Your job contains 1 sequence.
>psy2618
MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAA
TALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG
EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT
NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK
EKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNST
APQFPYIYNQQMGYWYPQAAAYTATAAQLPQQFYQYGQLGYPQGYVGMVGRQVPGWQGIP
GAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ
The BLAST search returned 8 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2618
(390 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0005649 - symbol:Rox8 "Rox8" species:7227 "Drosoph... 1015 8.2e-112 3
MGI|MGI:107913 - symbol:Tial1 "Tia1 cytotoxic granule-ass... 769 1.0e-93 3
RGD|1595845 - symbol:Tial1 "Tia1 cytotoxic granule-associ... 769 1.0e-93 3
UNIPROTKB|E2RA41 - symbol:TIAL1 "Uncharacterized protein"... 769 1.4e-92 3
UNIPROTKB|F2Z5F9 - symbol:LOC100736782 "Uncharacterized p... 769 1.4e-92 3
UNIPROTKB|Q01085 - symbol:TIAL1 "Nucleolysin TIAR" specie... 881 7.0e-92 2
UNIPROTKB|F2Z4H8 - symbol:TIAL1 "Uncharacterized protein"... 881 7.0e-92 2
UNIPROTKB|F1NS94 - symbol:374274 "Uncharacterized protein... 769 9.9e-92 3
UNIPROTKB|F1NY49 - symbol:374274 "Uncharacterized protein... 769 9.9e-92 3
ZFIN|ZDB-GENE-040426-1547 - symbol:tial1 "TIA1 cytotoxic ... 763 1.3e-91 3
ZFIN|ZDB-GENE-030131-2167 - symbol:tia1l "cytotoxic granu... 883 2.0e-88 1
UNIPROTKB|D4A964 - symbol:Tial1 "Protein Tial1" species:1... 769 2.7e-88 2
UNIPROTKB|F1LQ36 - symbol:Tial1 "Protein Tial1" species:1... 769 2.7e-88 2
ZFIN|ZDB-GENE-030131-1506 - symbol:tia1 "cytotoxic granul... 870 4.7e-87 1
UNIPROTKB|Q800W4 - symbol:TIA1 "Uncharacterized protein" ... 865 1.6e-86 1
RGD|1305742 - symbol:Tia1 "TIA1 cytotoxic granule-associa... 855 1.8e-85 1
UNIPROTKB|F8W8I6 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 842 4.4e-84 1
UNIPROTKB|P31483 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 839 9.1e-84 1
UNIPROTKB|Q0VBZ6 - symbol:TIA1 "TIA1 cytotoxic granule-as... 831 6.4e-83 1
UNIPROTKB|F1PWU8 - symbol:TIA1 "Uncharacterized protein" ... 831 6.4e-83 1
MGI|MGI:107914 - symbol:Tia1 "cytotoxic granule-associate... 824 3.6e-82 1
UNIPROTKB|D4A6U8 - symbol:Tia1 "Protein Tia1" species:101... 817 2.0e-81 1
UNIPROTKB|C9JTN7 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 756 5.7e-75 1
WB|WBGene00015943 - symbol:tiar-1 species:6239 "Caenorhab... 744 1.1e-73 1
UNIPROTKB|D4A7H4 - symbol:Tia1 "Protein Tia1" species:101... 743 1.4e-73 1
FB|FBgn0085383 - symbol:CG34354 species:7227 "Drosophila ... 739 3.6e-73 1
FB|FBgn0085391 - symbol:CG34362 species:7227 "Drosophila ... 703 2.4e-69 1
WB|WBGene00012904 - symbol:tiar-2 species:6239 "Caenorhab... 651 7.6e-64 1
UNIPROTKB|Q49AS9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 511 6.9e-53 2
UNIPROTKB|Q96B58 - symbol:TIA1 "TIA1 cytotoxic granule-as... 523 2.8e-50 1
ASPGD|ASPL0000061196 - symbol:AN10164 species:162425 "Eme... 485 3.0e-46 1
UNIPROTKB|F1SF34 - symbol:F1SF34 "Uncharacterized protein... 453 9.7e-46 2
UNIPROTKB|G4N7J4 - symbol:MGG_06400 "Nuclear and cytoplas... 476 2.7e-45 1
WB|WBGene00007396 - symbol:tiar-3 species:6239 "Caenorhab... 467 2.4e-44 1
TAIR|locus:2087457 - symbol:AT3G14100 species:3702 "Arabi... 461 1.0e-43 1
TAIR|locus:2018794 - symbol:UBP1B "oligouridylate binding... 454 5.7e-43 1
TAIR|locus:2014340 - symbol:UBP1A "oligouridylate-binding... 433 9.6e-41 1
CGD|CAL0004726 - symbol:orf19.7368 species:5476 "Candida ... 309 2.3e-40 2
UNIPROTKB|I3LRX5 - symbol:TIA1 "Uncharacterized protein" ... 415 7.8e-39 1
UNIPROTKB|H7BY49 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 411 2.1e-38 1
UNIPROTKB|E7ETJ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 403 1.5e-37 1
SGD|S000004961 - symbol:PUB1 "Poly (A)+ RNA-binding prote... 287 1.8e-36 2
UNIPROTKB|E7ETC0 - symbol:TIAL1 "Nucleolysin TIAR" specie... 370 4.6e-34 1
UNIPROTKB|Q9LEB4 - symbol:RBP45 "Polyadenylate-binding pr... 365 1.5e-33 1
TAIR|locus:2116322 - symbol:ATRBP45C species:3702 "Arabid... 357 1.1e-32 1
TAIR|locus:2027372 - symbol:RBP45B species:3702 "Arabidop... 343 3.3e-31 1
TAIR|locus:2160210 - symbol:RBP45A "RNA-binding protein 4... 341 5.4e-31 1
TAIR|locus:2094098 - symbol:RBP47B "RNA-binding protein 4... 334 3.0e-30 1
TAIR|locus:2012211 - symbol:RBP47A "RNA-binding protein 4... 332 4.9e-30 1
UNIPROTKB|Q9LEB3 - symbol:RBP47 "Polyadenylate-binding pr... 330 7.9e-30 1
POMBASE|SPBC23E6.01c - symbol:SPBC23E6.01c "mRNA processi... 330 7.9e-30 1
UNIPROTKB|E5RGV5 - symbol:TIA1 "Nucleolysin TIA-1 isoform... 326 2.1e-29 1
TAIR|locus:2150215 - symbol:AT5G19350 species:3702 "Arabi... 321 7.1e-29 1
TAIR|locus:2015398 - symbol:RBP47C' "RNA-binding protein ... 320 9.1e-29 1
TAIR|locus:2015403 - symbol:RBP47C "RNA-binding protein 4... 314 3.9e-28 1
UNIPROTKB|G4NFS0 - symbol:MGG_08741 "tRNA selenocysteine-... 214 8.5e-27 2
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 273 2.0e-25 2
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 273 3.3e-25 2
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 273 3.7e-25 2
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 273 4.7e-25 2
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 273 5.3e-25 2
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 272 5.5e-25 2
ASPGD|ASPL0000035772 - symbol:rrmA species:162425 "Emeric... 200 8.8e-25 2
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 263 5.3e-24 2
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 263 8.8e-24 2
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 261 8.9e-24 2
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 263 2.9e-23 2
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 260 4.4e-23 2
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 260 6.2e-23 2
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 260 6.2e-23 2
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 260 6.2e-23 2
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 260 6.2e-23 2
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 260 6.2e-23 2
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 258 7.9e-23 2
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 270 1.5e-22 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 259 2.6e-22 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 265 4.2e-22 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 265 5.0e-22 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 265 5.5e-22 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 259 6.0e-22 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 262 1.0e-21 1
ZFIN|ZDB-GENE-020419-22 - symbol:sf3b4 "splicing factor 3... 249 1.3e-21 2
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 260 1.8e-21 1
UNIPROTKB|H9L019 - symbol:SF3B4 "Uncharacterized protein"... 254 2.0e-21 1
UNIPROTKB|F1MWR2 - symbol:SF3B4 "Uncharacterized protein"... 254 2.1e-21 1
UNIPROTKB|E2R5T2 - symbol:SF3B4 "Uncharacterized protein"... 254 2.1e-21 1
UNIPROTKB|Q15427 - symbol:SF3B4 "Splicing factor 3B subun... 254 2.1e-21 1
UNIPROTKB|F1SDG0 - symbol:SF3B4 "Uncharacterized protein"... 254 2.1e-21 1
MGI|MGI:109580 - symbol:Sf3b4 "splicing factor 3b, subuni... 254 2.1e-21 1
RGD|1309667 - symbol:Sf3b4 "splicing factor 3b, subunit 4... 254 2.1e-21 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 259 2.3e-21 1
UNIPROTKB|A6NKZ9 - symbol:TIAL1 "Nucleolysin TIAR" specie... 249 3.0e-21 1
TAIR|locus:2046298 - symbol:emb2444 "embryo defective 244... 243 4.8e-21 2
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 254 8.0e-21 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 246 1.4e-20 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 252 4.1e-20 1
UNIPROTKB|Q5U259 - symbol:elavl1-b "ELAV-like protein 1-B... 193 4.2e-20 2
POMBASE|SPAC17A2.09c - symbol:csx1 "RNA-binding protein C... 252 5.1e-20 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 205 6.7e-20 3
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 205 6.7e-20 3
WARNING: Descriptions of 1125 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0005649 [details] [associations]
symbol:Rox8 "Rox8" species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=NAS] [GO:0003729 "mRNA
binding" evidence=ISS;NAS] [GO:0005685 "U1 snRNP" evidence=ISS]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IC]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:AE014297
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0000381 HSSP:P11940 GO:GO:0005685
GeneTree:ENSGT00680000099967 KO:K13201 OMA:EEVYNQS
FlyBase:FBgn0005649 EMBL:BT050464 RefSeq:NP_732945.1
UniGene:Dm.6352 SMR:Q8IMX4 IntAct:Q8IMX4 MINT:MINT-303158
STRING:Q8IMX4 EnsemblMetazoa:FBtr0084591 EnsemblMetazoa:FBtr0333200
EnsemblMetazoa:FBtr0333201 EnsemblMetazoa:FBtr0333202 GeneID:42848
KEGG:dme:Dmel_CG5422 UCSC:CG5422-RD CTD:42848 InParanoid:Q8IMX4
GenomeRNAi:42848 NextBio:830893 Uniprot:Q8IMX4
Length = 470
Score = 1015 (362.4 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 194/299 (64%), Positives = 234/299 (78%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXX 62
DESQP TLYVGNLD SV+E+LL ALFS +GPVK CK+IREPGNDPYAF+E+
Sbjct: 2 DESQPKTLYVGNLDSSVSEDLLIALFSTMGPVKSCKIIREPGNDPYAFIEYSNYQAATTA 61
Query: 63 XXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI 122
MNKR+FLEKE+KVNWA+SPGNQPK D S+H+HIFVGDLSPEIET+TL+EAFAPFGEI
Sbjct: 62 LTAMNKRLFLEKEIKVNWATSPGNQPKTDISSHHHIFVGDLSPEIETETLREAFAPFGEI 121
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK--PPAMT 180
SNCRIVRDP T+KSKGYAFVSFVKKAEAENAI AMNGQW+GSRSIRTNWSTRK PP
Sbjct: 122 SNCRIVRDPHTMKSKGYAFVSFVKKAEAENAIQAMNGQWIGSRSIRTNWSTRKLPPPREP 181
Query: 181 NERKRQNSH-------------TKTITFDEVYNQSSPTNCTVYCGGFGKD-LNEELVSKV 226
++ Q ++ TF+EVYNQSSPTN TVYCGGF + ++++L+ K
Sbjct: 182 SKGGGQGGGMGGGPGNGSGVKGSQRHTFEEVYNQSSPTNTTVYCGGFPPNVISDDLMHKH 241
Query: 227 FSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285
F FG I D+RVFK+KG++F+KF TKE A HAIE HN++++G+ VKCFWGKE+ +++
Sbjct: 242 FVQFGPIQDVRVFKDKGFSFIKFVTKEAAAHAIEHTHNSEVHGNLVKCFWGKENGGDNS 300
Score = 70 (29.7 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 16/29 (55%), Positives = 17/29 (58%)
Query: 287 AQPSAPTTPQPNSTAPQFPYIYNQQMGYW 315
A P TPQ A Q+PY Y QQMGYW
Sbjct: 350 AIPGQMMTPQ--QIAAQYPYAY-QQMGYW 375
Score = 53 (23.7 bits), Expect = 8.2e-112, Sum P(3) = 8.2e-112
Identities = 15/40 (37%), Positives = 19/40 (47%)
Query: 353 VPGW--QGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
VPG G+ A +A A P MM + AM Q+ TQ
Sbjct: 431 VPGTVVPGVTAAAASAAAAANGSLAPQMMYSAAMPQYQTQ 470
Score = 41 (19.5 bits), Expect = 1.2e-104, Sum P(2) = 1.2e-104
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 358 GIPGAQPTAQQMAVAQ--AQPSMM 379
G+PG T QQ+A A A P M
Sbjct: 332 GMPGQMMTQQQIAAATGAAIPGQM 355
>MGI|MGI:107913 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0007281 "germ cell development" evidence=IMP] [GO:0008284
"positive regulation of cell proliferation" evidence=IMP]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0017145 "stem cell
division" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:107913
GO:GO:0005634 GO:GO:0006915 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 ChiTaRS:TIAL1
EMBL:U55861 IPI:IPI00108085 PIR:S72436 RefSeq:NP_033409.1
UniGene:Mm.242072 ProteinModelPortal:P70318 SMR:P70318
IntAct:P70318 STRING:P70318 PhosphoSite:P70318 PaxDb:P70318
PRIDE:P70318 Ensembl:ENSMUST00000106226 GeneID:21843 KEGG:mmu:21843
InParanoid:P70318 OMA:NGSKQLR NextBio:301310 Bgee:P70318
Genevestigator:P70318 GermOnline:ENSMUSG00000030846 Uniprot:P70318
Length = 392
Score = 769 (275.8 bits), Expect = 1.0e-93, Sum P(3) = 1.0e-93
Identities = 141/245 (57%), Positives = 178/245 (72%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 55 GFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 113
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPA---PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIA 230
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L ++L+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+
Sbjct: 231 SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 276 WGKES 280
WGKES
Sbjct: 291 WGKES 295
Score = 163 (62.4 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 59/242 (24%), Positives = 108/242 (44%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLK---SKG------- 138
+D ++VG+LS ++ + + F+ G +C+++ + P + + S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 139 ----YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
Y FV F + +A A+ AMNG+ + + ++ NW+T P+ +++K ++H
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT--PS--SQKKDTSNH----- 113
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248
F V+ G ++ E + F+PFG I D RV K+ KGY FV
Sbjct: 114 FH------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAPQFPYIY 308
F K A +AI + + G ++ W +T P+ +T + N+ +F +
Sbjct: 162 FYNKLDAENAIVHMGGQWLGGRQIRTNW-------ATRKPPAPKSTQETNTKQLRFEDVV 214
Query: 309 NQ 310
NQ
Sbjct: 215 NQ 216
Score = 152 (58.6 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 49/217 (22%), Positives = 99/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPK--QDTSN---------------HYHIFVGD 102
M + ++++ NWA+ PK Q+T+ + ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 283 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 317
Score = 132 (51.5 bits), Expect = 1.0e-93, Sum P(3) = 1.0e-93
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 43
Score = 65 (27.9 bits), Expect = 1.0e-93, Sum P(3) = 1.0e-93
Identities = 15/35 (42%), Positives = 15/35 (42%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP Q P A Y M FPTQ
Sbjct: 358 WMGGFGAQPPQGQAPPPVIPPPNQAGYGMASFPTQ 392
>RGD|1595845 [details] [associations]
symbol:Tial1 "Tia1 cytotoxic granule-associated RNA binding
protein-like 1" species:10116 "Rattus norvegicus" [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0007281 "germ cell development" evidence=ISO] [GO:0008284
"positive regulation of cell proliferation" evidence=ISO]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0017145 "stem cell
division" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1595845
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 EMBL:CH473956
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 CTD:7073 IPI:IPI00555194
EMBL:BC091409 RefSeq:NP_001013211.1 UniGene:Rn.162475 SMR:Q5BJN3
STRING:Q5BJN3 GeneID:361655 KEGG:rno:361655 UCSC:RGD:1595845
InParanoid:Q5BJN3 NextBio:677112 Genevestigator:Q5BJN3
Uniprot:Q5BJN3
Length = 392
Score = 769 (275.8 bits), Expect = 1.0e-93, Sum P(3) = 1.0e-93
Identities = 141/245 (57%), Positives = 178/245 (72%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 55 GFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 113
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPA---PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIA 230
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L ++L+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+
Sbjct: 231 SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 276 WGKES 280
WGKES
Sbjct: 291 WGKES 295
Score = 163 (62.4 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 59/242 (24%), Positives = 108/242 (44%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLK---SKG------- 138
+D ++VG+LS ++ + + F+ G +C+++ + P + + S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 139 ----YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
Y FV F + +A A+ AMNG+ + + ++ NW+T P+ +++K ++H
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT--PS--SQKKDTSNH----- 113
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248
F V+ G ++ E + F+PFG I D RV K+ KGY FV
Sbjct: 114 FH------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAPQFPYIY 308
F K A +AI + + G ++ W +T P+ +T + N+ +F +
Sbjct: 162 FYNKLDAENAIVHMGGQWLGGRQIRTNW-------ATRKPPAPKSTQETNTKQLRFEDVV 214
Query: 309 NQ 310
NQ
Sbjct: 215 NQ 216
Score = 152 (58.6 bits), Expect = 9.0e-11, Sum P(2) = 9.0e-11
Identities = 49/217 (22%), Positives = 99/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPK--QDTSN---------------HYHIFVGD 102
M + ++++ NWA+ PK Q+T+ + ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 283 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 317
Score = 132 (51.5 bits), Expect = 1.0e-93, Sum P(3) = 1.0e-93
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 43
Score = 65 (27.9 bits), Expect = 1.0e-93, Sum P(3) = 1.0e-93
Identities = 15/35 (42%), Positives = 15/35 (42%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP Q P A Y M FPTQ
Sbjct: 358 WMGGFGAQPPQGQAPPPVIPPPNQAGYGMASFPTQ 392
>UNIPROTKB|E2RA41 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017145 "stem cell division" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0008284 "positive
regulation of cell proliferation" evidence=IEA] [GO:0007281 "germ
cell development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:AAEX03015584 EMBL:AAEX03015585 RefSeq:XP_852319.1
ProteinModelPortal:E2RA41 SMR:E2RA41 Ensembl:ENSCAFT00000019370
GeneID:477841 KEGG:cfa:477841 NextBio:20853261 Uniprot:E2RA41
Length = 392
Score = 769 (275.8 bits), Expect = 1.4e-92, Sum P(3) = 1.4e-92
Identities = 141/245 (57%), Positives = 178/245 (72%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 55 GFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 113
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPA---PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIA 230
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L ++L+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+
Sbjct: 231 SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 276 WGKES 280
WGKES
Sbjct: 291 WGKES 295
Score = 167 (63.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 63/243 (25%), Positives = 111/243 (45%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLK---SKG------- 138
+D ++VG+LS ++ + + F+ G +C+++ + P + + S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 139 ----YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
Y FV F + +A A+ AMNG+ + + ++ NW+T P+ +++K ++H
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT--PS--SQKKDTSNH----- 113
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248
F V+ G ++ E + F+PFG I D RV K+ KGY FV
Sbjct: 114 FH------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAP-QFPYI 307
F K A +AI +H + G + G++ N +P AP + Q N+T +F +
Sbjct: 162 FYNKLDAENAI--VH---MGGQWLG---GRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 213
Query: 308 YNQ 310
NQ
Sbjct: 214 VNQ 216
Score = 153 (58.9 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 51/217 (23%), Positives = 98/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 60 XXXXXXMNKRVFLEKEMKVNWA--------SSPGNQPKQ----DTSNHYH-----IFVGD 102
M + ++++ NWA S+ N KQ D N ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 283 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 317
Score = 132 (51.5 bits), Expect = 1.4e-92, Sum P(3) = 1.4e-92
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 43
Score = 54 (24.1 bits), Expect = 1.4e-92, Sum P(3) = 1.4e-92
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP Q P A Y M + TQ
Sbjct: 358 WMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 392
>UNIPROTKB|F2Z5F9 [details] [associations]
symbol:LOC100736782 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:EEVYNQS
EMBL:CT826370 EMBL:CT867965 RefSeq:XP_003133244.1 UniGene:Ssc.56271
ProteinModelPortal:F2Z5F9 SMR:F2Z5F9 Ensembl:ENSSSCT00000011686
GeneID:100158186 KEGG:ssc:100158186 Uniprot:F2Z5F9
Length = 392
Score = 769 (275.8 bits), Expect = 1.4e-92, Sum P(3) = 1.4e-92
Identities = 141/245 (57%), Positives = 178/245 (72%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 55 GFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 113
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPA---PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIA 230
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L ++L+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+
Sbjct: 231 SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 276 WGKES 280
WGKES
Sbjct: 291 WGKES 295
Score = 167 (63.8 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 63/243 (25%), Positives = 111/243 (45%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLK---SKG------- 138
+D ++VG+LS ++ + + F+ G +C+++ + P + + S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 139 ----YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
Y FV F + +A A+ AMNG+ + + ++ NW+T P+ +++K ++H
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT--PS--SQKKDTSNH----- 113
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248
F V+ G ++ E + F+PFG I D RV K+ KGY FV
Sbjct: 114 FH------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAP-QFPYI 307
F K A +AI +H + G + G++ N +P AP + Q N+T +F +
Sbjct: 162 FYNKLDAENAI--VH---MGGQWLG---GRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 213
Query: 308 YNQ 310
NQ
Sbjct: 214 VNQ 216
Score = 153 (58.9 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 51/217 (23%), Positives = 98/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 60 XXXXXXMNKRVFLEKEMKVNWA--------SSPGNQPKQ----DTSNHYH-----IFVGD 102
M + ++++ NWA S+ N KQ D N ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 283 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 317
Score = 132 (51.5 bits), Expect = 1.4e-92, Sum P(3) = 1.4e-92
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 43
Score = 54 (24.1 bits), Expect = 1.4e-92, Sum P(3) = 1.4e-92
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP Q P A Y M + TQ
Sbjct: 358 WMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 392
>UNIPROTKB|Q01085 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:0003723 "RNA binding" evidence=TAS] [GO:0006952
"defense response" evidence=TAS] [GO:0005764 "lysosome"
evidence=TAS] [GO:0006357 "regulation of transcription from RNA
polymerase II promoter" evidence=TAS] [GO:0006917 "induction of
apoptosis" evidence=TAS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0006915 GO:GO:0006952 GO:GO:0006917 GO:GO:0000166
GO:GO:0008284 Gene3D:3.30.70.330 GO:GO:0006357 GO:GO:0005764
GO:GO:0003723 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
eggNOG:COG0724 GO:GO:0017145 HOGENOM:HOG000206748 KO:K13201
HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:M96954 EMBL:AK290695
EMBL:AK290984 IPI:IPI00005615 IPI:IPI00644708 PIR:A46174
RefSeq:NP_001029097.1 RefSeq:NP_003243.1 UniGene:Hs.501203 PDB:1X4G
PDB:2CQI PDB:2DH7 PDBsum:1X4G PDBsum:2CQI PDBsum:2DH7
ProteinModelPortal:Q01085 SMR:Q01085 DIP:DIP-42425N IntAct:Q01085
MINT:MINT-1203913 STRING:Q01085 PhosphoSite:Q01085 DMDM:267131
PaxDb:Q01085 PRIDE:Q01085 Ensembl:ENST00000369093
Ensembl:ENST00000436547 GeneID:7073 KEGG:hsa:7073 UCSC:uc001lei.1
CTD:7073 GeneCards:GC10M121324 HGNC:HGNC:11804 MIM:603413
neXtProt:NX_Q01085 PharmGKB:PA36513 OMA:EEVYNQS PhylomeDB:Q01085
ChiTaRS:TIAL1 EvolutionaryTrace:Q01085 GenomeRNAi:7073
NextBio:27661 ArrayExpress:Q01085 Bgee:Q01085 CleanEx:HS_TIAL1
Genevestigator:Q01085 GermOnline:ENSG00000151923 Uniprot:Q01085
Length = 375
Score = 881 (315.2 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
Identities = 166/281 (59%), Positives = 204/281 (72%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDPYAFLEFXXXXXX 59
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E NDPY F+EF
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN R L KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPF
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKSAFAPF 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G+IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA- 179
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ Q ++TK + F++V NQSSP NCTVYCGG L ++L+ + FSPFG I++IRVF
Sbjct: 180 --PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 237
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280
EKGY+FV+F+T E+A HAI S++ T I GH VKC+WGKES
Sbjct: 238 PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 278
Score = 153 (58.9 bits), Expect = 7.8e-10, Sum P(2) = 7.8e-10
Identities = 51/217 (23%), Positives = 98/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 151
Query: 60 XXXXXXMNKRVFLEKEMKVNWA--------SSPGNQPKQ----DTSNHYH-----IFVGD 102
M + ++++ NWA S+ N KQ D N ++ G
Sbjct: 152 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 211
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 212 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 265
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 266 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 300
Score = 116 (45.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 41/142 (28%), Positives = 61/142 (42%)
Query: 178 AMTNERKRQNSHTKT--ITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVD 235
A N RK K T + + + V+ G ++ E + F+PFG I D
Sbjct: 66 AAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 236 IRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQP 289
RV K+ KGY FV F K A +AI +H + G + G++ N +P
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAI--VH---MGGQWLG---GRQIRTNWATRKP 177
Query: 290 SAPTTPQPNSTAP-QFPYIYNQ 310
AP + Q N+T +F + NQ
Sbjct: 178 PAPKSTQENNTKQLRFEDVVNQ 199
Score = 54 (24.1 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP Q P A Y M + TQ
Sbjct: 341 WMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 375
>UNIPROTKB|F2Z4H8 [details] [associations]
symbol:TIAL1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017145 "stem cell division" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA] [GO:0008284 "positive regulation of
cell proliferation" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0008284 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0007281 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 KO:K13201 CTD:7073 OMA:NGSKQLR
EMBL:DAAA02059399 IPI:IPI00707976 RefSeq:NP_001179985.1
UniGene:Bt.15754 ProteinModelPortal:F2Z4H8
Ensembl:ENSBTAT00000005331 GeneID:614540 KEGG:bta:614540
NextBio:20899153 Uniprot:F2Z4H8
Length = 380
Score = 881 (315.2 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
Identities = 166/281 (59%), Positives = 204/281 (72%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDPYAFLEFXXXXXX 59
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E NDPY F+EF
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN R L KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPF
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKSAFAPF 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G+IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA
Sbjct: 121 GKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA- 179
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ Q ++TK + F++V NQSSP NCTVYCGG L ++L+ + FSPFG I++IRVF
Sbjct: 180 --PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF 237
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280
EKGY+FV+F+T E+A HAI S++ T I GH VKC+WGKES
Sbjct: 238 PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 278
Score = 150 (57.9 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 48/198 (24%), Positives = 88/198 (44%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 92 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 151
Query: 60 XXXXXXMNKRVFLEKEMKVNWA--------SSPGNQPKQ----DTSNHYH-----IFVGD 102
M + ++++ NWA S+ N KQ D N ++ G
Sbjct: 152 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 211
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 212 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 265
Query: 163 GSRSIRTNWSTRKPPAMT 180
++ W ++ P MT
Sbjct: 266 EGHVVKCYWG-KESPDMT 282
Score = 116 (45.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 41/142 (28%), Positives = 61/142 (42%)
Query: 178 AMTNERKRQNSHTKT--ITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVD 235
A N RK K T + + + V+ G ++ E + F+PFG I D
Sbjct: 66 AAMNGRKILGKEVKVNWATTPSSQKKDTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISD 125
Query: 236 IRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQP 289
RV K+ KGY FV F K A +AI +H + G + G++ N +P
Sbjct: 126 ARVVKDMATGKSKGYGFVSFYNKLDAENAI--VH---MGGQWLG---GRQIRTNWATRKP 177
Query: 290 SAPTTPQPNSTAP-QFPYIYNQ 310
AP + Q N+T +F + NQ
Sbjct: 178 PAPKSTQENNTKQLRFEDVVNQ 199
Score = 54 (24.1 bits), Expect = 7.0e-92, Sum P(2) = 7.0e-92
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP Q P A Y M + TQ
Sbjct: 346 WMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 380
>UNIPROTKB|F1NS94 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00681845 Ensembl:ENSGALT00000029737 ArrayExpress:F1NS94
Uniprot:F1NS94
Length = 389
Score = 769 (275.8 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 141/245 (57%), Positives = 178/245 (72%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 55 GFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 113
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPA---PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIA 230
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L ++L+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+
Sbjct: 231 SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 276 WGKES 280
WGKES
Sbjct: 291 WGKES 295
Score = 167 (63.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 63/243 (25%), Positives = 111/243 (45%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLK---SKG------- 138
+D ++VG+LS ++ + + F+ G +C+++ + P + + S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 139 ----YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
Y FV F + +A A+ AMNG+ + + ++ NW+T P+ +++K ++H
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT--PS--SQKKDTSNH----- 113
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248
F V+ G ++ E + F+PFG I D RV K+ KGY FV
Sbjct: 114 FH------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAP-QFPYI 307
F K A +AI +H + G + G++ N +P AP + Q N+T +F +
Sbjct: 162 FYNKLDAENAI--VH---MGGQWLG---GRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 213
Query: 308 YNQ 310
NQ
Sbjct: 214 VNQ 216
Score = 153 (58.9 bits), Expect = 6.1e-09, Sum P(2) = 6.1e-09
Identities = 51/217 (23%), Positives = 98/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 60 XXXXXXMNKRVFLEKEMKVNWA--------SSPGNQPKQ----DTSNHYH-----IFVGD 102
M + ++++ NWA S+ N KQ D N ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 283 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 317
Score = 132 (51.5 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 43
Score = 46 (21.3 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP AQ A P+ A Y M + TQ
Sbjct: 358 WMGGFGAQP-AQGQG-APVIPNQ-AGYGMASYQTQ 389
>UNIPROTKB|F1NY49 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0010494 GO:GO:0017145
GeneTree:ENSGT00680000099967 OMA:EEVYNQS EMBL:AADN02030982
IPI:IPI00575679 Ensembl:ENSGALT00000015349 ArrayExpress:F1NY49
Uniprot:F1NY49
Length = 388
Score = 769 (275.8 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 141/245 (57%), Positives = 178/245 (72%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 54 GFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 112
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 113 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 172
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG
Sbjct: 173 HMGGQWLGGRQIRTNWATRKPPA---PKSTQENNTKQLRFEDVVNQSSPKNCTVYCGGIA 229
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L ++L+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+
Sbjct: 230 SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 289
Query: 276 WGKES 280
WGKES
Sbjct: 290 WGKES 294
Score = 167 (63.8 bits), Expect = 1.3e-10, Sum P(2) = 1.3e-10
Identities = 63/243 (25%), Positives = 111/243 (45%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLK---SKG------- 138
+D ++VG+LS ++ + + F+ G +C+++ + P + + S G
Sbjct: 2 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 61
Query: 139 ----YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
Y FV F + +A A+ AMNG+ + + ++ NW+T P+ +++K ++H
Sbjct: 62 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT--PS--SQKKDTSNH----- 112
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248
F V+ G ++ E + F+PFG I D RV K+ KGY FV
Sbjct: 113 FH------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 160
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAP-QFPYI 307
F K A +AI +H + G + G++ N +P AP + Q N+T +F +
Sbjct: 161 FYNKLDAENAI--VH---MGGQWLG---GRQIRTNWATRKPPAPKSTQENNTKQLRFEDV 212
Query: 308 YNQ 310
NQ
Sbjct: 213 VNQ 215
Score = 153 (58.9 bits), Expect = 6.0e-09, Sum P(2) = 6.0e-09
Identities = 51/217 (23%), Positives = 98/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 108 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 167
Query: 60 XXXXXXMNKRVFLEKEMKVNWA--------SSPGNQPKQ----DTSNHYH-----IFVGD 102
M + ++++ NWA S+ N KQ D N ++ G
Sbjct: 168 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQENNTKQLRFEDVVNQSSPKNCTVYCGG 227
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 228 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 281
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 282 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 316
Score = 132 (51.5 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 1 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 42
Score = 46 (21.3 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP AQ A P+ A Y M + TQ
Sbjct: 357 WMGGFGAQP-AQGQG-APVIPNQ-AGYGMASYQTQ 388
>ZFIN|ZDB-GENE-040426-1547 [details] [associations]
symbol:tial1 "TIA1 cytotoxic granule-associated
RNA binding protein-like 1" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-1547 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00680000099967 EMBL:BX530079
IPI:IPI00920337 ProteinModelPortal:E9QJJ0
Ensembl:ENSDART00000135321 ArrayExpress:E9QJJ0 Bgee:E9QJJ0
Uniprot:E9QJJ0
Length = 389
Score = 763 (273.6 bits), Expect = 1.3e-91, Sum P(3) = 1.3e-91
Identities = 142/254 (55%), Positives = 179/254 (70%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 56 GFSVLQHTSNDPYCFVEFFEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 114
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T ++ AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 115 FHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAIV 174
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q++ K + FDEV NQSSP NCTVYCGG
Sbjct: 175 HMGGQWLGGRQIRTNWATRKPPA---PKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGGIQ 231
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L E L+ + FSPFG I++IRVF EKGY+F++F++ E+A HAI S++ T I GH VKC+
Sbjct: 232 SGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCY 291
Query: 276 WGKESENNSTLAQP 289
WGKES + + QP
Sbjct: 292 WGKESPDMAKNVQP 305
Score = 133 (51.9 bits), Expect = 1.3e-91, Sum P(3) = 1.3e-91
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M DES P TLYVGNL VTE L+ LF+QIGP K CK+I E
Sbjct: 1 MEDESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITE 42
Score = 124 (48.7 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 54/231 (23%), Positives = 93/231 (40%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSK-GYAFVSFVKKA 148
+D S+ ++VG+LS ++ + + F G +C+++ + K + + F
Sbjct: 2 EDESHPKTLYVGNLSRDVTENLILQLFTQIGPCKSCKMITEQSDSSRKMNSSSIGFSVLQ 61
Query: 149 EAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKT--ITFDEVYNQSSPTN 206
N ++ R + AM N RK K T + + +
Sbjct: 62 HTSNDPYCFV-EFFEHRDAAAALA-----AM-NGRKILGKEVKVNWATTPSSQKKDTSNH 114
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIE 260
V+ G ++ + + F+PFG I D RV K+ KGY FV F K A +AI
Sbjct: 115 FHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDAENAI- 173
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAP-QFPYIYNQ 310
+H + G + G++ N +P AP + Q NS +F + NQ
Sbjct: 174 -VH---MGGQWLG---GRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQ 217
Score = 113 (44.8 bits), Expect = 9.4e-05, Sum P(2) = 9.4e-05
Identities = 43/193 (22%), Positives = 75/193 (38%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T + + A F+ G + +V+++ G Y F+ F
Sbjct: 110 DTSNHFHVFVGDLSPEITTDDIRAAFAPFGKISDARVVKDMTTGKSKGYGFVSFYNKLDA 169
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPK--QDTSNHYHIF---VGDLSPEIETQTLKE 114
M + ++++ NWA+ PK QD S F V SP+ T
Sbjct: 170 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSVQDNSAKQLRFDEVVNQSSPQNCTVYCGG 229
Query: 115 AFAPFGE------ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168
+ E S + + + KGY+F+ F A +AI ++NG + ++
Sbjct: 230 IQSGLTEHLMRQTFSPFGQIMEIRVFPEKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVK 289
Query: 169 TNWSTRKPPAMTN 181
W P N
Sbjct: 290 CYWGKESPDMAKN 302
Score = 50 (22.7 bits), Expect = 1.3e-91, Sum P(3) = 1.3e-91
Identities = 13/35 (37%), Positives = 15/35 (42%)
Query: 352 QVPGWQGIPGAQPTAQQMAVAQAQPSM-MAAYAMQ 385
Q P W G G QP+ Q Q + MA Y Q
Sbjct: 355 QSPAWVGGFGTQPSQAQPGAVMNQANFGMAGYQTQ 389
>ZFIN|ZDB-GENE-030131-2167 [details] [associations]
symbol:tia1l "cytotoxic granule-associated RNA
binding protein 1, like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-030131-2167 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HSSP:P11940 GeneTree:ENSGT00680000099967 KO:K13201
OMA:PAYNTTV HOVERGEN:HBG105006 EMBL:BX088551 EMBL:BC045485
EMBL:BC066734 IPI:IPI00499030 RefSeq:NP_956476.1 UniGene:Dr.5585
SMR:Q7ZVM6 Ensembl:ENSDART00000003957 GeneID:323447 KEGG:dre:323447
CTD:323447 InParanoid:Q7ZVM6 NextBio:20808253 Uniprot:Q7ZVM6
Length = 342
Score = 883 (315.9 bits), Expect = 2.0e-88, P = 2.0e-88
Identities = 171/321 (53%), Positives = 221/321 (68%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXX 59
M DE QP TLYVGNL VTE L+ +FSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 MMDEDQPRTLYVGNLSRDVTEALILQVFSQIGPCKSCKMILDTTGNDPYCFVEFYENRHA 61
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN R L K+MKVNWAS+P +Q K+DTSNH+H+FVGDLSPEI T ++ AFAPF
Sbjct: 62 AAALAAMNGRKILGKDMKVNWASTPSSQ-KKDTSNHFHVFVGDLSPEISTDDVRAAFAPF 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G+IS+ R+V+D T KSKGY F+SF+ K +AE+AI MNGQWLG R IRTNW+TRKP A
Sbjct: 121 GKISDARVVKDLATGKSKGYGFISFINKWDAESAIQQMNGQWLGGRQIRTNWATRKPSAP 180
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ + +S K ++++EV NQSSP+NCTVYCGG L+++L+ + FSPFG I++IRVF
Sbjct: 181 KSNNEGASS--KHLSYEEVLNQSSPSNCTVYCGGIASGLSDQLMRQTFSPFGQIMEIRVF 238
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNS 299
EKGY+FV+F + E A HAI S++ T I GHTVKC+WGKE+ + ++ Q P +P
Sbjct: 239 PEKGYSFVRFDSHEGAAHAIVSVNGTCIEGHTVKCYWGKETADMRSMQQMPMPQQNKPTY 298
Query: 300 TAPQF-----PYIYNQQMGYW 315
A + Y QQMG +
Sbjct: 299 AAQPYGQWGQSYGNGQQMGQY 319
>UNIPROTKB|D4A964 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1595845 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00949247 Ensembl:ENSRNOT00000066938 Uniprot:D4A964
Length = 368
Score = 769 (275.8 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
Identities = 141/245 (57%), Positives = 178/245 (72%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 55 GFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 113
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPA---PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIA 230
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L ++L+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+
Sbjct: 231 SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 276 WGKES 280
WGKES
Sbjct: 291 WGKES 295
Score = 163 (62.4 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 59/242 (24%), Positives = 108/242 (44%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLK---SKG------- 138
+D ++VG+LS ++ + + F+ G +C+++ + P + + S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 139 ----YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
Y FV F + +A A+ AMNG+ + + ++ NW+T P+ +++K ++H
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT--PS--SQKKDTSNH----- 113
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248
F V+ G ++ E + F+PFG I D RV K+ KGY FV
Sbjct: 114 FH------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAPQFPYIY 308
F K A +AI + + G ++ W +T P+ +T + N+ +F +
Sbjct: 162 FYNKLDAENAIVHMGGQWLGGRQIRTNW-------ATRKPPAPKSTQETNTKQLRFEDVV 214
Query: 309 NQ 310
NQ
Sbjct: 215 NQ 216
Score = 152 (58.6 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 49/217 (22%), Positives = 99/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPK--QDTSN---------------HYHIFVGD 102
M + ++++ NWA+ PK Q+T+ + ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 283 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 317
Score = 132 (51.5 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 43
>UNIPROTKB|F1LQ36 [details] [associations]
symbol:Tial1 "Protein Tial1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0007281 "germ cell
development" evidence=IEA] [GO:0008284 "positive regulation of cell
proliferation" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017145 "stem cell division" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1595845 GO:GO:0005634 GO:GO:0000166 GO:GO:0008284
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0007281 GO:GO:0010494
GO:GO:0017145 GeneTree:ENSGT00680000099967 IPI:IPI00555194
Ensembl:ENSRNOT00000027463 Uniprot:F1LQ36
Length = 371
Score = 769 (275.8 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
Identities = 141/245 (57%), Positives = 178/245 (72%)
Query: 36 GCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
G V++ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH
Sbjct: 55 GFSVLQHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNH 113
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI
Sbjct: 114 FHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIV 173
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
M GQWLG R IRTNW+TRKPPA + Q ++TK + F++V NQSSP NCTVYCGG
Sbjct: 174 HMGGQWLGGRQIRTNWATRKPPA---PKSTQETNTKQLRFEDVVNQSSPKNCTVYCGGIA 230
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCF 275
L ++L+ + FSPFG I++IRVF EKGY+FV+F+T E+A HAI S++ T I GH VKC+
Sbjct: 231 SGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCY 290
Query: 276 WGKES 280
WGKES
Sbjct: 291 WGKES 295
Score = 163 (62.4 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 59/242 (24%), Positives = 108/242 (44%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD-PQTLK---SKG------- 138
+D ++VG+LS ++ + + F+ G +C+++ + P + + S G
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEQPDSRRVNSSVGFSVLQHT 62
Query: 139 ----YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
Y FV F + +A A+ AMNG+ + + ++ NW+T P+ +++K ++H
Sbjct: 63 SNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT--PS--SQKKDTSNH----- 113
Query: 195 FDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVK 248
F V+ G ++ E + F+PFG I D RV K+ KGY FV
Sbjct: 114 FH------------VFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVS 161
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAPQFPYIY 308
F K A +AI + + G ++ W +T P+ +T + N+ +F +
Sbjct: 162 FYNKLDAENAIVHMGGQWLGGRQIRTNW-------ATRKPPAPKSTQETNTKQLRFEDVV 214
Query: 309 NQ 310
NQ
Sbjct: 215 NQ 216
Score = 152 (58.6 bits), Expect = 3.9e-08, P = 3.9e-08
Identities = 49/217 (22%), Positives = 99/217 (45%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDP-YAFLEFXXXXXX 59
D S ++VG+L +T E + + F+ G + +V+++ G Y F+ F
Sbjct: 109 DTSNHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDA 168
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPK--QDTSN---------------HYHIFVGD 102
M + ++++ NWA+ PK Q+T+ + ++ G
Sbjct: 169 ENAIVHMGGQWLGGRQIRTNWATRKPPAPKSTQETNTKQLRFEDVVNQSSPKNCTVYCGG 228
Query: 103 LSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL 162
++ + Q +++ F+PFG+I R+ P+ KGY+FV F A +AI ++NG +
Sbjct: 229 IASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHESAAHAIVSVNGTTI 282
Query: 163 GSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
++ W ++ P MT + +Q +++ + +VY
Sbjct: 283 EGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 317
Score = 132 (51.5 bits), Expect = 2.7e-88, Sum P(2) = 2.7e-88
Identities = 27/42 (64%), Positives = 30/42 (71%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITE 43
>ZFIN|ZDB-GENE-030131-1506 [details] [associations]
symbol:tia1 "cytotoxic granule-associated RNA
binding protein 1" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-1506 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:WAVEPGQ
EMBL:CT027545 EMBL:AL928954 EMBL:BC045368 IPI:IPI00511851
RefSeq:NP_997793.1 UniGene:Dr.159520 SMR:Q7ZVY0
Ensembl:ENSDART00000074400 GeneID:793165 KEGG:dre:793165
InParanoid:Q7ZVY0 NextBio:20931339 Uniprot:Q7ZVY0
Length = 386
Score = 870 (311.3 bits), Expect = 4.7e-87, P = 4.7e-87
Identities = 170/317 (53%), Positives = 214/317 (67%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXX 59
M D+ QP TLYVGNL VTE L+ LF QIGP K CK+I + GNDPY F+EF
Sbjct: 1 MMDDEQPKTLYVGNLSRDVTEALIMQLFGQIGPCKSCKMIVDTAGNDPYCFVEFFEHRHA 60
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN R + KE+KVNWA+SP +Q K+DTSNH+H+FVGDLSPEI T ++ AFAPF
Sbjct: 61 AASLAAMNGRKIMGKEVKVNWATSPSSQ-KKDTSNHFHVFVGDLSPEITTDDIRAAFAPF 119
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA
Sbjct: 120 GRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA- 178
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+ ++TK ++FDEV NQSSP+NCTVYCGG L E+L+ + FSPFG I+++RVF
Sbjct: 179 --PKATYETNTKHLSFDEVVNQSSPSNCTVYCGGVTTGLTEQLMRQTFSPFGQIMEVRVF 236
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN-STLAQPSAPTTPQPN 298
+KGY+FV+F + E+A HAI S++ T + GH VKC+WGKE+ + S + Q P +
Sbjct: 237 PDKGYSFVRFNSHESAAHAIVSVNGTSLEGHIVKCYWGKETTDMVSPMQQVQVPQQSKVG 296
Query: 299 STAPQFPYIYNQQMGYW 315
A PY Q G W
Sbjct: 297 FAAQ--PY---GQWGQW 308
>UNIPROTKB|Q800W4 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0042036 "negative regulation of cytokine biosynthetic process"
evidence=IEA] [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
HSSP:P11940 GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 OMA:TSAPWMG
UniGene:Gga.12064 UniGene:Gga.8269 EMBL:AADN02059907
EMBL:AADN02059908 EMBL:AADN02059909 EMBL:AY189903 IPI:IPI00577572
RefSeq:NP_001244132.1 SMR:Q800W4 STRING:Q800W4
Ensembl:ENSGALT00000022506 GeneID:771327 KEGG:gga:771327
InParanoid:Q800W4 NextBio:20921528 Uniprot:Q800W4
Length = 372
Score = 865 (309.6 bits), Expect = 1.6e-86, P = 1.6e-86
Identities = 168/314 (53%), Positives = 216/314 (68%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAS 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE 121
MN R + KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPFG
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA--- 177
Query: 182 ERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
+ S+TK +++D+V NQSSP+NCTVYCGG L E+L+ + FSPFG I++IRVF +
Sbjct: 178 PKSTYESNTKQLSYDDVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTA 301
KGY+FV+F + E+A HAI S++ T I GH VKC+WGKE+ + + Q + PQ
Sbjct: 238 KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETPDMISPVQQNQIGYPQAYGQW 297
Query: 302 PQFPYIYNQQMGYW 315
Q+ Y N Q+G +
Sbjct: 298 GQW-Y-GNAQLGQY 309
>RGD|1305742 [details] [associations]
symbol:Tia1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0010494 "cytoplasmic
stress granule" evidence=IEA;ISO] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO] [GO:0017148 "negative regulation of
translation" evidence=IEA;ISO] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA;ISO] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CH473957 eggNOG:COG0724
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
CTD:7072 HOVERGEN:HBG105006 EMBL:BC087064 IPI:IPI00563419
RefSeq:NP_001012096.1 UniGene:Rn.198158 SMR:Q5PQR7 STRING:Q5PQR7
Ensembl:ENSRNOT00000023103 GeneID:312510 KEGG:rno:312510
UCSC:RGD:1305742 NextBio:664964 Genevestigator:Q5PQR7
Uniprot:Q5PQR7
Length = 375
Score = 855 (306.0 bits), Expect = 1.8e-85, P = 1.8e-85
Identities = 159/279 (56%), Positives = 202/279 (72%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE 121
MN R + KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPFG
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA--- 177
Query: 182 ERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
+ S+TK +++DEV +QSSP NCTVYCGG L E+L+ + FSPFG I++IRVF +
Sbjct: 178 PKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280
KGY+F++F++ E+A HAI S++ T I GH VKC+WGKE+
Sbjct: 238 KGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKET 276
>UNIPROTKB|F8W8I6 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926358
ProteinModelPortal:F8W8I6 SMR:F8W8I6 PRIDE:F8W8I6
Ensembl:ENST00000282574 ArrayExpress:F8W8I6 Bgee:F8W8I6
Uniprot:F8W8I6
Length = 385
Score = 842 (301.5 bits), Expect = 4.4e-84, P = 4.4e-84
Identities = 169/325 (52%), Positives = 216/325 (66%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSN-----------HYHIFVGDLSPEIETQ 110
MN R + KE+KVNWA++P +Q K+DTS+ H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+K AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTN
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF 230
W+TRKPPA + S+TK +++DEV NQSSP+NCTVYCGG L E+L+ + FSPF
Sbjct: 181 WATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 231 GTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPS 290
G I++IRVF +KGY+FV+F + E+A HAI S++ T I GH VKC+WGKE+ + Q +
Sbjct: 238 GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQN 297
Query: 291 APTTPQPNSTAPQFPYIYNQQMGYW 315
PQP Q+ Y QQ+G +
Sbjct: 298 QIGYPQPYGQWGQW-YGNAQQIGQY 321
>UNIPROTKB|P31483 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0017148 "negative regulation of
translation" evidence=IEA] [GO:0042036 "negative regulation of
cytokine biosynthetic process" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IDA] [GO:0006917 "induction of apoptosis" evidence=TAS]
[GO:0008143 "poly(A) RNA binding" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0006915 EMBL:CH471053
GO:GO:0006917 GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0042036 GO:GO:0048024 eggNOG:COG0724
GO:GO:0008143 HOGENOM:HOG000206748 KO:K13201 EMBL:M77142
EMBL:S70114 EMBL:AC016700 IPI:IPI00291398 IPI:IPI00333996
PIR:A39293 RefSeq:NP_071320.2 RefSeq:NP_071505.2 UniGene:Hs.413123
PDB:3BS9 PDBsum:3BS9 ProteinModelPortal:P31483 SMR:P31483
IntAct:P31483 STRING:P31483 PhosphoSite:P31483 DMDM:206729905
PaxDb:P31483 PRIDE:P31483 Ensembl:ENST00000415783
Ensembl:ENST00000433529 GeneID:7072 KEGG:hsa:7072 UCSC:uc002sgj.4
UCSC:uc002sgk.4 CTD:7072 GeneCards:GC02M070437 HGNC:HGNC:11802
MIM:603518 neXtProt:NX_P31483 PharmGKB:PA36511 HOVERGEN:HBG105006
InParanoid:P31483 OrthoDB:EOG4B5P59 PhylomeDB:P31483 ChiTaRS:TIA1
EvolutionaryTrace:P31483 GenomeRNAi:7072 NextBio:27655
ArrayExpress:P31483 Bgee:P31483 CleanEx:HS_TIA1
Genevestigator:P31483 GermOnline:ENSG00000116001 Uniprot:P31483
Length = 386
Score = 839 (300.4 bits), Expect = 9.1e-84, P = 9.1e-84
Identities = 169/326 (51%), Positives = 218/326 (66%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSN-----------HYHIFVGDLSPEIETQ 110
MN R + KE+KVNWA++P +Q K+DTS+ H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+K AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTN
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF 230
W+TRKPPA + S+TK +++DEV NQSSP+NCTVYCGG L E+L+ + FSPF
Sbjct: 181 WATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 231 GTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES-ENNSTLAQP 289
G I++IRVF +KGY+FV+F + E+A HAI S++ T I GH VKC+WGKE+ + + + Q
Sbjct: 238 GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ 297
Query: 290 SAPTTPQPNSTAPQFPYIYNQQMGYW 315
+ PQP Q+ Y QQ+G +
Sbjct: 298 NQIGYPQPYGQWGQW-YGNAQQIGQY 322
>UNIPROTKB|Q0VBZ6 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein" species:9913 "Bos taurus" [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0042036 "negative
regulation of cytokine biosynthetic process" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 eggNOG:COG0724 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 CTD:7072 HOVERGEN:HBG105006
OrthoDB:EOG4B5P59 OMA:TSAPWMG EMBL:DAAA02031534 EMBL:BC120427
IPI:IPI00707848 RefSeq:NP_001069577.1 UniGene:Bt.91654 SMR:Q0VBZ6
Ensembl:ENSBTAT00000025528 GeneID:538533 KEGG:bta:538533
InParanoid:Q0VBZ6 NextBio:20877426 Uniprot:Q0VBZ6
Length = 384
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 168/326 (51%), Positives = 217/326 (66%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSN-----------HYHIFVGDLSPEIETQ 110
MN R + KE+KVNWA++P +Q K+DTS+ H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+K AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTN
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF 230
W+TRKPPA + S+TK +++DEV NQSSP+NCTVYCGG L E+L+ + FSPF
Sbjct: 181 WATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 231 GTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES-ENNSTLAQP 289
G I++IRVF +KGY+FV+F + E+A HAI S++ T I GH VKC+WGKE+ + + + Q
Sbjct: 238 GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ 297
Query: 290 SAPTTPQPNSTAPQFPYIYNQQMGYW 315
+ PQ Q+ Y QQ+G +
Sbjct: 298 NQIGYPQAYGQWGQW-YGNAQQIGQY 322
>UNIPROTKB|F1PWU8 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 OMA:TSAPWMG EMBL:AAEX03007635
EMBL:AAEX03007634 Ensembl:ENSCAFT00000005363 Uniprot:F1PWU8
Length = 393
Score = 831 (297.6 bits), Expect = 6.4e-83, P = 6.4e-83
Identities = 168/326 (51%), Positives = 217/326 (66%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFYEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSN-----------HYHIFVGDLSPEIETQ 110
MN R + KE+KVNWA++P +Q K+DTS+ H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+K AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTN
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF 230
W+TRKPPA + S+TK +++DEV NQSSP+NCTVYCGG L E+L+ + FSPF
Sbjct: 181 WATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 231 GTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES-ENNSTLAQP 289
G I++IRVF +KGY+FV+F + E+A HAI S++ T I GH VKC+WGKE+ + + + Q
Sbjct: 238 GQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMINPVQQQ 297
Query: 290 SAPTTPQPNSTAPQFPYIYNQQMGYW 315
+ PQ Q+ Y QQ+G +
Sbjct: 298 NQIGYPQAYGQWGQW-YGNAQQIGQY 322
>MGI|MGI:107914 [details] [associations]
symbol:Tia1 "cytotoxic granule-associated RNA binding protein
1" species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0017091 "AU-rich element binding"
evidence=IDA] [GO:0017148 "negative regulation of translation"
