=75.1
Q ss_pred CCCCCCeEEEeCCCh------hccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 3 DESQPTTLYVGNLDV------SVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~------~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
++..+++|||+|||. ++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|.+|++.||+..+.|
T Consensus 2 ~~~~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g 81 (100)
T 3ns6_A 2 PLGSDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDL 81 (100)
T ss_dssp CSCGGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSS
T ss_pred CCCcCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCC
Confidence 456689999999999 999999999999999999999988764 67999999999999999999999999999
Q ss_pred -ceeeEeecCC
Q psy2618 74 -KEMKVNWASS 83 (390)
Q Consensus 74 -~~l~v~~~~~ 83 (390)
+.|+|.++.+
T Consensus 82 ~r~l~V~~a~~ 92 (100)
T 3ns6_A 82 KHRLFLYTMKD 92 (100)
T ss_dssp SCBCEEEESHH
T ss_pred CeEEEEEECch
Confidence 9999999864
No 151
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=1.9e-17 Score=125.15 Aligned_cols=88 Identities=25% Similarity=0.399 Sum_probs=81.9
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCee--------EEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCce
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS--------NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW 161 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~--------~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~ 161 (390)
.+....++|||+|||.++++++|+++|+.||.|. .+.++.++.+++++|||||+|.+.++|.+|++.|++..
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~ 89 (113)
T 2cpe_A 10 DEDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKD 89 (113)
T ss_dssp CCCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCE
T ss_pred ccCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCc
Confidence 3456789999999999999999999999999998 69999998999999999999999999999999999999
Q ss_pred eCCeeEEEeecCCCCC
Q psy2618 162 LGSRSIRTNWSTRKPP 177 (390)
Q Consensus 162 ~~g~~i~v~~~~~~~~ 177 (390)
+.|+.|.|.++..+..
T Consensus 90 ~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 90 FQGSKLKVSLARKKPP 105 (113)
T ss_dssp ETTEECEEECSSCCCC
T ss_pred cCCCEEEEEECCCCCC
Confidence 9999999999987654
No 152
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=9e-18 Score=126.22 Aligned_cols=83 Identities=13% Similarity=0.237 Sum_probs=75.7
Q ss_pred CCCCCCeEEEeCCChhccHHHHH---HHhcccCCceEEEEeecCC------CCCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLC---ALFSQIGPVKGCKVIREPG------NDPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~---~~f~~~G~v~~v~~~~~~~------~~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
+...+++|||+|||+++++++|+ ++|+.||+|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 34568899999999999999999 9999999999999987753 45899999999999999999999999999
Q ss_pred ceeeEeecCCCC
Q psy2618 74 KEMKVNWASSPG 85 (390)
Q Consensus 74 ~~l~v~~~~~~~ 85 (390)
+.|+|.++.++.
T Consensus 91 r~l~V~~a~~k~ 102 (111)
T 2cpi_A 91 RTLKASLGTTKY 102 (111)
T ss_dssp EEEEEESCCCCS
T ss_pred EEEEEEeccccc
Confidence 999999998754
No 153
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.74 E-value=1.2e-17 Score=124.73 Aligned_cols=88 Identities=23% Similarity=0.406 Sum_probs=81.7
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee---CCee
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL---GSRS 166 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~---~g~~ 166 (390)
......++|||+|||.++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+ .++.
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~ 87 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRP 87 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCce
Confidence 3456679999999999999999999999999999999999999999999999999999999999999999987 8999
Q ss_pred EEEeecCCCCC
Q psy2618 167 IRTNWSTRKPP 177 (390)
Q Consensus 167 i~v~~~~~~~~ 177 (390)
|.|.++.....
T Consensus 88 l~v~~a~~~~~ 98 (106)
T 2dgp_A 88 IQVKPADSESR 98 (106)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEECCcccc
Confidence 99999986643
No 154
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=6.4e-18 Score=124.47 Aligned_cols=83 Identities=24% Similarity=0.471 Sum_probs=76.0
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCce-EEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccce---
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVK-GCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKE--- 75 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~-~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~--- 75 (390)
...+.++|||+|||+++++++|+++|+.||.|. +|++..++. ++|||||+|.+.++|++|++.||+..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 356789999999999999999999999999999 999998763 5689999999999999999999999999999
Q ss_pred -eeEeecCCCC
Q psy2618 76 -MKVNWASSPG 85 (390)
Q Consensus 76 -l~v~~~~~~~ 85 (390)
|+|.++....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999997643
No 155
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.74 E-value=8.7e-18 Score=124.23 Aligned_cols=77 Identities=25% Similarity=0.423 Sum_probs=71.7
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
....++|||+|||.++++++|+++|+.||.|.+|++. .++|||||+|.+.++|++|++.||+..+.|+.|+|.++++
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccC
Confidence 3457899999999999999999999999999999987 3578999999999999999999999999999999999875
No 156
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.74 E-value=2.3e-17 Score=119.62 Aligned_cols=80 Identities=29% Similarity=0.468 Sum_probs=73.7
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+..+.++|||+|||+++++++|+++|+.||.|.+|++.+ +||||+|.+.++|++|++.||+..+.|+.|+|.++.
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 80 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK-----DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLST 80 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS-----SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEcc
Confidence 467889999999999999999999999999999999863 399999999999999999999999999999999998
Q ss_pred CCCCC
Q psy2618 83 SPGNQ 87 (390)
Q Consensus 83 ~~~~~ 87 (390)
.....
T Consensus 81 ~~~~~ 85 (92)
T 2dgt_A 81 SRLRT 85 (92)
T ss_dssp CCCSC
T ss_pred CCCCC
Confidence 75443
No 157
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.74 E-value=1.4e-17 Score=125.21 Aligned_cols=86 Identities=29% Similarity=0.477 Sum_probs=80.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||..+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 101 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVD 101 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
++..+.
T Consensus 102 ~a~~~~ 107 (110)
T 1oo0_B 102 WCFVKG 107 (110)
T ss_dssp ESEESS
T ss_pred EcccCC
Confidence 987654
No 158
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.74 E-value=2.3e-17 Score=122.34 Aligned_cols=80 Identities=30% Similarity=0.484 Sum_probs=73.2
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
...+.++|||+|||+++++++|+++|+.||.|.+|++. ++||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 7 ~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 81 (103)
T 2dgu_A 7 GMAKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAK 81 (103)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcC
Confidence 34578999999999999999999999999999999886 4599999999999999999999999999999999998
Q ss_pred CCCCC
Q psy2618 83 SPGNQ 87 (390)
Q Consensus 83 ~~~~~ 87 (390)
.....
T Consensus 82 ~~~~~ 86 (103)
T 2dgu_A 82 PPDQK 86 (103)
T ss_dssp CCCCC
T ss_pred CCccc
Confidence 76543
No 159
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.74 E-value=5.8e-18 Score=125.18 Aligned_cols=77 Identities=29% Similarity=0.574 Sum_probs=72.4
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
++|||+|||.++++++|+++|+.||.|.++.++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|.|.++...
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~-----~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~ 75 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARN-----PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGM 75 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESS-----SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC-----CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCC
Confidence 47999999999999999999999999999999886 7899999999999999999999999999999999999876
Q ss_pred CC
Q psy2618 176 PP 177 (390)
Q Consensus 176 ~~ 177 (390)
..
T Consensus 76 ~~ 77 (101)
T 2hvz_A 76 PR 77 (101)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 160
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=8.6e-18 Score=124.56 Aligned_cols=81 Identities=17% Similarity=0.260 Sum_probs=73.6
Q ss_pred CCCcceeEEcCCCCC-CcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcC--ceecCeEEEEEeccc
Q psy2618 203 SPTNCTVYCGGFGKD-LNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHN--TDINGHTVKCFWGKE 279 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~--~~~~g~~i~v~~~~~ 279 (390)
..++++|||+|||.+ +++++|+++|++||.|.++.+++.||+|||+|.+.++|.+|++.|++ ..++|+.|.|.+++.
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~ 101 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEK 101 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECS
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcc
Confidence 445778999999998 99999999999999999999999999999999999999999998864 569999999999987
Q ss_pred CCCC
Q psy2618 280 SENN 283 (390)
Q Consensus 280 ~~~~ 283 (390)
....
T Consensus 102 ~~~~ 105 (112)
T 1x4f_A 102 YKKL 105 (112)
T ss_dssp CSSS
T ss_pred cccc
Confidence 6544
No 161
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.74 E-value=1.7e-18 Score=124.98 Aligned_cols=79 Identities=18% Similarity=0.229 Sum_probs=67.8
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccC--CceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIG--PVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G--~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+.+|||+|||+++++++|+++|+.|| .|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|+.|+|.++
T Consensus 1 r~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~ 80 (90)
T 3p5t_L 1 RIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPS 80 (90)
T ss_dssp ---CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC
T ss_pred CeEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEEC
Confidence 36899999999999999999999999 999999998753 5689999999999999999999999999999999999
Q ss_pred CCCC
Q psy2618 82 SSPG 85 (390)
Q Consensus 82 ~~~~ 85 (390)
.+..
T Consensus 81 ~~~~ 84 (90)
T 3p5t_L 81 NKLE 84 (90)
T ss_dssp ----
T ss_pred CCCc
Confidence 8643
No 162
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=9e-18 Score=124.90 Aligned_cols=85 Identities=21% Similarity=0.386 Sum_probs=77.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcc-cCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCee-eccceeeE
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQ-IGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRV-FLEKEMKV 78 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~-~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~-~~g~~l~v 78 (390)
+..+.++|||+|||+++++++|+++|+. ||.|.+|++..+.. ++|||||+|.+.++|++|++.|++.. +.|+.|.|
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v 84 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRL 84 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEE
Confidence 4577899999999999999999999999 99999999998754 46899999999999999999999999 99999999
Q ss_pred eecCCCCCC
Q psy2618 79 NWASSPGNQ 87 (390)
Q Consensus 79 ~~~~~~~~~ 87 (390)
.++......
T Consensus 85 ~~a~~~~~~ 93 (104)
T 2dhg_A 85 SVAIPKASR 93 (104)
T ss_dssp CBCCCCCSC
T ss_pred EEccCCCcC
Confidence 999775543
No 163
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.73 E-value=1.3e-17 Score=124.81 Aligned_cols=84 Identities=25% Similarity=0.392 Sum_probs=71.6
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.+..+.++|||+|||.++++++|+++|+.||.|.+|++..++ .++|||||+|.+.++|++|++.+ +..+.|+.|.|
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V 98 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDP 98 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEE
Confidence 356788999999999999999999999999999999998874 36899999999999999999975 58999999999
Q ss_pred eecCCCCC
Q psy2618 79 NWASSPGN 86 (390)
Q Consensus 79 ~~~~~~~~ 86 (390)
.++.....
T Consensus 99 ~~a~~~~~ 106 (109)
T 2rs2_A 99 KVAFPRRA 106 (109)
T ss_dssp EECCCCCC
T ss_pred EEccCCCC
Confidence 99987544
No 164
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=8.3e-18 Score=123.62 Aligned_cols=85 Identities=26% Similarity=0.482 Sum_probs=78.7
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCC---CCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQ---TLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.+.++|||+|||+++++++|+++|+.||.|..+.++.++. +++++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 3 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 82 (98)
T 2cpf_A 3 SGSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEV 82 (98)
T ss_dssp CCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 4568999999999999999999999999999999998876 6689999999999999999999999999999999999
Q ss_pred eecCCCCC
Q psy2618 170 NWSTRKPP 177 (390)
Q Consensus 170 ~~~~~~~~ 177 (390)
.++.....
T Consensus 83 ~~a~~~~~ 90 (98)
T 2cpf_A 83 RISERATK 90 (98)
T ss_dssp ECSSCSSC
T ss_pred EEccCCCC
Confidence 99976643
No 165
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=4.3e-17 Score=123.72 Aligned_cols=87 Identities=31% Similarity=0.474 Sum_probs=80.6
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.......++|||+|||+++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.+++ .+.|+.|.
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~ 89 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKAN 89 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECE
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEE
Confidence 34556789999999999999999999999999999999999999999999999999999999999999998 89999999
Q ss_pred EeecCCCC
Q psy2618 169 TNWSTRKP 176 (390)
Q Consensus 169 v~~~~~~~ 176 (390)
|.++....
T Consensus 90 V~~a~~~~ 97 (116)
T 2cqd_A 90 VNLAYLGA 97 (116)
T ss_dssp EEESTTTC
T ss_pred EEEcccCC
Confidence 99997653
No 166
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.73 E-value=1.7e-17 Score=119.04 Aligned_cols=82 Identities=30% Similarity=0.564 Sum_probs=75.8
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||+++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.++|.+|++. ++..++|+.|.|
T Consensus 6 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~-~~~~~~g~~i~v 84 (87)
T 3s7r_A 6 KNEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLDQ-KEHRLDGRVIDP 84 (87)
T ss_dssp -CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHHS-SCEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHHh-CCCEECCEEEEE
Confidence 3456778999999999999999999999999999999999999999999999999999999999954 888999999999
Q ss_pred eec
Q psy2618 170 NWS 172 (390)
Q Consensus 170 ~~~ 172 (390)
+++
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 875
No 167
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=7.1e-18 Score=125.65 Aligned_cols=85 Identities=26% Similarity=0.438 Sum_probs=77.4
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.+..+.++|||+|||+++++++|+++|+.||+|.+|++..++. ++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 4567899999999999999999999999999999999998753 568999999999999999998 999999999999
Q ss_pred eecCCCCCC
Q psy2618 79 NWASSPGNQ 87 (390)
Q Consensus 79 ~~~~~~~~~ 87 (390)
.++.+....
T Consensus 90 ~~a~~~~~~ 98 (105)
T 2dh8_A 90 KPCTPRGMQ 98 (105)
T ss_dssp CCSCCSSCC
T ss_pred EEccCCCCC
Confidence 999876544
No 168
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=130.85 Aligned_cols=85 Identities=27% Similarity=0.425 Sum_probs=78.0
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||.++++++|+++|+.||+|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|+.|+|.
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 117 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVA 117 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 456779999999999999999999999999999999998864 47899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++.....+
T Consensus 118 ~a~~~~~~ 125 (139)
T 1u6f_A 118 LAASGHQR 125 (139)
T ss_dssp ESSCCCCC
T ss_pred ECCCCCCC
Confidence 99876544
No 169
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=9.9e-18 Score=123.45 Aligned_cols=86 Identities=29% Similarity=0.512 Sum_probs=80.4
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCee-EEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCee---
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS-NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS--- 166 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~-~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~--- 166 (390)
.....++|||+|||+++++++|+++|+.||.|. ++.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~ 84 (99)
T 2div_A 5 SSGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAK 84 (99)
T ss_dssp CCSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCE
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcce
Confidence 345679999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred -EEEeecCCCC
Q psy2618 167 -IRTNWSTRKP 176 (390)
Q Consensus 167 -i~v~~~~~~~ 176 (390)
|+|.|+....
T Consensus 85 ~l~v~~a~~~~ 95 (99)
T 2div_A 85 RFKLNYATYSG 95 (99)
T ss_dssp ECCEEETTCCS
T ss_pred eEEEeecCCCC
Confidence 9999987653
No 170
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.6e-17 Score=126.17 Aligned_cols=82 Identities=22% Similarity=0.332 Sum_probs=75.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
++.+.++|||+|||+++++++|+++|+.||.|.+|++..++. +++||||+|.+.++|++|++.+++ .+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~ 91 (116)
T 2cqd_A 13 KDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVN 91 (116)
T ss_dssp CSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEE
Confidence 567889999999999999999999999999999999988753 678999999999999999999998 8999999999
Q ss_pred ecCCCC
Q psy2618 80 WASSPG 85 (390)
Q Consensus 80 ~~~~~~ 85 (390)
++....
T Consensus 92 ~a~~~~ 97 (116)
T 2cqd_A 92 LAYLGA 97 (116)
T ss_dssp ESTTTC
T ss_pred EcccCC
Confidence 997643
No 171
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=2.1e-17 Score=119.36 Aligned_cols=79 Identities=25% Similarity=0.456 Sum_probs=73.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+..+.++|||+|||+++++++|+++|+.||.|.+|++.+ +||||+|.+.++|++|++.|++..+.|+.|+|.++.
T Consensus 5 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~-----~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 79 (90)
T 2dnp_A 5 SSGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK-----DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELST 79 (90)
T ss_dssp SSCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS-----SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC-----CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECC
Confidence 567889999999999999999999999999999999873 399999999999999999999999999999999998
Q ss_pred CCCC
Q psy2618 83 SPGN 86 (390)
Q Consensus 83 ~~~~ 86 (390)
....
T Consensus 80 ~~~~ 83 (90)
T 2dnp_A 80 KGQK 83 (90)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 7544
No 172
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.5e-17 Score=122.30 Aligned_cols=85 Identities=18% Similarity=0.242 Sum_probs=79.5
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+++++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.|++..+.|+.|+|+
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 90 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLV 90 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999899998999999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy2618 171 WSTRK 175 (390)
Q Consensus 171 ~~~~~ 175 (390)
++...
T Consensus 91 ~a~~~ 95 (98)
T 2cqp_A 91 LGSGP 95 (98)
T ss_dssp ESSCS
T ss_pred EcCCC
Confidence 98754
No 173
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.73 E-value=1.5e-17 Score=124.13 Aligned_cols=79 Identities=28% Similarity=0.528 Sum_probs=72.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++. +|||||+|.+.++|++|++.|++..+.|+.|.|.++.
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~ 101 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSK 101 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEec
Confidence 45688999999999999999999999999999999987 6799999999999999999999999999999999998
Q ss_pred CCCC
Q psy2618 83 SPGN 86 (390)
Q Consensus 83 ~~~~ 86 (390)
....
T Consensus 102 ~~~~ 105 (108)
T 2jvo_A 102 LPAK 105 (108)
T ss_dssp CCC-
T ss_pred CCCC
Confidence 7543
No 174
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.73 E-value=2.1e-17 Score=120.79 Aligned_cols=77 Identities=21% Similarity=0.399 Sum_probs=71.4
Q ss_pred CCCCCCeEEEeCCCh-hccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDV-SVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~-~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
..++.++|||+|||. ++++++|+++|+.||.|.+|++. +|||||+|.+.++|.+|++.|++..+.|+.|+|.++
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~-----~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 92 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK-----NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVS 92 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEEC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe-----CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEec
Confidence 457899999999998 99999999999999999999883 679999999999999999999999999999999998
Q ss_pred CCC
Q psy2618 82 SSP 84 (390)
Q Consensus 82 ~~~ 84 (390)
...
T Consensus 93 ~~~ 95 (97)
T 2xnq_A 93 SSN 95 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 175
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.7e-17 Score=123.34 Aligned_cols=82 Identities=27% Similarity=0.472 Sum_probs=74.8
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC----CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG----NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~----~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
..+.++|||+|||+++++++|+++|+.|| |.+|++..++. ++|||||+|.+.++|++|+ .|++..+.|+.|.|.
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 89 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVD 89 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEE
Confidence 45789999999999999999999999999 99999988753 5789999999999999999 899999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++......
T Consensus 90 ~a~~~~~~ 97 (104)
T 1wi8_A 90 VADQAQDK 97 (104)
T ss_dssp ECCCCCCC
T ss_pred EccCCCCC
Confidence 99875543
No 176
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.73 E-value=7e-18 Score=125.59 Aligned_cols=79 Identities=19% Similarity=0.149 Sum_probs=71.7
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccC-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIG-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
...++|||+|||+++++++|+++|+.|| .|..+++..+ .++|||||+|.+.++|++|++.||+..+.|+.|+|.++..
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~-~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~ 104 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR-DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDN 104 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC-SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC-CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 4567999999999999999999999999 8999987543 4789999999999999999999999999999999999875
Q ss_pred C
Q psy2618 84 P 84 (390)
Q Consensus 84 ~ 84 (390)
.
T Consensus 105 ~ 105 (111)
T 2jvr_A 105 P 105 (111)
T ss_dssp -
T ss_pred C
Confidence 3
No 177
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.73 E-value=1.1e-17 Score=125.76 Aligned_cols=82 Identities=21% Similarity=0.373 Sum_probs=75.1
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
..+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 23 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 102 (110)
T 1oo0_B 23 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDW 102 (110)
T ss_dssp BTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEE
Confidence 45678999999999999999999999999999999987753 578999999999999999999999999999999999
Q ss_pred cCCCC
Q psy2618 81 ASSPG 85 (390)
Q Consensus 81 ~~~~~ 85 (390)
+.+..
T Consensus 103 a~~~~ 107 (110)
T 1oo0_B 103 CFVKG 107 (110)
T ss_dssp SEESS
T ss_pred cccCC
Confidence 97643
No 178
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.73 E-value=2e-17 Score=129.91 Aligned_cols=89 Identities=22% Similarity=0.436 Sum_probs=82.8
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.+....++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 116 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKV 116 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEE
Confidence 34566789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCCCCCC
Q psy2618 170 NWSTRKPPA 178 (390)
Q Consensus 170 ~~~~~~~~~ 178 (390)
.++..+...
T Consensus 117 ~~a~~~~~~ 125 (139)
T 1u6f_A 117 ALAASGHQR 125 (139)
T ss_dssp EESSCCCCC
T ss_pred EECCCCCCC
Confidence 999876543
No 179
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.73 E-value=1.4e-17 Score=124.55 Aligned_cols=79 Identities=22% Similarity=0.250 Sum_probs=73.6
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
..+.++|||+|||+++++++|+++|+.||.|.+|++..+.. ++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a 105 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLV 105 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEe
Confidence 45789999999999999999999999999999999998764 4579999999999999999999999999999999988
Q ss_pred C
Q psy2618 82 S 82 (390)
Q Consensus 82 ~ 82 (390)
.
T Consensus 106 ~ 106 (107)
T 3ulh_A 106 T 106 (107)
T ss_dssp C
T ss_pred C
Confidence 5
No 180
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=7.6e-17 Score=119.59 Aligned_cols=87 Identities=25% Similarity=0.454 Sum_probs=79.3
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.......++|||+|||+++++++|+++|+.||.|..+.++.+... ++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 86 (103)
T 2cq3_A 9 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERG--SKGFGFVTFENSADADRAREKLHGTVVEGRKIE 86 (103)
T ss_dssp SCCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTT--TCCEEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCC--CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 445567899999999999999999999999999999999988543 899999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cq3_A 87 VNNATARVM 95 (103)
T ss_dssp EEECCSSCC
T ss_pred EEEcccCCC
Confidence 999987644
No 181
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=2.6e-17 Score=123.36 Aligned_cols=84 Identities=61% Similarity=1.157 Sum_probs=77.7
Q ss_pred cCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 200 ~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
.......++|||+||+..+++++|+++|+.||.|.++.+++++|+|||+|.+.++|.+|++.|++..++|+.|+|.|+++
T Consensus 19 ~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~ 98 (109)
T 1x4g_A 19 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKE 98 (109)
T ss_dssp HHSCSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred cCCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCC
Confidence 34455678999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCCC
Q psy2618 280 SENN 283 (390)
Q Consensus 280 ~~~~ 283 (390)
....
T Consensus 99 ~~~~ 102 (109)
T 1x4g_A 99 SPDM 102 (109)
T ss_dssp CCSS
T ss_pred CCCC
Confidence 7543
No 182
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=3.1e-17 Score=120.72 Aligned_cols=81 Identities=21% Similarity=0.443 Sum_probs=75.8
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
....++|||+|||..+++++|+++|++||.|+++.+.+++|+|||+|.+.++|.+|++.|++..++|+.|+|.+++++..
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~~ 91 (99)
T 2cpj_A 12 FTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHSAS 91 (99)
T ss_dssp CCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCCSC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCCCC
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999988654
Q ss_pred C
Q psy2618 283 N 283 (390)
Q Consensus 283 ~ 283 (390)
.
T Consensus 92 ~ 92 (99)
T 2cpj_A 92 L 92 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 183
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.73 E-value=1.7e-17 Score=119.68 Aligned_cols=80 Identities=20% Similarity=0.388 Sum_probs=76.8
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 174 (390)
.++|||+|||.++++++|+++|+.||.|.++.++.++.+++++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++..
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~ 84 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRT 84 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccC
Confidence 578999999999999999999999999999999999989999999999999999999999 9999999999999999876
Q ss_pred C
Q psy2618 175 K 175 (390)
Q Consensus 175 ~ 175 (390)
.
T Consensus 85 ~ 85 (89)
T 3ucg_A 85 N 85 (89)
T ss_dssp T
T ss_pred C
Confidence 4
No 184
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=6.6e-18 Score=120.64 Aligned_cols=81 Identities=26% Similarity=0.450 Sum_probs=76.6
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
.+.++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|++.++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~ 82 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGP 82 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCC
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999988875
Q ss_pred C
Q psy2618 173 T 173 (390)
Q Consensus 173 ~ 173 (390)
.
T Consensus 83 ~ 83 (85)
T 1x4e_A 83 S 83 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 185
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=5e-18 Score=121.25 Aligned_cols=79 Identities=23% Similarity=0.302 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
.++.++|||+|||+++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|+.+++.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~ 81 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSG 81 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecC
Confidence 35789999999999999999999999999999999987743 678999999999999999999999999999999887
Q ss_pred cC
Q psy2618 81 AS 82 (390)
Q Consensus 81 ~~ 82 (390)
+.
T Consensus 82 ~~ 83 (85)
T 1x4e_A 82 PS 83 (85)
T ss_dssp CC
T ss_pred CC
Confidence 64
No 186
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.72 E-value=1.7e-17 Score=130.76 Aligned_cols=82 Identities=20% Similarity=0.268 Sum_probs=72.7
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc--ceeeEeecC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLE--KEMKVNWAS 82 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 82 (390)
....+|||+||++++++++|+++|++||.|.+|++... +.++||||+|.+.++|++|++.|||..|.| ++|+|+|++
T Consensus 44 s~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k-~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 44 SPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK-NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp CCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES-SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred CceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 34466889999999999999999999999999998754 357899999999999999999999999976 999999998
Q ss_pred CCCCC
Q psy2618 83 SPGNQ 87 (390)
Q Consensus 83 ~~~~~ 87 (390)
.....
T Consensus 123 ~~~l~ 127 (164)
T 1sjr_A 123 LTSLN 127 (164)
T ss_dssp SSSCC
T ss_pred CCccc
Confidence 76543
No 187
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.72 E-value=1.6e-17 Score=122.21 Aligned_cols=80 Identities=25% Similarity=0.328 Sum_probs=73.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceE--------EEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKG--------CKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVF 71 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~--------v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~ 71 (390)
...+.++|||+|||.++++++|+++|+.||.|.+ |++..++. ++|||||+|.+.++|.+|++.||+..+
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~ 88 (99)
T 2la6_A 9 SHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 88 (99)
T ss_dssp SCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTCBS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCCEe
Confidence 3467899999999999999999999999999999 99988753 568999999999999999999999999
Q ss_pred ccceeeEeecC
Q psy2618 72 LEKEMKVNWAS 82 (390)
Q Consensus 72 ~g~~l~v~~~~ 82 (390)
.|+.|+|++++
T Consensus 89 ~g~~l~V~~A~ 99 (99)
T 2la6_A 89 SGNPIKVSFAT 99 (99)
T ss_dssp SSSBCEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 188
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=9.7e-18 Score=124.28 Aligned_cols=81 Identities=19% Similarity=0.207 Sum_probs=72.1
Q ss_pred CCCCCCeEEEeCCChh-ccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcC--eeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVS-VTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNK--RVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~-~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~--~~~~g~~l~v~ 79 (390)
+..++++|||+|||++ +++++|+++|+.||.|.+|++.+ ++|||||+|.+.++|++|++.|++ ..+.|++|+|.
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~ 97 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMR---MKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVD 97 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEET---TTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEE
T ss_pred cCCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEec---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEE
Confidence 3567899999999998 99999999999999999999974 478999999999999999998864 56899999999
Q ss_pred ecCCCCC
Q psy2618 80 WASSPGN 86 (390)
Q Consensus 80 ~~~~~~~ 86 (390)
++.....
T Consensus 98 ~a~~~~~ 104 (112)
T 1x4f_A 98 LSEKYKK 104 (112)
T ss_dssp EECSCSS
T ss_pred ECccccc
Confidence 9976443
No 189
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=122.99 Aligned_cols=87 Identities=25% Similarity=0.443 Sum_probs=81.2
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.+....++|||+|||+++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++. ++..+.|+.|.|
T Consensus 11 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V 89 (105)
T 2dh8_A 11 SGADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDP 89 (105)
T ss_dssp CCSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEE
Confidence 3456789999999999999999999999999999999999999999999999999999999999988 999999999999
Q ss_pred eecCCCCC
Q psy2618 170 NWSTRKPP 177 (390)
Q Consensus 170 ~~~~~~~~ 177 (390)
.++.++..
T Consensus 90 ~~a~~~~~ 97 (105)
T 2dh8_A 90 KPCTPRGM 97 (105)
T ss_dssp CCSCCSSC
T ss_pred EEccCCCC
Confidence 99986654
No 190
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=1.2e-17 Score=123.14 Aligned_cols=82 Identities=16% Similarity=0.244 Sum_probs=75.9
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+++|+++|+++|+.||.|.+|.+++++. |+++|||||+|.+.++|..|++ +++..+.|+.|.|.
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~-g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~ 84 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLH-KAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLIL 84 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCT-TSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEE
T ss_pred ccCCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCC-CCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEE
Confidence 344578999999999999999999999999999999999977 8999999999999999999998 89999999999999
Q ss_pred ecCC
Q psy2618 171 WSTR 174 (390)
Q Consensus 171 ~~~~ 174 (390)
++..
T Consensus 85 ~~~~ 88 (103)
T 1s79_A 85 FKDD 88 (103)
T ss_dssp EHHH
T ss_pred EchH
Confidence 8653
No 191
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.72 E-value=2.3e-17 Score=120.47 Aligned_cols=83 Identities=27% Similarity=0.438 Sum_probs=77.6
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+.+++++|+++|+.||.|.++.+++++. ++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~-g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDRE-GKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTT-SCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCC-CCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEE
Confidence 455679999999999999999999999999999999999975 8899999999999999999999999999999999999
Q ss_pred ecCC
Q psy2618 171 WSTR 174 (390)
Q Consensus 171 ~~~~ 174 (390)
++..
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 8853
No 192
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1.8e-17 Score=123.21 Aligned_cols=86 Identities=34% Similarity=0.586 Sum_probs=80.1
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCC-CCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCce-eCCeeEE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW-LGSRSIR 168 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~-~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~-~~g~~i~ 168 (390)
+....++|||+|||+++++++|+++|+. ||.|.++.++.++ +++++|||||+|.+.++|.+|++.|++.. +.|+.|.