evidence=IMP] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IMP] [GO:0048024 "regulation of mRNA
splicing, via spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:107914 GO:GO:0005634 GO:GO:0006915 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036
GO:GO:0048024 GO:GO:0010494 eggNOG:COG0724 HOGENOM:HOG000206748
KO:K13201 CTD:7072 HOVERGEN:HBG105006 OrthoDB:EOG4B5P59 EMBL:U00689
EMBL:U55862 IPI:IPI00132462 PIR:S72435 RefSeq:NP_035715.1
UniGene:Mm.333219 PDB:2DGO PDB:2RNE PDBsum:2DGO PDBsum:2RNE
ProteinModelPortal:P52912 SMR:P52912 STRING:P52912
PhosphoSite:P52912 PaxDb:P52912 PRIDE:P52912
Ensembl:ENSMUST00000095753 GeneID:21841 KEGG:mmu:21841
InParanoid:P52912 OMA:TSAPWMG EvolutionaryTrace:P52912
NextBio:301304 Bgee:P52912 Genevestigator:P52912
GermOnline:ENSMUSG00000071337 Uniprot:P52912
Length = 386
Score = 824 (295.1 bits), Expect = 3.6e-82, P = 3.6e-82
Identities = 159/290 (54%), Positives = 202/290 (69%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSN-----------HYHIFVGDLSPEIETQ 110
MN R + KE+KVNWA++P +Q K+DTS+ H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+K AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTN
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 171 WSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF 230
W+TRKPPA + S+TK +++DEV +QSSP NCTVYCGG L E+L+ + FSPF
Sbjct: 181 WATRKPPA---PKSTYESNTKQLSYDEVVSQSSPNNCTVYCGGVTSGLTEQLMRQTFSPF 237
Query: 231 GTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280
G I++IRVF +KGY+FV+F++ E+A HAI S++ T I GH VKC+WGKE+
Sbjct: 238 GQIMEIRVFPDKGYSFVRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKET 287
>UNIPROTKB|D4A6U8 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
OrthoDB:EOG4B5P59 IPI:IPI00778030 ProteinModelPortal:D4A6U8
Ensembl:ENSRNOT00000041366 Uniprot:D4A6U8
Length = 382
Score = 817 (292.7 bits), Expect = 2.0e-81, P = 2.0e-81
Identities = 158/286 (55%), Positives = 200/286 (69%)
Query: 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXX 65
P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAA 61
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSN-----------HYHIFVGDLSPEIETQTLKE 114
MN R + KE+KVNWA++P +Q K+DTS+ H+H+FVGDLSPEI T+ +K
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTEDIKA 120
Query: 115 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174
AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TR
Sbjct: 121 AFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATR 180
Query: 175 KPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV 234
KPPA + S+TK +++DEV +QSSP NCTVYCGG L E+L+ + FSPFG I+
Sbjct: 181 KPPA---PKSTYESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIM 237
Query: 235 DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280
+IRVF +KGY+F++F++ E+A HAI S++ T I GH VKC+WGKE+
Sbjct: 238 EIRVFPDKGYSFIRFSSHESAAHAIVSVNGTTIEGHVVKCYWGKET 283
>UNIPROTKB|C9JTN7 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOGENOM:HOG000206748
EMBL:AC016700 HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00927286
ProteinModelPortal:C9JTN7 SMR:C9JTN7 STRING:C9JTN7
Ensembl:ENST00000445587 ArrayExpress:C9JTN7 Bgee:C9JTN7
Uniprot:C9JTN7
Length = 285
Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
Identities = 144/249 (57%), Positives = 179/249 (71%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE 121
MN R + KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPFG
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGR 120
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA
Sbjct: 121 ISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA--- 177
Query: 182 ERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
+ S+TK +++DEV NQSSP+NCTVYCGG L E+L+ + FSPFG I++IRVF +
Sbjct: 178 PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD 237
Query: 242 KGYAFVKFT 250
KGY+FV+ T
Sbjct: 238 KGYSFVRQT 246
Score = 148 (57.2 bits), Expect = 5.6e-08, P = 5.6e-08
Identities = 51/199 (25%), Positives = 88/199 (44%)
Query: 119 FGEISNCRIVRD-PQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
F +I C+ + T + Y FV F + A A+ AMNG+ + + ++ NW+T P
Sbjct: 27 FSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATT--P 84
Query: 178 AMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237
+ +++K ++H F V+ G ++ E + F+PFG I D R
Sbjct: 85 S--SQKKDTSNH-----FH------------VFVGDLSPEITTEDIKAAFAPFGRISDAR 125
Query: 238 VFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSA 291
V K+ KGY FV F K A +AI+ + + G ++ W +T P+
Sbjct: 126 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW-------ATRKPPAP 178
Query: 292 PTTPQPNSTAPQFPYIYNQ 310
+T + N+ + + NQ
Sbjct: 179 KSTYESNTKQLSYDEVVNQ 197
>WB|WBGene00015943 [details] [associations]
symbol:tiar-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0002009
"morphogenesis of an epithelium" evidence=IMP] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040007 "growth" evidence=IMP] [GO:0002119 "nematode larval
development" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0040011 "locomotion" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0002009 GO:GO:0040007 GO:GO:0002119 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0010171 GO:GO:0040011 GO:GO:0000003
GO:GO:0003676 EMBL:FO080599 HSSP:P11940
GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748 KO:K13201
GeneID:173967 KEGG:cel:CELE_C18A3.5 UCSC:C18A3.5f.1 CTD:173967
NextBio:881893 RefSeq:NP_495121.1 ProteinModelPortal:Q95QV8
SMR:Q95QV8 IntAct:Q95QV8 STRING:Q95QV8 PRIDE:Q95QV8
EnsemblMetazoa:C18A3.5a WormBase:C18A3.5a InParanoid:Q95QV8
OMA:WAVEPGQ ArrayExpress:Q95QV8 Uniprot:Q95QV8
Length = 408
Score = 744 (267.0 bits), Expect = 1.1e-73, P = 1.1e-73
Identities = 140/281 (49%), Positives = 189/281 (67%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXXXXX 65
+P TLYVGNLD +VTE+ + LF+QIG V KVI + NDPYAF+EF
Sbjct: 44 EPRTLYVGNLDSTVTEDFIATLFNQIGSVTKTKVIFDGSNDPYAFVEFSDHGQASQALQT 103
Query: 66 MNKRVFLEKEMKVNWASSPGNQP-KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MNKR+ L++EMKVNWA PG Q K DT+ H+H+FVGDLS E++ Q L+EAF PFG++S+
Sbjct: 104 MNKRLLLDREMKVNWAVEPGQQQSKIDTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSD 163
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+++RD T KSKGY FVS+ K+ EAE AI MNGQWLG R+IRTNW+TRKP +++
Sbjct: 164 AKVIRDTNTTKSKGYGFVSYPKREEAERAIEQMNGQWLGRRTIRTNWATRKP----GDQE 219
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGY 244
+ SH ++DE+YNQ+S N +VY G L E+ + + F+ FG I ++R+FK +GY
Sbjct: 220 KP-SHYNEKSYDEIYNQTSGDNTSVYVGNIAS-LTEDEIRQGFASFGRITEVRIFKMQGY 277
Query: 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285
AFVKF K+ A AI ++N D+ G V+C WGK + T
Sbjct: 278 AFVKFDNKDAAAKAIVQMNNQDVGGQLVRCSWGKTGDTGKT 318
Score = 145 (56.1 bits), Expect = 3.0e-07, P = 3.0e-07
Identities = 52/181 (28%), Positives = 77/181 (42%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXX 59
D ++ ++VG+L V + L F G V KVIR+ Y F+ +
Sbjct: 130 DTTRHFHVFVGDLSSEVDNQKLREAFQPFGDVSDAKVIRDTNTTKSKGYGFVSYPKREEA 189
Query: 60 XXXXXXMNKRVFLEKEMKVNWAS-SPGNQPKQDTSNH------YHIFVGD-LSPEI-ETQ 110
MN + + ++ NWA+ PG+Q K N Y+ GD S +
Sbjct: 190 ERAIEQMNGQWLGRRTIRTNWATRKPGDQEKPSHYNEKSYDEIYNQTSGDNTSVYVGNIA 249
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+L E G S RI + + K +GYAFV F K A AI MN Q +G + +R +
Sbjct: 250 SLTEDEIRQGFASFGRIT-EVRIFKMQGYAFVKFDNKDAAAKAIVQMNNQDVGGQLVRCS 308
Query: 171 W 171
W
Sbjct: 309 W 309
>UNIPROTKB|D4A7H4 [details] [associations]
symbol:Tia1 "Protein Tia1" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1305742 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00214634 ProteinModelPortal:D4A7H4
Ensembl:ENSRNOT00000023323 Uniprot:D4A7H4
Length = 281
Score = 743 (266.6 bits), Expect = 1.4e-73, P = 1.4e-73
Identities = 142/245 (57%), Positives = 176/245 (71%)
Query: 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXX 65
P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 PKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAA 61
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN R + KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPFG IS+
Sbjct: 62 MNGRKIMGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDA 120
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA +
Sbjct: 121 RVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKPPA---PKST 177
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYA 245
S+TK +++DEV +QSSP NCTVYCGG L E+L+ + FSPFG I++IRVF +KGY+
Sbjct: 178 YESNTKQLSYDEVVSQSSPGNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPDKGYS 237
Query: 246 FVKFT 250
F++ T
Sbjct: 238 FIRQT 242
Score = 143 (55.4 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 50/199 (25%), Positives = 88/199 (44%)
Query: 119 FGEISNCRIVRD-PQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
F +I C+ + T + Y FV F + A A+ AMNG+ + + ++ NW+T P
Sbjct: 23 FSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGRKIMGKEVKVNWATT--P 80
Query: 178 AMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237
+ +++K ++H F V+ G ++ E + F+PFG I D R
Sbjct: 81 S--SQKKDTSNH-----FH------------VFVGDLSPEITTEDIKAAFAPFGRISDAR 121
Query: 238 VFKE------KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSA 291
V K+ KGY FV F K A +AI+ + + G ++ W +T P+
Sbjct: 122 VVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNW-------ATRKPPAP 174
Query: 292 PTTPQPNSTAPQFPYIYNQ 310
+T + N+ + + +Q
Sbjct: 175 KSTYESNTKQLSYDEVVSQ 193
>FB|FBgn0085383 [details] [associations]
symbol:CG34354 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014297 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 GeneTree:ENSGT00680000099967
KO:K13201 RefSeq:NP_001097953.1 UniGene:Dm.16369
ProteinModelPortal:A8JPX0 SMR:A8JPX0 EnsemblMetazoa:FBtr0112564
GeneID:5740528 KEGG:dme:Dmel_CG34354 UCSC:CG34354-RA
FlyBase:FBgn0085383 InParanoid:A8JPX0 OMA:KDAFTPF OrthoDB:EOG4FFBJQ
PhylomeDB:A8JPX0 GenomeRNAi:5740528 NextBio:20891566 Bgee:A8JPX0
Uniprot:A8JPX0
Length = 525
Score = 739 (265.2 bits), Expect = 3.6e-73, P = 3.6e-73
Identities = 166/316 (52%), Positives = 197/316 (62%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
GN K + +HIFVGDLS EIETQ LK+AF PFGEIS+CR+VRDPQTLKSKGY FVSF
Sbjct: 88 GNNSKPE---QFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSF 144
Query: 145 VKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSP 204
VKK+EAE AITAMNGQWLGSRSIRTNW+TRKPPA + + + K +TFDEVYNQSSP
Sbjct: 145 VKKSEAETAITAMNGQWLGSRSIRTNWATRKPPAT-----KADMNAKPLTFDEVYNQSSP 199
Query: 205 TNCTVYCGGFGKDL----NEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIE 260
TNCTVYCGG L NEE++ K FSP+GTI +IRVFK+KGYAFV+F+TKE ATHAI
Sbjct: 200 TNCTVYCGGINGALSGFLNEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIV 259
Query: 261 SIHNTDINGHTVKCFWGKES--ENN-STLAQPS-APTTPQPNSTAPQFPYIYNQQM-GYW 315
+++NT+IN VKC WGKES N+ S +A + A P ++ A Y QQ+ GYW
Sbjct: 260 AVNNTEINQQPVKCAWGKESGDPNHMSAIAGGALAQGFPFGSAAAAAAAAAYGQQVAGYW 319
Query: 316 XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVGRQVPGWQGIPGAQ-PTAQQMAVAQA 374
G Q G+ G+ G Q P Q Q
Sbjct: 320 YPPAPTYPAAAPASALQPGQFLQGMQGFTYGQFAGYQQAGYMGM-GVQLPGTWQSVPPQP 378
Query: 375 QPSMMAAYAMQQFPTQ 390
Q + AA Q TQ
Sbjct: 379 QLASAAAATAPQI-TQ 393
Score = 131 (51.2 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 43/178 (24%), Positives = 74/178 (41%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFXXXXXXXXXXXXM 66
++VG+L + + L F+ G + C+V+R+P + Y F+ F M
Sbjct: 98 IFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVKKSEAETAITAM 157
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIF---VGDLSPE---IETQTLKEAFAPF- 119
N + + ++ NWA+ K D + F SP + + A + F
Sbjct: 158 NGQWLGSRSIRTNWATRKPPATKADMNAKPLTFDEVYNQSSPTNCTVYCGGINGALSGFL 217
Query: 120 -GEI-----SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171
EI S +++ + K KGYAFV F K A +AI A+N + + ++ W
Sbjct: 218 NEEILQKTFSPYGTIQEIRVFKDKGYAFVRFSTKEAATHAIVAVNNTEINQQPVKCAW 275
Score = 114 (45.2 bits), Expect = 2.7e-05, Sum P(2) = 2.7e-05
Identities = 33/119 (27%), Positives = 50/119 (42%)
Query: 198 VYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV------FKEKGYAFVKFTT 251
V N S P ++ G ++ + + F+PFG I D RV K KGY FV F
Sbjct: 87 VGNNSKPEQFHIFVGDLSAEIETQQLKDAFTPFGEISDCRVVRDPQTLKSKGYGFVSFVK 146
Query: 252 KETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAPQFPYIYNQ 310
K A AI +++ + +++ W +P A T N+ F +YNQ
Sbjct: 147 KSEAETAITAMNGQWLGSRSIRTNWATR--------KPPA-TKADMNAKPLTFDEVYNQ 196
Score = 58 (25.5 bits), Expect = 3.4e-07, Sum P(2) = 3.4e-07
Identities = 20/51 (39%), Positives = 26/51 (50%)
Query: 349 VGRQVPG-WQGIP-------GAQPTAQQM--AVAQAQPSM--MAAYAMQQF 387
+G Q+PG WQ +P A TA Q+ +V A P + AY MQQF
Sbjct: 363 MGVQLPGTWQSVPPQPQLASAAAATAPQITQSVGSALPQAAGVVAYPMQQF 413
>FB|FBgn0085391 [details] [associations]
symbol:CG34362 species:7227 "Drosophila melanogaster"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0000381 GeneTree:ENSGT00680000099967
RefSeq:NP_001163754.1 UniGene:Dm.13924 ProteinModelPortal:E1JIZ9
SMR:E1JIZ9 EnsemblMetazoa:FBtr0301397 GeneID:43362
KEGG:dme:Dmel_CG34362 FlyBase:FBgn0085391 GenomeRNAi:43362
NextBio:833552 Bgee:E1JIZ9 Uniprot:E1JIZ9
Length = 800
Score = 703 (252.5 bits), Expect = 2.4e-69, P = 2.4e-69
Identities = 136/214 (63%), Positives = 163/214 (76%)
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+HIFVGDLS EIETQ L+EAF PFGEIS+CR+VRDPQTLKSKGY FVSF+KK+EAE+AIT
Sbjct: 461 FHIFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAIT 520
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
AMNGQWLGSRSIRTNW+TRKPPA ++N K +TFDEVYNQSSP+NCTVY GG
Sbjct: 521 AMNGQWLGSRSIRTNWATRKPPA-----SKEN--IKPLTFDEVYNQSSPSNCTVYVGGVN 573
Query: 216 KDL---NEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
L +EE++ K F+P+G I +IRVFK+KGYAFV+F+TKE ATHAI +HNT+IN V
Sbjct: 574 SALTALSEEVLQKTFAPYGAIQEIRVFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPV 633
Query: 273 KCFWGKESENNSTLAQPSAPTTPQPNSTAPQFPY 306
KC WGKES + + + + A FPY
Sbjct: 634 KCSWGKESGDPNNAQTIATQALNSAAAAAAGFPY 667
Score = 131 (51.2 bits), Expect = 3.0e-05, P = 3.0e-05
Identities = 38/178 (21%), Positives = 78/178 (43%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFXXXXXXXXXXXXM 66
++VG+L + + L F+ G + C+V+R+P + Y F+ F M
Sbjct: 463 IFVGDLSSEIETQQLREAFTPFGEISDCRVVRDPQTLKSKGYGFVSFIKKSEAESAITAM 522
Query: 67 NKRVFLEKEMKVNWASS--PGNQ----P-------KQDTSNHYHIFVGDLSPEIETQTLK 113
N + + ++ NWA+ P ++ P Q + ++ ++VG ++ + + +
Sbjct: 523 NGQWLGSRSIRTNWATRKPPASKENIKPLTFDEVYNQSSPSNCTVYVGGVNSALTALSEE 582
Query: 114 EAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171
F + +R K KGYAFV F K A +AI ++ + ++ ++ +W
Sbjct: 583 VLQKTFAPYGAIQEIR---VFKDKGYAFVRFSTKEAATHAIVGVHNTEINAQPVKCSW 637
>WB|WBGene00012904 [details] [associations]
symbol:tiar-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HSSP:P11940 EMBL:AL110485 GeneTree:ENSGT00680000099967
HOGENOM:HOG000206748 KO:K13201 RefSeq:NP_496718.1 UniGene:Cel.14057
ProteinModelPortal:Q9U2F5 SMR:Q9U2F5 IntAct:Q9U2F5 PaxDb:Q9U2F5
EnsemblMetazoa:Y46G5A.13 GeneID:174909 KEGG:cel:CELE_Y46G5A.13
UCSC:Y46G5A.13 CTD:174909 WormBase:Y46G5A.13 InParanoid:Q9U2F5
NextBio:886000 Uniprot:Q9U2F5
Length = 434
Score = 651 (234.2 bits), Expect = 7.6e-64, P = 7.6e-64
Identities = 134/293 (45%), Positives = 180/293 (61%)
Query: 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXXXXXM 66
P TL+V NLD ++T+E L LF+QIG V K+I E NDPYAF+EF
Sbjct: 39 PRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGLNDPYAFVEFSDHNQATLALQSH 98
Query: 67 NKRVFLEKEMKVNWA---SSPG-NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI 122
N R LEKEM V WA PG N+ K +TS H+H+FVGDL EI++ L+EAF FGE+
Sbjct: 99 NGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCSEIDSTKLREAFVKFGEV 158
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP----- 177
S +I+RD T K KGY FVS+ ++ +AE AI MNG WLG R+IRTNW+TRKP
Sbjct: 159 SEAKIIRDNNTNKGKGYGFVSYPRREDAERAIDEMNGAWLGRRTIRTNWATRKPDEDGER 218
Query: 178 -AMTNERK------RQNSHTKTI-TFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSP 229
+R+ R H ++ T+DE++NQ++ N +VY G +L E+ + + F
Sbjct: 219 GGDRGDRRGGGGGGRDRYHNQSEKTYDEIFNQAAADNTSVYVGNIA-NLGEDEIRRAFDR 277
Query: 230 FGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282
FG I ++R FK +GYAFVKF TKE+A AI ++N DI G V+C WGK ++
Sbjct: 278 FGPINEVRTFKIQGYAFVKFETKESAARAIVQMNNADIGGQIVRCSWGKSGDS 330
Score = 122 (48.0 bits), Expect = 0.00013, P = 0.00013
Identities = 45/196 (22%), Positives = 81/196 (41%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A G Q + + +FV +L P I + L F G + +I+ + + YA
Sbjct: 25 AEREGFQLASGSEDPRTLFVANLDPAITDEFLATLFNQIGAVMKAKIIFEGL---NDPYA 81
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYN 200
FV F +A A+ + NG+ L + + W+ N K + S + ++ +
Sbjct: 82 FVEFSDHNQATLALQSHNGRELLEKEMHVTWAFEPREPGENRSKPETSRHFHVFVGDLCS 141
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIE 260
+ T FG +++E +K+ I D K KGY FV + +E A AI+
Sbjct: 142 EIDSTKLREAFVKFG-EVSE---AKI------IRDNNTNKGKGYGFVSYPRREDAERAID 191
Query: 261 SIHNTDINGHTVKCFW 276
++ + T++ W
Sbjct: 192 EMNGAWLGRRTIRTNW 207
>UNIPROTKB|Q49AS9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 EMBL:AC012468
HOVERGEN:HBG105006 RefSeq:NP_001029097.1 RefSeq:NP_003243.1
UniGene:Hs.501203 GeneID:7073 KEGG:hsa:7073 CTD:7073
HGNC:HGNC:11804 PharmGKB:PA36513 ChiTaRS:TIAL1 GenomeRNAi:7073
NextBio:27661 EMBL:BC030025 IPI:IPI01013673 SMR:Q49AS9
STRING:Q49AS9 Ensembl:ENST00000369092 UCSC:uc001lek.1
Uniprot:Q49AS9
Length = 252
Score = 511 (184.9 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 93/157 (59%), Positives = 117/157 (74%)
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNER 183
+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTNW+TRKPPA +
Sbjct: 2 DARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMGGQWLGGRQIRTNWATRKPPA---PK 58
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
Q ++TK + F++V NQSSP NCTVYCGG L ++L+ + FSPFG I++IRVF EKG
Sbjct: 59 STQENNTKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG 118
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280
Y+FV+F+T E+A HAI S++ T I GH VKC+WGKES
Sbjct: 119 YSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKES 155
Score = 116 (45.9 bits), Expect = 3.0e-06, Sum P(2) = 3.0e-06
Identities = 28/110 (25%), Positives = 58/110 (52%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
Q + + ++ G ++ + Q +++ F+PFG+I R+ P+ KGY+FV F
Sbjct: 76 QSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KGYSFVRFSTHES 129
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
A +AI ++NG + ++ W ++ P MT + +Q +++ + +VY
Sbjct: 130 AAHAIVSVNGTTIEGHVVKCYWG-KESPDMT-KNFQQVDYSQWGQWSQVY 177
Score = 54 (24.1 bits), Expect = 6.9e-53, Sum P(2) = 6.9e-53
Identities = 13/35 (37%), Positives = 14/35 (40%)
Query: 356 WQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
W G GAQP Q P A Y M + TQ
Sbjct: 218 WMGGFGAQPPQGQAPPPVIPPPNQAGYGMASYQTQ 252
>UNIPROTKB|Q96B58 [details] [associations]
symbol:TIA1 "TIA1 cytotoxic granule-associated RNA binding
protein, isoform CRA_d" species:9606 "Homo sapiens" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CH471053
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295
HSSP:P11940 EMBL:AC016700 UniGene:Hs.413123 HGNC:HGNC:11802
ChiTaRS:TIA1 EMBL:BC015944 IPI:IPI00743479 SMR:Q96B58 STRING:Q96B58
Ensembl:ENST00000416149 UCSC:uc002sgm.3 Uniprot:Q96B58
Length = 214
Score = 523 (189.2 bits), Expect = 2.8e-50, P = 2.8e-50
Identities = 105/188 (55%), Positives = 127/188 (67%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSN-----------HYHIFVGDLSPEIETQ 110
MN R + KE+KVNWA++P +Q K+DTS+ H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+K AFAPFG IS+ R+V+D T KSKGY FVSF K +AENAI M GQWLG R IRTN
Sbjct: 121 DIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTN 180
Query: 171 WSTRKPPA 178
W+TRKPPA
Sbjct: 181 WATRKPPA 188
Score = 214 (80.4 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 52/185 (28%), Positives = 92/185 (49%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG+LS ++ + + F+ G NC+++ D T + Y FV F + A A+ AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
NG+ + + ++ NW+T T +++++ + T+ V Q S + V+ G +
Sbjct: 67 NGRKIMGKEVKVNWAT------TPSSQKKDTSSSTV----VSTQRSQDHFHVFVGDLSPE 116
Query: 218 LNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESIHNTDINGHT 271
+ E + F+PFG I D RV K+ KGY FV F K A +AI+ + + G
Sbjct: 117 ITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQ 176
Query: 272 VKCFW 276
++ W
Sbjct: 177 IRTNW 181
>ASPGD|ASPL0000061196 [details] [associations]
symbol:AN10164 species:162425 "Emericella nidulans"
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330 GO:GO:0003676
ProteinModelPortal:C8VTL0 EnsemblFungi:CADANIAT00001543 OMA:QNTNPIP
Uniprot:C8VTL0
Length = 477
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 108/322 (33%), Positives = 170/322 (52%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDP---YAFLEFXXXXXX 59
E LYVG LD VTE++L +F G V K+I + N Y F+EF
Sbjct: 86 EPNKRALYVGGLDPRVTEDILKQIFETTGHVISVKIIPDKNFNSKGANYGFVEFDDPGAA 145
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N R + E++VNWA K+DTSNH+HIFVGDLS E+ + L +AF+ F
Sbjct: 146 ERAMQTLNGRRIHQSEIRVNWAYQSNTANKEDTSNHFHIFVGDLSNEVNDEVLLQAFSAF 205
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK-PPA 178
G +S R++ D +T +S+GY FV+F ++A+AE A+T+M+G+WLGSR+IR NW+ +K P+
Sbjct: 206 GSVSEARVMWDMKTGRSRGYGFVAFRERADAEKALTSMDGEWLGSRAIRCNWANQKGQPS 265
Query: 179 MTNERKRQ-----------NSHTKTI---TFDEVYNQSSPTNCTVYCGGFGKDLNEELVS 224
++ ++ + H T ++D V Q+ T Y G + +
Sbjct: 266 ISQQQAMAAMGMTPTTPFGHHHFPTHGIQSYDMVVQQTPAWQTTCYVGNLTPYTTQNDIV 325
Query: 225 KVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNS 284
+F FG +++ R+ ++G+AF+K T E A AI ++ ++NG +KC WGK+
Sbjct: 326 PLFQNFGYVIETRMQADRGFAFIKMDTHENAASAICQLNGYNVNGRPLKCSWGKDRPPTG 385
Query: 285 TLAQPSAPTTPQPNSTAPQFPY 306
P +++P PY
Sbjct: 386 QFDNFPGQQANSPFASSPG-PY 406
>UNIPROTKB|F1SF34 [details] [associations]
symbol:F1SF34 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:CU929885
Ensembl:ENSSSCT00000017014 OMA:SPDIETH Uniprot:F1SF34
Length = 250
Score = 453 (164.5 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 86/158 (54%), Positives = 111/158 (70%)
Query: 124 NCRIVRDPQTLKSKGYAFVSFV-KKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
+ R+V+D T KSKGY VSF K +AENAI M GQWLG R I+T+W+TRKPPA
Sbjct: 2 DARVVKDMATGKSKGYGSVSFFYNKLDAENAIVRMGGQWLGGRQIKTSWATRKPPA---P 58
Query: 183 RKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
+ Q ++TK + F++V NQSS NCTVYCGG L ++L+ + FSPFG I++IRVF EK
Sbjct: 59 KSTQENNTKQLKFEDVVNQSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEK 118
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES 280
Y+FV+F+T +A HAI S+ T I G VKC+WGKES
Sbjct: 119 RYSFVRFSTHGSAAHAIVSVTGTTIEGRVVKCYWGKES 156
Score = 115 (45.5 bits), Expect = 4.0e-05, Sum P(2) = 4.0e-05
Identities = 28/115 (24%), Positives = 55/115 (47%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
Q +S + ++ G ++ + Q +++ F+PFG+I R+ P+ K Y+FV F
Sbjct: 77 QSSSKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVF--PE----KRYSFVRFSTHGS 130
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSP 204
A +AI ++ G + R ++ W ++ P MT R ++ + + SP
Sbjct: 131 AAHAIVSVTGTTIEGRVVKCYWG-KESPDMTENYSRWGQWSQVYGDPQEHGDLSP 184
Score = 44 (20.5 bits), Expect = 9.7e-46, Sum P(2) = 9.7e-46
Identities = 11/30 (36%), Positives = 12/30 (40%)
Query: 361 GAQPTAQQMAVAQAQPSMMAAYAMQQFPTQ 390
GAQP Q P A Y M + TQ
Sbjct: 221 GAQPPQGQAPPPVIPPPNQAGYGMASYRTQ 250
>UNIPROTKB|G4N7J4 [details] [associations]
symbol:MGG_06400 "Nuclear and cytoplasmic polyadenylated
RNA-binding protein pub1" species:242507 "Magnaporthe oryzae 70-15"
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001234
KO:K13201 RefSeq:XP_003717170.1 ProteinModelPortal:G4N7J4
EnsemblFungi:MGG_06400T0 GeneID:2684555 KEGG:mgr:MGG_06400
Uniprot:G4N7J4
Length = 479
Score = 476 (172.6 bits), Expect = 2.7e-45, P = 2.7e-45
Identities = 111/323 (34%), Positives = 174/323 (53%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPY--AFLEFXXXXXXXX 61
E LYVG LD VTE++L +F G V+ K+I + Y F+E+
Sbjct: 81 EPNKRALYVGGLDARVTEDVLRQIFETTGHVQNVKIIPDKNAKGYNYGFVEYDDPGAADR 140
Query: 62 XXXXMNKRVFLEKEMKVNWA-SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N R + E++VNWA + + K+DTSNH+HIFVGDLS E+ + L +AF+ FG
Sbjct: 141 AMQTLNGRRVHQSEIRVNWAYQAATSATKEDTSNHFHIFVGDLSNEVNDEVLTQAFSVFG 200
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK-PPAM 179
+S R++ D +T +S+GY FV+F +++AE A+++M+G+WLGSR+IR NW+ +K P++
Sbjct: 201 SVSEARVMWDMKTGRSRGYGFVAFRDRSDAEKALSSMDGEWLGSRAIRCNWANQKGQPSI 260
Query: 180 TNERKRQ-----------NSHTKTI---TFDEVYNQSSPTNCTVYCGGFGKDLNEELVSK 225
++ + H T +++ V NQ+ T Y G V
Sbjct: 261 AQQQAMSAVGMTPTTPFGHHHFPTHGMQSYEMVVNQTPAYQTTCYVGNLTPYTTANDVVP 320
Query: 226 VFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285
+F FG +V+ R ++G+AF+K + E A AI ++ ++NG +KC WGK+ NST
Sbjct: 321 LFQNFGYVVESRFQADRGFAFIKMDSHENAAQAICGLNGYNVNGRPLKCSWGKDK--NST 378
Query: 286 LAQPSA-PTTP-QPNSTA-PQFP 305
Q + P+ P S P FP
Sbjct: 379 NPQGNFDPSQAFSPQSAGGPGFP 401
>WB|WBGene00007396 [details] [associations]
symbol:tiar-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019722
"calcium-mediated signaling" evidence=IEA] [GO:0016021 "integral to
membrane" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
eggNOG:COG0724 GeneTree:ENSGT00680000099967 EMBL:Z78536
RefSeq:NP_509705.3 ProteinModelPortal:Q93194 SMR:Q93194
EnsemblMetazoa:C07A4.1 GeneID:182350 KEGG:cel:CELE_C07A4.1
UCSC:C07A4.1 CTD:182350 WormBase:C07A4.1 OMA:ASEPPME Uniprot:Q93194
Length = 450
Score = 467 (169.5 bits), Expect = 2.4e-44, P = 2.4e-44
Identities = 93/248 (37%), Positives = 143/248 (57%)
Query: 70 VFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVR 129
+ L++ ++ AS P + + DTS H+H+FVGDLS ++ + LK F FGE+S +++R
Sbjct: 199 IVLQESAVLHSASEPPMEMRIDTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIR 258
Query: 130 DPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSH 189
D QT KSKGY FVSF K AENAI MNG+W+G R++RTNW+ RK +E R
Sbjct: 259 DVQTQKSKGYGFVSFPNKQNAENAIAGMNGKWIGKRAVRTNWAARK----NSEENRDK-- 312
Query: 190 TKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKF 249
+TF++V+N + N +VY G + + + +FS +G I ++R+FK + YAFV++
Sbjct: 313 ---LTFEQVFNSTKADNTSVYVGNISQQTTDADLRDLFSTYGDIAEVRIFKTQRYAFVRY 369
Query: 250 TTKETATHAIESIHNTDINGHTVKCFWGK-ESENNSTLAQ-P-SAPTTPQPNSTAPQFPY 306
KE AT AI ++ ++ G+ V+C WG+ ++ N L P + P P
Sbjct: 370 EKKECATKAIMEMNGKEMAGNQVRCSWGRTQAVPNQALNPLPIDLSSLMMPTMLPTTIPL 429
Query: 307 IYNQQMGY 314
I N + Y
Sbjct: 430 IQNPFLNY 437
Score = 185 (70.2 bits), Expect = 1.0e-11, P = 1.0e-11
Identities = 51/190 (26%), Positives = 92/190 (48%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXX 59
D S+ ++VG+L V+ ELL + F++ G V KVIR+ Y F+ F
Sbjct: 220 DTSKHFHVFVGDLSKDVSNELLKSTFTKFGEVSEAKVIRDVQTQKSKGYGFVSFPNKQNA 279
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDT-----------SNHYHIFVGDLSPEIE 108
MN + ++ ++ NWA+ ++ +D +++ ++VG++S +
Sbjct: 280 ENAIAGMNGKWIGKRAVRTNWAARKNSEENRDKLTFEQVFNSTKADNTSVYVGNISQQTT 339
Query: 109 TQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168
L++ F+ +G+I+ RI K++ YAFV + KK A AI MNG+ + +R
Sbjct: 340 DADLRDLFSTYGDIAEVRI------FKTQRYAFVRYEKKECATKAIMEMNGKEMAGNQVR 393
Query: 169 TNWS-TRKPP 177
+W T+ P
Sbjct: 394 CSWGRTQAVP 403
>TAIR|locus:2087457 [details] [associations]
symbol:AT3G14100 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005829 "cytosol" evidence=RCA] [GO:0006007
"glucose catabolic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP000600 HSSP:P33240 KO:K13201 OMA:WAVEPGQ EMBL:AY139775
EMBL:BT004540 IPI:IPI00517194 RefSeq:NP_188026.1 UniGene:At.22594
UniGene:At.70203 ProteinModelPortal:Q9LJH8 SMR:Q9LJH8 IntAct:Q9LJH8
STRING:Q9LJH8 PRIDE:Q9LJH8 EnsemblPlants:AT3G14100.1 GeneID:820626
KEGG:ath:AT3G14100 TAIR:At3g14100 InParanoid:Q9LJH8
PhylomeDB:Q9LJH8 ProtClustDB:CLSN2682164 Genevestigator:Q9LJH8
Uniprot:Q9LJH8
Length = 427
Score = 461 (167.3 bits), Expect = 1.0e-43, P = 1.0e-43
Identities = 105/309 (33%), Positives = 168/309 (54%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXX 62
D S ++YVGN+ VTE LL +F+ GPV+ K+IR+ + Y F+ +
Sbjct: 54 DPSTCRSVYVGNIHTQVTEPLLQEIFTSTGPVESSKLIRKDKSS-YGFVHYFDRRSAALA 112
Query: 63 XXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI 122
+N R + +KVNWA + G ++DTS+H++IFVGDLSPE+ TL ++F+ F
Sbjct: 113 ILSLNGRHLFGQPIKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDATLYQSFSVFSSC 170
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPA---- 178
S+ R++ D +T +S+G+ FVSF + +A+ AI MNG+WL SR IR NW+T+ +
Sbjct: 171 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWLSSRQIRCNWATKGATSGDDK 230
Query: 179 MTNERKRQNSHTKTITFD--EVYNQSSPTN----CTVYCGGFGKDLNEELVSKVFSPFGT 232
++++ K T + D E N+ +P N TVY G ++ + + + F G
Sbjct: 231 LSSDGKSVVELTTGSSEDGKETLNEETPENNSQFTTVYVGNLAPEVTQLDLHRYFHALGA 290
Query: 233 --IVDIRVFKEKGYAFVKFTTKETATHAIESIHNTD--INGHTVKCFWGKESENNSTLAQ 288
I ++RV ++KG+ FV++ T A AI+ + NT + +KC WG + T +
Sbjct: 291 GVIEEVRVQRDKGFGFVRYNTHPEAALAIQ-MGNTQPYLFNRQIKCSWGNKPTPPGTASN 349
Query: 289 PSAPTTPQP 297
P P P P
Sbjct: 350 PLPPPAPAP 358
>TAIR|locus:2018794 [details] [associations]
symbol:UBP1B "oligouridylate binding protein 1B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC007843 HSSP:P33240
HOGENOM:HOG000206748 KO:K13201 OMA:NGSKQLR ProtClustDB:CLSN2682164
EMBL:AY085705 EMBL:BT026477 IPI:IPI00543090 RefSeq:NP_564018.1
UniGene:At.43816 ProteinModelPortal:Q9LQI9 SMR:Q9LQI9 STRING:Q9LQI9
PRIDE:Q9LQI9 EnsemblPlants:AT1G17370.1 GeneID:838309
KEGG:ath:AT1G17370 TAIR:At1g17370 InParanoid:Q9LQI9
PhylomeDB:Q9LQI9 Genevestigator:Q9LQI9 Uniprot:Q9LQI9
Length = 419
Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
Identities = 105/312 (33%), Positives = 173/312 (55%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXX 62
D S ++YVGN+ + VTE LL +F+ GPV+ CK+IR+ + Y F+ +
Sbjct: 49 DPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKSS-YGFVHYFDRRSAGLA 107
Query: 63 XXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI 122
+N R + +KVNWA + G ++DTS+H++IFVGDLSPE+ L F+ +
Sbjct: 108 ILSLNGRHLFGQPIKVNWAYASGQ--REDTSSHFNIFVGDLSPEVTDAMLFTCFSVYPTC 165
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
S+ R++ D +T +S+G+ FVSF + +A+ AI + G+WLGSR IR NW+T+ T+
Sbjct: 166 SDARVMWDQKTGRSRGFGFVSFRNQQDAQTAIDEITGKWLGSRQIRCNWATK---GATSG 222
Query: 183 RKRQNSHTKTI-------TFD--EVYNQSSPTN----CTVYCGGFGKDLNEELVSKVFSP 229
+Q+S +K++ + D + N +P N TVY G ++++ + + F
Sbjct: 223 EDKQSSDSKSVVELTSGVSEDGKDTTNGEAPENNAQYTTVYVGNLAPEVSQVDLHRHFHS 282
Query: 230 FGT--IVDIRVFKEKGYAFVKFTTKETATHAIESIHNTD--INGHTVKCFWGKESENNST 285
G I ++RV ++KG+ FV+++T A AI+ + NT ++G +KC WG + T
Sbjct: 283 LGAGVIEEVRVQRDKGFGFVRYSTHVEAALAIQ-MGNTHSYLSGRQMKCSWGSKPTPAGT 341
Query: 286 LAQPSAPTTPQP 297
+ P P P P
Sbjct: 342 ASNPLPPPAPAP 353
Score = 118 (46.6 bits), Expect = 0.00033, P = 0.00033
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 85 GNQPKQ-DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
GN P D S ++VG++ ++ L+E FA G + +C+++R ++ Y FV
Sbjct: 42 GNLPPGFDPSTCRSVYVGNIHIQVTEPLLQEVFAGTGPVESCKLIRKEKS----SYGFVH 97
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWS 172
+ + A AI ++NG+ L + I+ NW+
Sbjct: 98 YFDRRSAGLAILSLNGRHLFGQPIKVNWA 126
>TAIR|locus:2014340 [details] [associations]
symbol:UBP1A "oligouridylate-binding protein 1A"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
[GO:0005886 "plasma membrane" evidence=IDA] [GO:0005829 "cytosol"
evidence=RCA] [GO:0006007 "glucose catabolic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002684 GO:GO:0005886 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 KO:K13201 IPI:IPI00516341
RefSeq:NP_849806.1 UniGene:At.23098 ProteinModelPortal:F4HV67
SMR:F4HV67 PRIDE:F4HV67 EnsemblPlants:AT1G54080.2 GeneID:841846
KEGG:ath:AT1G54080 OMA:YEHRHAT PhylomeDB:F4HV67 Uniprot:F4HV67
Length = 430
Score = 433 (157.5 bits), Expect = 9.6e-41, P = 9.6e-41
Identities = 105/331 (31%), Positives = 173/331 (52%)
Query: 7 PTT---LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXXX 63
PTT +Y GN+ VTE LL +F+ GP++ CK+IR+ + Y F+ +
Sbjct: 59 PTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKSS-YGFVHYFDRRCASMAI 117
Query: 64 XXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEIS 123
+N R + MKVNWA + G ++DTS+H++IFVGDLSPE+ L ++F+ F S
Sbjct: 118 MTLNGRHIFGQPMKVNWAYATGQ--REDTSSHFNIFVGDLSPEVTDAALFDSFSAFNSCS 175
Query: 124 N----CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
+ R++ D +T +S+G+ FVSF + +A+ AI MNG+W+ SR IR NW+T+ A
Sbjct: 176 SYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINEMNGKWVSSRQIRCNWATKG--AT 233
Query: 180 TNERKRQNSHTKTITFD--------EVYNQSSPTN----CTVYCGGFGKDLNEELVSKVF 227
E K + + E+ N+ +P N TVY G ++ + + ++F
Sbjct: 234 FGEDKHSSDGKSVVELTNGSSEDGRELSNEDAPENNPQFTTVYVGNLSPEVTQLDLHRLF 293
Query: 228 SPFGT--IVDIRVFKEKGYAFVKFTTKETATHAIESIHNTD--INGHTVKCFWGKESENN 283
G I ++RV ++KG+ FV++ T + A AI+ + N + ++C WG + +
Sbjct: 294 YTLGAGVIEEVRVQRDKGFGFVRYNTHDEAALAIQ-MGNAQPFLFSRQIRCSWGNKPTPS 352
Query: 284 STLAQPSAPTTPQ--PNSTAPQFPYIYNQQM 312
T + P P P P+ +A Y +Q+
Sbjct: 353 GTASNPLPPPAPASVPSLSAMDL-LAYERQL 382
Score = 142 (55.0 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 44/195 (22%), Positives = 88/195 (45%)
Query: 85 GNQPKQ-DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
GN P D + ++ G++ ++ L+E FA G I +C+++R ++ Y FV
Sbjct: 51 GNLPPGFDPTTCRSVYAGNIHTQVTEILLQEIFASTGPIESCKLIRKDKS----SYGFVH 106
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSS 203
+ + A AI +NG+ + + ++ NW+ T +R+ +SH F+ S
Sbjct: 107 YFDRRCASMAIMTLNGRHIFGQPMKVNWAYA-----TGQREDTSSH-----FNIFVGDLS 156
Query: 204 P--TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIES 261
P T+ ++ F N S + + D + + +G+ FV F ++ A AI
Sbjct: 157 PEVTDAALF-DSFSA-FNS--CSSYYRDARVMWDQKTGRSRGFGFVSFRNQQDAQTAINE 212
Query: 262 IHNTDINGHTVKCFW 276
++ ++ ++C W
Sbjct: 213 MNGKWVSSRQIRCNW 227
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 309 (113.8 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 70/187 (37%), Positives = 104/187 (55%)
Query: 10 LYVGNLDVSVTEELLCALFSQIG-PVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXXM 66
LYVGNL S +EE + LFS G PVK K++ + YAF+E+ +
Sbjct: 81 LYVGNLPKSASEETIQELFSVGGNPVKTIKILNDKNKAGFNYAFIEYDTNEVADMALNTL 140
Query: 67 NKRVFLEKEMKVNWA----SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI 122
N R+ + E+KVNWA + GN P ++IFVGDLSPE+ + L+ AF+ F +
Sbjct: 141 NGRLVDDVEIKVNWAFQSAAIAGN-PNNTEEPLFNIFVGDLSPEVNDEGLRNAFSKFESL 199
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
++ D QT +S+GY FV+F +++AE A+ MNG+WL R+IR NW++ K +
Sbjct: 200 KQAHVMWDMQTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQ--QQQQ 257
Query: 183 RKRQNSH 189
+ N H
Sbjct: 258 QHYNNQH 264
Score = 151 (58.2 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 46/216 (21%), Positives = 98/216 (45%)
Query: 73 EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE-ISNCRIVRDP 131
+ E +VN AS+ + ++ SN ++VG+L +T++E F+ G + +I+ D
Sbjct: 59 DDEKQVNAASA--KEGGREVSNKI-LYVGNLPKSASEETIQELFSVGGNPVKTIKILND- 114
Query: 132 QTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTK 191
+ YAF+ + A+ A+ +NG+ + I+ NW+ + N
Sbjct: 115 KNKAGFNYAFIEYDTNEVADMALNTLNGRLVDDVEIKVNWAFQSAAIAGNPNN------- 167
Query: 192 TITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV------DIRVFKEKGYA 245
T + ++N ++ G ++N+E + FS F ++ D++ + +GY
Sbjct: 168 --TEEPLFN--------IFVGDLSPEVNDEGLRNAFSKFESLKQAHVMWDMQTSRSRGYG 217
Query: 246 FVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281
FV F + A A+++++ + G ++C W +
Sbjct: 218 FVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQ 253
Score = 145 (56.1 bits), Expect = 2.3e-40, Sum P(2) = 2.3e-40
Identities = 31/86 (36%), Positives = 45/86 (52%)
Query: 194 TFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKE 253
++D V Q+ TVY G ++ + + FG IVD + E+G AFVK+ T E
Sbjct: 399 SYDIVLRQTPSWQTTVYLGNIAHFTQQQELIPLLQNFGFIVDFKFHPERGCAFVKYDTHE 458
Query: 254 TATHAIESIHNTDINGHTVKCFWGKE 279
A AI + ++NG +KC WGKE
Sbjct: 459 RAALAIIQLAGFNLNGRPLKCGWGKE 484
>UNIPROTKB|I3LRX5 [details] [associations]
symbol:TIA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048024 "regulation of mRNA splicing, via spliceosome"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] [GO:0017148 "negative
regulation of translation" evidence=IEA] [GO:0017091 "AU-rich
element binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 GO:GO:0048024
GeneTree:ENSGT00680000099967 EMBL:CU929337 RefSeq:XP_003481239.1
Ensembl:ENSSSCT00000027073 GeneID:100736894 KEGG:ssc:100736894
OMA:AGPMANQ Uniprot:I3LRX5
Length = 220
Score = 415 (151.1 bits), Expect = 7.8e-39, P = 7.8e-39
Identities = 81/160 (50%), Positives = 109/160 (68%)
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGK 216
M GQWLG R IRTNW+TRKPPA + S+TK +++DEV NQSSP+NCTVYCGG
Sbjct: 1 MGGQWLGGRQIRTNWATRKPPA---PKSTYESNTKQLSYDEVVNQSSPSNCTVYCGGVTS 57
Query: 217 DLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFW 276
L E+L+ + FSPFG I++IRVF +KGY+FV+F + E+A HAI S++ T I GH VKC+W
Sbjct: 58 GLTEQLMRQTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 117
Query: 277 GKES-ENNSTLAQPSAPTTPQPNSTAPQFPYIYNQQMGYW 315
GKE+ + + + Q + PQ Q+ Y QQ+G +
Sbjct: 118 GKETLDMINPVQQQNQIGYPQAYGQWGQW-YGNAQQIGQY 156
Score = 117 (46.2 bits), Expect = 0.00010, P = 0.00010
Identities = 29/112 (25%), Positives = 56/112 (50%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
Q + ++ ++ G ++ + Q +++ F+PFG+I R+ D KGY+FV F
Sbjct: 42 QSSPSNCTVYCGGVTSGLTEQLMRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHES 95
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQ 201
A +AI ++NG + ++ W ++ M N ++QN I + + Y Q
Sbjct: 96 AAHAIVSVNGTTIEGHVVKCYWG-KETLDMINPVQQQNQ----IGYPQAYGQ 142
>UNIPROTKB|H7BY49 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 Ensembl:ENST00000361692 Uniprot:H7BY49
Length = 152
Score = 411 (149.7 bits), Expect = 2.1e-38, P = 2.1e-38
Identities = 80/138 (57%), Positives = 97/138 (70%)
Query: 11 YVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNKR 69
YVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF MN R
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAAALAAMNGR 61
Query: 70 VFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVR 129
+ KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPFG IS+ R+V+
Sbjct: 62 KIMGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVK 120
Query: 130 DPQTLKSKGYAFVSFVKK 147
D T KSKGY FVSF K
Sbjct: 121 DMATGKSKGYGFVSFFNK 138
Score = 137 (53.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 40/154 (25%), Positives = 74/154 (48%)
Query: 99 FVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158
+VG+LS ++ + + F+ G NC+++ D T + Y FV F + A A+ AMN
Sbjct: 2 YVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAMN 59
Query: 159 GQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDL 218
G+ + + ++ NW+T P ++++K ++H D + + + + FG+ +
Sbjct: 60 GRKIMGKEVKVNWATT-P---SSQKKDTSNHFHVFVGD-LSPEITTEDIKAAFAPFGR-I 113
Query: 219 NEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTK 252
++ V K D+ K KGY FV F K
Sbjct: 114 SDARVVK---------DMATGKSKGYGFVSFFNK 138
>UNIPROTKB|E7ETJ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00647436 ProteinModelPortal:E7ETJ9 SMR:E7ETJ9
Ensembl:ENST00000412524 ArrayExpress:E7ETJ9 Bgee:E7ETJ9
Uniprot:E7ETJ9
Length = 132
Score = 403 (146.9 bits), Expect = 1.5e-37, P = 1.5e-37
Identities = 76/132 (57%), Positives = 92/132 (69%)
Query: 39 VIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHI 98
+ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH+H+
Sbjct: 2 ITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNHFHV 60
Query: 99 FVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158
FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K +AENAI M
Sbjct: 61 FVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNKLDAENAIVHMG 120
Query: 159 GQWLGSRSIRTN 170
GQWLG R IRTN
Sbjct: 121 GQWLGGRQIRTN 132
Score = 105 (42.0 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 35/135 (25%), Positives = 63/135 (46%)
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV F + +A A+ AMNG+ + + ++ NW+T P ++++K ++H D +
Sbjct: 11 YCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATT-P---SSQKKDTSNHFHVFVGD-L 65
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHA 258
+ + + FGK +++ V K D+ K KGY FV F K A +A
Sbjct: 66 SPEITTEDIKSAFAPFGK-ISDARVVK---------DMATGKSKGYGFVSFYNKLDAENA 115
Query: 259 IESIHNTDINGHTVK 273
I + + G ++
Sbjct: 116 IVHMGGQWLGGRQIR 130
>SGD|S000004961 [details] [associations]
symbol:PUB1 "Poly (A)+ RNA-binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003729 "mRNA binding" evidence=IMP;IDA] [GO:0043488
"regulation of mRNA stability" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000004961 GO:GO:0005634 GO:GO:0008266 GO:GO:0000184
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:BK006947
GO:GO:0043488 GO:GO:0010494 GO:GO:0034063 eggNOG:COG0724
EMBL:L13725 EMBL:L20767 EMBL:L01797 EMBL:Z71292 PIR:S62928
RefSeq:NP_014382.1 PDB:2LA4 PDB:3MD1 PDB:3MD3 PDBsum:2LA4
PDBsum:3MD1 PDBsum:3MD3 ProteinModelPortal:P32588 SMR:P32588
DIP:DIP-5480N IntAct:P32588 MINT:MINT-499485 STRING:P32588
PaxDb:P32588 PeptideAtlas:P32588 EnsemblFungi:YNL016W GeneID:855716
KEGG:sce:YNL016W GeneTree:ENSGT00680000099967 HOGENOM:HOG000206748
KO:K13201 OMA:PAYNTTV OrthoDB:EOG4SN4XJ EvolutionaryTrace:P32588
NextBio:980072 Genevestigator:P32588 GermOnline:YNL016W
Uniprot:P32588
Length = 453
Score = 287 (106.1 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 67/219 (30%), Positives = 109/219 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXX 61
E+ LYVGNLD ++TE++L F GP+ K++ + N YAF+E+
Sbjct: 71 ETSDRVLYVGNLDKAITEDILKQYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANI 130
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE 121
+N + +K+NWA DT N +FVGDL+ ++ +TL+ AF F
Sbjct: 131 ALQTLNGKQIENNIVKINWAFQSQQSSSDDTFN---LFVGDLNVNVDDETLRNAFKDFPS 187
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
+ ++ D QT S+GY FVSF + +A+NA+ +M GQ L R +R NW+ ++ N
Sbjct: 188 YLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNNNN 247
Query: 182 E-RKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLN 219
++R+N YN ++ N + G ++N
Sbjct: 248 NYQQRRNYGNNNRGGFRQYNSNNNNNMNM---GMNMNMN 283
Score = 127 (49.8 bits), Expect = 1.8e-36, Sum P(2) = 1.8e-36
Identities = 27/87 (31%), Positives = 40/87 (45%)
Query: 196 DEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETA 255
D + + P T Y G E + +F FG I+D + + EKG F+K+ T E A
Sbjct: 330 DHIIRSAPPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPEKGCCFIKYDTHEQA 389
Query: 256 THAIESIHNTDINGHTVKCFWGKESEN 282
I ++ N G ++ WGKE N
Sbjct: 390 AVCIVALANFPFQGRNLRTGWGKERSN 416
Score = 117 (46.2 bits), Expect = 0.00049, P = 0.00049
Identities = 26/110 (23%), Positives = 56/110 (50%)
Query: 181 NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF-----GTIV- 234
N ++ +N+ K + SS ++ G ++++E + F F G ++
Sbjct: 136 NGKQIENNIVKINWAFQSQQSSSDDTFNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMW 195
Query: 235 DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNS 284
D++ +GY FV FT+++ A +A++S+ D+NG ++ W + +NN+
Sbjct: 196 DMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKRDNNN 245
>UNIPROTKB|E7ETC0 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI01012546 ProteinModelPortal:E7ETC0 SMR:E7ETC0
Ensembl:ENST00000497671 ArrayExpress:E7ETC0 Bgee:E7ETC0
Uniprot:E7ETC0
Length = 135
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 73/124 (58%), Positives = 87/124 (70%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDPYAFLEFXXXXXX 59
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E NDPY F+EF
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN R L KE+KVNWA++P +Q K+DTSNH+H+FVGDLSPEI T+ +K AFAPF
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNHFHVFVGDLSPEITTEDIKSAFAPF 120
Query: 120 GEIS 123
G+IS
Sbjct: 121 GKIS 124
Score = 115 (45.5 bits), Expect = 2.7e-06, P = 2.7e-06
Identities = 24/100 (24%), Positives = 55/100 (55%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++VG+LS ++ + + F+ G +C+++ + + + Y FV F + +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTS--NDPYCFVEFYEHRD 60
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSH 189
A A+ AMNG+ + + ++ NW+T P ++++K ++H
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATT-P---SSQKKDTSNH 96
>UNIPROTKB|Q9LEB4 [details] [associations]
symbol:RBP45 "Polyadenylate-binding protein RBP45"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0008143 EMBL:AJ292767 HSSP:O08583
ProteinModelPortal:Q9LEB4 Uniprot:Q9LEB4
Length = 409
Score = 365 (133.5 bits), Expect = 1.5e-33, P = 1.5e-33
Identities = 83/283 (29%), Positives = 143/283 (50%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPG-NDPYAFLEFXXXXXXXXXXXX 65
+L++G+L + E L F G + KVIR + G ++ Y FLEF
Sbjct: 85 SLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGFLEFRSHAAAETILQT 144
Query: 66 MNKRVF--LEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFGEI 122
N + +E+ ++NWAS + + D++ H IFVGDL+ ++ L+E F + + +
Sbjct: 145 YNGTLMPNVEQNFRMNWASLGAGERRDDSAEHT-IFVGDLAADVTDYILQETFKSVYSSV 203
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
++V D T +SKGY FV F ++E A+T MNG +R +R + K P T +
Sbjct: 204 RGAKVVTDRITGRSKGYGFVKFADESEQLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQ 263
Query: 183 RKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
+ + T +S P N T++ GG + EE + +VFSP+G +V +++ K
Sbjct: 264 KATYQNPQAT------QGESDPNNTTIFVGGLDPTVAEEHLRQVFSPYGELVHVKIVAGK 317
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285
FV+F T+ +A A+ S++ T + G +++ WG+ + T
Sbjct: 318 RCGFVQFGTRASAEQALSSLNGTQLGGQSIRLSWGRSPSSKQT 360
Score = 195 (73.7 bits), Expect = 5.6e-13, P = 5.6e-13
Identities = 58/199 (29%), Positives = 97/199 (48%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQI-GPVKGCKVI--REPGNDP-YAFLEFXXXXX 58
D+S T++VG+L VT+ +L F + V+G KV+ R G Y F++F
Sbjct: 171 DDSAEHTIFVGDLAADVTDYILQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESE 230
Query: 59 XXXXXXXMNKRVFLEKEMKVNWASS--PGNQPKQDT------------SNHYHIFVGDLS 104
MN + + M++ A++ P P++ T N+ IFVG L
Sbjct: 231 QLRAMTEMNGVLCSTRPMRIGPAANKKPVGTPQKATYQNPQATQGESDPNNTTIFVGGLD 290
Query: 105 PEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS 164
P + + L++ F+P+GE+ + +IV K FV F +A AE A++++NG LG
Sbjct: 291 PTVAEEHLRQVFSPYGELVHVKIVA------GKRCGFVQFGTRASAEQALSSLNGTQLGG 344
Query: 165 RSIRTNWSTRKPPAMTNER 183
+SIR +W R P + ++
Sbjct: 345 QSIRLSWG-RSPSSKQTDQ 362
Score = 136 (52.9 bits), Expect = 3.1e-06, P = 3.1e-06
Identities = 54/223 (24%), Positives = 96/223 (43%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
++P P + + +++GDL ++ L F GE+ + +++R+ QT +S+GY F
Sbjct: 70 TNPNPSPTGNPNEVRSLWIGDLQYWMDENYLSTCFYHTGELVSAKVIRNKQTGQSEGYGF 129
Query: 142 VSFVKKAEAENAITAMNGQWLGS--RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVY 199
+ F A AE + NG + + ++ R NW++ ER R +S TI ++
Sbjct: 130 LEFRSHAAAETILQTYNGTLMPNVEQNFRMNWASLG----AGER-RDDSAEHTIFVGDL- 183
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGT-IVDIRVF-KEKGYAFVKFTTKETATH 257
+ T Y L E S S G +V R+ + KGY FVKF +
Sbjct: 184 ----AADVTDYI------LQETFKSVYSSVRGAKVVTDRITGRSKGYGFVKFADESEQLR 233
Query: 258 AIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNST 300
A+ ++ + ++ G + N + P T P +T
Sbjct: 234 AMTEMNGVLCSTRPMRI--GPAA-NKKPVGTPQKATYQNPQAT 273
>TAIR|locus:2116322 [details] [associations]
symbol:ATRBP45C species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 EMBL:CP002687 EMBL:AL161566 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 EMBL:AL035440 HSSP:P19339
GO:GO:0008143 OMA:YANRACA HOGENOM:HOG000186228 EMBL:AF370339
EMBL:AY054487 EMBL:AY062999 EMBL:AY093292 IPI:IPI00516600
PIR:T04823 RefSeq:NP_567764.1 UniGene:At.47594 UniGene:At.67098
UniGene:At.67775 ProteinModelPortal:Q93W34 SMR:Q93W34 IntAct:Q93W34
STRING:Q93W34 PRIDE:Q93W34 EnsemblPlants:AT4G27000.1 GeneID:828808
KEGG:ath:AT4G27000 TAIR:At4g27000 ProtClustDB:CLSN2917618
Genevestigator:Q93W34 Uniprot:Q93W34
Length = 415
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 82/287 (28%), Positives = 135/287 (47%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFXXXXXXXXXXXX 65
+L++G+L + E L +F G KVIR N + Y F+EF
Sbjct: 81 SLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEFVNHATAERNLQT 140
Query: 66 MNKRVF--LEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFGEI 122
N E+ ++NWA + +Q + +FVGDL+P++ L E F A + +
Sbjct: 141 YNGAPMPSSEQAFRLNWAQLGAGERRQAEGPEHTVFVGDLAPDVTDHMLTETFKAVYSSV 200
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
++V D T +SKGY FV F ++E A+T MNGQ+ SR +RT + K P
Sbjct: 201 KGAKVVNDRTTGRSKGYGFVRFADESEQIRAMTEMNGQYCSSRPMRTGPAANKKPLTMQP 260
Query: 183 RKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
QN+ + +S PTN T++ G + + E+ + VF FG +V +++ K
Sbjct: 261 ASYQNTQGNS-------GESDPTNTTIFVGAVDQSVTEDDLKSVFGQFGELVHVKIPAGK 313
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQP 289
FV++ + A A+ ++ T + G +++ WG+ N T QP
Sbjct: 314 RCGFVQYANRACAEQALSVLNGTQLGGQSIRLSWGRSPSNKQT--QP 358
Score = 132 (51.5 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 51/219 (23%), Positives = 92/219 (42%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
G+Q +++GDL P ++ L F GE + +++R+ Q S+GY F+ F
Sbjct: 69 GSQNPGSAGEIRSLWIGDLQPWMDENYLMNVFGLTGEATAAKVIRNKQNGYSEGYGFIEF 128
Query: 145 VKKAEAENAITAMNGQWLGS--RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQS 202
V A AE + NG + S ++ R NW+ ER++ T+ ++
Sbjct: 129 VNHATAERNLQTYNGAPMPSSEQAFRLNWAQLG----AGERRQAEGPEHTVFVGDL---- 180
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGT-IVDIRVF-KEKGYAFVKFTTKETATHAIE 260
+P + T + L E + S G +V+ R + KGY FV+F + A+
Sbjct: 181 AP-DVTDHM------LTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQIRAMT 233
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNS 299
++ + ++ G + QP++ Q NS
Sbjct: 234 EMNGQYCSSRPMRT--GPAANKKPLTMQPASYQNTQGNS 270
Score = 126 (49.4 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 51/187 (27%), Positives = 78/187 (41%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQI-GPVKGCKVI--REPGNDP-YAFLEFXXXXXX 59
E T++VG+L VT+ +L F + VKG KV+ R G Y F+ F
Sbjct: 169 EGPEHTVFVGDLAPDVTDHMLTETFKAVYSSVKGAKVVNDRTTGRSKGYGFVRFADESEQ 228
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTS-NHYHIFVGDLSPEIET-------QT 111
MN + + M+ A++ Q S + G+ P T Q+
Sbjct: 229 IRAMTEMNGQYCSSRPMRTGPAANKKPLTMQPASYQNTQGNSGESDPTNTTIFVGAVDQS 288
Query: 112 LKE--AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169
+ E + FG+ V+ P K FV + +A AE A++ +NG LG +SIR
Sbjct: 289 VTEDDLKSVFGQFGELVHVKIPA---GKRCGFVQYANRACAEQALSVLNGTQLGGQSIRL 345
Query: 170 NWSTRKP 176
+W R P
Sbjct: 346 SWG-RSP 351
>TAIR|locus:2027372 [details] [associations]
symbol:RBP45B species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS;IDA] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010193 "response to ozone" evidence=IEP] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010193 EMBL:AC007296
HSSP:P19339 eggNOG:COG0724 GO:GO:0008143 HOGENOM:HOG000186228
EMBL:AY093201 EMBL:BT008494 EMBL:AK318868 EMBL:AY086969
IPI:IPI00523017 IPI:IPI00536746 PIR:H86249 RefSeq:NP_172630.1
RefSeq:NP_849641.1 UniGene:At.19842 ProteinModelPortal:Q9SAB3
SMR:Q9SAB3 IntAct:Q9SAB3 PRIDE:Q9SAB3 EnsemblPlants:AT1G11650.2
GeneID:837708 KEGG:ath:AT1G11650 TAIR:At1g11650 InParanoid:Q9SAB3
OMA:PQAHYGQ PhylomeDB:Q9SAB3 ProtClustDB:CLSN2682179
Genevestigator:Q9SAB3 Uniprot:Q9SAB3
Length = 405
Score = 343 (125.8 bits), Expect = 3.3e-31, P = 3.3e-31
Identities = 90/290 (31%), Positives = 142/290 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGN-DPYAFLEFXXXXXXXXXXXX 65
TL++G+L + E L F+ G + KVIR + G + Y F+EF
Sbjct: 63 TLWIGDLQYWMDENFLYGCFAHTGEMVSAKVIRNKQTGQVEGYGFIEFASHAAAERVLQT 122
Query: 66 MNKRV---FLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFG 120
N F ++ ++NWAS S G+ K+D S Y IFVGDL+ ++ L E F A +
Sbjct: 123 FNNAPIPSFPDQLFRLNWASLSSGD--KRDDSPDYTIFVGDLAADVTDYILLETFRASYP 180
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT 180
+ ++V D T ++KGY FV F ++E A+T MNG +R +R + K +T
Sbjct: 181 SVKGAKVVIDRVTGRTKGYGFVRFSDESEQIRAMTEMNGVPCSTRPMRIGPAASKK-GVT 239
Query: 181 NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK 240
+R S +T D + P N TV+ GG + ++ + VFS +G IV +++
Sbjct: 240 GQRDSYQSSAAGVTTD-----NDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIVHVKIPA 294
Query: 241 EKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPS 290
K FV+F+ K A A+ ++ + G TV+ WG+ S +N PS
Sbjct: 295 GKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRLSWGR-SPSNKQSGDPS 343
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 59/225 (26%), Positives = 90/225 (40%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGP-VKGCKVI--REPGNDP-YAFLEFXXXXX 58
D+S T++VG+L VT+ +L F P VKG KV+ R G Y F+ F
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 59 XXXXXXXMNKRVFLEKEMKVNWASSP-GNQPKQDTSNHYHIFVG-DLSPEIETQTLK--E 114
MN + M++ A+S G ++D+ V D P T + +
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRDSYQSSAAGVTTDNDPNNTTVFVGGLD 269
Query: 115 AFAPFGEISNC-----RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169
A + N IV + K FV F +K+ AE A+ +NG LG ++R
Sbjct: 270 ASVTDDHLKNVFSQYGEIVH-VKIPAGKRCGFVQFSEKSCAEEALRMLNGVQLGGTTVRL 328
Query: 170 NWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGF 214
+W R P + Q + E Y + P + Y GG+
Sbjct: 329 SWG-RSPSNKQSGDPSQFYYGGYGQGQEQYGYTMPQDPNAYYGGY 372
>TAIR|locus:2160210 [details] [associations]
symbol:RBP45A "RNA-binding protein 45A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009220 "pyrimidine
ribonucleotide biosynthetic process" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005829 GO:GO:0005634 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 eggNOG:COG0724 EMBL:AB005232 GO:GO:0008143
HSSP:Q61474 HOGENOM:HOG000186228 EMBL:AF324983 EMBL:BT029545
IPI:IPI00522054 RefSeq:NP_568815.1 UniGene:At.19141
ProteinModelPortal:Q9FPJ8 SMR:Q9FPJ8 IntAct:Q9FPJ8 STRING:Q9FPJ8
PRIDE:Q9FPJ8 EnsemblPlants:AT5G54900.1 GeneID:835581
KEGG:ath:AT5G54900 TAIR:At5g54900 InParanoid:Q9FPJ8 OMA:EARTLWI
PhylomeDB:Q9FPJ8 ProtClustDB:CLSN2917762 Genevestigator:Q9FPJ8
Uniprot:Q9FPJ8
Length = 387
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 79/291 (27%), Positives = 137/291 (47%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--G-NDPYAFLEFXXXXXXXX 61
S +L++G+L + E + ++F+Q G KVIR G ++ Y F+EF
Sbjct: 57 SDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEFVSHSVAER 116
Query: 62 XXXXMNKRVF--LEKEMKVNWASSPGNQPKQDTSNHYH-IFVGDLSPEIETQTLKEAFAP 118
N E+ ++NWA + + + T H IFVGDL+PE+ L + F