T Consensus 5 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~ 83 (104)
T 2dhg_A 5 SSGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQ-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVR 83 (104)
T ss_dssp CSSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECT-TCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCC
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEE
Confidence 4456789999999999999999999999 9999999999998 88999999999999999999999999999 9999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.++..+..
T Consensus 84 v~~a~~~~~ 92 (104)
T 2dhg_A 84 LSVAIPKAS 92 (104)
T ss_dssp CCBCCCCCS
T ss_pred EEEccCCCc
Confidence 999976644
No 193
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=119.84 Aligned_cols=80 Identities=16% Similarity=0.409 Sum_probs=74.9
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceec--CeEEEEEecccC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDIN--GHTVKCFWGKES 280 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~ 280 (390)
..+.++|||+|||..+++++|+++|++||.|+++.+.+++++|||+|.+.++|.+|++.||+..++ |+.|.|.+++++
T Consensus 14 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~ 93 (97)
T 1why_A 14 ANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93 (97)
T ss_dssp CCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSSSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCCCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCC
Confidence 345678999999999999999999999999999999999999999999999999999999999999 999999999876
Q ss_pred CC
Q psy2618 281 EN 282 (390)
Q Consensus 281 ~~ 282 (390)
..
T Consensus 94 ~~ 95 (97)
T 1why_A 94 PS 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 194
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=121.19 Aligned_cols=80 Identities=20% Similarity=0.297 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
....++|||+|||+++++++|+++|+.||.|. +.++.+ .++|||||+|.+.++|++|++.||+..+.|+.|.|.++..
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~-~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 93 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ-GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQ 93 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE-TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCC
T ss_pred CCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC-CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCC
Confidence 34589999999999999999999999999996 666665 4689999999999999999999999999999999999976
Q ss_pred CC
Q psy2618 84 PG 85 (390)
Q Consensus 84 ~~ 85 (390)
+.
T Consensus 94 ~~ 95 (97)
T 2e5j_A 94 QR 95 (97)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 195
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.72 E-value=2e-17 Score=118.99 Aligned_cols=83 Identities=24% Similarity=0.408 Sum_probs=77.1
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCC-CCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLK-SKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~-~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
..++|||+|||.++++++|+++|+.||.|.++.++.+..++. ++|||||+|.+.++|.+|++.|++..+.|+.|.|+++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 82 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAV 82 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEEC
Confidence 458899999999999999999999999999999999887665 8999999999999999999999999999999999998
Q ss_pred CCCC
Q psy2618 173 TRKP 176 (390)
Q Consensus 173 ~~~~ 176 (390)
.+..
T Consensus 83 ~~~~ 86 (88)
T 4a8x_A 83 LAPW 86 (88)
T ss_dssp CCCC
T ss_pred CCCC
Confidence 6543
No 196
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=1e-16 Score=121.29 Aligned_cols=81 Identities=16% Similarity=0.249 Sum_probs=74.0
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-----CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEec
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG 277 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-----~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 277 (390)
....++|||+||+..+++++|+++|+.||.|+++.++++ +|+|||+|.+.++|.+|++.|++..++|+.|.|.++
T Consensus 12 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 91 (114)
T 2do0_A 12 GRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMD 91 (114)
T ss_dssp CCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEc
Confidence 345678999999999999999999999999999999976 689999999999999999999999999999999998
Q ss_pred ccCCCC
Q psy2618 278 KESENN 283 (390)
Q Consensus 278 ~~~~~~ 283 (390)
+.....
T Consensus 92 ~~~~~~ 97 (114)
T 2do0_A 92 ERALPK 97 (114)
T ss_dssp SCCCCC
T ss_pred ccCCCC
Confidence 765443
No 197
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.72 E-value=3.6e-17 Score=122.26 Aligned_cols=83 Identities=27% Similarity=0.360 Sum_probs=78.4
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||+.+++++|+++|+.||.|.++.++.++ +|+++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 102 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDR-SGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNI 102 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECT-TSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEE
Confidence 345668999999999999999999999999999999999998 8899999999999999999999999999999999999
Q ss_pred eecC
Q psy2618 170 NWST 173 (390)
Q Consensus 170 ~~~~ 173 (390)
.++.
T Consensus 103 ~~a~ 106 (107)
T 3ulh_A 103 QLVT 106 (107)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9875
No 198
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=4.1e-17 Score=119.20 Aligned_cols=79 Identities=14% Similarity=0.218 Sum_probs=73.6
Q ss_pred CCcceeEEcCCCCCCcHHHHH----hhhcCCCceeEEEEecC---CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEe
Q psy2618 204 PTNCTVYCGGFGKDLNEELVS----KVFSPFGTIVDIRVFKE---KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFW 276 (390)
Q Consensus 204 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 276 (390)
...++|||+|||..+++++|+ ++|++||.|+++.++++ +++|||+|.+.++|.+|++.||+..++|+.|+|.+
T Consensus 7 ~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~ 86 (96)
T 2dgx_A 7 GNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSL 86 (96)
T ss_dssp SSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 345789999999999999999 99999999999999977 89999999999999999999999999999999999
Q ss_pred cccCCC
Q psy2618 277 GKESEN 282 (390)
Q Consensus 277 ~~~~~~ 282 (390)
+++...
T Consensus 87 a~~~~~ 92 (96)
T 2dgx_A 87 ATGASG 92 (96)
T ss_dssp CCCSSC
T ss_pred cCCCCC
Confidence 977654
No 199
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=4.2e-17 Score=114.19 Aligned_cols=78 Identities=23% Similarity=0.223 Sum_probs=68.6
Q ss_pred CCCCCe-EEEeCCChhccHHH----HHHHhccc-CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 4 ESQPTT-LYVGNLDVSVTEEL----LCALFSQI-GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 4 ~~~~~~-l~v~nLp~~~~~~~----l~~~f~~~-G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
..++.| |||+|||+++++++ |+++|+.| |+|++|. .|+|||+|.+.++|.+|+++|+|..+.|++|+
T Consensus 5 ~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt-------gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~ 77 (96)
T 2diu_A 5 SSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT-------GCSAILRFINQDSAERAQKRMENEDVFGNRII 77 (96)
T ss_dssp CCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC-------TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCE
T ss_pred CCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe-------cCEEEEEECCHHHHHHHHHHhcCCccCCceEE
Confidence 345666 99999999999987 55899999 5999882 38999999999999999999999999999999
Q ss_pred EeecCCCCCCC
Q psy2618 78 VNWASSPGNQP 88 (390)
Q Consensus 78 v~~~~~~~~~~ 88 (390)
|.+++...+..
T Consensus 78 v~~A~~~sd~~ 88 (96)
T 2diu_A 78 VSFTPKNRELC 88 (96)
T ss_dssp EESSCCSCCCC
T ss_pred EEecCCCccee
Confidence 99998866543
No 200
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.6e-17 Score=119.58 Aligned_cols=86 Identities=24% Similarity=0.589 Sum_probs=78.6
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||+++++++|+++|+.||.|..|.+++++.+ ++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 87 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKV 87 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCS--SCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCC--CCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEE
Confidence 34566899999999999999999999999999999999998544 6899999999999999999999999999999999
Q ss_pred eecCCCCC
Q psy2618 170 NWSTRKPP 177 (390)
Q Consensus 170 ~~~~~~~~ 177 (390)
.++.....
T Consensus 88 ~~a~~~~~ 95 (103)
T 2cqi_A 88 NWATTPSS 95 (103)
T ss_dssp EECCCTTC
T ss_pred EECCCCcc
Confidence 99987543
No 201
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.72 E-value=2.4e-17 Score=118.25 Aligned_cols=78 Identities=18% Similarity=0.372 Sum_probs=71.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
++.+.++|||+|||+++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++ +++..+.|+.|.|+
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~ 85 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPK 85 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEE
Confidence 567899999999999999999999999999999999998753 56899999999999999996 58889999999998
Q ss_pred ec
Q psy2618 80 WA 81 (390)
Q Consensus 80 ~~ 81 (390)
++
T Consensus 86 ~A 87 (87)
T 3s7r_A 86 KA 87 (87)
T ss_dssp EC
T ss_pred eC
Confidence 75
No 202
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=129.25 Aligned_cols=86 Identities=20% Similarity=0.433 Sum_probs=79.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeE--EEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCc----eeCC
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN--CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ----WLGS 164 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~----~~~g 164 (390)
.....++|||+|||+++++++|+++|+.||.|.. |++++++.+|+++|||||+|.+. +|.+|++.|++. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 3456789999999999999999999999999976 99999999999999999999999 999999999999 9999
Q ss_pred eeEEEeecCCCCC
Q psy2618 165 RSIRTNWSTRKPP 177 (390)
Q Consensus 165 ~~i~v~~~~~~~~ 177 (390)
+.|.|.++.+...
T Consensus 98 r~l~V~~a~~~~~ 110 (131)
T 2m2b_A 98 KTINVEFAKGSKR 110 (131)
T ss_dssp CCCCCEECCCSCC
T ss_pred EEEEEEECCCCCC
Confidence 9999999977543
No 203
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.72 E-value=1.3e-17 Score=121.78 Aligned_cols=82 Identities=18% Similarity=0.257 Sum_probs=76.1
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|++
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34568999999999999999999999999999999999989999999999999999999999999999999999999998
Q ss_pred cC
Q psy2618 172 ST 173 (390)
Q Consensus 172 ~~ 173 (390)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 75
No 204
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.72 E-value=1e-16 Score=118.77 Aligned_cols=80 Identities=23% Similarity=0.558 Sum_probs=73.2
Q ss_pred CCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCC
Q psy2618 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283 (390)
Q Consensus 204 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 283 (390)
...++|||+|||..+++++|+++|++||.|+++.++ +++|||+|.+.++|.+|++.|++..++|+.|.|.++++....
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~--~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~ 86 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL--KDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQK 86 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC--SSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCCC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCccc
Confidence 345789999999999999999999999999999987 569999999999999999999999999999999999887654
Q ss_pred CC
Q psy2618 284 ST 285 (390)
Q Consensus 284 ~~ 285 (390)
..
T Consensus 87 ~~ 88 (103)
T 2dgu_A 87 RK 88 (103)
T ss_dssp CC
T ss_pred ch
Confidence 43
No 205
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=117.88 Aligned_cols=77 Identities=30% Similarity=0.509 Sum_probs=71.7
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh-cCeeeccceeeEeec
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM-NKRVFLEKEMKVNWA 81 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l-~~~~~~g~~l~v~~~ 81 (390)
++.+.++|||+|||.++++++|+++|+.||.|.+|++.++ +|||||+|.+.++|++|++.| ++..+.|+.|+|.|+
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~---kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~a 84 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR---QQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWG 84 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEEC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC---CCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEec
Confidence 4567899999999999999999999999999999999864 679999999999999999988 999999999999987
Q ss_pred C
Q psy2618 82 S 82 (390)
Q Consensus 82 ~ 82 (390)
+
T Consensus 85 k 85 (85)
T 2ytc_A 85 R 85 (85)
T ss_dssp C
T ss_pred C
Confidence 4
No 206
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.72 E-value=3e-17 Score=121.75 Aligned_cols=83 Identities=19% Similarity=0.409 Sum_probs=74.9
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||+++++++|+++|+.|| |.+|++..++. ++|||||+|.+.++|++|+ .|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 88 (103)
T 2dng_A 11 PTEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVD 88 (103)
T ss_dssp CSSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEE
Confidence 346789999999999999999999999997 99999998864 5689999999999999999 799999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++......
T Consensus 89 ~a~~~~~~ 96 (103)
T 2dng_A 89 IAEGRKQD 96 (103)
T ss_dssp ECCCCCCC
T ss_pred EecCCCCC
Confidence 99875443
No 207
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.72 E-value=1.9e-17 Score=131.80 Aligned_cols=82 Identities=20% Similarity=0.315 Sum_probs=77.3
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCC--CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFG--EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
..++|||+|||+++++++|+++|+.|| .|.++.++.|+.+|+++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 468999999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q psy2618 172 STRK 175 (390)
Q Consensus 172 ~~~~ 175 (390)
+...
T Consensus 134 a~~~ 137 (156)
T 3n9u_C 134 ATRQ 137 (156)
T ss_dssp CCHH
T ss_pred cCCC
Confidence 8643
No 208
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.7e-17 Score=116.72 Aligned_cols=76 Identities=32% Similarity=0.583 Sum_probs=71.8
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHh-cCceecCeEEEEEecc
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESI-HNTDINGHTVKCFWGK 278 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l-~~~~~~g~~i~v~~~~ 278 (390)
....++|||+|||..+++++|+++|++||.|.++.+.+++|+|||+|.+.++|.+|++.| ++..++|+.|+|.|++
T Consensus 9 ~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 9 DKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQRQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp CSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECCCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 345678999999999999999999999999999999999999999999999999999998 9999999999999975
No 209
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.72 E-value=6.6e-17 Score=124.20 Aligned_cols=83 Identities=20% Similarity=0.223 Sum_probs=75.9
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
..+.++|||+|||.++++++|+++|+.||.|.+|++..+++ ++|||||+|.+.++|++|++.|++..+.|+.|+|.++
T Consensus 32 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a 111 (124)
T 2kt5_A 32 VETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLV 111 (124)
T ss_dssp CSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEe
Confidence 35678999999999999999999999999999999988753 5789999999999999999999999999999999999
Q ss_pred CCCCC
Q psy2618 82 SSPGN 86 (390)
Q Consensus 82 ~~~~~ 86 (390)
.....
T Consensus 112 ~~~~~ 116 (124)
T 2kt5_A 112 ASQID 116 (124)
T ss_dssp CCTTC
T ss_pred CCCCC
Confidence 87443
No 210
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.72 E-value=1.4e-17 Score=122.68 Aligned_cols=84 Identities=27% Similarity=0.517 Sum_probs=74.9
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCC-CCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDP-QTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~-~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
......++|||+|||+++++++|+++|+.|| |.++.+++++ .+|+++|||||+|.+.++|.+|+ .+++..+.|+.|.
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~ 91 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIR 91 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEE
Confidence 3455679999999999999999999999999 9999999998 68999999999999999999999 8999999999999
Q ss_pred EeecCCC
Q psy2618 169 TNWSTRK 175 (390)
Q Consensus 169 v~~~~~~ 175 (390)
|.++..+
T Consensus 92 V~~a~~~ 98 (100)
T 2j76_E 92 VDVADQA 98 (100)
T ss_dssp CEECCCS
T ss_pred EEeccCC
Confidence 9998765
No 211
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=7.4e-18 Score=125.40 Aligned_cols=82 Identities=28% Similarity=0.506 Sum_probs=75.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
.+.+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 4 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 83 (104)
T 1p1t_A 4 VDRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVD 83 (104)
T ss_dssp SHHHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEE
T ss_pred cCCCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEE
Confidence 345679999999999999999999999999999999998753 47899999999999999999999999999999999
Q ss_pred ecCCC
Q psy2618 80 WASSP 84 (390)
Q Consensus 80 ~~~~~ 84 (390)
++...
T Consensus 84 ~a~~~ 88 (104)
T 1p1t_A 84 NAASE 88 (104)
T ss_dssp ETTCT
T ss_pred eCCCc
Confidence 99764
No 212
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=122.43 Aligned_cols=81 Identities=17% Similarity=0.248 Sum_probs=72.7
Q ss_pred CCCCCeEEEeCCChhc------cHHHHHHHhcccCCceEEEEeecC-CCCCeEEEEEccHHHHHHHHHHhcCeeeccc-e
Q psy2618 4 ESQPTTLYVGNLDVSV------TEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFVHHTVAATALAAMNKRVFLEK-E 75 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~------~~~~l~~~f~~~G~v~~v~~~~~~-~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~-~ 75 (390)
+...++|||+|||+.+ ++++|+++|+.||.|.+|++.+.. .++|||||+|.+.++|.+|++.||+..+.|+ .
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~ 91 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHT 91 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCE
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCce
Confidence 4457899999999999 789999999999999999987432 3689999999999999999999999999998 9
Q ss_pred eeEeecCCC
Q psy2618 76 MKVNWASSP 84 (390)
Q Consensus 76 l~v~~~~~~ 84 (390)
|+|.++...
T Consensus 92 l~V~~a~~~ 100 (105)
T 2nlw_A 92 FRVNLFTDF 100 (105)
T ss_dssp EEEECSCCC
T ss_pred EEEEEcchH
Confidence 999998753
No 213
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.72 E-value=7.7e-18 Score=127.70 Aligned_cols=105 Identities=16% Similarity=0.313 Sum_probs=91.4
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+|||.++++++|+++|+.||.|.++.++.+ +.++|||||+|.+.++|..|++.|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~---~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 81 (115)
T 3lqv_A 5 PEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNT---PETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLY 81 (115)
T ss_dssp TTCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECS---TTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeC---CCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 445689999999999999999999999999999999875 34699999999999999999999999999999999999
Q ss_pred cCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCcHHHHHhhhcCCCc
Q psy2618 172 STRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGT 232 (390)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~ 232 (390)
+.+.... .+++...++++|.++|++||.
T Consensus 82 a~~~~~~---------------------------------~~~~~~~~~~~l~~~~~~~g~ 109 (115)
T 3lqv_A 82 YNANRAF---------------------------------QKMDTKKKEEQLKLLKEKYGI 109 (115)
T ss_dssp CCHHHHT---------------------------------TTSCHHHHHHHHHHHHHHHCC
T ss_pred ecCChhh---------------------------------hhhhHhHhHHHHHHHHHHhCC
Confidence 8643110 355667889999999999884
No 214
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.72 E-value=3.5e-18 Score=158.76 Aligned_cols=151 Identities=23% Similarity=0.399 Sum_probs=110.0
Q ss_pred HHHHHhcccCCceEEEEee----cC-CCCCeE-----EEEEccHHHHHHHHHHhcCeeeccc---------------eee
Q psy2618 23 LLCALFSQIGPVKGCKVIR----EP-GNDPYA-----FLEFVHHTVAATALAAMNKRVFLEK---------------EMK 77 (390)
Q Consensus 23 ~l~~~f~~~G~v~~v~~~~----~~-~~~g~a-----fV~F~~~~~A~~a~~~l~~~~~~g~---------------~l~ 77 (390)
.|..+|..+++|..|..+. ++ ...+++ |++|.+..++..++..++......+ .+.
T Consensus 8 ~L~~lF~p~pPl~~~~P~~~~p~~~~~~~~~~gia~~~~~f~~~~~~~~~~~~e~~~~~~~~~~~~k~~~~~~~~~~~~~ 87 (437)
T 3pgw_S 8 NLLALFAPRDPIPYLPPLEKLPHEKHHNQPYCGIAPYIREFEDPRDAPPPTRAETREERMERKRREKIERRQQEVETELK 87 (437)
T ss_pred cHHHhcCCCCCCcCCCCcccccccccCCCCcccHHHHHHhhcCcccccccccccCHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3889999999998773321 11 123344 7888776655444432221111110 111
Q ss_pred EeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHh
Q psy2618 78 VNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157 (390)
Q Consensus 78 v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l 157 (390)
+. .............++|||+|||+.+|+++|.++|+.||.|..|.|+.+..++.++|||||+|.+.++|..||+.|
T Consensus 88 ~~---~p~~~~~~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~l 164 (437)
T 3pgw_S 88 MW---DPHNDPNAQGDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHA 164 (437)
T ss_pred hc---CCcccccccCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHc
Confidence 10 111112223455689999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCceeCCeeEEEeecCCCC
Q psy2618 158 NGQWLGSRSIRTNWSTRKP 176 (390)
Q Consensus 158 ~~~~~~g~~i~v~~~~~~~ 176 (390)
++..|.|+.|.|.++....
T Consensus 165 ng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 165 DGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred CCCEECCEEEEEEEeCCCC
Confidence 9999999999999997654
No 215
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=1.4e-17 Score=122.36 Aligned_cols=81 Identities=20% Similarity=0.294 Sum_probs=73.0
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
....++|||+|||+++++++|+++|+.||.|.+++++.++. ++|||||+|.+.++|++|++.||+..+.|+.|+|.+
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~ 91 (98)
T 2cqp_A 12 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVL 91 (98)
T ss_dssp CCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEE
Confidence 45678999999999999999999999999998777776643 468999999999999999999999999999999999
Q ss_pred cCCC
Q psy2618 81 ASSP 84 (390)
Q Consensus 81 ~~~~ 84 (390)
+..+
T Consensus 92 a~~~ 95 (98)
T 2cqp_A 92 GSGP 95 (98)
T ss_dssp SSCS
T ss_pred cCCC
Confidence 8754
No 216
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=3.1e-17 Score=121.23 Aligned_cols=81 Identities=30% Similarity=0.396 Sum_probs=71.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeec--CCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~--~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
...+.++|||+|||+++++++|+++|+.||.| ++..+ ..++|||||+|.+.++|++|++.|++..+.|+.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ 87 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLEL 87 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEE
Confidence 45678999999999999999999999999987 33333 34688999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy2618 81 ASSPGN 86 (390)
Q Consensus 81 ~~~~~~ 86 (390)
+.....
T Consensus 88 a~~~~~ 93 (101)
T 2fc9_A 88 QGPRGS 93 (101)
T ss_dssp CSSCCC
T ss_pred cCCCCC
Confidence 987644
No 217
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=7.4e-17 Score=116.72 Aligned_cols=83 Identities=23% Similarity=0.389 Sum_probs=77.5
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+++++++|+++|+.| .|.++.++++ .+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~-~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~ 82 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRN-AHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVF 82 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEEC-TTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEEC-CCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEE
Confidence 44567899999999999999999999999 9999999999 788999999999999999999999 99999999999999
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
++..+.
T Consensus 83 ~a~~~~ 88 (91)
T 2dgw_A 83 REKSGP 88 (91)
T ss_dssp EESSCC
T ss_pred ECCcCC
Confidence 987664
No 218
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.71 E-value=3.8e-17 Score=123.93 Aligned_cols=82 Identities=20% Similarity=0.310 Sum_probs=72.3
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCe-EEEEEccHHHHHHHHHHhcCeeecc--ceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPY-AFLEFVHHTVAATALAAMNKRVFLE--KEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~-afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~ 82 (390)
...+|+|+||++.+++++|+++|+.||.|.+|++... .+|+ |||+|.+.++|.+|++.|||..+.| +.|+|++++
T Consensus 27 ~VL~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 27 PVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp SEEEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred ceEEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 4456779999999999999999999999999988764 3577 9999999999999999999999998 999999998
Q ss_pred CCCCCCC
Q psy2618 83 SPGNQPK 89 (390)
Q Consensus 83 ~~~~~~~ 89 (390)
.....-.
T Consensus 105 ~~~l~v~ 111 (130)
T 3zzy_A 105 LTSLNVK 111 (130)
T ss_dssp CSSCCCC
T ss_pred CCceeEE
Confidence 7654333
No 219
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.71 E-value=3.2e-17 Score=118.18 Aligned_cols=79 Identities=27% Similarity=0.441 Sum_probs=72.9
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|+ .|++..+.|+.|+|.++
T Consensus 4 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a 82 (89)
T 3ucg_A 4 ADARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPK 82 (89)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEET
T ss_pred CcCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEc
Confidence 3578999999999999999999999999999999988752 5789999999999999999 89999999999999999
Q ss_pred CCC
Q psy2618 82 SSP 84 (390)
Q Consensus 82 ~~~ 84 (390)
.+.
T Consensus 83 ~~~ 85 (89)
T 3ucg_A 83 RTN 85 (89)
T ss_dssp TTT
T ss_pred cCC
Confidence 763
No 220
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.71 E-value=8.4e-18 Score=122.85 Aligned_cols=80 Identities=20% Similarity=0.274 Sum_probs=70.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
.++.++|||+|||+++++++|+++|+.||.|.+++++.++. ++|||||+|.+.++|++|++.||+..+.|++|+|.+
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~ 91 (95)
T 2ek1_A 12 KPGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSG 91 (95)
T ss_dssp ---CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEe
Confidence 34578999999999999999999999999998888877643 468999999999999999999999999999999998
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
+.+
T Consensus 92 a~s 94 (95)
T 2ek1_A 92 PSS 94 (95)
T ss_dssp CC-
T ss_pred ccC
Confidence 753
No 221
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=8.9e-17 Score=118.25 Aligned_cols=78 Identities=33% Similarity=0.462 Sum_probs=71.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhccc--CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQI--GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~--G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
..+.++|||+|||+++++++|+++|+.| |.|.+|++. ++||||+|.+.++|.+|++.||+..+.|+.|+|.++
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a 86 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI-----RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLA 86 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC-----SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe-----CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEEC
Confidence 3567899999999999999999999999 889988764 569999999999999999999999999999999999
Q ss_pred CCCCC
Q psy2618 82 SSPGN 86 (390)
Q Consensus 82 ~~~~~ 86 (390)
.+...
T Consensus 87 ~~~~~ 91 (99)
T 2cpd_A 87 KPVDK 91 (99)
T ss_dssp CCCCC
T ss_pred CCCCC
Confidence 87554
No 222
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=8.3e-17 Score=116.16 Aligned_cols=79 Identities=20% Similarity=0.469 Sum_probs=73.2
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
....++|||+|||.++++++|+++|++||.|+++.+. +++|||+|.+.++|.+|++.|++..++|+.|+|.+++++..
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 82 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII--KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKSK 82 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE--TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCCC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE--CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCCC
Confidence 3456789999999999999999999999999999998 78999999999999999999999999999999999987754
Q ss_pred C
Q psy2618 283 N 283 (390)
Q Consensus 283 ~ 283 (390)
.
T Consensus 83 ~ 83 (90)
T 2dnq_A 83 A 83 (90)
T ss_dssp C
T ss_pred C
Confidence 3
No 223
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.71 E-value=1.7e-17 Score=128.64 Aligned_cols=84 Identities=19% Similarity=0.295 Sum_probs=75.9
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceE--EEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCe----eecc
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKG--CKVIREPG---NDPYAFLEFVHHTVAATALAAMNKR----VFLE 73 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~--v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~----~~~g 73 (390)
++.+.++|||+|||+++++++|+++|+.||.|.+ |+++.++. ++|||||+|.+. +|.+|++.||+. .+.|
T Consensus 19 ~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~g 97 (131)
T 2m2b_A 19 SENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDG 97 (131)
T ss_dssp CSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGG
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCC
Confidence 4567899999999999999999999999999976 99988763 689999999999 999999999999 9999
Q ss_pred ceeeEeecCCCCCC
Q psy2618 74 KEMKVNWASSPGNQ 87 (390)
Q Consensus 74 ~~l~v~~~~~~~~~ 87 (390)
+.|+|.++......
T Consensus 98 r~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 98 KTINVEFAKGSKRD 111 (131)
T ss_dssp CCCCCEECCCSCCC
T ss_pred EEEEEEECCCCCCC
Confidence 99999999875443
No 224
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=123.08 Aligned_cols=86 Identities=20% Similarity=0.309 Sum_probs=76.4
Q ss_pred CCCCCCCCeEEEeCCChhccHHHHHHHhcccCC-ceEEEEe-ecC---CCCCeEEEEEccHHHHHHHHHHhc--Ceeecc
Q psy2618 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGP-VKGCKVI-REP---GNDPYAFLEFVHHTVAATALAAMN--KRVFLE 73 (390)
Q Consensus 1 ~~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~-v~~v~~~-~~~---~~~g~afV~F~~~~~A~~a~~~l~--~~~~~g 73 (390)
++...+.++|||+|||+++++++|+++|+.||. |.+|.+. .++ .++|||||+|.+.++|.+|++.|+ +..+.|
T Consensus 2 v~~s~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g 81 (109)
T 2dis_A 2 SSGSSGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG 81 (109)
T ss_dssp CSCCCCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT
T ss_pred cccccCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC
Confidence 355678999999999999999999999999998 9999887 443 367899999999999999999996 589999
Q ss_pred ceeeEeecCCCCC
Q psy2618 74 KEMKVNWASSPGN 86 (390)
Q Consensus 74 ~~l~v~~~~~~~~ 86 (390)
+.|+|.++.+...
T Consensus 82 ~~l~V~~a~~~~~ 94 (109)
T 2dis_A 82 HQIAVDWAEPEID 94 (109)
T ss_dssp BCCEEEESCSSCS
T ss_pred CeEEEEEcCCCCC
Confidence 9999999987544
No 225
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=2.3e-17 Score=124.82 Aligned_cols=81 Identities=27% Similarity=0.434 Sum_probs=77.1
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|+ .|++..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 34689999999999999999999999999999999999999999999999999999999999 99999999999999998
Q ss_pred CC
Q psy2618 173 TR 174 (390)
Q Consensus 173 ~~ 174 (390)
..
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 226
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=1.6e-16 Score=118.75 Aligned_cols=79 Identities=16% Similarity=0.230 Sum_probs=73.7
Q ss_pred CCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecC-----eEEEEEecc
Q psy2618 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDING-----HTVKCFWGK 278 (390)
Q Consensus 204 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-----~~i~v~~~~ 278 (390)
...++|||+|||.++++++|+++|+.||.|+++.++++ |+|||+|.+.++|.+|++.||+..++| +.|+|.+++
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~ 91 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDG 91 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT-TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESS
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC-CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCC
Confidence 34678999999999999999999999999999999988 999999999999999999999999999 999999998
Q ss_pred cCCCC
Q psy2618 279 ESENN 283 (390)
Q Consensus 279 ~~~~~ 283 (390)
+....
T Consensus 92 ~~~~~ 96 (108)
T 1x4c_A 92 PRSPS 96 (108)
T ss_dssp CCSCC
T ss_pred CCCCC
Confidence 86543
No 227
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.1e-16 Score=118.71 Aligned_cols=87 Identities=24% Similarity=0.360 Sum_probs=79.6
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.......++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++ +++.+.|+.|.
T Consensus 9 ~~~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~ 86 (103)
T 2cqg_A 9 KRAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCD 86 (103)
T ss_dssp SCCCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEE
T ss_pred CCccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEE
Confidence 3345567899999999999999999999999999999999999999999999999999999999998 57899999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.++..+..
T Consensus 87 v~~a~~~~~ 95 (103)
T 2cqg_A 87 CKLPNSKQS 95 (103)
T ss_dssp EECCCTTCC
T ss_pred EEecCCCCc
Confidence 999987654
No 228
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.3e-17 Score=124.34 Aligned_cols=84 Identities=25% Similarity=0.586 Sum_probs=79.0
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
...++|||+|||+++++++|+++|+.||.|..+.++.++.+++++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a 103 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRA 103 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEEC
Confidence 3468999999999999999999999999999999999999999999999999999999999988 999999999999999
Q ss_pred CCCCC
Q psy2618 173 TRKPP 177 (390)
Q Consensus 173 ~~~~~ 177 (390)
.++..
T Consensus 104 ~~~~~ 108 (116)
T 1x4b_A 104 VAREE 108 (116)
T ss_dssp SSCCC
T ss_pred CCCcc
Confidence 87654
No 229
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.7e-17 Score=121.54 Aligned_cols=80 Identities=31% Similarity=0.561 Sum_probs=74.5
Q ss_pred CCCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 201 ~~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
......++|||+||+..+++++|+++|+.||.|.++.+.+.+|+|||+|.+.++|.+|++.||+..++|+.|+|.|++++
T Consensus 22 ~~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 22 SAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TSCSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 34455688999999999999999999999999999999999999999999999999999999999999999999998763
No 230
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=2.9e-17 Score=126.66 Aligned_cols=84 Identities=19% Similarity=0.332 Sum_probs=76.0
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++.||+..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 345678999999999999999999999999999999987753 57899999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 80 WASSPGN 86 (390)
Q Consensus 80 ~~~~~~~ 86 (390)
++.....
T Consensus 98 ~a~~~~~ 104 (126)
T 3ex7_B 98 WCFVRGP 104 (126)
T ss_dssp ESEESSS
T ss_pred EecCCCC
Confidence 9976443
No 231
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=3.1e-17 Score=119.22 Aligned_cols=81 Identities=26% Similarity=0.389 Sum_probs=71.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCC-ceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcC-eeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNK-RVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~-v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~-~~~~g~~l~v~~ 80 (390)
...+.++|||+|||.++++++|+++|+.||. |..+.+. +++||||+|.+.++|++|++.||+ ..+.|+.|+|.+
T Consensus 4 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~----~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~ 79 (93)
T 2cqh_A 4 GSSGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL----KSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDY 79 (93)
T ss_dssp CCCCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE----ETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc----CCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEE
Confidence 4567899999999999999999999999999 6666553 367999999999999999999999 999999999999
Q ss_pred cCCCCCC
Q psy2618 81 ASSPGNQ 87 (390)
Q Consensus 81 ~~~~~~~ 87 (390)
+.+...+
T Consensus 80 a~~~~~~ 86 (93)
T 2cqh_A 80 SVSKKLR 86 (93)
T ss_dssp CCCCCCC
T ss_pred ccCcccc
Confidence 9876443
No 232
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.71 E-value=4.9e-17 Score=117.66 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=73.8
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
+..+.++|||+|||+++++++|+++|+.| .|.+|++..+.+ ++|+|||+|.+.++|.+|++ |++..+.|+.|.|.+
T Consensus 6 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~ 83 (91)
T 2dgw_A 6 SGTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFR 83 (91)
T ss_dssp CCCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEE
T ss_pred CCCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEE
Confidence 45678999999999999999999999999 899999998743 46899999999999999999 999999999999999
Q ss_pred cCCC
Q psy2618 81 ASSP 84 (390)
Q Consensus 81 ~~~~ 84 (390)
+...
T Consensus 84 a~~~ 87 (91)
T 2dgw_A 84 EKSG 87 (91)
T ss_dssp ESSC
T ss_pred CCcC
Confidence 9764
No 233
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.71 E-value=1.4e-16 Score=122.37 Aligned_cols=85 Identities=22% Similarity=0.328 Sum_probs=80.0
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||..+++++|+++|+.||.|.++.++.++ +|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~-~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCS-SSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECC-CCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEE
Confidence 45667999999999999999999999999999999999998 88999999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
++....
T Consensus 110 ~a~~~~ 115 (124)
T 2kt5_A 110 LVASQI 115 (124)
T ss_dssp EECCTT
T ss_pred EeCCCC
Confidence 997654
No 234
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.71 E-value=5.7e-17 Score=117.64 Aligned_cols=83 Identities=30% Similarity=0.376 Sum_probs=77.2
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+|||.++++++|+++|+.||.|..+.++++ +++++|||||+|.+.++|.+|++.|++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~--~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~ 82 (92)
T 2dgv_A 5 SSGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKME--NGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRI 82 (92)
T ss_dssp SSSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEES--SSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcc--CCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEE
Confidence 456789999999999999999999999999999999884 778999999999999999999999999999999999999
Q ss_pred cCCCC
Q psy2618 172 STRKP 176 (390)
Q Consensus 172 ~~~~~ 176 (390)
+....
T Consensus 83 a~~~~ 87 (92)
T 2dgv_A 83 DRNAS 87 (92)
T ss_dssp CSCCS
T ss_pred cCCCC
Confidence 97654
No 235
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.71 E-value=8.6e-17 Score=120.82 Aligned_cols=86 Identities=22% Similarity=0.344 Sum_probs=78.2
Q ss_pred CCCceEEEEcCCCcccCHHHHH---HHhCCCCCeeEEEEeeCCCCC---CCCcEEEEEecCHHHHHHHHHHhcCceeCCe
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLK---EAFAPFGEISNCRIVRDPQTL---KSKGYAFVSFVKKAEAENAITAMNGQWLGSR 165 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~---~~f~~~G~i~~~~~~~~~~~g---~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~ 165 (390)
....++|||+|||+++++++|+ ++|++||.|.++.++++..++ +++|||||+|.+.++|.+|++.|++..+.|+
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr 91 (111)
T 2cpi_A 12 VVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGR 91 (111)
T ss_dssp CCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred ccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECCE
Confidence 3456899999999999999999 999999999999999887654 4669999999999999999999999999999
Q ss_pred eEEEeecCCCCC
Q psy2618 166 SIRTNWSTRKPP 177 (390)
Q Consensus 166 ~i~v~~~~~~~~ 177 (390)
.|+|.++.++..
T Consensus 92 ~l~V~~a~~k~~ 103 (111)
T 2cpi_A 92 TLKASLGTTKYC 103 (111)
T ss_dssp EEEEESCCCCSC
T ss_pred EEEEEecccccc
Confidence 999999987753
No 236
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.71 E-value=1.3e-17 Score=115.94 Aligned_cols=75 Identities=23% Similarity=0.448 Sum_probs=71.7
Q ss_pred EEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 97 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
+|||+|||+++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 48999999999999999999999999999999998899999999999999999999997 8999999999999875
No 237
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.71 E-value=5.5e-17 Score=129.99 Aligned_cols=83 Identities=25% Similarity=0.391 Sum_probs=76.2
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
..+.++|||+|||.++++++|+++|+.||+|.+|++..++. +++||||+|.+.++|++||+.|++..|.|+.|+|.+
T Consensus 36 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~ 115 (156)
T 1h2v_Z 36 LKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDW 115 (156)
T ss_dssp TTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEE
Confidence 35789999999999999999999999999999999998864 568999999999999999999999999999999999
Q ss_pred cCCCCC
Q psy2618 81 ASSPGN 86 (390)
Q Consensus 81 ~~~~~~ 86 (390)
+.....
T Consensus 116 a~~~~~ 121 (156)
T 1h2v_Z 116 DAGFKE 121 (156)
T ss_dssp ESCCCT
T ss_pred CCCCCC
Confidence 987443
No 238
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.71 E-value=4.9e-17 Score=125.42 Aligned_cols=88 Identities=28% Similarity=0.493 Sum_probs=81.8
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+++++++|+++|+.||.|..+.++.++.++.++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 97 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVD 97 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEE
Confidence 44567899999999999999999999999999999999998899999999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 171 WSTRKPPA 178 (390)
Q Consensus 171 ~~~~~~~~ 178 (390)
++..+...
T Consensus 98 ~a~~~~~~ 105 (126)
T 3ex7_B 98 WCFVRGPP 105 (126)
T ss_dssp ESEESSSC
T ss_pred EecCCCCC
Confidence 99765443
No 239
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.70 E-value=7.4e-17 Score=129.25 Aligned_cols=87 Identities=29% Similarity=0.458 Sum_probs=81.8
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||.++++++|+++|+.||.|..|.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 114 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTD 114 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 171 WSTRKPP 177 (390)
Q Consensus 171 ~~~~~~~ 177 (390)
|+.....
T Consensus 115 ~a~~~~~ 121 (156)
T 1h2v_Z 115 WDAGFKE 121 (156)
T ss_dssp EESCCCT
T ss_pred ECCCCCC
Confidence 9987544
No 240
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.1e-17 Score=119.45 Aligned_cols=85 Identities=25% Similarity=0.294 Sum_probs=77.1
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeE-EEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN-CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~-~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.+....++|||+|||+++++++|+++|+.||.|.. +.++.+ .+|+++|||||+|.+.++|.+|++. ++..++|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~-~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~ 87 (104)
T 1wg5_A 10 PDTANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVD-FQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIE 87 (104)
T ss_dssp SSCSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBC-SSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEEC-CCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEE
Confidence 34556789999999999999999999999999987 888888 7889999999999999999999987 99999999999
Q ss_pred EeecCCCC
Q psy2618 169 TNWSTRKP 176 (390)
Q Consensus 169 v~~~~~~~ 176 (390)
|.++....
T Consensus 88 v~~~~~~~ 95 (104)
T 1wg5_A 88 IFKSSRAE 95 (104)
T ss_dssp EEEECTTT
T ss_pred EEECCHHH
Confidence 99886543
No 241
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.70 E-value=6.8e-17 Score=121.33 Aligned_cols=76 Identities=30% Similarity=0.575 Sum_probs=70.5
Q ss_pred CCCCeEEEeCCChh-ccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 5 SQPTTLYVGNLDVS-VTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 5 ~~~~~l~v~nLp~~-~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
...++|||+|||++ +++++|+++|+.||.|.+|++ .++||||+|.+.++|++|++.|++..+.|+.|+|.++..
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 99 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGE 99 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCC
T ss_pred CCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCC
Confidence 34589999999999 999999999999999999988 467999999999999999999999999999999999975
Q ss_pred CC
Q psy2618 84 PG 85 (390)
Q Consensus 84 ~~ 85 (390)
..
T Consensus 100 ~~ 101 (110)
T 1wf1_A 100 PK 101 (110)
T ss_dssp CC
T ss_pred CC
Confidence 43
No 242
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.6e-17 Score=116.24 Aligned_cols=76 Identities=32% Similarity=0.653 Sum_probs=73.0
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
++|||+|||.++++++|+++|++||.|.++.+++++.+++++|||||+|.+.++|.+|++.++ ..+.|+.|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 479999999999999999999999999999999999999999999999999999999999988 9999999999986
No 243
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=9.6e-17 Score=119.02 Aligned_cols=83 Identities=18% Similarity=0.233 Sum_probs=74.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||+++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|++ ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~ 88 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCK 88 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEE
Confidence 456789999999999999999999999999999999998753 56899999999999999998 5788999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++.+....
T Consensus 89 ~a~~~~~~ 96 (103)
T 2cqg_A 89 LPNSKQSQ 96 (103)
T ss_dssp CCCTTCCC
T ss_pred ecCCCCcC
Confidence 99876543
No 244
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.70 E-value=1.9e-17 Score=128.81 Aligned_cols=84 Identities=26% Similarity=0.345 Sum_probs=76.3
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||+++++++|+++|+.||.|.+|++..++ .++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 43 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~ 122 (135)
T 2lea_A 43 DVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQ 122 (135)
T ss_dssp SGGGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 34567899999999999999999999999999999998764 367899999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 80 WASSPGN 86 (390)
Q Consensus 80 ~~~~~~~ 86 (390)
++.....
T Consensus 123 ~a~~~~~ 129 (135)
T 2lea_A 123 MARYGRP 129 (135)
T ss_dssp ECCCCCC
T ss_pred ECCCCCC
Confidence 9987543
No 245
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.70 E-value=2.8e-17 Score=130.85 Aligned_cols=78 Identities=19% Similarity=0.264 Sum_probs=71.7
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccC--CceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIG--PVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G--~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
+.++|||+|||+++++++|+++|+.|| .|.+|+++.++. ++|||||+|.+.++|++||+.||+..+.|+.|.|.+
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~ 133 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRP 133 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEE
Confidence 568999999999999999999999999 999999998853 568999999999999999999999999999999999
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
+..
T Consensus 134 a~~ 136 (156)
T 3n9u_C 134 ATR 136 (156)
T ss_dssp CCH
T ss_pred cCC
Confidence 864
No 246
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.2e-17 Score=122.82 Aligned_cols=85 Identities=27% Similarity=0.499 Sum_probs=79.8
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
...++|||+|||..+++++|+++|+.||.|..+.++.++.+|+++|||||+|.+.++|.+|++.+++..+.|+.|.|.++
T Consensus 6 ~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a 85 (104)
T 1p1t_A 6 RSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNA 85 (104)
T ss_dssp HHHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEET
T ss_pred CCccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeC
Confidence 34689999999999999999999999999999999999889999999999999999999999999999999999999999
Q ss_pred CCCCC
Q psy2618 173 TRKPP 177 (390)
Q Consensus 173 ~~~~~ 177 (390)
.....
T Consensus 86 ~~~~~ 90 (104)
T 1p1t_A 86 ASEKN 90 (104)
T ss_dssp TCTTH
T ss_pred CCccc
Confidence 76543
No 247
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.70 E-value=2.3e-17 Score=120.73 Aligned_cols=82 Identities=17% Similarity=0.244 Sum_probs=73.1
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
++++.++|||+|||.++++++|+++|+.||.|..+ .....++|||||+|.+.++|.+|++.|++..+.|+.|.|.++.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~ 89 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTG 89 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcC
Confidence 45678999999999999999999999999998877 3444468899999999999999999999999999999999997
Q ss_pred CCCC
Q psy2618 83 SPGN 86 (390)
Q Consensus 83 ~~~~ 86 (390)
....
T Consensus 90 ~~~~ 93 (96)
T 1fjc_A 90 EKGG 93 (96)
T ss_dssp SSCC
T ss_pred CCCC
Confidence 6543
No 248
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.8e-17 Score=125.38 Aligned_cols=78 Identities=18% Similarity=0.333 Sum_probs=72.3
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
.+.++|||+|||.++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|++|+ .||+..+.|+.|.|.++
T Consensus 23 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a 101 (114)
T 2cq4_A 23 RDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQAS 101 (114)
T ss_dssp HHHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEH
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEec
Confidence 4568999999999999999999999999999999987754 6789999999999999999 89999999999999998
Q ss_pred CC
Q psy2618 82 SS 83 (390)
Q Consensus 82 ~~ 83 (390)
..
T Consensus 102 ~~ 103 (114)
T 2cq4_A 102 QA 103 (114)
T ss_dssp HH
T ss_pred CC
Confidence 64
No 249
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-17 Score=120.97 Aligned_cols=86 Identities=26% Similarity=0.480 Sum_probs=78.3
Q ss_pred CCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 88 ~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
........++|||+|||.++++++|+++|+.||.|.++.+++++. .++|||||+|.+.++|.+|++.|++..+.|+.|
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~--~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 99 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFVTFENSADADRAREKLHGTVVEGRKI 99 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTT--BCTTEEEEECCCSHHHHHHHHHHTTCEETTEEC
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCC--CCceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 344556789999999999999999999999999999999998853 489999999999999999999999999999999
Q ss_pred EEeecCCC
Q psy2618 168 RTNWSTRK 175 (390)
Q Consensus 168 ~v~~~~~~ 175 (390)
.|.++..+
T Consensus 100 ~V~~a~~~ 107 (109)
T 2err_A 100 EVNNATAR 107 (109)
T ss_dssp EEEECCCS
T ss_pred EEEECCCC
Confidence 99998765
No 250
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.6e-17 Score=122.08 Aligned_cols=84 Identities=13% Similarity=0.112 Sum_probs=77.6
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCe-eEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI-SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i-~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
......++|||+|||+++++++|+++|+.||.| ..|.++.++ +|+++|||||+|.+.++|.+|++. ++..+.|+.|.
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~ 87 (114)
T 2cpy_A 10 DVNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDN-NGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAF 87 (114)
T ss_dssp SCCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCT-TSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEE
T ss_pred CCCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECC-CCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEE
Confidence 345567899999999999999999999999999 899999998 899999999999999999999977 99999999999
Q ss_pred EeecCCC
Q psy2618 169 TNWSTRK 175 (390)
Q Consensus 169 v~~~~~~ 175 (390)
|.++..+
T Consensus 88 v~~a~~~ 94 (114)
T 2cpy_A 88 VHVVTLE 94 (114)
T ss_dssp EEEECHH
T ss_pred EEECCHH
Confidence 9998654
No 251
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.7e-17 Score=122.68 Aligned_cols=82 Identities=18% Similarity=0.396 Sum_probs=73.9
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeee--------c
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVF--------L 72 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~--------~ 72 (390)
++.+.++|||+|||.++++++|+++|+.||.|.+|++..+.+ ++|||||+|.+.++|++|++.||+..+ .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 356789999999999999999999999999999999998753 468999999999999999999999998 5
Q ss_pred cceeeEeecCCC
Q psy2618 73 EKEMKVNWASSP 84 (390)
Q Consensus 73 g~~l~v~~~~~~ 84 (390)
+++|.|.++.+.
T Consensus 101 ~~~l~v~~a~p~ 112 (114)
T 1x5o_A 101 TEPLLCKFSGPS 112 (114)
T ss_dssp SSCBEEEECCCS
T ss_pred CCceeEEccCCC
Confidence 788999988753
No 252
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=2.6e-16 Score=117.96 Aligned_cols=80 Identities=23% Similarity=0.473 Sum_probs=73.9
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC---CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~---~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
....++|||+|||..+++++|+++|++||.|+++.+..+ +++|||+|.+.++|.+|++.||+..++|+.|.|.+++.
T Consensus 19 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~ 98 (109)
T 1x4a_A 19 GNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRS 98 (109)
T ss_dssp CCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEccc
Confidence 445678999999999999999999999999999999865 67999999999999999999999999999999999987
Q ss_pred CCC
Q psy2618 280 SEN 282 (390)
Q Consensus 280 ~~~ 282 (390)
...
T Consensus 99 ~~~ 101 (109)
T 1x4a_A 99 GRG 101 (109)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
No 253
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=5.9e-17 Score=120.03 Aligned_cols=80 Identities=16% Similarity=0.301 Sum_probs=73.1
Q ss_pred CCCcceeEE--cCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCcee-----cCeEEEEE
Q psy2618 203 SPTNCTVYC--GGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDI-----NGHTVKCF 275 (390)
Q Consensus 203 ~~~~~~l~v--~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~-----~g~~i~v~ 275 (390)
..++++||| +||+.++++++|+++|++||.|.++.++.+||||||+|.+.++|.+|++.|||..+ .|+.|.|.
T Consensus 22 ~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~ 101 (114)
T 2cq2_A 22 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 101 (114)
T ss_dssp SSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTTCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEE
Confidence 345678999 77999999999999999999999999999999999999999999999999999988 68999999
Q ss_pred ecccCCC
Q psy2618 276 WGKESEN 282 (390)
Q Consensus 276 ~~~~~~~ 282 (390)
|++....
T Consensus 102 ~a~~~p~ 108 (114)
T 2cq2_A 102 FVEKVQW 108 (114)
T ss_dssp EESCCCC
T ss_pred ecccCcc
Confidence 9876543
No 254
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=3.4e-17 Score=123.67 Aligned_cols=80 Identities=14% Similarity=0.111 Sum_probs=73.4
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCc-eEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPV-KGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v-~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||+++++++|+++|+.||.| .+|+++.+++ ++|||||+|.+.++|++||+. ++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~ 89 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVH 89 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEE
Confidence 35678999999999999999999999999999 8899988764 679999999999999999986 9999999999999
Q ss_pred ecCC
Q psy2618 80 WASS 83 (390)
Q Consensus 80 ~~~~ 83 (390)
++..
T Consensus 90 ~a~~ 93 (114)
T 2cpy_A 90 VVTL 93 (114)
T ss_dssp EECH
T ss_pred ECCH
Confidence 9864
No 255
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.5e-17 Score=121.34 Aligned_cols=85 Identities=19% Similarity=0.351 Sum_probs=78.5
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCC-eeEEEEe-eCCCCCCCCcEEEEEecCHHHHHHHHHHhc--CceeCCeeEE
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGE-ISNCRIV-RDPQTLKSKGYAFVSFVKKAEAENAITAMN--GQWLGSRSIR 168 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~-i~~~~~~-~~~~~g~~~g~afv~f~~~~~a~~a~~~l~--~~~~~g~~i~ 168 (390)
.+.++|||+|||+++++++|+++|+.||. |.++.++ .++.+|+++|||||+|.+.++|.+|++.|+ +..+.|+.|.
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~ 85 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIA 85 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCE
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEE
Confidence 45789999999999999999999999998 9999998 788888999999999999999999999996 5899999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.|+.++..
T Consensus 86 V~~a~~~~~ 94 (109)
T 2dis_A 86 VDWAEPEID 94 (109)
T ss_dssp EEESCSSCS
T ss_pred EEEcCCCCC
Confidence 999986644
No 256
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=1.7e-17 Score=116.11 Aligned_cols=73 Identities=27% Similarity=0.464 Sum_probs=68.3
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
++|||+|||.++++++|+++|+.||+|.+|++..++. ++|+|||+|.+.++|++|++.++ ..+.|++|.|+++
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 6899999999999999999999999999999988753 67899999999999999999988 8999999999986
No 257
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=6.9e-17 Score=122.44 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=73.6
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCc----eEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPV----KGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v----~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
..+.++|||+|||.++++++|+++|+.||.| ..+++. ...++|||||+|.+.++|++|++.|++..+.|+.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 3467999999999999999999999999998 566655 44578999999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++......
T Consensus 101 ~a~~~~~~ 108 (115)
T 2cpx_A 101 FGKNKKQR 108 (115)
T ss_dssp ECCCCSCC
T ss_pred EccCCCCC
Confidence 99876543
No 258
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.70 E-value=3.9e-17 Score=122.51 Aligned_cols=78 Identities=18% Similarity=0.236 Sum_probs=71.9
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
+++.++|||+|||.++++++|+++|+.||.|.+|.+.+ +++||||+|.+.++|++|++.||+..+.|+.|.|.|+..
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~---~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~ 83 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPE---GGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPI 83 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCS---SSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeC---CCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCC
Confidence 45678999999999999999999999999999998864 567999999999999999999999999999999999975
Q ss_pred C
Q psy2618 84 P 84 (390)
Q Consensus 84 ~ 84 (390)
.
T Consensus 84 ~ 84 (111)
T 1whx_A 84 G 84 (111)
T ss_dssp T
T ss_pred C
Confidence 3
No 259
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=2.4e-16 Score=114.23 Aligned_cols=79 Identities=19% Similarity=0.394 Sum_probs=72.6
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
....++|||+|||..+++++|+++|+.||.|+++.+.+ ++|||+|.+.++|.+|++.||+..++|+.|+|.+++++..
T Consensus 7 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 84 (92)
T 2dgt_A 7 GKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK--DYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRLR 84 (92)
T ss_dssp CCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS--SEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCCC
Confidence 44567899999999999999999999999999999974 5999999999999999999999999999999999987754
Q ss_pred C
Q psy2618 283 N 283 (390)
Q Consensus 283 ~ 283 (390)
.
T Consensus 85 ~ 85 (92)
T 2dgt_A 85 T 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 260
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.70 E-value=2e-17 Score=121.84 Aligned_cols=79 Identities=27% Similarity=0.471 Sum_probs=70.3
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC----CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP----GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~----~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
....++|||+|||.++++++|+++|+.|| |.+|++..++ .++|||||+|.+.++|.+|+ .|++..+.|+.|.|.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~ 93 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVD 93 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEE
Confidence 45789999999999999999999999999 9999998775 26789999999999999999 899999999999999
Q ss_pred ecCCC
Q psy2618 80 WASSP 84 (390)
Q Consensus 80 ~~~~~ 84 (390)
++...
T Consensus 94 ~a~~~ 98 (100)
T 2j76_E 94 VADQA 98 (100)
T ss_dssp ECCCS
T ss_pred eccCC
Confidence 99764
No 261
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.69 E-value=1.1e-16 Score=114.99 Aligned_cols=77 Identities=21% Similarity=0.269 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
.+.+++|||+|||+++++++|+++|+.| .|.++++. .++|||||+|.+.++|++|++.||+..+.|++|+|.++..
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 77 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPT 77 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCC
Confidence 3578999999999999999999999999 99999884 4678999999999999999999999999999999999865
Q ss_pred C
Q psy2618 84 P 84 (390)
Q Consensus 84 ~ 84 (390)
.
T Consensus 78 ~ 78 (88)
T 1wg1_A 78 D 78 (88)
T ss_dssp C
T ss_pred C
Confidence 3
No 262
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=4.1e-17 Score=123.84 Aligned_cols=79 Identities=16% Similarity=0.117 Sum_probs=72.2
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCC---ceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGP---VKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~---v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
..+.++|||+|||+++++++|+++|+.||. |.+|++..++. ++|||||+|.+.++|++||+ +++..+.|+.|+|
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V 92 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEV 92 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEE
Confidence 456789999999999999999999999999 89999987754 56899999999999999999 9999999999999
Q ss_pred eecCC
Q psy2618 79 NWASS 83 (390)
Q Consensus 79 ~~~~~ 83 (390)
.++..
T Consensus 93 ~~a~~ 97 (118)
T 2db1_A 93 FKSHR 97 (118)
T ss_dssp EEECH
T ss_pred EECCH
Confidence 98753
No 263
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.69 E-value=2.1e-17 Score=114.97 Aligned_cols=72 Identities=19% Similarity=0.326 Sum_probs=67.0
Q ss_pred eEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+|||+|||+++++++|+++|+.||+|.+|++..++. ++|||||+|.+.++|++|++ +++..+.|+.|.|.++
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 699999999999999999999999999999987653 67899999999999999998 8999999999999875
No 264
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.69 E-value=2.2e-17 Score=116.60 Aligned_cols=73 Identities=19% Similarity=0.291 Sum_probs=65.7
Q ss_pred CCeEEEeCCChhc------cHHHHHHHhcccCCceEEEEeecC-CCCCeEEEEEccHHHHHHHHHHhcCeeeccc-eeeE
Q psy2618 7 PTTLYVGNLDVSV------TEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFVHHTVAATALAAMNKRVFLEK-EMKV 78 (390)
Q Consensus 7 ~~~l~v~nLp~~~------~~~~l~~~f~~~G~v~~v~~~~~~-~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~-~l~v 78 (390)
+++|||+|||.++ ++++|+++|+.||+|.+|++.+.. .++|||||+|.+.++|.+|++.||+..+.|+ .|+|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V 80 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRV 80 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEe
Confidence 4799999999999 789999999999999999987432 3689999999999999999999999999999 8876
Q ss_pred e
Q psy2618 79 N 79 (390)
Q Consensus 79 ~ 79 (390)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 265
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.7e-17 Score=118.50 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=75.4
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+++++++|+++|+.||.+ ++.+++++ +++++|||||+|.+.++|++|+ .+++..+.++.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~-~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~ 87 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGP-DGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELF 87 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESS-SSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECC-CCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEE
Confidence 45567899999999999999999999999955 99999997 8899999999999999999999 579999999999999
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
++....
T Consensus 88 ~~~~~~ 93 (102)
T 1wez_A 88 LNSTAG 93 (102)
T ss_dssp EECCCC
T ss_pred ECCCCC
Confidence 887554
No 266
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.3e-17 Score=119.39 Aligned_cols=81 Identities=16% Similarity=0.196 Sum_probs=72.3
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceE-EEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKG-CKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~-v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
..+.++|||+|||+++++++|+++|+.||.|.+ |++..+.+ ++|||||+|.+.++|++||+. ++..+.|+.|.|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~ 90 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFK 90 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEE
Confidence 456899999999999999999999999999987 87776643 679999999999999999997 99999999999999
Q ss_pred cCCCC
Q psy2618 81 ASSPG 85 (390)
Q Consensus 81 ~~~~~ 85 (390)
+....
T Consensus 91 ~~~~~ 95 (104)
T 1wg5_A 91 SSRAE 95 (104)
T ss_dssp ECTTT
T ss_pred CCHHH
Confidence 87643
No 267
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=3.7e-17 Score=126.44 Aligned_cols=79 Identities=15% Similarity=0.115 Sum_probs=72.2
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCC---ceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGP---VKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~---v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
+..+.++|||+|||+++++++|+++|+.||. |.+|++..++. ++|||||+|.+.++|++||+ +|+..+.|+.|+
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~ 118 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIE 118 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEE
Confidence 3456899999999999999999999999999 88999988764 56899999999999999999 999999999999
Q ss_pred EeecC
Q psy2618 78 VNWAS 82 (390)
Q Consensus 78 v~~~~ 82 (390)
|.++.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99774
No 268
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=7.7e-17 Score=126.84 Aligned_cols=79 Identities=28% Similarity=0.450 Sum_probs=72.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||.++++++|+++|+.||+|.+|++..++ .++|||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 138 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVN 138 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 35678999999999999999999999999999999998774 368999999999999999999999999999999998
Q ss_pred ec
Q psy2618 80 WA 81 (390)
Q Consensus 80 ~~ 81 (390)
++
T Consensus 139 ~A 140 (140)
T 2ku7_A 139 LA 140 (140)
T ss_dssp C-
T ss_pred eC
Confidence 75
No 269
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.69 E-value=1.7e-16 Score=115.47 Aligned_cols=80 Identities=15% Similarity=0.237 Sum_probs=69.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
....++|||+|||+++++++|+++|+.||.|.+| +.++....||||+|.+.++|++|++ |++..+.|+.|.|.++..
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~ 81 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQ 81 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCCEEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCc
Confidence 4567899999999999999999999999999988 3333322299999999999999999 999999999999998876
Q ss_pred CCC
Q psy2618 84 PGN 86 (390)
Q Consensus 84 ~~~ 86 (390)
...
T Consensus 82 ~~~ 84 (94)
T 2e5g_A 82 KEF 84 (94)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 270
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=8.9e-17 Score=119.09 Aligned_cols=79 Identities=19% Similarity=0.300 Sum_probs=70.4
Q ss_pred CCCCCCeEEE--eCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeee-----ccce
Q psy2618 3 DESQPTTLYV--GNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVF-----LEKE 75 (390)
Q Consensus 3 ~~~~~~~l~v--~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~-----~g~~ 75 (390)
...+.++||| +||++++++++|+++|+.||.|.+|.+.. .+|||||+|.+.++|++|++.|||..+ .++.
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~---~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~ 97 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 97 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCT---TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcE
Confidence 3467889999 66999999999999999999999998754 478999999999999999999999988 6889
Q ss_pred eeEeecCCC
Q psy2618 76 MKVNWASSP 84 (390)
Q Consensus 76 l~v~~~~~~ 84 (390)
|.|.++...
T Consensus 98 l~v~~a~~~ 106 (114)
T 2cq2_A 98 LYLNFVEKV 106 (114)
T ss_dssp CEEEEESCC
T ss_pred EEEEecccC
Confidence 999988753
No 271
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=6.5e-17 Score=117.51 Aligned_cols=80 Identities=18% Similarity=0.342 Sum_probs=70.4
Q ss_pred CCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcC-ceecCeEEEEEecccCCC
Q psy2618 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHN-TDINGHTVKCFWGKESEN 282 (390)
Q Consensus 204 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~-~~~~g~~i~v~~~~~~~~ 282 (390)
...++|||+|||.++++++|+++|++||.|+...++..+|+|||+|.+.++|.+|++.||+ ..++|+.|+|.+++++..