Sbjct: 117 VLQTYNGAPMPSTEQTFRLNWAQAGAGEKRFQTEGPDHTIFVGDLAPEVTDYMLSDTFKN 176
Query: 119 -FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
+G + ++V D T +SKGY FV F + E A+T MNGQ+ +R +R + K
Sbjct: 177 VYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQMRAMTEMNGQYCSTRPMRIGPAANKNA 236
Query: 178 AMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237
QN+ + P N T++ GG ++ ++ + +F FG ++ ++
Sbjct: 237 LPMQPAMYQNTQGANA------GDNDPNNTTIFVGGLDANVTDDELKSIFGQFGELLHVK 290
Query: 238 VFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
+ K FV++ K +A HA+ ++ T + G +++ WG+ S AQ
Sbjct: 291 IPPGKRCGFVQYANKASAEHALSVLNGTQLGGQSIRLSWGRSPNKQSDQAQ 341
Score = 155 (59.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 55/194 (28%), Positives = 82/194 (42%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQI-GPVKGCKVI--REPGNDP-YAFLEFXXXXXX 59
E T++VG+L VT+ +L F + G VKG KV+ R G Y F+ F
Sbjct: 150 EGPDHTIFVGDLAPEVTDYMLSDTFKNVYGSVKGAKVVLDRTTGRSKGYGFVRFADENEQ 209
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDT--SNHYHIFVGDLSPEIET-------- 109
MN + + M++ A++ P Q N GD P T
Sbjct: 210 MRAMTEMNGQYCSTRPMRIGPAANKNALPMQPAMYQNTQGANAGDNDPNNTTIFVGGLDA 269
Query: 110 -QTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIR 168
T E + FG+ V+ P K FV + KA AE+A++ +NG LG +SIR
Sbjct: 270 NVTDDELKSIFGQFGELLHVKIPP---GKRCGFVQYANKASAEHALSVLNGTQLGGQSIR 326
Query: 169 TNWSTRKPPAMTNE 182
+W R P +++
Sbjct: 327 LSWG-RSPNKQSDQ 339
Score = 133 (51.9 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 47/208 (22%), Positives = 89/208 (42%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
G+Q S+ +++GDL ++ + FA GE ++ +++R+ T +S+GY F+ F
Sbjct: 49 GSQNPGSASDVKSLWIGDLQQWMDENYIMSVFAQSGEATSAKVIRNKLTGQSEGYGFIEF 108
Query: 145 VKKAEAENAITAMNGQWLGS--RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQS 202
V + AE + NG + S ++ R NW+ A E++ Q F
Sbjct: 109 VSHSVAERVLQTYNGAPMPSTEQTFRLNWAQ----AGAGEKRFQTEGPDHTIF---VGDL 161
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESI 262
+P T Y D + + V ++D + KGY FV+F + A+ +
Sbjct: 162 AP-EVTDY---MLSDTFKNVYGSVKGA-KVVLDRTTGRSKGYGFVRFADENEQMRAMTEM 216
Query: 263 HNTDINGHTVKCFWGKESENNSTLAQPS 290
+ + ++ G + N+ QP+
Sbjct: 217 NGQYCSTRPMRI--GPAANKNALPMQPA 242
>TAIR|locus:2094098 [details] [associations]
symbol:RBP47B "RNA-binding protein 47B" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0042991 "transcription
factor import into nucleus" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AP000419 GO:GO:0010494 eggNOG:COG0724 HSSP:P09651
GO:GO:0008143 HOGENOM:HOG000186228 EMBL:AK226472 EMBL:BT026489
EMBL:AY084821 IPI:IPI00522174 IPI:IPI00785888 RefSeq:NP_188544.1
UniGene:At.8226 ProteinModelPortal:Q0WW84 SMR:Q0WW84 STRING:Q0WW84
PaxDb:Q0WW84 PRIDE:Q0WW84 EnsemblPlants:AT3G19130.1 GeneID:821447
KEGG:ath:AT3G19130 TAIR:At3g19130 InParanoid:Q0WW84 OMA:RAVENGP
PhylomeDB:Q0WW84 ProtClustDB:CLSN2913615 Genevestigator:Q0WW84
Uniprot:Q0WW84
Length = 435
Score = 334 (122.6 bits), Expect = 3.0e-30, P = 3.0e-30
Identities = 87/285 (30%), Positives = 143/285 (50%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXX 65
TL+VG+L + E L + FS G V KVIR ++ Y F+EF
Sbjct: 109 TLWVGDLLHWMDETYLHSCFSHTGEVSSVKVIRNKLTSQSEGYGFVEFLSRAAAEEVLQN 168
Query: 66 MNKRVF--LEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-FGE 121
+ V ++ ++NWAS S G + + +FVGDLSP++ L E F+ +
Sbjct: 169 YSGSVMPNSDQPFRINWASFSTGEKRAVENGPDLSVFVGDLSPDVTDVLLHETFSDRYPS 228
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
+ + ++V D T +SKGY FV F + E A+T MNG + +R +R +T K A+ N
Sbjct: 229 VKSAKVVIDSNTGRSKGYGFVRFGDENERSRALTEMNGAYCSNRQMRVGIATPKR-AIAN 287
Query: 182 ERKRQNS-------HTKTITFDE-VYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTI 233
+++ + H + + TN T++ GG D+ +E + + FS FG +
Sbjct: 288 QQQHSSQAVILAGGHGSNGSMGYGSQSDGESTNATIFVGGIDPDVIDEDLRQPFSQFGEV 347
Query: 234 VDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
V +++ KG FV+F +++A AIES++ T I +TV+ WG+
Sbjct: 348 VSVKIPVGKGCGFVQFADRKSAEDAIESLNGTVIGKNTVRLSWGR 392
>TAIR|locus:2012211 [details] [associations]
symbol:RBP47A "RNA-binding protein 47A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005829 "cytosol"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC011807 eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103
IPI:IPI00529085 IPI:IPI01019950 PIR:F96532 RefSeq:NP_175383.1
UniGene:At.23595 ProteinModelPortal:F4I3B3 SMR:F4I3B3 IntAct:F4I3B3
PRIDE:F4I3B3 EnsemblPlants:AT1G49600.1 GeneID:841384
KEGG:ath:AT1G49600 TAIR:At1g49600 OMA:KLLAIHQ Uniprot:F4I3B3
Length = 445
Score = 332 (121.9 bits), Expect = 4.9e-30, P = 4.9e-30
Identities = 88/281 (31%), Positives = 135/281 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFXXXXXXXXXXXX 65
TL+VG+L + E L FS V KVIR ++ Y F+EF
Sbjct: 120 TLWVGDLLHWMDETYLHTCFSHTNEVSSVKVIRNKQTCQSEGYGFVEFLSRSAAEEALQS 179
Query: 66 MNKRVF--LEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-FGE 121
+ E+ ++NWAS S G + + IFVGDL+P++ L E FA +
Sbjct: 180 FSGVTMPNAEQPFRLNWASFSTGEKRASENGPDLSIFVGDLAPDVSDAVLLETFAGRYPS 239
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
+ ++V D T +SKGY FV F + E A+T MNG + SR +R +T K A
Sbjct: 240 VKGAKVVIDSNTGRSKGYGFVRFGDENERSRAMTEMNGAFCSSRQMRVGIATPKRAAAYG 299
Query: 182 ERKRQNSHTKTITFDEVYNQS----SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237
++ S T+ N S N T++ GG D+ EE + + FS FG +V ++
Sbjct: 300 QQN--GSQALTLAGGHGGNGSMSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVK 357
Query: 238 VFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
+ KG FV+F +++A AI +++ T I +TV+ WG+
Sbjct: 358 IPVGKGCGFVQFANRQSAEEAIGNLNGTVIGKNTVRLSWGR 398
Score = 120 (47.3 bits), Expect = 0.00022, P = 0.00022
Identities = 30/98 (30%), Positives = 46/98 (46%)
Query: 1 MCD-ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXX 59
M D ES +T++VG LD VTEE L FS G V K+ P F++F
Sbjct: 319 MSDGESNNSTIFVGGLDADVTEEDLMQPFSDFGEVVSVKI---PVGKGCGFVQFANRQSA 375
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYH 97
+N V + ++++W SP Q + D+ N ++
Sbjct: 376 EEAIGNLNGTVIGKNTVRLSWGRSPNKQWRSDSGNQWN 413
>UNIPROTKB|Q9LEB3 [details] [associations]
symbol:RBP47 "Polyadenylate-binding protein RBP47"
species:4092 "Nicotiana plumbaginifolia" [GO:0005634 "nucleus"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0010494 "cytoplasmic stress granule" evidence=IDA] [GO:0034605
"cellular response to heat" evidence=IDA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0034605 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0010494 GO:GO:0008143 HSSP:P33240
EMBL:AJ292768 ProteinModelPortal:Q9LEB3 Uniprot:Q9LEB3
Length = 428
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 80/286 (27%), Positives = 140/286 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPG-NDPYAFLEFXXXXXXXXXXXX 65
T+++G+L + E L + FSQ G V K+IR + G ++ Y F+EF
Sbjct: 85 TIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRNKQTGQSERYGFVEFNTHAAAEKVLQS 144
Query: 66 MNKRVF--LEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-FGEI 122
N + E+ ++NWA + + +T + + IFVGDL+ ++ L++ FA + +
Sbjct: 145 YNGTMMPNTEQPFRLNWAGFSTGEKRAETGSDFSIFVGDLASDVTDTMLRDTFASRYPSL 204
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNE 182
++V D T SKGY FV F ++E A+T MNG + SR++R +T K P+ +
Sbjct: 205 KGAKVVVDANTGHSKGYGFVRFGDESERSRAMTEMNGVYCSSRAMRIGVATPKKPSAHEQ 264
Query: 183 RKRQN---SHTKTITFDEVYNQSSP---TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI 236
Q S + S +N T++ GG ++ +E + + F+ FG +V +
Sbjct: 265 YSSQAVILSGGYASNGAATHGSQSDGDSSNTTIFVGGLDSEVTDEELRQSFNQFGEVVSV 324
Query: 237 RVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282
++ KG FV+F+ + +A AI+ + I V+ WG+ N
Sbjct: 325 KIPAGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQAVRLSWGRSPAN 370
Score = 135 (52.6 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 48/201 (23%), Positives = 90/201 (44%)
Query: 71 FLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD 130
+ + + + SP Q + + ++ I++GDL ++ L F+ GE+ + +I+R+
Sbjct: 60 YQQHQQQQKMQQSP-TQIQSSSEDNKTIWIGDLQQWMDESYLHSCFSQAGEVISVKIIRN 118
Query: 131 PQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGS--RSIRTNWSTRKPPAMTNERKRQNS 188
QT +S+ Y FV F A AE + + NG + + + R NW+ T E++ +
Sbjct: 119 KQTGQSERYGFVEFNTHAAAEKVLQSYNGTMMPNTEQPFRLNWAGFS----TGEKRAETG 174
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVK 248
+I ++ +S T+ F +KV +VD KGY FV+
Sbjct: 175 SDFSIFVGDL---ASDVTDTMLRDTFASRYPSLKGAKV------VVDANTGHSKGYGFVR 225
Query: 249 FTTKETATHAIESIHNTDING 269
F + + A+ T++NG
Sbjct: 226 FGDESERSRAM-----TEMNG 241
>POMBASE|SPBC23E6.01c [details] [associations]
symbol:SPBC23E6.01c "mRNA processing factor
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0000932
"cytoplasmic mRNA processing body" evidence=ISO] [GO:0003729 "mRNA
binding" evidence=ISO] [GO:0005829 "cytosol" evidence=IDA]
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=ISO]
[GO:0071004 "U2-type prespliceosome" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPBC23E6.01c GO:GO:0005829 GO:GO:0000166
EMBL:CU329671 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000932
eggNOG:COG0724 GO:GO:0071004 OrthoDB:EOG44BFB8 GO:GO:0070935
HOGENOM:HOG000186228 RefSeq:NP_596601.2 ProteinModelPortal:O60176
STRING:O60176 EnsemblFungi:SPBC23E6.01c.1 GeneID:2540551
KEGG:spo:SPBC23E6.01c OMA:HEASSAM NextBio:20801677 Uniprot:O60176
Length = 473
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 93/313 (29%), Positives = 150/313 (47%)
Query: 3 DES--QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXX 57
DE+ Q TTL++G L+ VTE + +++ +G K+IR G N Y F+EF
Sbjct: 86 DENVYQKTTLWMGELEPWVTEAFIQQVWNTLGKAVKVKLIRNRYTGMNAGYCFVEFASPH 145
Query: 58 XXXXXXXXMNKRVFLEKEM-KVNWASSPGNQPKQ-DTSNHYHIFVGDLSPEIETQTLKEA 115
NK + + K+NWAS G + K ++ Y IFVGDLSP + +
Sbjct: 146 EASSAMSMNNKPIPGTNHLFKLNWASGGGLREKSISKASEYSIFVGDLSPNVNEFDVYSL 205
Query: 116 FAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174
FA + + +I+ DPQT S+GY FV F + + ++A+ M GQ G R IR +T
Sbjct: 206 FASRYNSCKSAKIMTDPQTNVSRGYGFVRFTDENDQKSALAEMQGQICGDRPIRVGLAT- 264
Query: 175 KPPAMTNERKRQNSHTKTITFDEVYNQSSPT-------NCTVYCGGFGKDLNEELVSKVF 227
P + + N ++ Y+ + P N TV+ GG K ++EE + +F
Sbjct: 265 -PKSKAHVFSPVNVVPVSMPPVGFYSAAQPVPQFADTANSTVFVGGLSKFVSEEELKYLF 323
Query: 228 SPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLA 287
FG IV +++ KG FV+F +++A AI + + ++ WG+ N + +A
Sbjct: 324 QNFGEIVYVKIPPGKGCGFVQFVNRQSAEIAINQLQGYPLGNSRIRLSWGR---NQNPIA 380
Query: 288 QPSAPTTPQPNST 300
P+ Q + T
Sbjct: 381 APALNYQSQVSQT 393
>UNIPROTKB|E5RGV5 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974016
ProteinModelPortal:E5RGV5 SMR:E5RGV5 Ensembl:ENST00000474809
ArrayExpress:E5RGV5 Bgee:E5RGV5 Uniprot:E5RGV5
Length = 144
Score = 326 (119.8 bits), Expect = 2.1e-29, P = 2.1e-29
Identities = 68/133 (51%), Positives = 85/133 (63%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSN-----------HYHIFVGDLSPEIETQ 110
MN R + KE+KVNWA++P +Q K+DTS+ H+H+FVGDLSPEI T+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSSSTVVSTQRSQDHFHVFVGDLSPEITTE 120
Query: 111 TLKEAFAPFGEIS 123
+K AFAPFG IS
Sbjct: 121 DIKAAFAPFGRIS 133
Score = 155 (59.6 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 36/136 (26%), Positives = 69/136 (50%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG+LS ++ + + F+ G NC+++ D T + Y FV F + A A+ AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
NG+ + + ++ NW+T T +++++ + T+ V Q S + V+ G +
Sbjct: 67 NGRKIMGKEVKVNWAT------TPSSQKKDTSSSTV----VSTQRSQDHFHVFVGDLSPE 116
Query: 218 LNEELVSKVFSPFGTI 233
+ E + F+PFG I
Sbjct: 117 ITTEDIKAAFAPFGRI 132
>TAIR|locus:2150215 [details] [associations]
symbol:AT5G19350 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0010048 "vernalization response" evidence=RCA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0034605 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
EMBL:AF296837 GO:GO:0010494 GO:GO:0008143 HSSP:Q14103 EMBL:AY074319
EMBL:AY114004 IPI:IPI00526390 IPI:IPI00846741 RefSeq:NP_001078604.1
RefSeq:NP_197436.1 UniGene:At.31302 ProteinModelPortal:Q8VXZ9
SMR:Q8VXZ9 PRIDE:Q8VXZ9 EnsemblPlants:AT5G19350.1 GeneID:832055
KEGG:ath:AT5G19350 TAIR:At5g19350 HOGENOM:HOG000186228
InParanoid:Q8VXZ9 OMA:NGTQMPG PhylomeDB:Q8VXZ9
ProtClustDB:CLSN2693583 Genevestigator:Q8VXZ9 Uniprot:Q8VXZ9
Length = 425
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 83/295 (28%), Positives = 141/295 (47%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GN-DPYAFLEFXXXXXXXXXXXX 65
TL++G+L V E L + FSQ G + KVIR G + Y F+EF
Sbjct: 25 TLWIGDLQYWVDENYLTSCFSQTGELVSVKVIRNKITGQPEGYGFIEFISHAAAERTLQT 84
Query: 66 MNKRVFLEKEM--KVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFGEI 122
N E+ ++NWAS G+ K D + IFVGDL+P++ L+E F + +
Sbjct: 85 YNGTQMPGTELTFRLNWASF-GSGQKVDAGPDHSIFVGDLAPDVTDYLLQETFRVHYSSV 143
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST-RKPPAMTN 181
++V DP T +SKGY FV F +++E A+ MNG + +R +R + +T +K +
Sbjct: 144 RGAKVVTDPSTGRSKGYGFVKFAEESERNRAMAEMNGLYCSTRPMRISAATPKKNVGVQQ 203
Query: 182 ERKRQNSHTKTITFD-----EVY---NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTI 233
+ + + T+ + Y +S T T+ +++ EE + K FS G +
Sbjct: 204 QYVTKAVYPVTVPSAVAAPVQAYVAPPESDVTCTTISVANLDQNVTEEELKKAFSQLGEV 263
Query: 234 VDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
+ +++ KGY +V+F T+ +A A++ + I V+ W K + + Q
Sbjct: 264 IYVKIPATKGYGYVQFKTRPSAEEAVQRMQGQVIGQQAVRISWSKNPGQDGWVTQ 318
>TAIR|locus:2015398 [details] [associations]
symbol:RBP47C' "RNA-binding protein 47C'" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494
EMBL:AC007519 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
EMBL:AK227406 EMBL:BT030029 IPI:IPI00530631 PIR:C96515
RefSeq:NP_175181.1 UniGene:At.22563 UniGene:At.64064
ProteinModelPortal:Q9SX80 SMR:Q9SX80 PRIDE:Q9SX80
EnsemblPlants:AT1G47500.1 GeneID:841159 KEGG:ath:AT1G47500
TAIR:At1g47500 InParanoid:Q9SX80 OMA:FANDIRP PhylomeDB:Q9SX80
ProtClustDB:CLSN2681931 Genevestigator:Q9SX80 Uniprot:Q9SX80
Length = 434
Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
Identities = 84/283 (29%), Positives = 136/283 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP--VKGCKVIREPGN---DPYAFLEFXXXXXXXXXX 63
T++VG+L + E L + F+ + KVIR N + Y F+EF
Sbjct: 104 TIWVGDLQNWMDEAYLNSAFTSAEEREIVSLKVIRNKHNGSSEGYGFVEFESHDVADKVL 163
Query: 64 XXMNKRVF--LEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-F 119
N ++ ++NWAS S G + ++ IFVGDL+P++ L E F+ +
Sbjct: 164 QEFNGAPMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLAPDVSDALLHETFSEKY 223
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
+ ++V D T +SKGY FV F + E A+T MNG SR++R +T P
Sbjct: 224 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT---PRK 280
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
TN ++Q + + F ++ N T++ GG + +E + + FS FG IV +++
Sbjct: 281 TNGYQQQGGYMPSGAFTR--SEGDTINTTIFVGGLDSSVTDEDLKQPFSEFGEIVSVKIP 338
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282
KG FV+F + A A+E ++ T I TV+ WG+ N
Sbjct: 339 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPAN 381
>TAIR|locus:2015403 [details] [associations]
symbol:RBP47C "RNA-binding protein 47C" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISM] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0034605 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0010494 EMBL:AC007519
eggNOG:COG0724 GO:GO:0008143 HSSP:Q14103 HOGENOM:HOG000186228
UniGene:At.22563 ProtClustDB:CLSN2681931 EMBL:AF344325
EMBL:AY035180 EMBL:AY062960 EMBL:BX813781 IPI:IPI00519360
IPI:IPI00543304 PIR:B96515 RefSeq:NP_175180.1 RefSeq:NP_973984.1
ProteinModelPortal:Q9SX79 SMR:Q9SX79 PRIDE:Q9SX79
EnsemblPlants:AT1G47490.1 GeneID:841157 KEGG:ath:AT1G47490
TAIR:At1g47490 InParanoid:Q9SX79 OMA:IWVGDLH PhylomeDB:Q9SX79
Genevestigator:Q9SX79 Uniprot:Q9SX79
Length = 432
Score = 314 (115.6 bits), Expect = 3.9e-28, P = 3.9e-28
Identities = 84/283 (29%), Positives = 134/283 (47%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP--VKGCKVIREPGN---DPYAFLEFXXXXXXXXXX 63
T++VG+L + E L + F+ + KVIR N + Y F+EF
Sbjct: 102 TIWVGDLHHWMDEAYLNSSFASGDEREIVSVKVIRNKNNGLSEGYGFVEFESHDVADKVL 161
Query: 64 XXMNKRVF--LEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-F 119
N ++ ++NWAS S G + ++ IFVGDLSP++ L E F+ +
Sbjct: 162 REFNGTTMPNTDQPFRLNWASFSTGEKRLENNGPDLSIFVGDLSPDVSDNLLHETFSEKY 221
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
+ ++V D T +SKGY FV F + E A+T MNG SR++R +T P
Sbjct: 222 PSVKAAKVVLDANTGRSKGYGFVRFGDENERTKAMTEMNGVKCSSRAMRIGPAT---PRK 278
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
TN ++Q + T + N T++ GG + +E + + F+ FG IV +++
Sbjct: 279 TNGYQQQGGYMPNGTLTRP--EGDIMNTTIFVGGLDSSVTDEDLKQPFNEFGEIVSVKIP 336
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESEN 282
KG FV+F + A A+E ++ T I TV+ WG+ N
Sbjct: 337 VGKGCGFVQFVNRPNAEEALEKLNGTVIGKQTVRLSWGRNPAN 379
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 214 (80.4 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 55/173 (31%), Positives = 86/173 (49%)
Query: 9 TLYVGNLDVSVTEELLCALFSQI-GPVKGCKVIRE--PGNDPYAFLEFXXXXXXXXXXXX 65
TL++G L+ + E + ++S + G KVIR+ GN Y F+EF
Sbjct: 48 TLWMGELEPWMDENFIKQIWSTVCGETVNVKVIRDRQSGNAGYCFVEFPSSEAATKALGL 107
Query: 66 MNKRV-FLEKEMKVNWASSPGNQPKQDTSN-HYHIFVGDLSPEIETQTLKEAF-APFGEI 122
V ++ K+NWAS G ++D Y IFVGDL PE+ L F A F
Sbjct: 108 NGSPVPNSQRVFKLNWASGGGLVDRRDERGPEYSIFVGDLGPEVNEFVLVSLFQARFPSC 167
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
+ +I+ D T +S+GY FV F +++ + A+ M G + G+R +R + +T K
Sbjct: 168 KSAKIMTDAMTGQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTATPK 220
Score = 146 (56.5 bits), Expect = 8.5e-27, Sum P(2) = 8.5e-27
Identities = 33/100 (33%), Positives = 49/100 (49%)
Query: 200 NQ-SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHA 258
NQ + P N TV+ GG + E+ + F FG I +++ KG FV+F + A A
Sbjct: 276 NQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGDITYVKIPPGKGCGFVQFVHRHAAEMA 335
Query: 259 IESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPN 298
I + I V+ WG+ S+NNS + P P P P+
Sbjct: 336 INQMQGYPIGNSRVRLSWGR-SQNNSGVGTPYRPAPPPPH 374
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 273 (101.2 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 76/271 (28%), Positives = 132/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 3 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 62
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ ++LKE F+ FG+ +
Sbjct: 63 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 122
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RDP KSKG+ FVS+ K +A A+ MNG+ + + I + +K E KR
Sbjct: 123 KVMRDPNG-KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA-ELKR 180
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 181 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 234
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 235 KGFGFVCFSSPEEATKAV-----TEMNGRIV 260
Score = 192 (72.6 bits), Expect = 8.9e-13, Sum P(2) = 8.9e-13
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+P + F+ +
Sbjct: 93 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 152
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 153 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 212
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 213 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 270
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 271 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 305
Score = 165 (63.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 50/178 (28%), Positives = 84/178 (47%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++F+ +L I+ + L + F+ FG I +C++V D SKGYAFV F + A+ AI
Sbjct: 2 NVFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYAFVHFETQEAADKAIEK 59
Query: 157 MNGQWLGSRSIRTN-WSTRKP-PAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGF 214
MNG L R + + +RK A + ++ ++ F E + S F
Sbjct: 60 MNGMLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELF---SQF 116
Query: 215 GKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
GK L+ +++ P G K KG+ FV + E A A+E ++ +I+G +
Sbjct: 117 GKTLSVKVMR---DPNG--------KSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 163
Score = 44 (20.5 bits), Expect = 2.0e-25, Sum P(2) = 2.0e-25
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 358 GIPGA-QPTAQQMAVAQAQPSMMAAY 382
G+P A Q A + AVA A P +A Y
Sbjct: 416 GVPTAVQNLAPRAAVAAAAPRAVAPY 441
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 273 (101.2 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 76/271 (28%), Positives = 132/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ ++LKE F+ FG+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RDP KSKG+ FVS+ K +A A+ MNG+ + + I + +K E KR
Sbjct: 221 KVMRDPSG-KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 279 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 245 (91.3 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
Identities = 78/274 (28%), Positives = 124/274 (45%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GPV +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGYAFV F + A+ AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+ ++ ++ F E + S FGK L+ +++ P G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELF---SQFGKTLSVKVMR---DPSG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV + E A A+E ++ +I+G +
Sbjct: 229 -KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 192 (72.6 bits), Expect = 1.1e-12, Sum P(2) = 1.1e-12
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+P + F+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 311 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
Score = 45 (20.9 bits), Expect = 3.3e-25, Sum P(2) = 3.3e-25
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 358 GIPGA-QPTAQQMAVAQAQPSMMAAY 382
G+P A Q A + AVA A P +A Y
Sbjct: 485 GVPTAVQTLAPRAAVAAAAPRAVAPY 510
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 273 (101.2 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 76/271 (28%), Positives = 132/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ ++LKE F+ FG+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RDP KSKG+ FVS+ K +A A+ MNG+ + + I + +K E KR
Sbjct: 221 KVMRDPNG-KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 279 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 243 (90.6 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 78/274 (28%), Positives = 124/274 (45%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GPV +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGYAFV F + A+ AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+ ++ ++ F E + S FGK L+ +++ P G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELF---SQFGKTLSVKVMR---DPNG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV + E A A+E ++ +I+G +
Sbjct: 229 -KSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 192 (72.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+P + F+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 311 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
Score = 44 (20.5 bits), Expect = 3.7e-25, Sum P(2) = 3.7e-25
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 358 GIPGA-QPTAQQMAVAQAQPSMMAAY 382
G+P A Q A + AVA A P +A Y
Sbjct: 469 GVPTAVQNLAPRAAVAAAAPRAVAPY 494
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 273 (101.2 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 76/271 (28%), Positives = 132/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ ++LKE F+ FG+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RDP KSKG+ FVS+ K +A A+ MNG+ + + I + +K E KR
Sbjct: 221 KVMRDPNG-KSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 279 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 243 (90.6 bits), Expect = 2.0e-19, Sum P(2) = 2.0e-19
Identities = 78/274 (28%), Positives = 124/274 (45%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GPV +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGYAFV F + A+ AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+ ++ ++ F E + S FGK L+ +++ P G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDESLKELF---SQFGKTLSVKVMR---DPNG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV + E A A+E ++ +I+G +
Sbjct: 229 -KSKGFGFVSYEKHEDANKAVEEMNGKEISGKII 261
Score = 192 (72.6 bits), Expect = 1.5e-12, Sum P(2) = 1.5e-12
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+P + F+ +
Sbjct: 191 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAVEE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 251 MNGKEISGKIIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 311 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
Score = 44 (20.5 bits), Expect = 4.7e-25, Sum P(2) = 4.7e-25
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 358 GIPGA-QPTAQQMAVAQAQPSMMAAY 382
G+P A Q A + AVA A P +A Y
Sbjct: 498 GVPTAVQNLAPRAAVAAAAPRAVAPY 523
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 273 (101.2 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 76/271 (28%), Positives = 132/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 141 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 200
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ ++LKE F+ FG+ +
Sbjct: 201 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDESLKELFSQFGKTLSV 260
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RDP KSKG+ FVS+ K +A A+ MNG+ + + I + +K E KR
Sbjct: 261 KVMRDPSG-KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA-ELKR 318
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 319 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 372
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 373 KGFGFVCFSSPEEATKAV-----TEMNGRIV 398
Score = 192 (72.6 bits), Expect = 1.6e-12, Sum P(2) = 1.6e-12
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+P + F+ +
Sbjct: 231 TNVYIKNFGEEVDDESLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 290
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 291 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 350
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 351 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 408
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 409 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 443
Score = 182 (69.1 bits), Expect = 2.5e-11, Sum P(2) = 2.5e-11
Identities = 57/209 (27%), Positives = 95/209 (45%)
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG I +C
Sbjct: 112 MNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSC 168
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PAMTNER 183
++V D SKGYAFV F + A+ AI MNG L R + + +RK A +
Sbjct: 169 KVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 226
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
++ ++ F E + S FGK L+ +++ P G K KG
Sbjct: 227 AKEFTNVYIKNFGEEVDDESLKELF---SQFGKTLSVKVMR---DPSG--------KSKG 272
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTV 272
+ FV + E A A+E ++ +I+G +
Sbjct: 273 FGFVSYEKHEDANKAVEEMNGKEISGKVI 301
Score = 45 (20.9 bits), Expect = 5.3e-25, Sum P(2) = 5.3e-25
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 358 GIPGA-QPTAQQMAVAQAQPSMMAAY 382
G+P A Q A + AVA A P +A Y
Sbjct: 554 GVPTAVQTLAPRAAVAAAAPRAVAPY 579
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 272 (100.8 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 76/271 (28%), Positives = 131/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ + LKE F+ FG+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RDP KSKG+ FVS+ K +A A+ MNG+ + + I + +K E KR
Sbjct: 221 KVMRDPSG-KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 279 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 247 (92.0 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 78/274 (28%), Positives = 124/274 (45%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GPV +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGYAFV F + A+ AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+ ++ ++ F E + N FGK L+ +++ P G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDE---NLKELFSQFGKTLSVKVMR---DPSG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV + E A A+E ++ +I+G +
Sbjct: 229 -KSKGFGFVSYEKHEDANKAVEEMNGKEISGKVI 261
Score = 191 (72.3 bits), Expect = 1.9e-12, Sum P(2) = 1.9e-12
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+P + F+ +
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 251 MNGKEISGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 311 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
Score = 44 (20.5 bits), Expect = 5.5e-25, Sum P(2) = 5.5e-25
Identities = 12/26 (46%), Positives = 15/26 (57%)
Query: 358 GIPGA-QPTAQQMAVAQAQPSMMAAY 382
G+P A Q A + AVA A P +A Y
Sbjct: 485 GVPTAVQNLAPRAAVATAAPRAVAPY 510
>ASPGD|ASPL0000035772 [details] [associations]
symbol:rrmA species:162425 "Emericella nidulans"
[GO:0006527 "arginine catabolic process" evidence=IMP] [GO:0003729
"mRNA binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:BN001306
GO:GO:0003676 eggNOG:COG0724 OrthoDB:EOG44BFB8 EMBL:AACD01000169
HOGENOM:HOG000186228 OMA:PQAHYGQ RefSeq:XP_682359.1
ProteinModelPortal:Q5ARJ0 STRING:Q5ARJ0
EnsemblFungi:CADANIAT00009524 GeneID:2868083 KEGG:ani:AN9090.2
Uniprot:Q5ARJ0
Length = 393
Score = 200 (75.5 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
Identities = 51/176 (28%), Positives = 86/176 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP----GNDPYAFLEFXXXXXXXXXX 63
TTL++G L+ + E + L+ Q+G K+IR+ N Y F++F
Sbjct: 65 TTLWMGELEPWIDENFVRNLWFQMGEQVNVKMIRDKFSGRSNAGYCFVDFASPAAAAKAL 124
Query: 64 XXMNKRV-FLEKEMKVNWASSPG--NQPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APF 119
+ + K+NWA+ G ++ + D Y IFVGDL PE+ L F + F
Sbjct: 125 SLNGTPMPNTNRLFKLNWATGGGLADRSRDDRGPEYSIFVGDLGPEVNEYVLVSLFQSRF 184
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
+ +I+ DP + S+GY FV F + + + A++ M G + G+R +R + +T K
Sbjct: 185 PSCKSAKIMTDPISGMSRGYGFVRFSDENDQQRALSEMQGVYCGNRPMRISTATPK 240
Score = 143 (55.4 bits), Expect = 8.8e-25, Sum P(2) = 8.8e-25
Identities = 33/109 (30%), Positives = 47/109 (43%)
Query: 200 NQ-SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHA 258
NQ + P N TV+ GG + E+ + F FG I +++ KG FV+F + A A
Sbjct: 278 NQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKIPPGKGCGFVQFVQRHAAEMA 337
Query: 259 IESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNS-TAPQFPY 306
I + I V+ WG+ N+ P P P P PQ Y
Sbjct: 338 INQMQGYPIGNSRVRLSWGRSQNNSGPAGSPYRPAPPPPPMYLPPQHQY 386
Score = 113 (44.8 bits), Expect = 7.3e-06, Sum P(2) = 7.3e-06
Identities = 33/87 (37%), Positives = 45/87 (51%)
Query: 87 QP-KQDTS-NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
QP Q T N+ +FVG LS + L+ F FGEI+ +I P KG FV F
Sbjct: 275 QPMNQFTDPNNTTVFVGGLSGYVTEDELRSFFQGFGEITYVKI---PP---GKGCGFVQF 328
Query: 145 VKKAEAENAITAMNGQWLGSRSIRTNW 171
V++ AE AI M G +G+ +R +W
Sbjct: 329 VQRHAAEMAINQMQGYPIGNSRVRLSW 355
Score = 61 (26.5 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 22/89 (24%), Positives = 40/89 (44%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALF-SQIGPVKGCKVIREP--G-NDPYAFLEFXXXXX 58
D +++VG+L V E +L +LF S+ K K++ +P G + Y F+ F
Sbjct: 155 DRGPEYSIFVGDLGPEVNEYVLVSLFQSRFPSCKSAKIMTDPISGMSRGYGFVRFSDEND 214
Query: 59 XXXXXXXMNKRVFLEKEMKVNWASSPGNQ 87
M + M+++ A+ P N+
Sbjct: 215 QQRALSEMQGVYCGNRPMRISTAT-PKNK 242
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 263 (97.6 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 74/271 (27%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 37 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 96
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F FG +
Sbjct: 97 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 156
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 157 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 214
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 215 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 268
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 269 KGFGFVCFSSPEEATKAV-----TEMNGRIV 294
Score = 174 (66.3 bits), Expect = 3.0e-10, P = 3.0e-10
Identities = 57/209 (27%), Positives = 93/209 (44%)
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG I +C
Sbjct: 8 MNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFGNILSC 64
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PAMTNER 183
++V D SKGY FV F + AE AI MNG L R + + +RK A R
Sbjct: 65 KVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR 122
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
++ ++ F E + G FG L+ ++++ G K KG
Sbjct: 123 AKEFTNVYIKNFGEDMDDE---RLKELFGKFGPALSVKVMT---DESG--------KSKG 168
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTV 272
+ FV F E A A++ ++ ++NG +
Sbjct: 169 FGFVSFERHEDAQKAVDEMNGKELNGKQI 197
Score = 168 (64.2 bits), Expect = 1.2e-09, Sum P(2) = 1.2e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 127 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 186
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 187 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 246
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 247 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 304
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 305 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 338
Score = 42 (19.8 bits), Expect = 5.3e-24, Sum P(2) = 5.3e-24
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G +T A P+ T PQ
Sbjct: 400 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQ 447
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 263 (97.6 bits), Expect = 8.8e-24, Sum P(2) = 8.8e-24
Identities = 74/271 (27%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 236 (88.1 bits), Expect = 4.5e-18, Sum P(2) = 4.5e-18
Identities = 77/274 (28%), Positives = 122/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDE---RLKELFGKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 168 (64.2 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
Score = 42 (19.8 bits), Expect = 8.8e-24, Sum P(2) = 8.8e-24
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G +T A P+ T PQ
Sbjct: 463 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQ 510
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 261 (96.9 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 70/271 (25%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXXMN 67
+++ NLD S+ + L FS GP+ CKV +P Y F+++ +N
Sbjct: 135 IFIKNLDKSIDHKALHETFSAFGPILSCKVAVDPSGQSKGYGFVQYDTDEAAQGAIDKLN 194
Query: 68 KRVFLEKEMKVN-WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCR 126
+ +K++ V + P + +++V +LS + + L + F FG ++C
Sbjct: 195 GMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVKNLSESLSDEELNKVFGEFGVTTSCV 254
Query: 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ 186
I+RD + KSKG+ FV+F +A A+ A+NG+ + W K + ER+ +
Sbjct: 255 IMRDGEG-KSKGFGFVNFENSDDAARAVDALNGKTFDDKE----WFVGKAQKKS-ERETE 308
Query: 187 NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----- 241
+ E ++S +N +Y + + ++ + + F+PFGTI +V ++
Sbjct: 309 LKQKFEQSLKEAADKSQGSN--LYVKNLDESVTDDKLREHFAPFGTITSCKVMRDPSGVS 366
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
+G FV F+T E AT AI T++NG +
Sbjct: 367 RGSGFVAFSTPEEATRAI-----TEMNGKMI 392
Score = 199 (75.1 bits), Expect = 2.0e-13, Sum P(2) = 2.0e-13
Identities = 54/183 (29%), Positives = 89/183 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXX 65
T +YV NL S+++E L +F + G C ++R+ G + F+ F
Sbjct: 224 TNVYVKNLSESLSDEELNKVFGEFGVTTSCVIMRDGEGKSKGFGFVNFENSDDAARAVDA 283
Query: 66 MNKRVFLEKEMKVNWASSPGNQP---KQ----------DTSNHYHIFVGDLSPEIETQTL 112
+N + F +KE V A + KQ D S +++V +L + L
Sbjct: 284 LNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKEAADKSQGSNLYVKNLDESVTDDKL 343
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
+E FAPFG I++C+++RDP + S+G FV+F EA AIT MNG+ + ++ + +
Sbjct: 344 REHFAPFGTITSCKVMRDPSGV-SRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALA 402
Query: 173 TRK 175
RK
Sbjct: 403 QRK 405
Score = 195 (73.7 bits), Expect = 6.0e-13, Sum P(2) = 6.0e-13
Identities = 64/259 (24%), Positives = 115/259 (44%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXX 64
T+LYVG+LD +VT+ L F+Q G V +V R+ Y ++ +
Sbjct: 45 TSLYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYGYVNYATPQDASRALN 104
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N + ++V ++ + K N IF+ +L I+ + L E F+ FG I +
Sbjct: 105 ELNFMALNGRAIRVMYSVRDPSLRKSGVGN---IFIKNLDKSIDHKALHETFSAFGPILS 161
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
C++ DP +SKGY FV + A+ AI +NG L + + P ++ +
Sbjct: 162 CKVAVDPSG-QSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVG-----P--FVHKLQ 213
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGY 244
R S K + F VY ++ + + ++LN+ + I+ K KG+
Sbjct: 214 RDPSGEK-VKFTNVYVKNLSESLS------DEELNKVFGEFGVTTSCVIMRDGEGKSKGF 266
Query: 245 AFVKFTTKETATHAIESIH 263
FV F + A A+++++
Sbjct: 267 GFVNFENSDDAARAVDALN 285
Score = 137 (53.3 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 30/96 (31%), Positives = 51/96 (53%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A++ +Q T++ ++VGDL + L EAF G++ + R+ RD T +S GY
Sbjct: 33 AAAAAGAAQQGTTS---LYVGDLDATVTDSQLFEAFTQAGQVVSVRVCRDMTTRRSLGYG 89
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176
+V++ +A A+ +N L R+IR +S R P
Sbjct: 90 YVNYATPQDASRALNELNFMALNGRAIRVMYSVRDP 125
Score = 45 (20.9 bits), Expect = 8.9e-24, Sum P(2) = 8.9e-24
Identities = 8/20 (40%), Positives = 11/20 (55%)
Query: 360 PGAQPTAQQMAVAQAQPSMM 379
PG P QQ+ Q P+M+
Sbjct: 437 PGGPPMGQQLFYGQGPPAMI 456
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 263 (97.6 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 74/271 (27%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKELFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 236 (88.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 77/274 (28%), Positives = 122/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDE---RLKELFGKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 168 (64.2 bits), Expect = 5.3e-09, Sum P(2) = 5.3e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
Score = 37 (18.1 bits), Expect = 2.9e-23, Sum P(2) = 2.9e-23
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 463 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 510
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 260 (96.6 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 73/271 (26%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 56 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 115
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 116 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 175
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 176 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 233
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 234 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 287
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 288 KGFGFVCFSSPEEATKAV-----TEMNGRIV 313
Score = 186 (70.5 bits), Expect = 3.2e-11, Sum P(2) = 3.2e-11
Identities = 60/227 (26%), Positives = 99/227 (43%)
Query: 48 YAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEI 107
YA++ F MN V K +++ W+ + K N IF+ +L I
Sbjct: 9 YAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSI 65
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ + L + F+ FG I +C++V D SKGY FV F + AE AI MNG L R +
Sbjct: 66 DNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 123
Query: 168 RTN-WSTRKP-PAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSK 225
+ +RK A R ++ ++ F E + + G FG L+ ++++
Sbjct: 124 FVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT- 179
Query: 226 VFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
G K KG+ FV F E A A++ ++ ++NG +
Sbjct: 180 --DESG--------KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 216
Score = 167 (63.8 bits), Expect = 5.4e-09, Sum P(2) = 5.4e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 146 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 205
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 206 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 265
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 266 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 323
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 324 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 357
Score = 37 (18.1 bits), Expect = 4.4e-23, Sum P(2) = 4.4e-23
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 418 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 465
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 260 (96.6 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 73/271 (26%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 236 (88.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 77/274 (28%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 167 (63.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
Score = 37 (18.1 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 463 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 510
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 260 (96.6 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 73/271 (26%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 236 (88.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 77/274 (28%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 167 (63.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
Score = 37 (18.1 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 463 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 510
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 260 (96.6 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 73/271 (26%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 236 (88.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 77/274 (28%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 167 (63.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
Score = 37 (18.1 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 463 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 510
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 260 (96.6 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 73/271 (26%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 236 (88.1 bits), Expect = 1.5e-17, Sum P(2) = 1.5e-17
Identities = 77/274 (28%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 167 (63.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
Score = 37 (18.1 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 463 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 510
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 260 (96.6 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 73/271 (26%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 232 (86.7 bits), Expect = 5.6e-17, Sum P(2) = 5.6e-17
Identities = 76/274 (27%), Positives = 122/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L TE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDATEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 167 (63.8 bits), Expect = 6.8e-09, Sum P(2) = 6.8e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
Score = 37 (18.1 bits), Expect = 6.2e-23, Sum P(2) = 6.2e-23
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 463 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 510
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 258 (95.9 bits), Expect = 7.9e-23, Sum P(2) = 7.9e-23
Identities = 73/271 (26%), Positives = 126/271 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETHEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F +G +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAEMGARAKEFTNVYIKNFGEDMDDEKLKEIFCKYGPALSI 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
R++ D KSKG+ FVSF + +A+ A+ MNG+ + + + + +K T E KR
Sbjct: 221 RVMTDDSG-KSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y L++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRMTRYQG---VNLYVKNLDDGLDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 232 (86.7 bits), Expect = 4.4e-17, Sum P(2) = 4.4e-17
Identities = 76/274 (27%), Positives = 121/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMMTRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V + +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + ++C +G L+ +++ G
Sbjct: 182 EMGARAKEFTNVYIKNFGEDMDDEKLKE--IFCK-YGPALSIRVMT---DDSG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG V
Sbjct: 229 -KSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQV 261
Score = 160 (61.4 bits), Expect = 3.4e-08, Sum P(2) = 3.4e-08
Identities = 45/183 (24%), Positives = 84/183 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L +F + GP +V+ + + F+ F
Sbjct: 191 TNVYIKNFGEDMDDEKLKEIFCKYGPALSIRVMTDDSGKSKGFGFVSFERHEDAQRAVDE 250
Query: 66 MNKRVFLEKEMKVNWASSPGN----------QPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + K++ V A G Q KQD Y +++V +L ++ + L
Sbjct: 251 MNGKEMNGKQVYVGRAQKKGERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGLDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 38 (18.4 bits), Expect = 7.9e-23, Sum P(2) = 7.9e-23
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 351 RQVPGWQGIPGAQPTAQQMAVAQAQPSMMAAYAMQ 385
R VP ++ PG + Q+M P A +Q
Sbjct: 505 RGVPQYKYAPGVRNPQQRMPTQPQVPMQQPAVHVQ 539
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 270 (100.1 bits), Expect = 1.5e-22, P = 1.5e-22
Identities = 76/271 (28%), Positives = 131/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAADKAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ + LKE F+ FG+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLKELFSQFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RDP KSKG+ FVS+ K +A A+ MNG+ + + I + +K E KR
Sbjct: 221 KVMRDPSG-KSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 279 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 246 (91.7 bits), Expect = 7.1e-19, P = 7.1e-19
Identities = 78/274 (28%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GPV +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGYAFV F + A+ AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+ ++ ++ F E + N FGK L+ +++ P G
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDE---NLKELFSQFGKTLSVKVMR---DPSG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV + E A A+E ++ +I G +
Sbjct: 229 -KSKGFGFVSYEKHEDANKAVEEMNGKEITGKVI 261
Score = 191 (72.3 bits), Expect = 4.3e-12, P = 4.3e-12
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+P + F+ +
Sbjct: 191 TNVYIKNFGEEVDDENLKELFSQFGKTLSVKVMRDPSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 251 MNGKEITGKVIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 311 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 259 (96.2 bits), Expect = 2.6e-22, P = 2.6e-22
Identities = 82/288 (28%), Positives = 135/288 (46%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE+LL FS +GPV ++ R+ YA++ F
Sbjct: 11 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 70
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN + K +++ W+ + N +F+ +L I+ +TL E F+ FG+I +
Sbjct: 71 MNFDIIKGKSIRLMWSQRDAYLRRSGIGN---VFIKNLDKSIDNKTLYEHFSAFGKILSS 127
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL-GSRSIRTNWSTRKPPAMTNERK 184
+++ D Q SKGYAFV F ++ A+ AI MNG+ L G + + RK +R+
Sbjct: 128 KVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRK------DRE 179
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGT-IVDIRVFKEKG 243
+ +K F VY ++ + G + +++ SK ++ K KG
Sbjct: 180 AE-LRSKASEFTNVYIKN-------FGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 231
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTVKCFWG---KESENNSTLAQ 288
+ FV F + E A A+E ++ DING + F G K+ E + L Q
Sbjct: 232 FGFVSFDSHEAAKKAVEEMNGRDINGQLI--FVGRAQKKVERQAELKQ 277
Score = 189 (71.6 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 61/268 (22%), Positives = 123/268 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + KV+ + G+ YAF+ F MN
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 159
Query: 69 RVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
++ ++ V + ++ + S ++++ + +++ + LK+ F+ +G+ +
Sbjct: 160 KLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSV 219
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D KSKG+ FVSF A+ A+ MNG+ + + I + +K E K+
Sbjct: 220 KVMTDSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA-ELKQ 277
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
K + + +Y +++E + FS FG+I ++V +E
Sbjct: 278 MFEQLKR---ERIRGCQG---VKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 331
Query: 242 KGYAFVKFTTKETATHAIESIHNTDING 269
KG+ + F++ E AT A+ T++NG
Sbjct: 332 KGFGLICFSSPEDATKAM-----TEMNG 354
Score = 125 (49.1 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 42/178 (23%), Positives = 81/178 (45%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXX 62
S+ T +Y+ N + +E L +FS+ G KV+ + + F+ F
Sbjct: 187 SEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKA 246
Query: 63 XXXMNKR------VFLEK-EMKVNWASSPGN---QPKQDT---SNHYHIFVGDLSPEIET 109
MN R +F+ + + KV + Q K++ +++ +L I+
Sbjct: 247 VEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDD 306
Query: 110 QTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ L+ F+ FG IS +++++ +SKG+ + F +A A+T MNG+ LGS+ +
Sbjct: 307 EKLRNEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 362
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 265 (98.3 bits), Expect = 4.2e-22, P = 4.2e-22
Identities = 75/271 (27%), Positives = 131/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 30 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 89
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ + L+E F+ FG+ +
Sbjct: 90 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 149
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD KSKG+ FVS+ K +A A+ MNG+ + +SI + +K E KR
Sbjct: 150 KVMRDCSG-KSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA-ELKR 207
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 208 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 261
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 262 KGFGFVCFSSPEEATKAV-----TEMNGRIV 287
Score = 185 (70.2 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+ G + F+ +
Sbjct: 120 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 179
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 180 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 239
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 240 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 297
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 298 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 332
Score = 172 (65.6 bits), Expect = 5.2e-10, P = 5.2e-10
Identities = 54/209 (25%), Positives = 93/209 (44%)
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG I +C
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFGNILSC 57
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PAMTNER 183
++V D SKGYAFV F + A AI MNG L R + + +RK A +
Sbjct: 58 KVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK 115
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
++ ++ F E + N FGK L+ +++ K KG
Sbjct: 116 AKEFTNVYIKNFGEEVDDE---NLRELFSQFGKTLSVKVMRDCSG-----------KSKG 161
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTV 272
+ FV + E A A+E ++ +++G ++
Sbjct: 162 FGFVSYEKHEDANKAVEEMNGKEMSGKSI 190
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 265 (98.3 bits), Expect = 5.0e-22, P = 5.0e-22
Identities = 75/271 (27%), Positives = 131/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ + L+E F+ FG+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD KSKG+ FVS+ K +A A+ MNG+ + +SI + +K E KR
Sbjct: 221 KVMRDCSG-KSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 279 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 235 (87.8 bits), Expect = 2.3e-17, P = 2.3e-17
Identities = 75/274 (27%), Positives = 122/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GPV +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGYAFV F + A AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+ ++ ++ F E + N FGK L+ +++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDE---NLRELFSQFGKTLSVKVMRDCSG---------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV + E A A+E ++ +++G ++
Sbjct: 229 -KSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Score = 185 (70.2 bits), Expect = 2.0e-11, P = 2.0e-11
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+ G + F+ +
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 251 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 311 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 265 (98.3 bits), Expect = 5.5e-22, P = 5.5e-22
Identities = 75/271 (27%), Positives = 131/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQEAANKAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + E++ + L+E F+ FG+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGEEVDDENLRELFSQFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD KSKG+ FVS+ K +A A+ MNG+ + +SI + +K E KR
Sbjct: 221 KVMRDCSG-KSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 279 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 235 (87.8 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 75/274 (27%), Positives = 122/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GPV +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHSDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGYAFV F + A AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
+ ++ ++ F E + N FGK L+ +++
Sbjct: 182 ELGAKAKEFTNVYIKNFGEEVDDE---NLRELFSQFGKTLSVKVMRDCSG---------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV + E A A+E ++ +++G ++
Sbjct: 229 -KSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSI 261
Score = 185 (70.2 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N V +E L LFSQ G KV+R+ G + F+ +
Sbjct: 191 TNVYIKNFGEEVDDENLRELFSQFGKTLSVKVMRDCSGKSKGFGFVSYEKHEDANKAVEE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 251 MNGKEMSGKSIFVGRAQKKVERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 311 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 369 QRKEERKAHLTNQYMQRVAGMRALPANAILNQFQP 403
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 259 (96.2 bits), Expect = 6.0e-22, P = 6.0e-22
Identities = 82/288 (28%), Positives = 135/288 (46%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE+LL FS +GPV ++ R+ YA++ F
Sbjct: 69 SLYVGDLHADVTEDLLFRKFSTVGPVLSIRICRDQVTRRSLGYAYVNFLQLADAQKALDT 128
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN + K +++ W+ + N +F+ +L I+ +TL E F+ FG+I +
Sbjct: 129 MNFDIIKGKSIRLMWSQRDAYLRRSGIGN---VFIKNLDKSIDNKTLYEHFSAFGKILSS 185