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEEETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEcCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 4557899999999999999999999999944444446799999999999999999999999 999999999999987654
Q ss_pred C
Q psy2618 283 N 283 (390)
Q Consensus 283 ~ 283 (390)
.
T Consensus 86 ~ 86 (93)
T 2cqh_A 86 R 86 (93)
T ss_dssp C
T ss_pred c
Confidence 3
No 272
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.5e-17 Score=120.04 Aligned_cols=81 Identities=21% Similarity=0.260 Sum_probs=71.9
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
...+.++|||+|||+++++++|+++|+.||. ++|+++.+++ ++|||||+|.+.++|++||+ +|+..+.++.|+|.+
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~-~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 88 (102)
T 1wez_A 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNP-MRVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRYVELFL 88 (102)
T ss_dssp CCSSSCEEEEESCCTTCCHHHHHHSSCSCCC-SEEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSCCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCc-eEEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3467889999999999999999999999995 4999988764 46899999999999999995 799999999999998
Q ss_pred cCCCC
Q psy2618 81 ASSPG 85 (390)
Q Consensus 81 ~~~~~ 85 (390)
+....
T Consensus 89 ~~~~~ 93 (102)
T 1wez_A 89 NSTAG 93 (102)
T ss_dssp ECCCC
T ss_pred CCCCC
Confidence 87643
No 273
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=1.8e-16 Score=117.76 Aligned_cols=80 Identities=13% Similarity=0.230 Sum_probs=73.5
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+|||+++++++|+++|+.| .|.+|.++.++. |+++|||||+|.+.++|.+|+ .+++..++||.|.|..
T Consensus 13 ~~~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~-g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 13 NPDDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHV-GRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSP 89 (109)
T ss_dssp CHHHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTT-CCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCC-CCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEE
Confidence 3446899999999999999999999999 899999999975 899999999999999999999 6899999999999988
Q ss_pred cCC
Q psy2618 172 STR 174 (390)
Q Consensus 172 ~~~ 174 (390)
+..
T Consensus 90 a~~ 92 (109)
T 2dnn_A 90 ATE 92 (109)
T ss_dssp CCH
T ss_pred CCc
Confidence 753
No 274
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.69 E-value=6.2e-17 Score=125.16 Aligned_cols=82 Identities=13% Similarity=0.192 Sum_probs=76.4
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCC---eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGE---ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
.....++|||+|||+++|+++|+++|+.||. |.+|.+++++. |+++|||||+|.+.++|++|++ +++..++|+.|
T Consensus 40 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~-g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i 117 (136)
T 2hgl_A 40 EGGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTRE-GRQSGEAFVELGSEDDVKMALK-KDRESMGHRYI 117 (136)
T ss_dssp SCCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSS-SCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEE
Confidence 4456789999999999999999999999999 89999999977 8999999999999999999998 99999999999
Q ss_pred EEeecCC
Q psy2618 168 RTNWSTR 174 (390)
Q Consensus 168 ~v~~~~~ 174 (390)
+|.++..
T Consensus 118 ~V~~a~~ 124 (136)
T 2hgl_A 118 EVFKSHR 124 (136)
T ss_dssp EEEECCH
T ss_pred EEEECCh
Confidence 9998853
No 275
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.69 E-value=7.8e-17 Score=119.77 Aligned_cols=84 Identities=24% Similarity=0.332 Sum_probs=76.1
Q ss_pred CCCCCceEEEEcCCCccc------CHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 90 QDTSNHYHIFVGDLSPEI------ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
......++|||+|||+.+ ++++|+++|+.||.|.++.++ +.+|+++|||||+|.+.++|.+|++.|++..+.
T Consensus 10 ~~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~--~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 10 EADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp SCCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECC--CBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEee--CCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 345557899999999999 789999999999999999887 467899999999999999999999999999999
Q ss_pred Ce-eEEEeecCCC
Q psy2618 164 SR-SIRTNWSTRK 175 (390)
Q Consensus 164 g~-~i~v~~~~~~ 175 (390)
|+ .|.|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998754
No 276
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.69 E-value=1e-17 Score=121.07 Aligned_cols=80 Identities=29% Similarity=0.520 Sum_probs=74.2
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
++|||+|||.++++++|+++|+.||.|.++.+++++.+|+++|||||+|.+.+ |.+|++.+++..+.|+.|.|+++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 68999999999999999999999999999999999999999999999999999 99999999999999999999999765
Q ss_pred C
Q psy2618 176 P 176 (390)
Q Consensus 176 ~ 176 (390)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 4
No 277
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.69 E-value=8e-17 Score=119.27 Aligned_cols=82 Identities=22% Similarity=0.371 Sum_probs=71.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+.++|||+|||.++++++|+++|+.|+ +|+++.++ .+++||||+|.+.++|++|++.|++..+.|+.|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 87 (102)
T 2fc8_A 11 RSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLD 87 (102)
T ss_dssp SSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456889999999999999999999999874 56666654 356899999999999999999999999999999999
Q ss_pred ecCCCCCC
Q psy2618 80 WASSPGNQ 87 (390)
Q Consensus 80 ~~~~~~~~ 87 (390)
++.++...
T Consensus 88 ~a~~~~~~ 95 (102)
T 2fc8_A 88 WAKPKGEG 95 (102)
T ss_dssp ECCCCCSS
T ss_pred EecCCCCC
Confidence 99876543
No 278
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.69 E-value=1.6e-16 Score=125.03 Aligned_cols=83 Identities=36% Similarity=0.587 Sum_probs=77.9
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||.++++++|+++|+.||.|..+.+++++.+++++|||||+|.+.++|.+|++.|++..+.|+.|+|
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 137 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRV 137 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEEEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEEEEE
Confidence 34556899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eec
Q psy2618 170 NWS 172 (390)
Q Consensus 170 ~~~ 172 (390)
.++
T Consensus 138 ~~A 140 (140)
T 2ku7_A 138 NLA 140 (140)
T ss_dssp EC-
T ss_pred EeC
Confidence 875
No 279
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.69 E-value=1.1e-16 Score=120.14 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=73.1
Q ss_pred cceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 206 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
.++|||+|||..+++++|+++|++||.|.++.+++.+++|||+|.+.++|.+|++.||+..++|+.|.|.|++....
T Consensus 10 ~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 86 (111)
T 1whx_A 10 KTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVF 86 (111)
T ss_dssp EEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETTTT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCCcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999987543
No 280
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.69 E-value=1.1e-16 Score=121.38 Aligned_cols=83 Identities=14% Similarity=0.216 Sum_probs=76.5
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCC---eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGE---ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
.....++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|++|++ +++..++|+.|
T Consensus 13 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 90 (118)
T 2db1_A 13 EGGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTRE-GRQSGEAFVELESEDDVKLALK-KDRESMGHRYI 90 (118)
T ss_dssp CBCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSS-SCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCC-CCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEE
Confidence 3456789999999999999999999999999 89999999976 8999999999999999999998 89999999999
Q ss_pred EEeecCCC
Q psy2618 168 RTNWSTRK 175 (390)
Q Consensus 168 ~v~~~~~~ 175 (390)
+|.++..+
T Consensus 91 ~V~~a~~~ 98 (118)
T 2db1_A 91 EVFKSHRT 98 (118)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99988643
No 281
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3.5e-16 Score=115.50 Aligned_cols=83 Identities=27% Similarity=0.386 Sum_probs=74.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+++++++|+++|+.||.| .++.+ .+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~-~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQN-QNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBC-SSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEEC-CCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEE
Confidence 45568999999999999999999999999977 55665 678899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 171 WSTRKPP 177 (390)
Q Consensus 171 ~~~~~~~ 177 (390)
++..+..
T Consensus 87 ~a~~~~~ 93 (101)
T 2fc9_A 87 LQGPRGS 93 (101)
T ss_dssp ECSSCCC
T ss_pred EcCCCCC
Confidence 9987643
No 282
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=1.4e-16 Score=120.83 Aligned_cols=81 Identities=25% Similarity=0.423 Sum_probs=74.1
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+.++|||+|||+++++++|+++|+.||.|.+|++..++. ++|||||+|.+.++|.+||+. ++..+.|+.|.|.++.
T Consensus 26 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~ 104 (116)
T 1x4b_A 26 QFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAV 104 (116)
T ss_dssp HHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECC
Confidence 458999999999999999999999999999999998743 678999999999999999987 9999999999999998
Q ss_pred CCCCC
Q psy2618 83 SPGNQ 87 (390)
Q Consensus 83 ~~~~~ 87 (390)
+....
T Consensus 105 ~~~~~ 109 (116)
T 1x4b_A 105 AREES 109 (116)
T ss_dssp SCCCC
T ss_pred CCccC
Confidence 76543
No 283
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.68 E-value=8.6e-17 Score=123.64 Aligned_cols=83 Identities=24% Similarity=0.450 Sum_probs=78.2
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
..++|||+|||.++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|+ .+++..+.|+.|.|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 3689999999999999999999999999999999999889999999999999999999999 899999999999999987
Q ss_pred CCCC
Q psy2618 174 RKPP 177 (390)
Q Consensus 174 ~~~~ 177 (390)
....
T Consensus 114 ~~~~ 117 (124)
T 2jwn_A 114 TNMP 117 (124)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 6543
No 284
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=2.7e-16 Score=118.92 Aligned_cols=84 Identities=21% Similarity=0.495 Sum_probs=77.1
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCcee--------
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL-------- 162 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~-------- 162 (390)
.....++|||+|||+++++++|+++|+.||.|..+.++.++ +++++|||||+|.+.++|.+|++.|++..+
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~-~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~ 99 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDS-SGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSA 99 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECS-SSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECC-CCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccC
Confidence 44567899999999999999999999999999999999998 889999999999999999999999999999
Q ss_pred CCeeEEEeecCCC
Q psy2618 163 GSRSIRTNWSTRK 175 (390)
Q Consensus 163 ~g~~i~v~~~~~~ 175 (390)
.++.|.|.|+.+.
T Consensus 100 ~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 100 PTEPLLCKFSGPS 112 (114)
T ss_dssp CSSCBEEEECCCS
T ss_pred CCCceeEEccCCC
Confidence 5778999988743
No 285
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.68 E-value=1.4e-17 Score=120.38 Aligned_cols=77 Identities=30% Similarity=0.476 Sum_probs=69.3
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
++|||+|||.++++++|+++|+.||+|.+|++..++ .++|||||+|.+.+ |.+|++.||+..+.|+.|+|.++...
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~ 80 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPK 80 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC---
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCC
Confidence 689999999999999999999999999999998774 36789999999999 99999999999999999999999764
Q ss_pred C
Q psy2618 85 G 85 (390)
Q Consensus 85 ~ 85 (390)
.
T Consensus 81 ~ 81 (90)
T 2ki2_A 81 K 81 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 286
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.68 E-value=2.1e-17 Score=128.16 Aligned_cols=123 Identities=15% Similarity=0.109 Sum_probs=74.2
Q ss_pred CeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEE
Q psy2618 47 PYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCR 126 (390)
Q Consensus 47 g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~ 126 (390)
++|+.+|.-++.+..++...... ..+...--. .............++|||+|||+++++++|+++|+.|| |.+|.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~-~gg~~~g~~---~g~~~~~~~~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~ 76 (139)
T 2hgn_A 2 GSSHHHHHHSSGLVPRGSHMASM-TGGQQMGRG---SGDSEFTVQSTTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVH 76 (139)
T ss_dssp -----------------------------------------------CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEE
T ss_pred CcccccccCccccchhcccchhc-cCCCCCCCC---CCCcccCCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEE
Confidence 46788888888877777654332 223222100 11111123345578999999999999999999999999 67999
Q ss_pred EeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCCC
Q psy2618 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176 (390)
Q Consensus 127 ~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 176 (390)
+++++. |+++|||||+|.+.++|++|+ .+++..+.++.|.|.++....
T Consensus 77 i~~d~~-g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~ 124 (139)
T 2hgn_A 77 IEIGPD-GRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTG 124 (139)
T ss_dssp CCCSSS-SCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSC
T ss_pred EEECCC-CCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCC
Confidence 999976 899999999999999999999 789999999999999887654
No 287
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.68 E-value=1.4e-16 Score=128.81 Aligned_cols=137 Identities=19% Similarity=0.287 Sum_probs=74.1
Q ss_pred EEecCHHHHHHHHHHhcCceeC--CeeEEEeecCCCCCCCcccccccCCCCccccccccccCCCCCcceeEEcCCCCCCc
Q psy2618 142 VSFVKKAEAENAITAMNGQWLG--SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLN 219 (390)
Q Consensus 142 v~f~~~~~a~~a~~~l~~~~~~--g~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~~~~~ 219 (390)
.+|.+.++|..++..+++.... |+.....++.......... ...................++|||+|||..++
T Consensus 11 ee~e~~~d~e~~~~~~~~~~~~~kgr~~~~~~~~~~~~~~~~~-----~~~s~~~~~~~~~~~~~~~~~l~V~nLp~~~t 85 (165)
T 1rk8_A 11 EEFEVDEDGDQGIVRLKEKAKHRKGRGFGSDSNTREAIHSYER-----VRNEDDDELEPGPQRSVEGWILFVTSIHEEAQ 85 (165)
T ss_dssp ------------------------------------------------------------CCCCC-CEEEEEESCCTTCC
T ss_pred hhhhccccccccchhhccccccccCCCCCCCccccccccCccc-----cccCCCCCCCCCCCCCCCCCEEEEeCCCCCCC
Confidence 6789999999999888876543 4444444322111000000 00000000011122344567899999999999
Q ss_pred HHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCC
Q psy2618 220 EELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283 (390)
Q Consensus 220 ~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 283 (390)
+++|+.+|+.||.|..|.++++ +|+|||+|.+.++|.+|+..||+..|.|+.|.|.|+......
T Consensus 86 ~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 155 (165)
T 1rk8_A 86 EDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPK 155 (165)
T ss_dssp HHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC--
T ss_pred HHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCC
Confidence 9999999999999999999976 689999999999999999999999999999999999876543
No 288
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.68 E-value=3e-16 Score=113.18 Aligned_cols=78 Identities=18% Similarity=0.409 Sum_probs=71.8
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
....++|||+|||..+++++|+++|++||.|.++.+++ ++|||+|.+.++|.+|++.|++..++|+.|.|.++++...
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~--~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 83 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK--DYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQK 83 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS--SCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC--CEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCCC
Confidence 34567899999999999999999999999999999974 5999999999999999999999999999999999987743
No 289
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=5.2e-16 Score=113.61 Aligned_cols=78 Identities=26% Similarity=0.264 Sum_probs=71.1
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
..+.++|||+|| ++++++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|++..+.|+.|+|.++..
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~ 86 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 86 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEec---CCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCC
Confidence 457789999996 89999999999999999999884 4678999999999999999999999999999999999987
Q ss_pred CCC
Q psy2618 84 PGN 86 (390)
Q Consensus 84 ~~~ 86 (390)
...
T Consensus 87 ~~~ 89 (97)
T 1x5p_A 87 QPM 89 (97)
T ss_dssp CCC
T ss_pred CCC
Confidence 544
No 290
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.68 E-value=1.1e-16 Score=119.13 Aligned_cols=80 Identities=16% Similarity=0.178 Sum_probs=71.8
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCC-CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFG-EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G-~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
...++|||+|||+++++++|+++|+.|| .|..+.+..+ +++|||||+|.+.++|++|++.|++..+.|+.|.|.+
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~----~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~ 101 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTR----DFDGTGALEFPSEEILVEALERLNNIEFRGSVITVER 101 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSC----SSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcC----CCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEE
Confidence 3568999999999999999999999999 8999888543 4799999999999999999999999999999999999
Q ss_pred cCCCC
Q psy2618 172 STRKP 176 (390)
Q Consensus 172 ~~~~~ 176 (390)
+...+
T Consensus 102 a~~~p 106 (111)
T 2jvr_A 102 DDNPP 106 (111)
T ss_dssp SCC--
T ss_pred CCCCC
Confidence 87543
No 291
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.68 E-value=8.1e-16 Score=112.58 Aligned_cols=79 Identities=25% Similarity=0.444 Sum_probs=72.6
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
....++|||+|+ .+++++|+++|++||.|.++.+.+.+|+|||+|.+.++|.+|++.|++..++|+.|.|.++++...
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~~ 89 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 89 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCCC
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCCC
Confidence 345678999996 899999999999999999999999999999999999999999999999999999999999987654
Q ss_pred C
Q psy2618 283 N 283 (390)
Q Consensus 283 ~ 283 (390)
.
T Consensus 90 ~ 90 (97)
T 1x5p_A 90 L 90 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 292
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.68 E-value=2.4e-16 Score=117.49 Aligned_cols=79 Identities=25% Similarity=0.601 Sum_probs=72.6
Q ss_pred CCCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 202 ~~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
.....++|||+||+..+++++|+++|++||.|+++.+. +|+|||+|.+.++|.+|++.|++..++|+.|.|.+++...
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~--kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 104 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL--NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPA 104 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE--TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE--CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCC
Confidence 34566789999999999999999999999999999998 8999999999999999999999999999999999998764
Q ss_pred C
Q psy2618 282 N 282 (390)
Q Consensus 282 ~ 282 (390)
.
T Consensus 105 ~ 105 (108)
T 2jvo_A 105 K 105 (108)
T ss_dssp -
T ss_pred C
Confidence 3
No 293
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.5e-17 Score=121.71 Aligned_cols=82 Identities=16% Similarity=0.279 Sum_probs=71.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeec---CCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~---~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..+.++|||+|||.++++++|+++|+.||.|.+ .++.+ ..++|||||+|.+.++|++|++ |++..+.|+.|+|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 4557889999999999999999999999999877 33333 3478999999999999999998 99999999999999
Q ss_pred ecCCCCC
Q psy2618 80 WASSPGN 86 (390)
Q Consensus 80 ~~~~~~~ 86 (390)
++..+..
T Consensus 91 ~a~~~~~ 97 (101)
T 1fj7_A 91 KPKGRDG 97 (101)
T ss_dssp CCSCCCC
T ss_pred EcCCCCC
Confidence 9987543
No 294
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=7.4e-17 Score=120.33 Aligned_cols=83 Identities=11% Similarity=0.183 Sum_probs=76.9
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCC---eeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCee
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE---ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS 166 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~---i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 166 (390)
......++|||+|||+++++++|+++|+.||. |..+.++.++. |+++|||||+|.+.++|.+|++ +++..++|+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~-g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRD-GKRRGDALIEMESEQDVQKALE-KHRMYMGQRY 83 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTT-STTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSC
T ss_pred CCCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCC-CCEeeEEEEEECCHHHHHHHHH-hCcceeCCeE
Confidence 44567889999999999999999999999998 89999999977 8999999999999999999998 8999999999
Q ss_pred EEEeecCC
Q psy2618 167 IRTNWSTR 174 (390)
Q Consensus 167 i~v~~~~~ 174 (390)
|.|.++..
T Consensus 84 i~V~~a~~ 91 (107)
T 2lmi_A 84 VEVYEINN 91 (107)
T ss_dssp CCCEECCH
T ss_pred EEEEECCH
Confidence 99998864
No 295
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.67 E-value=1.4e-16 Score=125.61 Aligned_cols=83 Identities=27% Similarity=0.316 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceE--------EEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccce
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKG--------CKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKE 75 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~--------v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~ 75 (390)
..+.++|||+|||+++++++|+++|+.||.|.+ +++.....++|||||+|.+.++|.+|++.||+..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 457899999999999999999999999999876 555556668899999999999999999999999999999
Q ss_pred eeEeecCCCCC
Q psy2618 76 MKVNWASSPGN 86 (390)
Q Consensus 76 l~v~~~~~~~~ 86 (390)
|.|.++.....
T Consensus 122 l~V~~a~~~~~ 132 (143)
T 3egn_A 122 MVVQFARSARP 132 (143)
T ss_dssp CEEEECCCSCC
T ss_pred EEEEECCCCCC
Confidence 99999976543
No 296
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.67 E-value=4.1e-16 Score=113.95 Aligned_cols=77 Identities=19% Similarity=0.395 Sum_probs=71.1
Q ss_pred CCCCcceeEEcCCCC-CCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 202 SSPTNCTVYCGGFGK-DLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 202 ~~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
..+.+++|||+||+. .+++++|+++|+.||.|.++.+. +|+|||+|.+.++|.+|++.|++..++|+.|.|.+++..
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC--SSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred CCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 345678899999998 99999999999999999999984 899999999999999999999999999999999998765
No 297
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=4.8e-16 Score=115.02 Aligned_cols=86 Identities=30% Similarity=0.451 Sum_probs=77.6
Q ss_pred CCCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 89 ~~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.......++|||+|||.++++++|+++|+.|+ .+.++.++.+++++|||||+|.+.++|.+|++.|++..+.|+.|.
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 9 NARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 34556779999999999999999999999773 678888888899999999999999999999999999999999999
Q ss_pred EeecCCCCC
Q psy2618 169 TNWSTRKPP 177 (390)
Q Consensus 169 v~~~~~~~~ 177 (390)
|.++.++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987654
No 298
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.67 E-value=1.7e-16 Score=121.97 Aligned_cols=79 Identities=28% Similarity=0.434 Sum_probs=72.6
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
+.++|||+|||.++++++|+++|+.||.|.+|++..++ .++|||||+|.+.++|++|+ .|++..+.|+.|+|.++.
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~ 113 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKR 113 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESS
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECC
Confidence 46899999999999999999999999999999998874 35789999999999999999 799999999999999998
Q ss_pred CCC
Q psy2618 83 SPG 85 (390)
Q Consensus 83 ~~~ 85 (390)
...
T Consensus 114 ~~~ 116 (124)
T 2jwn_A 114 TNM 116 (124)
T ss_dssp CCC
T ss_pred CCC
Confidence 643
No 299
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=5.7e-17 Score=124.48 Aligned_cols=84 Identities=20% Similarity=0.325 Sum_probs=76.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+++++++|+++|+.||.|..+.++.+..+|+++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~ 99 (124)
T 1wel_A 21 PHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVH 99 (124)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEE
Confidence 34556899999999999999999999999999987777777899999999999999999999998 99999999999999
Q ss_pred ecCCC
Q psy2618 171 WSTRK 175 (390)
Q Consensus 171 ~~~~~ 175 (390)
++..+
T Consensus 100 ~a~~~ 104 (124)
T 1wel_A 100 PITKK 104 (124)
T ss_dssp EECHH
T ss_pred ECCHH
Confidence 98653
No 300
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.67 E-value=4e-16 Score=117.95 Aligned_cols=75 Identities=21% Similarity=0.278 Sum_probs=67.5
Q ss_pred eEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCe-EEEEEccHHHHHHHHHHhcCeeecc--ceeeEeecCCCC
Q psy2618 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPY-AFLEFVHHTVAATALAAMNKRVFLE--KEMKVNWASSPG 85 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~-afV~F~~~~~A~~a~~~l~~~~~~g--~~l~v~~~~~~~ 85 (390)
.|+|+||++.+++++|+++|+.||.|.+|++... .|| |||+|.+.++|.+|++.|||..|.| +.|+|.+++...
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~ 103 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTR 103 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCc
Confidence 3579999999999999999999999999998753 386 9999999999999999999999987 689999998765
Q ss_pred C
Q psy2618 86 N 86 (390)
Q Consensus 86 ~ 86 (390)
.
T Consensus 104 l 104 (124)
T 2e5i_A 104 L 104 (124)
T ss_dssp C
T ss_pred c
Confidence 3
No 301
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1.2e-16 Score=118.77 Aligned_cols=76 Identities=16% Similarity=0.255 Sum_probs=68.9
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
+.++|||+|||+++++++|+++|+.| .|.+|++..++. ++|||||+|.+.++|++|| .+|+..+.|+.|.|..+..
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~ 92 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATE 92 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCc
Confidence 45799999999999999999999999 899999987654 6799999999999999999 5899999999999987753
No 302
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.67 E-value=9.9e-16 Score=112.59 Aligned_cols=78 Identities=21% Similarity=0.453 Sum_probs=71.7
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCC--CceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPF--GTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~--g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
....++|||+|||..+++++|+++|+.| |.|.++.+. +++|||+|.+.++|.+|+..||+..++|+.|.|.++++.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI--RDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPV 89 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC--SSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCC
T ss_pred cCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe--CCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 3456789999999999999999999999 999988875 789999999999999999999999999999999999876
Q ss_pred CC
Q psy2618 281 EN 282 (390)
Q Consensus 281 ~~ 282 (390)
..
T Consensus 90 ~~ 91 (99)
T 2cpd_A 90 DK 91 (99)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 303
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=2.7e-16 Score=114.96 Aligned_cols=79 Identities=20% Similarity=0.267 Sum_probs=71.4
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEE-EeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCK-VIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~-~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
...++|||+|||+++++++|+++|+.||.|.+|+ +..++. .+.|||+|.+.++|.+|++.||+..+.|++|+|.++.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~-~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~ 91 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSE-TAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPD 91 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSS-SEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCC-CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCc
Confidence 4578999999999999999999999999999995 666544 34599999999999999999999999999999999987
Q ss_pred C
Q psy2618 84 P 84 (390)
Q Consensus 84 ~ 84 (390)
.
T Consensus 92 ~ 92 (96)
T 2e44_A 92 E 92 (96)
T ss_dssp C
T ss_pred c
Confidence 5
No 304
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.67 E-value=6.6e-17 Score=120.58 Aligned_cols=80 Identities=15% Similarity=0.100 Sum_probs=72.7
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCC---ceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGP---VKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~---v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
+..+.++|||+|||+++++++|+++|+.||. |.+|++..++. ++|||||+|.+.++|++||+ +++..+.|+.|+
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~ 85 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVE 85 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEE
Confidence 4567889999999999999999999999988 89999987754 67899999999999999999 899999999999
Q ss_pred EeecCC
Q psy2618 78 VNWASS 83 (390)
Q Consensus 78 v~~~~~ 83 (390)
|.++..
T Consensus 86 V~~a~~ 91 (107)
T 2lmi_A 86 VYEINN 91 (107)
T ss_dssp CEECCH
T ss_pred EEECCH
Confidence 998754
No 305
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.66 E-value=2.4e-16 Score=120.42 Aligned_cols=82 Identities=16% Similarity=0.304 Sum_probs=73.6
Q ss_pred CCCceEEEEcCCCcccCHHHHH----HHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLK----EAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
..+.++|||+|||+.+++++|+ ++|++||.|.+|.+.+ +++++|||||+|.+.++|..|++.|++..+.|+.|
T Consensus 26 ~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~---~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 26 TEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDL---SDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECC---CCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEecc---CCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 4457899999999999999876 6999999999987753 56889999999999999999999999999999999
Q ss_pred EEeecCCCC
Q psy2618 168 RTNWSTRKP 176 (390)
Q Consensus 168 ~v~~~~~~~ 176 (390)
.|.|+..+.
T Consensus 103 ~V~~a~~~~ 111 (127)
T 2a3j_A 103 VITFSETPQ 111 (127)
T ss_dssp EEEECCCCC
T ss_pred EEEEccCcc
Confidence 999997653
No 306
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.66 E-value=2e-16 Score=119.52 Aligned_cols=76 Identities=20% Similarity=0.207 Sum_probs=66.5
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccce-----eeEe
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKE-----MKVN 79 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~-----l~v~ 79 (390)
+..++|||+|||+++++++|+++|+.||+|.+|++..+ |||||+|.+.++|++||+.||+..|.|+. |+|.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~ 89 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVK 89 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEE
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEec
Confidence 35689999999999999999999999999999999765 79999999999999999999999999988 7777
Q ss_pred ecCCC
Q psy2618 80 WASSP 84 (390)
Q Consensus 80 ~~~~~ 84 (390)
.+...
T Consensus 90 ~~~~~ 94 (115)
T 3beg_B 90 VDGPR 94 (115)
T ss_dssp ECC--
T ss_pred cCCCC
Confidence 66553
No 307
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.66 E-value=3.3e-17 Score=121.05 Aligned_cols=84 Identities=19% Similarity=0.366 Sum_probs=76.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+++++++|+++|+.||.|.. .++.+..+++++|||||+|.+.++|.+|++ +++..+.|+.|.|.
T Consensus 13 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~ 90 (101)
T 1fj7_A 13 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLE 90 (101)
T ss_dssp TCSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEE
Confidence 3456789999999999999999999999999888 677777788999999999999999999998 99999999999999
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
++..+.
T Consensus 91 ~a~~~~ 96 (101)
T 1fj7_A 91 KPKGRD 96 (101)
T ss_dssp CCSCCC
T ss_pred EcCCCC
Confidence 997654
No 308
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.66 E-value=6.9e-17 Score=114.02 Aligned_cols=73 Identities=25% Similarity=0.389 Sum_probs=67.3
Q ss_pred ceEEEEcCCCccc------CHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCe-eE
Q psy2618 95 HYHIFVGDLSPEI------ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSR-SI 167 (390)
Q Consensus 95 ~~~l~v~nl~~~~------~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~-~i 167 (390)
+++|||+|||..+ ++++|+++|++||.|.++.+. +.+|+++|||||+|.+.++|.+|++.|++..+.|+ .|
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~--~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l 78 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYP--EEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTF 78 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECC--CBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCC
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEec--CCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeE
Confidence 3789999999999 679999999999999999887 46788999999999999999999999999999999 88
Q ss_pred EE
Q psy2618 168 RT 169 (390)
Q Consensus 168 ~v 169 (390)
+|
T Consensus 79 ~V 80 (81)
T 2krb_A 79 RV 80 (81)
T ss_dssp CC
T ss_pred Ee
Confidence 76
No 309
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.66 E-value=6.9e-16 Score=110.70 Aligned_cols=77 Identities=18% Similarity=0.216 Sum_probs=71.9
Q ss_pred CcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 205 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
..++|||+|||..+++++|+++|++| .|.++.+.+.+|+|||+|.+.++|.+|++.||+..++|+.|+|.++.....
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 80 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTDAL 80 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEEGGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEeCCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCCce
Confidence 34679999999999999999999999 999999988899999999999999999999999999999999999877653
No 310
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.66 E-value=5.1e-16 Score=113.63 Aligned_cols=82 Identities=21% Similarity=0.451 Sum_probs=73.5
Q ss_pred CCCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 90 ~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
......++|||+|||+++++++|+++|+.||.|. +.++.+ +++|||||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 14 ~~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~----~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V 88 (97)
T 2e5j_A 14 EGAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQ----GPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRV 88 (97)
T ss_dssp SSSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEE----TTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEE
T ss_pred CCCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcC----CCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 3455678999999999999999999999999996 666653 68999999999999999999999999999999999
Q ss_pred eecCCCC
Q psy2618 170 NWSTRKP 176 (390)
Q Consensus 170 ~~~~~~~ 176 (390)
.++.++.
T Consensus 89 ~~a~~~~ 95 (97)
T 2e5j_A 89 ALARQQR 95 (97)
T ss_dssp EECCCCC
T ss_pred EEcCCCC
Confidence 9997654
No 311
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.66 E-value=5.1e-17 Score=113.00 Aligned_cols=75 Identities=25% Similarity=0.512 Sum_probs=71.2
Q ss_pred EEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeec
Q psy2618 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172 (390)
Q Consensus 97 ~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~ 172 (390)
+|||+|||+++++++|+++|+.||.|.++.+++++.+++++|||||+|.+.++|.+|++. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 589999999999999999999999999999999999999999999999999999999975 889999999999875
No 312
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.66 E-value=2.7e-16 Score=114.83 Aligned_cols=79 Identities=19% Similarity=0.401 Sum_probs=71.4
Q ss_pred CCCcceeEEcCCCC-CCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 203 SPTNCTVYCGGFGK-DLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 203 ~~~~~~l~v~~l~~-~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
.++.++|||+|||. .+++++|+++|++||.|.++.+. +|+|||+|.+.++|.+|++.|++..+.|+.|.|.+++...
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~--~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 84 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK--NAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNA 84 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE--TTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCC
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe--CCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCC
Confidence 34567899999998 99999999999999999999995 8999999999999999999999999999999999998765
Q ss_pred CC
Q psy2618 282 NN 283 (390)
Q Consensus 282 ~~ 283 (390)
..
T Consensus 85 ~~ 86 (96)
T 2kvi_A 85 RP 86 (96)
T ss_dssp C-
T ss_pred CC
Confidence 43
No 313
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.5e-17 Score=123.82 Aligned_cols=79 Identities=15% Similarity=0.185 Sum_probs=69.2
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
..+.++|||+|||+++++++|+++|+.||.|.++.++.+. .++|||||+|.+.++|++||+ ||+..+.|+.|.|.+
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~ 100 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHP 100 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEE
Confidence 3466899999999999999999999999999874444433 256899999999999999999 999999999999998
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
+..
T Consensus 101 a~~ 103 (124)
T 1wel_A 101 ITK 103 (124)
T ss_dssp ECH
T ss_pred CCH
Confidence 854
No 314
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=1.1e-16 Score=121.32 Aligned_cols=87 Identities=24% Similarity=0.306 Sum_probs=75.2
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||.++++++|+++|+.||.|..+.+..+..+++++|||||+|.+.++|.+|++.|++..+.|+.|.|.
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 100 (115)
T 2cpx_A 21 PGEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIE 100 (115)
T ss_dssp CCSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEE
Confidence 34567899999999999999999999999998544333333377899999999999999999999999999999999999
Q ss_pred ecCCCCC
Q psy2618 171 WSTRKPP 177 (390)
Q Consensus 171 ~~~~~~~ 177 (390)
++.....
T Consensus 101 ~a~~~~~ 107 (115)
T 2cpx_A 101 FGKNKKQ 107 (115)
T ss_dssp ECCCCSC
T ss_pred EccCCCC
Confidence 9987654
No 315
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.65 E-value=4.9e-16 Score=111.45 Aligned_cols=76 Identities=20% Similarity=0.298 Sum_probs=62.5
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCee--eccceeeEee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRV--FLEKEMKVNW 80 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~--~~g~~l~v~~ 80 (390)
...+.++|||+|||+++++++|+++|+.||.|.+|++..+ ++|||||+|.+.++|++ +++.. +.|+.|.|.+
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~ 80 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISN 80 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEE
Confidence 3467899999999999999999999999999999998874 78999999999999984 35555 4589999999
Q ss_pred cCCC
Q psy2618 81 ASSP 84 (390)
Q Consensus 81 ~~~~ 84 (390)
+.++
T Consensus 81 a~~k 84 (89)
T 3d2w_A 81 AEPK 84 (89)
T ss_dssp CC--
T ss_pred cCCC
Confidence 8764
No 316
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.65 E-value=6.4e-16 Score=113.22 Aligned_cols=79 Identities=27% Similarity=0.486 Sum_probs=72.7
Q ss_pred CCCcceeEEcCCCCCCcHHHHH----hhhcCCCceeEEEEec---CCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEE
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVS----KVFSPFGTIVDIRVFK---EKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~----~~f~~~g~v~~~~~~~---~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 275 (390)
.+++++|||+|||..+++++|+ ++|++||.|.++.+.+ .+|+|||+|.+.++|.+|++.|++..++|+.|.|.
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~ 84 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQ 84 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3456789999999999999999 9999999999999983 48999999999999999999999999999999999
Q ss_pred ecccCC
Q psy2618 276 WGKESE 281 (390)
Q Consensus 276 ~~~~~~ 281 (390)
++++..
T Consensus 85 ~a~~~~ 90 (97)
T 1nu4_A 85 YAKTDS 90 (97)
T ss_dssp ECSSCC
T ss_pred EccCCC
Confidence 998764
No 317
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.65 E-value=2.3e-16 Score=116.99 Aligned_cols=79 Identities=18% Similarity=0.278 Sum_probs=71.6
Q ss_pred eEEEEcCC----CcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecC----HHH----HHHHHH--HhcCce
Q psy2618 96 YHIFVGDL----SPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK----KAE----AENAIT--AMNGQW 161 (390)
Q Consensus 96 ~~l~v~nl----~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~----~~~----a~~a~~--~l~~~~ 161 (390)
..|+|+|| |+.+++++|+++|+.||+|.++.++.|+.||+++|||||+|.+ +++ |.+|+. .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 67999999 9999999999999999999999999999999999999999996 433 888988 789999
Q ss_pred eCCeeEEEeecCC
Q psy2618 162 LGSRSIRTNWSTR 174 (390)
Q Consensus 162 ~~g~~i~v~~~~~ 174 (390)
++|+.|+|.+-..
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999997653
No 318
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.65 E-value=1.9e-16 Score=134.59 Aligned_cols=81 Identities=17% Similarity=0.283 Sum_probs=76.5
Q ss_pred CceEEEEcCCCcccCHHHHHHHhCCCC--CeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 94 NHYHIFVGDLSPEIETQTLKEAFAPFG--EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 94 ~~~~l~v~nl~~~~~~~~l~~~f~~~G--~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
..++|||+||++++++++|+++|+.|| .|.+|.|++++.+++++|||||+|.+.++|.+||+.|++..|.|+.|.|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 567899999999999999999999999 999999999999999999999999999999999999999999999999999
Q ss_pred cCC
Q psy2618 172 STR 174 (390)
Q Consensus 172 ~~~ 174 (390)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 863
No 319
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.65 E-value=1.3e-15 Score=115.44 Aligned_cols=79 Identities=20% Similarity=0.359 Sum_probs=71.5
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-CCe-EEEEecCHHHHHHHHHHhcCceecC--eEEEEEecccCCC
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-KGY-AFVKFTTKETATHAIESIHNTDING--HTVKCFWGKESEN 282 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~~ 282 (390)
..|||+||++.+++++|+++|++||.|.+|.+.++ +|+ |||+|.+.++|.+|++.|||..+.| +.|+|.|++....
T Consensus 29 L~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~~l 108 (130)
T 3zzy_A 29 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTSL 108 (130)
T ss_dssp EEEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCSSC
T ss_pred EEEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCCce
Confidence 45889999999999999999999999999988755 677 9999999999999999999999988 9999999998865
Q ss_pred CCC
Q psy2618 283 NST 285 (390)
Q Consensus 283 ~~~ 285 (390)
...
T Consensus 109 ~v~ 111 (130)
T 3zzy_A 109 NVK 111 (130)
T ss_dssp CCC
T ss_pred eEE
Confidence 433
No 320
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.65 E-value=9.5e-17 Score=111.60 Aligned_cols=72 Identities=15% Similarity=0.274 Sum_probs=66.2
Q ss_pred eEEEeCCChhccHHHHHHHhcccCCceEEEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 9 ~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+|||+|||+++++++|+++|+.||+|.+|++..++ .++|||||+|.+.++|++|++. ++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 69999999999999999999999999999988764 3689999999999999999984 888999999999875
No 321
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.46 E-value=1.1e-17 Score=126.91 Aligned_cols=84 Identities=25% Similarity=0.336 Sum_probs=76.6
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceE--------EEEeecC---CCCCeEEEEEccHHHHHHHHHHhcCeee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKG--------CKVIREP---GNDPYAFLEFVHHTVAATALAAMNKRVF 71 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~--------v~~~~~~---~~~g~afV~F~~~~~A~~a~~~l~~~~~ 71 (390)
++.+.++|||+|||.++++++|+++|+.||.|.+ |++..++ .++|||||+|.+.++|.+|++.||+..+
T Consensus 3 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 82 (116)
T 2lcw_A 3 DNSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEF 82 (116)
Confidence 5678999999999999999999999999999998 8887764 3678999999999999999999999999
Q ss_pred ccceeeEeecCCCCC
Q psy2618 72 LEKEMKVNWASSPGN 86 (390)
Q Consensus 72 ~g~~l~v~~~~~~~~ 86 (390)
.|+.|+|.++.....
T Consensus 83 ~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 83 SGNPIKVSFATRRAD 97 (116)
Confidence 999999999987544
No 322
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.64 E-value=8.9e-16 Score=115.17 Aligned_cols=76 Identities=25% Similarity=0.469 Sum_probs=71.0
Q ss_pred CcceeEEcCCCCC-CcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 205 TNCTVYCGGFGKD-LNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 205 ~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
..++|||+||+.. +++++|+++|++||.|+++.+ .+++|||+|.+.++|.+|++.|++..++|+.|+|.+++....
T Consensus 26 ~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i--~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 102 (110)
T 1wf1_A 26 INSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV--HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEPKP 102 (110)
T ss_dssp CSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE--ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCCCS
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE--eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCCC
Confidence 4578999999999 999999999999999999999 789999999999999999999999999999999999986543
No 323
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.64 E-value=1.5e-15 Score=114.86 Aligned_cols=76 Identities=22% Similarity=0.323 Sum_probs=70.0
Q ss_pred eeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCe-EEEEecCHHHHHHHHHHhcCceecC--eEEEEEecccCCCC
Q psy2618 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGY-AFVKFTTKETATHAIESIHNTDING--HTVKCFWGKESENN 283 (390)
Q Consensus 208 ~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~-~fv~f~~~~~a~~a~~~l~~~~~~g--~~i~v~~~~~~~~~ 283 (390)
.|||+||++.+++++|+++|++||.|++|.+.+.+|+ |||+|.+.++|.+|++.|||..|.| +.|+|.|+++....
T Consensus 27 ~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 27 LLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKRNGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPTRLN 105 (124)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEESSSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCSCCC
T ss_pred EEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCCcce
Confidence 4689999999999999999999999999999876796 9999999999999999999999987 69999999887643
No 324
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.64 E-value=4.4e-16 Score=126.75 Aligned_cols=79 Identities=22% Similarity=0.252 Sum_probs=73.8
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWAS 82 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~ 82 (390)
.+.++|||+|||+++++++|+++|+.||+|.+|.+..+.. ++|||||+|.+.++|.+|++.|++..+.|+.|+|.++.
T Consensus 86 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~~a~ 165 (177)
T 2f3j_A 86 ETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVA 165 (177)
T ss_dssp TTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEec
Confidence 4578999999999999999999999999999999988753 67899999999999999999999999999999999997
Q ss_pred C
Q psy2618 83 S 83 (390)
Q Consensus 83 ~ 83 (390)
.
T Consensus 166 ~ 166 (177)
T 2f3j_A 166 S 166 (177)
T ss_dssp S
T ss_pred C
Confidence 5
No 325
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.64 E-value=1.1e-16 Score=124.20 Aligned_cols=79 Identities=16% Similarity=0.195 Sum_probs=70.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
....++|||+|||+++++++|+++|+.|| |++|+++.++. ++|||||+|.+.++|++|| .+|+..+.++.|+|..+
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a 120 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLN 120 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEEC
Confidence 35678999999999999999999999999 67999987754 6789999999999999999 68999999999999988
Q ss_pred CCC
Q psy2618 82 SSP 84 (390)
Q Consensus 82 ~~~ 84 (390)
...
T Consensus 121 ~~~ 123 (139)
T 2hgn_A 121 STT 123 (139)
T ss_dssp CCS
T ss_pred CCC
Confidence 764
No 326
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.64 E-value=3e-16 Score=112.65 Aligned_cols=78 Identities=22% Similarity=0.328 Sum_probs=67.1
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCCC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASSP 84 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 84 (390)
.++++|||+|||+++++++|+++|+.||+|.+|++..+ ++|||||+|.+.++|++|+. ....+.++.|.|.++.++
T Consensus 3 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~~a~~~ 78 (88)
T 1wf0_A 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHISNAEPK 78 (88)
T ss_dssp SCCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEECCCCC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEEecCCC
Confidence 57899999999999999999999999999999998765 68899999999999986543 234468899999998775
Q ss_pred CC
Q psy2618 85 GN 86 (390)
Q Consensus 85 ~~ 86 (390)
..
T Consensus 79 ~~ 80 (88)
T 1wf0_A 79 HN 80 (88)
T ss_dssp CC
T ss_pred CC
Confidence 44
No 327
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.5e-15 Score=106.38 Aligned_cols=77 Identities=14% Similarity=0.271 Sum_probs=67.7
Q ss_pred Ccce-eEEcCCCCCCcHHH----HHhhhcCCC-ceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecc
Q psy2618 205 TNCT-VYCGGFGKDLNEEL----VSKVFSPFG-TIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278 (390)
Q Consensus 205 ~~~~-l~v~~l~~~~~~~~----l~~~f~~~g-~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 278 (390)
++.+ |||+|||..+++++ |+++|++|| .|++|. .|+|||+|.+.++|.+|++.|+|..+.||.|+|.|++
T Consensus 7 p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~Vt----gG~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~ 82 (96)
T 2diu_A 7 GCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSIT----GCSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTP 82 (96)
T ss_dssp CSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEECC----TTCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSC
T ss_pred CcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEEe----cCEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecC
Confidence 3444 99999999999988 558999995 999982 3999999999999999999999999999999999999
Q ss_pred cCCCCCC
Q psy2618 279 ESENNST 285 (390)
Q Consensus 279 ~~~~~~~ 285 (390)
.......
T Consensus 83 ~~sd~~~ 89 (96)
T 2diu_A 83 KNRELCE 89 (96)
T ss_dssp CSCCCCC
T ss_pred CCcceeE
Confidence 8875543
No 328
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.64 E-value=1.9e-16 Score=120.10 Aligned_cols=77 Identities=21% Similarity=0.301 Sum_probs=69.0
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCc----eEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPV----KGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v----~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.+.++|||+|||+++++++|+++|+.||.| .+|+++.+.+ ++|||||+|.+.++|++||+. ++..+.++.|.|
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V 99 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIEL 99 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEE
Confidence 567899999999999999999999999875 6899887754 568999999999999999986 999999999999
Q ss_pred eecC
Q psy2618 79 NWAS 82 (390)
Q Consensus 79 ~~~~ 82 (390)
..+.
T Consensus 100 ~~a~ 103 (123)
T 2dha_A 100 FRST 103 (123)
T ss_dssp EEEC
T ss_pred EECC
Confidence 8764
No 329
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.64 E-value=3.6e-16 Score=112.12 Aligned_cols=73 Identities=29% Similarity=0.539 Sum_probs=67.4
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhccc----C-------CceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQI----G-------PVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFL 72 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~----G-------~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~ 72 (390)
.++.++|||+|||+++++++|+++|+.| | .|.++++.++ +|||||+|.+.++|.+|+ .||+..+.
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~---kg~afV~f~~~~~a~~A~-~l~g~~~~ 78 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD---KNFAFLEFRSVDETTQAM-AFDGIIFQ 78 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS---SSEEEEEESSHHHHHHHG-GGTTCEET
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC---CcEEEEEcCCHHHHHHHH-hcCCCEEC
Confidence 4578999999999999999999999999 8 8999988654 679999999999999999 89999999
Q ss_pred cceeeEee
Q psy2618 73 EKEMKVNW 80 (390)
Q Consensus 73 g~~l~v~~ 80 (390)
|+.|+|+.
T Consensus 79 g~~l~V~r 86 (87)
T 2hzc_A 79 GQSLKIRR 86 (87)
T ss_dssp TEECEEEC
T ss_pred CeEEEEeC
Confidence 99999974
No 330
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.64 E-value=2.1e-16 Score=134.23 Aligned_cols=78 Identities=18% Similarity=0.247 Sum_probs=71.7
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccC--CceEEEEeecCC---CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIG--PVKGCKVIREPG---NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G--~v~~v~~~~~~~---~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
..++|||+|||+++++++|+++|+.|| .|.+|+++.++. ++|||||+|.+.++|++||+.||+..|.|+.|+|.+
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~ 146 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTP 146 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEE
Confidence 678999999999999999999999999 999999998863 568999999999999999999999999999999998
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
+..
T Consensus 147 a~~ 149 (229)
T 3q2s_C 147 VNK 149 (229)
T ss_dssp CCH
T ss_pred CCC
Confidence 864
No 331
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.63 E-value=1.2e-16 Score=118.36 Aligned_cols=80 Identities=25% Similarity=0.446 Sum_probs=72.5
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+.+.++|||+|||.++++++|+++|+.||.|.+|++..+++ ++|||||+|.+.++|++|++ ++..+.|+.|.|.++
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a 83 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPA 83 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEEC
Confidence 34678999999999999999999999999999999998764 46899999999999999998 899999999999998
Q ss_pred CCCC
Q psy2618 82 SSPG 85 (390)
Q Consensus 82 ~~~~ 85 (390)
....
T Consensus 84 ~~~~ 87 (102)
T 2xs2_A 84 IRKQ 87 (102)
T ss_dssp EECC
T ss_pred CcCc
Confidence 7543
No 332
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.63 E-value=2.8e-16 Score=119.25 Aligned_cols=80 Identities=24% Similarity=0.228 Sum_probs=72.8
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCe----eEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEI----SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i----~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
...++|||+|||+++++++|+++|+.||.| ..|.++.+ .+|+++|||||+|.+.++|.+|++. ++..+++|.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d-~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTY-PDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEEC-TTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEEC-CCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEE
Confidence 346899999999999999999999999975 68999998 5889999999999999999999986 99999999999
Q ss_pred EeecCC
Q psy2618 169 TNWSTR 174 (390)
Q Consensus 169 v~~~~~ 174 (390)
|..+..
T Consensus 99 V~~a~~ 104 (123)
T 2dha_A 99 LFRSTA 104 (123)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988754
No 333
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.44 E-value=1.9e-17 Score=125.62 Aligned_cols=87 Identities=28% Similarity=0.406 Sum_probs=80.8
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeE--------EEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN--------CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~--------~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
..+.++|||+|||.++++++|+++|+.||.|.. +.++.++.+++++|||||+|.+.++|.+|++.|++..+.
T Consensus 4 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~ 83 (116)
T 2lcw_A 4 NSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFS 83 (116)
Confidence 456789999999999999999999999999998 899999889999999999999999999999999999999
Q ss_pred CeeEEEeecCCCCCC
Q psy2618 164 SRSIRTNWSTRKPPA 178 (390)
Q Consensus 164 g~~i~v~~~~~~~~~ 178 (390)
|+.|.|.++..+...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 84 GNPIKVSFATRRADF 98 (116)
Confidence 999999999876543
No 334
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.63 E-value=6.2e-16 Score=113.06 Aligned_cols=81 Identities=28% Similarity=0.368 Sum_probs=73.0
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||.++++++|+++|+.||.|..+ ..+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-----~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-----SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-----EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-----CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 44567999999999999999999999999988766 3467889999999999999999999999999999999999
Q ss_pred ecCCCC
Q psy2618 171 WSTRKP 176 (390)
Q Consensus 171 ~~~~~~ 176 (390)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 997654
No 335
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=5.1e-16 Score=117.99 Aligned_cols=81 Identities=26% Similarity=0.338 Sum_probs=72.7
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCee--EEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS--NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~--~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
.....++|||+|||+++++++|+++|+.| .|. +|.+++++. |+++|||||+|.+.++|.+|++. ++..++||.|.
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~-GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~ 114 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPE-GKITGEAFVQFASQELAEKALGK-HKERIGHRYIE 114 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSS-SSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCC-CCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEE
Confidence 44567899999999999999999999999 566 899999877 89999999999999999999975 77999999999
Q ss_pred EeecCC
Q psy2618 169 TNWSTR 174 (390)
Q Consensus 169 v~~~~~ 174 (390)
|..+..
T Consensus 115 V~~a~~ 120 (126)
T 2hgm_A 115 VFKSSQ 120 (126)
T ss_dssp CEEECH
T ss_pred EEECCH
Confidence 988753
No 336
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.63 E-value=1.6e-15 Score=115.34 Aligned_cols=78 Identities=26% Similarity=0.264 Sum_probs=71.0
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
..+.++|||+|| ++++++|+++|+.||.|.+|++. .++|||||+|.+.++|.+|++.|++..+.|+.|.|.++..
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~---~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~ 110 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMD---PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARK 110 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCS
T ss_pred CCCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCC
Confidence 457899999996 69999999999999999999986 4678999999999999999999999999999999999987
Q ss_pred CCC
Q psy2618 84 PGN 86 (390)
Q Consensus 84 ~~~ 86 (390)
...
T Consensus 111 ~~~ 113 (121)
T 2bz2_A 111 QPM 113 (121)
T ss_dssp SCC
T ss_pred CCC
Confidence 543
No 337
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.62 E-value=5.1e-16 Score=117.96 Aligned_cols=78 Identities=21% Similarity=0.278 Sum_probs=68.9
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhcccCCce--EEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVK--GCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~--~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
..+.++|||+|||+++++++|+++|+.| .|+ +|++..++. ++|||||+|.+.++|++||+. ++..+.|+.|.|.
T Consensus 39 ~~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~ 116 (126)
T 2hgm_A 39 SANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVF 116 (126)
T ss_dssp SSSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEE
Confidence 3567899999999999999999999999 577 899887654 679999999999999999985 7789999999998
Q ss_pred ecCC
Q psy2618 80 WASS 83 (390)
Q Consensus 80 ~~~~ 83 (390)
.+..
T Consensus 117 ~a~~ 120 (126)
T 2hgm_A 117 KSSQ 120 (126)
T ss_dssp EECH
T ss_pred ECCH
Confidence 8753
No 338
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.62 E-value=2.8e-16 Score=116.30 Aligned_cols=82 Identities=23% Similarity=0.456 Sum_probs=76.1
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+|||+++++++|+++|+.||.|..+.++.++ +|+++|||||+|.+.++|.+|++ ++..++|+.|.|.+
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~-~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~ 82 (102)
T 2xs2_A 6 KIMPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDR-TGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGP 82 (102)
T ss_dssp EEEEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECT-TSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECC-CCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEE
Confidence 3457899999999999999999999999999999999998 88999999999999999999997 89999999999998
Q ss_pred cCCCC
Q psy2618 172 STRKP 176 (390)
Q Consensus 172 ~~~~~ 176 (390)
+..+.
T Consensus 83 a~~~~ 87 (102)
T 2xs2_A 83 AIRKQ 87 (102)
T ss_dssp EEECC
T ss_pred CCcCc
Confidence 87553
No 339
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.62 E-value=1.9e-15 Score=119.04 Aligned_cols=82 Identities=18% Similarity=0.291 Sum_probs=73.2
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCC--eeEE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS--RSIR 168 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g--~~i~ 168 (390)
......+|||+||++.+++++|+++|++||.|.+|.+..+ +++|||||+|.+.++|++|++.|+|..+.+ +.|+
T Consensus 42 ~ps~vl~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k----~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~ 117 (164)
T 1sjr_A 42 GQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLR 117 (164)
T ss_dssp CCCCEEEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEES----SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEE
T ss_pred CCCceEEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeC----CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEE
Confidence 3455678999999999999999999999999999998654 357899999999999999999999999965 9999
Q ss_pred EeecCCCC
Q psy2618 169 TNWSTRKP 176 (390)
Q Consensus 169 v~~~~~~~ 176 (390)
|+|+..+.
T Consensus 118 V~~Ak~~~ 125 (164)
T 1sjr_A 118 IDFSKLTS 125 (164)
T ss_dssp EEECSSSS
T ss_pred EEEecCCc
Confidence 99998764
No 340
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.62 E-value=2.8e-16 Score=146.07 Aligned_cols=78 Identities=19% Similarity=0.338 Sum_probs=72.5
Q ss_pred CcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC------CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecc
Q psy2618 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278 (390)
Q Consensus 205 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~------~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 278 (390)
+.++|||+||+..+++++|.++|+.||.|+.|.|+.+ +|||||+|.+.++|.+||..||+..|+|+.|.|.++.
T Consensus 101 ~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~ 180 (437)
T 3pgw_S 101 AFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVER 180 (437)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeC
Confidence 4568999999999999999999999999999999865 7999999999999999999999999999999999998
Q ss_pred cCCC
Q psy2618 279 ESEN 282 (390)
Q Consensus 279 ~~~~ 282 (390)
....
T Consensus 181 ~~~~ 184 (437)
T 3pgw_S 181 GRTV 184 (437)
T ss_pred CCCC
Confidence 6543
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.62 E-value=1.4e-15 Score=123.80 Aligned_cols=84 Identities=23% Similarity=0.342 Sum_probs=78.6
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEe
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~ 170 (390)
.....++|||+|||+.+++++|+++|+.||.|..|.++.++ +++++|||||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~-~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDR-SGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCT-TSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECC-CCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 34557899999999999999999999999999999999997 88999999999999999999999999999999999999
Q ss_pred ecCCC
Q psy2618 171 WSTRK 175 (390)
Q Consensus 171 ~~~~~ 175 (390)
++...
T Consensus 163 ~a~~~ 167 (177)
T 2f3j_A 163 LVASQ 167 (177)
T ss_dssp EESSG
T ss_pred EecCC
Confidence 98654
No 342
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.9e-15 Score=108.88 Aligned_cols=79 Identities=22% Similarity=0.357 Sum_probs=70.2
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 171 (390)
....++|||+|||+++++++|+++|+.||.|.+| +.++.+++ ||||+|.+.++|.+|++ +++..+.|+.|.|.+
T Consensus 5 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v--~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~ 78 (94)
T 2e5g_A 5 SSGLRSVFVSGFPRGVDSAQLSEYFLAFGPVASV--VMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRP 78 (94)
T ss_dssp CTTCCEEEEECCCTTCCHHHHHHHGGGTSCEEEE--EECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEECCCBC
T ss_pred cCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEE--EEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEE
Confidence 3456899999999999999999999999999987 56655654 99999999999999999 999999999999998
Q ss_pred cCCCC
Q psy2618 172 STRKP 176 (390)
Q Consensus 172 ~~~~~ 176 (390)
+..+.
T Consensus 79 a~~~~ 83 (94)
T 2e5g_A 79 REQKE 83 (94)
T ss_dssp SCCSC
T ss_pred CCcCC
Confidence 86554
No 343
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.61 E-value=1.7e-15 Score=114.36 Aligned_cols=75 Identities=19% Similarity=0.284 Sum_probs=66.9
Q ss_pred CcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeE-----EEEEeccc
Q psy2618 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT-----VKCFWGKE 279 (390)
Q Consensus 205 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~-----i~v~~~~~ 279 (390)
..++|||+|||.++++++|+++|+.||.|+++.++.+ |+|||+|.+.++|.+|++.||+..++|+. |+|..+.+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~-g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i~v~~~~~ 93 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD-GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGP 93 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT-SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBCEEEECC-
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC-CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEEEeccCCC
Confidence 3568999999999999999999999999999999988 99999999999999999999999999988 66666555
Q ss_pred C
Q psy2618 280 S 280 (390)
Q Consensus 280 ~ 280 (390)
.
T Consensus 94 ~ 94 (115)
T 3beg_B 94 R 94 (115)
T ss_dssp -
T ss_pred C
Confidence 3
No 344
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.61 E-value=7.9e-15 Score=110.18 Aligned_cols=83 Identities=13% Similarity=0.137 Sum_probs=72.0
Q ss_pred CCCCCCeEEEeCCC--hhc---------cHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeee
Q psy2618 3 DESQPTTLYVGNLD--VSV---------TEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVF 71 (390)
Q Consensus 3 ~~~~~~~l~v~nLp--~~~---------~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~ 71 (390)
...++++|+|+||. .++ .+++|+++|++||.|.+|.+ .++.++|||||+|.+.++|.+|++.||+..+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 45678999999993 321 36899999999999999965 6667899999999999999999999999999
Q ss_pred ccceeeEeecCCCCC
Q psy2618 72 LEKEMKVNWASSPGN 86 (390)
Q Consensus 72 ~g~~l~v~~~~~~~~ 86 (390)
.|+.|.|.++.....
T Consensus 90 ~gr~l~v~~a~~~~~ 104 (112)
T 2dit_A 90 GGRQITAQAWDGTTD 104 (112)
T ss_dssp TTEECEEEECCSCCC
T ss_pred CCcEEEEEEeCCCCC
Confidence 999999999976543
No 345
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.61 E-value=2.2e-15 Score=110.04 Aligned_cols=81 Identities=16% Similarity=0.387 Sum_probs=73.0
Q ss_pred CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEE-EEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEE
Q psy2618 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169 (390)
Q Consensus 91 ~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~-~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v 169 (390)
.....++|||+|||+++++++|+++|+.||.|.++ .++.++.++ .|||+|.+.++|.+|++.|++..+.|+.|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~----~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V 86 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETA----VVNVTYSSKDQARQALDKLNGFQLENFTLKV 86 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSE----EEEEEESSHHHHHHHHHHHTTCBCSSCBCEE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCC----EEEEEECCHHHHHHHHHHhCCCEECCcEEEE
Confidence 34457899999999999999999999999999999 588875543 3999999999999999999999999999999
Q ss_pred eecCCC
Q psy2618 170 NWSTRK 175 (390)
Q Consensus 170 ~~~~~~ 175 (390)
.++.++
T Consensus 87 ~~a~~~ 92 (96)
T 2e44_A 87 AYIPDE 92 (96)
T ss_dssp EECCCC
T ss_pred EEcCcc
Confidence 999876
No 346
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.60 E-value=4.7e-15 Score=122.54 Aligned_cols=119 Identities=16% Similarity=0.183 Sum_probs=92.9
Q ss_pred cHHHHHHHHHHh--cCeeeccceeeEeecCCCCCCCCC----CCCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEe
Q psy2618 55 HHTVAATALAAM--NKRVFLEKEMKVNWASSPGNQPKQ----DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIV 128 (390)
Q Consensus 55 ~~~~A~~a~~~l--~~~~~~g~~l~v~~~~~~~~~~~~----~~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~ 128 (390)
+.+.+..|++.. ....+.+....|............ .....++|||+|||+++++++|+++|+.||.|..+.+.