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL-GSRSIRTNWSTRKPPAMTNERK 184
+++ D Q SKGYAFV F ++ A+ AI MNG+ L G + + RK +R+
Sbjct: 186 KVMSDDQG--SKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRK------DRE 237
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGT-IVDIRVFKEKG 243
+ +K F VY ++ + G + +++ SK ++ K KG
Sbjct: 238 AE-LRSKASEFTNVYIKN-------FGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKG 289
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTVKCFWG---KESENNSTLAQ 288
+ FV F + E A A+E ++ DING + F G K+ E + L Q
Sbjct: 290 FGFVSFDSHEAAKKAVEEMNGRDINGQLI--FVGRAQKKVERQAELKQ 335
Score = 189 (71.6 bits), Expect = 3.2e-12, P = 3.2e-12
Identities = 61/268 (22%), Positives = 123/268 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + KV+ + G+ YAF+ F MN
Sbjct: 158 VFIKNLDKSIDNKTLYEHFSAFGKILSSKVMSDDQGSKGYAFVHFQNQSAADRAIEEMNG 217
Query: 69 RVFLEKEMKVNWASSPGNQP---KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
++ ++ V + ++ + S ++++ + +++ + LK+ F+ +G+ +
Sbjct: 218 KLLKGCKVFVGRFKNRKDREAELRSKASEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSV 277
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D KSKG+ FVSF A+ A+ MNG+ + + I + +K E K+
Sbjct: 278 KVMTDSSG-KSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQA-ELKQ 335
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
K + + +Y +++E + FS FG+I ++V +E
Sbjct: 336 MFEQLKR---ERIRGCQG---VKLYIKNLDDTIDDEKLRNEFSSFGSISRVKVMQEEGQS 389
Query: 242 KGYAFVKFTTKETATHAIESIHNTDING 269
KG+ + F++ E AT A+ T++NG
Sbjct: 390 KGFGLICFSSPEDATKAM-----TEMNG 412
Score = 125 (49.1 bits), Expect = 5.7e-05, P = 5.7e-05
Identities = 42/178 (23%), Positives = 81/178 (45%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXX 62
S+ T +Y+ N + +E L +FS+ G KV+ + + F+ F
Sbjct: 245 SEFTNVYIKNFGGDMDDERLKDVFSKYGKTLSVKVMTDSSGKSKGFGFVSFDSHEAAKKA 304
Query: 63 XXXMNKR------VFLEK-EMKVNWASSPGN---QPKQDT---SNHYHIFVGDLSPEIET 109
MN R +F+ + + KV + Q K++ +++ +L I+
Sbjct: 305 VEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQLKRERIRGCQGVKLYIKNLDDTIDD 364
Query: 110 QTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ L+ F+ FG IS +++++ +SKG+ + F +A A+T MNG+ LGS+ +
Sbjct: 365 EKLRNEFSSFGSISRVKVMQEEG--QSKGFGLICFSSPEDATKAMTEMNGRILGSKPL 420
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 262 (97.3 bits), Expect = 1.0e-21, P = 1.0e-21
Identities = 74/271 (27%), Positives = 131/271 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 101 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F+ +G+ +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGAKAKEFTNVYIKNFGDDMDDERLKELFSKYGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ DP T KSKG+ FVSF K +A A+ MNG+ + + + + +K E KR
Sbjct: 221 KVMTDP-TGKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQA-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 279 RFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEDGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 251 (93.4 bits), Expect = 8.1e-20, P = 8.1e-20
Identities = 82/274 (29%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GPV +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKPPAM 179
I +C++V D SKGYAFV F + A+ AI MNG L R + + +RK
Sbjct: 124 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRK---- 177
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGT-IVDIRV 238
ER+ + K F VY ++ + + +EL SK ++
Sbjct: 178 --EREAELG-AKAKEFTNVYIKN-------FGDDMDDERLKELFSKYGKTLSVKVMTDPT 227
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A+E ++ DING V
Sbjct: 228 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMV 261
Score = 182 (69.1 bits), Expect = 4.3e-11, P = 4.3e-11
Identities = 56/215 (26%), Positives = 104/215 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LFS+ G KV+ +P G + F+ F
Sbjct: 191 TNVYIKNFGDDMDDERLKELFSKYGKTLSVKVMTDPTGKSKGFGFVSFEKHEDANKAVEE 250
Query: 66 MN------KRVFLEK-EMKVNWASSPGN---QPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K VF+ + + KV + Q KQ+ + Y ++++ +L I+ + L
Sbjct: 251 MNGKDINGKMVFVGRAQKKVERQAELKRRFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 311 RKEFSPFGSITSAKVMLEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 369 QRKEERKAHLTNQYMQRIAGMRALPANTIINQFQP 403
>ZFIN|ZDB-GENE-020419-22 [details] [associations]
symbol:sf3b4 "splicing factor 3b, subunit 4"
species:7955 "Danio rerio" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-020419-22 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 HOVERGEN:HBG002295 EMBL:AY099515
IPI:IPI00495328 UniGene:Dr.1505 ProteinModelPortal:Q8JGT1
SMR:Q8JGT1 STRING:Q8JGT1 InParanoid:Q8JGT1 ArrayExpress:Q8JGT1
Uniprot:Q8JGT1
Length = 400
Score = 249 (92.7 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 65/177 (36%), Positives = 97/177 (54%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
+ +Q +YVG LD V+E LL LF Q GPV + ++ G + Y F+EF
Sbjct: 8 ERNQDAAVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ N+ +N IF+G+L PEI+ + L + F+ F
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEIDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 109 (43.4 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 2 AAGPISERNQDAA----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 57
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
FV F+ + +A+ AI MN L + IR N
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 86 (35.3 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 152 FDASDAAIEAMN 163
Score = 40 (19.1 bits), Expect = 1.3e-21, Sum P(2) = 1.3e-21
Identities = 7/15 (46%), Positives = 8/15 (53%)
Query: 289 PSAPTTPQPNSTAPQ 303
P P P P + APQ
Sbjct: 258 PGMPMPPAPGTPAPQ 272
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 260 (96.6 bits), Expect = 1.8e-21, P = 1.8e-21
Identities = 73/271 (26%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 236 (88.1 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 77/274 (28%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 167 (63.8 bits), Expect = 2.2e-09, P = 2.2e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
>UNIPROTKB|H9L019 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:AADN02044320 RefSeq:XP_423721.2 UniGene:Gga.51399
ProteinModelPortal:H9L019 Ensembl:ENSGALT00000021786 GeneID:426042
KEGG:gga:426042 Uniprot:H9L019
Length = 418
Score = 254 (94.5 bits), Expect = 2.0e-21, P = 2.0e-21
Identities = 66/177 (37%), Positives = 98/177 (55%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E LL LF Q GPV + ++ G + Y F+EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ N+ +N IF+G+L PEI+ + L + F+ F
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEIDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 109 (43.4 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 2 AAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 57
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
FV F+ + +A+ AI MN L + IR N
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 86 (35.3 bits), Expect = 6.9e-08, Sum P(2) = 6.9e-08
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 152 FDASDAAIEAMN 163
>UNIPROTKB|F1MWR2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 KO:K12831 OMA:VSETLLW CTD:10262
EMBL:DAAA02007272 IPI:IPI00717302 RefSeq:NP_001192513.1
UniGene:Bt.3914 ProteinModelPortal:F1MWR2
Ensembl:ENSBTAT00000016577 GeneID:506123 KEGG:bta:506123
NextBio:20867458 ArrayExpress:F1MWR2 Uniprot:F1MWR2
Length = 424
Score = 254 (94.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 66/177 (37%), Positives = 98/177 (55%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E LL LF Q GPV + ++ G + Y F+EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ N+ +N IF+G+L PEI+ + L + F+ F
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEIDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 109 (43.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 2 AAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 57
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
FV F+ + +A+ AI MN L + IR N
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 86 (35.3 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 152 FDASDAAIEAMN 163
>UNIPROTKB|E2R5T2 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:AAEX03011046 EMBL:AAEX03011045 RefSeq:XP_540295.3
ProteinModelPortal:E2R5T2 Ensembl:ENSCAFT00000018450 GeneID:483177
KEGG:cfa:483177 NextBio:20857615 Uniprot:E2R5T2
Length = 424
Score = 254 (94.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 66/177 (37%), Positives = 98/177 (55%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E LL LF Q GPV + ++ G + Y F+EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ N+ +N IF+G+L PEI+ + L + F+ F
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEIDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 109 (43.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 2 AAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 57
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
FV F+ + +A+ AI MN L + IR N
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 86 (35.3 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 152 FDASDAAIEAMN 163
>UNIPROTKB|Q15427 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005689 "U12-type
spliceosomal complex" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=TAS] [GO:0000375 "RNA splicing, via transesterification
reactions" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380
"RNA splicing" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471121 GO:GO:0000398 EMBL:AL591493 eggNOG:COG0724
HOVERGEN:HBG002295 GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831
EMBL:AL590487 OMA:VSETLLW EMBL:L35013 EMBL:BC004273 EMBL:BC013886
EMBL:BC090883 IPI:IPI00017339 PIR:A54964 RefSeq:NP_005841.1
UniGene:Hs.516160 PDB:1X5T PDB:1X5U PDBsum:1X5T PDBsum:1X5U
ProteinModelPortal:Q15427 SMR:Q15427 IntAct:Q15427
MINT:MINT-1032702 STRING:Q15427 PhosphoSite:Q15427 DMDM:2500587
PaxDb:Q15427 PeptideAtlas:Q15427 PRIDE:Q15427 DNASU:10262
Ensembl:ENST00000271628 Ensembl:ENST00000582851 GeneID:10262
KEGG:hsa:10262 UCSC:uc001etk.2 CTD:10262 GeneCards:GC01M149895
HGNC:HGNC:10771 HPA:HPA028578 MIM:154400 MIM:605593
neXtProt:NX_Q15427 Orphanet:245 PharmGKB:PA35689 InParanoid:Q15427
OrthoDB:EOG4M65JJ PhylomeDB:Q15427 EvolutionaryTrace:Q15427
GenomeRNAi:10262 NextBio:38880 ArrayExpress:Q15427 Bgee:Q15427
CleanEx:HS_SF3B4 Genevestigator:Q15427 GermOnline:ENSG00000143368
Uniprot:Q15427
Length = 424
Score = 254 (94.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 66/177 (37%), Positives = 98/177 (55%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E LL LF Q GPV + ++ G + Y F+EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ N+ +N IF+G+L PEI+ + L + F+ F
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEIDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 109 (43.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 2 AAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 57
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
FV F+ + +A+ AI MN L + IR N
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 86 (35.3 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 152 FDASDAAIEAMN 163
>UNIPROTKB|F1SDG0 [details] [associations]
symbol:SF3B4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 KO:K12831 OMA:VSETLLW
CTD:10262 EMBL:CU468464 RefSeq:XP_001926524.1 UniGene:Ssc.3222
ProteinModelPortal:F1SDG0 Ensembl:ENSSSCT00000007303
GeneID:100157814 KEGG:ssc:100157814 Uniprot:F1SDG0
Length = 424
Score = 254 (94.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 66/177 (37%), Positives = 98/177 (55%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E LL LF Q GPV + ++ G + Y F+EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ N+ +N IF+G+L PEI+ + L + F+ F
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEIDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 109 (43.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 2 AAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 57
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
FV F+ + +A+ AI MN L + IR N
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 86 (35.3 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 152 FDASDAAIEAMN 163
>MGI|MGI:109580 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003674 "molecular_function" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109580 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 CTD:10262
OrthoDB:EOG4M65JJ EMBL:AK047751 EMBL:AK135543 EMBL:BC024418
EMBL:BC026567 EMBL:BC085273 IPI:IPI00154082 RefSeq:NP_694693.1
UniGene:Mm.219671 ProteinModelPortal:Q8QZY9 SMR:Q8QZY9
IntAct:Q8QZY9 STRING:Q8QZY9 PhosphoSite:Q8QZY9 PaxDb:Q8QZY9
PRIDE:Q8QZY9 Ensembl:ENSMUST00000076372 GeneID:107701
KEGG:mmu:107701 UCSC:uc008qme.1 InParanoid:Q8QZY9 OMA:FASISHH
NextBio:359278 Bgee:Q8QZY9 Genevestigator:Q8QZY9 Uniprot:Q8QZY9
Length = 424
Score = 254 (94.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 66/177 (37%), Positives = 98/177 (55%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E LL LF Q GPV + ++ G + Y F+EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ N+ +N IF+G+L PEI+ + L + F+ F
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEIDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 109 (43.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 2 AAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 57
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
FV F+ + +A+ AI MN L + IR N
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 86 (35.3 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 152 FDASDAAIEAMN 163
>RGD|1309667 [details] [associations]
symbol:Sf3b4 "splicing factor 3b, subunit 4" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA;ISO] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1309667 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GeneTree:ENSGT00690000101901 HSSP:Q15427 HOVERGEN:HBG002295
GO:GO:0005689 HOGENOM:HOG000200535 KO:K12831 OMA:VSETLLW CTD:10262
OrthoDB:EOG4M65JJ EMBL:BC078997 IPI:IPI00371860
RefSeq:NP_001011951.1 UniGene:Rn.116275 ProteinModelPortal:Q6AYL5
SMR:Q6AYL5 STRING:Q6AYL5 PRIDE:Q6AYL5 Ensembl:ENSRNOT00000028758
GeneID:295270 KEGG:rno:295270 UCSC:RGD:1309667 InParanoid:Q6AYL5
NextBio:639268 Genevestigator:Q6AYL5 Uniprot:Q6AYL5
Length = 424
Score = 254 (94.5 bits), Expect = 2.1e-21, P = 2.1e-21
Identities = 66/177 (37%), Positives = 98/177 (55%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E LL LF Q GPV + ++ G + Y F+EF
Sbjct: 8 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ N+ +N IF+G+L PEI+ + L + F+ F
Sbjct: 68 DYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEIDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R I +++ +K
Sbjct: 124 GVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKK 180
Score = 109 (43.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 28/90 (31%), Positives = 46/90 (51%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
A+ P ++ QD + ++VG L ++ L E F G + N + +D T + +GY
Sbjct: 2 AAGPISERNQDAT----VYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYG 57
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
FV F+ + +A+ AI MN L + IR N
Sbjct: 58 FVEFLSEEDADYAIKIMNMIKLYGKPIRVN 87
Score = 86 (35.3 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 92 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 151
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 152 FDASDAAIEAMN 163
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 259 (96.2 bits), Expect = 2.3e-21, P = 2.3e-21
Identities = 74/271 (27%), Positives = 130/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ YAF+ F MN
Sbjct: 102 VFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNG 161
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ Q LKE F +G+ +
Sbjct: 162 MLLNDRKVFVGRFKSRKEREAEMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKYGKTLSV 221
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ DP T KS+G+ FVS+ K +A A+ MNG L +++ + +K E KR
Sbjct: 222 KVMTDP-TGKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQA-ELKR 279
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSPFG+I +V E
Sbjct: 280 KFEQLK----QERISRYQGVN--LYIKNLDDTIDDEKLRKEFSPFGSITSAKVMLEEGRS 333
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 334 KGFGFVCFSSPEEATKAV-----TEMNGRIV 359
Score = 249 (92.7 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 82/291 (28%), Positives = 135/291 (46%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L +TE +L FS GPV +V R+ + YA++ F
Sbjct: 8 SYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQQPADAE 67
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N +F+ +L I+ + L + F+ FG
Sbjct: 68 RALDTMNFDVVKGKPIRIMWSQRDPSLRKSGVGN---VFIKNLDKSIDNKALYDTFSAFG 124
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGYAFV F + A+ AI MNG L R + + +RK A
Sbjct: 125 NILSCKVVCDENG--SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREA 182
Query: 179 MTNERKRQNSHTKTITF-DEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237
+ ++ ++ F D++ +Q Y GK L+ ++++ P G
Sbjct: 183 EMGAKAKEFTNVYIKNFGDDMDDQRLKELFDKY----GKTLSVKVMT---DPTG------ 229
Query: 238 VFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
K +G+ FV + E A A+E ++ T++NG TV F G+ + A+
Sbjct: 230 --KSRGFGFVSYEKHEDANKAVEEMNGTELNGKTV--FVGRAQKKMERQAE 276
Score = 170 (64.9 bits), Expect = 1.0e-09, P = 1.0e-09
Identities = 53/215 (24%), Positives = 103/215 (47%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + ++ L LF + G KV+ +P G + F+ +
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDPTGKSRGFGFVSYEKHEDANKAVEE 251
Query: 66 MN------KRVFL---EKEMKVNWA-SSPGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K VF+ +K+M+ Q KQ+ + Y ++++ +L I+ + L
Sbjct: 252 MNGTELNGKTVFVGRAQKKMERQAELKRKFEQLKQERISRYQGVNLYIKNLDDTIDDEKL 311
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ +GS+ + +
Sbjct: 312 RKEFSPFGSITSAKVMLEEG--RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALA 369
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + + NQ P
Sbjct: 370 QRKEERKAHLTNQYMQRIAGMRAMPANAIINQFQP 404
>UNIPROTKB|A6NKZ9 [details] [associations]
symbol:TIAL1 "Nucleolysin TIAR" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000206748 EMBL:AC012468 HGNC:HGNC:11804
ChiTaRS:TIAL1 IPI:IPI00646522 ProteinModelPortal:A6NKZ9 SMR:A6NKZ9
STRING:A6NKZ9 Ensembl:ENST00000369086 ArrayExpress:A6NKZ9
Bgee:A6NKZ9 Uniprot:A6NKZ9
Length = 85
Score = 249 (92.7 bits), Expect = 3.0e-21, P = 3.0e-21
Identities = 46/85 (54%), Positives = 58/85 (68%)
Query: 39 VIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHI 98
+ NDPY F+EF MN R L KE+KVNWA++P +Q K+DTSNH+H+
Sbjct: 2 ITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQ-KKDTSNHFHV 60
Query: 99 FVGDLSPEIETQTLKEAFAPFGEIS 123
FVGDLSPEI T+ +K AFAPFG+IS
Sbjct: 61 FVGDLSPEITTEDIKSAFAPFGKIS 85
>TAIR|locus:2046298 [details] [associations]
symbol:emb2444 "embryo defective 2444" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009793 "embryo development ending in seed
dormancy" evidence=NAS] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:CP002685 GO:GO:0005730 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC006135 HSSP:P11940
KO:K12831 EMBL:AY150466 IPI:IPI00516901 PIR:B84565
RefSeq:NP_179441.1 UniGene:At.20306 ProteinModelPortal:Q9ZU66
SMR:Q9ZU66 STRING:Q9ZU66 PRIDE:Q9ZU66 EnsemblPlants:AT2G18510.1
GeneID:816366 KEGG:ath:AT2G18510 TAIR:At2g18510 InParanoid:Q9ZU66
OMA:FIEYRSE PhylomeDB:Q9ZU66 ProtClustDB:CLSN2683050
Genevestigator:Q9ZU66 Uniprot:Q9ZU66
Length = 363
Score = 243 (90.6 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 58/177 (32%), Positives = 97/177 (54%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFXXXXXX 59
+ +Q T+YVG LD ++EELL LF Q GPV V ++ + Y F+E+
Sbjct: 20 ERNQDATVYVGGLDAQLSEELLWELFVQAGPVVNVYVPKDRVTNLHQNYGFIEYRSEEDA 79
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K ++VN AS Q K+ ++F+G+L P+++ + L + F+ F
Sbjct: 80 DYAIKVLNMIKLHGKPIRVNKAS----QDKKSLDVGANLFIGNLDPDVDEKLLYDTFSAF 135
Query: 120 GEI-SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I SN +I+RDP T S+G+ F+S+ ++ AI +M GQ+L +R I +++ +K
Sbjct: 136 GVIASNPKIMRDPDTGNSRGFGFISYDSFEASDAAIESMTGQYLSNRQITVSYAYKK 192
Score = 41 (19.5 bits), Expect = 4.8e-21, Sum P(2) = 4.8e-21
Identities = 10/39 (25%), Positives = 15/39 (38%)
Query: 276 WGKESENNSTLAQPSAPTTPQPNSTAPQFPYIYNQQMGY 314
W + + +S + P PQ P P N Q G+
Sbjct: 272 WPSQPQQHSMVPPPMQFRPPQGMPPPPP-PQFLNHQQGF 309
Score = 38 (18.4 bits), Expect = 9.9e-21, Sum P(2) = 9.9e-21
Identities = 7/21 (33%), Positives = 8/21 (38%)
Query: 295 PQPNSTAPQFPYIYNQQMGYW 315
P P P P +Y Q W
Sbjct: 252 PAPRQPPPPPPQVYQTQPPSW 272
Score = 37 (18.1 bits), Expect = 1.3e-20, Sum P(2) = 1.3e-20
Identities = 7/14 (50%), Positives = 9/14 (64%)
Query: 289 PSAPTTPQPNSTAP 302
PS P+ PQ +S P
Sbjct: 270 PSWPSQPQQHSMVP 283
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 254 (94.5 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 78/278 (28%), Positives = 136/278 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
++V NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFVKNLDRSIDSKTLYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEEAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
++++ V S ++ + ++++ +L +++ + L++ F+ FG +
Sbjct: 161 MFLNDRKVFVGRFKSRRDRQAELGARAKEFTNVYIKNLGEDMDDERLQDLFSRFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A A+ MNG+ L + I + +K T E K
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQT-ELKH 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGG---FGKDLNE----ELVSKVFSPFGTIVDIRV 238
+ K D+ + P + +V C G + K+L++ E + K FSPFGTI +V
Sbjct: 279 KFGQMKQ---DKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPFGTITSAKV 335
Query: 239 FKE----KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
E KG+ FV F++ E AT A+ T++NG V
Sbjct: 336 TMEGGRSKGFGFVCFSSPEEATKAV-----TEMNGRIV 368
Score = 241 (89.9 bits), Expect = 3.8e-18, P = 3.8e-18
Identities = 78/270 (28%), Positives = 121/270 (44%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ YA + F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVYRDRTTRRSLGYASVNFQQLEDAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ + K N IFV +L I+++TL + F+ FG I +C
Sbjct: 72 MNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFVKNLDRSIDSKTLYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++V D SKGY FV F + EAE AI MNG +L R + + R R
Sbjct: 129 KVVCDENG--SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVG-------RFKSRRDR 179
Query: 186 QNS-HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTI--VDIRVFKEK 242
Q + F VY ++ + + ++L S+ F P ++ + K K
Sbjct: 180 QAELGARAKEFTNVYIKNLGED-------MDDERLQDLFSR-FGPALSVKVMTDESGKSK 231
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTV 272
G+ FV F E A A++ ++ D+NG +
Sbjct: 232 GFGFVSFERHEDARKAVDEMNGKDLNGKQI 261
Score = 126 (49.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 33/116 (28%), Positives = 62/116 (53%)
Query: 68 KRVFLEKEMKVNWASSPGNQPK-----QDTS---NHYHIFVGDLSPEIETQTLKEAFAPF 119
K+V + E+K + ++PK QD S +++V +L I+ + L++ F+PF
Sbjct: 268 KKVERQTELKHKFGQMKQDKPKIEQVPQDRSVRCQGVNLYVKNLDDGIDDERLRKEFSPF 327
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I++ ++ + +SKG+ FV F EA A+T MNG+ + ++ + + RK
Sbjct: 328 GTITSAKVTMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRK 381
Score = 70 (29.7 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 22/76 (28%), Positives = 33/76 (43%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ NL + +E L LFS+ GP KV+ E G + F+ F
Sbjct: 191 TNVYIKNLGEDMDDERLQDLFSRFGPALSVKVMTDESGKSKGFGFVSFERHEDARKAVDE 250
Query: 66 MNKRVFLEKEMKVNWA 81
MN + K++ V A
Sbjct: 251 MNGKDLNGKQIYVGRA 266
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 246 (91.7 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 82/313 (26%), Positives = 138/313 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKV-IREPGNDP-YAFLEFXXXXXXXXXXXXMN 67
+++ NLD S+ + L FS G + CKV + G Y F+++ +N
Sbjct: 126 IFIKNLDESIDHKALHDTFSSFGNIVSCKVAVDSSGQSKGYGFVQYANEESAQKAIEKLN 185
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTSNHY---HIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V Q + T+N +++V +L+ LK AF +G+I++
Sbjct: 186 GMLLNDKQVYVG--PFLRRQERDSTANKTKFTNVYVKNLAESTTDDDLKNAFGEYGKITS 243
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+++D + KSKG+ FV+F +A A+ ++NG + + +K T R
Sbjct: 244 AVVMKDGEG-KSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRV 302
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
R + K D+ QSS +Y +++E + ++FSPFGT+ +V ++
Sbjct: 303 RYEQNLKEAA-DKF--QSS----NLYVKNLDPSISDEKLKEIFSPFGTVTSSKVMRDPNG 355
Query: 242 --KGYAFVKFTTKETATHAIESIHNTDINGHT--VKCFWGKESENNSTLAQPSA--PTTP 295
KG FV F T E AT A+ + I V KE AQ S P
Sbjct: 356 TSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQVRPVAM 415
Query: 296 QPNSTAPQFPYIY 308
QP S P+ P +Y
Sbjct: 416 QP-SVGPRMP-VY 426
Score = 207 (77.9 bits), Expect = 6.3e-15, Sum P(2) = 6.3e-15
Identities = 69/261 (26%), Positives = 116/261 (44%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFXXXXXXXXXXX 64
T+LYVG+LD +VT+ L F Q+G V +V R+ + Y ++ F
Sbjct: 36 TSLYVGDLDFNVTDSQLFDAFGQMGTVVTVRVCRDLVTRRSLGYGYVNFTNPQDAARAIQ 95
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N K ++V ++ P S +IF+ +L I+ + L + F+ FG I +
Sbjct: 96 ELNYIPLYGKPIRVMYSH---RDPSVRRSGAGNIFIKNLDESIDHKALHDTFSSFGNIVS 152
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
C++ D +SKGY FV + + A+ AI +NG L + + R+ ++
Sbjct: 153 CKVAVDSSG-QSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRR-------QE 204
Query: 185 RQNSHTKTITFDEVY--NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
R ++ KT F VY N + T FG+ K+ S ++ K K
Sbjct: 205 RDSTANKT-KFTNVYVKNLAESTTDDDLKNAFGE------YGKITS--AVVMKDGEGKSK 255
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV F + A A+ES++
Sbjct: 256 GFGFVNFENADDAARAVESLN 276
Score = 168 (64.2 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 48/183 (26%), Positives = 84/183 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXX 65
T +YV NL S T++ L F + G + V+++ G + F+ F
Sbjct: 215 TNVYVKNLAESTTDDDLKNAFGEYGKITSAVVMKDGEGKSKGFGFVNFENADDAARAVES 274
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQ-------------DTSNHYHIFVGDLSPEIETQTL 112
+N F +KE V A + + D +++V +L P I + L
Sbjct: 275 LNGHKFDDKEWYVGRAQKKSERETELRVRYEQNLKEAADKFQSSNLYVKNLDPSISDEKL 334
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
KE F+PFG +++ +++RDP SKG FV+F EA A++ ++G+ + S+ + +
Sbjct: 335 KEIFSPFGTVTSSKVMRDPNGT-SKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIA 393
Query: 173 TRK 175
RK
Sbjct: 394 QRK 396
Score = 49 (22.3 bits), Expect = 1.4e-20, Sum P(2) = 1.4e-20
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 349 VGRQVPGWQGIPGAQPTAQQMAVAQAQPSMMA---AYAMQQ 386
VG ++P + PG QQM QA P+M+ Y QQ
Sbjct: 419 VGPRMPVYP--PGGPGIGQQMFYGQAPPAMIPPQPGYGYQQ 457
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 252 (93.8 bits), Expect = 4.1e-20, P = 4.1e-20
Identities = 78/288 (27%), Positives = 137/288 (47%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXX 60
E+ +LYVG+L+ SV+E L +FS IG V +V R+ YA++ F
Sbjct: 34 ENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAYVNFNDHEAGR 93
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N + ++ W+ + K+ + N IF+ +L P+I+ + L + F+ FG
Sbjct: 94 KAIEQLNYTPIKGRLCRIMWSQRDPSLRKKGSGN---IFIKNLHPDIDNKALYDTFSVFG 150
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT 180
+I + +I D + KSKG+ FV F ++ A+ AI A+NG L + I P
Sbjct: 151 DILSSKIATD-ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYV-----APHLSR 204
Query: 181 NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPF--GTIVDIRV 238
ER Q TK + +Y ++ + T + +EL +K F P ++
Sbjct: 205 KERDSQLEETKA-HYTNLYVKNINSETT-------DEQFQELFAK-FGPIVSASLEKDAD 255
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTL 286
K KG+ FV + E A A+E+++++++NG K + G+ + N +
Sbjct: 256 GKLKGFGFVNYEKHEDAVKAVEALNDSELNGE--KLYVGRAQKKNERM 301
Score = 193 (73.0 bits), Expect = 2.1e-12, P = 2.1e-12
Identities = 64/290 (22%), Positives = 125/290 (43%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXXMN 67
+++ NL + + L FS G + K+ E G + F+ F +N
Sbjct: 128 IFIKNLHPDIDNKALYDTFSVFGDILSSKIATDENGKSKGFGFVHFEEEGAAKEAIDALN 187
Query: 68 KRVFLEKEMKV--NWASSPGNQPKQDTSNHY-HIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +E+ V + + + ++T HY +++V +++ E + +E FA FG I +
Sbjct: 188 GMLLNGQEIYVAPHLSRKERDSQLEETKAHYTNLYVKNINSETTDEQFQELFAKFGPIVS 247
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ +D K KG+ FV++ K +A A+ A+N L + + +K M +K
Sbjct: 248 ASLEKDADG-KLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKK 306
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----- 239
+ ++ + + ++ +++E + + F+P+GTI +V
Sbjct: 307 QYEAY-------RLEKMAKYQGVNLFVKNLDDSVDDEKLEEEFAPYGTITSAKVMRTENG 359
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE-NNSTLAQ 288
K KG+ FV F+T E AT AI + + G + + + S LAQ
Sbjct: 360 KSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQ 409
Score = 143 (55.4 bits), Expect = 9.0e-07, P = 9.0e-07
Identities = 45/183 (24%), Positives = 82/183 (44%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND--PYAFLEFXXXXXXXXXXXX 65
T LYV N++ T+E LF++ GP+ + ++ + F+ +
Sbjct: 219 TNLYVKNINSETTDEQFQELFAKFGPIVSASLEKDADGKLKGFGFVNYEKHEDAVKAVEA 278
Query: 66 MNKRVFLEKEMKVNWASSPGNQ----PKQ------DTSNHY---HIFVGDLSPEIETQTL 112
+N +++ V A + KQ + Y ++FV +L ++ + L
Sbjct: 279 LNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLEKMAKYQGVNLFVKNLDDSVDDEKL 338
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
+E FAP+G I++ +++R + KSKG+ FV F EA AIT N Q + + + +
Sbjct: 339 EEEFAPYGTITSAKVMRT-ENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIA 397
Query: 173 TRK 175
RK
Sbjct: 398 QRK 400
Score = 142 (55.0 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
++ G++ + ++ ++VGDL P + L + F+P G +S+ R+ RD T S GYA+
Sbjct: 24 AATGSESQSVENSSASLYVGDLEPSVSEAHLYDIFSPIGSVSSIRVCRDAITKTSLGYAY 83
Query: 142 VSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176
V+F AI +N + R R WS R P
Sbjct: 84 VNFNDHEAGRKAIEQLNYTPIKGRLCRIMWSQRDP 118
>UNIPROTKB|Q5U259 [details] [associations]
symbol:elavl1-b "ELAV-like protein 1-B" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005938 "cell cortex" evidence=IDA] [GO:0007369
"gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA binding"
evidence=ISS] [GO:0008298 "intracellular mRNA localization"
evidence=IMP] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0051259 "protein
oligomerization" evidence=ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 KO:K13088
TIGRFAMs:TIGR01661 EMBL:BC086269 RefSeq:NP_001088628.1
UniGene:Xl.22886 ProteinModelPortal:Q5U259 SMR:Q5U259 PRIDE:Q5U259
GeneID:495680 KEGG:xla:495680 CTD:495680 Xenbase:XB-GENE-865489
Uniprot:Q5U259
Length = 326
Score = 193 (73.0 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 50/163 (30%), Positives = 85/163 (52%)
Query: 1 MC-DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXX 56
+C D+ T L V L ++T++ L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNA 71
Query: 57 XXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF 116
+N K +KV++A +P +T ++++ L + + +++ F
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSFA-----RPSSETIKDANLYISGLPRTMTQKDVEDMF 126
Query: 117 APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
PFG I N R++ D T S+G AF+ F K++EAE AI + NG
Sbjct: 127 LPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 28/83 (33%), Positives = 50/83 (60%)
Query: 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152
S+ + IF+ +L + + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 241 SSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAM 300
Query: 153 AITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG ++++ ++ T K
Sbjct: 301 AIASLNGYRLGDKTLQVSFKTSK 323
Score = 118 (46.6 bits), Expect = 7.9e-11, Sum P(2) = 7.9e-11
Identities = 27/115 (23%), Positives = 56/115 (48%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++ V L + L+ F+ GE+ + +++RD S GY FV+++ +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKD 73
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSP 204
AE AI +NG L S++I+ +++ + + + +T+T +V + P
Sbjct: 74 AERAINTLNGLRLQSKTIKVSFARPSSETIKDANLYISGLPRTMTQKDVEDMFLP 128
Score = 101 (40.6 bits), Expect = 4.2e-20, Sum P(2) = 4.2e-20
Identities = 24/91 (26%), Positives = 48/91 (52%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H +I+ V + +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 227 HMSSISSVNVASSASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTVK 273
G+ FV T E A AI S++ + T++
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKTLQ 316
>POMBASE|SPAC17A2.09c [details] [associations]
symbol:csx1 "RNA-binding protein Csx1" species:4896
"Schizosaccharomyces pombe" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=ISO] [GO:0003729 "mRNA binding"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0070935 "3'-UTR-mediated mRNA
stabilization" evidence=ISO] [GO:2000815 "regulation of mRNA
stability involved in response to oxidative stress" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 PomBase:SPAC17A2.09c GO:GO:0005829 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0000932 eggNOG:COG0724 GO:GO:2000815
EMBL:D83417 EMBL:D83418 PIR:T37810 RefSeq:NP_594243.1
ProteinModelPortal:O13759 IntAct:O13759 MINT:MINT-4667695
STRING:O13759 EnsemblFungi:SPAC17A2.09c.1 GeneID:2542151
KEGG:spo:SPAC17A2.09c OrthoDB:EOG44BFB8 NextBio:20803223
GO:GO:0070935 Uniprot:O13759
Length = 632
Score = 252 (93.8 bits), Expect = 5.1e-20, P = 5.1e-20
Identities = 77/302 (25%), Positives = 131/302 (43%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-----YAFLEFXXXXXXXXXX 63
TL++G+L+ + + L++ + KV+R + Y F++F
Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERAL 145
Query: 64 XXMNKRVF--LEKEMKVNWASSPGNQPKQDTSN--HYHIFVGDLSPEIETQTLKEAFAP- 118
N + K+NWA+ G Q S + IFVGDL P E L F
Sbjct: 146 MKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSI 205
Query: 119 FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPA 178
+ ++ +I+ DP T S+ Y FV F + E ++A+ M G R +R + ++ K A
Sbjct: 206 YPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVASPKSRA 265
Query: 179 MTNERKRQNSHTKTITFDEVYNQS----SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV 234
T T + NQ P N TV+ GG +L+E+ + F PFG I+
Sbjct: 266 SIAADSALGI-VPTSTSNRQPNQDLCSMDPLNTTVFVGGLASNLSEKDLQVCFQPFGRIL 324
Query: 235 DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTT 294
+I++ KG FV+++ K A AI ++ + ++ WG + S L+Q + +
Sbjct: 325 NIKIPFGKGCGFVQYSEKSAAEKAINTMQGALVGTSHIRLAWGHNTLPVSALSQSQSQVS 384
Query: 295 PQ 296
+
Sbjct: 385 DE 386
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 205 (77.2 bits), Expect = 6.7e-20, Sum P(3) = 6.7e-20
Identities = 53/186 (28%), Positives = 90/186 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L+ VTE +L +F+ +G V +V R+ YA++ +
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + ++ W+ + K T N IFV +L I+ + L + F+ FG I +C
Sbjct: 77 LNYTNIKGQPARLMWSHRDPSLRKSGTGN---IFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ D + KSK Y FV + + A+ AI +NG LGS+++ +K TN+ K
Sbjct: 134 KVATD-EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKF 192
Query: 186 QNSHTK 191
N + K
Sbjct: 193 TNLYVK 198
Score = 130 (50.8 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 44/187 (23%), Positives = 81/187 (43%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXXMN 67
++V NLD S+ + L FS G + CKV + G Y F+ + +N
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQT-LKEAFAPFGEISNCR 126
K + V + DT +++V + P+ T+T L++ F P+GEI++
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTK-FTNLYVKNF-PDSVTETHLRQLFNPYGEITSMI 223
Query: 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL-GSRSIRTNWSTRKPPAMTNERKR 185
+ D K++ + F+++ A+NA+ +NG+ + I + +K A +
Sbjct: 224 VKMDN---KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGA 280
Query: 186 QNSHTKT 192
N T T
Sbjct: 281 ANQTTGT 287
Score = 123 (48.4 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 24/93 (25%), Positives = 53/93 (56%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++++ +L I+ L+E F PFG I++ +++RD + +SKG+ FV F + EA A+T
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE-QSKGFGFVCFASQEEANKAVTE 509
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSH 189
M+ + + + + + ++ ++ ++R H
Sbjct: 510 MHLKIINGKPLYVGLAEKREQRLSRLQQRFRMH 542
Score = 104 (41.7 bits), Expect = 6.7e-20, Sum P(3) = 6.7e-20
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 183 RKRQNSHTKTITFDE--VYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK 240
R R+++ K FD V N++ +Y +++ ++ ++F PFGTI +V +
Sbjct: 425 RARRHAILKA-KFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMR 483
Query: 241 E-----KGYAFVKFTTKETATHAIESIHNTDING 269
+ KG+ FV F ++E A A+ +H ING
Sbjct: 484 DEKEQSKGFGFVCFASQEEANKAVTEMHLKIING 517
Score = 73 (30.8 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 22/100 (22%), Positives = 50/100 (50%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---KEKGYAFVKFTTKETAT 256
N + TN +Y F + E + ++F+P+G I + V K + + F+ + E+A
Sbjct: 188 NDTKFTN--LYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADAESAK 245
Query: 257 HAIESIHNTDI--NGHTVKCFWGKESENNSTLAQPSAPTT 294
+A+++++ I +G + + K+ E ++ + + TT
Sbjct: 246 NAMDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTT 285
Score = 64 (27.6 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXX 62
++++ T LYV N SVTE L LF+ G + V + N + F+ +
Sbjct: 188 NDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADAESAKNA 247
Query: 63 XXXMN-KRV 70
+N K++
Sbjct: 248 MDNLNGKKI 256
Score = 37 (18.1 bits), Expect = 6.7e-20, Sum P(3) = 6.7e-20
Identities = 11/27 (40%), Positives = 11/27 (40%)
Query: 363 QPTAQQMAVAQAQPSMMAAYAMQQFPT 389
Q AQQ AV Q AA F T
Sbjct: 594 QQAAQQQAVHQQAVHQQAAQQQLNFNT 620
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 205 (77.2 bits), Expect = 6.7e-20, Sum P(3) = 6.7e-20
Identities = 53/186 (28%), Positives = 90/186 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L+ VTE +L +F+ +G V +V R+ YA++ +
Sbjct: 17 SLYVGDLNEDVTEAVLYEIFNTVGHVSSIRVCRDSVTRKSLGYAYVNYHNLADAERALDT 76
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + ++ W+ + K T N IFV +L I+ + L + F+ FG I +C
Sbjct: 77 LNYTNIKGQPARLMWSHRDPSLRKSGTGN---IFVKNLDKSIDNKALFDTFSMFGNILSC 133
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ D + KSK Y FV + + A+ AI +NG LGS+++ +K TN+ K
Sbjct: 134 KVATD-EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKF 192
Query: 186 QNSHTK 191
N + K
Sbjct: 193 TNLYVK 198
Score = 130 (50.8 bits), Expect = 6.6e-11, Sum P(3) = 6.6e-11
Identities = 44/187 (23%), Positives = 81/187 (43%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXXMN 67
++V NLD S+ + L FS G + CKV + G Y F+ + +N
Sbjct: 106 IFVKNLDKSIDNKALFDTFSMFGNILSCKVATDEFGKSKSYGFVHYEDEESAKEAIEKVN 165
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQT-LKEAFAPFGEISNCR 126
K + V + DT +++V + P+ T+T L++ F P+GEI++
Sbjct: 166 GVQLGSKNVYVGPFIKKSERATNDTK-FTNLYVKNF-PDSVTETHLRQLFNPYGEITSMI 223
Query: 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL-GSRSIRTNWSTRKPPAMTNERKR 185
+ D K++ + F+++ A+NA+ +NG+ + I + +K A +
Sbjct: 224 VKMDN---KNRKFCFINYADAESAKNAMDNLNGKKITDDGQIDETYDPKKEEATASTSGA 280
Query: 186 QNSHTKT 192
N T T
Sbjct: 281 ANQTTGT 287
Score = 123 (48.4 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 24/93 (25%), Positives = 53/93 (56%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++++ +L I+ L+E F PFG I++ +++RD + +SKG+ FV F + EA A+T
Sbjct: 451 NLYIKNLDDGIDDIMLRELFEPFGTITSAKVMRDEKE-QSKGFGFVCFASQEEANKAVTE 509
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSH 189
M+ + + + + + ++ ++ ++R H
Sbjct: 510 MHLKIINGKPLYVGLAEKREQRLSRLQQRFRMH 542
Score = 104 (41.7 bits), Expect = 6.7e-20, Sum P(3) = 6.7e-20
Identities = 27/94 (28%), Positives = 48/94 (51%)
Query: 183 RKRQNSHTKTITFDE--VYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK 240
R R+++ K FD V N++ +Y +++ ++ ++F PFGTI +V +
Sbjct: 425 RARRHAILKA-KFDNLNVENKNKHQGVNLYIKNLDDGIDDIMLRELFEPFGTITSAKVMR 483
Query: 241 E-----KGYAFVKFTTKETATHAIESIHNTDING 269
+ KG+ FV F ++E A A+ +H ING
Sbjct: 484 DEKEQSKGFGFVCFASQEEANKAVTEMHLKIING 517
Score = 73 (30.8 bits), Expect = 1.0e-16, Sum P(3) = 1.0e-16
Identities = 22/100 (22%), Positives = 50/100 (50%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---KEKGYAFVKFTTKETAT 256
N + TN +Y F + E + ++F+P+G I + V K + + F+ + E+A
Sbjct: 188 NDTKFTN--LYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADAESAK 245
Query: 257 HAIESIHNTDI--NGHTVKCFWGKESENNSTLAQPSAPTT 294
+A+++++ I +G + + K+ E ++ + + TT
Sbjct: 246 NAMDNLNGKKITDDGQIDETYDPKKEEATASTSGAANQTT 285
Score = 64 (27.6 bits), Expect = 4.2e-06, Sum P(3) = 4.2e-06
Identities = 18/69 (26%), Positives = 31/69 (44%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXX 62
++++ T LYV N SVTE L LF+ G + V + N + F+ +
Sbjct: 188 NDTKFTNLYVKNFPDSVTETHLRQLFNPYGEITSMIVKMDNKNRKFCFINYADAESAKNA 247
Query: 63 XXXMN-KRV 70
+N K++
Sbjct: 248 MDNLNGKKI 256
Score = 37 (18.1 bits), Expect = 6.7e-20, Sum P(3) = 6.7e-20
Identities = 11/27 (40%), Positives = 11/27 (40%)
Query: 363 QPTAQQMAVAQAQPSMMAAYAMQQFPT 389
Q AQQ AV Q AA F T
Sbjct: 594 QQAAQQQAVHQQAVHQQAAQQQLNFNT 620
>UNIPROTKB|E5RG67 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00974428
ProteinModelPortal:E5RG67 SMR:E5RG67 Ensembl:ENST00000477044
ArrayExpress:E5RG67 Bgee:E5RG67 Uniprot:E5RG67
Length = 161
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 47/93 (50%), Positives = 60/93 (64%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXX 61
++ P TLYVGNL VTE L+ LFSQIGP K CK+I + GNDPY F+EF
Sbjct: 2 EDEMPKTLYVGNLSRDVTEALILQLFSQIGPCKNCKMIMDTAGNDPYCFVEFHEHRHAAA 61
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSN 94
MN R + KE+KVNWA++P +Q K+DTS+
Sbjct: 62 ALAAMNGRKIMGKEVKVNWATTPSSQ-KKDTSS 93
Score = 125 (49.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 28/97 (28%), Positives = 53/97 (54%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG+LS ++ + + F+ G NC+++ D T + Y FV F + A A+ AM
Sbjct: 9 LYVGNLSRDVTEALILQLFSQIGPCKNCKMIMD--TAGNDPYCFVEFHEHRHAAAALAAM 66
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
NG+ + + ++ NW+T P ++++K +S T T
Sbjct: 67 NGRKIMGKEVKVNWATT-P---SSQKKDTSSSTVVST 99
>UNIPROTKB|Q6GLB5 [details] [associations]
symbol:elavl1 "ELAV-like protein 1" species:8364 "Xenopus
(Silurana) tropicalis" [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISS] [GO:0005938 "cell cortex" evidence=ISS]
[GO:0007369 "gastrulation" evidence=ISS] [GO:0008266 "poly(U) RNA
binding" evidence=ISS] [GO:0008298 "intracellular mRNA
localization" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0048255 "mRNA stabilization" evidence=ISS]
[GO:0051259 "protein oligomerization" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0005634 GO:GO:0008266
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 GO:GO:0007369 eggNOG:COG0724
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:BC074585
RefSeq:NP_001005461.1 UniGene:Str.2596 ProteinModelPortal:Q6GLB5
SMR:Q6GLB5 STRING:Q6GLB5 PRIDE:Q6GLB5 GeneID:448062 KEGG:xtr:448062
Xenbase:XB-GENE-481800 InParanoid:Q6GLB5 Uniprot:Q6GLB5
Length = 326
Score = 185 (70.2 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 49/163 (30%), Positives = 84/163 (51%)
Query: 1 MC-DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXX 56
+C D+ T L V L ++T++ L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNA 71
Query: 57 XXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF 116
+N K +KV+ A +P ++ ++++ L + + +++ F
Sbjct: 72 KDAERAINTLNGLRLQSKTIKVSVA-----RPSSESIKDANLYISGLPRTMTQKDVEDMF 126
Query: 117 APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
PFG I N R++ D T S+G AF+ F K++EAE AI + NG
Sbjct: 127 LPFGRIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
Score = 144 (55.7 bits), Expect = 2.4e-07, P = 2.4e-07
Identities = 33/101 (32%), Positives = 55/101 (54%)
Query: 76 MKVNWASS-PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL 134
M V+ SS G S+ + IF+ +L + + L + F PFG ++N +++RD T
Sbjct: 223 MGVDHMSSISGVNVASSASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTN 282
Query: 135 KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
K KG+ FV+ EA AI ++NG LG ++++ + T K
Sbjct: 283 KCKGFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVFFKTSK 323
Score = 115 (45.5 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 27/115 (23%), Positives = 56/115 (48%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++ V L + L+ F+ GE+ + +++RD S GY FV+++ +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKD 73
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSP 204
AE AI +NG L S++I+ + + ++ + + +T+T +V + P
Sbjct: 74 AERAINTLNGLRLQSKTIKVSVARPSSESIKDANLYISGLPRTMTQKDVEDMFLP 128
Score = 108 (43.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 27/101 (26%), Positives = 55/101 (54%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H +I+ V + +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 227 HMSSISGVNVASSASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283
G+ FV T E A AI S++ + T++ F+ K S+++
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKTLQVFF-KTSKSH 325
>UNIPROTKB|D3K5N7 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1" species:9823 "Sus scrofa" [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0019901
"protein kinase binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727
GO:GO:0070935 CTD:1994 KO:K13088 OrthoDB:EOG4Z8XWZ
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:CU929699 EMBL:GU373715 RefSeq:NP_001182263.1 UniGene:Ssc.4516
ProteinModelPortal:D3K5N7 Ensembl:ENSSSCT00000014844
GeneID:100337681 KEGG:ssc:100337681 Uniprot:D3K5N7
Length = 326
Score = 198 (74.8 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 49/160 (30%), Positives = 84/160 (52%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+ T L V L ++T+E L +LFS IG ++ K+IR+ G+ Y F+ +
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A +P + ++++ L + + +++ F+PF
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSPF 129
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
G I N R++ D T S+G AF+ F K++EAE AIT+ NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
PGN S+ + IF+ +L + + L + F PFG ++N +++RD T K KG+ FV+
Sbjct: 237 PGN-----ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG + ++ ++ T K
Sbjct: 292 MTNYEEASMAIASLNGYRLGDKILQVSFKTNK 323
Score = 130 (50.8 bits), Expect = 3.3e-11, Sum P(2) = 3.3e-11
Identities = 30/115 (26%), Positives = 58/115 (50%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++ V L + + L+ F+ GEI + +++RD S GY FV++V +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEIESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSP 204
AE AI +NG L S++I+ +++ + + + +T+T +V + SP
Sbjct: 74 AERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFSP 128
Score = 91 (37.1 bits), Expect = 9.3e-20, Sum P(2) = 9.3e-20
Identities = 22/81 (27%), Positives = 43/81 (53%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H ++ V +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 227 HMSGLSGVNVPGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A+ AI S++
Sbjct: 286 GFGFVTMTNYEEASMAIASLN 306
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 249 (92.7 bits), Expect = 2.2e-19, P = 2.2e-19
Identities = 70/271 (25%), Positives = 127/271 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ LK+ F+ +G +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDDKLKDIFSKYGNAMSI 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
R++ D + KS+G+ FVSF + +A+ A+ MNG+ + + I + +K T E KR
Sbjct: 221 RVMTD-ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----KE 241
+ K D + +Y +++E + K FSPFGTI +V +
Sbjct: 279 KFEQMKQ---DRMTRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMDGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 220 (82.5 bits), Expect = 1.7e-15, P = 1.7e-15
Identities = 73/274 (26%), Positives = 122/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS G + +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHQDVTEAMLYEKFSPAGAILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V + +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKPPAM 179
I +C++V D SKGY FV F + AE AI MNG L R + + +RK
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRK---- 177
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGT-IVDIRV 238
ER+ + + F VY ++ + D +++ SK + ++
Sbjct: 178 --EREAELG-ARAKEFTNVYIKN-------FGEDMDDDKLKDIFSKYGNAMSIRVMTDEN 227
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K +G+ FV F E A A++ ++ ++NG +
Sbjct: 228 GKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLI 261
Score = 154 (59.3 bits), Expect = 6.2e-08, P = 6.2e-08
Identities = 52/215 (24%), Positives = 100/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + ++ L +FS+ G +V+ E G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDDKLKDIFSKYGNAMSIRVMTDENGKSRGFGFVSFERHEDAQRAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKEMNGKLIYVGRAQKKVERQTELKRKFEQMKQDRMTRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ D +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPFGTITSAKVMMDGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 369 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 402
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 245 (91.3 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 71/271 (26%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NL+ S+ + L FS G + CKV+ E G+ + F+ F MN
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDEHGSRGFGFVHFETHEAAQNAISTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + +I+V +L +++ Q L++ F+ FG++ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQRLQDLFSQFGKMLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD S+G+ FV+F K EA+ A+ MNG+ + R + +K NE KR
Sbjct: 221 KVMRDDSG-HSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVG-RAQKRVERQNELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSP+G I +V E
Sbjct: 279 RFEQMKQ---DRLTRYQG---VNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 210 (79.0 bits), Expect = 3.5e-14, Sum P(2) = 3.5e-14
Identities = 71/268 (26%), Positives = 125/268 (46%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V + +++ W+ PG + K N IF+ +L I+ + L + F+ FG I +
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLR-KSGVGN---IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D S+G+ FV F A+NAI+ MNG L R + ++ +R+ ER
Sbjct: 128 CKVVCDEHG--SRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRR------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK--E 241
+ + + + F +Y + N V + ++L S+ F ++ +R
Sbjct: 180 EVELG-ARAMEFTNIYVK----NLHV---DVDEQRLQDLFSQ-FGKMLSVKVMRDDSGHS 230
Query: 242 KGYAFVKFTTKETATHAIESIHNTDING 269
+G+ FV F E A A+ +++ +++G
Sbjct: 231 RGFGFVNFEKHEEAQKAVVNMNGREVSG 258
Score = 180 (68.4 bits), Expect = 1.5e-10, Sum P(2) = 1.5e-10
Identities = 53/183 (28%), Positives = 88/183 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +YV NL V V E+ L LFSQ G + KV+R+ + F+ F
Sbjct: 191 TNIYVKNLHVDVDEQRLQDLFSQFGKMLSVKVMRDDSGHSRGFGFVNFEKHEEAQKAVVN 250
Query: 66 MNKR------VFLEKEMK----VNWASSPGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN R +++ + K N Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGREVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+P+G I++ +++ + SKG+ FV F EA A+T MNG+ +G++ + +
Sbjct: 311 RKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 38 (18.4 bits), Expect = 2.8e-19, Sum P(2) = 2.8e-19
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 288 QPSA---PTTPQPNSTAPQF 304
QP++ P PQP + AP +
Sbjct: 402 QPASYFLPAVPQPPAQAPYY 421
>RGD|1566367 [details] [associations]
symbol:Pabpc1l2a "poly(A) binding protein, cytoplasmic 1-like
2A" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:1566367 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GeneTree:ENSGT00640000091232
IPI:IPI00769098 Ensembl:ENSRNOT00000029100 Uniprot:F1M8Y9
Length = 200
Score = 195 (73.7 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 49/162 (30%), Positives = 78/162 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ ++ R+ YA++ +
Sbjct: 3 SLYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALET 62
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V + +++ W+ + K N +F+ +L I+ + L F+ FG I +C
Sbjct: 63 MNFDVINGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSAFGNILSC 119
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
++ D + KGY FV F K+ AE AI A+NG +L R I
Sbjct: 120 KVACDEKG--PKGYGFVHFQKQESAERAIDALNGMFLNYRKI 159
Score = 161 (61.7 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL PE+ L E F+P G I + R+ RD T +S GYA+V++ + +A+ A+ M
Sbjct: 4 LYVGDLHPEVTESMLYEKFSPAGPILSIRLCRDKVTRRSLGYAYVNYQQPVDAKRALETM 63
Query: 158 NGQWLGSRSIRTNWSTRKP 176
N + R +R WS R P
Sbjct: 64 NFDVINGRPVRIMWSQRDP 82
Score = 94 (38.1 bits), Expect = 3.1e-19, Sum P(2) = 3.1e-19
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHN 264
V+ GK ++ + + +FS FG I+ +V + KGY FV F +E+A AI++++
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDALNG 151
Query: 265 TDINGHTVKCFWGKESENNSTLAQPSA 291
+N K F G+ + A+ A
Sbjct: 152 MFLNYR--KIFVGRFKSHKEREAERGA 176
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 243 (90.6 bits), Expect = 3.3e-19, P = 3.3e-19
Identities = 79/283 (27%), Positives = 122/283 (43%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP--YAFLEFXXXXXXXXXXXXM 66
LYVG+LD VTE++L F GP++ ++ R+P P Y ++ F M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCR 126
N + K ++ W+ K N IF+ +L I+ + L F+ FG I +C+
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGN---IFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ 186
+V D SKGYA+V F A A AI MNG L +R + + P E + +
Sbjct: 137 VVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG-RFKFPEERAAEVRTR 193
Query: 187 NSHTKTITFDEVY-NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYA 245
+ T T F + + N G+G E V + G K KG+
Sbjct: 194 DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPT---ESVKVIRDASG--------KSKGFG 242
Query: 246 FVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
FV++ T E A A+ +H ING + + G+ + LA+
Sbjct: 243 FVRYETHEAAQKAVLDLHGKSINGKVL--YVGRAQKKIERLAE 283
Score = 229 (85.7 bits), Expect = 3.0e-17, P = 3.0e-17
Identities = 66/272 (24%), Positives = 128/272 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ L LFS G + CKV+ + G+ YA++ F MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 69 RVFLEKEMKVNWASSPGNQPKQ----DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+++ V P + + D + ++FV + +++ + LKE F+ +G +