T Consensus 63 d~~~I~~Al~~S~~~~lev~ed~~~vrR~~~~p~p~~~~~~~~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~ 142 (193)
T 2voo_A 63 DFNVIVEALSKSKAELMEISEDKTKIRRSPSKPLPEVTDEYKNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMR 142 (193)
T ss_dssp CHHHHHHHHHTCSSCCEEECTTSSEEEECTTSCCCCCCHHHHHHHHHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEE
T ss_pred CHHHHHHHHhhcccceEEEecccceEEecccCCCcccchhhhhccccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEE
Confidence 567777787765 455666766677665321111000 12246899999999999999999999999999999999
Q ss_pred eCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecCCC
Q psy2618 129 RDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175 (390)
Q Consensus 129 ~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 175 (390)
++. +++++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++...
T Consensus 143 ~~~-~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~y 187 (193)
T 2voo_A 143 RTL-HKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDDY 187 (193)
T ss_dssp ECT-TCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTTC
T ss_pred ECC-CCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHHH
Confidence 885 4789999999999999999999765 46999999999987654
No 347
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.60 E-value=3.3e-15 Score=113.57 Aligned_cols=77 Identities=26% Similarity=0.467 Sum_probs=71.6
Q ss_pred CCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 204 ~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
...++|||+|+ ++++++|+++|+.||.|.++.+.+.+|+|||+|.+.++|.+|++.|++..++|+.|.|.+++....
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~ 113 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPM 113 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCC
Confidence 35678999996 699999999999999999999999999999999999999999999999999999999999987643
No 348
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.60 E-value=5.9e-15 Score=108.80 Aligned_cols=80 Identities=20% Similarity=0.223 Sum_probs=70.7
Q ss_pred CCCCCeEEEeCCCh-----hccHHHHHHHhcccCCceEEEEeecC----CCCCeEEEEEccHHHHHHHHHHhcCeeeccc
Q psy2618 4 ESQPTTLYVGNLDV-----SVTEELLCALFSQIGPVKGCKVIREP----GNDPYAFLEFVHHTVAATALAAMNKRVFLEK 74 (390)
Q Consensus 4 ~~~~~~l~v~nLp~-----~~~~~~l~~~f~~~G~v~~v~~~~~~----~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~ 74 (390)
..++++|+|+||.. +.++++|++.|++||.|.+|++..++ .++|+|||+|.+.++|.+|++.|||+.+.|+
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr 84 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGR 84 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCc
Confidence 35789999999962 34789999999999999999998864 3689999999999999999999999999999
Q ss_pred eeeEeecCC
Q psy2618 75 EMKVNWASS 83 (390)
Q Consensus 75 ~l~v~~~~~ 83 (390)
.|.|.++..
T Consensus 85 ~i~v~~a~~ 93 (105)
T 2pe8_A 85 VVKACFYNL 93 (105)
T ss_dssp ECEEEECCH
T ss_pred EEEEEEcCH
Confidence 999999853
No 349
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.60 E-value=5.6e-15 Score=105.88 Aligned_cols=76 Identities=25% Similarity=0.476 Sum_probs=62.2
Q ss_pred CCCcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-CCeEEEEecCHHHHHHHHHHhcCce--ecCeEEEEEeccc
Q psy2618 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-KGYAFVKFTTKETATHAIESIHNTD--INGHTVKCFWGKE 279 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~--~~g~~i~v~~~~~ 279 (390)
..+.++|||+|||.++++++|+++|++||.|+++.++++ ||||||+|.+.++|.+ +++.. +.|+.|.|.++.+
T Consensus 8 ~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~ 83 (89)
T 3d2w_A 8 HHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEP 83 (89)
T ss_dssp ---CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCC
Confidence 345678999999999999999999999999999999976 8999999999999883 45555 4699999999987
Q ss_pred CCC
Q psy2618 280 SEN 282 (390)
Q Consensus 280 ~~~ 282 (390)
+..
T Consensus 84 k~~ 86 (89)
T 3d2w_A 84 KHN 86 (89)
T ss_dssp ---
T ss_pred CCc
Confidence 643
No 350
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.59 E-value=3e-15 Score=107.22 Aligned_cols=71 Identities=20% Similarity=0.449 Sum_probs=67.3
Q ss_pred CcceeEEcCCCCCCcHHHHHhhhcCC----C-------ceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEE
Q psy2618 205 TNCTVYCGGFGKDLNEELVSKVFSPF----G-------TIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVK 273 (390)
Q Consensus 205 ~~~~l~v~~l~~~~~~~~l~~~f~~~----g-------~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~ 273 (390)
..++|||+|||.++++++|+++|+.| | .|.++.+.+++|+|||+|.+.++|.+|+ .||+..++|+.|+
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~ 83 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLK 83 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSSSSEEEEEESSHHHHHHHG-GGTTCEETTEECE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEE
Confidence 35679999999999999999999999 8 9999999999999999999999999999 9999999999999
Q ss_pred EEe
Q psy2618 274 CFW 276 (390)
Q Consensus 274 v~~ 276 (390)
|+.
T Consensus 84 V~r 86 (87)
T 2hzc_A 84 IRR 86 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 963
No 351
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.59 E-value=4.7e-15 Score=111.85 Aligned_cols=76 Identities=21% Similarity=0.249 Sum_probs=64.9
Q ss_pred CCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecC------CCCCeEEEEEccHHHHHHHHHHhcCeeecccee
Q psy2618 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP------GNDPYAFLEFVHHTVAATALAAMNKRVFLEKEM 76 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~------~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 76 (390)
..++.++|||+|||+++++++|+++|+.||.|. +.++.+. .++|||||+|.+.++|++|++.|+ .++|+.+
T Consensus 4 ~~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~ 80 (114)
T 2dnl_A 4 GSSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLY 80 (114)
T ss_dssp SSSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEE
T ss_pred CCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEE
Confidence 356789999999999999999999999999999 7776654 458999999999999999999884 3677777
Q ss_pred eEeec
Q psy2618 77 KVNWA 81 (390)
Q Consensus 77 ~v~~~ 81 (390)
.+..+
T Consensus 81 ~~~~~ 85 (114)
T 2dnl_A 81 LCVSS 85 (114)
T ss_dssp EEECC
T ss_pred EeccC
Confidence 77644
No 352
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.58 E-value=9.9e-15 Score=110.07 Aligned_cols=79 Identities=24% Similarity=0.415 Sum_probs=69.4
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCC---CCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEE
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQT---LKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~---g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~ 168 (390)
....++|||+|||+++++++|+++|++||.|. +.++.+..+ |+++|||||+|.+.++|.+|++.++ .++|+.+.
T Consensus 5 ~~~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~ 81 (114)
T 2dnl_A 5 SSGSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDACL--EEDGKLYL 81 (114)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEE
T ss_pred CCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEE
Confidence 34578999999999999999999999999999 888888777 7999999999999999999999873 47888887
Q ss_pred EeecC
Q psy2618 169 TNWST 173 (390)
Q Consensus 169 v~~~~ 173 (390)
+..+.
T Consensus 82 ~~~~~ 86 (114)
T 2dnl_A 82 CVSSP 86 (114)
T ss_dssp EECCS
T ss_pred eccCC
Confidence 77544
No 353
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.57 E-value=1.3e-15 Score=120.04 Aligned_cols=85 Identities=21% Similarity=0.342 Sum_probs=73.3
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEE--E---eeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCee
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCR--I---VRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS 166 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~--~---~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 166 (390)
....++|||+|||+++++++|+++|+.||.|..+. + ++...+|+++|||||+|.+.++|.+|++.|++..+.|+.
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 121 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKP 121 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcE
Confidence 45578999999999999999999999999987741 1 111246789999999999999999999999999999999
Q ss_pred EEEeecCCCC
Q psy2618 167 IRTNWSTRKP 176 (390)
Q Consensus 167 i~v~~~~~~~ 176 (390)
|.|.++....
T Consensus 122 l~V~~a~~~~ 131 (143)
T 3egn_A 122 MVVQFARSAR 131 (143)
T ss_dssp CEEEECCCSC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 354
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.57 E-value=6.1e-15 Score=105.78 Aligned_cols=77 Identities=23% Similarity=0.420 Sum_probs=65.6
Q ss_pred CcceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecC-CCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCCC
Q psy2618 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283 (390)
Q Consensus 205 ~~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~-~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~~ 283 (390)
..++|||+|||.++++++|+++|++||.|+++.++++ +|+|||+|.+.++|.+++.. ...+.|+.|.|.+++++...
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~~~ 81 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKHNS 81 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCCCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCCCC
Confidence 4578999999999999999999999999999999876 89999999999999754321 23458999999998877543
No 355
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=5.7e-15 Score=124.47 Aligned_cols=80 Identities=33% Similarity=0.510 Sum_probs=72.2
Q ss_pred CCCcceeEEcCCCCCC---------cHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCcee------
Q psy2618 203 SPTNCTVYCGGFGKDL---------NEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDI------ 267 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~---------~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~------ 267 (390)
....++|||+||+..+ ++++|+++|++||.|++|++++++|+|||+|.+.++|..|++.|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~~~ 210 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVESKNCGFVKFKYQANAEFAKEAMSNQTLLLPSDK 210 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGGGTEEEEEESSHHHHHHHHHHHTTCCCCCTTST
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECCCCEEEEEeCCHHHHHHHHHHhCCCEEeccccc
Confidence 3456789999999998 7999999999999999999999999999999999999999999999999
Q ss_pred ------cCeEEEEEecccCCC
Q psy2618 268 ------NGHTVKCFWGKESEN 282 (390)
Q Consensus 268 ------~g~~i~v~~~~~~~~ 282 (390)
.|+.|.|.|++...+
T Consensus 211 e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 211 EWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp TGGGGGGSCCCEEEECC----
T ss_pred cccccCCCCEEEEEEccCCCC
Confidence 899999999987654
No 356
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.57 E-value=7.7e-15 Score=123.69 Aligned_cols=79 Identities=24% Similarity=0.427 Sum_probs=71.3
Q ss_pred CCCCCeEEEeCCChhc---------cHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeee---
Q psy2618 4 ESQPTTLYVGNLDVSV---------TEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVF--- 71 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~---------~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~--- 71 (390)
..+.++|||+||+.++ ++++|+++|+.||+|.+|+++.+ +|||||+|.+.++|+.|+++|++..+
T Consensus 131 ~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~---kG~AFV~F~~~~~Ae~A~~am~g~~l~~~ 207 (240)
T 3u1l_A 131 RKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES---KNCGFVKFKYQANAEFAKEAMSNQTLLLP 207 (240)
T ss_dssp CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG---GTEEEEEESSHHHHHHHHHHHTTCCCCCT
T ss_pred ccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC---CCEEEEEeCCHHHHHHHHHHhCCCEEecc
Confidence 5678999999999998 79999999999999999999864 67999999999999999999999999
Q ss_pred ---------ccceeeEeecCCCC
Q psy2618 72 ---------LEKEMKVNWASSPG 85 (390)
Q Consensus 72 ---------~g~~l~v~~~~~~~ 85 (390)
.|+.|.|.|+....
T Consensus 208 ~~~e~~~~~~gr~L~V~wA~~~p 230 (240)
T 3u1l_A 208 SDKEWDDRREGTGLLVKWANEDP 230 (240)
T ss_dssp TSTTGGGGGGSCCCEEEECC---
T ss_pred ccccccccCCCCEEEEEEccCCC
Confidence 89999999998643
No 357
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.55 E-value=2.6e-14 Score=105.36 Aligned_cols=82 Identities=18% Similarity=0.345 Sum_probs=72.4
Q ss_pred CCceEEEEcCCCc-----ccCHHHHHHHhCCCCCeeEEEEeeCCCC-CCCCcEEEEEecCHHHHHHHHHHhcCceeCCee
Q psy2618 93 SNHYHIFVGDLSP-----EIETQTLKEAFAPFGEISNCRIVRDPQT-LKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS 166 (390)
Q Consensus 93 ~~~~~l~v~nl~~-----~~~~~~l~~~f~~~G~i~~~~~~~~~~~-g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~ 166 (390)
.++++|+|.||.. +-++++|++.|++||.|.++.+++++.+ ++++||+||+|.+.++|.+|++.|+|..+.||.
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~ 85 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRV 85 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcE
Confidence 4568899999962 2368999999999999999999998654 688999999999999999999999999999999
Q ss_pred EEEeecCC
Q psy2618 167 IRTNWSTR 174 (390)
Q Consensus 167 i~v~~~~~ 174 (390)
|.|.++..
T Consensus 86 i~v~~a~~ 93 (105)
T 2pe8_A 86 VKACFYNL 93 (105)
T ss_dssp CEEEECCH
T ss_pred EEEEEcCH
Confidence 99999853
No 358
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.53 E-value=1.5e-14 Score=107.36 Aligned_cols=76 Identities=9% Similarity=0.134 Sum_probs=67.3
Q ss_pred CeEEEeCC----ChhccHHHHHHHhcccCCceEEEEeecCC---CCCeEEEEEcc----HHH----HHHHHH--HhcCee
Q psy2618 8 TTLYVGNL----DVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVH----HTV----AATALA--AMNKRV 70 (390)
Q Consensus 8 ~~l~v~nL----p~~~~~~~l~~~f~~~G~v~~v~~~~~~~---~~g~afV~F~~----~~~----A~~a~~--~l~~~~ 70 (390)
+.|+|+|| |+.+++++|+++|+.||+|.+|+++.|+. ++|||||+|.+ .++ |.+|++ .+++..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 78999999 99999999999999999999999999986 47999999996 333 889988 689999
Q ss_pred eccceeeEeecCC
Q psy2618 71 FLEKEMKVNWASS 83 (390)
Q Consensus 71 ~~g~~l~v~~~~~ 83 (390)
+.|++|+|.....
T Consensus 83 I~Gr~irV~ln~~ 95 (136)
T 2j8a_A 83 IMGFKFEVILNKH 95 (136)
T ss_dssp ETTEEEEEEECCT
T ss_pred ecCcEEEEEECcc
Confidence 9999999996653
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.52 E-value=2.3e-14 Score=118.35 Aligned_cols=78 Identities=12% Similarity=0.145 Sum_probs=70.0
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeecCC
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWASS 83 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~ 83 (390)
+.++|||+|||+++++++|+++|+.||+|.+|++.++.. ++|||||+|.+.++|.+|++.+ +..+.|+.|.|.++..
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~~~~ 186 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILFKDD 186 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEETTT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEEhHH
Confidence 358999999999999999999999999999999988654 5689999999999999999865 4589999999999876
Q ss_pred C
Q psy2618 84 P 84 (390)
Q Consensus 84 ~ 84 (390)
.
T Consensus 187 y 187 (193)
T 2voo_A 187 Y 187 (193)
T ss_dssp C
T ss_pred H
Confidence 3
No 360
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.51 E-value=4.7e-14 Score=104.04 Aligned_cols=78 Identities=18% Similarity=0.195 Sum_probs=68.9
Q ss_pred CCCCeEEEeCC--Chhc--------cHHHHHHHhcccCCceEEEEeecC-----CCCCeEEEEEccHHHHHHHHHHhcCe
Q psy2618 5 SQPTTLYVGNL--DVSV--------TEELLCALFSQIGPVKGCKVIREP-----GNDPYAFLEFVHHTVAATALAAMNKR 69 (390)
Q Consensus 5 ~~~~~l~v~nL--p~~~--------~~~~l~~~f~~~G~v~~v~~~~~~-----~~~g~afV~F~~~~~A~~a~~~l~~~ 69 (390)
.+++.|.|+|+ |.+. .+++|++.|++||+|.+|++.++. .++|+|||+|.+.++|.+|++.|||+
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 57899999998 4443 346999999999999999998765 35799999999999999999999999
Q ss_pred eeccceeeEeecC
Q psy2618 70 VFLEKEMKVNWAS 82 (390)
Q Consensus 70 ~~~g~~l~v~~~~ 82 (390)
.+.|+.|.+.++.
T Consensus 83 ~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 83 KFANRVVVTKYCD 95 (105)
T ss_dssp EETTEECEEEEEC
T ss_pred EeCCCEEEEEEeC
Confidence 9999999999875
No 361
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.47 E-value=5.2e-13 Score=100.16 Aligned_cols=81 Identities=19% Similarity=0.193 Sum_probs=69.1
Q ss_pred CCCcceeEEcCCCCCC-----------cHHHHHhhhcCCCceeEEEEec--CCCeEEEEecCHHHHHHHHHHhcCceecC
Q psy2618 203 SPTNCTVYCGGFGKDL-----------NEELVSKVFSPFGTIVDIRVFK--EKGYAFVKFTTKETATHAIESIHNTDING 269 (390)
Q Consensus 203 ~~~~~~l~v~~l~~~~-----------~~~~l~~~f~~~g~v~~~~~~~--~~g~~fv~f~~~~~a~~a~~~l~~~~~~g 269 (390)
..++++|+|.||.... ++++|+++|++||.|+++.|.. .+|+|||+|.+.++|.+|++.|||..++|
T Consensus 12 ~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 91 (112)
T 2dit_A 12 MRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGG 91 (112)
T ss_dssp CCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEETT
T ss_pred CCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 3456789999995433 2689999999999999997753 37999999999999999999999999999
Q ss_pred eEEEEEecccCCCC
Q psy2618 270 HTVKCFWGKESENN 283 (390)
Q Consensus 270 ~~i~v~~~~~~~~~ 283 (390)
+.|.|.++.+....
T Consensus 92 r~l~v~~a~~~~~~ 105 (112)
T 2dit_A 92 RQITAQAWDGTTDY 105 (112)
T ss_dssp EECEEEECCSCCCS
T ss_pred cEEEEEEeCCCCCc
Confidence 99999999876543
No 362
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.46 E-value=2.3e-13 Score=102.17 Aligned_cols=78 Identities=18% Similarity=0.191 Sum_probs=68.3
Q ss_pred CCCCeEEEeCCC--hh---ccHHHHHHHhcccCCceEEEEeecCC-------CCCeEEEEEccHHHHHHHHHHhcCeeec
Q psy2618 5 SQPTTLYVGNLD--VS---VTEELLCALFSQIGPVKGCKVIREPG-------NDPYAFLEFVHHTVAATALAAMNKRVFL 72 (390)
Q Consensus 5 ~~~~~l~v~nLp--~~---~~~~~l~~~f~~~G~v~~v~~~~~~~-------~~g~afV~F~~~~~A~~a~~~l~~~~~~ 72 (390)
.++++|+|+|+- .+ --++||++.|++||+|.+|++.++.. ++|+|||+|.+.++|.+|++.|||+.+.
T Consensus 18 ~ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~ 97 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFA 97 (118)
T ss_dssp HSCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEET
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEEC
Confidence 478999999993 22 23689999999999999999987753 3589999999999999999999999999
Q ss_pred cceeeEeecC
Q psy2618 73 EKEMKVNWAS 82 (390)
Q Consensus 73 g~~l~v~~~~ 82 (390)
|+.|.+.++.
T Consensus 98 GR~i~v~~~~ 107 (118)
T 3ue2_A 98 GRKVVAEVYD 107 (118)
T ss_dssp TEECEEEEEC
T ss_pred CcEEEEEEcC
Confidence 9999999875
No 363
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.45 E-value=6.4e-13 Score=96.51 Aligned_cols=79 Identities=15% Similarity=0.190 Sum_probs=66.5
Q ss_pred CCCCCeEEEeCCC-------hhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecccee
Q psy2618 4 ESQPTTLYVGNLD-------VSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEM 76 (390)
Q Consensus 4 ~~~~~~l~v~nLp-------~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l 76 (390)
.....+|.|+-.. .++++++|+++|++||.|.+|.+. +.++|||||+|.+.++|+.|++.++ .+.++.|
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~g~~l 82 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV--GLVDNPL 82 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC--BCSSSBC
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC--CCCCCeE
Confidence 3456788888765 458999999999999999999987 3578999999999999999998744 4679999
Q ss_pred eEeecCCCCC
Q psy2618 77 KVNWASSPGN 86 (390)
Q Consensus 77 ~v~~~~~~~~ 86 (390)
+|.|+.....
T Consensus 83 ~V~~a~~~~~ 92 (100)
T 2d9o_A 83 KISWLEGQPQ 92 (100)
T ss_dssp EEECSSCCCC
T ss_pred EEEEccCCCC
Confidence 9999987543
No 364
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.43 E-value=6e-13 Score=98.09 Aligned_cols=80 Identities=15% Similarity=0.330 Sum_probs=69.5
Q ss_pred CceEEEEcCC--CcccC--------HHHHHHHhCCCCCeeEEEEeeCCCC--CCCCcEEEEEecCHHHHHHHHHHhcCce
Q psy2618 94 NHYHIFVGDL--SPEIE--------TQTLKEAFAPFGEISNCRIVRDPQT--LKSKGYAFVSFVKKAEAENAITAMNGQW 161 (390)
Q Consensus 94 ~~~~l~v~nl--~~~~~--------~~~l~~~f~~~G~i~~~~~~~~~~~--g~~~g~afv~f~~~~~a~~a~~~l~~~~ 161 (390)
+++.|.|.|+ +.+.. +++|++.|++||.|.++.+++++.+ ++++|++||+|.+.++|.+|++.|||..
T Consensus 4 ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~~ 83 (105)
T 3v4m_A 4 PTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRK 83 (105)
T ss_dssp CCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCCE
Confidence 4678899998 33332 3689999999999999999988755 3689999999999999999999999999
Q ss_pred eCCeeEEEeecC
Q psy2618 162 LGSRSIRTNWST 173 (390)
Q Consensus 162 ~~g~~i~v~~~~ 173 (390)
++||.|.|.+..
T Consensus 84 f~GR~i~v~~~~ 95 (105)
T 3v4m_A 84 FANRVVVTKYCD 95 (105)
T ss_dssp ETTEECEEEEEC
T ss_pred eCCCEEEEEEeC
Confidence 999999999875
No 365
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.43 E-value=9.9e-14 Score=102.18 Aligned_cols=70 Identities=17% Similarity=0.264 Sum_probs=60.3
Q ss_pred EeCCChhccHHHHHHHh------------cccCCceEEEEeecCC--CCCeEEEEEccHHHHHHHHHHhcCeeeccceee
Q psy2618 12 VGNLDVSVTEELLCALF------------SQIGPVKGCKVIREPG--NDPYAFLEFVHHTVAATALAAMNKRVFLEKEMK 77 (390)
Q Consensus 12 v~nLp~~~~~~~l~~~f------------~~~G~v~~v~~~~~~~--~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~ 77 (390)
+.|||+++++++|++.| ++||+|.+|++.++.. ++|||||+|.+.++|.+|++.|||+.+.|+.|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45566677777777666 9999999999987653 578999999999999999999999999999999
Q ss_pred Eeec
Q psy2618 78 VNWA 81 (390)
Q Consensus 78 v~~~ 81 (390)
|.++
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9986
No 366
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.40 E-value=1.3e-13 Score=101.50 Aligned_cols=72 Identities=19% Similarity=0.478 Sum_probs=63.9
Q ss_pred EcCCCcccCHHHHHHHh------------CCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeE
Q psy2618 100 VGDLSPEIETQTLKEAF------------APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167 (390)
Q Consensus 100 v~nl~~~~~~~~l~~~f------------~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i 167 (390)
+.||++.+++++|++.| ++||.|.++.++++.. ++++|||||+|.+.++|.+|++.|+|..++||.|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~-~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLG-DHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSS-SSSEEEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCC-CCccEEEEEEECCHHHHHHHHHHHCCCEECCEEE
Confidence 56777888887777666 9999999999998754 6899999999999999999999999999999999
Q ss_pred EEeec
Q psy2618 168 RTNWS 172 (390)
Q Consensus 168 ~v~~~ 172 (390)
.|.++
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 367
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.39 E-value=8.5e-13 Score=117.38 Aligned_cols=77 Identities=19% Similarity=0.325 Sum_probs=66.9
Q ss_pred CCCCCCeEEEeC--CChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeec---cc--e
Q psy2618 3 DESQPTTLYVGN--LDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFL---EK--E 75 (390)
Q Consensus 3 ~~~~~~~l~v~n--Lp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~---g~--~ 75 (390)
.+.++++|||+| |+..+++++|+++|++||.|.+|.+.. +||||||+|++.++|++|++.|||..+. |+ .
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~---~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ 90 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP---NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKIT 90 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT---TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceE
Confidence 367899999999 578899999999999999999987753 5789999999999999999999999874 34 6
Q ss_pred eeEeecC
Q psy2618 76 MKVNWAS 82 (390)
Q Consensus 76 l~v~~~~ 82 (390)
|.+.++.
T Consensus 91 ly~~~~~ 97 (345)
T 3tht_A 91 LYLNFVE 97 (345)
T ss_dssp CEEEECS
T ss_pred EEEEEee
Confidence 7777764
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.39 E-value=1.2e-12 Score=98.31 Aligned_cols=80 Identities=21% Similarity=0.375 Sum_probs=69.3
Q ss_pred CceEEEEcCCC--ccc---CHHHHHHHhCCCCCeeEEEEeeCCC----CCCCCcEEEEEecCHHHHHHHHHHhcCceeCC
Q psy2618 94 NHYHIFVGDLS--PEI---ETQTLKEAFAPFGEISNCRIVRDPQ----TLKSKGYAFVSFVKKAEAENAITAMNGQWLGS 164 (390)
Q Consensus 94 ~~~~l~v~nl~--~~~---~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g 164 (390)
++++|+|.|+- .++ .+++|++.|++||.|.++.+++++. +++++|++||+|.+.++|.+|++.|+|..++|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 46788898883 222 3689999999999999999998864 35678999999999999999999999999999
Q ss_pred eeEEEeecC
Q psy2618 165 RSIRTNWST 173 (390)
Q Consensus 165 ~~i~v~~~~ 173 (390)
|.|.|.+..
T Consensus 99 R~i~v~~~~ 107 (118)
T 3ue2_A 99 RKVVAEVYD 107 (118)
T ss_dssp EECEEEEEC
T ss_pred cEEEEEEcC
Confidence 999999875
No 369
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.38 E-value=9.4e-13 Score=117.11 Aligned_cols=76 Identities=16% Similarity=0.306 Sum_probs=68.1
Q ss_pred CCCcceeEEcC--CCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceec---Ce--EEEEE
Q psy2618 203 SPTNCTVYCGG--FGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDIN---GH--TVKCF 275 (390)
Q Consensus 203 ~~~~~~l~v~~--l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~---g~--~i~v~ 275 (390)
..++.+|||+| |+..+++++|+++|++||.|.+|.+.++||||||+|.+.++|++|++.|||..+. |+ .|.|+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~ 94 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLN 94 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCTTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEE
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEE
Confidence 45677899999 5788999999999999999999999999999999999999999999999999873 44 67888
Q ss_pred ecc
Q psy2618 276 WGK 278 (390)
Q Consensus 276 ~~~ 278 (390)
|+.
T Consensus 95 ~~~ 97 (345)
T 3tht_A 95 FVE 97 (345)
T ss_dssp ECS
T ss_pred Eee
Confidence 874
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.37 E-value=2.6e-12 Score=95.72 Aligned_cols=77 Identities=13% Similarity=0.132 Sum_probs=66.6
Q ss_pred CCCCeEEEeCCC--hh--------ccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccc
Q psy2618 5 SQPTTLYVGNLD--VS--------VTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEK 74 (390)
Q Consensus 5 ~~~~~l~v~nLp--~~--------~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~ 74 (390)
.+++.|.|+|+= .+ --++||++.|++||.|.+|.+.++. .+|+|||+|.+.++|.+|++.|||+.+.|+
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAGK 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETTE
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 468899999992 22 2345889999999999999886653 589999999999999999999999999999
Q ss_pred eeeEeecC
Q psy2618 75 EMKVNWAS 82 (390)
Q Consensus 75 ~l~v~~~~ 82 (390)
.|.|.++.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999885
No 371
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.33 E-value=7.3e-12 Score=93.29 Aligned_cols=77 Identities=16% Similarity=0.179 Sum_probs=65.5
Q ss_pred CcceeEEcCCCCC----------CcHHHHHhhhcCCCceeEEEEecC--CCeEEEEecCHHHHHHHHHHhcCceecCeEE
Q psy2618 205 TNCTVYCGGFGKD----------LNEELVSKVFSPFGTIVDIRVFKE--KGYAFVKFTTKETATHAIESIHNTDINGHTV 272 (390)
Q Consensus 205 ~~~~l~v~~l~~~----------~~~~~l~~~f~~~g~v~~~~~~~~--~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i 272 (390)
++++|.+.|+=.. -.++||++.|++||.|+++.+.++ +|++||+|.+.++|.+|++.|||+.++||.|
T Consensus 6 ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i 85 (114)
T 3s6e_A 6 ATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAGKMI 85 (114)
T ss_dssp CCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 3456778776332 124689999999999999999877 7999999999999999999999999999999
Q ss_pred EEEecccCC
Q psy2618 273 KCFWGKESE 281 (390)
Q Consensus 273 ~v~~~~~~~ 281 (390)
.|.|+....
T Consensus 86 ~v~~~~~~~ 94 (114)
T 3s6e_A 86 TAAYVPLPT 94 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEEEcHHH
Confidence 999986543
No 372
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.33 E-value=1.8e-11 Score=88.89 Aligned_cols=65 Identities=17% Similarity=0.379 Sum_probs=57.7
Q ss_pred CCCcHHHHHhhhcCCCceeEEEEe-cCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCCC
Q psy2618 216 KDLNEELVSKVFSPFGTIVDIRVF-KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282 (390)
Q Consensus 216 ~~~~~~~l~~~f~~~g~v~~~~~~-~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~~ 282 (390)
..+++++|+++|++||.|++|.++ +.+|||||+|.+.++|.+|++.+++ +.|+.|+|.|++....
T Consensus 27 ~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 27 GGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQPQ 92 (100)
T ss_dssp CSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCCC
T ss_pred CCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCCC
Confidence 458999999999999999999998 4589999999999999999998554 6899999999887653
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.25 E-value=3e-11 Score=83.85 Aligned_cols=75 Identities=17% Similarity=0.320 Sum_probs=64.1
Q ss_pred CCCcceeEEcCCCC----CCcH----HHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEE
Q psy2618 203 SPTNCTVYCGGFGK----DLNE----ELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKC 274 (390)
Q Consensus 203 ~~~~~~l~v~~l~~----~~~~----~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v 274 (390)
.|+..+|+|...+. +..+ .+|.+.|++||.|+.+++..++ +||+|.+.++|.+|++ |+|..++||.|+|
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~--~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV 80 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK--MWVTFLEGSSALNVLS-LNGKELLNRTITI 80 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS--EEEEESSHHHHHHGGG-GTTCEETTEEEEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC--EEEEECChHHHHHHHh-cCCeEeCCeEEEE
Confidence 45666788887662 3333 6789999999999999999887 8999999999999998 9999999999999
Q ss_pred EecccC
Q psy2618 275 FWGKES 280 (390)
Q Consensus 275 ~~~~~~ 280 (390)
+++++.
T Consensus 81 ~lkt~d 86 (91)
T 2dnr_A 81 ALKSPS 86 (91)
T ss_dssp EECCCS
T ss_pred EeCCCC
Confidence 998765
No 374
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=4.3e-11 Score=89.02 Aligned_cols=76 Identities=20% Similarity=0.109 Sum_probs=66.5
Q ss_pred CCCCCCeEEEeCCChh-ccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEcc-HHHHHHHHHHhc--CeeeccceeeE
Q psy2618 3 DESQPTTLYVGNLDVS-VTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVH-HTVAATALAAMN--KRVFLEKEMKV 78 (390)
Q Consensus 3 ~~~~~~~l~v~nLp~~-~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~-~~~A~~a~~~l~--~~~~~g~~l~v 78 (390)
+...-+.|+|+||+.+ +++++|+++|+.||+|..|.+..+.. .|||+|.+ .++|..|++.++ +..+.+..+++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~---tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~ 90 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK---EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTW 90 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS---EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC---EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEE
Confidence 4567789999999999 99999999999999999999987765 79999999 899999999984 77788877777
Q ss_pred eec
Q psy2618 79 NWA 81 (390)
Q Consensus 79 ~~~ 81 (390)
+..
T Consensus 91 evL 93 (121)
T 1owx_A 91 EVL 93 (121)
T ss_dssp EEC
T ss_pred EEC
Confidence 644
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.21 E-value=5.5e-11 Score=88.45 Aligned_cols=77 Identities=17% Similarity=0.152 Sum_probs=69.1
Q ss_pred CCCCcceeEEcCCCCC-CcHHHHHhhhcCCCceeEEEEecCCCeEEEEecC-HHHHHHHHHHhc--CceecCeEEEEEec
Q psy2618 202 SSPTNCTVYCGGFGKD-LNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTT-KETATHAIESIH--NTDINGHTVKCFWG 277 (390)
Q Consensus 202 ~~~~~~~l~v~~l~~~-~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~-~~~a~~a~~~l~--~~~~~g~~i~v~~~ 277 (390)
..+..+.|+|+||+.. ++.++|+++|+.||.|..|.+.++...|||+|.+ .++|.+|+..++ +..|+|..+++...
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL 93 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVL 93 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCSEEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEEC
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCEEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEEC
Confidence 3456789999999999 9999999999999999999999999999999999 899999999994 67789988888654
Q ss_pred c
Q psy2618 278 K 278 (390)
Q Consensus 278 ~ 278 (390)
.
T Consensus 94 ~ 94 (121)
T 1owx_A 94 E 94 (121)
T ss_dssp C
T ss_pred C
Confidence 3
No 376
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.17 E-value=5.9e-11 Score=82.35 Aligned_cols=74 Identities=18% Similarity=0.284 Sum_probs=63.6
Q ss_pred CCCCCeEEEeCCCh----hc-c---HHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccce
Q psy2618 4 ESQPTTLYVGNLDV----SV-T---EELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKE 75 (390)
Q Consensus 4 ~~~~~~l~v~nLp~----~~-~---~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~ 75 (390)
-++..||+|.-++. +. + ..+|.+.|+.||.|.+++++.++ +||+|.+.++|.+|++ |||..+.|+.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~-----~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK-----MWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS-----EEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC-----EEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 35778899988762 22 3 25899999999999999998864 9999999999999998 9999999999
Q ss_pred eeEeecCC
Q psy2618 76 MKVNWASS 83 (390)
Q Consensus 76 l~v~~~~~ 83 (390)
|+|+.+++
T Consensus 78 LkV~lkt~ 85 (91)
T 2dnr_A 78 ITIALKSP 85 (91)
T ss_dssp EEEEECCC
T ss_pred EEEEeCCC
Confidence 99998875
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=1.4e-10 Score=80.77 Aligned_cols=76 Identities=18% Similarity=0.276 Sum_probs=64.9
Q ss_pred cCCCCCcceeEEcCCCCC-----CcH----HHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCe
Q psy2618 200 NQSSPTNCTVYCGGFGKD-----LNE----ELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGH 270 (390)
Q Consensus 200 ~~~~~~~~~l~v~~l~~~-----~~~----~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~ 270 (390)
....|+..+|+|..++.. ..+ .+|.+.|++||.|+.+++..++ +||+|.+.++|.+|++ |+|..++||
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~--~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ--MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE--EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc--EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 345677788999988642 222 5688999999999999999887 9999999999999999 999999999
Q ss_pred EEEEEecc
Q psy2618 271 TVKCFWGK 278 (390)
Q Consensus 271 ~i~v~~~~ 278 (390)
.|+|++..
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99998754
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.06 E-value=2.7e-10 Score=79.37 Aligned_cols=73 Identities=12% Similarity=0.143 Sum_probs=62.7
Q ss_pred CCCCCeEEEeCCChh------cc---HHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccc
Q psy2618 4 ESQPTTLYVGNLDVS------VT---EELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEK 74 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~------~~---~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~ 74 (390)
-++..||+|.-++.+ .+ ..+|.+.|+.||.|..++++.++ +||+|.+.++|.+||+ |++..+.|+
T Consensus 12 GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ldG~~v~Gr 85 (95)
T 1ufw_A 12 GPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLD-VDGMKVKGR 85 (95)
T ss_dssp CCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHH-GGGSEETTE
T ss_pred CCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHh-cCCeeeCCe
Confidence 367889999988632 22 14799999999999999998874 9999999999999998 999999999
Q ss_pred eeeEeecC
Q psy2618 75 EMKVNWAS 82 (390)
Q Consensus 75 ~l~v~~~~ 82 (390)
.|+|+...
T Consensus 86 ~L~V~~k~ 93 (95)
T 1ufw_A 86 AVKISGPS 93 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEeccC
Confidence 99999654
No 379
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.75 E-value=4.5e-08 Score=69.41 Aligned_cols=71 Identities=10% Similarity=0.152 Sum_probs=67.0
Q ss_pred cceeEEcCCCCCCcHHHHHhhhcCC-----CceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEe
Q psy2618 206 NCTVYCGGFGKDLNEELVSKVFSPF-----GTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFW 276 (390)
Q Consensus 206 ~~~l~v~~l~~~~~~~~l~~~f~~~-----g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~ 276 (390)
.++|-+-+||..+++..|+.+.+++ |.++++.+..+-+-|+|+|.|...|.+|.-.|+|.+|.|+.|+|.-
T Consensus 21 ~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gT 96 (117)
T 2l9w_A 21 ETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFNGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGT 96 (117)
T ss_dssp TSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTTEEEEECSCHHHHHHHHHHHSSEEETTEEEEEEC
T ss_pred CcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCCceEEEEccchhhHHHHhhcCCeeecCeEEEecC
Confidence 4568888999999999999999999 9999999999999999999999999999999999999999999853
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.73 E-value=1.8e-08 Score=85.26 Aligned_cols=63 Identities=17% Similarity=0.216 Sum_probs=57.1
Q ss_pred CcHHHHHhhhcCCCceeEEEEe----------cCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 218 LNEELVSKVFSPFGTIVDIRVF----------KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 218 ~~~~~l~~~f~~~g~v~~~~~~----------~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
-.+++|++.|++||.|.++.+. +.+|++||+|.+.++|.+|++.|||+.++||.|.+.|....
T Consensus 141 e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~~~ 213 (222)
T 3dxb_A 141 DLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQE 213 (222)
T ss_dssp THHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECCHH
T ss_pred HHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcCHH
Confidence 3578999999999999999998 33689999999999999999999999999999999997643
No 381
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.72 E-value=2.1e-08 Score=84.75 Aligned_cols=66 Identities=24% Similarity=0.402 Sum_probs=59.8
Q ss_pred CHHHHHHHhCCCCCeeEEEEeeCCC----CCCCCcEEEEEecCHHHHHHHHHHhcCceeCCeeEEEeecC
Q psy2618 108 ETQTLKEAFAPFGEISNCRIVRDPQ----TLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173 (390)
Q Consensus 108 ~~~~l~~~f~~~G~i~~~~~~~~~~----~g~~~g~afv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~ 173 (390)
.+++|++.|++||.|.++.+.++.. +++++|++||+|.+.++|.+|++.|+|..+.||.|.+.+..
T Consensus 142 ~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~gr~i~~~~~~ 211 (222)
T 3dxb_A 142 LEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYD 211 (222)
T ss_dssp HHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred HHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECCeEEEEEEcC
Confidence 5678999999999999999985543 45889999999999999999999999999999999999875
No 382
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.67 E-value=1.3e-07 Score=66.64 Aligned_cols=90 Identities=21% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhccc-----CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeE
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQI-----GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKV 78 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~-----G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v 78 (390)
.+-.++|.|.|||.+++++.|.-+|+.- |+|.+|+... +-|+|+|.+.+.|++.|++ ..+.|.+.+|.|
T Consensus 5 ~~~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~-----~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV 78 (104)
T 2dhx_A 5 SSGGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG-----CGGVLTFREPADAERVLAQ-ADHELHGAQLSL 78 (104)
T ss_dssp CCCCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET-----TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEE
T ss_pred ccCccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC-----CcEEEEEcChHHHHHHhcC-CcceecCeEEEE
Confidence 4567899999999999999999999872 6788887754 3799999999999999973 477889999999
Q ss_pred eecCCCCCCCCCCCCCceEEEEcCCCcccC
Q psy2618 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIE 108 (390)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~ 108 (390)
..... ....+|++.||++.++
T Consensus 79 ~P~~~---------~~~~r~ll~gl~~~t~ 99 (104)
T 2dhx_A 79 RPAPP---------RAPARLLLQGLPPGTS 99 (104)
T ss_dssp EECCC---------CCCCCCCCCSCCCCCC
T ss_pred EcCCC---------CCcceEeeecCCCCCC
Confidence 87543 3457789999988765
No 383
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.43 E-value=1.3e-06 Score=61.95 Aligned_cols=72 Identities=18% Similarity=0.254 Sum_probs=65.7
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhccc-----CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQI-----GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~-----G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
+..++|-|-|||-.++++.|+.+++.+ |.|..+.+..|-. =|+|+|+|...|-+|.-.|+|..|.|++|++.
T Consensus 19 ~~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~---GAivef~d~~~AgKasLaL~G~ef~gr~Lr~g 95 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN---GAIIIFRDSKFAAKMLMILNGSQFQGKVIRSG 95 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT---EEEEECSCHHHHHHHHHHHSSEEETTEEEEEE
T ss_pred cCCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC---ceEEEEccchhhHHHHhhcCCeeecCeEEEec
Confidence 358999999999999999999999999 9999998876643 69999999999999999999999999999887
No 384
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.36 E-value=2e-06 Score=61.00 Aligned_cols=75 Identities=21% Similarity=0.218 Sum_probs=65.6
Q ss_pred CCCeEEEeCCChhc-c----HHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 6 QPTTLYVGNLDVSV-T----EELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 6 ~~~~l~v~nLp~~~-~----~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
-.++|+|+||+.++ . .+.++++|..|+++.++...++-+ =..|.|.+.++|.+|...|++..+.|++++|.+
T Consensus 4 ~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR---Rirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YF 80 (104)
T 1wey_A 4 GSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---RVRINFSNPLSAADARLRLHKTEFLGKEMKLYF 80 (104)
T ss_dssp CCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT---EEEEECSSTTHHHHHHHTSTTSEETTEECEEEC
T ss_pred CCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce---EEEEEeCChHHHHHHHHHhccceecCceeEEEe
Confidence 35789999999765 2 257799999999999988887765 589999999999999999999999999999999
Q ss_pred cCC
Q psy2618 81 ASS 83 (390)
Q Consensus 81 ~~~ 83 (390)
+..
T Consensus 81 gq~ 83 (104)
T 1wey_A 81 AQT 83 (104)
T ss_dssp CCC
T ss_pred cCC
Confidence 974
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.24 E-value=8.2e-06 Score=57.89 Aligned_cols=75 Identities=15% Similarity=0.234 Sum_probs=66.4
Q ss_pred ceeEEcCCCCCCc-----HHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccCC
Q psy2618 207 CTVYCGGFGKDLN-----EELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281 (390)
Q Consensus 207 ~~l~v~~l~~~~~-----~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~~ 281 (390)
++|+|.||+.++- .+.++++|..|+++......+.-.-..|.|.+.++|.+|-..||+..+.|+.++|-|+.+..
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~~~ 85 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLH 85 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTTEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCCSS
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcceEEEEEeCChHHHHHHHHHhccceecCceeEEEecCCCC
Confidence 4699999988652 26789999999999999999997788999999999999999999999999999999998543
No 386
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.14 E-value=8e-05 Score=52.54 Aligned_cols=79 Identities=13% Similarity=0.186 Sum_probs=64.2
Q ss_pred CcceeEEcCCCCCCcHHHHHhhhcC-----CCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEeccc
Q psy2618 205 TNCTVYCGGFGKDLNEELVSKVFSP-----FGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKE 279 (390)
Q Consensus 205 ~~~~l~v~~l~~~~~~~~l~~~f~~-----~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~ 279 (390)
..++|.|.|||..++++.|.-+|+. -|.|.++.... +.|+|+|.+.+.|++.++. ....+.+..|.|.-..+
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~--~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~~ 83 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG--CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAPP 83 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET--TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECCC
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC--CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCCC
Confidence 4567999999999999999999987 25899998876 8999999999999999884 34568899999977655
Q ss_pred CCCCCCC
Q psy2618 280 SENNSTL 286 (390)
Q Consensus 280 ~~~~~~~ 286 (390)
.....-.
T Consensus 84 ~~~~r~l 90 (104)
T 2dhx_A 84 RAPARLL 90 (104)
T ss_dssp CCCCCCC
T ss_pred CCcceEe
Confidence 5544333
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=98.11 E-value=1.5e-05 Score=55.69 Aligned_cols=66 Identities=14% Similarity=0.170 Sum_probs=56.2
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCC-----CeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND-----PYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~-----g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
++|.||+||+..+++++.+.++.+..+.-......+.+. .-|||.|++.+++....+.++|..+.+
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 689999999999999999999999887666666554322 379999999999999999999998764
No 388
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.76 E-value=0.00011 Score=53.70 Aligned_cols=73 Identities=16% Similarity=0.166 Sum_probs=59.1
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeecc-ceeeEeecC
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLE-KEMKVNWAS 82 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g-~~l~v~~~~ 82 (390)
...+-|.|-+.|+.. ...|.+.|+.||.|++... .....+..|+|.+..+|++||.+ ||..+.+ --|-|.+..
T Consensus 22 ~~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~---~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 22 LDDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVM---SNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEE---CSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCCCEEEEECCCHHH-HHHHHHHHHhhCcEEEecc---CCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 357789999999984 6689999999999998876 23456999999999999999975 9998875 456666543
No 389
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.68 E-value=0.00013 Score=50.79 Aligned_cols=55 Identities=20% Similarity=0.249 Sum_probs=45.7
Q ss_pred CCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~ 67 (390)
.+.++| ++|++....||.++|+.||.|. |+-+.|. .|||-|.+++.|..|++.++
T Consensus 16 ~HVf~l-~FP~ewKt~DI~~lFs~fggv~-I~WidDT----sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT----SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHHHHHTTTCSCC-CEEEETT----EEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHHHHhhccCCEE-EEEEcCC----eEEEEecCHHHHHHHHHhcc
Confidence 344555 9999999999999999999764 6666654 69999999999999998764
No 390
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.57 E-value=0.0001 Score=51.65 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=51.8
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCC-----CCeEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN-----DPYAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~-----~g~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
..+.+|.||.||+..|++++.+.++.+-++.....+..+.+ -.-|||.|++.++.....+..+|..+.+
T Consensus 7 ~~~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 7 HHSHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred ccceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35678999999999999999888877644322222222211 1369999999999999999999998754
No 391
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.50 E-value=0.00012 Score=51.18 Aligned_cols=54 Identities=20% Similarity=0.241 Sum_probs=45.3
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~ 67 (390)
+.++| ++|.+....||.++|+.||.| .|+-+.|. .|||-|.+++.|..|++.++
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv-~I~WidDT----sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDDT----SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEE-EEEEEETT----EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCE-EEEEEcCC----eEEEEecCHHHHHHHHHhcc
Confidence 34556 999999999999999999965 36666654 69999999999999999764
No 392
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.49 E-value=0.0006 Score=47.57 Aligned_cols=68 Identities=15% Similarity=0.259 Sum_probs=56.1
Q ss_pred eEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCC--CCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLK--SKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 96 ~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
++|.|++||+.+|++++.+.+.....+.-...+....+.. .-.-|||.|.+.+++..-.+.++|+.+.
T Consensus 2 ~KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~ 71 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFL 71 (91)
T ss_dssp CEEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEE
T ss_pred cEEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEE
Confidence 4789999999999999999999998876666665544332 2356999999999999999999998763
No 393
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.40 E-value=0.00053 Score=50.79 Aligned_cols=76 Identities=18% Similarity=0.242 Sum_probs=55.9
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceE-EEEee--------------cC--CCCCeEEEEEccHHHHHHHHHHhc
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKG-CKVIR--------------EP--GNDPYAFLEFVHHTVAATALAAMN 67 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~-v~~~~--------------~~--~~~g~afV~F~~~~~A~~a~~~l~ 67 (390)
...+-|.|-+.|++. ...|.+.|++||.|++ +...+ -. ....+..|+|++..+|.+||.+ |
T Consensus 5 ~~e~~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~~-N 82 (132)
T 3p3d_A 5 NGELAILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALLE-N 82 (132)
T ss_dssp ---CEEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHTT-T
T ss_pred cCceEEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHHh-C
Confidence 456778888998874 4588999999999976 21110 00 1346999999999999999975 9
Q ss_pred CeeeccceeeEeecC
Q psy2618 68 KRVFLEKEMKVNWAS 82 (390)
Q Consensus 68 ~~~~~g~~l~v~~~~ 82 (390)
|..+.|.-|-|.+..
T Consensus 83 G~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 83 GAVFNGVLLGVIPYT 97 (132)
T ss_dssp TCEETTEECEEEECC
T ss_pred CeEeCcEEEEEEECC
Confidence 999999877777553
No 394
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.28 E-value=0.0017 Score=47.49 Aligned_cols=71 Identities=13% Similarity=0.156 Sum_probs=59.5
Q ss_pred cceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecC-eEEEEEecc
Q psy2618 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDING-HTVKCFWGK 278 (390)
Q Consensus 206 ~~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g-~~i~v~~~~ 278 (390)
.+-|.|-+.+... ...|...|++||.|++...........|+|.+..+|++|+.. ||..++| -.|-|....
T Consensus 24 ~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~~~NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~ 95 (119)
T 1wwh_A 24 DTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCI 95 (119)
T ss_dssp GGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECSSSSEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECC
T ss_pred CCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCCCCCeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECC
Confidence 4568888999885 466777889999999999866788999999999999999994 9998874 778887754
No 395
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.09 E-value=0.0032 Score=43.86 Aligned_cols=58 Identities=24% Similarity=0.377 Sum_probs=46.7
Q ss_pred CCCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhc
Q psy2618 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158 (390)
Q Consensus 92 ~~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~ 158 (390)
....+.++| +.|.++...||.++|+.||.| .|..+.| .-|||.|.+++.|..|+..+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv-~I~WidD-------TsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNI-QISWIDD-------TSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSC-CCEEEET-------TEEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCE-EEEEEcC-------CeEEEEecCHHHHHHHHHhcc
Confidence 344556666 999999999999999999965 4555554 259999999999999998764
No 396
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=96.75 E-value=0.0023 Score=44.71 Aligned_cols=54 Identities=22% Similarity=0.350 Sum_probs=45.2
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhc
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIH 263 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~ 263 (390)
+.++| ++|.++...||.++|++|| -..|..+. -..|||.|.+.+.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fg-gv~I~Wid-DTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFG-NIQISWID-DTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSE-EEEEEEEE-TTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccC-CEEEEEEc-CCeEEEEecCHHHHHHHHHhcc
Confidence 34666 9999999999999999999 44466654 4689999999999999999774
No 397
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.70 E-value=0.00072 Score=62.27 Aligned_cols=56 Identities=18% Similarity=0.274 Sum_probs=42.7
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHH
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALA 64 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~ 64 (390)
..|+|+|. .|..+++.+|.++|++||+|.++.+-+++ +-||.|||++.+++..+++
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~--g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESF--GLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSS--SEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccC--CeEEEEEeCCHHHHHHHHh
Confidence 35889997 79999999999999999999999876543 3499999999999998765
No 398
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=96.65 E-value=0.0029 Score=44.37 Aligned_cols=69 Identities=13% Similarity=0.190 Sum_probs=50.7
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCC--CCcEEEEEecCHHHHHHHHHHhcCceeC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLK--SKGYAFVSFVKKAEAENAITAMNGQWLG 163 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~--~~g~afv~f~~~~~a~~a~~~l~~~~~~ 163 (390)
+-+|.|+.||+.+|++++.+.+..+-.+.-...+....+.+ .-..|||.|.+.++...-.+..+|..+.
T Consensus 9 ~~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~ 79 (97)
T 2l08_A 9 SHMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFL 79 (97)
T ss_dssp CCCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEE
T ss_pred ceeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEE
Confidence 46799999999999999999888765443333332222211 1245899999999999999999998763
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.07 E-value=0.0081 Score=44.52 Aligned_cols=71 Identities=17% Similarity=0.313 Sum_probs=54.3
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeE-EEEec-------------------CCCeEEEEecCHHHHHHHHHHhcCce
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVD-IRVFK-------------------EKGYAFVKFTTKETATHAIESIHNTD 266 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~-~~~~~-------------------~~g~~fv~f~~~~~a~~a~~~l~~~~ 266 (390)
+-|.|-+.|.... ..+.+.|++||.|++ ..+.+ ......|+|++..+|.+|+. -||..
T Consensus 8 ~~VtVFGFp~~~~-~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~i 85 (132)
T 3p3d_A 8 LAILVFGYPETMA-NQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAV 85 (132)
T ss_dssp CEEEEECCCGGGH-HHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCE
T ss_pred eEEEEEecCHHHH-HHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeE
Confidence 3477888877655 456678899999866 22211 25678999999999999999 59999
Q ss_pred ecCeEEEEEeccc
Q psy2618 267 INGHTVKCFWGKE 279 (390)
Q Consensus 267 ~~g~~i~v~~~~~ 279 (390)
++|..|-|...++
T Consensus 86 i~G~mIGV~Py~~ 98 (132)
T 3p3d_A 86 FNGVLLGVIPYTK 98 (132)
T ss_dssp ETTEECEEEECCH
T ss_pred eCcEEEEEEECCH
Confidence 9999888877654
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=95.39 E-value=0.0074 Score=55.63 Aligned_cols=54 Identities=28% Similarity=0.364 Sum_probs=42.1
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCC-eEEEEecCHHHHHHHHHH
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG-YAFVKFTTKETATHAIES 261 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g-~~fv~f~~~~~a~~a~~~ 261 (390)
+.|+|. .+..+++.+|.++|++||.|.++.+.+++| |+.|+|.+.+++..++..
T Consensus 54 rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~~ 108 (464)
T 3pq1_A 54 RTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQNG 108 (464)
T ss_dssp TEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHSS
T ss_pred ceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHhc
Confidence 469997 688899999999999999999999998876 899999999988876543
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=90.52 E-value=0.47 Score=44.61 Aligned_cols=55 Identities=20% Similarity=0.216 Sum_probs=44.3
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcC
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNK 68 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~ 68 (390)
..++|+ +|......+|.++|+.||.| +|+-+.+. .|||.|.+.+.|..++++++.
T Consensus 441 ~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~widdt----~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 441 HVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWIDDT----SAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECSSS----EEEEECSCHHHHHHHHHHHTT
T ss_pred cEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEcCC----eEEEEECCHHHHHHHHHHHHh
Confidence 455565 88888899999999999965 46554433 699999999999999998754
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=83.23 E-value=3.6 Score=38.64 Aligned_cols=56 Identities=23% Similarity=0.332 Sum_probs=44.5
Q ss_pred ceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcC
Q psy2618 95 HYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159 (390)
Q Consensus 95 ~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 159 (390)
+..++|+ ++..|...+|.++|+.||.+ .|..+- ...|||.|.+.+.|..+++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v-~V~wid-------dt~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNI-QISWID-------DTSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCC-EEEECS-------SSEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCE-EEEEEc-------CCeEEEEECCHHHHHHHHHHHHh
Confidence 4566666 88899999999999999964 444432 34699999999999999998763
No 403
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=71.45 E-value=0.88 Score=42.06 Aligned_cols=10 Identities=40% Similarity=0.434 Sum_probs=5.6
Q ss_pred CHHHHHHHHH
Q psy2618 251 TKETATHAIE 260 (390)
Q Consensus 251 ~~~~a~~a~~ 260 (390)
+.+.|.+.++
T Consensus 272 ~~e~A~~fl~ 281 (449)
T 3iot_A 272 NKELAKEFLE 281 (449)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 4556666664
No 404
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=70.58 E-value=21 Score=23.97 Aligned_cols=69 Identities=13% Similarity=0.181 Sum_probs=52.4
Q ss_pred CCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 5 ~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
...|-|.|-|||..+-..++.-..+..|----|..+ .|.|.+.|.+.++-..|+.+|-+. ++.++.++.
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi-----dgqamirfqnsdeqrlaiqkllnh--nnnklqiei 78 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI-----DGQAMIRFQNSDEQRLAIQKLLNH--NNNKLQIEI 78 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC-----SSCEEEEESSHHHHHHHHHHHEET--TTTEEEEEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee-----cCeeEEEecCChHHHHHHHHHHhc--CCCEEEEEE
Confidence 356889999999999999999998888854445443 347999999999999999876332 345555553
No 405
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=60.08 E-value=8.5 Score=29.93 Aligned_cols=50 Identities=14% Similarity=0.114 Sum_probs=36.7
Q ss_pred eEEEeCCChh---------ccHHHHHHHh--cccCCceEEEEeecCC-CCCeEEEEEccHHHH
Q psy2618 9 TLYVGNLDVS---------VTEELLCALF--SQIGPVKGCKVIREPG-NDPYAFLEFVHHTVA 59 (390)
Q Consensus 9 ~l~v~nLp~~---------~~~~~l~~~f--~~~G~v~~v~~~~~~~-~~g~afV~F~~~~~A 59 (390)
++.|-|+|.. .+..+|++.| +.|.++. |+.+.+.. +.|+|.|+|.+.-.-
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~k-v~~l~~~~Gh~g~aIv~F~~dw~G 75 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTR-VRPLWNYLGHSGTAIVEFNKDWNG 75 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSE-EEEEECSSBEEEEEEEECCSSHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCce-eEecccCCCCceeEEEEecCChHH
Confidence 4667888872 3446899977 9999865 66665554 678999999986553
No 406
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=57.53 E-value=11 Score=24.65 Aligned_cols=67 Identities=18% Similarity=0.262 Sum_probs=40.0
Q ss_pred eEEEeCCC--hhccHHHHHHHhcccCC-----ceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 9 TLYVGNLD--VSVTEELLCALFSQIGP-----VKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 9 ~l~v~nLp--~~~~~~~l~~~f~~~G~-----v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+++| |+- ..+...+|..++..-+. |-.+.+.. .|.||+-.... |..+++.|++..+.|+.+.++.+
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d-----~~s~v~v~~~~-~~~~~~~l~~~~i~g~~~~v~~~ 74 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD-----NASYVEILNGK-GPHVLKVMKNTTVKGKQLKVNKA 74 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS-----SCEEEEECTTC-HHHHHHHHTTCCC---CCCEEEC
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC-----CcEEEEECHHH-HHHHHHHhccccCcCceEEEEEC
Confidence 4555 232 33666677777765443 34455432 27899987654 77888889999999999998865
Q ss_pred C
Q psy2618 82 S 82 (390)
Q Consensus 82 ~ 82 (390)
.
T Consensus 75 ~ 75 (76)
T 2g0c_A 75 N 75 (76)
T ss_dssp C
T ss_pred C
Confidence 3
No 407
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A
Probab=49.52 E-value=3.5 Score=37.96 Aligned_cols=9 Identities=0% Similarity=0.294 Sum_probs=4.0
Q ss_pred CCCeEEEeC
Q psy2618 6 QPTTLYVGN 14 (390)
Q Consensus 6 ~~~~l~v~n 14 (390)
..-+||..+
T Consensus 5 ~tltvw~~~ 13 (449)
T 3iot_A 5 GKLVIWING 13 (449)
T ss_dssp SSEEEECCT
T ss_pred ceEEEEeCC
Confidence 344555433
No 408
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=47.84 E-value=40 Score=21.28 Aligned_cols=56 Identities=13% Similarity=-0.044 Sum_probs=42.3
Q ss_pred CCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHH
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAA 65 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~ 65 (390)
...++.|.++.=.--...|++.++. ..|.++.+... .+.+.|+|.+.++...+++.
T Consensus 5 ~~~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~---~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 5 EKIVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLN---EAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSS---EEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEcc---CCEEEEEECCHHHHHHHHHH
Confidence 3467899999877777899999998 78887876432 33688888867777777765
No 409
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=42.88 E-value=61 Score=22.48 Aligned_cols=67 Identities=16% Similarity=0.211 Sum_probs=45.0
Q ss_pred EcCCCCCCcHHHHHhhh-cCCCceeEEEEecCCCeEEEEecCHHHHHHHHHHhcCceecCeEEEEEecccC
Q psy2618 211 CGGFGKDLNEELVSKVF-SPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280 (390)
Q Consensus 211 v~~l~~~~~~~~l~~~f-~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~l~~~~~~g~~i~v~~~~~~ 280 (390)
|-.++..+.-++|..-. +.||.-.++... .....|-..+.++-.+|++.|+.. ..-+.|+|-...++
T Consensus 21 Ii~f~RPv~f~eL~~Kv~~~fGq~ldL~y~--n~EllIpl~sQeDLDkaIellDrs-s~~kSLrIlL~~~~ 88 (103)
T 2cu1_A 21 ILQFPRPVKLEDLRSKAKIAFGQSMDLHYT--NNELVIPLTTQDDLDKAVELLDRS-IHMKSLKILLVING 88 (103)
T ss_dssp EEEEESSCCHHHHHHHHHHHHSSCEEEEEC--SSSSCEECCSHHHHHHHHHHHHHC-SSCCSEEEEEEECC
T ss_pred EEeccCCccHHHHHHHHHHHhCCeeeEEEe--cceEEEeccCHHHHHHHHHHHccC-CcccceEEEEecCC
Confidence 33456677777776554 457888888776 335678888999999999987654 33344555444444
No 410
>4a4j_A Pacszia, cation-transporting ATPase PACS; hydrolase, copper homeostasis, zinc homeostasis, ATX1, metal-transporting atpases; 1.25A {Synechocystis} PDB: 4a48_A 2gcf_A 2xmw_A
Probab=40.83 E-value=61 Score=19.82 Aligned_cols=55 Identities=13% Similarity=0.192 Sum_probs=39.5
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEcc---HHHHHHHHHH
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVH---HTVAATALAA 65 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~---~~~A~~a~~~ 65 (390)
.++.|.|+.=..-...|++.+.....|.++.+... .+.+.|+|.+ .++..++++.