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTES 227
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+++RD KSKG+ FV + A+ A+ ++G+ + + + + +K + R+
Sbjct: 228 VKVIRDASG-KSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRR 286
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
R + + E +S P +Y + +++E + + FS FG+I +V E
Sbjct: 287 R----FERLRLKE---KSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQ 339
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ V F++ E AT A++ ++NG TV
Sbjct: 340 GKGFGVVCFSSFEDATKAVD-----EMNGRTV 366
Score = 116 (45.9 bits), Expect = 0.00048, P = 0.00048
Identities = 40/180 (22%), Positives = 76/180 (42%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXX 60
D + T ++V N + +E L +FS GP + KVIR+ + F+ +
Sbjct: 194 DRATFTNVFVKNFGNDMDDEKLKEIFSGYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQ-------------PKQDTSNHYHIFVGDLSPEI 107
++ + K + V A + ++ I++ +L I
Sbjct: 254 KAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ + LKE F+ FG IS +++ + + KG+ V F +A A+ MNG+ +GS+ +
Sbjct: 314 DDEKLKEEFSSFGSISRAKVM--VEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPL 371
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 240 (89.5 bits), Expect = 3.4e-19, P = 3.4e-19
Identities = 78/274 (28%), Positives = 120/274 (43%)
Query: 5 SQPT-TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFXXXXXXX 60
S PT +LYVG+L VTE +L FS GP+ ++ R+ G+ YA++ F
Sbjct: 7 SYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IFV +L I + L + + FG
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNKALYDTVSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C +V D SKGY FV F AE AI MNG L R + + +RK A
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ + F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 235 (87.8 bits), Expect = 2.1e-18, P = 2.1e-18
Identities = 70/257 (27%), Positives = 119/257 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
++V NLD S+ + L S G + C V+ E G+ Y F+ F MN
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ +++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKT--ITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-- 241
K IT +V N +Y +++E + K FSPFGTI +V E
Sbjct: 279 TFEQMKQDRITRYQVVN--------LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG 330
Query: 242 --KGYAFVKFTTKETAT 256
KG+ FV F++ E AT
Sbjct: 331 RSKGFGFVCFSSPEEAT 347
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 242 (90.2 bits), Expect = 4.5e-19, P = 4.5e-19
Identities = 82/284 (28%), Positives = 132/284 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP--YAFLEFXXXXXXXXXXXXM 66
LYVG+LD VTE++L F GP++ ++ R+P P Y ++ F M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCR 126
N + K ++ W S P ++ ++ S +IF+ +L I+ + L F+ FG I +C+
Sbjct: 80 NFDLINGKPFRLMW-SQPDDRLRK--SGIGNIFIKNLDKSIDNRALFYLFSAFGSILSCK 136
Query: 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ 186
+V D SKGYA+V F A A AI MNG L +R + K P ER +
Sbjct: 137 VVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG--RFKFP---EERAAE 189
Query: 187 NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF--KEKGY 244
TF V+ ++ + D +EL S+ + P ++ IR K KG+
Sbjct: 190 VRTRDKATFTNVFVKN-------FGDDMDDDKLKELFSE-YGPTESVKVIRDSSGKSKGF 241
Query: 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
FV++ T E A A+ +H I+G + + G+ + LA+
Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVL--YVGRAQKKIERLAE 283
Score = 224 (83.9 bits), Expect = 1.3e-16, P = 1.3e-16
Identities = 62/278 (22%), Positives = 128/278 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ L LFS G + CKV+ + G+ YA++ F MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGSILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 69 RVFLEKEMKVNWASSPGNQPKQ----DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+++ V P + + D + ++FV + +++ LKE F+ +G +
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDKATFTNVFVKNFGDDMDDDKLKELFSEYGPTES 227
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+++RD KSKG+ FV + A+ A+ ++G+ + + + + +K + R+
Sbjct: 228 VKVIRDSSG-KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR 286
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
R + + E +S P +Y + +++E + + FS FG+I +V E
Sbjct: 287 R----FERLRLKE---KSRPPGVPIYIKNLDETIDDEKLKEEFSSFGSISRAKVMVEVGQ 339
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
KG+ + F++ E AT A++ ++ + ++ G+
Sbjct: 340 GKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 40/181 (22%), Positives = 79/181 (43%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXX 60
D++ T ++V N + ++ L LFS+ GP + KVIR+ + F+ +
Sbjct: 194 DKATFTNVFVKNFGDDMDDDKLKELFSEYGPTESVKVIRDSSGKSKGFGFVRYETHEAAQ 253
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQ-------------PKQDTSNHYHIFVGDLSPEI 107
++ + K + V A + ++ I++ +L I
Sbjct: 254 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ + LKE F+ FG IS +++ + + KG+ + F EA A+ MNG+ +GS+ +
Sbjct: 314 DDEKLKEEFSSFGSISRAKVM--VEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPL 371
Query: 168 R 168
+
Sbjct: 372 Q 372
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 247 (92.0 bits), Expect = 4.8e-19, P = 4.8e-19
Identities = 75/273 (27%), Positives = 127/273 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
++V NLD S+ + L S G + C V+ E G+ Y F+ F MN
Sbjct: 101 IFVKNLDKSINNKALYDTVSAFGNILSCNVVCDENGSKGYGFVHFETHEAAERAIKKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ +++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNGRKVFVGQFKSRKEREAELGARAKEFPNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKT--ITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-- 241
K IT +V N +Y +++E + K FSPFGTI +V E
Sbjct: 279 TFEQMKQDRITRYQVVN--------LYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGG 330
Query: 242 --KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 331 RSKGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 240 (89.5 bits), Expect = 5.0e-18, P = 5.0e-18
Identities = 78/274 (28%), Positives = 120/274 (43%)
Query: 5 SQPT-TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFXXXXXXX 60
S PT +LYVG+L VTE +L FS GP+ ++ R+ G+ YA++ F
Sbjct: 7 SYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IFV +L I + L + + FG
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNKALYDTVSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C +V D SKGY FV F AE AI MNG L R + + +RK A
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ + F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 167 (63.8 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 52/202 (25%), Positives = 96/202 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXXMN 67
+Y+ N + +E L LF + GP KV+ E G + F+ F MN
Sbjct: 193 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDEMN 252
Query: 68 ------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHYHI---FVGDLSPEIETQTLKE 114
K++++ + + KV + Q KQD Y + +V +L I+ + L++
Sbjct: 253 GKELNGKQIYVGRAQKKVERQTELKRTFEQMKQDRITRYQVVNLYVKNLDDGIDDERLRK 312
Query: 115 AFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR 174
AF+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + + R
Sbjct: 313 AFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQR 370
Query: 175 KPPA---MTNERKRQNSHTKTI 193
K +TNE ++ + + +
Sbjct: 371 KEERQAYLTNEYMQRMASVRAV 392
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 247 (92.0 bits), Expect = 4.9e-19, P = 4.9e-19
Identities = 71/271 (26%), Positives = 125/271 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + ++ + LKE F +G +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGKYGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D KSKG+ FVSF + +A+ A+ MNG+ + +S+ + +K T E KR
Sbjct: 221 KVMTDDNG-KSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K F PFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFLPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 238 (88.8 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 80/274 (29%), Positives = 121/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHQDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V + +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGRPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKPPAM 179
I +C++V D SKGY FV F + AE AI MNG L R + + +RK
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRK---- 177
Query: 180 TNERKRQ-NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
ER+ + + K T + N N FGK L KV +
Sbjct: 178 --EREAELGARAKEFTNVYIKNFGDDMNDERLKEMFGK-YGPALSVKVMTDDNG------ 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ D+NG ++
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSM 261
Score = 155 (59.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 47/183 (25%), Positives = 85/183 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L +F + GP KV+ + + F+ F
Sbjct: 191 TNVYIKNFGDDMNDERLKEMFGKYGPALSVKVMTDDNGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKDMNGKSMFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFLPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 38 (18.4 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 8/31 (25%), Positives = 14/31 (45%)
Query: 175 KPPAMTNERKRQNSHTKTITFDEVYNQSSPT 205
+PP + R N + ++ V N S+ T
Sbjct: 458 RPPTFSTMRPASNQVPRVMSAQRVANTSTQT 488
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 244 (91.0 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 70/271 (25%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGDILSCKVVCDEYGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F+ FG +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLKEIFSAFGNTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D + +S+G+ FV++ EA+ A+T MNG+ + R + +K E KR
Sbjct: 221 KVMMD-NSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVG-RAQKRIERQGELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E N+ N +Y ++++ + K FSP+GTI +V E
Sbjct: 279 KFEQIK----QERINRYQGVN--LYVKNLDDGIDDDRLRKEFSPYGTITSTKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 219 (82.2 bits), Expect = 2.6e-15, Sum P(2) = 2.6e-15
Identities = 71/270 (26%), Positives = 123/270 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LY+G+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V + +++ W+ PG + K N +F+ +L I+ + L + F+ FG+I +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLR-KSGVGN---VFIKNLDDSIDNKALYDTFSAFGDILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D S+GY FV F + A AI MNG L R + ++ +R+ ER
Sbjct: 128 CKVVCDEYG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKEK 242
+ + K + F VY ++ + K L +E+ S + V + + +
Sbjct: 180 ELEYG-AKVMEFTNVYIKNFGEDMD------DKRL-KEIFSAFGNTLSVKVMMDNSGRSR 231
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTV 272
G+ FV + E A A+ ++ ++NG V
Sbjct: 232 GFGFVNYGNHEEAQKAVTEMNGKEVNGRMV 261
Score = 130 (50.8 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 43/183 (23%), Positives = 82/183 (44%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + ++ L +FS G KV+ + G + F+ +
Sbjct: 191 TNVYIKNFGEDMDDKRLKEIFSAFGNTLSVKVMMDNSGRSRGFGFVNYGNHEEAQKAVTE 250
Query: 66 MN------KRVFLEKEMK----VNWASSPGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + V++ + K Q KQ+ N Y +++V +L I+ L
Sbjct: 251 MNGKEVNGRMVYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+P+G I++ +++ + SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPYGTITSTKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 38 (18.4 bits), Expect = 5.2e-19, Sum P(2) = 5.2e-19
Identities = 9/21 (42%), Positives = 10/21 (47%)
Query: 285 TLAQPSAPTTPQPNSTAPQFP 305
T+ QPS PN AP P
Sbjct: 410 TMPQPSNRAFYSPNPVAPVRP 430
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 246 (91.7 bits), Expect = 6.8e-19, P = 6.8e-19
Identities = 71/271 (26%), Positives = 129/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ + F+ F MN
Sbjct: 101 VFIKNLDDSIDNKALYDTFSAFGNILSCKVVCDENGSRGHGFVHFETQEAATRAIQTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ L+E F+ FG+ +
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEFGARAMEFTNVYIKNFGDDMDDNRLREIFSRFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D T +SKG+ FV+F K EA+ A+ MNG+ + R + +K +E KR
Sbjct: 221 KVMMD-HTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVG-RAQKRLERQSELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E ++ N +Y +++E + K FSP+GTI +V E
Sbjct: 279 KFEQMK----QERVSRYQGVN--LYVKNLDDGIDDERLRKEFSPYGTITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 223 (83.6 bits), Expect = 7.3e-16, P = 7.3e-16
Identities = 72/270 (26%), Positives = 121/270 (44%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVASRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V + +++ W+ PG + K N +F+ +L I+ + L + F+ FG I +
Sbjct: 72 MNFEVIKGRPVRIMWSQRDPGLR-KSGVGN---VFIKNLDDSIDNKALYDTFSAFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D S+G+ FV F + A AI MNG L R + ++ +RK ER
Sbjct: 128 CKVVCDENG--SRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRK------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKEK 242
+ + + + F VY ++ + + E+ S+ V + + K
Sbjct: 180 EAEFG-ARAMEFTNVYIKN-------FGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSK 231
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTV 272
G+ FV F E A A+ ++ +ING V
Sbjct: 232 GFGFVNFEKHEEAQKAVADMNGKEINGRMV 261
Score = 135 (52.6 bits), Expect = 8.0e-06, P = 8.0e-06
Identities = 44/183 (24%), Positives = 84/183 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + + L +FS+ G KV+ + G + F+ F
Sbjct: 191 TNVYIKNFGDDMDDNRLREIFSRFGKTLSVKVMMDHTGRSKGFGFVNFEKHEEAQKAVAD 250
Query: 66 MN------KRVFLEKEMKVNWASSP----GNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + V++ + K S Q KQ+ + Y +++V +L I+ + L
Sbjct: 251 MNGKEINGRMVYVGRAQKRLERQSELKRKFEQMKQERVSRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+P+G I++ +++ + SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
>MGI|MGI:1100851 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision)-like
1 (Hu antigen R)" species:10090 "Mus musculus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISO]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO;IDA] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0006417 "regulation of translation" evidence=ISO] [GO:0017091
"AU-rich element binding" evidence=ISO] [GO:0019901 "protein kinase
binding" evidence=ISO] [GO:0035925 "mRNA 3'-UTR AU-rich region
binding" evidence=ISO] [GO:0045727 "positive regulation of
translation" evidence=ISO;IMP;IDA] [GO:0048255 "mRNA stabilization"
evidence=ISO;IMP] [GO:0070935 "3'-UTR-mediated mRNA stabilization"
evidence=ISO] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1100851 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
GO:GO:0045727 EMBL:CH466566 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 EMBL:U65735 EMBL:AK080365
EMBL:U17595 IPI:IPI00108271 PIR:I49144 RefSeq:NP_034615.2
UniGene:Mm.119162 HSSP:P26378 ProteinModelPortal:P70372 SMR:P70372
DIP:DIP-46480N MINT:MINT-4094207 STRING:P70372 PhosphoSite:P70372
PaxDb:P70372 PRIDE:P70372 Ensembl:ENSMUST00000098950 GeneID:15568
KEGG:mmu:15568 GeneTree:ENSGT00560000077064 InParanoid:P70372
OMA:YANRACA ChiTaRS:ELAVL1 NextBio:288542 Bgee:P70372
Genevestigator:P70372 GermOnline:ENSMUSG00000040028 Uniprot:P70372
Length = 326
Score = 191 (72.3 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 49/160 (30%), Positives = 83/160 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+ T L V L ++T+E L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A +P + ++++ L + + +++ F+ F
Sbjct: 75 ERAISTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRF 129
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
G I N R++ D T S+G AF+ F K++EAE AIT+ NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 78 VNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSK 137
++ + PGN S+ + IF+ +L + + L + F PFG ++N +++RD T K K
Sbjct: 231 ISGVNVPGN-----ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 138 GYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G+ FV+ EA AI ++NG LG + ++ ++ T K
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 123 (48.4 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 28/114 (24%), Positives = 58/114 (50%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++ V L + + L+ F+ GE+ + +++RD S GY FV++V +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSS 203
AE AI+ +NG L S++I+ +++ + + + +T+T +V + S
Sbjct: 74 AERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFS 127
Score = 92 (37.4 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H I+ V +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 227 HMSGISGVNVPGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A AI S++
Sbjct: 286 GFGFVTMTNYEEAAMAIASLN 306
>RGD|1308649 [details] [associations]
symbol:Elavl1 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=ISO] [GO:0017091 "AU-rich element binding"
evidence=ISO] [GO:0019901 "protein kinase binding" evidence=ISO]
[GO:0035925 "mRNA 3'-UTR AU-rich region binding" evidence=ISO]
[GO:0045727 "positive regulation of translation" evidence=IEA;ISO]
[GO:0048255 "mRNA stabilization" evidence=ISO] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1308649 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003730 eggNOG:COG0724 HOVERGEN:HBG002295 CTD:1994
HOGENOM:HOG000231162 KO:K13088 OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:CH474084
EMBL:BC168972 EMBL:AB212679 IPI:IPI00869767 RefSeq:NP_001102318.1
UniGene:Rn.216517 SMR:B5DF91 STRING:B5DF91
Ensembl:ENSRNOT00000001415 GeneID:363854 KEGG:rno:363854
UCSC:RGD:1308649 NextBio:684342 Genevestigator:B5DF91
Uniprot:B5DF91
Length = 326
Score = 191 (72.3 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 49/160 (30%), Positives = 83/160 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+ T L V L ++T+E L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 15 DDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A +P + ++++ L + + +++ F+ F
Sbjct: 75 ERAISTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRF 129
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
G I N R++ D T S+G AF+ F K++EAE AIT+ NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 146 (56.5 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 31/98 (31%), Positives = 55/98 (56%)
Query: 78 VNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSK 137
++ + PGN S+ + IF+ +L + + L + F PFG ++N +++RD T K K
Sbjct: 231 ISGVNVPGN-----ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 138 GYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G+ FV+ EA AI ++NG LG + ++ ++ T K
Sbjct: 286 GFGFVTMTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 123 (48.4 bits), Expect = 1.8e-10, Sum P(2) = 1.8e-10
Identities = 28/114 (24%), Positives = 58/114 (50%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++ V L + + L+ F+ GE+ + +++RD S GY FV++V +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQEELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSS 203
AE AI+ +NG L S++I+ +++ + + + +T+T +V + S
Sbjct: 74 AERAISTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFS 127
Score = 92 (37.4 bits), Expect = 6.9e-19, Sum P(2) = 6.9e-19
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H I+ V +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 227 HMSGISGVNVPGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A AI S++
Sbjct: 286 GFGFVTMTNYEEAAMAIASLN 306
>UNIPROTKB|H3BPI5 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL359757 HGNC:HGNC:8556 ProteinModelPortal:H3BPI5 SMR:H3BPI5
Ensembl:ENST00000562709 Bgee:H3BPI5 Uniprot:H3BPI5
Length = 255
Score = 225 (84.3 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 76/268 (28%), Positives = 116/268 (43%)
Query: 5 SQPT-TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFXXXXXXX 60
S PT +LYVG+L VTE +L FS GP+ ++ R+ G+ YA++ F
Sbjct: 7 SYPTASLYVGDLHPDVTEAMLYEKFSPAGPILSIRICRDLITSGSSNYAYVNFQHTKDAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IFV +L I + L + + FG
Sbjct: 67 HALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFVKNLDKSINNKALYDTVSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C +V D SKGY FV F AE AI MNG L R + + +RK A
Sbjct: 124 NILSCNVVCDENG--SKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ + F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFPNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTD 266
K KG+ FV F E A A++ ++ +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKE 255
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 239 (89.2 bits), Expect = 1.3e-18, P = 1.3e-18
Identities = 81/284 (28%), Positives = 128/284 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP--YAFLEFXXXXXXXXXXXXM 66
LYVG+LD VTE++L F GP++ ++ R+P P Y ++ F M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCR 126
N + K ++ W+ + K N IF+ +L I+ + L F+ FG I +C+
Sbjct: 80 NFDLINGKPFRLMWSQPDDHLRKSGVGN---IFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ 186
+V D SKGYA+V F A A AI MNG L +R + K P ER +
Sbjct: 137 VVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG--RFKFP---EERAAE 189
Query: 187 NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR--VFKEKGY 244
TF V+ ++ + + ++L S+ + P ++ IR K KG+
Sbjct: 190 VRTRDRATFTNVFVKN-------FGDDIDDEKLKKLFSE-YGPTESVKVIRDATGKSKGF 241
Query: 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
FV++ T E A A+ +H I+G V C G+ + LA+
Sbjct: 242 GFVRYETHEAAQKAVLELHGKSIDGK-VLCV-GRAQKKIERLAE 283
Score = 227 (85.0 bits), Expect = 5.5e-17, P = 5.5e-17
Identities = 64/278 (23%), Positives = 130/278 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ L LFS G + CKV+ + G+ YA++ F MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 69 RVFLEKEMKVNWASSPGNQPKQ----DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+++ V P + + D + ++FV + +I+ + LK+ F+ +G +
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTES 227
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+++RD T KSKG+ FV + A+ A+ ++G+ + + + + +K + E +
Sbjct: 228 VKVIRDA-TGKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLA-ELR 285
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
R+ K + +++ P +Y + +N+E + + FS FG+I +V E
Sbjct: 286 RRFERLK------LKDKTRPPGVPIYIKNLDETINDEKLKEEFSLFGSISRAKVMMEVGQ 339
Query: 242 -KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
KG+ V F++ E A+ A+ ++ + T+ G+
Sbjct: 340 GKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
Score = 125 (49.1 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 44/180 (24%), Positives = 79/180 (43%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXX 60
D + T ++V N + +E L LFS+ GP + KVIR+ G + F+ +
Sbjct: 194 DRATFTNVFVKNFGDDIDDEKLKKLFSEYGPTESVKVIRDATGKSKGFGFVRYETHEAAQ 253
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQ-----------DTSNH--YHIFVGDLSPEI 107
++ + K + V A + + D + I++ +L I
Sbjct: 254 KAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRFERLKLKDKTRPPGVPIYIKNLDETI 313
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ LKE F+ FG IS +++ + + KG+ V F EA A+ MNG+ +GS+++
Sbjct: 314 NDEKLKEEFSLFGSISRAKVMMEVG--QGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTL 371
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 244 (91.0 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 70/271 (25%), Positives = 127/271 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIDKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LKE F +G +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKEWFGQYGAALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D KS+G+ FVSF + +A+ A+ MNG+ L ++I + +K T E KR
Sbjct: 221 KVMTDDHG-KSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K F+PFG+I +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFTPFGSITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 239 (89.2 bits), Expect = 7.1e-18, P = 7.1e-18
Identities = 76/274 (27%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + + G +G L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDE---RLKEWFGQYGAALSVKVMT---DDHG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K +G+ FV F E A A++ ++ D+NG +
Sbjct: 229 -KSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAI 261
Score = 150 (57.9 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 48/183 (26%), Positives = 84/183 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L F Q G KV+ + G + F+ F
Sbjct: 191 TNVYIKNFGEDMDDERLKEWFGQYGAALSVKVMTDDHGKSRGFGFVSFERHEDAQKAVDD 250
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K +F+ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKDLNGKAIFVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFTPFGSITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
>UNIPROTKB|G3MZ94 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 OMA:DSANKVY GeneID:521086
KEGG:bta:521086 EMBL:DAAA02072607 RefSeq:XP_003588203.1
Ensembl:ENSBTAT00000064260 Uniprot:G3MZ94
Length = 200
Score = 197 (74.4 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 49/162 (30%), Positives = 79/162 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ ++ R+ + YA++ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N V + +++ W+ + K N +F+ +L I+ + L F+ FG I +C
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSAFGNILSC 119
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
++ D + KGY FV F K+ AE AI AMNG +L R I
Sbjct: 120 KVACDEKG--PKGYGFVHFQKQESAERAIDAMNGMFLNYRKI 159
Score = 156 (60.0 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL PE+ L E F+P G I + RI RD T +S GYA+V++ + +A+ A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 158 NGQWLGSRSIRTNWSTRKP 176
N + R +R WS R P
Sbjct: 64 NFDVIKGRPVRIMWSQRDP 82
Score = 93 (37.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHN 264
V+ GK ++ + + +FS FG I+ +V + KGY FV F +E+A AI++++
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
Query: 265 TDINGHTVKCFWGKESENNSTLAQPSA 291
+N K F G+ + A+ A
Sbjct: 152 MFLNYR--KIFVGRFKSHKEREAERGA 176
>UNIPROTKB|F1RPL9 [details] [associations]
symbol:LOC100623240 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 EMBL:FP236342 RefSeq:XP_003135232.1
RefSeq:XP_003360416.1 Ensembl:ENSSSCT00000023519
Ensembl:ENSSSCT00000025081 GeneID:100525442 GeneID:100623240
KEGG:ssc:100525442 KEGG:ssc:100623240 OMA:DSANKVY Uniprot:F1RPL9
Length = 200
Score = 197 (74.4 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 49/162 (30%), Positives = 79/162 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ ++ R+ + YA++ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N V + +++ W+ + K N +F+ +L I+ + L F+ FG I +C
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSAFGNILSC 119
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
++ D + KGY FV F K+ AE AI AMNG +L R I
Sbjct: 120 KVACDEKG--PKGYGFVHFQKQESAERAIDAMNGMFLNYRKI 159
Score = 156 (60.0 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL PE+ L E F+P G I + RI RD T +S GYA+V++ + +A+ A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 158 NGQWLGSRSIRTNWSTRKP 176
N + R +R WS R P
Sbjct: 64 NFDVIKGRPVRIMWSQRDP 82
Score = 93 (37.8 bits), Expect = 1.4e-18, Sum P(2) = 1.4e-18
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHN 264
V+ GK ++ + + +FS FG I+ +V + KGY FV F +E+A AI++++
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
Query: 265 TDINGHTVKCFWGKESENNSTLAQPSA 291
+N K F G+ + A+ A
Sbjct: 152 MFLNYR--KIFVGRFKSHKEREAERGA 176
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 244 (91.0 bits), Expect = 1.5e-18, P = 1.5e-18
Identities = 82/285 (28%), Positives = 124/285 (43%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+LYVG+L V E +L FS GPV +V R+ + M+
Sbjct: 33 SLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLSLGYAYVNFQQPADAERAMDT 92
Query: 69 RVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIV 128
F K P S +IF+ +L I+ +++ + F+ FG I +C++
Sbjct: 93 MNFEALHGKPMRIMWSQRDPAMRRSGAGNIFIKNLDKVIDNKSIYDTFSLFGNILSCKVA 152
Query: 129 RDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNS 188
D SKGY FV F + A+NAI +NG L + + +P A +R R+
Sbjct: 153 IDEDGF-SKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVG--KFQPRA---QRNRELG 206
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----KEKGY 244
T F TN VY FG N+E + K+F+ FG I V K KG+
Sbjct: 207 ETAK-QF---------TN--VYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGF 254
Query: 245 AFVKFTTKETATHAIESIHNTDINGHTVK---CFWGKESENNSTL 286
FV F E A A++++H++ I G +K C K+SE ++ L
Sbjct: 255 GFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 299
Score = 196 (74.1 bits), Expect = 1.1e-12, P = 1.1e-12
Identities = 62/266 (23%), Positives = 120/266 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKV-IREPG-NDPYAFLEFXXXXXXXXXXXXMN 67
+++ NLD + + + FS G + CKV I E G + Y F+ F +N
Sbjct: 122 IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFETEEAAQNAIQKVN 181
Query: 68 KRVFLEKEMKVN--WASSPGNQPKQDTSNHY-HIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ K++ V + N+ +T+ + +++V + +TL++ FA FG I++
Sbjct: 182 GMLLAGKKVFVGKFQPRAQRNRELGETAKQFTNVYVKNFGDHYNKETLEKLFAKFGNITS 241
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKPPAMTNER 183
C ++ KSKG+ FV+F EAE A+ A++ + ++ + +K E
Sbjct: 242 CEVMTVEG--KSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAEL 299
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
K+++ K E + N +Y + ++++ + K F +G I +V
Sbjct: 300 KKKHEQHKA----ERMQKYQGVN--LYVKNLDETVDDDGLKKQFESYGNITSAKVMTDEN 353
Query: 240 -KEKGYAFVKFTTKETATHAIESIHN 264
+ KG+ FV F E AT A+ +++
Sbjct: 354 GRSKGFGFVCFEKPEEATSAVTEMNS 379
Score = 160 (61.4 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 38/100 (38%), Positives = 58/100 (58%)
Query: 81 ASSPGNQPKQD-TSNHY---HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKS 136
A++P QP Q+ T + Y ++VGDL P++ L E F+ G + + R+ RD T S
Sbjct: 15 AAAP--QPGQNQTGSSYTMASLYVGDLHPDVNESILFEKFSAAGPVLSIRVCRDNATRLS 72
Query: 137 KGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176
GYA+V+F + A+AE A+ MN + L + +R WS R P
Sbjct: 73 LGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQRDP 112
Score = 137 (53.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 43/186 (23%), Positives = 83/186 (44%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFXXXXXXXXXXX 64
Q T +YV N +E L LF++ G + C+V+ G + F+ F
Sbjct: 211 QFTNVYVKNFGDHYNKETLEKLFAKFGNITSCEVMTVEGKSKGFGFVAFANPEEAETAVQ 270
Query: 65 XMNKRVFLEKEMKVNWASSPGN------------QPKQDTSNHY---HIFVGDLSPEIET 109
++ ++K++ + Q K + Y +++V +L ++
Sbjct: 271 ALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHEQHKAERMQKYQGVNLYVKNLDETVDD 330
Query: 110 QTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT 169
LK+ F +G I++ +++ D + +SKG+ FV F K EA +A+T MN + + S+ +
Sbjct: 331 DGLKKQFESYGNITSAKVMTD-ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYV 389
Query: 170 NWSTRK 175
+ RK
Sbjct: 390 AIAQRK 395
Score = 99 (39.9 bits), Expect = 1.8e-14, Sum P(2) = 1.8e-14
Identities = 35/123 (28%), Positives = 54/123 (43%)
Query: 196 DEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFVKFT 250
D +S N ++ K ++ + + FS FG I+ +V + KGY FV F
Sbjct: 111 DPAMRRSGAGN--IFIKNLDKVIDNKSIYDTFSLFGNILSCKVAIDEDGFSKGYGFVHFE 168
Query: 251 TKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNSTAPQFPYIYNQ 310
T+E A +AI+ ++ + G K F GK QP A + TA QF +Y +
Sbjct: 169 TEEAAQNAIQKVNGMLLAGK--KVFVGK--------FQPRAQRNRELGETAKQFTNVYVK 218
Query: 311 QMG 313
G
Sbjct: 219 NFG 221
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 243 (90.6 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 70/271 (25%), Positives = 128/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETQEAANRAIQTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + L+E F+ FG +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D T +S+G+ FV++ EA+ A++ MNG+ + R I +K E KR
Sbjct: 221 KVMMD-DTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG-RAQKRIERQGELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E N+ N +Y ++++ + K FSP+GTI +V E
Sbjct: 279 KFEQIK----QERINRYQGVN--LYVKNLDDGIDDDRLRKEFSPYGTITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 218 (81.8 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 71/270 (26%), Positives = 121/270 (44%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V + +++ W+ PG + K N +F+ +L I+ + L + F+ FG I +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLR-KSGVGN---VFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D S+GY FV F + A AI MNG L R + ++ +R+ ER
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRR------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR-VFKEK 242
+ + K + F VY ++ + K L E + S + V + + +
Sbjct: 180 ELEYG-AKVMEFTNVYIKNFGEDMD------DKRLRE-IFSAFGNTLSVKVMMDDTGRSR 231
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTV 272
G+ FV + E A A+ ++ ++NG +
Sbjct: 232 GFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Score = 130 (50.8 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 44/183 (24%), Positives = 82/183 (44%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + ++ L +FS G KV+ + G + F+ +
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDTGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 66 MNKRVFLEKEMKVNWASS----PGN------QPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + + + V A G Q KQ+ N Y +++V +L I+ L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQGELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+P+G I++ +++ + SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFSPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 242 (90.2 bits), Expect = 2.3e-18, P = 2.3e-18
Identities = 77/308 (25%), Positives = 138/308 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + LK+ F FG +
Sbjct: 161 MLLNDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR
Sbjct: 221 KVMTD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSPFGTI +V E
Sbjct: 279 KFEQMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG------KESENNSTLAQPS--APT 293
KG+ FV F+ + ++ ++ N IN + G +++N + PS A
Sbjct: 333 KGFGFVCFSYMQRMA-SVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQL 391
Query: 294 TPQPNSTA 301
P P TA
Sbjct: 392 RPSPRWTA 399
Score = 236 (88.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 77/274 (28%), Positives = 123/274 (44%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 7 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 66
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN V K +++ W+ + K N IF+ +L I+ + L + F+ FG
Sbjct: 67 RALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGN---IFIKNLDKSIDNKALYDTFSAFG 123
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKP-PA 178
I +C++V D SKGY FV F + AE AI MNG L R + + +RK A
Sbjct: 124 NILSCKVVCDENG--SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 181
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV 238
R ++ ++ F E + + G FG L+ ++++ G
Sbjct: 182 ELGARAKEFTNVYIKNFGEDMDDERLKDLF---GKFGPALSVKVMT---DESG------- 228
Query: 239 FKEKGYAFVKFTTKETATHAIESIHNTDINGHTV 272
K KG+ FV F E A A++ ++ ++NG +
Sbjct: 229 -KSKGFGFVSFERHEDAQKAVDEMNGKELNGKQI 261
Score = 37 (18.1 bits), Expect = 1.1e-17, Sum P(2) = 1.1e-17
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 423 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 470
>UNIPROTKB|G3MYW4 [details] [associations]
symbol:PABPC1L2A "Uncharacterized protein" species:9913
"Bos taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:340529 EMBL:DAAA02072604
RefSeq:XP_002700050.1 RefSeq:XP_003584787.1 RefSeq:XP_599343.3
ProteinModelPortal:G3MYW4 Ensembl:ENSBTAT00000066058 GeneID:521086
GeneID:784438 KEGG:bta:521086 KEGG:bta:784438 OMA:ILSIRLC
NextBio:20873237 Uniprot:G3MYW4
Length = 200
Score = 195 (73.7 bits), Expect = 3.9e-15, P = 3.9e-15
Identities = 49/162 (30%), Positives = 79/162 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ ++ R+ + YA++ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N V + +++ W+ + K N +F+ +L I+ + L F+ FG I +C
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSAFGNILSC 119
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
++ D + KGY FV F K+ AE AI AMNG +L R I
Sbjct: 120 KVACDEKG--PKGYGFVHFQKQESAERAIDAMNGMFLNYRKI 159
Score = 154 (59.3 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 30/79 (37%), Positives = 47/79 (59%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL PE+ L E F+P G I + R+ RD T +S GYA+V++ + +A+ A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRLCRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 158 NGQWLGSRSIRTNWSTRKP 176
N + R +R WS R P
Sbjct: 64 NFDVIKGRPVRIMWSQRDP 82
Score = 93 (37.8 bits), Expect = 2.4e-18, Sum P(2) = 2.4e-18
Identities = 25/87 (28%), Positives = 44/87 (50%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHN 264
V+ GK ++ + + +FS FG I+ +V + KGY FV F +E+A AI++++
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDAMNG 151
Query: 265 TDINGHTVKCFWGKESENNSTLAQPSA 291
+N K F G+ + A+ A
Sbjct: 152 MFLNYR--KIFVGRFKSHKEREAERGA 176
>CGD|CAL0004999 [details] [associations]
symbol:orf19.6790 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IEA] [GO:0061158 "3'-UTR-mediated mRNA destabilization"
evidence=IEA] [GO:0007005 "mitochondrion organization"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0004999 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000029 EMBL:AACQ01000028
RefSeq:XP_719769.1 RefSeq:XP_719886.1 ProteinModelPortal:Q5ADQ1
GeneID:3638443 GeneID:3638606 KEGG:cal:CaO19.14082
KEGG:cal:CaO19.6790 Uniprot:Q5ADQ1
Length = 887
Score = 151 (58.2 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 33/112 (29%), Positives = 54/112 (48%)
Query: 177 PAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI 236
P N+ + Q+ H + P N TV+ GG D++E + +F PFG I +
Sbjct: 492 PQYQNQLQLQHQHQHQ-HLQQGQQFVDPNNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQV 550
Query: 237 RVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
++ K FVK++ +E A AI ++ I G+ V+ WG+ S +N Q
Sbjct: 551 KIPPGKNCGFVKYSNREEAEEAIAAMQGFVIGGNRVRLSWGRVSVSNKKYQQ 602
Score = 141 (54.7 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 39/121 (32%), Positives = 58/121 (47%)
Query: 73 EKEMKVNWASSPG-NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-F-GEISNCRIVR 129
+K ++NWAS + P T Y +FVGDLS L F F I R++
Sbjct: 231 KKYFRLNWASGATLSAPIVQTPE-YSLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMT 289
Query: 130 DPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT-NERKRQNS 188
DP + KS+ + FV F +++E + A+ MNG W R +R +T + A N R+
Sbjct: 290 DPISGKSRCFGFVRFTEESERQRALIEMNGAWFAGRPLRVALATPRNVARRFNNRRFSPQ 349
Query: 189 H 189
H
Sbjct: 350 H 350
Score = 120 (47.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 32/110 (29%), Positives = 53/110 (48%)
Query: 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENA 153
N+ +FVG LS ++ TL F PFG I +I P K FV + + EAE A
Sbjct: 519 NNTTVFVGGLSSDVSEPTLHTLFKPFGLIQQVKI---PP---GKNCGFVKYSNREEAEEA 572
Query: 154 ITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSS 203
I AM G +G +R +W +++N++ +Q + ++ Q++
Sbjct: 573 IAAMQGFVIGGNRVRLSWGR---VSVSNKKYQQQQQQQVAQVAQLQVQAA 619
Score = 69 (29.3 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 24/93 (25%), Positives = 42/93 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP--VKGCKVIREP--GNDP-YAFLEFXXXXXXXXXX 63
+L+VG+L S TE L A F + P +K +V+ +P G + F+ F
Sbjct: 255 SLFVGDLSASTTEAHLLAFFQKNFPNSIKTVRVMTDPISGKSRCFGFVRFTEESERQRAL 314
Query: 64 XXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHY 96
MN F + ++V A+ P N ++ + +
Sbjct: 315 IEMNGAWFAGRPLRVALAT-PRNVARRFNNRRF 346
Score = 49 (22.3 bits), Expect = 2.7e-18, Sum P(3) = 2.7e-18
Identities = 25/100 (25%), Positives = 46/100 (46%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGC-KVIR----EPG-------NDPYAFL 51
+++P TL++G+LD + E + L+ I K K+I+ +P N Y F+
Sbjct: 134 DNKPRTLWMGDLDPWLDENAIQDLWWSILQKKVVVKIIKPKNMKPDINFQGLTNSGYCFV 193
Query: 52 EFXXXXXXXXXXXXMNKRVFLEKEM--KVNWASSPGNQPK 89
EF +N ++ + M + N+ ++P NQ K
Sbjct: 194 EFESFEDAQHALS-LNGQLLPDIAMPSQSNFPNNPDNQKK 232
Score = 39 (18.8 bits), Expect = 8.2e-07, Sum P(3) = 8.2e-07
Identities = 13/32 (40%), Positives = 14/32 (43%)
Query: 282 NNSTLAQPSAPTTPQPNSTAPQFPYIYNQQMG 313
N S L Q APT P P P N Q+G
Sbjct: 412 NLSPLPQTGAPTVPPELMFMP--PMGPNGQLG 441
>UNIPROTKB|Q3ZCE2 [details] [associations]
symbol:ELAVL1 "ELAV (Embryonic lethal, abnormal vision,
Drosophila)-like 1 (Hu antigen R)" species:9913 "Bos taurus"
[GO:0070935 "3'-UTR-mediated mRNA stabilization" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 GO:GO:0045727 eggNOG:COG0724 GO:GO:0070935
HOVERGEN:HBG002295 CTD:1994 HOGENOM:HOG000231162 KO:K13088
OrthoDB:EOG4Z8XWZ TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064
OMA:RFGGPLH EMBL:DAAA02019508 EMBL:DAAA02019509 EMBL:BC102495
IPI:IPI00703347 RefSeq:NP_001069922.1 UniGene:Bt.49576 SMR:Q3ZCE2
STRING:Q3ZCE2 Ensembl:ENSBTAT00000000805 GeneID:617316
KEGG:bta:617316 InParanoid:Q3ZCE2 NextBio:20900599 Uniprot:Q3ZCE2
Length = 326
Score = 188 (71.2 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 48/160 (30%), Positives = 83/160 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+ T L V L ++T++ L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A +P + ++++ L + + +++ F+ F
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRNMTQKDVEDMFSRF 129
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
G I N R++ D T S+G AF+ F K++EAE AIT+ NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
PGN S+ + IF+ +L + + L + F PFG ++N +++RD T K KG+ FV+
Sbjct: 237 PGN-----ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG + ++ ++ T K
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 119 (46.9 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++ V L + L+ F+ GE+ + +++RD S GY FV++V +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Query: 150 AENAITAMNGQWLGSRSIRTNWS 172
AE AI +NG L S++I+ +++
Sbjct: 74 AERAINTLNGLRLQSKTIKVSYA 96
Score = 90 (36.7 bits), Expect = 2.8e-18, Sum P(2) = 2.8e-18
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H ++ V +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 227 HMSGLSGVNVPGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A AI S++
Sbjct: 286 GFGFVTMTNYEEAAMAIASLN 306
Score = 81 (33.6 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAI 259
+ +Y G +++ ++ V +FS FG I++ RV + +G AF++F + A AI
Sbjct: 105 DANLYISGLPRNMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 260 ESIHNTDINGH 270
T NGH
Sbjct: 165 -----TSFNGH 170
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 236 (88.1 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 69/271 (25%), Positives = 129/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NL+ S+ + L FS G + KV+ E G+ + F+ F MN
Sbjct: 101 IFIKNLENSIDNKALYDTFSTFGSILSSKVVYNEHGSRGFGFVHFETHEAAQKAINTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + +I+V +L +++ Q L++ F+ FG+ +
Sbjct: 161 MLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVKNLRVDMDEQGLQDLFSQFGKTQSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD +S+G+ F++F K EA+ A+ MNG+ + + + +K NE KR
Sbjct: 221 KVMRDSNG-QSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVG-RAQKRAERQNELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E N+ N +Y +N++ + +VFS +G I +V E
Sbjct: 279 RFEQMK----QERQNRYQGVN--LYVKNLDDSINDDRLKEVFSTYGVITSAKVMTESSHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 190 (71.9 bits), Expect = 2.8e-12, Sum P(2) = 2.8e-12
Identities = 59/208 (28%), Positives = 98/208 (47%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +YV NL V + E+ L LFSQ G + KV+R+ + F+ F
Sbjct: 191 TNIYVKNLRVDMDEQGLQDLFSQFGKTQSVKVMRDSNGQSRGFGFINFEKHEEAQKAVDH 250
Query: 66 MN-KRV-----FLEKEMK----VNWASSPGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K V ++ + K N Q KQ+ N Y +++V +L I L
Sbjct: 251 MNGKEVSGQLLYVGRAQKRAERQNELKRRFEQMKQERQNRYQGVNLYVKNLDDSINDDRL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
KE F+ +G I++ +++ + SKG+ FV F EA A+T MNG+ +G++ + +
Sbjct: 311 KEVFSTYGVITSAKVMTESS--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDE 197
RK +TN+ +R+ S + +F +
Sbjct: 369 QRKEERKAILTNQYRRRLSRSVLSSFQQ 396
Score = 187 (70.9 bits), Expect = 6.4e-12, Sum P(2) = 6.4e-12
Identities = 63/268 (23%), Positives = 121/268 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXX 64
++LYVG+L VTE +L +FS IG + +V R+ YA++ F
Sbjct: 11 SSLYVGDLHPDVTEAMLYEMFSPIGTILSIRVCRDVATRRSLGYAYINFQQPADAERALD 70
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN + + +++ W+ P S +IF+ +L I+ + L + F+ FG I +
Sbjct: 71 TMNFEMIKGQPIRIMWSH---RDPGLRRSGMGNIFIKNLENSIDNKALYDTFSTFGSILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
++V + S+G+ FV F A+ AI MNG L R + ++ +R ++
Sbjct: 128 SKVVYNEHG--SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSR-------QK 178
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF--KE 241
+ + + F +Y + N V G ++L S+ F ++ +R +
Sbjct: 179 REAELGARALGFTNIYVK----NLRVDMDEQGL---QDLFSQ-FGKTQSVKVMRDSNGQS 230
Query: 242 KGYAFVKFTTKETATHAIESIHNTDING 269
+G+ F+ F E A A++ ++ +++G
Sbjct: 231 RGFGFINFEKHEEAQKAVDHMNGKEVSG 258
Score = 43 (20.2 bits), Expect = 2.9e-18, Sum P(2) = 2.9e-18
Identities = 12/33 (36%), Positives = 16/33 (48%)
Query: 276 WGKESENNSTLAQPSAPTTPQPNSTAPQFPYIY 308
W + S+ P+A QP STAP P I+
Sbjct: 429 WTAQPHGPSSTCPPAASVV-QPLSTAPH-PCIH 459
>UNIPROTKB|Q5JQF8 [details] [associations]
symbol:PABPC1L2A "Polyadenylate-binding protein 1-like 2"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471104 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
HOGENOM:HOG000217922 HSSP:P11940 EMBL:AL662864 EMBL:BC041956
EMBL:BC136492 IPI:IPI00217142 RefSeq:NP_001012995.1
RefSeq:NP_001035971.1 UniGene:Hs.450320 UniGene:Hs.567854
ProteinModelPortal:Q5JQF8 SMR:Q5JQF8 PhosphoSite:Q5JQF8
PaxDb:Q5JQF8 PRIDE:Q5JQF8 Ensembl:ENST00000373519
Ensembl:ENST00000373521 Ensembl:ENST00000453389
Ensembl:ENST00000538388 GeneID:340529 GeneID:645974 KEGG:hsa:340529
KEGG:hsa:645974 UCSC:uc004ebf.3 CTD:340529 CTD:645974
GeneCards:GC0XM072297 GeneCards:GC0XP072223 H-InvDB:HIX0056425
HGNC:HGNC:27989 HGNC:HGNC:31852 HPA:HPA041573 neXtProt:NX_Q5JQF8
PharmGKB:PA162398594 InParanoid:Q5JQF8 OMA:RIMYSHC
OrthoDB:EOG4QVCCZ NextBio:97904 Bgee:Q5JQF8 CleanEx:HS_PABPC1L2A
CleanEx:HS_PABPC1L2B Genevestigator:Q5JQF8 Uniprot:Q5JQF8
Length = 200
Score = 193 (73.0 bits), Expect = 6.6e-15, P = 6.6e-15
Identities = 48/162 (29%), Positives = 78/162 (48%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ ++ R+ + YA++ +
Sbjct: 3 SLYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALET 62
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N V + +++ W+ + K N +F+ +L I+ + L F+ FG I +C
Sbjct: 63 LNFDVIKGRPVRIMWSQRDPSLRKSGVGN---VFIKNLGKTIDNKALYNIFSAFGNILSC 119
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
++ D + KGY FV F K+ AE AI MNG +L R I
Sbjct: 120 KVACDEKG--PKGYGFVHFQKQESAERAIDVMNGMFLNYRKI 159
Score = 156 (60.0 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 31/79 (39%), Positives = 47/79 (59%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL PE+ L E F+P G I + RI RD T +S GYA+V++ + +A+ A+ +
Sbjct: 4 LYVGDLHPEVTEAMLYEKFSPAGPILSIRICRDKITRRSLGYAYVNYQQPVDAKRALETL 63
Query: 158 NGQWLGSRSIRTNWSTRKP 176
N + R +R WS R P
Sbjct: 64 NFDVIKGRPVRIMWSQRDP 82
Score = 90 (36.7 bits), Expect = 3.0e-18, Sum P(2) = 3.0e-18
Identities = 25/87 (28%), Positives = 43/87 (49%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHN 264
V+ GK ++ + + +FS FG I+ +V + KGY FV F +E+A AI+ ++
Sbjct: 92 VFIKNLGKTIDNKALYNIFSAFGNILSCKVACDEKGPKGYGFVHFQKQESAERAIDVMNG 151
Query: 265 TDINGHTVKCFWGKESENNSTLAQPSA 291
+N K F G+ + A+ A
Sbjct: 152 MFLNYR--KIFVGRFKSHKEREAERGA 176
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 241 (89.9 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 72/316 (22%), Positives = 140/316 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ N+D S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 IFIKNMDESIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIETMNG 160
Query: 69 RVFLEKEMKV-NWASSPGNQPKQDTS--NHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V ++ S + + ++++ + +I+++ LK F FG+ +
Sbjct: 161 MLLNDRKVFVGHFKSRKEREAEMGAKAVEFTNVYIKNFGEDIDSEKLKNIFTEFGKTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ D + +S+G+ FV+FV +A A+T MNG+ L R + +K E KR
Sbjct: 221 CVMTDERG-RSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVG-RAQKRLERQGELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E + N +Y +++E + K F+P+GTI +V +
Sbjct: 279 KFEQIK----QERIQRYQGVN--LYVKNLDDSIDDEKLRKEFAPYGTITSAKVMTDGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG-KESENNSTLAQPSAPTTPQPNST 300
+G+ FV F++ E AT A+ ++ ++ + ++ E + L +
Sbjct: 333 RGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQRLASIRAI 392
Query: 301 -APQFPYIYNQQMGYW 315
P P Y Q GY+
Sbjct: 393 PGPAIPTTYQQGSGYY 408
Score = 217 (81.4 bits), Expect = 3.7e-15, P = 3.7e-15
Identities = 73/269 (27%), Positives = 121/269 (44%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS G + +V R+ + YA++ F
Sbjct: 12 SLYVGDLHADVTEAMLYQKFSPAGQIMSIRVCRDVITRRSLGYAYINFQQPADAECALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V + +++ W+ PG + K N IF+ ++ I+ + L + F+ FG I +
Sbjct: 72 MNYEVIKGRPIRIMWSQRDPGLR-KSGVGN---IFIKNMDESIDNKALYDTFSAFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D SKGY FV F + A AI MNG L R + ++ +RK ER
Sbjct: 128 CKVVCDENG--SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRK------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
+ + K + F VY ++ + K++ E K S + D R + +G
Sbjct: 180 EAEMG-AKAVEFTNVYIKNFGEDID---SEKLKNIFTEF-GKTLSVC-VMTDERG-RSRG 232
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTV 272
+ FV F A A+ ++ ++NG +
Sbjct: 233 FGFVNFVNHGDARRAVTEMNGKELNGRVL 261
Score = 140 (54.3 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 45/183 (24%), Positives = 81/183 (44%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKG-CKVIREPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + E L +F++ G C + E G + F+ F
Sbjct: 191 TNVYIKNFGEDIDSEKLKNIFTEFGKTLSVCVMTDERGRSRGFGFVNFVNHGDARRAVTE 250
Query: 66 MNKRVFLEKEMKVNWASS----PGN------QPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + + + V A G Q KQ+ Y +++V +L I+ + L
Sbjct: 251 MNGKELNGRVLYVGRAQKRLERQGELKRKFEQIKQERIQRYQGVNLYVKNLDDSIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ FAP+G I++ +++ D S+G+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFAPYGTITSAKVMTDGG--HSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 241 (89.9 bits), Expect = 3.7e-18, P = 3.7e-18
Identities = 79/267 (29%), Positives = 122/267 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ + YA + F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSSAGPILSIRVYRDVITRRSLGYASVNFEQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V K +++ W+ P S ++F+ +L+ I+ + L + F+ FG I +C
Sbjct: 72 MNFDVIKGKPVRIMWSQ---RDPSLRRSGVGNVFIKNLNKTIDNKALYDTFSAFGNILSC 128
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKPPAMTNERK 184
++V D SKG+ FV F + AE AI MNG L R + + +RK ER+
Sbjct: 129 KVVCDENG--SKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRK------ERE 180
Query: 185 RQNSHTKTITFDEVY--NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
+ T+T F VY N + G FG+ + L KV + G K K
Sbjct: 181 AELG-TRTKEFTNVYIKNFGDRMDDKTLNGLFGR-FGQVLSVKVMTDEGG-------KSK 231
Query: 243 GYAFVKFTTKETATHAIESIHNTDING 269
G+ FV F E A A++ ++ ++NG
Sbjct: 232 GFGFVSFERHEDAQKAVDEMNGKELNG 258
Score = 234 (87.4 bits), Expect = 3.1e-17, P = 3.1e-17
Identities = 66/262 (25%), Positives = 124/262 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NL+ ++ + L FS G + CKV+ E G+ + F+ F MN
Sbjct: 101 VFIKNLNKTIDNKALYDTFSAFGNILSCKVVCDENGSKGHGFVHFETEEAAERAIEKMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + T ++++ + ++ +TL F FG++ +
Sbjct: 161 MLLNDRKVFVGQFKSRKEREAELGTRTKEFTNVYIKNFGDRMDDKTLNGLFGRFGQVLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D + KSKG+ FVSF + +A+ A+ MNG+ L + I + +K E KR
Sbjct: 221 KVMTD-EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHI-ELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ + +T D +Y +++E + K FSPFGTI +V E
Sbjct: 279 K---FEQVTQDRGIRYQG---INLYVKNLDDGIDDERLQKEFSPFGTITSTKVMTEGGRS 332
Query: 242 KGYAFVKFTTKETATHAIESIH 263
KG+ FV F++ E AT A+ ++
Sbjct: 333 KGFGFVCFSSPEEATKAVSEMN 354
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 45/183 (24%), Positives = 83/183 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N + ++ L LF + G V KV+ + G + F+ F
Sbjct: 191 TNVYIKNFGDRMDDKTLNGLFGRFGQVLSVKVMTDEGGKSKGFGFVSFERHEDAQKAVDE 250
Query: 66 MNKRVFLEKEMKVNWASSPGN----------QPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + K + V A + Q QD Y +++V +L I+ + L
Sbjct: 251 MNGKELNGKHIYVGPAQKKVDRHIELKRKFEQVTQDRGIRYQGINLYVKNLDDGIDDERL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A++ MNG+ + ++ + +
Sbjct: 311 QKEFSPFGTITSTKVMTEGG--RSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
>UNIPROTKB|F1PSC4 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RFGGPLH EMBL:AAEX03012469
Ensembl:ENSCAFT00000029161 Uniprot:F1PSC4
Length = 334
Score = 187 (70.9 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 48/160 (30%), Positives = 83/160 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+ T L V L ++T++ L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 23 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 82
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A +P + ++++ L + + +++ F+ F
Sbjct: 83 ERAINTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRF 137
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
G I N R++ D T S+G AF+ F K++EAE AIT+ NG
Sbjct: 138 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 177
Score = 145 (56.1 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
PGN S+ + IF+ +L + + L + F PFG ++N +++RD T K KG+ FV+
Sbjct: 245 PGN-----ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 299
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG + ++ ++ T K
Sbjct: 300 MTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 331
Score = 121 (47.7 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 31/133 (23%), Positives = 61/133 (45%)
Query: 71 FLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD 130
FL+ M + + D ++ V L + L+ F+ GE+ + +++RD
Sbjct: 4 FLKNTMSNGYEDHMAEDCRDDIGRT-NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD 62
Query: 131 PQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHT 190
S GY FV++V +AE AI +NG L S++I+ +++ + + +
Sbjct: 63 KVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLP 122
Query: 191 KTITFDEVYNQSS 203
+T+T +V + S
Sbjct: 123 RTMTQKDVEDMFS 135
Score = 90 (36.7 bits), Expect = 4.6e-18, Sum P(2) = 4.6e-18
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H ++ V +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 235 HMSGLSGVNVPGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 293
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A AI S++
Sbjct: 294 GFGFVTMTNYEEAAMAIASLN 314
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 240 (89.5 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 72/267 (26%), Positives = 123/267 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXXMN 67
++V NL SVT +L +F + G + CKV E G Y F++F +N
Sbjct: 114 VFVKNLPESVTNAVLQDMFKKFGNIVSCKVATLEDGKSRGYGFVQFEQEDAAHAAIQTLN 173
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRI 127
+ +KE+ V ++ K + + ++++ +L ++ L+E FA FG+I + I
Sbjct: 174 STIVADKEIYVGKFMKKTDRVKPE-EKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAI 232
Query: 128 VRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQN 187
+D L +GYAFV+F +A A +NG GS+ + + +K A + R+
Sbjct: 233 AKDENRL-CRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKK--AEREQLLREQ 289
Query: 188 SHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF-----KEK 242
K +E + +N +Y + EE + K FS GTI ++ K K
Sbjct: 290 FKEK---HEEQKMIAKVSN--IYVKNVNVAVTEEELRKHFSQCGTITSTKLMCDEKGKSK 344
Query: 243 GYAFVKFTTKETATHAIESIHNTDING 269
G+ FV F+T E A A+++ H +G
Sbjct: 345 GFGFVCFSTPEEAIDAVKTFHGQMFHG 371
Score = 175 (66.7 bits), Expect = 2.5e-10, P = 2.5e-10
Identities = 70/266 (26%), Positives = 109/266 (40%)
Query: 5 SQPTT--LYVGNLDVSVTEELLC---ALFSQIGPVKGCKVIREPGNDPYAFLEFXXXXXX 59
S P T LYVG+L SVTE +L A F + V+ CK + Y + F
Sbjct: 19 SSPVTASLYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYGYANFLSRQDA 78
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
N + K ++V W+ + + N +FV +L + L++ F F
Sbjct: 79 NLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGN---VFVKNLPESVTNAVLQDMFKKF 135
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G I +C++ + KS+GY FV F ++ A AI +N + + I +K +
Sbjct: 136 GNIVSCKVAT-LEDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDRV 194
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
E K N + K + D S FGK +VS + + R+
Sbjct: 195 KPEEKYTNLYMKNLDADV-----SEDLLREKFAEFGK-----IVSLAIAKD----ENRLC 240
Query: 240 KEKGYAFVKFTTKETATHAIESIHNT 265
+ GYAFV F E A A E+++ T
Sbjct: 241 R--GYAFVNFDNPEDARRAAETVNGT 264
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 33/101 (32%), Positives = 51/101 (50%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
ASS G+ S ++VGDL P + L +AFA F +++ R+ +D + +S Y
Sbjct: 13 ASSSGSSSPVTAS----LYVGDLHPSVTEGILYDAFAEFKSLTSVRLCKDASSGRSLCYG 68
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
+ +F+ + +A AI N L + IR WS R P A N
Sbjct: 69 YANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRN 109
Score = 129 (50.5 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 43/172 (25%), Positives = 78/172 (45%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN--DPYAFLEFXXXXXXXX 61
E + T LY+ NLD V+E+LL F++ G + + ++ YAF+ F
Sbjct: 197 EEKYTNLYMKNLDADVSEDLLREKFAEFGKIVSLAIAKDENRLCRGYAFVNFDNPEDARR 256
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPK----QDTSNHY---------HIFVGDLSPEIE 108
+N F K + V A + + Q H +I+V +++ +
Sbjct: 257 AAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHEEQKMIAKVSNIYVKNVNVAVT 316
Query: 109 TQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
+ L++ F+ G I++ +++ D + KSKG+ FV F EA +A+ +GQ
Sbjct: 317 EEELRKHFSQCGTITSTKLMCDEKG-KSKGFGFVCFSTPEEAIDAVKTFHGQ 367
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 235 (87.8 bits), Expect = 4.7e-18, P = 4.7e-18
Identities = 64/263 (24%), Positives = 124/263 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ L LFS G + CKV+ + G+ YA++ F MN
Sbjct: 108 IFIKNLDKSIDNRALFYLFSAFGNILSCKVVCDDNGSKGYAYVHFDSLAAANRAIWHMNG 167
Query: 69 RVFLEKEMKVNWASSPGNQPKQ----DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+++ V P + + D + ++FV ++ +I+ + LKE F +G +
Sbjct: 168 VRLNNRQVYVGRFKFPEERAAEVRTRDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTES 227
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+++RD KSKG+ FV + A+ A+ ++G+ + + + + +K + R+
Sbjct: 228 VKVIRDASG-KSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRR 286
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE--- 241
R + + E +S P +Y + +N+E + + FS FG+I +V E
Sbjct: 287 R----FERLRLKE---KSRPPGVPIYIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQ 339
Query: 242 -KGYAFVKFTTKETATHAIESIH 263
KG+ V F++ E AT A++ ++
Sbjct: 340 GKGFGVVCFSSFEEATKAVDEMN 362
Score = 231 (86.4 bits), Expect = 1.6e-17, P = 1.6e-17
Identities = 79/284 (27%), Positives = 126/284 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP--YAFLEFXXXXXXXXXXXXM 66
LYVG+LD VTE++L F GP++ ++ R+P P Y ++ F M
Sbjct: 20 LYVGDLDPDVTEDMLYKKFRPAGPLRFTRICRDPVTRSPLGYGYVNFRFPADAEWALNTM 79
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCR 126
N + K ++ W+ K N IF+ +L I+ + L F+ FG I +C+
Sbjct: 80 NFDLINGKPFRLMWSQPDDRLRKSGVGN---IFIKNLDKSIDNRALFYLFSAFGNILSCK 136
Query: 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ 186
+V D SKGYA+V F A A AI MNG L +R + K P ER +
Sbjct: 137 VVCDDNG--SKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVG--RFKFP---EERAAE 189
Query: 187 NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF--KEKGY 244
TF V+ ++ + + +EL + + P ++ IR K KG+
Sbjct: 190 VRTRDRATFTNVFVKNIGDD-------IDDEKLKELFCE-YGPTESVKVIRDASGKSKGF 241
Query: 245 AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
FV++ T E A A+ +H I+G + + G+ + LA+
Sbjct: 242 GFVRYETHEAAQKAVLDLHGKSIDGKVL--YVGRAQKKIERLAE 283
Score = 121 (47.7 bits), Expect = 0.00013, P = 0.00013
Identities = 41/180 (22%), Positives = 76/180 (42%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXX 60
D + T ++V N+ + +E L LF + GP + KVIR+ + F+ +
Sbjct: 194 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 253
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQ-------------PKQDTSNHYHIFVGDLSPEI 107
++ + K + V A + ++ I++ +L I
Sbjct: 254 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 313
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ LKE F+ FG IS +++ + + KG+ V F EA A+ MNG+ +GS+ +
Sbjct: 314 NDEKLKEEFSSFGSISRAKVMMEVG--QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 371
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 237 (88.5 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 69/271 (25%), Positives = 129/271 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NL+ S+ + L FS G + CKV+ + G+ + F+ F MN
Sbjct: 101 VFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQNAIRTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + +I+V +L +++ + L++ F+ FG+I +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLHVDVDERCLQDLFSQFGKILSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD S+G+ FV+F K +A+ A+T MNG+ + R + +K NE KR
Sbjct: 221 KVMRDDSG-HSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVG-RAQKRVERQNELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K F+P+G I +V E
Sbjct: 279 RFEQMKQ---DRLTRYQG---VNLYVKNLDDSIDDEKLRKEFAPYGMITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 220 (82.5 bits), Expect = 1.3e-15, Sum P(2) = 1.3e-15
Identities = 69/266 (25%), Positives = 122/266 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V + +++ W+ PG + K N +F+ +L I+ + L + F+ FG I +
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLR-KSGVGN---VFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D S+G+ FV F A+NAI MNG L R + ++ +R+ ER
Sbjct: 128 CKVVCDDHG--SRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRR------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
+ + + + F +Y ++ + C +DL + K+ S ++ +G
Sbjct: 180 EAELG-ARALEFTNIYVKNLHVDVDERCL---QDLFSQF-GKILSV--KVMRDDSGHSRG 232
Query: 244 YAFVKFTTKETATHAIESIHNTDING 269
+ FV F E A A+ ++ +++G
Sbjct: 233 FGFVNFEKHEDAQKAVTDMNGKEVSG 258
Score = 183 (69.5 bits), Expect = 4.9e-11, Sum P(2) = 4.9e-11
Identities = 55/183 (30%), Positives = 87/183 (47%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +YV NL V V E L LFSQ G + KV+R+ + F+ F
Sbjct: 191 TNIYVKNLHVDVDERCLQDLFSQFGKILSVKVMRDDSGHSRGFGFVNFEKHEDAQKAVTD 250
Query: 66 MN-KRV-----FLEKEMK----VNWASSPGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K V ++ + K N Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQNELKRRFEQMKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ FAP+G I++ +++ + SKG+ FV F EA A+T MNG+ +G++ + +
Sbjct: 311 RKEFAPYGMITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 39 (18.8 bits), Expect = 5.1e-18, Sum P(2) = 5.1e-18
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 285 TLAQPSA---PTTPQPNSTAPQF 304
+L QP++ P PQP + +P +
Sbjct: 399 SLQQPTSYFLPAVPQPPAQSPYY 421
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 234 (87.4 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 70/267 (26%), Positives = 119/267 (44%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG LD SVTE +L LFSQIG V +V R+ YA++ +
Sbjct: 62 SLYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAYVNYNTTADGEKALEE 121
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + + ++ W+ P + ++F+ +L I+ + L + FA FG I +C
Sbjct: 122 LNYTLIKGRPCRIMWSQ---RDPALRKTGQGNVFIKNLDVAIDNKALHDTFAAFGNILSC 178
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ +D + SKGY FV + A AI +NG L + + K +R+
Sbjct: 179 KVAQD-ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPK-----KDRQS 232
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYA 245
+ K F +Y ++ N V F + L E+ S D K +G+
Sbjct: 233 KFDEMKA-NFTNIYVKN--INPEVTDDEF-RTLFEKYGDVTSSSLAR--DQETGKSRGFG 286
Query: 246 FVKFTTKETATHAIESIHNTDINGHTV 272
FV FT+ E A+ A++ ++ + +G +
Sbjct: 287 FVNFTSHEDASKAVQELNEKEFHGQNL 313
Score = 207 (77.9 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 54/237 (22%), Positives = 114/237 (48%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXXMN 67
+++ NLDV++ + L F+ G + CKV + E GN Y F+ + +N
Sbjct: 151 VFIKNLDVAIDNKALHDTFAAFGNILSCKVAQDENGNSKGYGFVHYETDEAASQAIKHVN 210
Query: 68 KRVFLEKEMKV-NWASSPGNQPKQDT--SNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ EK++ V + Q K D +N +I+V +++PE+ + F +G++++
Sbjct: 211 GMLLNEKKVYVGHHIPKKDRQSKFDEMKANFTNIYVKNINPEVTDDEFRTLFEKYGDVTS 270
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ RD +T KS+G+ FV+F +A A+ +N + +++ + +K +ER+
Sbjct: 271 SSLARDQETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKK-----HERE 325
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
+ + E ++ N +Y ++++E + ++FS FG I +V ++
Sbjct: 326 EELRKSYEAARQEKASKYQGVN--LYIKNLDDEVDDEKLRQLFSEFGPITSAKVMRD 380
Score = 141 (54.7 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 31/95 (32%), Positives = 49/95 (51%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
SS P+ S ++VG+L P + L E F+ G +++ R+ RD T +S GYA+
Sbjct: 51 SSAAPHPQASAS----LYVGELDPSVTEAMLFELFSQIGSVASIRVCRDAVTRRSLGYAY 106
Query: 142 VSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176
V++ A+ E A+ +N + R R WS R P
Sbjct: 107 VNYNTTADGEKALEELNYTLIKGRPCRIMWSQRDP 141
Score = 107 (42.7 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 31/142 (21%), Positives = 66/142 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR--EPGNDP-YAFLEFXXXXXXXXXXX 64
T +YV N++ VT++ LF + G V + R E G + F+ F
Sbjct: 242 TNIYVKNINPEVTDDEFRTLFEKYGDVTSSSLARDQETGKSRGFGFVNFTSHEDASKAVQ 301
Query: 65 XMNKRVFLEKEMKVNWASSPGNQP----------KQDTSNHY---HIFVGDLSPEIETQT 111
+N++ F + + V A + +Q+ ++ Y ++++ +L E++ +
Sbjct: 302 ELNEKEFHGQNLYVGRAQKKHEREEELRKSYEAARQEKASKYQGVNLYIKNLDDEVDDEK 361
Query: 112 LKEAFAPFGEISNCRIVRDPQT 133
L++ F+ FG I++ +++RD T
Sbjct: 362 LRQLFSEFGPITSAKVMRDSIT 383
Score = 64 (27.6 bits), Expect = 1.9e-05, Sum P(3) = 1.9e-05
Identities = 13/41 (31%), Positives = 22/41 (53%)
Query: 135 KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
KSKG+ FV F +A A+ MN + + ++ + + RK
Sbjct: 431 KSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRK 471
Score = 53 (23.7 bits), Expect = 4.0e-16, Sum P(3) = 4.0e-16
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDIN 268
K KG+ FV F + AT A+ ++ +N
Sbjct: 431 KSKGFGFVCFANPDDATKAVAEMNQRMVN 459
Score = 46 (21.3 bits), Expect = 6.3e-18, Sum P(2) = 6.3e-18
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 353 VPGWQGIPGAQPTAQQ 368
+PG G+PG P A+Q
Sbjct: 620 MPGGAGLPGFPPNARQ 635
>UNIPROTKB|F1N9I5 [details] [associations]
symbol:ELAVL1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0019901 "protein kinase binding" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0045727 GO:GO:0070935
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:RFGGPLH
EMBL:AADN02063542 IPI:IPI00590347 ProteinModelPortal:F1N9I5
Ensembl:ENSGALT00000001029 Uniprot:F1N9I5
Length = 326
Score = 185 (70.2 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 48/160 (30%), Positives = 82/160 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+ T L V L ++T++ L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 15 DDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDA 74
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A +P + ++++ L + + +++ F+ F
Sbjct: 75 ERAINTLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRSMTQKDVEDMFSRF 129
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
G I N R++ D T S+G AF+ F K++EAE AIT NG
Sbjct: 130 GRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITNFNG 169
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
PGN S+ + IF+ +L + + L + F PFG ++N +++RD T K KG+ FV+
Sbjct: 237 PGN-----ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG + ++ ++ T K
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 119 (46.9 bits), Expect = 8.2e-10, Sum P(2) = 8.2e-10
Identities = 24/83 (28%), Positives = 45/83 (54%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++ V L + L+ F+ GE+ + +++RD S GY FV++V +
Sbjct: 14 RDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKD 73
Query: 150 AENAITAMNGQWLGSRSIRTNWS 172
AE AI +NG L S++I+ +++
Sbjct: 74 AERAINTLNGLRLQSKTIKVSYA 96
Score = 90 (36.7 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H ++ V +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 227 HMSGLSGVNVPGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A AI S++
Sbjct: 286 GFGFVTMTNYEEAAMAIASLN 306
Score = 81 (33.6 bits), Expect = 6.9e-09, Sum P(2) = 6.9e-09
Identities = 21/71 (29%), Positives = 36/71 (50%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAI 259
+ +Y G + + ++ V +FS FG I++ RV + +G AF++F + A AI
Sbjct: 105 DANLYISGLPRSMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAI 164
Query: 260 ESIHNTDINGH 270
T+ NGH
Sbjct: 165 -----TNFNGH 170
>UNIPROTKB|Q15717 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0070935
"3'-UTR-mediated mRNA stabilization" evidence=IDA;IMP] [GO:0048255
"mRNA stabilization" evidence=IDA;IMP] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0003723 "RNA binding" evidence=IDA]
[GO:0019901 "protein kinase binding" evidence=IPI] [GO:0035925
"mRNA 3'-UTR AU-rich region binding" evidence=IDA] [GO:0045727
"positive regulation of translation" evidence=IDA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0007275 "multicellular organismal
development" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0007275 GO:GO:0005829 GO:GO:0010467 GO:GO:0016071
GO:GO:0005654 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0017091 EMBL:CH471139 GO:GO:0045727 eggNOG:COG0724
GO:GO:0070935 HOVERGEN:HBG002295 EMBL:U38175 EMBL:BT009793
EMBL:BC003376 IPI:IPI00940851 RefSeq:NP_001410.2 UniGene:Hs.184492
UniGene:Hs.713744 PDB:3HI9 PDB:4ED5 PDB:4EGL PDB:4FXV PDBsum:3HI9
PDBsum:4ED5 PDBsum:4EGL PDBsum:4FXV ProteinModelPortal:Q15717
SMR:Q15717 IntAct:Q15717 MINT:MINT-5001300 STRING:Q15717
PhosphoSite:Q15717 DMDM:20981691 PaxDb:Q15717 PeptideAtlas:Q15717
PRIDE:Q15717 DNASU:1994 Ensembl:ENST00000407627 GeneID:1994
KEGG:hsa:1994 UCSC:uc002mjb.3 CTD:1994 GeneCards:GC19M008023
HGNC:HGNC:3312 HPA:CAB005256 MIM:603466 neXtProt:NX_Q15717
PharmGKB:PA27740 HOGENOM:HOG000231162 InParanoid:Q15717 KO:K13088
OrthoDB:EOG4Z8XWZ PhylomeDB:Q15717 BindingDB:Q15717
ChEMBL:CHEMBL1250379 EvolutionaryTrace:Q15717 GenomeRNAi:1994
NextBio:8063 ArrayExpress:Q15717 Bgee:Q15717 CleanEx:HS_ELAVL1
Genevestigator:Q15717 GermOnline:ENSG00000066044 TIGRFAMs:TIGR01661
Uniprot:Q15717
Length = 326
Score = 185 (70.2 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 47/155 (30%), Positives = 81/155 (52%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXXXXXX 64
T L V L ++T++ L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 20 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 79
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N K +KV++A +P + ++++ L + + +++ F+ FG I N
Sbjct: 80 TLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIIN 134
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
R++ D T S+G AF+ F K++EAE AIT+ NG
Sbjct: 135 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
Score = 145 (56.1 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
PGN S+ + IF+ +L + + L + F PFG ++N +++RD T K KG+ FV+
Sbjct: 237 PGN-----ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 291
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG + ++ ++ T K
Sbjct: 292 MTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 323
Score = 118 (46.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 105 PEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163
P+ TQ L+ F+ GE+ + +++RD S GY FV++V +AE AI +NG L
Sbjct: 28 PQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQ 87
Query: 164 SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSS 203
S++I+ +++ + + + +T+T +V + S
Sbjct: 88 SKTIKVSYARPSSEVIKDANLYISGLPRTMTQKDVEDMFS 127
Score = 90 (36.7 bits), Expect = 6.9e-18, Sum P(2) = 6.9e-18
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H ++ V +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 227 HMSGLSGVNVPGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 285
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A AI S++
Sbjct: 286 GFGFVTMTNYEEAAMAIASLN 306
>ZFIN|ZDB-GENE-990415-245 [details] [associations]
symbol:elavl1 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 1 (Hu antigen R)" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-245 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:BX649372 IPI:IPI00817195
PRIDE:F1QM02 Ensembl:ENSDART00000146123 ArrayExpress:F1QM02
Bgee:F1QM02 Uniprot:F1QM02
Length = 340
Score = 186 (70.5 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 50/165 (30%), Positives = 85/165 (51%)
Query: 1 MCDE--SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXX 55
M DE T L V L +++++ L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 25 MADELIDSKTNLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLN 84
Query: 56 XXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEA 115
+N K +KV++A +P D+ ++++ L + + ++E
Sbjct: 85 PNDAERAISTLNGLRLQSKTIKVSYA-----RPSSDSIKDANLYISGLPKTMTQKDVEEM 139
Query: 116 FAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
F +G I N R++ D + S+G AF+ F K+AEAE+AI +NGQ
Sbjct: 140 FGRYGRIINSRVLVDQASGLSRGVAFIRFDKRAEAEDAIKDLNGQ 184
Score = 144 (55.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 31/92 (33%), Positives = 53/92 (57%)
Query: 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
PGN +S+ + IF+ +L + + L + F PFG ++N +++RD T K KG+ FV+
Sbjct: 251 PGN-----SSSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 305
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG + ++ ++ T K
Sbjct: 306 MTHYEEAAMAIASLNGYRLGDKILQVSFKTSK 337
Score = 120 (47.3 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 26/102 (25%), Positives = 54/102 (52%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + L+ F+ GE+ + +++RD S GY FV+++ +AE AI+
Sbjct: 35 NLIVNYLPQNMSQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNPNDAERAIST 94
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L S++I+ +++ ++ + + KT+T +V
Sbjct: 95 LNGLRLQSKTIKVSYARPSSDSIKDANLYISGLPKTMTQKDV 136
Score = 90 (36.7 bits), Expect = 7.0e-18, Sum P(2) = 7.0e-18
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H ++ V SS C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 241 HMSGMSGVNVPGNSSSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 299
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A AI S++
Sbjct: 300 GFGFVTMTHYEEAAMAIASLN 320
>SGD|S000001128 [details] [associations]
symbol:NAM8 "RNA binding protein, component of the U1 snRNP
protein" species:4932 "Saccharomyces cerevisiae" [GO:0005739
"mitochondrion" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;IPI] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0071004 "U2-type prespliceosome" evidence=IDA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IPI] [GO:0005685 "U1
snRNP" evidence=IDA] [GO:0003729 "mRNA binding" evidence=IPI]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0000243 "commitment complex"
evidence=IPI] [GO:0006376 "mRNA splice site selection"
evidence=IMP] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SGD:S000001128 GO:GO:0005739 GO:GO:0000166 EMBL:BK006934
GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0000243 eggNOG:COG0724
GO:GO:0048026 GO:GO:0006376 GO:GO:0071004 OrthoDB:EOG44BFB8
EMBL:U00060 GO:GO:0005685 EMBL:X64763 EMBL:D11461 PIR:S46720
RefSeq:NP_011954.1 ProteinModelPortal:Q00539 SMR:Q00539
DIP:DIP-2749N IntAct:Q00539 MINT:MINT-612683 STRING:Q00539
PaxDb:Q00539 PeptideAtlas:Q00539 EnsemblFungi:YHR086W GeneID:856486
KEGG:sce:YHR086W CYGD:YHR086w GeneTree:ENSGT00510000047100
HOGENOM:HOG000066109 OMA:MNTGMNT NextBio:982182
Genevestigator:Q00539 GermOnline:YHR086W Uniprot:Q00539
Length = 523
Score = 161 (61.7 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 41/132 (31%), Positives = 62/132 (46%)
Query: 45 NDPYAFLEFXXXXXXXXXXXXMNKRV--FLEKEMKVNWASSPGNQPKQD-----TSNHYH 97
N Y F++F + F K++K+NWA+S + + N+
Sbjct: 105 NQGYCFVDFPSSTHAANALLKNGMLIPNFPNKKLKLNWATSSYSNSNNSLNNVKSGNNCS 164
Query: 98 IFVGDLSPEIETQTLKEAFAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
IFVGDL+P + L E F + S+ +IV D T SKGY FV F E + A++
Sbjct: 165 IFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALSE 224
Query: 157 MNGQWLGSRSIR 168
M G +L R+I+
Sbjct: 225 MQGVFLNGRAIK 236
Score = 132 (51.5 bits), Expect = 1.3e-05, P = 1.3e-05
Identities = 49/197 (24%), Positives = 86/197 (43%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEIS-NCRIV---------RDPQTLKS-KGYAFVSFVK 146
+++GDL P + T+++ +A GE + N R++ R K+ +GY FV F
Sbjct: 56 LYMGDLDPTWDKNTVRQIWASLGEANINVRMMWNNTLNNGSRSSMGPKNNQGYCFVDFPS 115
Query: 147 KAEAENAITAMNGQWLGS---RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSS 203
A NA+ NG + + + ++ NW+T + +N N N S
Sbjct: 116 STHAANALLK-NGMLIPNFPNKKLKLNWATS---SYSNSNNSLN------------NVKS 159
Query: 204 PTNCTVYCGGFGKDLNEELVSKVF------SPFGTIVDIRVF-KEKGYAFVKFTTKETAT 256
NC+++ G ++ E + ++F + IV +V KGY FVKFT +
Sbjct: 160 GNNCSIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQ 219
Query: 257 HAIESIHNTDINGHTVK 273
A+ + +NG +K
Sbjct: 220 LALSEMQGVFLNGRAIK 236
Score = 127 (49.8 bits), Expect = 8.5e-18, Sum P(2) = 8.5e-18
Identities = 31/111 (27%), Positives = 51/111 (45%)
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIES 261
+ P N TV+ GG + E+ + F PFGTIV +++ K FV++ + +A AI
Sbjct: 308 TDPNNTTVFIGGLSSLVTEDELRAYFQPFGTIVYVKIPVGKCCGFVQYVDRLSAEAAIAG 367
Query: 262 IHNTDINGHTVKCFWGKESENNSTLAQPSAPTT-----PQPNSTAPQFPYI 307
+ I V+ WG+ ++ + L Q + QP P + YI
Sbjct: 368 MQGFPIANSRVRLSWGRSAKQTALLQQAMLSNSLQVQQQQPGLQQPNYGYI 418
Score = 60 (26.2 bits), Expect = 5.8e-07, Sum P(2) = 5.8e-07
Identities = 28/112 (25%), Positives = 52/112 (46%)
Query: 9 TLYVGNLDVSVTEELLCALF-SQIGPVKGCKVIREP--G-NDPYAFLEFXXXXXXXXXXX 64
+++VG+L +VTE L LF ++ K++ + G + Y F++F
Sbjct: 164 SIFVGDLAPNVTESQLFELFINRYASTSHAKIVHDQVTGMSKGYGFVKFTNSDEQQLALS 223
Query: 65 XMNKRVFLE-KEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPE-IETQTLKE 114
M + VFL + +KV S G Q +N Y+ L+ E ++++ L +
Sbjct: 224 EM-QGVFLNGRAIKVGPTS--GQQQHVSGNNDYNRSSSSLNNENVDSRFLSK 272
>UNIPROTKB|B4DVB8 [details] [associations]
symbol:ELAVL1 "ELAV-like protein 1" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 UniGene:Hs.184492
UniGene:Hs.713744 HGNC:HGNC:3312 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AC010336 EMBL:AC008975 EMBL:AK301013
IPI:IPI00301936 ProteinModelPortal:B4DVB8 SMR:B4DVB8 IntAct:B4DVB8
STRING:B4DVB8 PRIDE:B4DVB8 Ensembl:ENST00000351593 OMA:RFGGPLH
ArrayExpress:B4DVB8 Bgee:B4DVB8 Uniprot:B4DVB8
Length = 353
Score = 185 (70.2 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 47/155 (30%), Positives = 81/155 (52%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXXXXXX 64
T L V L ++T++ L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 47 TNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAIN 106
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N K +KV++A +P + ++++ L + + +++ F+ FG I N
Sbjct: 107 TLNGLRLQSKTIKVSYA-----RPSSEVIKDANLYISGLPRTMTQKDVEDMFSRFGRIIN 161
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
R++ D T S+G AF+ F K++EAE AIT+ NG
Sbjct: 162 SRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 196
Score = 145 (56.1 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 31/92 (33%), Positives = 52/92 (56%)
Query: 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
PGN S+ + IF+ +L + + L + F PFG ++N +++RD T K KG+ FV+
Sbjct: 264 PGN-----ASSGWCIFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVT 318
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG + ++ ++ T K
Sbjct: 319 MTNYEEAAMAIASLNGYRLGDKILQVSFKTNK 350
Score = 119 (46.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 31/133 (23%), Positives = 61/133 (45%)
Query: 71 FLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD 130
FL+ M + + D ++ V L + L+ F+ GE+ + +++RD
Sbjct: 23 FLKNTMSNGYEDHMAEDCRGDIGRT-NLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRD 81
Query: 131 PQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHT 190
S GY FV++V +AE AI +NG L S++I+ +++ + + +
Sbjct: 82 KVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDANLYISGLP 141
Query: 191 KTITFDEVYNQSS 203
+T+T +V + S
Sbjct: 142 RTMTQKDVEDMFS 154
Score = 90 (36.7 bits), Expect = 1.3e-17, Sum P(2) = 1.3e-17
Identities = 22/81 (27%), Positives = 42/81 (51%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H ++ V +S C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 254 HMSGLSGVNVPGNASSGWC-IFIYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 312
Query: 243 GYAFVKFTTKETATHAIESIH 263
G+ FV T E A AI S++
Sbjct: 313 GFGFVTMTNYEEAAMAIASLN 333
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 231 (86.4 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 70/269 (26%), Positives = 128/269 (47%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE+LL F+ +GPV ++ R+ + Y ++ F
Sbjct: 11 SLYVGDLHEDVTEDLLFRKFNTVGPVLSIRICRDLISHRSLGYGYVNFLQVGDAQKALET 70
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN + K +++ W+ K N +F+ +L I+ +TL E F+PFG+I +
Sbjct: 71 MNFDLIKGKSIRLMWSQRDACLRKSGIGN---VFIKNLDKSIDNKTLYEHFSPFGKIMSS 127
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKP-PAMTNER 183
+++ D + SKGY FV + + A+ AI MNG+ L ++ + +RK A E+
Sbjct: 128 KVMTDEEG--SKGYGFVHYQDQRAADRAIEEMNGKLLRDSTLFVARFKSRKDREAELREK 185
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
+ ++ F + + S + V+ +G+ L+ +++ K K
Sbjct: 186 PAEFTNVYIKNFGDDMDDESLRS--VF-SKYGQTLSVKVMKDASG-----------KSKR 231
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTV 272
+ FV F + + A +A+E ++ DING T+
Sbjct: 232 FGFVSFDSHKAAKNAVEDMNGRDINGQTI 260
Score = 193 (73.0 bits), Expect = 7.1e-13, P = 7.1e-13
Identities = 56/262 (21%), Positives = 122/262 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + KV+ E G+ Y F+ + MN
Sbjct: 100 VFIKNLDKSIDNKTLYEHFSPFGKIMSSKVMTDEEGSKGYGFVHYQDQRAADRAIEEMNG 159
Query: 69 RVFLEKEMKV-NWASSPGNQP--KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
++ + + V + S + ++ + ++++ + +++ ++L+ F+ +G+ +
Sbjct: 160 KLLRDSTLFVARFKSRKDREAELREKPAEFTNVYIKNFGDDMDDESLRSVFSKYGQTLSV 219
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++++D KSK + FVSF A+NA+ MNG+ + ++I + +K E K
Sbjct: 220 KVMKDASG-KSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQA-ELKE 277
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
K + + + + +Y +++E + K FS FG+I ++V +E
Sbjct: 278 MFEQMKK---ERIRARQA---AKLYIKNLDDTIDDETLRKEFSVFGSICRVKVMQEAGQS 331
Query: 242 KGYAFVKFTTKETATHAIESIH 263
KG+ + F + E A A+ ++
Sbjct: 332 KGFGLICFFSPEAAAKAMAEMN 353
Score = 126 (49.4 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 42/175 (24%), Positives = 79/175 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L ++FS+ G KV+++ + F+ F
Sbjct: 190 TNVYIKNFGDDMDDESLRSVFSKYGQTLSVKVMKDASGKSKRFGFVSFDSHKAAKNAVED 249
Query: 66 MNKR------VFLEK-EMKVNWASSPGN---QPKQD---TSNHYHIFVGDLSPEIETQTL 112
MN R +F+ + + KV + Q K++ +++ +L I+ +TL
Sbjct: 250 MNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKERIRARQAAKLYIKNLDDTIDDETL 309
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
++ F+ FG I CR+ + +SKG+ + F A A+ MNG+ LGS+ +
Sbjct: 310 RKEFSVFGSI--CRVKVMQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPL 362
>WB|WBGene00004723 [details] [associations]
symbol:sap-49 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0042127 "regulation of cell proliferation"
evidence=IMP] [GO:0040020 "regulation of meiosis" evidence=IMP]
[GO:0040022 "feminization of hermaphroditic germ-line"
evidence=IMP] [GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0009792 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011 GO:GO:0005681
GO:GO:0003723 GO:GO:0042127 GO:GO:0040035 GO:GO:0007281 EMBL:Z46676
GO:GO:0040020 NextBio:883379 GO:GO:0040022 eggNOG:COG0724
GeneTree:ENSGT00690000101901 PIR:T19069 RefSeq:NP_001021932.1
ProteinModelPortal:Q09442 SMR:Q09442 IntAct:Q09442 STRING:Q09442
PaxDb:Q09442 EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2
GeneID:4363023 KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 230 (86.0 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 56/177 (31%), Positives = 96/177 (54%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E +L L Q GPV + ++ + + F+EF
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KVN AS+ ++ D + IFVG+L PE++ + L + F+ F
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RD + SKG+AF++F ++ A+ AMNGQ+L +R+I +++ ++
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 180
>UNIPROTKB|Q09442 [details] [associations]
symbol:sap-49 "Splicing factor 3B subunit 4" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009792 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0040011
GO:GO:0005681 GO:GO:0003723 GO:GO:0042127 GO:GO:0040035
GO:GO:0007281 EMBL:Z46676 GO:GO:0040020 NextBio:883379
GO:GO:0040022 eggNOG:COG0724 GeneTree:ENSGT00690000101901
PIR:T19069 RefSeq:NP_001021932.1 ProteinModelPortal:Q09442
SMR:Q09442 IntAct:Q09442 STRING:Q09442 PaxDb:Q09442
EnsemblMetazoa:C08B11.5.1 EnsemblMetazoa:C08B11.5.2 GeneID:4363023
KEGG:cel:CELE_C08B11.5 UCSC:C08B11.5.1 CTD:4363023
WormBase:C08B11.5 InParanoid:Q09442 OMA:VSETLLW ArrayExpress:Q09442
Uniprot:Q09442
Length = 388
Score = 230 (86.0 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 56/177 (31%), Positives = 96/177 (54%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFXXXXXX 59
+ +Q T+YVG LD V+E +L L Q GPV + ++ + + F+EF
Sbjct: 8 ERNQDATIYVGGLDEKVSESILWELMVQAGPVVSVNMPKDRVTANHQGFGFVEFMGEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KVN AS+ ++ D + IFVG+L PE++ + L + F+ F
Sbjct: 68 DYAIKILNMIKLYGKPIKVNKASA--HEKNMDVGAN--IFVGNLDPEVDEKLLYDTFSAF 123
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I +I+RD + SKG+AF++F ++ A+ AMNGQ+L +R+I +++ ++
Sbjct: 124 GVILQVPKIMRDVDSGTSKGFAFINFASFEASDTALEAMNGQFLCNRAITVSYAFKR 180
>CGD|CAL0001768 [details] [associations]
symbol:orf19.1876 species:5476 "Candida albicans" [GO:0005685
"U1 snRNP" evidence=IEA] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0000243 "commitment complex" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0006376 "mRNA splice site selection" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0001768 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AACQ01000133 EMBL:AACQ01000132
RefSeq:XP_713133.1 RefSeq:XP_713179.1 ProteinModelPortal:Q59U75
GeneID:3645147 GeneID:3645207 KEGG:cal:CaO19.1876
KEGG:cal:CaO19.9432 Uniprot:Q59U75
Length = 452
Score = 232 (86.7 bits), Expect = 2.4e-17, P = 2.4e-17
Identities = 71/282 (25%), Positives = 127/282 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQ-IGPVKGCKVIRE---PGNDPYAFLEFXXXXXXXXXXXX 65
+++G+LD TEE + L+++ + K++R+ P Y F+ F
Sbjct: 85 MWMGDLDPQWTEESIDNLWTKLVSKPHHVKIMRDRLQPSKPSYCFVTFRDQESIDLAIQR 144
Query: 66 MNKRV-FLEKEMKVNWA--SSPGNQPKQ-DTSNHYHIFVGDLSPEIETQTLKEAFA---P 118
++V + K+N++ +S G+ + ++SN Y IF+GDL+PE+ L F P
Sbjct: 145 NGQKVPDSNRVFKLNYSGRNSTGSHDRSTNSSNEYSIFIGDLAPEVSDAALYNKFNMKYP 204
Query: 119 FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS--TRKP 176
+I +++ D T KSKG+ FV F A+ M G +GS++IR + +
Sbjct: 205 -NQIKQAKVITDSSTRKSKGFGFVKFHSPDIMNRALKEMQGYNIGSKAIRVGLAAGSHVD 263
Query: 177 PAMTNERKRQNSHTKTITFDEVYNQ-SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVD 235
+ K + NQ + P N + GG + E + + F FG +V
Sbjct: 264 TSFKPVTKLDHHRVPVPQSQPALNQFTDPNNTSFTIGGLSGRITESELEQHFIGFGDLVY 323
Query: 236 IRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWG 277
RV K+ ++KF ++ A A +++ IN ++ WG
Sbjct: 324 CRVSKDYQTGYIKFYSRSAAESAFLNMYGFMINDCRLQITWG 365
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 234 (87.4 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 68/271 (25%), Positives = 127/271 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NLD S+ + L FS G + CKV+ E G+ Y F+ F MN
Sbjct: 101 VFIKNLDESIDNKALYDTFSAFGNILSCKVVCDEHGSRGYGFVHFETHEAANRAIQTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + ++++ + +++ + L+E F+ FG +
Sbjct: 161 MLLNDRKVFVGHFKSRRERELEYGAKVMEFTNVYIKNFGEDMDDKRLREIFSAFGNTLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++ D +S+G+ FV++ EA+ A++ MNG+ + R I +K +E KR
Sbjct: 221 KVMMDDSG-RSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVG-RAQKRIERQSELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K E N+ N +Y ++++ + K F P+GTI +V E
Sbjct: 279 KFEQIK----QERINRYQGVN--LYVKNLDDGIDDDRLRKEFLPYGTITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 214 (80.4 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 70/270 (25%), Positives = 120/270 (44%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFXXXXXXXXXXXX 65
+LY+G+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 12 SLYIGDLHPDVTEAMLYEKFSPAGPIMSIRVCRDIATRRSLSYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V + +++ W+ PG + K N +F+ +L I+ + L + F+ FG I +
Sbjct: 72 MNFEVIKGRPIRIMWSQRDPGLR-KSGVGN---VFIKNLDESIDNKALYDTFSAFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D S+GY FV F A AI MNG L R + ++ +R+ ER
Sbjct: 128 CKVVCDEHG--SRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRR------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF-KEK 242
+ + K + F VY ++ + K L E + S + V + + +
Sbjct: 180 ELEYG-AKVMEFTNVYIKNFGEDMD------DKRLRE-IFSAFGNTLSVKVMMDDSGRSR 231
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTV 272
G+ FV + E A A+ ++ ++NG +
Sbjct: 232 GFGFVNYGNHEEAQKAVSEMNGKEVNGRMI 261
Score = 131 (51.2 bits), Expect = 7.9e-05, Sum P(2) = 7.9e-05
Identities = 42/183 (22%), Positives = 82/183 (44%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ N + ++ L +FS G KV+ + + F+ +
Sbjct: 191 TNVYIKNFGEDMDDKRLREIFSAFGNTLSVKVMMDDSGRSRGFGFVNYGNHEEAQKAVSE 250
Query: 66 MN------KRVFLEKEMK-VNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN + +++ + K + S Q KQ+ N Y +++V +L I+ L
Sbjct: 251 MNGKEVNGRMIYVGRAQKRIERQSELKRKFEQIKQERINRYQGVNLYVKNLDDGIDDDRL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F P+G I++ +++ + SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 311 RKEFLPYGTITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALA 368
Query: 173 TRK 175
RK
Sbjct: 369 QRK 371
Score = 37 (18.1 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 9/22 (40%), Positives = 10/22 (45%)
Query: 284 STLAQPSAPTTPQPNSTAPQFP 305
S + QP T PN AP P
Sbjct: 409 SAMPQPPNRTFYSPNPVAPVRP 430
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 232 (86.7 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 76/284 (26%), Positives = 129/284 (45%)
Query: 5 SQP--TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXX 59
SQP +LYVG LD SVTE +L LFS IG V +V R+ YA++ +
Sbjct: 37 SQPHSASLYVGELDPSVTEAMLYELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNDTAHG 96
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N + K ++ W+ P + ++F+ +L I+ + L + FA F
Sbjct: 97 ERALDELNYTLIKGKPCRIMWSQ---RDPALRKTGQGNVFIKNLDSAIDNKALHDTFAAF 153
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
G I +C++ +D + SKGY FV + A NAI +NG L + + K
Sbjct: 154 GNILSCKVAQDEFGV-SKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISK---- 208
Query: 180 TNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF 239
+R+ + K F +Y ++ V F K L E+ ++ S T+
Sbjct: 209 -KDRQSKFEEMKA-NFTNIYIKNIDPE--VEDEEFRK-LFEKF-GEITS--ATLSRDSEG 260
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283
K +G+ FV F+T E+A A+E +++ ++ K + G+ + +
Sbjct: 261 KSRGFGFVNFSTHESAQAAVEEMNDKEVRSQ--KLYVGRAQKKH 302
Score = 204 (76.9 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 58/252 (23%), Positives = 120/252 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-G-NDPYAFLEFXXXXXXXXXXXXMN 67
+++ NLD ++ + L F+ G + CKV ++ G + Y F+ + +N
Sbjct: 132 VFIKNLDSAIDNKALHDTFAAFGNILSCKVAQDEFGVSKGYGFVHYETAEAANNAIKHVN 191
Query: 68 KRVFLEKEMKV-NWASSPGNQPKQDT--SNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V + S Q K + +N +I++ ++ PE+E + ++ F FGEI++
Sbjct: 192 GMLLNDKKVFVGHHISKKDRQSKFEEMKANFTNIYIKNIDPEVEDEEFRKLFEKFGEITS 251
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ RD + KS+G+ FV+F A+ A+ MN + + S+ + + +K +
Sbjct: 252 ATLSRDSEG-KSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKK-------HE 303
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGY 244
R+ K + S +Y D++++ + ++F P+GTI +V ++
Sbjct: 304 REEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKLRELFGPYGTITSAKVMRDT-- 361
Query: 245 AFVKFTTKETAT 256
A V+ T E+ T
Sbjct: 362 APVETATPESET 373
Score = 103 (41.3 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 28/138 (20%), Positives = 63/138 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N+D V +E LF + G + + R+ G + F+ F
Sbjct: 223 TNIYIKNIDPEVEDEEFRKLFEKFGEITSATLSRDSEGKSRGFGFVNFSTHESAQAAVEE 282
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQ----------DTSNHY---HIFVGDLSPEIETQTL 112
MN + +++ V A + ++ + ++ Y +++V +L+ +++ L
Sbjct: 283 MNDKEVRSQKLYVGRAQKKHEREEELRKQYEAARMEKASKYQGVNLYVKNLTDDVDDDKL 342
Query: 113 KEAFAPFGEISNCRIVRD 130
+E F P+G I++ +++RD
Sbjct: 343 RELFGPYGTITSAKVMRD 360
Score = 70 (29.7 bits), Expect = 3.6e-05, Sum P(3) = 3.6e-05
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 135 KSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
KSKG+ FV F EA A+T MN + + + + + RK
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRK 455
Score = 57 (25.1 bits), Expect = 1.0e-15, Sum P(3) = 1.0e-15
Identities = 10/30 (33%), Positives = 19/30 (63%)
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDING 269
K KG+ FV F++ + A+ A+ ++ +NG
Sbjct: 415 KSKGFGFVCFSSPDEASKAVTEMNQRMVNG 444
Score = 41 (19.5 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 13/27 (48%), Positives = 15/27 (55%)
Query: 354 PGWQG-IPGAQPTAQQMAVAQAQPSMM 379
PG QG IPGAQ + + QP MM
Sbjct: 496 PGQQGFIPGAQ----RGGMFPPQPGMM 518
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 232 (86.7 bits), Expect = 6.0e-17, P = 6.0e-17
Identities = 75/282 (26%), Positives = 129/282 (45%)
Query: 7 PTT--LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXX 61
PT+ LYVG LD SVTE +L LF+ IGPV +V R+ YA++ F
Sbjct: 77 PTSASLYVGELDPSVTEAMLFELFNSIGPVASIRVCRDAVTRRSLGYAYVNFHNMEDGEK 136
Query: 62 XXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE 121
+N + + ++ W+ + K T N +F+ +L P I+ + L + F+ FG+
Sbjct: 137 ALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGN---VFIKNLDPAIDNKALHDTFSAFGK 193
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
I +C++ D + +KGY FV F A AI +NG L + + +
Sbjct: 194 ILSCKVAVD-ELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSR-----R 247
Query: 182 ERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE 241
ER+ + K F VY ++ T T F DL + ++ S ++V + K
Sbjct: 248 ERQSKVEALKA-NFTNVYIKNLDTEITEQ--EFS-DLFGQF-GEITSL--SLVKDQNDKP 300
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283
+G+ FV + E A A++ +++ + G K + G+ + +
Sbjct: 301 RGFGFVNYANHECAQKAVDELNDKEYKGK--KLYVGRAQKKH 340
Score = 222 (83.2 bits), Expect = 1.0e-15, P = 1.0e-15
Identities = 68/270 (25%), Positives = 123/270 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKV-IREPGNDP-YAFLEFXXXXXXXXXXXXMN 67
+++ NLD ++ + L FS G + CKV + E GN Y F+ F +N
Sbjct: 170 VFIKNLDPAIDNKALHDTFSAFGKILSCKVAVDELGNAKGYGFVHFDSVESANAAIEHVN 229
Query: 68 KRVFLEKEMKV-NWASSPGNQPKQDT--SNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V + S Q K + +N ++++ +L EI Q + F FGEI++
Sbjct: 230 GMLLNDKKVYVGHHVSRRERQSKVEALKANFTNVYIKNLDTEITEQEFSDLFGQFGEITS 289
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+V+D Q K +G+ FV++ A+ A+ +N + + + + +K RK
Sbjct: 290 LSLVKD-QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRK 348
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----- 239
R K E N+ N ++ ++++E + FS FGTI ++
Sbjct: 349 RYEQ-MKL----EKMNKYQGVN--LFIKNLQDEVDDERLKAEFSAFGTITSAKIMTDEQG 401
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDING 269
K KG+ FV +TT E A A+ ++ + G
Sbjct: 402 KSKGFGFVCYTTPEEANKAVTEMNQRMLAG 431
Score = 189 (71.6 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 48/183 (26%), Positives = 86/183 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +Y+ NLD +TE+ LF Q G + ++++ + P + F+ +
Sbjct: 261 TNVYIKNLDTEITEQEFSDLFGQFGEITSLSLVKDQNDKPRGFGFVNYANHECAQKAVDE 320
Query: 66 MNKRVFLEKEMKVNWASSPGN----------QPKQDTSNHY---HIFVGDLSPEIETQTL 112
+N + + K++ V A Q K + N Y ++F+ +L E++ + L
Sbjct: 321 LNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKLEKMNKYQGVNLFIKNLQDEVDDERL 380
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
K F+ FG I++ +I+ D Q KSKG+ FV + EA A+T MN + L + + +
Sbjct: 381 KAEFSAFGTITSAKIMTDEQG-KSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALA 439
Query: 173 TRK 175
RK
Sbjct: 440 QRK 442
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 231 (86.4 bits), Expect = 7.8e-17, P = 7.8e-17
Identities = 68/268 (25%), Positives = 127/268 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NL+ S+ + L FS G + CKV+ + G+ + F+ F MN
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVVCDDHGSRGFGFVHFETHEAAQQAITTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + +I+V +L +++ Q L++ F+ FG++ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREVELGARAMEFTNIYVKNLHVDVDEQGLQDLFSRFGKMLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD S+G+ FV+F K EA+ A+ MNG+ + R + +K +E KR
Sbjct: 221 KVMRDDSG-HSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVG-RAQKRVERQSELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y +++E + K FSP+G I +V E
Sbjct: 279 RFEQLKQ---DRLTRYQG---VNLYVKNLDDSIDDEKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDING 269
KG+ FV F++ E AT A+ T++NG
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNG 355
Score = 209 (78.6 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 71/266 (26%), Positives = 122/266 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN V + +++ W+ PG + K N IF+ +L I+ + L + F+ FG I +
Sbjct: 72 MNFEVIKGQPIRIMWSQRDPGLR-KSGVGN---IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++V D S+G+ FV F A+ AIT MNG L R + ++ +R+ ER
Sbjct: 128 CKVVCDDHG--SRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRR------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
+ + + + F +Y ++ + V G +DL K+ S ++ +G
Sbjct: 180 EVELG-ARAMEFTNIYVKN--LHVDVDEQGL-QDLFSRF-GKMLSV--KVMRDDSGHSRG 232
Query: 244 YAFVKFTTKETATHAIESIHNTDING 269
+ FV F E A A+ ++ +++G
Sbjct: 233 FGFVNFQKHEEAQKAVMDMNGKEVSG 258
Score = 173 (66.0 bits), Expect = 4.7e-10, P = 4.7e-10
Identities = 58/204 (28%), Positives = 98/204 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T +YV NL V V E+ L LFS+ G + KV+R+ + F+ F
Sbjct: 191 TNIYVKNLHVDVDEQGLQDLFSRFGKMLSVKVMRDDSGHSRGFGFVNFQKHEEAQKAVMD 250
Query: 66 MN-KRV-----FLEKEMK-VNWASSPGN---QPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K V ++ + K V S Q KQD Y +++V +L I+ + L
Sbjct: 251 MNGKEVSGRLLYVGRAQKRVERQSELKRRFEQLKQDRLTRYQGVNLYVKNLDDSIDDEKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+P+G I++ +++ + SKG+ FV F EA A+T MNG+ LG++ + +
Sbjct: 311 RKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTI 193
RK +TN+ ++ S + +
Sbjct: 369 QRKEERKAILTNQYMQRLSTVRAL 392
>DICTYBASE|DDB_G0291386 [details] [associations]
symbol:DDB_G0291386 "RNA recognition motif RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0291386 EMBL:AAFI02000177 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_635179.1
ProteinModelPortal:Q54ER1 EnsemblProtists:DDB0304622 GeneID:8628125
KEGG:ddi:DDB_G0291386 InParanoid:Q54ER1 Uniprot:Q54ER1
Length = 463
Score = 227 (85.0 bits), Expect = 1.1e-16, P = 1.1e-16
Identities = 62/220 (28%), Positives = 102/220 (46%)
Query: 87 QPKQDTSNHYHIFVGDLSPEIETQTLKEAF-APFGEISNCRIVRDPQTLKSKGYAFVSFV 145
Q +Q + + +++GDL+ ++ Q L AF + + + R++ D T S+GY FV F
Sbjct: 104 QQQQQSDSDLSLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFA 163
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPT 205
E + A+ MNG ++ ++ I+ N T K R NS T TI D + P
Sbjct: 164 SDVEKDKALIDMNGFYINNKPIKVNNPTHK---------RLNSQTSTIP-D--LTSTDPN 211
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNT 265
N +Y ++E ++ +F +G I I++ K AFV F +E+A A ++N
Sbjct: 212 NTAIYVSQLDHYIDEGVLQTIFGAYGEISYIKMLTNKFSAFVNFVNRESAEAAF-GLNNF 270
Query: 266 DINGHTVKCFWGKESENNSTLAQPSAPTTPQPN-STAPQF 304
+ +K WGK + P PT N +T P F
Sbjct: 271 PVGNTRLKVQWGKNVAPPPK-SPPMTPTNIAVNINTPPIF 309
Score = 138 (53.6 bits), Expect = 2.3e-06, P = 2.3e-06
Identities = 58/218 (26%), Positives = 92/218 (42%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIREPGND---PYAFLEFXXXXXXXXXXX 64
+LY+G+L VT++ L F P V+ +VI + Y F++F
Sbjct: 114 SLYIGDLATDVTDQQLMNAFQGRYPSVRSARVIMDSATGISRGYGFVKFASDVEKDKALI 173
Query: 65 XMNKRVFLEKEMKVN------WASSPGNQPKQDTS--NHYHIFVGDLSPEIETQTLKEAF 116
MN K +KVN S P ++ N+ I+V L I+ L+ F
Sbjct: 174 DMNGFYINNKPIKVNNPTHKRLNSQTSTIPDLTSTDPNNTAIYVSQLDHYIDEGVLQTIF 233
Query: 117 APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTR-- 174
+GEIS ++ L +K AFV+FV + AE A +N +G+ ++ W
Sbjct: 234 GAYGEISYIKM------LTNKFSAFVNFVNRESAEAAF-GLNNFPVGNTRLKVQWGKNVA 286
Query: 175 ---KPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTV 209
K P MT N +T I + + SSP++ +V
Sbjct: 287 PPPKSPPMTPTNIAVNINTPPIFSTNISSTSSPSSHSV 324
>UNIPROTKB|F8WE16 [details] [associations]
symbol:TIA1 "Nucleolysin TIA-1 isoform p40" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0017091 "AU-rich element binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0042036 "negative regulation of cytokine
biosynthetic process" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0017148 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0042036 EMBL:AC016700
HGNC:HGNC:11802 ChiTaRS:TIA1 IPI:IPI00926546
ProteinModelPortal:F8WE16 SMR:F8WE16 Ensembl:ENST00000454815
ArrayExpress:F8WE16 Bgee:F8WE16 Uniprot:F8WE16
Length = 114
Score = 206 (77.6 bits), Expect = 2.2e-16, P = 2.2e-16
Identities = 42/92 (45%), Positives = 61/92 (66%)
Query: 225 KVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKES-ENN 283
+ FSPFG I++IRVF +KGY+FV+F + E+A HAI S++ T I GH VKC+WGKE+ +
Sbjct: 3 QTFSPFGQIMEIRVFPDKGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYWGKETLDMI 62
Query: 284 STLAQPSAPTTPQPNSTAPQFPYIYNQQMGYW 315
+ + Q + PQP Q+ Y QQ+G +
Sbjct: 63 NPVQQQNQIGYPQPYGQWGQW-YGNAQQIGQY 93
Score = 99 (39.9 bits), Expect = 0.00015, P = 0.00015
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171
+++ F+PFG+I R+ D KGY+FV F A +AI ++NG + ++ W
Sbjct: 1 MRQTFSPFGQIMEIRVFPD------KGYSFVRFNSHESAAHAIVSVNGTTIEGHVVKCYW 54
Query: 172 STRKPPAMTNERKRQNSHTKTITFDEVYNQ 201
++ M N ++QN I + + Y Q
Sbjct: 55 G-KETLDMINPVQQQNQ----IGYPQPYGQ 79
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 227 (85.0 bits), Expect = 2.3e-16, P = 2.3e-16
Identities = 69/271 (25%), Positives = 127/271 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NL+ S+ + L FS G + CKV E G+ + F+ F MN
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + +I+V +L +++ Q L++ F+ FG++ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD + S+ + FV+F K EA+ A+ MNG+ + R + +K NE KR
Sbjct: 221 KVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG-RAQKRVERQNELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---- 241
+ K D + +Y ++++ + K FSP+G I +V E
Sbjct: 279 RFEQMKQ---DRLRRYQG---VNLYVKNLDDSIDDDKLRKEFSPYGVITSAKVMTEGGHS 332
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV F++ E AT A+ T++NG V
Sbjct: 333 KGFGFVCFSSPEEATKAV-----TEMNGRIV 358
Score = 202 (76.2 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 67/266 (25%), Positives = 120/266 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN + + +++ W+ PG + K N IF+ +L I+ + L + F+ FG I +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLR-KSGVGN---IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++ D S+G+ FV F A+ AI MNG L R + ++ +R+ ER
Sbjct: 128 CKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
+ + + + F +Y ++ P + G +DL + K+ S ++ +
Sbjct: 180 EAELG-ARALEFTNIYVKNLPVDVDEQ--GL-QDLFSQF-GKMLSV--KVMRDNSGHSRC 232
Query: 244 YAFVKFTTKETATHAIESIHNTDING 269
+ FV F E A A+ ++ +++G
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSG 258
Score = 179 (68.1 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 59/205 (28%), Positives = 100/205 (48%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXX 65
T +YV NL V V E+ L LFSQ G + KV+R+ G+ + F+ F
Sbjct: 191 TNIYVKNLPVDVDEQGLQDLFSQFGKMLSVKVMRDNSGHSRCFGFVNFEKHEEAQKAVVH 250
Query: 66 MN-KRVF--------LEKEM-KVNWASSPGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K V +K + + N Q KQD Y +++V +L I+ L
Sbjct: 251 MNGKEVSGRLLYAGRAQKRVERQNELKRRFEQMKQDRLRRYQGVNLYVKNLDDSIDDDKL 310
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+P+G I++ +++ + SKG+ FV F EA A+T MNG+ +G++ + +
Sbjct: 311 RKEFSPYGVITSAKVMTEGG--HSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA 368
Query: 173 TRKPPA---MTNERKRQNSHTKTIT 194
RK +TN+ ++ S +T++
Sbjct: 369 QRKEERKAILTNQYMQRLSTMRTLS 393
>UNIPROTKB|Q1JQ73 [details] [associations]
symbol:elavl1-a "ELAV-like protein 1-A" species:8355
"Xenopus laevis" [GO:0003730 "mRNA 3'-UTR binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005938
"cell cortex" evidence=IDA] [GO:0007369 "gastrulation"
evidence=IMP] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0008298 "intracellular mRNA localization" evidence=IMP]
[GO:0030529 "ribonucleoprotein complex" evidence=IDA;IPI]
[GO:0031440 "regulation of mRNA 3'-end processing" evidence=IC]
[GO:0048255 "mRNA stabilization" evidence=IC;IGI] [GO:0051259
"protein oligomerization" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0005938 GO:GO:0005634 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0003730 GO:GO:0030529
GO:GO:0008298 GO:GO:0007369 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
KO:K13208 EMBL:U17596 EMBL:BC116459 PIR:I51675
RefSeq:NP_001084078.1 UniGene:Xl.49136 ProteinModelPortal:Q1JQ73
SMR:Q1JQ73 MINT:MINT-274235 PRIDE:Q1JQ73 GeneID:399292
KEGG:xla:399292 CTD:399292 Xenbase:XB-GENE-6254178 GO:GO:0031440
Uniprot:Q1JQ73
Length = 337
Score = 167 (63.8 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 49/174 (28%), Positives = 85/174 (48%)
Query: 1 MC-DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-------------GND 46
+C D+ T L V L ++T++ L +LFS IG V+ K+IR+ G+
Sbjct: 12 VCRDDIGRTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHS 71
Query: 47 -PYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSP 105
Y F+ + +N K +KV++A +P ++ ++++ L
Sbjct: 72 LGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFA-----RPSSESIKDANLYISGLPR 126
Query: 106 EIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
+ + +++ F PFG I N R++ D T S+G AF+ F K++EAE AI + NG
Sbjct: 127 TMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
Score = 144 (55.7 bits), Expect = 2.6e-07, P = 2.6e-07
Identities = 28/78 (35%), Positives = 47/78 (60%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L + + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 257 IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYEEAAMAIASL 316
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG ++++ ++ T K
Sbjct: 317 NGYRLGDKTLQVSFKTSK 334
Score = 98 (39.6 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 23/91 (25%), Positives = 48/91 (52%)
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------K 242
H +I+ V + ++ C ++ G+D +E ++ ++F PFG + +++V ++ K
Sbjct: 238 HMSSISSVNVASSATSGWC-IFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTNKCK 296
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTVK 273
G+ FV T E A AI S++ + T++
Sbjct: 297 GFGFVTMTNYEEAAMAIASLNGYRLGDKTLQ 327
>UNIPROTKB|E1C240 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AADN02057847
EMBL:AADN02057848 EMBL:AADN02057849 EMBL:AADN02057850
IPI:IPI00584568 ProteinModelPortal:E1C240
Ensembl:ENSGALT00000025475 Uniprot:E1C240
Length = 388
Score = 182 (69.1 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 49/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L S+T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 63 EDSKTNLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPKDAE 122
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 123 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 177
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 178 RIITSRILVDQVTGMSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 155 (59.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 148 (57.2 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 36/121 (29%), Positives = 64/121 (52%)
Query: 78 VNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSK 137
+N SSP + + S ++ V L + + LK F GEI +C++VRD T +S
Sbjct: 50 INNCSSPIDSGNTEDSKT-NLIVNYLPQSMTQEELKSLFGSIGEIESCKLVRDKITGQSL 108
Query: 138 GYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDE 197
GY FV++V +AE AI +NG L +++I+ +++ ++ + + KT+T E
Sbjct: 109 GYGFVNYVDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE 168
Query: 198 V 198
+
Sbjct: 169 L 169
Score = 82 (33.9 bits), Expect = 3.6e-16, Sum P(2) = 3.6e-16
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 303 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 362
Query: 259 IESIH 263
I S++
Sbjct: 363 IASLN 367