T Consensus 4 ~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~i~~~i~~ 61 (69)
T 4a4j_A 4 INLQLEGMDCTSCASSIERAIAKVPGVQSCQVNFA---LEQAVVSYHGETTPQILTDAVER 61 (69)
T ss_dssp EEEEEESCCSHHHHHHHHHHHHTSTTEEEEEEETT---TTEEEEEECTTCCHHHHHHHHHH
T ss_pred EEEEECCeecHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCHHHHHHHHHH
Confidence 46889999877778899999999888888877543 3478888853 3445555543
No 411
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=39.73 E-value=62 Score=20.27 Aligned_cols=54 Identities=11% Similarity=-0.013 Sum_probs=42.5
Q ss_pred ceeEEcCCCCCCcHHHHHhhhcCCCceeEEEEecCCCeEEEEecCHHHHHHHHHH
Q psy2618 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIES 261 (390)
Q Consensus 207 ~~l~v~~l~~~~~~~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~~~~~a~~a~~~ 261 (390)
.++.|.++.-.--...|...+.. ..|..+.+....+.+.|.|.+.++..++++.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~~~~~v~~~~~~~i~~~i~~ 60 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNEAVVAGNKEDVDKYIKAVEA 60 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSEEEEEEEGGGHHHHHHHHHH
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccCCEEEEEECCHHHHHHHHHH
Confidence 35788888877777888999988 8899898877778888998855566666664
No 412
>2w7a_A LINE-1 ORF1P; RNA-binding protein; HET: MSE; 1.40A {Homo sapiens}
Probab=38.74 E-value=77 Score=22.08 Aligned_cols=74 Identities=9% Similarity=0.074 Sum_probs=42.0
Q ss_pred CCCeEEEeCCChhccHHH--HHHHhcc--------cC-----CceEEEEeecCC-----CCCeEEEEEccHHHHHHHHH-
Q psy2618 6 QPTTLYVGNLDVSVTEEL--LCALFSQ--------IG-----PVKGCKVIREPG-----NDPYAFLEFVHHTVAATALA- 64 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~--l~~~f~~--------~G-----~v~~v~~~~~~~-----~~g~afV~F~~~~~A~~a~~- 64 (390)
-++.|+|.+||....+.. +..+|.. .+ .|.++.-...+. .-....|.|....+=++.|+
T Consensus 2 Rr~NirIiGvPE~e~~k~~~~e~lf~eIi~enfPnL~ke~~i~v~ea~Rsp~~~~~kr~tPRhIIvK~~~~~~KErILka 81 (100)
T 2w7a_A 2 AMGNLRLIGVPESDVENGTKLENTLQDIIQENFPNLARQANVQIQEIQRTPQRYSSRRATPRHIIVRFTKVEMKEKMLRA 81 (100)
T ss_dssp CTTEEEEECCCCCTTCCHHHHHHHHHHHHHHHCHHHHHHTCCCEEEEEEESSSCCSSCCSCCEEEEEESCHHHHHHHHHH
T ss_pred CccceeEEeCCCCccccchhHHHHHHHHHHHHCcCcccchhhhhhhhhcCCCccCCCCCCCCeEEEEecccccHHHHHHH
Confidence 367899999998633222 4444432 22 133333322221 12377888877665444444
Q ss_pred --HhcCeeeccceeeEe
Q psy2618 65 --AMNKRVFLEKEMKVN 79 (390)
Q Consensus 65 --~l~~~~~~g~~l~v~ 79 (390)
......+.|++|.+.
T Consensus 82 ar~k~~vtykg~pirls 98 (100)
T 2w7a_A 82 AREKGRVTLKGKPIRLT 98 (100)
T ss_dssp HHHHCCEEETTEEEEEE
T ss_pred HHHhCceeeCCcceeec
Confidence 344567889988876
No 413
>2inr_A DNA topoisomerase 4 subunit A; topoisomerase II fold; HET: DNA; 2.80A {Staphylococcus aureus}
Probab=38.73 E-value=66 Score=29.94 Aligned_cols=95 Identities=8% Similarity=0.173 Sum_probs=50.6
Q ss_pred CCeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecCCC-CC-eEEEEEccHHHHHHHHHHhcCeeeccceeeEeec
Q psy2618 7 PTTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREPGN-DP-YAFLEFVHHTVAATALAAMNKRVFLEKEMKVNWA 81 (390)
Q Consensus 7 ~~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~~~-~g-~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~~ 81 (390)
+.+|.|+-||..++.+.|.+..... +.|..|.-++|.+. .| ---|+++....++..++.|-... .|...++
T Consensus 275 ~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~e~vl~~L~k~t----~Lq~s~~ 350 (514)
T 2inr_A 275 RKQLIITEIPYEVNKSSLVKRIDELRADKKVDGIVEVRDETDRTGLRIAIELKKDVNSESIKNYLYKNS----DLQISYN 350 (514)
T ss_dssp CCEEEEEECCTTCCHHHHHHHHHHHHHHTSCC---CEEECCBTTBCCEEEEC------CHHHHHHTTSS----TTEEEEE
T ss_pred ccEEEEEecCceeeHHHHHHHHHHHHhcCCcCccchhhhcCCCCceEEEEEECCCcCHHHHHHHHHHhc----Cceeeee
Confidence 4789999999999999887766543 33333333333332 23 34567777666666665544332 2222222
Q ss_pred CCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhC
Q psy2618 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117 (390)
Q Consensus 82 ~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 117 (390)
. +..+++.|.|...+-.+|.+.|-
T Consensus 351 ~------------Nm~al~~g~p~~~~l~~iL~~f~ 374 (514)
T 2inr_A 351 F------------NMVAISDGRPKLMGIRQIIDSYL 374 (514)
T ss_dssp E------------ECEEEETTEEEECCHHHHHHHHH
T ss_pred e------------eEEEeeCCEEEECCHHHHHHHHH
Confidence 1 13455778887777777666553
No 414
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=38.45 E-value=54 Score=22.16 Aligned_cols=55 Identities=15% Similarity=0.152 Sum_probs=38.7
Q ss_pred EEeCCChhccHHHHHHHhccc-C-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHH
Q psy2618 11 YVGNLDVSVTEELLCALFSQI-G-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAA 65 (390)
Q Consensus 11 ~v~nLp~~~~~~~l~~~f~~~-G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~ 65 (390)
++-.+...++..+|++.++.+ | .|.+|....-++...-|||++....+|.....+
T Consensus 26 ~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNTl~~~~~~KKA~V~L~~~~~a~dva~k 82 (86)
T 3j21_T 26 LTFIVDRRATKQDIKRAVEEIFNVKVEKVNTLITPRGEKKAYVKLKPEYSASEVAAR 82 (86)
T ss_dssp EEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEECTTSCEEEEEEECTTSCHHHHHHH
T ss_pred EEEEEcCCCCHHHHHHHHHHHcCCCceEEEEeEcCCCceEEEEEcCCCCcHHHHHHh
Confidence 333456788999998887764 3 466666655444444799999999888877654
No 415
>3lpe_A Putative transcription antitermination protein NU; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} PDB: 3ewg_A
Probab=32.94 E-value=79 Score=21.50 Aligned_cols=24 Identities=13% Similarity=0.156 Sum_probs=20.0
Q ss_pred CCCeEEEEEccHHHHHHHHHHhcC
Q psy2618 45 NDPYAFLEFVHHTVAATALAAMNK 68 (390)
Q Consensus 45 ~~g~afV~F~~~~~A~~a~~~l~~ 68 (390)
-.||.||++...++...+++...+
T Consensus 49 fPGYVfVe~~~~~~~~~~I~~t~g 72 (92)
T 3lpe_A 49 LKGYVLVEAETKGDVEELIKGMPR 72 (92)
T ss_dssp STTEEEEEESSHHHHHHHHTTCTT
T ss_pred cCCEEEEEEecchhHHHHHHCCCC
Confidence 578999999999998888875544
No 416
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=31.84 E-value=1.2e+02 Score=20.40 Aligned_cols=59 Identities=17% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCceEEEEcCCCcccCHHHHHHHhCCCCCeeEEEEeeCCCCCCCCcEEEEEecCHHHHHHHHHHhcC
Q psy2618 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159 (390)
Q Consensus 93 ~~~~~l~v~nl~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~a~~~l~~ 159 (390)
...+.+.|-|+|..+-..++.-.....|--.-|..+ .|-|.+.|.+.++-..|+..|-+
T Consensus 10 kqnclikiinipqgtlkaevvlavrhlgyefycdyi--------dgqamirfqnsdeqrlaiqklln 68 (129)
T 4eyt_A 10 KQNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYI--------DGQAMIRFQNSDEQRLAIQKLLN 68 (129)
T ss_dssp CCSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEEC--------SSCEEEEESSHHHHHHHHHHHEE
T ss_pred hhCcEEEEEecCCCceeeeeEEeehhcCeeEeeeee--------cCeeEEEecCChHHHHHHHHHHh
Confidence 345778899999998888888877777765455443 35699999999999999987643
No 417
>3d53_A Inorganic pyrophosphatase; seattle structural G center for infectious disease, ssgcid, hydrolase, magnesium binding; 2.20A {Rickettsia prowazekii} PDB: 3emj_A*
Probab=29.57 E-value=65 Score=25.07 Aligned_cols=45 Identities=9% Similarity=0.040 Sum_probs=32.4
Q ss_pred eCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh
Q psy2618 13 GNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM 66 (390)
Q Consensus 13 ~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l 66 (390)
..||.. ..++|+.||+.|-... ..|...+-.|.+.+.|.+.+++.
T Consensus 125 ~Dl~~~-~l~~i~~fF~~YK~le--------~gK~v~v~gw~~~~~A~~~I~~~ 169 (173)
T 3d53_A 125 DDLCEM-LKKRIVHFFEHYKDLE--------KGKWVKVTGWGDKVKAETLIKEG 169 (173)
T ss_dssp GGSCHH-HHHHHHHHHHHTTTTS--------TTCCEEEEEEECHHHHHHHHHHH
T ss_pred hHCCHH-HHHHHHHHHHHHcCcc--------CCCcEEEccCcCHHHHHHHHHHH
Confidence 346654 5679999999995442 12346778899999999998764
No 418
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=29.07 E-value=17 Score=27.64 Aligned_cols=28 Identities=14% Similarity=0.210 Sum_probs=18.2
Q ss_pred HHHHhhhcCCCceeEEEEecCCCeEEEEec
Q psy2618 221 ELVSKVFSPFGTIVDIRVFKEKGYAFVKFT 250 (390)
Q Consensus 221 ~~l~~~f~~~g~v~~~~~~~~~g~~fv~f~ 250 (390)
+|+.++|...|.|+... ..+||+||+-.
T Consensus 2 ~~~~~l~~~~G~Vkwfn--~~kGfGFI~~~ 29 (148)
T 3ts2_A 2 ADEPQLLHGAGICKWFN--VRMGFGFLSMT 29 (148)
T ss_dssp ----CCEEEEEEEEEEE--TTTTEEEEEEE
T ss_pred CcccccccceeEEEEEE--CCCCeeEEeeC
Confidence 46667788888877544 36899999975
No 419
>3dxs_X Copper-transporting ATPase RAN1; CXXC motif, ferredoxin-like fold, ATP- binding, ethylene signaling pathway, hydrolase, ION transport; 1.70A {Arabidopsis thaliana} SCOP: d.58.17.0
Probab=28.53 E-value=1.1e+02 Score=18.96 Aligned_cols=55 Identities=11% Similarity=0.009 Sum_probs=41.6
Q ss_pred CeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEc----cHHHHHHHHHH
Q psy2618 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFV----HHTVAATALAA 65 (390)
Q Consensus 8 ~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~----~~~~A~~a~~~ 65 (390)
.++.|.|+.=..-...|++.++....|.++.+.... +.+.|+|. +.++...+++.
T Consensus 4 ~~~~v~gm~C~~C~~~ie~~l~~~~gv~~~~v~~~~---~~~~v~~~~~~~~~~~i~~~i~~ 62 (74)
T 3dxs_X 4 IQVGVTGMTCAACSNSVEAALMNVNGVFKASVALLQ---NRADVVFDPNLVKEEDIKEEIED 62 (74)
T ss_dssp EEEEEECCCSHHHHHHHHHHHHTSTTEEEEEEEGGG---TEEEEEECTTTCCHHHHHHHHHH
T ss_pred EEEEECCcCCHHHHHHHHHHHhcCCCEEEEEEEecC---CEEEEEECCCCCCHHHHHHHHHH
Confidence 468899998777778999999998888888775433 37899985 45667777765
No 420
>3lpx_A GYRA, DNA gyrase, A subunit; topoisomraseii, ATP-binding, isomerase, nucleo binding; HET: DNA; 2.60A {Colwellia psychrerythraea} SCOP: e.11.1.1 PDB: 2wl2_A* 2y3p_A* 3nuh_A* 1ab4_A
Probab=27.27 E-value=1.3e+02 Score=27.81 Aligned_cols=96 Identities=18% Similarity=0.279 Sum_probs=55.3
Q ss_pred CCCeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecCCC-CC-eEEEEEccHHHHHHHHHHhcCeeeccceeeEee
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREPGN-DP-YAFLEFVHHTVAATALAAMNKRVFLEKEMKVNW 80 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~~~-~g-~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~~ 80 (390)
...+|.|+-||..++.+.|.+.+... +.+..|.-++|.+. .| ---|+.+....++..++.|-.. ..+...+
T Consensus 225 ~~~~IvITElPy~v~k~~lie~I~~lv~~kki~~I~dirDesd~~gvrivIelk~~~~~~~~l~~L~k~----T~Lq~sf 300 (500)
T 3lpx_A 225 GKETIIVHELPYQVNKARLIEKMAELVKDKRLEGISALRDESDKDGMRMVIEIKRGEVGEVVLNNLYKL----TQMQVSF 300 (500)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSSCSEEEEEECCCSSCCCEEEEECTTSCHHHHHHHHHHH----STTEEEE
T ss_pred CCceEEEEecCCccCHHHHHHHHHHHHhcCCCCccccchhcCCCCceEEEEEECCCCCHHHHHHHHHHh----cCCceee
Confidence 45689999999999998887766532 44444444444432 23 3456777766666655543222 2222222
Q ss_pred cCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhC
Q psy2618 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117 (390)
Q Consensus 81 ~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 117 (390)
+. +..+++.|.|...+-.+|.+.|-
T Consensus 301 ~~------------Nm~al~~g~pk~~~l~eiL~~f~ 325 (500)
T 3lpx_A 301 GL------------NMVALTNGQPKIFNIKEMLEAFV 325 (500)
T ss_dssp EE------------ECEEESSSSEEECCHHHHHHHHH
T ss_pred ee------------eEEEEECCEeEECCHHHHHHHHH
Confidence 21 13455666776666666655553
No 421
>1qez_A Ppase, S-ppase, protein (inorganic pyrophosphatase); thermostability, magnesium, hydrolase; 2.70A {Sulfolobus acidocaldarius} SCOP: b.40.5.1
Probab=26.78 E-value=78 Score=24.63 Aligned_cols=46 Identities=11% Similarity=0.101 Sum_probs=32.8
Q ss_pred eCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhc
Q psy2618 13 GNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67 (390)
Q Consensus 13 ~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~ 67 (390)
..||.. ..++|+.||+.|-... ..|...+-.|.+.+.|.+.+++..
T Consensus 121 ~Dl~~~-~l~~i~~fF~~YK~le--------~gK~v~~~gw~~~~~A~~~I~~~~ 166 (173)
T 1qez_A 121 NDLPQA-TKNKIVHFFEHYKELE--------PGKYVKISGWGSATEAKNRIQLAI 166 (173)
T ss_dssp GGSCHH-HHHHHHHHHHHTTTTS--------TTCCEEEEEEECHHHHHHHHHHHH
T ss_pred HHCCHH-HHHHHHHHHHHhcccc--------CCCceEEccccCHHHHHHHHHHHH
Confidence 346654 5678999999995432 123466778999999999987643
No 422
>3ilw_A DNA gyrase subunit A; DNA topology, topoisomerase, antibiotic resistance, breakage-reunion domain, struct genomics; HET: DNA; 1.60A {Mycobacterium tuberculosis} SCOP: e.11.1.0 PDB: 3ifz_A*
Probab=26.30 E-value=1.2e+02 Score=27.76 Aligned_cols=96 Identities=14% Similarity=0.257 Sum_probs=55.5
Q ss_pred CCCeEEEeCCChhccHHHHHHHhccc---CCceEEEEeecC-CC-CC-eEEEEEccHHHHHHHHHHhcCeeeccceeeEe
Q psy2618 6 QPTTLYVGNLDVSVTEELLCALFSQI---GPVKGCKVIREP-GN-DP-YAFLEFVHHTVAATALAAMNKRVFLEKEMKVN 79 (390)
Q Consensus 6 ~~~~l~v~nLp~~~~~~~l~~~f~~~---G~v~~v~~~~~~-~~-~g-~afV~F~~~~~A~~a~~~l~~~~~~g~~l~v~ 79 (390)
...+|.|+-||..++.+.|.+.+... +.+..|.-++|. +. .| ---|+++....++..++.|-.. ..|...
T Consensus 235 ~~~~ivItElPy~v~~~~lie~i~~l~~~kki~~I~d~rDe~sd~~gvrivI~lk~~~~~~~~l~~L~k~----t~Lq~s 310 (470)
T 3ilw_A 235 GRTSLVITELPYQVNHDNFITSIAEQVRDGKLAGISNIEDQSSDRVGLRIVIEIKRDAVAKVVINNLYKH----TQLQTS 310 (470)
T ss_dssp CCEEEEEEECCTTCCHHHHHHHHHHHHHTTSCTTEEEEEECCBTTTBCCEEEEECTTSCHHHHHHHHHHH----STTEEE
T ss_pred CCCEEEEEeCCCccCHHHHHHHHHHHHhcCCCCccccccccCCCCCceEEEEEECCCCCHHHHHHHHHHh----ccchhe
Confidence 45689999999999999887766543 444334444444 22 23 3456777766666555543222 222222
Q ss_pred ecCCCCCCCCCCCCCceEEEEcCCCcccCHHHHHHHhC
Q psy2618 80 WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117 (390)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~f~ 117 (390)
++. +..+++.|.|...+-.+|.+.|-
T Consensus 311 ~~~------------Nm~al~~g~p~~~~l~eiL~~f~ 336 (470)
T 3ilw_A 311 FGA------------NMLAIVDGVPRTLRLDQLIRYYV 336 (470)
T ss_dssp EEE------------ECEEEETTEEEECCHHHHHHHHH
T ss_pred ece------------eeeEEECCeeeecCHHHHHHHHH
Confidence 221 13455577777677776655553
No 423
>2lfv_A Protein DAMX; cell division, peptidoglycan binding domain, murein binding bacterial cell division protein, RNP fold, RNP domain, cell; NMR {Escherichia coli}
Probab=30.86 E-value=15 Score=26.02 Aligned_cols=54 Identities=15% Similarity=0.111 Sum_probs=33.9
Q ss_pred ccHHHHHHHhcccCCceEEEEeecCCC-CC---eEEEEEccHHHHHHHHHHhcCeeecc
Q psy2618 19 VTEELLCALFSQIGPVKGCKVIREPGN-DP---YAFLEFVHHTVAATALAAMNKRVFLE 73 (390)
Q Consensus 19 ~~~~~l~~~f~~~G~v~~v~~~~~~~~-~g---~afV~F~~~~~A~~a~~~l~~~~~~g 73 (390)
.++++|..|..+.+ +..+.+.+..++ +. .-+=.|.|.++|..|++.|-...-..
T Consensus 34 ~~~~~l~~f~~~~~-l~~~~v~~t~rnGk~WyvVlyG~Y~s~~~A~~A~~~LP~~l~~~ 91 (106)
T 2lfv_A 34 SNYDNLNGWAKKEN-LKNYVVYETTRNGQPWYVLVSGVYASKEEAKKAVSTLPADVQAK 91 (106)
Confidence 45667888887776 344555443322 11 23347999999999999876654333
No 424
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=24.58 E-value=78 Score=21.28 Aligned_cols=54 Identities=7% Similarity=0.022 Sum_probs=37.0
Q ss_pred EEeCCChhccHHHHHHHhccc-C-CceEEEEeecCCCCCeEEEEEccHHHHHHHHH
Q psy2618 11 YVGNLDVSVTEELLCALFSQI-G-PVKGCKVIREPGNDPYAFLEFVHHTVAATALA 64 (390)
Q Consensus 11 ~v~nLp~~~~~~~l~~~f~~~-G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~ 64 (390)
++=.++..++..+|++.++.+ | .|.+|....-++...-|||++....+|.....
T Consensus 25 ~~F~V~~~AnK~qIK~ave~lf~VkV~~VNT~~~~~~~KKA~VtL~~g~~aid~~~ 80 (85)
T 1vq8_S 25 LQFAVDDRASKGEVADAVEEQYDVTVEQVNTQNTMDGEKKAVVRLSEDDDAQEVAS 80 (85)
T ss_dssp EEEEECTTCCHHHHHHHHHHHHCCCEEEEEEEECTTSSEEEEEEECTTSCHHHHHT
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCCceEEEeeecCCCceEEEEEECCCCcHHHHHH
Confidence 334466788999998887753 4 56667665544444479999998887766543
No 425
>3off_A LDLR chaperone BOCA; MESD, molecular chaperone, protein folding, YWTD propeller; 2.00A {Drosophila melanogaster} PDB: 3ofe_A*
Probab=22.92 E-value=1.8e+02 Score=19.70 Aligned_cols=60 Identities=13% Similarity=0.006 Sum_probs=37.9
Q ss_pred CCCCCeEEEeCCChhccHHHHHHHhccc-------CCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHhcC
Q psy2618 4 ESQPTTLYVGNLDVSVTEELLCALFSQI-------GPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNK 68 (390)
Q Consensus 4 ~~~~~~l~v~nLp~~~~~~~l~~~f~~~-------G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l~~ 68 (390)
....--+||+=.+ +.|+++..++..-+ .-.....++.+++ +.+-|.+-..|-.|.+-|-.
T Consensus 8 KGktlMmFV~v~~-~~t~~e~d~lt~lWqtsL~Nnhi~~~ry~Id~dr----~ifmf~DGs~a~e~kdfL~~ 74 (90)
T 3off_A 8 KGRTLMTFVSVTG-NPTREESDTITKLWQTSLWNNHIQAERYMVDDNR----AIFLFKDGTQAWDAKDFLIE 74 (90)
T ss_dssp TTCCEEEEEEESS-SCCHHHHHHHHHHHHHHHHHTTCCEEEEEEETTE----EEEEESSGGGHHHHHHHHTT
T ss_pred CCCeEEEEEEecC-CCCHHHHHHHHHHHHHHHHhCCeeEEEEEecCCE----EEEEEcChHHHHHHHHHHhc
Confidence 3344456675443 45666666555432 2234455666654 99999999999999987643
No 426
>1opz_A Potential copper-transporting ATPase; mutation, folding, abbab fold, hydrolase; NMR {Bacillus subtilis} SCOP: d.58.17.1 PDB: 1oq3_A 1oq6_A
Probab=22.90 E-value=1.3e+02 Score=18.16 Aligned_cols=61 Identities=7% Similarity=0.044 Sum_probs=41.4
Q ss_pred CCCCCCCeEEEeCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEcc----HHHHHHHHHH
Q psy2618 2 CDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVH----HTVAATALAA 65 (390)
Q Consensus 2 ~~~~~~~~l~v~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~----~~~A~~a~~~ 65 (390)
.+.-...++.|.++.-......|...+.....|.++.+... .+.+.|.|.. .++...+++.
T Consensus 2 ~~~~~~~~~~v~gm~C~~C~~~i~~~l~~~~gv~~~~v~~~---~~~~~v~~~~~~~~~~~i~~~i~~ 66 (76)
T 1opz_A 2 LSEQKEIAMQVSGMTCAACAARIEKGLKRMPGVTDANVNLA---TETVNVIYDPAETGTAAIQEKIEK 66 (76)
T ss_dssp CCCCEEEEEEEESCCSTTHHHHHHHHHHTSTTEEEEEEEGG---GTEEEEEECTTTCCHHHHHHHHHH
T ss_pred CccceEEEEEECCcccHHHHHHHHHHHhcCCCeEEEEEEec---CCEEEEEECCCCCCHHHHHHHHHH
Confidence 34445567899999766666778999988877877776433 3478888863 3455555654
No 427
>2prd_A Pyrophosphate phosphohydrolase; 2.00A {Thermus thermophilus} SCOP: b.40.5.1
Probab=22.04 E-value=89 Score=24.32 Aligned_cols=47 Identities=9% Similarity=0.116 Sum_probs=32.5
Q ss_pred eCCChhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEccHHHHHHHHHHh
Q psy2618 13 GNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM 66 (390)
Q Consensus 13 ~nLp~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~l 66 (390)
..||.. ..++|+.||+.|-... .+..|.+.+-.|.+.+.|.+.+++.
T Consensus 122 ~Dl~~~-~l~~i~~fF~~YK~le------~k~gK~v~~~gw~~~~~A~~~I~~~ 168 (174)
T 2prd_A 122 GDVPEG-VKQEIQHFFETYKALE------AKKGKWVKVTGWRDRKAALEEVRAC 168 (174)
T ss_dssp GGSCHH-HHHHHHHHHHHTTGGG------GGGTCCEEEEEEECHHHHHHHHHHH
T ss_pred HHCCHH-HHHHHHHHHHHhcCcc------ccCCCceEECcccCHHHHHHHHHHH
Confidence 446654 4678999999995432 1113446677899999999998764
No 428
>3u5e_X 60S ribosomal protein L25; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_K 2ww9_K 3izc_X 3izs_X 2wwb_K 3o5h_W 3o58_W 3u5i_X 4b6a_X 1s1i_T 3jyw_T
Probab=21.01 E-value=1.6e+02 Score=22.01 Aligned_cols=52 Identities=8% Similarity=0.108 Sum_probs=36.0
Q ss_pred CCChhccHHHHHHHhccc-C-CceEEEEeecCCCCCeEEEEEccHHHHHHHHHH
Q psy2618 14 NLDVSVTEELLCALFSQI-G-PVKGCKVIREPGNDPYAFLEFVHHTVAATALAA 65 (390)
Q Consensus 14 nLp~~~~~~~l~~~f~~~-G-~v~~v~~~~~~~~~g~afV~F~~~~~A~~a~~~ 65 (390)
-+...++..+|++.++.+ | .|.+|....-.+...-|||.+....+|.....+
T Consensus 85 ~Vd~~AnK~qIK~AVEklf~VkV~kVNTl~~~~g~KKAyV~L~~~~daldvAnk 138 (142)
T 3u5e_X 85 QVSMKANKYQIKKAVKELYEVDVLKVNTLVRPNGTKKAYVRLTADYDALDIANR 138 (142)
T ss_dssp EECTTCCHHHHHHHHHHHHSCCEEEEEEEECTTSCEEEEEEECTTCCHHHHHHH
T ss_pred EEcCCCCHHHHHHHHHHHhCCceeEEEeeEcCCCceEEEEEeCCCCcHHHHHHh
Confidence 355678888888777653 3 466666655444444799999998888776554
No 429
>3ezj_A General secretion pathway protein GSPD; general secretory pathway, secretin, single chain antibody, transport, immune system, complex; 2.80A {Escherichia coli}
Probab=20.34 E-value=87 Score=25.73 Aligned_cols=103 Identities=13% Similarity=0.088 Sum_probs=55.4
Q ss_pred hhccHHHHHHHhcccCCceEEEEeecCCCCCeEEEEEc---cHHHHHHHHH---HhcCeee---ccceeeEeecCCCCCC
Q psy2618 17 VSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFV---HHTVAATALA---AMNKRVF---LEKEMKVNWASSPGNQ 87 (390)
Q Consensus 17 ~~~~~~~l~~~f~~~G~v~~v~~~~~~~~~g~afV~F~---~~~~A~~a~~---~l~~~~~---~g~~l~v~~~~~~~~~ 87 (390)
.+..+.+|+++|..++.+..+.++.+..-+|..-+.+. +.+++..+++ +.+|..+ .|..++|.........
T Consensus 11 l~f~~~~i~~vl~~la~~~g~n~vvd~~V~G~vtl~~~~~v~~~~~~~~l~~vL~~~gl~~~~~~g~v~~V~p~~~~~~~ 90 (241)
T 3ezj_A 11 ANFKDTDLKSFIETVGANLNKTIIMGPGVQGAVSIRTMTPLNERQYYQLFLNLLEAQGYAVVPMENDVLKVVKSSAAKVE 90 (241)
T ss_dssp CEEEEEEHHHHHHHHHHHHTCEEEC---CCCEEEEEESSCBCHHHHHHHHHHHHHHTTEEEEEETTTEEEEEEC------
T ss_pred EEeCCCCHHHHHHHHHHHhCCeEEECCCCcceEEEEeCCCCCHHHHHHHHHHHHHHCCcEEEEcCCCEEEEEEhHHhhhc
Confidence 34455567777777777777777777776776666665 4665555433 5678765 4788888776432211
Q ss_pred CC-----------CCCCCceEEEEcCCCcccCHHHHHHHhCCC
Q psy2618 88 PK-----------QDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119 (390)
Q Consensus 88 ~~-----------~~~~~~~~l~v~nl~~~~~~~~l~~~f~~~ 119 (390)
.. .+......+.+.+.+..--...|+.++..-
T Consensus 91 ~~~~~~~~~~~~~~~~~~t~vi~L~~~~a~~l~~~L~~l~~~~ 133 (241)
T 3ezj_A 91 PLPLVGEGSDNYAGDEMVTKVVPVRNVSVRELAPILRQMIDSA 133 (241)
T ss_dssp -------------CCCEEEEEEECCSSCGGGTHHHHHHHHHHH
T ss_pred CCccccCCCCCCCCCceEEEEEEecccCHHHHHHHHHHHhCcC
Confidence 10 011112344455555544455667766654
Done!