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 225 (84.3 bits), Expect = 4.6e-16, P = 4.6e-16
Identities = 71/272 (26%), Positives = 121/272 (44%)
Query: 1 MCDESQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXX 57
+ D++ P ++LY G+LD VTE L LF + V +V R+ YA++ F
Sbjct: 41 VADQTHPNSSLYAGDLDPKVTEAHLFDLFKHVANVVSVRVCRDQNRRSLGYAYINFSNPN 100
Query: 58 XXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFA 117
+N ++ +++ ++ P S +IF+ +L I+ + L E F+
Sbjct: 101 DAYRAMEALNYTPLFDRPIRIMLSN---RDPSTRLSGKGNIFIKNLDASIDNKALFETFS 157
Query: 118 PFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
FG I +C++ D T +SKGY FV F K+ A+ AI +NG + + + R+
Sbjct: 158 SFGTILSCKVAMDV-TGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRR-- 214
Query: 178 AMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR 237
ER R + +T T F VY ++ P G+D + K F + V +R
Sbjct: 215 ---QERAR-DENTPTPRFTNVYVKNLPKE-------IGEDELRKTFGK-FGVISSAVVMR 262
Query: 238 --VFKEKGYAFVKFTTKETATHAIESIHNTDI 267
+ + FV F E A A+E ++ +
Sbjct: 263 DQSGNSRCFGFVNFECTEAAASAVEKMNGISL 294
Score = 195 (73.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 61/264 (23%), Positives = 118/264 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXXXXXXXMN 67
+++ NLD S+ + L FS G + CKV + G Y F++F +N
Sbjct: 138 IFIKNLDASIDNKALFETFSSFGTILSCKVAMDVTGRSKGYGFVQFEKEESAQAAIDKLN 197
Query: 68 KRVFLEKEMKVNWASSPGNQPKQD---TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V + + + T +++V +L EI L++ F FG IS+
Sbjct: 198 GMLMNDKQVFVGHFIRRQERARDENTPTPRFTNVYVKNLPKEIGEDELRKTFGKFGVISS 257
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
++RD Q+ S+ + FV+F A +A+ MNG LG + + +K E +
Sbjct: 258 AVVMRD-QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSER-EEELR 315
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----- 239
R+ + F++ S N +Y +++E + ++FS +G + +V
Sbjct: 316 RKFEQERINRFEK----SQGAN--LYLKNLDDSVDDEKLKEMFSEYGNVTSSKVMLNPQG 369
Query: 240 KEKGYAFVKFTTKETATHAIESIH 263
+G+ FV ++ E A A+ ++
Sbjct: 370 MSRGFGFVAYSNPEEALRALSEMN 393
Score = 148 (57.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 42/183 (22%), Positives = 86/183 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXX 65
T +YV NL + E+ L F + G + V+R+ GN + F+ F
Sbjct: 229 TNVYVKNLPKEIGEDELRKTFGKFGVISSAVVMRDQSGNSRCFGFVNFECTEAAASAVEK 288
Query: 66 MNKRVFLEKEMKVNWASSPGNQPK-------QDTSNHY------HIFVGDLSPEIETQTL 112
MN + + V A + + Q+ N + ++++ +L ++ + L
Sbjct: 289 MNGISLGDDVLYVGRAQKKSEREEELRRKFEQERINRFEKSQGANLYLKNLDDSVDDEKL 348
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
KE F+ +G +++ +++ +PQ + S+G+ FV++ EA A++ MNG+ +G + + +
Sbjct: 349 KEMFSEYGNVTSSKVMLNPQGM-SRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALA 407
Query: 173 TRK 175
RK
Sbjct: 408 QRK 410
>FB|FBgn0028577 [details] [associations]
symbol:pUf68 "poly U binding factor 68kD" species:7227
"Drosophila melanogaster" [GO:0008266 "poly(U) RNA binding"
evidence=ISS;NAS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;ISS;IMP;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0006376 "mRNA splice site selection" evidence=NAS;IMP]
[GO:0007282 "cystoblast division" evidence=IMP] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=IMP]
[GO:0005634 "nucleus" evidence=IC;IDA] [GO:0051726 "regulation of
cell cycle" evidence=IMP] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0043234 "protein complex" evidence=IPI]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0001558
"regulation of cell growth" evidence=IMP] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
EMBL:AE014296 GO:GO:0008266 GO:GO:0022008 GO:GO:0000166
GO:GO:0001558 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0048477
GO:GO:0071011 GO:GO:0071013 GO:GO:0007282 eggNOG:COG0724
GO:GO:0000380 GO:GO:0006376 GO:GO:0000381
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
KO:K12838 OMA:CLQQVNG EMBL:AF190745 EMBL:AF479079 EMBL:AY061006
EMBL:BT003317 RefSeq:NP_001163315.1 RefSeq:NP_001163316.1
RefSeq:NP_001163317.1 RefSeq:NP_001163318.1 RefSeq:NP_001163319.1
RefSeq:NP_001163320.1 RefSeq:NP_525123.2 RefSeq:NP_728610.1
RefSeq:NP_728611.1 RefSeq:NP_728612.1 UniGene:Dm.7331
ProteinModelPortal:Q8T6B9 SMR:Q8T6B9 IntAct:Q8T6B9 MINT:MINT-742668
STRING:Q8T6B9 PaxDb:Q8T6B9 EnsemblMetazoa:FBtr0072709 GeneID:38173
KEGG:dme:Dmel_CG12085 CTD:38173 FlyBase:FBgn0028577
InParanoid:Q8T6B9 OrthoDB:EOG40RXXN PhylomeDB:Q8T6B9 ChiTaRS:pUf68
GenomeRNAi:38173 NextBio:807323 Bgee:Q8T6B9 GermOnline:CG12085
Uniprot:Q8T6B9
Length = 637
Score = 225 (84.3 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 62/211 (29%), Positives = 101/211 (47%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG +S E++ T++ AF PFG I + + DP T K KG+AFV + A+ A+ M
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
NG +G R+I+ + P A DEV ++ N +Y D
Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQ-------------VIDEVQEEAKSFN-RIYVASIHPD 237
Query: 218 LNEELVSKVFSPFGTIVDIRVFK------EKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+EE + VF FG I+ ++ + KGY F+++ K+ AI S++ D+ G
Sbjct: 238 LSEEDIKSVFEAFGPILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQL 297
Query: 272 VKCFWGKESENNSTLAQPSAPTTPQPNSTAP 302
++ G+ ++ P+A P NST P
Sbjct: 298 LRV--GR------SITPPNALACPTTNSTMP 320
Score = 168 (64.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 43/179 (24%), Positives = 81/179 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + +P + +AF+E+ M
Sbjct: 132 VYVGSISFELKEDTIRVAFTPFGPIKSINMSWDPITQKHKGFAFVEYEIPEGAQLALEQM 191
Query: 67 NKRVFLEKEMKVNWASS-PGNQP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ P Q +++ + I+V + P++ + +K F FG
Sbjct: 192 NGALMGGRNIKVGRPSNMPQAQQVIDEVQEEAKSFNRIYVASIHPDLSEEDIKSVFEAFG 251
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAM 179
I C++ + KGY F+ + K + AI +MN LG + +R S P A+
Sbjct: 252 PILYCKLAQGTSLHTHKGYGFIEYANKQAMDEAIASMNLFDLGGQLLRVGRSITPPNAL 310
Score = 43 (20.2 bits), Expect = 1.3e-09, Sum P(2) = 1.3e-09
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 218 LNEELVSKVFSPFGTIVDIRVFKEK 242
L EE+ + S FGT+ + +F EK
Sbjct: 554 LQEEIQEEC-SKFGTVSRVIIFNEK 577
Score = 37 (18.1 bits), Expect = 5.6e-16, Sum P(2) = 5.6e-16
Identities = 11/30 (36%), Positives = 15/30 (50%)
Query: 355 GWQGIPGAQPTAQQMAVAQAQPSMMAAYAM 384
G G+ G PT +A A+A AA A+
Sbjct: 439 GGVGV-GLVPTVATLAGAEASKGAAAAAAL 467
>UNIPROTKB|G3N063 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:DAAA02022184
EMBL:DAAA02022185 Ensembl:ENSBTAT00000065940 Uniprot:G3N063
Length = 388
Score = 177 (67.4 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 124 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 178
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 179 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 145 (56.1 bits), Expect = 3.9e-12, Sum P(2) = 3.9e-12
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N SSP + + S ++ V L + + LK F GEI +C++VRD T +S G
Sbjct: 52 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 110
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 111 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 170
Score = 145 (56.1 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 30/78 (38%), Positives = 47/78 (60%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ + T K
Sbjct: 368 NGYRLGDRVLQV-FKTNK 384
Score = 86 (35.3 bits), Expect = 5.8e-16, Sum P(2) = 5.8e-16
Identities = 18/77 (23%), Positives = 38/77 (49%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 304 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 363
Query: 259 IESIHNTDINGHTVKCF 275
I S++ + ++ F
Sbjct: 364 IASLNGYRLGDRVLQVF 380
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 222 (83.2 bits), Expect = 7.0e-16, P = 7.0e-16
Identities = 74/309 (23%), Positives = 137/309 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFXXXXXXXXXXXXMN- 67
LYV NLD S+T L +F G + CKV+ E G + F++F ++
Sbjct: 114 LYVKNLDSSITSSCLERMFCPFGSILSCKVVEENGQSKGFGFVQFDTEQSAVSARSALHG 173
Query: 68 -----KRVFLEKEM-KVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGE 121
K++F+ K + K A+ GNQ D++N ++V +L + L F+ +G
Sbjct: 174 SMVYGKKLFVAKFINKDERAAMAGNQ---DSTN---VYVKNLIETVTDDCLHTLFSQYGT 227
Query: 122 ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
+S+ ++RD +S+G+ FV+F A+ A+ ++ G LGS+ + + +K +
Sbjct: 228 VSSVVVMRDGMG-RSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKK-----D 281
Query: 182 ERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF-- 239
ER+ K D + + +Y + +NE + ++F +G IV +V
Sbjct: 282 ERREM---LKQKFSDNFIAKPNMRWSNLYVKNLSESMNETRLREIFGCYGQIVSAKVMCH 338
Query: 240 ---KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
+ KG+ FV F+ E + A ++ ++G + + E+ Q P+
Sbjct: 339 ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRLQQYFQAQPR 398
Query: 297 PNSTAPQFP 305
+ AP P
Sbjct: 399 QYTQAPSAP 407
Score = 170 (64.9 bits), Expect = 7.5e-10, P = 7.5e-10
Identities = 64/259 (24%), Positives = 113/259 (43%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GNDP-YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE+ L FS PV + R G YA++ F
Sbjct: 22 SLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINFDSPFSASNAMTR 81
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N K M++ W+ ++ + +++V +L I + L+ F PFG I +C
Sbjct: 82 LNHSDLKGKAMRIMWSQRDLAYRRRTRTGFANLYVKNLDSSITSSCLERMFCPFGSILSC 141
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWL-GSRSIRTNWSTR-KPPAMTNER 183
++V + +SKG+ FV F + A +A +A++G + G + + + + AM +
Sbjct: 142 KVVEENG--QSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQ 199
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
N + K + + V + T + Y G VS V ++ + + +G
Sbjct: 200 DSTNVYVKNL-IETVTDDCLHTLFSQY-G---------TVSSV-----VVMRDGMGRSRG 243
Query: 244 YAFVKFTTKETATHAIESI 262
+ FV F E A A+ES+
Sbjct: 244 FGFVNFCNPENAKKAMESL 262
Score = 145 (56.1 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 49/187 (26%), Positives = 90/187 (48%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
GN Q +S ++VGDLSP++ + L + F+ + + + R+ T KS YA+++F
Sbjct: 12 GNH--QHSSRFGSLYVGDLSPDVTEKDLIDKFSLNVPVVSVHLCRNSVTGKSMCYAYINF 69
Query: 145 VKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSP 204
A NA+T +N L +++R WS R + R+ + + + + S
Sbjct: 70 DSPFSASNAMTRLNHSDLKGKAMRIMWSQRD---LAYRRRTRTGFANL--YVKNLDSSIT 124
Query: 205 TNCT--VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESI 262
++C ++C FG L+ KV G + KG+ FV+F T+++A A ++
Sbjct: 125 SSCLERMFCP-FGSILS----CKVVEENG--------QSKGFGFVQFDTEQSAVSARSAL 171
Query: 263 HNTDING 269
H + + G
Sbjct: 172 HGSMVYG 178
Score = 125 (49.1 bits), Expect = 8.1e-05, P = 8.1e-05
Identities = 47/189 (24%), Positives = 83/189 (43%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXX 58
M T +YV NL +VT++ L LFSQ G V V+R+ G + F+ F
Sbjct: 195 MAGNQDSTNVYVKNLIETVTDDCLHTLFSQYGTVSSVVVMRDGMGRSRGFGFVNFCNPEN 254
Query: 59 XXXXXXXM------NKRVFLEKEMKVNWASSPGNQPKQDT------SNHYHIFVGDLSPE 106
+ +K++F+ K +K + Q D +++V +LS
Sbjct: 255 AKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAKPNMRWSNLYVKNLSES 314
Query: 107 IETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS 166
+ L+E F +G+I + +++ + +SKG+ FV F E++ A +NG + +
Sbjct: 315 MNETRLREIFGCYGQIVSAKVMCH-ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKP 373
Query: 167 IRTNWSTRK 175
I + RK
Sbjct: 374 IVVRVAERK 382
>UNIPROTKB|D4A7H6 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00192584 ProteinModelPortal:D4A7H6
SMR:D4A7H6 Ensembl:ENSRNOT00000009035 ArrayExpress:D4A7H6
Uniprot:D4A7H6
Length = 346
Score = 177 (67.4 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 149
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 155 (59.6 bits), Expect = 1.5e-08, P = 1.5e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 265 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 324
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 325 NGYRLGDRVLQVSFKTNK 342
Score = 145 (56.1 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N SSP + + S ++ V L + + LK F GEI +C++VRD T +S G
Sbjct: 23 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Score = 82 (33.9 bits), Expect = 7.8e-16, Sum P(2) = 7.8e-16
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 261 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 320
Query: 259 IESIH 263
I S++
Sbjct: 321 IASLN 325
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 201 (75.8 bits), Expect = 8.1e-16, P = 8.1e-16
Identities = 53/180 (29%), Positives = 92/180 (51%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++++ + +++ + LK+ F FG + +++ D ++ KSKG+ FVSF + +A+ A+
Sbjct: 25 NVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 83
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGK 216
MNG+ L + I + +K T E KR+ K D + +Y
Sbjct: 84 MNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQ---DRITRYQG---VNLYVKNLDD 136
Query: 217 DLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
+++E + K FSPFGTI +V E KG+ FV F++ E AT A+ T++NG V
Sbjct: 137 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TEMNGRIV 191
Score = 167 (63.8 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 24 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 83
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 84 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 143
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 144 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 201
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 202 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 235
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 222 (83.2 bits), Expect = 9.8e-16, P = 9.8e-16
Identities = 73/285 (25%), Positives = 127/285 (44%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG L+ SV E L +FS IG V +V R+ + YA++ +
Sbjct: 53 SLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKAIEE 112
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N + ++ W+ P S +IF+ +L P I+ + L + F+ FG+I +C
Sbjct: 113 LNYNPIEGRPCRIMWSQ---RDPSARRSGDGNIFIKNLHPAIDNKALHDTFSAFGKILSC 169
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ D + +SK + FV + AE AI +NG L R + K +R+
Sbjct: 170 KVATD-EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISK-----KDRES 223
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV--DIRVFKEKG 243
+ K F +Y ++ N + ++ E+L S F +I + K KG
Sbjct: 224 KFEEMKA-NFTNIYVKNIDLN-------YSEESFEKLFSP-FGKITSIYLEKDQDGKSKG 274
Query: 244 YAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQ 288
+ FV F E+A A+E +++ +ING K + G+ + L +
Sbjct: 275 FGFVNFEDHESAVKAVEELNDKEINGQ--KIYVGRAQKKRERLEE 317
Score = 216 (81.1 bits), Expect = 5.1e-15, P = 5.1e-15
Identities = 65/270 (24%), Positives = 124/270 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXXMN 67
+++ NL ++ + L FS G + CKV + G + F+ + +N
Sbjct: 142 IFIKNLHPAIDNKALHDTFSAFGKILSCKVATDEFGQSKCFGFVHYETAEAAEAAIENVN 201
Query: 68 KRVFLEKEMKVN-WASSPGNQPKQDT--SNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ ++E+ V S + K + +N +I+V ++ ++ ++ F+PFG+I++
Sbjct: 202 GMLLNDREVFVGKHISKKDRESKFEEMKANFTNIYVKNIDLNYSEESFEKLFSPFGKITS 261
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ +D Q KSKG+ FV+F A A+ +N + + + I + +K + E K
Sbjct: 262 IYLEKD-QDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERL-EELK 319
Query: 185 RQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF----- 239
+Q + + +++ ++ ++ E + + F PFGTI +V
Sbjct: 320 KQY---EAVRLEKLAKYQG---VNLFVKNLDDTIDSEKLEEEFKPFGTITSAKVMVDEAG 373
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDING 269
K KG+ FV FTT E AT AI ++ ING
Sbjct: 374 KSKGFGFVCFTTPEEATKAITEMNTRMING 403
Score = 166 (63.5 bits), Expect = 2.7e-09, P = 2.7e-09
Identities = 33/85 (38%), Positives = 50/85 (58%)
Query: 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENA 153
N ++VG+L+P + TL E F+P G++S+ R+ RD + KS GYA+V++ K + E A
Sbjct: 50 NSASLYVGELNPSVNEATLFEIFSPIGQVSSIRVCRDAVSKKSLGYAYVNYHKYEDGEKA 109
Query: 154 ITAMNGQWLGSRSIRTNWSTRKPPA 178
I +N + R R WS R P A
Sbjct: 110 IEELNYNPIEGRPCRIMWSQRDPSA 134
Score = 149 (57.5 bits), Expect = 2.2e-07, P = 2.2e-07
Identities = 48/183 (26%), Positives = 85/183 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXX 65
T +YV N+D++ +EE LFS G + + ++ G + F+ F
Sbjct: 233 TNIYVKNIDLNYSEESFEKLFSPFGKITSIYLEKDQDGKSKGFGFVNFEDHESAVKAVEE 292
Query: 66 MNKRVFLEKEMKVNWASSPGNQ----PKQ------DTSNHY---HIFVGDLSPEIETQTL 112
+N + +++ V A + KQ + Y ++FV +L I+++ L
Sbjct: 293 LNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRLEKLAKYQGVNLFVKNLDDTIDSEKL 352
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
+E F PFG I++ +++ D + KSKG+ FV F EA AIT MN + + + + +
Sbjct: 353 EEEFKPFGTITSAKVMVD-EAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALA 411
Query: 173 TRK 175
RK
Sbjct: 412 QRK 414
>UNIPROTKB|Q12926 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0003730 "mRNA 3'-UTR binding"
evidence=TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0006355 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:CH471071 GO:GO:0003730 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
EMBL:U12431 EMBL:U29943 EMBL:AB209294 EMBL:AL161628 EMBL:AL445623
EMBL:BC030692 IPI:IPI00030250 IPI:IPI00219967 PIR:I38726 PIR:I39077
RefSeq:NP_001164666.1 RefSeq:NP_001164668.1 RefSeq:NP_004423.2
UniGene:Hs.166109 ProteinModelPortal:Q12926 SMR:Q12926
STRING:Q12926 PhosphoSite:Q12926 DMDM:93141258 PaxDb:Q12926
PRIDE:Q12926 DNASU:1993 Ensembl:ENST00000223951
Ensembl:ENST00000380110 Ensembl:ENST00000380117
Ensembl:ENST00000397312 Ensembl:ENST00000544538 GeneID:1993
KEGG:hsa:1993 UCSC:uc003zps.3 UCSC:uc003zpu.3 CTD:1993
GeneCards:GC09M023690 HGNC:HGNC:3313 HPA:CAB022222 MIM:601673
neXtProt:NX_Q12926 PharmGKB:PA27741 InParanoid:Q12926 KO:K13208
OrthoDB:EOG4JHCFV PhylomeDB:Q12926 GenomeRNAi:1993 NextBio:8059
ArrayExpress:Q12926 Bgee:Q12926 CleanEx:HS_ELAVL2
Genevestigator:Q12926 GermOnline:ENSG00000107105 Uniprot:Q12926
Length = 359
Score = 177 (67.4 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 149
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 145 (56.1 bits), Expect = 7.3e-12, Sum P(2) = 7.3e-12
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N SSP + + S ++ V L + + LK F GEI +C++VRD T +S G
Sbjct: 23 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Score = 82 (33.9 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
Query: 259 IESIH 263
I S++
Sbjct: 334 IASLN 338
>MGI|MGI:1100887 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1100887 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 CTD:1993 KO:K13208 EMBL:U29088
IPI:IPI00121676 PIR:JC6057 RefSeq:NP_034616.1 UniGene:Mm.318042
ProteinModelPortal:Q60899 SMR:Q60899 STRING:Q60899
PhosphoSite:Q60899 PaxDb:Q60899 PRIDE:Q60899
Ensembl:ENSMUST00000008633 GeneID:15569 KEGG:mmu:15569
InParanoid:Q60899 NextBio:288546 Bgee:Q60899 Genevestigator:Q60899
GermOnline:ENSMUSG00000008489 Uniprot:Q60899
Length = 360
Score = 177 (67.4 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 149
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 279 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 338
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 339 NGYRLGDRVLQVSFKTNK 356
Score = 145 (56.1 bits), Expect = 7.4e-12, Sum P(2) = 7.4e-12
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N SSP + + S ++ V L + + LK F GEI +C++VRD T +S G
Sbjct: 23 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Score = 82 (33.9 bits), Expect = 1.0e-15, Sum P(2) = 1.0e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 275 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 334
Query: 259 IESIH 263
I S++
Sbjct: 335 IASLN 339
>FB|FBgn0015818 [details] [associations]
symbol:Spx "Spliceosomal protein on the X" species:7227
"Drosophila melanogaster" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS;NAS] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0005686 "U2 snRNP" evidence=ISS] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0007052 GO:GO:0022008 GO:GO:0000166 GO:GO:0003729
Gene3D:3.30.70.330 GO:GO:0071011 GO:GO:0000398 GO:GO:0005686
eggNOG:COG0724 HSSP:P11940 EMBL:X97197 ProteinModelPortal:Q24534
SMR:Q24534 IntAct:Q24534 STRING:Q24534 PRIDE:Q24534
FlyBase:FBgn0015818 InParanoid:Q24534 OrthoDB:EOG41894B
ArrayExpress:Q24534 Bgee:Q24534 Uniprot:Q24534
Length = 366
Score = 180 (68.4 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 44/129 (34%), Positives = 72/129 (55%)
Query: 48 YAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEI 107
Y F+EF MN K ++VN AS+ +Q D + IF+G+L E+
Sbjct: 75 YGFVEFLSEEDADYGIKIMNMIKLYGKPIRVNKASA--HQKNLDVGAN--IFIGNLDVEV 130
Query: 108 ETQTLKEAFAPFGEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS 166
+ + L + F+ FG I +I+RDP+T KSK +AF++F ++ A+ AMNGQ+L +R
Sbjct: 131 DEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFASFEASDAAMDAMNGQYLCNRP 190
Query: 167 IRTNWSTRK 175
I +++ +K
Sbjct: 191 ISVSYAFKK 199
Score = 78 (32.5 bits), Expect = 1.2e-15, Sum P(2) = 1.2e-15
Identities = 16/34 (47%), Positives = 21/34 (61%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPV 34
+ + +Q T+Y G LD V+E LL LF Q GPV
Sbjct: 6 IAERNQDATIYAGGLDDKVSETLLWELFVQAGPV 39
Score = 69 (29.3 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 16/72 (22%), Positives = 36/72 (50%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV-------DIRVFKEKGYAFVKFTT 251
+ ++ ++ G +++E+L+ FS FG I+ D K K +AF+ F +
Sbjct: 111 HQKNLDVGANIFIGNLDVEVDEKLLYDTFSAFGVILQTPKIMRDPETGKSKSFAFINFAS 170
Query: 252 KETATHAIESIH 263
E + A+++++
Sbjct: 171 FEASDAAMDAMN 182
Score = 67 (28.6 bits), Expect = 5.6e-06, Sum P(3) = 5.6e-06
Identities = 16/47 (34%), Positives = 24/47 (51%)
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
N + +D T +GY FV F+ + +A+ I MN L + IR N
Sbjct: 60 NVHMPKDRVTQMHQGYGFVEFLSEEDADYGIKIMNMIKLYGKPIRVN 106
>SGD|S000003391 [details] [associations]
symbol:NSR1 "Nucleolar protein that binds nuclear
localization sequences" species:4932 "Saccharomyces cerevisiae"
[GO:0003723 "RNA binding" evidence=IEA;IDA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0006364 "rRNA processing" evidence=IEA;TAS]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006950 "response to stress"
evidence=IEA] [GO:0000028 "ribosomal small subunit assembly"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 SGD:S000003391 GO:GO:0005739
GO:GO:0005730 GO:GO:0006950 EMBL:BK006941 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0000028
GO:GO:0006364 eggNOG:COG0724 EMBL:X85807 KO:K11294 OMA:VITDRES
OrthoDB:EOG422DTZ GeneTree:ENSGT00550000074656 EMBL:X57185
EMBL:Z72944 EMBL:Z72946 PIR:A39205 RefSeq:NP_011675.1
ProteinModelPortal:P27476 SMR:P27476 DIP:DIP-5537N IntAct:P27476
MINT:MINT-543806 STRING:P27476 PaxDb:P27476 PeptideAtlas:P27476
EnsemblFungi:YGR159C GeneID:853064 KEGG:sce:YGR159C CYGD:YGR159c
HOGENOM:HOG000113864 NextBio:973004 Genevestigator:P27476
GermOnline:YGR159C Uniprot:P27476
Length = 414
Score = 217 (81.4 bits), Expect = 1.4e-15, P = 1.4e-15
Identities = 61/222 (27%), Positives = 109/222 (49%)
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRI 127
KR + E + + SS Q ++T IFVG LS I+ + LK+ F G + R+
Sbjct: 140 KRKSEDAEEEEDEESSNKKQKNEETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARV 199
Query: 128 VRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQN 187
+ + T +S+GY +V F K+ AE AI M G+ + R I + ST KP A N+R ++
Sbjct: 200 IYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKP-AGNNDRAKKF 258
Query: 188 SHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV------FKE 241
T S P++ T++ G + + + + ++F+ G +V +R+ +
Sbjct: 259 GDTP----------SEPSD-TLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQP 307
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283
KG+ +V+F+ E A A++++ I+ V+ + NN
Sbjct: 308 KGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSSPRPNN 349
Score = 201 (75.8 bits), Expect = 1.1e-13, P = 1.1e-13
Identities = 52/185 (28%), Positives = 94/185 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXX 59
+ +P T++VG L S+ +E L F IG V G +VI E G D Y +++F
Sbjct: 163 ETEEPATIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYA 222
Query: 60 XXXXXXMNKRVFLEKEMKVNWASS-P-GNQPKQ----DTSNHYH--IFVGDLSPEIETQT 111
M + + + + ++S P GN + DT + +F+G+LS +
Sbjct: 223 EKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDA 282
Query: 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171
+ E FA GE+ + RI P+T + KG+ +V F +A+ A+ A+ G+++ +R +R ++
Sbjct: 283 IFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDF 342
Query: 172 STRKP 176
S+ +P
Sbjct: 343 SSPRP 347
>ZFIN|ZDB-GENE-040704-9 [details] [associations]
symbol:elavl2 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 2 (Hu antigen B)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-040704-9 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OrthoDB:EOG4JHCFV EMBL:AL954145
IPI:IPI00482002 UniGene:Dr.84858 SMR:Q1MT19
Ensembl:ENSDART00000139420 InParanoid:Q1MT19 Uniprot:Q1MT19
Length = 388
Score = 179 (68.1 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYMEPKDAE 123
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ FG
Sbjct: 124 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQFG 178
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F ++ EAE AI +NGQ
Sbjct: 179 RIITSRILVDQVTGVSRGVGFIRFDRRVEAEEAIKGLNGQ 218
Score = 155 (59.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 307 IFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVAIASL 366
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 154 (59.3 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 34/120 (28%), Positives = 63/120 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N +SP P + ++ V L + + LK F GEI +C++VRD T +S G
Sbjct: 51 NTCTSPVEMPNGSEDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 110
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV++++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 111 YGFVNYMEPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 170
Score = 80 (33.2 bits), Expect = 1.4e-15, Sum P(2) = 1.4e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 303 TGWCIFVYNLAPDADENVLWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAVA 362
Query: 259 IESIH 263
I S++
Sbjct: 363 IASLN 367
>UNIPROTKB|B1AM49 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623
UniGene:Hs.166109 HGNC:HGNC:3313 OMA:RAVENGP SMR:B1AM49
Ensembl:ENST00000359598 Uniprot:B1AM49
Length = 387
Score = 177 (67.4 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 63 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 122
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 123 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 177
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 178 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 155 (59.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 306 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 365
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 366 NGYRLGDRVLQVSFKTNK 383
Score = 145 (56.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N SSP + + S ++ V L + + LK F GEI +C++VRD T +S G
Sbjct: 51 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 109
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 110 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 169
Score = 82 (33.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 302 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 361
Query: 259 IESIH 263
I S++
Sbjct: 362 IASLN 366
>UNIPROTKB|E2RI94 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AAEX03007909
EMBL:AAEX03007910 EMBL:AAEX03007911 EMBL:AAEX03007912
Ensembl:ENSCAFT00000002645 Uniprot:E2RI94
Length = 388
Score = 177 (67.4 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 64 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 123
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 124 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 178
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 179 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 218
Score = 155 (59.6 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 307 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 366
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 367 NGYRLGDRVLQVSFKTNK 384
Score = 145 (56.1 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N SSP + + S ++ V L + + LK F GEI +C++VRD T +S G
Sbjct: 52 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 110
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 111 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 170
Score = 82 (33.9 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 303 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 362
Query: 259 IESIH 263
I S++
Sbjct: 363 IASLN 367
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 221 (82.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 72/285 (25%), Positives = 129/285 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFXXXXXXXXXXXX 65
+LY+G+L V+E +L FS GPV +V R+ + YA++ F
Sbjct: 58 SLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQPADAERALDT 117
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
MN V + M++ W+ P + + +IF+ +L I+ +++ + F+ FG I +C
Sbjct: 118 MNFEVIHGRPMRIMWSQ---RDPAARRAGNGNIFIKNLDRVIDNKSVYDTFSLFGNILSC 174
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ D + SKGY FV F + A+ AI +NG L + + +P A +
Sbjct: 175 KVATDDEG-NSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVG--KFQPRAQRMKELG 231
Query: 186 QNSHTKTITFDEVYNQS-SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGY 244
++ T F + + + + FG E+ S V + D + K KG+
Sbjct: 232 ESGLKYTNVFVKNFGEHLDQEKLSAMFSKFG-----EITSAV-----VMTDAQG-KPKGF 280
Query: 245 AFVKFTTKETATHAIESIHNTDINGHTVK---CFWGKESENNSTL 286
FV F ++ A A+E ++++ + G K C K+SE ++ L
Sbjct: 281 GFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAEL 325
Score = 200 (75.5 bits), Expect = 4.4e-13, P = 4.4e-13
Identities = 66/266 (24%), Positives = 118/266 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXXMN 67
+++ NLD + + + FS G + CKV + GN Y F+ F +N
Sbjct: 147 IFIKNLDRVIDNKSVYDTFSLFGNILSCKVATDDEGNSKGYGFVHFETEHSAQTAIEKVN 206
Query: 68 KRVFLEKEMKVNWASSPGNQPKQ--DTSNHY-HIFVGDLSPEIETQTLKEAFAPFGEISN 124
+ +K++ V + K+ ++ Y ++FV + ++ + L F+ FGEI++
Sbjct: 207 GMLLSDKKVYVGKFQPRAQRMKELGESGLKYTNVFVKNFGEHLDQEKLSAMFSKFGEITS 266
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN-WSTRKPPAMTNER 183
++ D Q K KG+ FV+F + A A+ +N L + + +K + E
Sbjct: 267 AVVMTDAQG-KPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAEL 325
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF---- 239
KR+ K E + N +Y +DLN++ + FS FGTI +V
Sbjct: 326 KRKYEALK----QERVQRYQGVN--LYVKNIEEDLNDDGLRDHFSSFGTITSAKVMVDEN 379
Query: 240 -KEKGYAFVKFTTKETATHAIESIHN 264
+ KG+ FV F E AT A+ +++
Sbjct: 380 GRSKGFGFVCFEKPEEATAAVTDMNS 405
Score = 156 (60.0 bits), Expect = 4.2e-08, P = 4.2e-08
Identities = 37/116 (31%), Positives = 59/116 (50%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
P T + +++GDL P++ L E F+ G + + R+ RD + S GYA+V+F +
Sbjct: 49 PPNATYSMASLYIGDLHPDVSEAMLFEKFSMAGPVLSIRVCRDNTSRLSLGYAYVNFQQP 108
Query: 148 AEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSS 203
A+AE A+ MN + + R +R WS R P A R+ N + D V + S
Sbjct: 109 ADAERALDTMNFEVIHGRPMRIMWSQRDPAA----RRAGNGNIFIKNLDRVIDNKS 160
Score = 141 (54.7 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 41/185 (22%), Positives = 84/185 (45%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXX 65
T ++V N + +E L A+FS+ G + V+ + P + F+ F
Sbjct: 238 TNVFVKNFGEHLDQEKLSAMFSKFGEITSAVVMTDAQGKPKGFGFVAFADQDAAGQAVEK 297
Query: 66 MNKRVFLEKEMKVNWASSPGNQP------------KQDTSNHY---HIFVGDLSPEIETQ 110
+N + + K++ + KQ+ Y +++V ++ ++
Sbjct: 298 LNDSILEGTDCKLSVCRAQKKSERSAELKRKYEALKQERVQRYQGVNLYVKNIEEDLNDD 357
Query: 111 TLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
L++ F+ FG I++ +++ D + +SKG+ FV F K EA A+T MN + +G++ +
Sbjct: 358 GLRDHFSSFGTITSAKVMVD-ENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVA 416
Query: 171 WSTRK 175
+ RK
Sbjct: 417 LAQRK 421
>ASPGD|ASPL0000076731 [details] [associations]
symbol:AN4865 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:BN001303 EMBL:AACD01000084 eggNOG:COG0724
KO:K11294 OrthoDB:EOG422DTZ RefSeq:XP_662469.1
ProteinModelPortal:Q5B3L5 STRING:Q5B3L5
EnsemblFungi:CADANIAT00005540 GeneID:2872664 KEGG:ani:AN4865.2
HOGENOM:HOG000195050 OMA:SARIMTE Uniprot:Q5B3L5
Length = 524
Score = 218 (81.8 bits), Expect = 2.0e-15, P = 2.0e-15
Identities = 52/208 (25%), Positives = 104/208 (50%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
++ + K + ++FVG+LS + + L + F FGE+S RI+ + T +S+G+ +
Sbjct: 263 AAASKKSKTEEGASANLFVGNLSWNVTEEWLHQEFEQFGELS-ARIMTERDTGRSRGFGY 321
Query: 142 VSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQ 201
V F A+A A AM + R I +++T +P ++ + + +F + Q
Sbjct: 322 VEFTNAADAAKAYEAMKEHEIDGRKINLDYATGRPANKDQGGFKERAQNRARSFGD---Q 378
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV------FKEKGYAFVKFTTKETA 255
+SP + T++ G NE+ V +VF P G ++ IR+ + KG+ +V++++ + A
Sbjct: 379 TSPESDTLFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDMESGRPKGFGYVQYSSVDEA 438
Query: 256 THAIESIHNTDINGHTVKCFWGKESENN 283
A + +I+G ++ + NN
Sbjct: 439 RKAYNELQGAEIDGRPIRLDFSTPRANN 466
Score = 118 (46.6 bits), Expect = 0.00047, P = 0.00047
Identities = 32/102 (31%), Positives = 50/102 (49%)
Query: 74 KEMKVNWASSPGNQ--PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDP 131
KE N A S G+Q P+ DT +FVG+L ++ E F P G + R+ D
Sbjct: 365 KERAQNRARSFGDQTSPESDT-----LFVGNLPFSANEDSVHEVFGPQGNVLGIRLPTDM 419
Query: 132 QTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWST 173
++ + KG+ +V + EA A + G + R IR ++ST
Sbjct: 420 ESGRPKGFGYVQYSSVDEARKAYNELQGAEIDGRPIRLDFST 461
>UNIPROTKB|Q91903 [details] [associations]
symbol:elavl2 "ELAV-like protein 2" species:8355 "Xenopus
laevis" [GO:0000122 "negative regulation of transcription from RNA
polymerase II promoter" evidence=IDA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005938 "cell cortex" evidence=IDA] [GO:0007399 "nervous system
development" evidence=IMP] [GO:0008298 "intracellular mRNA
localization" evidence=IMP] [GO:0017131 "uridine-rich cytoplasmic
polyadenylylation element binding" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA;IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0051260 "protein homooligomerization" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005938 GO:GO:0007399 GO:GO:0000166
GO:GO:0051260 Gene3D:3.30.70.330 GO:GO:0000122 GO:GO:0003730
GO:GO:0030529 GO:GO:0008298 HOVERGEN:HBG002295 TIGRFAMs:TIGR01661
HSSP:P26378 KO:K13208 EMBL:X85111 EMBL:U17597 EMBL:BC170539
EMBL:BC094189 PIR:I51676 RefSeq:NP_001081035.1
RefSeq:NP_001081613.1 UniGene:Xl.1648 UniGene:Xl.34955
ProteinModelPortal:Q91903 SMR:Q91903 MINT:MINT-2880431
GeneID:394342 GeneID:397952 KEGG:xla:394342 KEGG:xla:397952
CTD:394342 CTD:397952 Xenbase:XB-GENE-6254447
Xenbase:XB-GENE-866091 GO:GO:0017131 Uniprot:Q91903
Length = 389
Score = 176 (67.0 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 48/161 (29%), Positives = 79/161 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GND-PYAFLEFXXXXXX 59
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 62 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYGFVNYIDPKDA 121
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 122 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 176
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 177 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 217
Score = 154 (59.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 308 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 367
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 368 NGYRLGDRVLQVSFKTSK 385
Score = 134 (52.2 bits), Expect = 2.0e-10, Sum P(2) = 2.0e-10
Identities = 34/118 (28%), Positives = 61/118 (51%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL-KSKGYA 140
SSP + S ++ V L + + LK F GEI +C++VRD T +S GY
Sbjct: 53 SSPVESNNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITEGQSLGYG 111
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 112 FVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 169
Score = 82 (33.9 bits), Expect = 2.0e-15, Sum P(2) = 2.0e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 304 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 363
Query: 259 IESIH 263
I S++
Sbjct: 364 IASLN 368
>UNIPROTKB|F1NDG5 [details] [associations]
symbol:374274 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00680000099967 EMBL:AADN02030982 IPI:IPI00680068
Ensembl:ENSGALT00000033037 ArrayExpress:F1NDG5 Uniprot:F1NDG5
Length = 56
Score = 197 (74.4 bits), Expect = 2.3e-15, P = 2.3e-15
Identities = 36/55 (65%), Positives = 45/55 (81%)
Query: 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
S+H+H+FVGDLSPEI T+ +K AFAPFG+IS+ R+V+D T KSKGY FVSF K
Sbjct: 1 SDHFHVFVGDLSPEITTEDIKSAFAPFGKISDARVVKDMATGKSKGYGFVSFYNK 55
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 216 (81.1 bits), Expect = 4.1e-15, P = 4.1e-15
Identities = 67/271 (24%), Positives = 119/271 (43%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXXMN 67
+++ NLD + + L FS G + CKV+ + GN + F+ + +N
Sbjct: 100 VFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVN 159
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRI 127
+ +++ V S + + ++F +LS ++ LKE +GEI+N I
Sbjct: 160 GMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITI 219
Query: 128 VRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQN 187
+ D + KSKG+ F +F A+N + NG+ + I + +K ER+ +
Sbjct: 220 MADDKG-KSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKI-----EREAEL 273
Query: 188 SHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------ 241
HT F+ Y +Y ++ + + +VFS FGTI V K+
Sbjct: 274 KHT----FETKYQ-----GVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTS 324
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
KG+ FV +T + AT A+ T++NG +
Sbjct: 325 KGFGFVCYTAPDEATRAV-----TEMNGRMI 350
Score = 191 (72.3 bits), Expect = 3.4e-12, P = 3.4e-12
Identities = 59/270 (21%), Positives = 116/270 (42%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFXXXXXXXXXXX 64
++LYVG+L V+E+ L +F+Q+G V +V R+ YA++ +
Sbjct: 10 SSLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALD 69
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N K ++ W+ + K N +F+ +L I+ + L + F+ FG I +
Sbjct: 70 TLNNTPIRGKACRIMWSQRDPSLRKSGVGN---VFIKNLDKGIDHKALYDTFSAFGNILS 126
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
C++V D SKG+ FV + + A+ AI +NG + + + P +++ +
Sbjct: 127 CKVVTDDGN-SSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVG------PFKSSKER 179
Query: 185 RQNSHTK--TITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
Q + K + F + P +G+ ++ + TI+ K K
Sbjct: 180 GQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGE------ITNI-----TIMADDKGKSK 228
Query: 243 GYAFVKFTTKETATHAIESIHNTDINGHTV 272
G+ F F + E A + +E+ + +G +
Sbjct: 229 GFGFANFESAEAAKNVVENENGKIFHGKPI 258
Score = 147 (56.8 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 40/176 (22%), Positives = 76/176 (43%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXX 65
T ++ NL V + L L Q G + ++ + G + F F
Sbjct: 188 TNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVEN 247
Query: 66 MNKRVFLEKEMKVNWASSPGNQP---KQDTSNHY---HIFVGDLSPEIETQTLKEAFAPF 119
N ++F K + A + K Y ++++ ++ I+ L+E F+ F
Sbjct: 248 ENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQF 307
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G I++ +++D + SKG+ FV + EA A+T MNG+ +G++ + + RK
Sbjct: 308 GTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRK 363
>CGD|CAL0005232 [details] [associations]
symbol:orf19.6090 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 CGD:CAL0005232 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AACQ01000036 EMBL:AACQ01000035 GO:GO:0044011
eggNOG:COG0724 KO:K11294 RefSeq:XP_718946.1 RefSeq:XP_719050.1
ProteinModelPortal:Q5AB84 STRING:Q5AB84 GeneID:3639341
GeneID:3639464 KEGG:cal:CaO19.13509 KEGG:cal:CaO19.6090
Uniprot:Q5AB84
Length = 400
Score = 212 (79.7 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 58/206 (28%), Positives = 97/206 (47%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
++P T +FVG LS I+ LK F G + R++ + T KS+GY +V F
Sbjct: 158 SKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFE 217
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQS-SP 204
K+ AE A+ M G+ + R I + ST KP A K N K Y S SP
Sbjct: 218 SKSAAEKALEEMQGKEIDGRPINLDMSTGKPHAS----KSNNDRAKQ------YGDSQSP 267
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV------FKEKGYAFVKFTTKETATHA 258
+ T++ G + N + + VF +G ++ RV + KG+ +V+F++ + A A
Sbjct: 268 PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAA 327
Query: 259 IESIHNTDINGHTVKCFWGKESENNS 284
+E+++ I G + + +N +
Sbjct: 328 LEAMNGEYIEGRPCRLDFSTPRDNTN 353
Score = 183 (69.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 51/196 (26%), Positives = 86/196 (43%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXX 62
+P TL+VG L ++ + L F IG V G +VI E Y +++F
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 63 XXXMNKRVFLEKEMKVNWASSPGNQPKQ--DTSNHYH---------IFVGDLSPEIETQT 111
M + + + ++ ++ + K D + Y +F+G+LS
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171
L F +G + +CR+ P T + KG+ +V F EA+ A+ AMNG+++ R R ++
Sbjct: 286 LFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDF 345
Query: 172 STRKPPAMTNERKRQN 187
ST P TN N
Sbjct: 346 ST--PRDNTNNNNNNN 359
>UNIPROTKB|Q5AB84 [details] [associations]
symbol:NSR1 "Potential nuclear localization sequence
binding protein Nsr1p" species:237561 "Candida albicans SC5314"
[GO:0044011 "single-species biofilm formation on inanimate
substrate" evidence=IMP] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0005232
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AACQ01000036
EMBL:AACQ01000035 GO:GO:0044011 eggNOG:COG0724 KO:K11294
RefSeq:XP_718946.1 RefSeq:XP_719050.1 ProteinModelPortal:Q5AB84
STRING:Q5AB84 GeneID:3639341 GeneID:3639464 KEGG:cal:CaO19.13509
KEGG:cal:CaO19.6090 Uniprot:Q5AB84
Length = 400
Score = 212 (79.7 bits), Expect = 4.9e-15, P = 4.9e-15
Identities = 58/206 (28%), Positives = 97/206 (47%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
++P T +FVG LS I+ LK F G + R++ + T KS+GY +V F
Sbjct: 158 SKPAASTEEPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFE 217
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQS-SP 204
K+ AE A+ M G+ + R I + ST KP A K N K Y S SP
Sbjct: 218 SKSAAEKALEEMQGKEIDGRPINLDMSTGKPHAS----KSNNDRAKQ------YGDSQSP 267
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV------FKEKGYAFVKFTTKETATHA 258
+ T++ G + N + + VF +G ++ RV + KG+ +V+F++ + A A
Sbjct: 268 PSDTLFIGNLSFNANRDNLFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAA 327
Query: 259 IESIHNTDINGHTVKCFWGKESENNS 284
+E+++ I G + + +N +
Sbjct: 328 LEAMNGEYIEGRPCRLDFSTPRDNTN 353
Score = 183 (69.5 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 51/196 (26%), Positives = 86/196 (43%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXX 62
+P TL+VG L ++ + L F IG V G +VI E Y +++F
Sbjct: 166 EPATLFVGRLSWNIDDAWLKREFEHIGGVIGARVIMERATGKSRGYGYVDFESKSAAEKA 225
Query: 63 XXXMNKRVFLEKEMKVNWASSPGNQPKQ--DTSNHYH---------IFVGDLSPEIETQT 111
M + + + ++ ++ + K D + Y +F+G+LS
Sbjct: 226 LEEMQGKEIDGRPINLDMSTGKPHASKSNNDRAKQYGDSQSPPSDTLFIGNLSFNANRDN 285
Query: 112 LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNW 171
L F +G + +CR+ P T + KG+ +V F EA+ A+ AMNG+++ R R ++
Sbjct: 286 LFNVFGEYGNVISCRVPTHPDTQQPKGFGYVQFSSVDEAKAALEAMNGEYIEGRPCRLDF 345
Query: 172 STRKPPAMTNERKRQN 187
ST P TN N
Sbjct: 346 ST--PRDNTNNNNNNN 359
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 202 (76.2 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 53/177 (29%), Positives = 92/177 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXX 59
D +Q T+Y+GNLD VT+ +L L Q GPV + R+ ++ + F EF
Sbjct: 6 DRNQDATIYLGNLDEKVTDSILFELCLQAGPVVNIHIPRDRVRNSHNGFGFCEFLHEQDV 65
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N+ K ++VN AS +T ++FVG+L P ++ + L + F+
Sbjct: 66 EYACQILNQVKLFGKPIRVNRASQDRGV---NTLIGANLFVGNLDPLVDERVLYDTFSAL 122
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G++ ++ RD + +SKGY FVS+ A+ AI AMN Q+L ++ I +++ ++
Sbjct: 123 GQLVKAPQVARD-ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKR 178
Score = 41 (19.5 bits), Expect = 5.7e-15, Sum P(2) = 5.7e-15
Identities = 9/18 (50%), Positives = 10/18 (55%)
Query: 284 STLAQPSAPTTPQPNSTA 301
STL +P TP P S A
Sbjct: 208 STLPPGFSPATPAPTSAA 225
>UNIPROTKB|D4AAT0 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
TIGRFAMs:TIGR01661 IPI:IPI00392493 ProteinModelPortal:D4AAT0
Ensembl:ENSRNOT00000035262 ArrayExpress:D4AAT0 Uniprot:D4AAT0
Length = 351
Score = 174 (66.3 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 40 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 98
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 99 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 153
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 154 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 194
Score = 160 (61.4 bits), Expect = 4.2e-09, P = 4.2e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 264 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 323
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 324 MAIASLNGYRLGDRVLQVSFKTNK 347
Score = 132 (51.5 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 45 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 104
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 105 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 146
Score = 77 (32.2 bits), Expect = 6.7e-15, Sum P(2) = 6.7e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 266 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 325
Query: 259 IESIH 263
I S++
Sbjct: 326 IASLN 330
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 216 (81.1 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 70/268 (26%), Positives = 123/268 (45%)
Query: 14 NLDVSVTEELLCALFSQIGPV--KGCKVIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVF 71
N DV + + + ++SQ P K V E G+ Y F+ F MN +
Sbjct: 73 NFDV-IKGKPVRIMWSQRDPSLRKSGVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLL 131
Query: 72 LEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIV 128
++++ V S + + ++++ + +++ + LK+ F FG + +++
Sbjct: 132 NDRKVFVGRFKSRKEREAELGARAKEFTNVYIKNFGEDMDDERLKDLFGKFGPALSVKVM 191
Query: 129 RDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNS 188
D ++ KSKG+ FVSF + +A+ A+ MNG+ L + I + +K T E KR+
Sbjct: 192 TD-ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQT-ELKRKFE 249
Query: 189 HTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGY 244
K D + +Y +++E + K FSPFGTI +V E KG+
Sbjct: 250 QMKQ---DRITRYQG---VNLYVKNLDDGIDDERLRKEFSPFGTITSAKVMMEGGRSKGF 303
Query: 245 AFVKFTTKETATHAIESIHNTDINGHTV 272
FV F++ E AT A+ T++NG V
Sbjct: 304 GFVCFSSPEEATKAV-----TEMNGRIV 326
Score = 167 (63.8 bits), Expect = 5.8e-09, Sum P(2) = 5.8e-09
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 159 TNVYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 218
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 219 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 278
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 279 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 336
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 337 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 370
Score = 162 (62.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 32/79 (40%), Positives = 48/79 (60%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL P++ L E F+P G I + R+ RD T +S GYA+V+F + A+AE A+ M
Sbjct: 13 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 72
Query: 158 NGQWLGSRSIRTNWSTRKP 176
N + + +R WS R P
Sbjct: 73 NFDVIKGKPVRIMWSQRDP 91
Score = 37 (18.1 bits), Expect = 7.0e-15, Sum P(2) = 7.0e-15
Identities = 11/48 (22%), Positives = 19/48 (39%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G + A P+ T PQ
Sbjct: 431 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQ 478
>RGD|628611 [details] [associations]
symbol:Elavl2 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 2 (Hu antigen B)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 170 (64.9 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 47/160 (29%), Positives = 78/160 (48%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 149
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 139 (54.0 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 36/121 (29%), Positives = 63/121 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSK 137
N SSP + + S + + P+ TQ LK F GEI +C++VRD T +S
Sbjct: 23 NNCSSPVDSGNTEDSKTN--LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 80
Query: 138 GYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDE 197
GY FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE 140
Query: 198 V 198
+
Sbjct: 141 L 141
Score = 82 (33.9 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
Query: 259 IESIH 263
I S++
Sbjct: 334 IASLN 338
>UNIPROTKB|Q8CH84 [details] [associations]
symbol:Elavl2 "ELAV-like protein 2" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:628611 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AB098713 IPI:IPI00782044
UniGene:Rn.12662 ProteinModelPortal:Q8CH84 SMR:Q8CH84 STRING:Q8CH84
PhosphoSite:Q8CH84 UCSC:RGD:628611 InParanoid:Q8CH84 NextBio:625201
ArrayExpress:Q8CH84 Genevestigator:Q8CH84
GermOnline:ENSRNOG00000006853 Uniprot:Q8CH84
Length = 359
Score = 170 (64.9 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 47/160 (29%), Positives = 78/160 (48%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 EDSKTNLIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 149
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 155 (59.6 bits), Expect = 1.7e-08, P = 1.7e-08
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 278 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 338 NGYRLGDRVLQVSFKTNK 355
Score = 139 (54.0 bits), Expect = 3.7e-11, Sum P(2) = 3.7e-11
Identities = 36/121 (29%), Positives = 63/121 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSK 137
N SSP + + S + + P+ TQ LK F GEI +C++VRD T +S
Sbjct: 23 NNCSSPVDSGNTEDSKTN--LIDNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSL 80
Query: 138 GYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDE 197
GY FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E
Sbjct: 81 GYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKE 140
Query: 198 V 198
+
Sbjct: 141 L 141
Score = 82 (33.9 bits), Expect = 7.1e-15, Sum P(2) = 7.1e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 274 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 333
Query: 259 IESIH 263
I S++
Sbjct: 334 IASLN 338
>ZFIN|ZDB-GENE-000210-17 [details] [associations]
symbol:hug "HuG" species:7955 "Danio rerio"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-000210-17 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR550302 IPI:IPI00998450
ProteinModelPortal:F1QUX1 Ensembl:ENSDART00000122728
ArrayExpress:F1QUX1 Bgee:F1QUX1 Uniprot:F1QUX1
Length = 368
Score = 159 (61.0 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 53/208 (25%), Positives = 96/208 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP----------GND-PYAFLEFXXX 56
T L + L ++++E L +LFS IG V+ K+IR+ G+ Y F+ +
Sbjct: 56 TNLIINYLPQNMSQEELRSLFSSIGEVESAKLIRDKMAGMSAHHTLGHSLGYGFVNYVNP 115
Query: 57 XXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAF 116
+N K +KV++A +P D ++++ L + + +++ F
Sbjct: 116 SDAERAINTLNGLRLQSKTIKVSYA-----RPSSDGIKDANLYISGLPKTMTQKNVEDMF 170
Query: 117 APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS--IRTNWSTR 174
+G I N RI+ D + S+G AF+ F K++EAE AI +NG S I ++
Sbjct: 171 TQYGRIINSRILVDQASGLSRGVAFIRFDKRSEAEEAIKDLNGSKPSGASEPITVKFAAN 230
Query: 175 KPPAMTNERKRQNSHTKTITFD-EVYNQ 201
+ ++ Q HT++ F V++Q
Sbjct: 231 PNQSKNSQLLSQLYHTQSRRFGGPVHHQ 258
Score = 144 (55.7 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 32/100 (32%), Positives = 56/100 (56%)
Query: 76 MKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLK 135
M V+ + S N +S + IFV +L + + L + F PFG ++N +++RD T K
Sbjct: 267 MSVDHSVSSMNVASSSSSG-WCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSK 325
Query: 136 SKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
KG+ FV+ EA AI+++NG LG + ++ ++ + K
Sbjct: 326 CKGFGFVTMTNYEEAAMAISSLNGYRLGDKVLQVSFKSSK 365
Score = 95 (38.5 bits), Expect = 7.8e-15, Sum P(2) = 7.8e-15
Identities = 20/68 (29%), Positives = 38/68 (55%)
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETA 255
SS + ++ G+D +E ++ ++F PFG + +++V ++ KG+ FV T E A
Sbjct: 281 SSSSGWCIFVYNLGQDADEGILWQMFGPFGAVTNVKVIRDFNTSKCKGFGFVTMTNYEEA 340
Query: 256 THAIESIH 263
AI S++
Sbjct: 341 AMAISSLN 348
>UNIPROTKB|A2VDK5 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
OMA:SNSRNCP EMBL:DAAA02008922 EMBL:DAAA02008923 EMBL:BC133283
IPI:IPI00729244 RefSeq:NP_001075075.1 UniGene:Bt.26853 SMR:A2VDK5
STRING:A2VDK5 Ensembl:ENSBTAT00000028031 GeneID:535408
KEGG:bta:535408 InParanoid:A2VDK5 NextBio:20876736 Uniprot:A2VDK5
Length = 366
Score = 174 (66.3 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 42 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 155
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 160 (61.4 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 279 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 338
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 339 MAIASLNGYRLGDRVLQVSFKTNK 362
Score = 132 (51.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 148
Score = 77 (32.2 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 281 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 340
Query: 259 IESIH 263
I S++
Sbjct: 341 IASLN 345
>UNIPROTKB|J9PAL3 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1996 EMBL:AAEX03009733
RefSeq:XP_859918.1 ProteinModelPortal:J9PAL3
Ensembl:ENSCAFT00000045412 GeneID:475361 KEGG:cfa:475361
Uniprot:J9PAL3
Length = 366
Score = 174 (66.3 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 42 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 155
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 160 (61.4 bits), Expect = 4.7e-09, P = 4.7e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 279 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 338
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 339 MAIASLNGYRLGDRVLQVSFKTNK 362
Score = 132 (51.5 bits), Expect = 8.8e-10, Sum P(2) = 8.8e-10
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 148
Score = 77 (32.2 bits), Expect = 8.5e-15, Sum P(2) = 8.5e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 281 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 340
Query: 259 IESIH 263
I S++
Sbjct: 341 IASLN 345
>ASPGD|ASPL0000000406 [details] [associations]
symbol:AN6501 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001301 EMBL:AACD01000109
eggNOG:COG0724 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:XP_664105.1 ProteinModelPortal:Q5AYX9 SMR:Q5AYX9
STRING:Q5AYX9 EnsemblFungi:CADANIAT00007269 GeneID:2870231
KEGG:ani:AN6501.2 OMA:GDQAERM Uniprot:Q5AYX9
Length = 352
Score = 208 (78.3 bits), Expect = 9.0e-15, P = 9.0e-15
Identities = 52/177 (29%), Positives = 88/177 (49%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE---PGNDPYAFLEFXXXXXX 59
++ + T+Y+GNLD V++ L+ L Q G + + ++ + Y F+EF
Sbjct: 8 EQDKEATVYIGNLDERVSDSLVWELMLQAGRIVNVHLPKDRVTQSHQGYGFVEFNSEEDA 67
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
MN K ++VN AS+ ++ +FVG+L P + Q L + F+ F
Sbjct: 68 EYASRIMNGIRLYGKPIRVNKASA---DKQKSVEIGAELFVGNLDPMVTEQVLYDTFSRF 124
Query: 120 GEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G + N ++ RD L SKGY FVSF ++ AI MNGQ+L ++ + ++ +K
Sbjct: 125 GNLVNLPKVARDDSNL-SKGYGFVSFADFESSDAAIANMNGQYLMNKQVSVQYAYKK 180
>UNIPROTKB|F1NLH0 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 OMA:SNSRNCP
EMBL:AADN02012596 IPI:IPI00594347 ProteinModelPortal:F1NLH0
Ensembl:ENSGALT00000017146 Uniprot:F1NLH0
Length = 371
Score = 174 (66.3 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 47 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 160
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 161 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 160 (61.4 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 284 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 343
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 344 MAIASLNGYRLGDRVLQVSFKTNK 367
Score = 132 (51.5 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 153
Score = 77 (32.2 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 286 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 345
Query: 259 IESIH 263
I S++
Sbjct: 346 IASLN 350
>UNIPROTKB|B1APY9 [details] [associations]
symbol:ELAVL4 "cDNA FLJ50619, highly similar to ELAV-like
protein 4" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
UniGene:Hs.213050 HGNC:HGNC:3315 EMBL:AK298902 IPI:IPI00643012
SMR:B1APY9 STRING:B1APY9 Ensembl:ENST00000371819 UCSC:uc009vyu.3
Uniprot:B1APY9
Length = 371
Score = 174 (66.3 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 47 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 160
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 161 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 160 (61.4 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 284 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 343
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 344 MAIASLNGYRLGDRVLQVSFKTNK 367
Score = 132 (51.5 bits), Expect = 9.2e-10, Sum P(2) = 9.2e-10
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 153
Score = 77 (32.2 bits), Expect = 9.2e-15, Sum P(2) = 9.2e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 286 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 345
Query: 259 IESIH 263
I S++
Sbjct: 346 IASLN 350
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 210 (79.0 bits), Expect = 9.2e-15, P = 9.2e-15
Identities = 68/257 (26%), Positives = 112/257 (43%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--NDPYAFLEFXXXXXXXXXXXXMN 67
++V NLD S+ + LC +FS G V CKV R+ + Y F++F N
Sbjct: 33 VFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASGVSKGYGFVQFYSDLSVYTACNFHN 92
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRI 127
+ + + V S G K + ++V +L LK F FGEI++ +
Sbjct: 93 GTLIRNQHIHVCPFVSRGQWDKSRVFTN--VYVKNLVETATDADLKRLFGEFGEITSAVV 150
Query: 128 VRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQN 187
++D + KS+ + FV+F K A AI MNG + + + + RK T + K +
Sbjct: 151 MKDGEG-KSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNR-TEDLKAKF 208
Query: 188 SHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----K 242
K I + + +Y ++ + ++FS FGTI +V K
Sbjct: 209 ELEKIIR-----DMKTRKGMNLYVKNLDDSVDNTKLEELFSEFGTITSCKVMVHSNGISK 263
Query: 243 GYAFVKFTTKETATHAI 259
G FV+F+T E A+ A+
Sbjct: 264 GVGFVEFSTSEEASKAM 280
Score = 155 (59.6 bits), Expect = 2.2e-08, P = 2.2e-08
Identities = 50/182 (27%), Positives = 85/182 (46%)
Query: 3 DESQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXX 59
D+S+ T +YV NL + T+ L LF + G + V+++ G + F+ F
Sbjct: 113 DKSRVFTNVYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAA 172
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPK------------QD--TSNHYHIFVGDLSP 105
MN V EKE+ V A N+ + +D T +++V +L
Sbjct: 173 VTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKIIRDMKTRKGMNLYVKNLDD 232
Query: 106 EIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSR 165
++ L+E F+ FG I++C+++ + SKG FV F EA A+ MNG+ +G++
Sbjct: 233 SVDNTKLEELFSEFGTITSCKVMVHSNGI-SKGVGFVEFSTSEEASKAMLKMNGKMVGNK 291
Query: 166 SI 167
I
Sbjct: 292 PI 293
Score = 111 (44.1 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 26/94 (27%), Positives = 46/94 (48%)
Query: 74 KEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQT 133
K M++ ++ P S ++FV +L I+ + L + F+ FG++ +C++ RD
Sbjct: 12 KPMRIMFSE---RDPSNRMSGRGNVFVKNLDESIDNKQLCDMFSAFGKVLSCKVARDASG 68
Query: 134 LKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ SKGY FV F A NG + ++ I
Sbjct: 69 V-SKGYGFVQFYSDLSVYTACNFHNGTLIRNQHI 101
Score = 54 (24.1 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 17/65 (26%), Positives = 29/65 (44%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-KG----YAFVKFTTKETATHAIESIH 263
VY + + + ++F FG I V K+ +G + FV F E A AIE ++
Sbjct: 121 VYVKNLVETATDADLKRLFGEFGEITSAVVMKDGEGKSRRFGFVNFEKAEAAVTAIEKMN 180
Query: 264 NTDIN 268
++
Sbjct: 181 GVVVD 185
>RGD|1560027 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IEA;ISO;ISS] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091
eggNOG:COG0724 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996 OMA:SNSRNCP
EMBL:S83320 IPI:IPI00560167 RefSeq:NP_001071119.1 UniGene:Rn.134702
ProteinModelPortal:O09032 SMR:O09032 STRING:O09032
PhosphoSite:O09032 GeneID:432358 KEGG:rno:432358 UCSC:RGD:1560027
InParanoid:O09032 NextBio:696819 ArrayExpress:O09032
Genevestigator:O09032 GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 174 (66.3 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 148
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 160 (61.4 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 345
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 346 MAIASLNGYRLGDRVLQVSFKTNK 369
Score = 132 (51.5 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Score = 77 (32.2 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 288 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 347
Query: 259 IESIH 263
I S++
Sbjct: 348 IASLN 352
>UNIPROTKB|O09032 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 OrthoDB:EOG4JHCFV
CTD:1996 OMA:SNSRNCP EMBL:S83320 IPI:IPI00560167
RefSeq:NP_001071119.1 UniGene:Rn.134702 ProteinModelPortal:O09032
SMR:O09032 STRING:O09032 PhosphoSite:O09032 GeneID:432358
KEGG:rno:432358 UCSC:RGD:1560027 InParanoid:O09032 NextBio:696819
ArrayExpress:O09032 Genevestigator:O09032
GermOnline:ENSRNOG00000023601 Uniprot:O09032
Length = 373
Score = 174 (66.3 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 93
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 94 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 148
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 160 (61.4 bits), Expect = 4.9e-09, P = 4.9e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 286 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 345
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 346 MAIASLNGYRLGDRVLQVSFKTNK 369
Score = 132 (51.5 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 40 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 99
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 100 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
Score = 77 (32.2 bits), Expect = 9.5e-15, Sum P(2) = 9.5e-15
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 288 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 347
Query: 259 IESIH 263
I S++
Sbjct: 348 IASLN 352
>UNIPROTKB|P26378 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0006396 "RNA
processing" evidence=TAS] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 EMBL:CH471059
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0017091 GO:GO:0003730
eggNOG:COG0724 EMBL:AL645730 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661 KO:K13208 EMBL:M62843
EMBL:AY033995 EMBL:AY033996 EMBL:AY033997 EMBL:AY033998
EMBL:AK297338 EMBL:AL583843 EMBL:AL592182 EMBL:AL731870
EMBL:BC036071 IPI:IPI00395507 IPI:IPI00479625 IPI:IPI00607677
IPI:IPI00644588 IPI:IPI00978372 PIR:A40348 RefSeq:NP_001138246.1
RefSeq:NP_001138247.1 RefSeq:NP_001138248.1 RefSeq:NP_001138249.1
RefSeq:NP_068771.2 UniGene:Hs.213050 PDB:1FXL PDB:1G2E PDBsum:1FXL
PDBsum:1G2E ProteinModelPortal:P26378 SMR:P26378 IntAct:P26378
MINT:MINT-1471928 STRING:P26378 PhosphoSite:P26378 DMDM:223590202
PaxDb:P26378 PRIDE:P26378 Ensembl:ENST00000357083
Ensembl:ENST00000371823 Ensembl:ENST00000371824
Ensembl:ENST00000371827 Ensembl:ENST00000448907 GeneID:1996
KEGG:hsa:1996 UCSC:uc001crz.3 UCSC:uc001csa.3 UCSC:uc001csb.2
UCSC:uc001csc.3 CTD:1996 GeneCards:GC01P050513 HGNC:HGNC:3315
HPA:CAB004442 MIM:168360 neXtProt:NX_P26378 PharmGKB:PA27743
EvolutionaryTrace:P26378 GenomeRNAi:1996 NextBio:8073
ArrayExpress:P26378 Bgee:P26378 CleanEx:HS_ELAVL4
Genevestigator:P26378 GermOnline:ENSG00000162374 Uniprot:P26378
Length = 380
Score = 174 (66.3 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 42 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 155
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 160 (61.4 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 353 MAIASLNGYRLGDRVLQVSFKTNK 376
Score = 132 (51.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 148
Score = 77 (32.2 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 295 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 354
Query: 259 IESIH 263
I S++
Sbjct: 355 IASLN 359
>UNIPROTKB|F1LRX3 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01661 IPI:IPI00808644
Ensembl:ENSRNOT00000067007 ArrayExpress:F1LRX3 Uniprot:F1LRX3
Length = 380
Score = 174 (66.3 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 42 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 100
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 101 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 155
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 156 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 196
Score = 160 (61.4 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 293 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 352
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 353 MAIASLNGYRLGDRVLQVSFKTNK 376
Score = 132 (51.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 47 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 106
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 107 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 148
Score = 77 (32.2 bits), Expect = 1.0e-14, Sum P(2) = 1.0e-14
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 295 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 354
Query: 259 IESIH 263
I S++
Sbjct: 355 IASLN 359
>UNIPROTKB|F1P856 [details] [associations]
symbol:ELAVL4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:SNSRNCP EMBL:AAEX03009733
Ensembl:ENSCAFT00000006315 Uniprot:F1P856
Length = 382
Score = 174 (66.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 58 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 116
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 117 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 171
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 172 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 212
Score = 160 (61.4 bits), Expect = 5.2e-09, P = 5.2e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 295 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 354
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 355 MAIASLNGYRLGDRVLQVSFKTNK 378
Score = 132 (51.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 63 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 122
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 123 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 164
Score = 77 (32.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 297 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 356
Query: 259 IESIH 263
I S++
Sbjct: 357 IASLN 361
>UNIPROTKB|F1LRL1 [details] [associations]
symbol:Elavl4 "ELAV-like protein 4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:1560027 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 TIGRFAMs:TIGR01661 IPI:IPI00763452
Ensembl:ENSRNOT00000064277 ArrayExpress:F1LRL1 Uniprot:F1LRL1
Length = 384
Score = 174 (66.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 46 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 104
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 105 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 159
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 160 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 200
Score = 160 (61.4 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 297 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 356
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 357 MAIASLNGYRLGDRVLQVSFKTNK 380
Score = 132 (51.5 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 51 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 110
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 111 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 152
Score = 77 (32.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 299 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 358
Query: 259 IESIH 263
I S++
Sbjct: 359 IASLN 363
>UNIPROTKB|Q5SZ64 [details] [associations]
symbol:SF3B4 "Splicing factor 3B subunit 4" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL591493
HOVERGEN:HBG002295 HOGENOM:HOG000200535 EMBL:AL590487
UniGene:Hs.516160 HGNC:HGNC:10771 IPI:IPI00644485 SMR:Q5SZ64
MINT:MINT-1440537 STRING:Q5SZ64 Ensembl:ENST00000457312
Uniprot:Q5SZ64
Length = 190
Score = 191 (72.3 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 48/129 (37%), Positives = 72/129 (55%)
Query: 48 YAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEI 107
Y F+EF MN K ++VN AS+ N+ +N IF+G+L PEI
Sbjct: 13 YGFVEFLSEEDADYAIKIMNMIKLYGKPIRVNKASAH-NKNLDVGAN---IFIGNLDPEI 68
Query: 108 ETQTLKEAFAPFGEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS 166
+ + L + F+ FG I +I+RDP T SKGYAF++F ++ AI AMNGQ+L +R
Sbjct: 69 DEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 128
Query: 167 IRTNWSTRK 175
I +++ +K
Sbjct: 129 ITVSYAFKK 137
Score = 86 (35.3 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 18/72 (25%), Positives = 40/72 (55%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI-RVFKE------KGYAFVKFTT 251
+N++ ++ G +++E+L+ FS FG I+ ++ ++ KGYAF+ F +
Sbjct: 49 HNKNLDVGANIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFAS 108
Query: 252 KETATHAIESIH 263
+ + AIE+++
Sbjct: 109 FDASDAAIEAMN 120
Score = 67 (28.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 129 RDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+D T + +GY FV F+ + +A+ AI MN L + IR N
Sbjct: 3 KDRVTGQHQGYGFVEFLSEEDADYAIKIMNMIKLYGKPIRVN 44
>UNIPROTKB|B1APY8 [details] [associations]
symbol:ELAVL4 "ELAV-like protein 4" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AL645730 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 OrthoDB:EOG4JHCFV EMBL:AL583843 EMBL:AL592182
EMBL:AL731870 UniGene:Hs.213050 HGNC:HGNC:3315 OMA:SNSRNCP
IPI:IPI00513758 SMR:B1APY8 STRING:B1APY8 Ensembl:ENST00000371821
Uniprot:B1APY8
Length = 385
Score = 174 (66.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 47 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 160
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 161 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 160 (61.4 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 357
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 358 MAIASLNGYRLGDRVLQVSFKTNK 381
Score = 132 (51.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 153
Score = 77 (32.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 300 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 359
Query: 259 IESIH 263
I S++
Sbjct: 360 IASLN 364
>MGI|MGI:107427 [details] [associations]
symbol:Elavl4 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 4 (Hu antigen D)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 MGI:MGI:107427 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 eggNOG:COG0724 EMBL:AL627425 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 OrthoDB:EOG4JHCFV CTD:1996
EMBL:D31953 EMBL:AF041341 IPI:IPI00229977 IPI:IPI00466120
PIR:JC2298 RefSeq:NP_034618.2 UniGene:Mm.3970
ProteinModelPortal:Q61701 SMR:Q61701 STRING:Q61701
PhosphoSite:Q61701 PaxDb:Q61701 PRIDE:Q61701
Ensembl:ENSMUST00000106597 GeneID:15572 KEGG:mmu:15572
InParanoid:A2A9R7 OMA:SNSRNCP NextBio:288560 Bgee:Q61701
Genevestigator:Q61701 GermOnline:ENSMUSG00000028546 Uniprot:Q61701
Length = 385
Score = 174 (66.3 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 47 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 105
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 106 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 160
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 161 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 201
Score = 160 (61.4 bits), Expect = 5.3e-09, P = 5.3e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 298 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 357
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 358 MAIASLNGYRLGDRVLQVSFKTNK 381
Score = 132 (51.5 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 28/102 (27%), Positives = 55/102 (53%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI
Sbjct: 52 NLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINT 111
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 112 LNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 153
Score = 77 (32.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 300 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 359
Query: 259 IESIH 263
I S++
Sbjct: 360 IASLN 364
>MGI|MGI:109157 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10090 "Mus musculus"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0007275 "multicellular organismal development" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IEA] [GO:0017091
"AU-rich element binding" evidence=ISO;IDA] [GO:0030154 "cell
differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
MGI:MGI:109157 GO:GO:0007399 GO:GO:0030154 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OMA:ARRYTGP
ChiTaRS:ELAVL3 EMBL:U29148 EMBL:U29149 EMBL:BC052097
IPI:IPI00122451 IPI:IPI00222990 RefSeq:NP_034617.1
UniGene:Mm.390167 PDB:1D8Z PDB:1D9A PDB:1FNX PDBsum:1D8Z
PDBsum:1D9A PDBsum:1FNX ProteinModelPortal:Q60900 SMR:Q60900
STRING:Q60900 PhosphoSite:Q60900 PaxDb:Q60900 PRIDE:Q60900
Ensembl:ENSMUST00000003501 GeneID:15571 KEGG:mmu:15571
UCSC:uc009onl.2 UCSC:uc009onn.1 InParanoid:Q60900 OrthoDB:EOG43R3N0
EvolutionaryTrace:Q60900 NextBio:288556 Bgee:Q60900
Genevestigator:Q60900 GermOnline:ENSMUSG00000003410 Uniprot:Q60900
Length = 367
Score = 174 (66.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 46/161 (28%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T++ +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 DDSK-TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + +++ F+ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQY 148
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 149 GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 160 (61.4 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +LSPE + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
Score = 117 (46.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 105 PEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163
P+ TQ K F G+I +C++VRD T +S GY FV++ +A+ AI +NG L
Sbjct: 47 PQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ 106
Query: 164 SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+++I+ +++ ++ + + KT++ E+
Sbjct: 107 TKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEM 141
Score = 75 (31.5 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESI 262
++ + +E ++ ++F PFG + +++V ++ KG+ FV T + A AI S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 263 H 263
+
Sbjct: 346 N 346
>RGD|628892 [details] [associations]
symbol:Elavl3 "ELAV (embryonic lethal, abnormal vision,
Drosophila)-like 3 (Hu antigen C)" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017091 "AU-rich element binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 RGD:628892 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0017091 HSSP:P19339 eggNOG:COG0724 EMBL:CH473993
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 CTD:1995 OrthoDB:EOG43R3N0
EMBL:AB097198 IPI:IPI00192527 RefSeq:NP_758827.1 UniGene:Rn.22586
SMR:Q76IJ9 STRING:Q76IJ9 Ensembl:ENSRNOT00000018416 GeneID:282824
KEGG:rno:282824 UCSC:RGD:628892 InParanoid:Q76IJ9 NextBio:624869
Genevestigator:Q76IJ9 Uniprot:Q76IJ9
Length = 367
Score = 174 (66.3 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 46/161 (28%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T++ +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 DDSK-TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + +++ F+ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQY 148
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 149 GRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 160 (61.4 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +LSPE + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
Score = 117 (46.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 105 PEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163
P+ TQ K F G+I +C++VRD T +S GY FV++ +A+ AI +NG L
Sbjct: 47 PQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ 106
Query: 164 SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+++I+ +++ ++ + + KT++ E+
Sbjct: 107 TKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEM 141
Score = 75 (31.5 bits), Expect = 1.4e-14, Sum P(2) = 1.4e-14
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESI 262
++ + +E ++ ++F PFG + +++V ++ KG+ FV T + A AI S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 263 H 263
+
Sbjct: 346 N 346
>TAIR|locus:2202740 [details] [associations]
symbol:AT1G60000 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0019344 "cysteine biosynthetic process"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC005966 HOGENOM:HOG000276232 HSSP:P33240
EMBL:AF348590 EMBL:AY088142 EMBL:AK316953 IPI:IPI00532959
PIR:C96624 RefSeq:NP_176208.1 UniGene:At.17057
ProteinModelPortal:Q9ZUJ3 SMR:Q9ZUJ3 STRING:Q9ZUJ3 PRIDE:Q9ZUJ3
EnsemblPlants:AT1G60000.1 GeneID:842294 KEGG:ath:AT1G60000
TAIR:At1g60000 InParanoid:Q9ZUJ3 OMA:NVEDCNI PhylomeDB:Q9ZUJ3
ProtClustDB:CLSN2913540 ArrayExpress:Q9ZUJ3 Genevestigator:Q9ZUJ3
Uniprot:Q9ZUJ3
Length = 258
Score = 190 (71.9 bits), Expect = 1.4e-14, P = 1.4e-14
Identities = 51/173 (29%), Positives = 85/173 (49%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVI--REPGNDP-YAFLEFXXXXXXXXXXX 64
T LY GNL +V L + + +V+ R+ G +AF+
Sbjct: 85 TKLYFGNLPYNVDSATLAQIIQDFANPELVEVLYNRDTGQSRGFAFVTMSNVEDCNIIID 144
Query: 65 XMNKRVFLEKEMKVNWASSP--GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEI 122
++ +L + +KVN+A P +P + H +FVG+LS + +++L AF G++
Sbjct: 145 NLDGTEYLGRALKVNFADKPKPNKEPLYPETEH-KLFVGNLSWTVTSESLAGAFRECGDV 203
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
R+V D T +S+GY FV + KAE E A+ +++G L R+IR N + K
Sbjct: 204 VGARVVFDGDTGRSRGYGFVCYSSKAEMETALESLDGFELEGRAIRVNLAQGK 256
>ZFIN|ZDB-GENE-990415-246 [details] [associations]
symbol:elavl4 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 4 (Hu antigen D)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-990415-246 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 EMBL:CR931780 EMBL:CU467068
EMBL:CU929301 IPI:IPI00920316 ProteinModelPortal:F1R133
Ensembl:ENSDART00000134787 ArrayExpress:F1R133 Bgee:F1R133
Uniprot:F1R133
Length = 408
Score = 174 (66.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 48/161 (29%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 84 DDSK-TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDA 142
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + L++ F+ +
Sbjct: 143 EKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQY 197
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 198 GRIITSRILVDQVTGGSRGVGFIRFDKRIEAEEAIKGLNGQ 238
Score = 160 (61.4 bits), Expect = 6.0e-09, P = 6.0e-09
Identities = 32/84 (38%), Positives = 50/84 (59%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
T + IFV +LSP+ + L + F PFG ++N +++RD T K KG+ FV+ EA
Sbjct: 321 TGTGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAA 380
Query: 152 NAITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG R ++ ++ T K
Sbjct: 381 MAIASLNGYRLGDRVLQVSFKTNK 404
Score = 133 (51.9 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 30/116 (25%), Positives = 59/116 (50%)
Query: 83 SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFV 142
SP + + ++ V L + + + F GEI +C++VRD T +S GY FV
Sbjct: 75 SPMQTGGSNDDSKTNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFV 134
Query: 143 SFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 135 NYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 190
Score = 77 (32.2 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 323 TGWCIFVYNLSPDSDESVLWQLFGPFGAVNNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 382
Query: 259 IESIH 263
I S++
Sbjct: 383 IASLN 387
>GENEDB_PFALCIPARUM|PF14_0194 [details] [associations]
symbol:PF14_0194 "spliceosome-associated
protein, putative" species:5833 "Plasmodium falciparum" [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0008380 "RNA splicing"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003676 EMBL:AE014187
HSSP:P11940 KO:K12831 RefSeq:XP_001348367.1
ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0 MINT:MINT-1577513
EnsemblProtists:PF14_0194:mRNA GeneID:811775 KEGG:pfa:PF14_0194
EuPathDB:PlasmoDB:PF3D7_1420000 ProtClustDB:CLSZ2501032
Uniprot:Q8ILQ0
Length = 484
Score = 210 (79.0 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 49/176 (27%), Positives = 90/176 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFXXXXXX 59
+ + TLY+ NLD V EE+LC LF Q G VK + R+ N Y F+E+
Sbjct: 15 ERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYEC 74
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K ++ N A+ Q K+ ++F+G+L E++ + L + F+ F
Sbjct: 75 EYAANILNMTKLFGKALRCNKAT----QDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSF 130
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G+I +++R+ SKG+ F+S+ ++ AI MN Q++ ++ + +++ +K
Sbjct: 131 GQIMTVKVMRNEDDT-SKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKK 185
>UNIPROTKB|Q8ILQ0 [details] [associations]
symbol:PF14_0194 "Spliceosome-associated protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0005681 "spliceosomal
complex" evidence=ISS] [GO:0008380 "RNA splicing" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0008380 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003676 EMBL:AE014187 HSSP:P11940 KO:K12831
RefSeq:XP_001348367.1 ProteinModelPortal:Q8ILQ0 IntAct:Q8ILQ0
MINT:MINT-1577513 EnsemblProtists:PF14_0194:mRNA GeneID:811775
KEGG:pfa:PF14_0194 EuPathDB:PlasmoDB:PF3D7_1420000
ProtClustDB:CLSZ2501032 Uniprot:Q8ILQ0
Length = 484
Score = 210 (79.0 bits), Expect = 1.5e-14, P = 1.5e-14
Identities = 49/176 (27%), Positives = 90/176 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFXXXXXX 59
+ + TLY+ NLD V EE+LC LF Q G VK + R+ N Y F+E+
Sbjct: 15 ERNNEATLYIANLDAQVDEEILCELFMQCGNVKNVHIPRDKINGYHAGYGFVEYEYEYEC 74
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K ++ N A+ Q K+ ++F+G+L E++ + L + F+ F
Sbjct: 75 EYAANILNMTKLFGKALRCNKAT----QDKRSFDVGANLFIGNLDDEVDEKMLFDIFSSF 130
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
G+I +++R+ SKG+ F+S+ ++ AI MN Q++ ++ + +++ +K
Sbjct: 131 GQIMTVKVMRNEDDT-SKGHGFISYDNFESSDLAIENMNNQFICNKKVHISYAFKK 185
>UNIPROTKB|F1SA16 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:CU855518
Ensembl:ENSSSCT00000014872 Uniprot:F1SA16
Length = 367
Score = 172 (65.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/161 (28%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T++ +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 DDSK-TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + +++ F+ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQY 148
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 162 (62.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 34/91 (37%), Positives = 52/91 (57%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
G P + + IFV +LSPE + L + F PFG ++N +++RD T K KG+ FV+
Sbjct: 273 GVGPVRGCGGGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTM 332
Query: 145 VKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG R ++ ++ T K
Sbjct: 333 TNYDEAAMAIASLNGYRLGERVLQVSFKTSK 363
Score = 117 (46.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 105 PEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163
P+ TQ K F G+I +C++VRD T +S GY FV++ +A+ AI +NG L
Sbjct: 47 PQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ 106
Query: 164 SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+++I+ +++ ++ + + KT++ E+
Sbjct: 107 TKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEM 141
Score = 75 (31.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESI 262
++ + +E ++ ++F PFG + +++V ++ KG+ FV T + A AI S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 263 H 263
+
Sbjct: 346 N 346
Score = 37 (18.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 5/7 (71%), Positives = 7/7 (100%)
Query: 31 IGPVKGC 37
+GPV+GC
Sbjct: 274 VGPVRGC 280
>UNIPROTKB|F1PVV1 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:AAEX03012413
Ensembl:ENSCAFT00000027494 Uniprot:F1PVV1
Length = 367
Score = 172 (65.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/161 (28%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T++ +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 DDSK-TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + +++ F+ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQY 148
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 160 (61.4 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +LSPE + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
Score = 117 (46.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 105 PEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163
P+ TQ K F G+I +C++VRD T +S GY FV++ +A+ AI +NG L
Sbjct: 47 PQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ 106
Query: 164 SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+++I+ +++ ++ + + KT++ E+
Sbjct: 107 TKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEM 141
Score = 75 (31.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESI 262
++ + +E ++ ++F PFG + +++V ++ KG+ FV T + A AI S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 263 H 263
+
Sbjct: 346 N 346
>UNIPROTKB|Q14576 [details] [associations]
symbol:ELAVL3 "ELAV-like protein 3" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399
"nervous system development" evidence=IEA] [GO:0030154 "cell
differentiation" evidence=IEA] [GO:0017091 "AU-rich element
binding" evidence=IDA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0007399 GO:GO:0030154
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 eggNOG:COG0724
HOVERGEN:HBG002295 HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
KO:K13208 EMBL:L26405 EMBL:AY036909 EMBL:AC008481 EMBL:BC014144
EMBL:D26158 IPI:IPI00031552 IPI:IPI00140449 RefSeq:NP_001411.2
RefSeq:NP_115657.2 UniGene:Hs.1701 ProteinModelPortal:Q14576
SMR:Q14576 IntAct:Q14576 MINT:MINT-1471958 STRING:Q14576
PhosphoSite:Q14576 DMDM:21264436 PaxDb:Q14576 PRIDE:Q14576
Ensembl:ENST00000359227 Ensembl:ENST00000438662 GeneID:1995
KEGG:hsa:1995 UCSC:uc002mrx.1 UCSC:uc002mry.1 CTD:1995
GeneCards:GC19M011562 HGNC:HGNC:3314 HPA:CAB013066 MIM:603458
neXtProt:NX_Q14576 PharmGKB:PA27742 InParanoid:Q14576 OMA:ARRYTGP
PhylomeDB:Q14576 ChiTaRS:ELAVL3 GenomeRNAi:1995 NextBio:8067
ArrayExpress:Q14576 Bgee:Q14576 CleanEx:HS_ELAVL3
Genevestigator:Q14576 GermOnline:ENSG00000196361 Uniprot:Q14576
Length = 367
Score = 172 (65.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/161 (28%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T++ +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 DDSK-TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + +++ F+ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQY 148
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 160 (61.4 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +LSPE + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 346 NGYRLGERVLQVSFKTSK 363
Score = 117 (46.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 105 PEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163
P+ TQ K F G+I +C++VRD T +S GY FV++ +A+ AI +NG L
Sbjct: 47 PQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ 106
Query: 164 SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+++I+ +++ ++ + + KT++ E+
Sbjct: 107 TKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEM 141
Score = 75 (31.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESI 262
++ + +E ++ ++F PFG + +++V ++ KG+ FV T + A AI S+
Sbjct: 286 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 345
Query: 263 H 263
+
Sbjct: 346 N 346
>UNIPROTKB|F1N4V6 [details] [associations]
symbol:ELAVL3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017091 "AU-rich element binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0017091 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP EMBL:DAAA02019487
IPI:IPI00710891 Ensembl:ENSBTAT00000019169 Uniprot:F1N4V6
Length = 368
Score = 172 (65.6 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 46/161 (28%), Positives = 81/161 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T++ +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 DDSK-TNLIVNYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDA 93
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + +++ F+ +
Sbjct: 94 DKAINTLNGLKLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMSQKEMEQLFSQY 148
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 149 GRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 160 (61.4 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +LSPE + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 347 NGYRLGERVLQVSFKTSK 364
Score = 117 (46.2 bits), Expect = 7.6e-08, Sum P(2) = 7.6e-08
Identities = 27/95 (28%), Positives = 52/95 (54%)
Query: 105 PEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLG 163
P+ TQ K F G+I +C++VRD T +S GY FV++ +A+ AI +NG L
Sbjct: 47 PQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQ 106
Query: 164 SRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+++I+ +++ ++ + + KT++ E+
Sbjct: 107 TKTIKVSYARPSSASIRDANLYVSGLPKTMSQKEM 141
Score = 75 (31.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 15/61 (24%), Positives = 33/61 (54%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESI 262
++ + +E ++ ++F PFG + +++V ++ KG+ FV T + A AI S+
Sbjct: 287 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 346
Query: 263 H 263
+
Sbjct: 347 N 347
>TAIR|locus:2122009 [details] [associations]
symbol:RBP31 "AT4G24770" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS;IDA;TAS]
[GO:0009507 "chloroplast" evidence=ISM;IDA] [GO:0009579 "thylakoid"
evidence=IDA] [GO:0009941 "chloroplast envelope" evidence=IDA]
[GO:0009535 "chloroplast thylakoid membrane" evidence=IDA]
[GO:0009570 "chloroplast stroma" evidence=IDA] [GO:0045087 "innate
immune response" evidence=IDA] [GO:0008266 "poly(U) RNA binding"
evidence=IDA] [GO:0009451 "RNA modification" evidence=IMP]
[GO:0009073 "aromatic amino acid family biosynthetic process"
evidence=RCA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
[GO:0016226 "iron-sulfur cluster assembly" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0045036
"protein targeting to chloroplast" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0009631 "cold acclimation" evidence=IMP] [GO:0016553 "base
conversion or substitution editing" evidence=IMP] [GO:0043489 "RNA
stabilization" evidence=IMP] [GO:0006396 "RNA processing"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0009570 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0008266 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 GO:GO:0009631
GO:GO:0016553 GO:GO:0006396 GO:GO:0030529 EMBL:AL035356
EMBL:AL161562 GO:GO:0009535 eggNOG:COG0724 HOGENOM:HOG000276232
EMBL:M94554 EMBL:X65255 EMBL:U08467 EMBL:D31712 EMBL:D31713
IPI:IPI00523699 IPI:IPI00542634 IPI:IPI00760320 PIR:S28057
PIR:S53492 RefSeq:NP_194208.1 UniGene:At.38112 UniGene:At.70990
ProteinModelPortal:Q04836 SMR:Q04836 STRING:Q04836 PaxDb:Q04836
PRIDE:Q04836 ProMEX:Q04836 EnsemblPlants:AT4G24770.1 GeneID:828579
KEGG:ath:AT4G24770 GeneFarm:4009 TAIR:At4g24770 InParanoid:Q04836
OMA:NRYDLNG PhylomeDB:Q04836 ProtClustDB:CLSN2915857
Genevestigator:Q04836 GermOnline:AT4G24770 GO:GO:0043489
Uniprot:Q04836
Length = 329
Score = 203 (76.5 bits), Expect = 2.5e-14, P = 2.5e-14
Identities = 50/181 (27%), Positives = 91/181 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXX 59
+ S+ L+VGNL V + L LF Q G V+ +VI D + F+
Sbjct: 145 EPSEEAKLFVGNLAYDVNSQALAMLFEQAGTVEIAEVIYNRETDQSRGFGFVTMSSVDEA 204
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNH---YHIFVGDLSPEIETQTLKEAF 116
N+ + + VN A+ G++P++ + + ++VG+L +++ L++ F
Sbjct: 205 ETAVEKFNRYDLNGRLLTVNKAAPRGSRPERAPRVYEPAFRVYVGNLPWDVDNGRLEQLF 264
Query: 117 APFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176
+ G++ R+V D +T +S+G+ FV+ E AI+A++GQ L R+IR N + +P
Sbjct: 265 SEHGKVVEARVVYDRETGRSRGFGFVTMSDVDELNEAISALDGQNLEGRAIRVNVAEERP 324
Query: 177 P 177
P
Sbjct: 325 P 325
>ZFIN|ZDB-GENE-980526-76 [details] [associations]
symbol:elavl3 "ELAV (embryonic lethal, abnormal
vision, Drosophila)-like 3 (Hu antigen C)" species:7955 "Danio
rerio" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-980526-76 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 HOVERGEN:HBG002295
HOGENOM:HOG000231162 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:ARRYTGP OrthoDB:EOG43R3N0
EMBL:CR385086 EMBL:BC065343 IPI:IPI00512421 UniGene:Dr.75060
SMR:Q6P105 STRING:Q6P105 Ensembl:ENSDART00000028610
InParanoid:Q6P105 Uniprot:Q6P105
Length = 359
Score = 167 (63.8 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 47/162 (29%), Positives = 81/162 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXX 59
D+S+ T L V L ++T+E +LF IG ++ CK++R+ G Y F+ +
Sbjct: 34 DDSK-TNLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDA 92
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A P + +D + ++V L + + +++ F+ +
Sbjct: 93 DKAINTLNGLKLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMSQKDMEQLFSQY 147
Query: 120 GEISNCRIVRDPQTLK-SKGYAFVSFVKKAEAENAITAMNGQ 160
G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 148 GRIITSRILVDQVTAGISRGVGFIRFDKRNEAEEAIKGLNGQ 189
Score = 160 (61.4 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 32/78 (41%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +LSPE + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 278 IFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASL 337
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 338 NGYRLGDRVLQVSFKTSK 355
Score = 127 (49.8 bits), Expect = 1.5e-09, Sum P(2) = 1.5e-09
Identities = 25/76 (32%), Positives = 45/76 (59%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++ V L + + K F GEI +C++VRD T +S GY FV++V +A+ AI
Sbjct: 39 NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINT 98
Query: 157 MNGQWLGSRSIRTNWS 172
+NG L +++I+ +++
Sbjct: 99 LNGLKLQTKTIKVSYA 114
Score = 80 (33.2 bits), Expect = 2.7e-14, Sum P(2) = 2.7e-14
Identities = 18/72 (25%), Positives = 37/72 (51%)
Query: 200 NQSSPTNC--TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTT 251
N + PT ++ + +E ++ ++F PFG + +++V ++ KG+ FV T
Sbjct: 267 NLTGPTGAGWCIFVYNLSPEADESVLWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTN 326
Query: 252 KETATHAIESIH 263
+ A AI S++
Sbjct: 327 YDEAAMAIASLN 338
Score = 73 (30.8 bits), Expect = 7.9e-09, Sum P(2) = 7.9e-09
Identities = 20/82 (24%), Positives = 40/82 (48%)
Query: 190 TKTITFDEVYNQS-SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------- 241
TKTI S S + +Y G K ++++ + ++FS +G I+ R+ +
Sbjct: 106 TKTIKVSYARPSSASIRDANLYVSGLPKTMSQKDMEQLFSQYGRIITSRILVDQVTAGIS 165
Query: 242 KGYAFVKFTTKETATHAIESIH 263
+G F++F + A AI+ ++
Sbjct: 166 RGVGFIRFDKRNEAEEAIKGLN 187
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 202 (76.2 bits), Expect = 3.5e-14, P = 3.5e-14
Identities = 67/266 (25%), Positives = 120/266 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+L VTE +L FS GP+ +V R+ YA++ F
Sbjct: 12 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDVATRRSLGYAYINFQQPADAERALDT 71
Query: 66 MNKRVFLEKEMKVNWAS-SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
MN + + +++ W+ PG + K N IF+ +L I+ + L + F+ FG I +
Sbjct: 72 MNFEMLKGQPIRIMWSQRDPGLR-KSGVGN---IFIKNLEDSIDNKALYDTFSTFGNILS 127
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRT-NWSTRKPPAMTNER 183
C++ D S+G+ FV F A+ AI MNG L R + ++ +R+ ER
Sbjct: 128 CKVACDEHG--SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRR------ER 179
Query: 184 KRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
+ + + + F +Y ++ P + G +DL + K+ S ++ +
Sbjct: 180 EAELG-ARALEFTNIYVKNLPVDVDEQ--GL-QDLFSQF-GKMLSV--KVMRDNSGHSRC 232
Query: 244 YAFVKFTTKETATHAIESIHNTDING 269
+ FV F E A A+ ++ +++G
Sbjct: 233 FGFVNFEKHEEAQKAVVHMNGKEVSG 258
Score = 182 (69.1 bits), Expect = 9.4e-12, P = 9.4e-12
Identities = 54/237 (22%), Positives = 109/237 (45%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVI-REPGNDPYAFLEFXXXXXXXXXXXXMNK 68
+++ NL+ S+ + L FS G + CKV E G+ + F+ F MN
Sbjct: 101 IFIKNLEDSIDNKALYDTFSTFGNILSCKVACDEHGSRGFGFVHFETHEAAQQAINTMNG 160
Query: 69 RVFLEKEMKVNWASSPGNQPKQ---DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+ ++++ V S + + +I+V +L +++ Q L++ F+ FG++ +
Sbjct: 161 MLLNDRKVFVGHFKSRREREAELGARALEFTNIYVKNLPVDVDEQGLQDLFSQFGKMLSV 220
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
+++RD + S+ + FV+F K EA+ A+ MNG+ + R + +K NE KR
Sbjct: 221 KVMRD-NSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAG-RAQKRVERQNELKR 278
Query: 186 QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
+ K D + +Y ++++ + K FSP+G I + +++
Sbjct: 279 RFEQMKQ---DRLRRYQG---VNLYVKNLDDSIDDDKLRKEFSPYGVITSAKKRRQR 329
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 196 (74.1 bits), Expect = 5.4e-14, P = 5.4e-14
Identities = 62/241 (25%), Positives = 110/241 (45%)
Query: 39 VIREPGNDPYAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQ---DTSNH 95
V E G+ Y F+ F MN + ++++ V S + +
Sbjct: 3 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGARAKEF 62
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
++++ + +++ + LK+ F P + +++ D ++ KSKG+ FVSF + +A+ A+
Sbjct: 63 TNVYIKNFGEDMDDERLKDLFGPALSV---KVMTD-ESGKSKGFGFVSFERHEDAQKAVD 118
Query: 156 AMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFG 215
MNG+ L + I + +K T E KR+ K D + +Y
Sbjct: 119 EMNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQ---DRITRYQG---VNLYVKNLD 171
Query: 216 KDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHNTDINGHT 271
+++E + K FSPFGTI +V E KG+ FV F++ E AT A+ T++NG
Sbjct: 172 DGIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TEMNGRI 226
Query: 272 V 272
V
Sbjct: 227 V 227
Score = 153 (58.9 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 54/215 (25%), Positives = 100/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF GP KV+ E G + F+ F
Sbjct: 63 TNVYIKNFGEDMDDERLKDLF---GPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 119
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 120 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 179
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 180 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 237
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 238 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 271
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 204 (76.9 bits), Expect = 7.1e-14, P = 7.1e-14
Identities = 54/180 (30%), Positives = 92/180 (51%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++++ + +++ + LKE F FG + +++ D ++ KSKG+ FVSF + +A+ A+
Sbjct: 24 NVYIKNFGEDMDDERLKELFGKFGPALSVKVMTD-ESGKSKGFGFVSFERHEDAQKAVDE 82
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGK 216
MNG+ L + I + +K T E KR+ K D + +Y
Sbjct: 83 MNGKELNGKQIYVGRAQKKVERQT-ELKRKFEQMKQ---DRITRYQG---VNLYVKNLDD 135
Query: 217 DLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIHNTDINGHTV 272
+++E + K FSPFGTI +V E KG+ FV F++ E AT A+ T++NG V
Sbjct: 136 GIDDERLRKEFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAV-----TEMNGRIV 190
Score = 168 (64.2 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 54/215 (25%), Positives = 101/215 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIR-EPGNDP-YAFLEFXXXXXXXXXXXX 65
T +Y+ N + +E L LF + GP KV+ E G + F+ F
Sbjct: 23 TNVYIKNFGEDMDDERLKELFGKFGPALSVKVMTDESGKSKGFGFVSFERHEDAQKAVDE 82
Query: 66 MN------KRVFLEK-EMKVNWASS---PGNQPKQDTSNHY---HIFVGDLSPEIETQTL 112
MN K++++ + + KV + Q KQD Y +++V +L I+ + L
Sbjct: 83 MNGKELNGKQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQGVNLYVKNLDDGIDDERL 142
Query: 113 KEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
++ F+PFG I++ +++ + +SKG+ FV F EA A+T MNG+ + ++ + +
Sbjct: 143 RKEFSPFGTITSAKVMMEGG--RSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALA 200
Query: 173 TRKPPA---MTNERKRQNSHTKTITFDEVYNQSSP 204
RK +TN+ ++ + + + + V N P
Sbjct: 201 QRKEERQAHLTNQYMQRMASVRAVP-NPVINPYQP 234
Score = 42 (19.8 bits), Expect = 5.8e-10, Sum P(2) = 5.8e-10
Identities = 12/48 (25%), Positives = 20/48 (41%)
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQ 296
F+T A+ + + +T +T G +T A P+ T PQ
Sbjct: 296 FSTMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAATAATPAVRTVPQ 343
>UNIPROTKB|G4NH06 [details] [associations]
symbol:MGG_03973 "Splicing factor 3B subunit 4"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 KO:K12831 RefSeq:XP_003719883.1
EnsemblFungi:MGG_03973T0 GeneID:2677428 KEGG:mgr:MGG_03973
Uniprot:G4NH06
Length = 407
Score = 202 (76.2 bits), Expect = 8.3e-14, P = 8.3e-14
Identities = 56/179 (31%), Positives = 95/179 (53%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXX 59
++++ T+YVGNLD E L+ + +Q+GPV + + + Y F+EF
Sbjct: 7 EQNKEATVYVGNLDERFGEALMWEMMTQMGPVVNLHMPMDRVSRTHQGYGFVEFDTPESA 66
Query: 60 XXXXXXMNK-RVFLEKEMKVNWASSPGNQPKQDTSN-HYHIFVGDLSPEIETQTLKEAFA 117
+N RVF K ++VN AS+ KQ T+ +FV +L P+++ + L + F+
Sbjct: 67 DYAARALNGIRVF-GKVIRVNKASAD----KQKTAEIGAELFVNNLDPQVDEKILFDTFS 121
Query: 118 PFGE-ISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
FG+ ++ +VRD + SKGY FV+F ++ A MNGQ+L S+ I ++ +K
Sbjct: 122 RFGQLVTPPNVVRDANNI-SKGYGFVNFDSFEASDTARDTMNGQYLLSKQITVEYAYKK 179
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 137 (53.3 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 27/61 (44%), Positives = 40/61 (65%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL P++ L E F+P G I + R+ RD T +S GYA+V+F + A+AE A+ M
Sbjct: 8 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 67
Query: 158 N 158
N
Sbjct: 68 N 68
Score = 75 (31.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 16/32 (50%), Positives = 18/32 (56%)
Query: 136 SKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
SKGY FV F + AE AI MNG L R +
Sbjct: 84 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKV 115
Score = 75 (31.5 bits), Expect = 2.0e-07, Sum P(3) = 2.0e-07
Identities = 26/85 (30%), Positives = 37/85 (43%)
Query: 5 SQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXX 60
S P +LYVG+L VTE +L FS GP+ +V R+ + YA++ F
Sbjct: 2 SYPMASLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAE 61
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPG 85
MN V K + + S G
Sbjct: 62 RALDTMNFDVIKGKPVVCDENGSKG 86
Score = 67 (28.6 bits), Expect = 9.7e-14, Sum P(2) = 9.7e-14
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 242 KGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGK 278
KGY FV F T+E A AIE ++ +N K F G+
Sbjct: 85 KGYGFVHFETQEAAERAIEKMNGMLLNDR--KVFVGR 119
Score = 63 (27.2 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 10/34 (29%), Positives = 21/34 (61%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK 242
VY FG+D+++E + +F FG + ++V ++
Sbjct: 140 VYIKNFGEDMDDERLKDLFGKFGPALSVKVMTDE 173
>ZFIN|ZDB-GENE-040426-960 [details] [associations]
symbol:rbm28 "RNA binding motif protein 28"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040426-960 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 HOGENOM:HOG000124666 HOVERGEN:HBG073213 EMBL:BX901876
IPI:IPI00499330 UniGene:Dr.78227 ProteinModelPortal:Q1LV83
SMR:Q1LV83 STRING:Q1LV83 ArrayExpress:Q1LV83 Uniprot:Q1LV83
Length = 865
Score = 180 (68.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 58/223 (26%), Positives = 99/223 (44%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
P + N + + + +LS + E LK+ F+ FG + RI P K KG+AFV F
Sbjct: 117 PTKKKENGW-LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDG-KKKGFAFVQFKCV 174
Query: 148 AEAENAITAMNGQWLGSRSIRTNWSTRKP----PAMTNERKRQNSHTKTITFDEVYNQSS 203
+EAE A AMN + + R + +W+T P T E + T T F +
Sbjct: 175 SEAEKARAAMNRKAIRDRPVEVDWTTSNTESADPEDTEEPHKAEETTSTEKFKGIRKIKL 234
Query: 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV-----FKEKGYAFVKFTTKETATHA 258
+ + F E+ + ++FS FGT+++ ++ K++G+AFV F A A
Sbjct: 235 KSRLIIRNLSF--KCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKA 292
Query: 259 IESIHNTDINGHTVKCFWGKESENN-STLAQPSAPTTPQPNST 300
+ +++ I V W + +T + +A + N T
Sbjct: 293 LTAMNGKKIKDRQVAVDWAIAKDKYLATQSASAAGNIKEENVT 335
Score = 131 (51.2 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 50/215 (23%), Positives = 97/215 (45%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+FV L + L E F+ G + NC +V D + K +G+ +V+F + +A+ A+ +
Sbjct: 6 LFVRRLPETASNEHLAEIFSEIGPLKNCFVVCDKEK-KCRGFGYVTFSMEDDAQRALKEV 64
Query: 158 ---NGQ--WLGSRSIRTNWSTRKPPAMTN------ERKRQNSHTKTITFDEVYNQSSPT- 205
+ Q ++ + + RK A TN E +++ TK +E+ + +
Sbjct: 65 KLYDDQKIFVTVAKKKLDDKKRKKNAKTNKDSGDTEESQKSGETKNT--EEIPSPTKKKE 122
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV-----FKEKGYAFVKFTTKETATHAIE 260
N + ++ + ++FS FGT+++ R+ K+KG+AFV+F A A
Sbjct: 123 NGWLIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARA 182
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTP 295
+++ I V+ W + +N+ A P P
Sbjct: 183 AMNRKAIRDRPVEVDW---TTSNTESADPEDTEEP 214
Score = 118 (46.6 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 35/111 (31%), Positives = 51/111 (45%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
N D + IF+ +LS + E + L+E FGE+S R+V +P T SKG AF F
Sbjct: 429 NPLPSDVNEGRTIFIRNLSFDSEEEGLEEVLLQFGELSYVRVVMNPDTGVSKGCAFAQFK 488
Query: 146 KKAEAENAITA------MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHT 190
K AE I A +G L R + + + A + K+ +HT
Sbjct: 489 SKEAAEKCIAAALDEKEFSGIKLDGRRLNILMAINRDDAAKFKDKKVKTHT 539
Score = 76 (31.8 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 17/76 (22%), Positives = 36/76 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXXMN 67
L + NL ++ L +FS+ G V ++ +P +AF++F MN
Sbjct: 126 LIIRNLSFKCEDDELKQIFSKFGTVLETRIPLKPDGKKKGFAFVQFKCVSEAEKARAAMN 185
Query: 68 KRVFLEKEMKVNWASS 83
++ ++ ++V+W +S
Sbjct: 186 RKAIRDRPVEVDWTTS 201
Score = 72 (30.4 bits), Expect = 1.2e-13, Sum P(2) = 1.2e-13
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVI 40
TL+V L + + E L +FS+IGP+K C V+
Sbjct: 5 TLFVRRLPETASNEHLAEIFSEIGPLKNCFVV 36
Score = 71 (30.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 19/74 (25%), Positives = 33/74 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXXXXXXXMN 67
L + NL E+ L +FS+ G V K+ +P +AF+ F MN
Sbjct: 238 LIIRNLSFKCEEDDLKQIFSEFGTVLEAKIPLKPDGKKRGFAFVLFKRMPEAGKALTAMN 297
Query: 68 KRVFLEKEMKVNWA 81
+ ++++ V+WA
Sbjct: 298 GKKIKDRQVAVDWA 311
Score = 51 (23.0 bits), Expect = 3.7e-08, Sum P(3) = 3.7e-08
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 243 GYAFVKFTTKETATHAIESIHNT-DING 269
GY FV+F E A A+ ++N DI G
Sbjct: 644 GYGFVEFQEHEHAIQALRHLNNNPDIFG 671
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 204 (76.9 bits), Expect = 1.4e-13, P = 1.4e-13
Identities = 66/268 (24%), Positives = 116/268 (43%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDP-YAFLEFXXXXXXXXXXXXMN 67
L+V NLD SV + L FS G + CKV + G Y F++F +N
Sbjct: 136 LFVKNLDKSVDNKTLHEAFSGCGTIVSCKVATDHMGQSRGYGFVQFDTEDSAKNAIEKLN 195
Query: 68 KRVFLEKEMKVN-WASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCR 126
+V +K++ V + + D +++V +LS LK F +G IS+
Sbjct: 196 GKVLNDKQIFVGPFLRKEERESAADKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAV 255
Query: 127 IVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ 186
++RD KS+ + FV+F +A A+ A+NG+ + W K + ER+ +
Sbjct: 256 VMRDGDG-KSRCFGFVNFENPEDAARAVEALNGKKFDDKE----WYVGKAQKKS-ERELE 309
Query: 187 NSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----- 241
S + N+ N +Y + +E + ++F+ FGTI +V ++
Sbjct: 310 LSRRYEQGSSDGGNKFDGLN--LYVKNLDDTVTDEKLRELFAEFGTITSCKVMRDPSGTS 367
Query: 242 KGYAFVKFTTKETATHAIESIHNTDING 269
KG FV F+ A+ + ++ + G
Sbjct: 368 KGSGFVAFSAASEASRVLNEMNGKMVGG 395
Score = 195 (73.7 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 67/260 (25%), Positives = 118/260 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXX 65
+LYVG+LD +VT+ L F+++ V +V R+ + Y ++ +
Sbjct: 47 SLYVGDLDFNVTDSQLYDYFTEVCQVVSVRVCRDAATNTSLGYGYVNYSNTDDAEKAMQK 106
Query: 66 MNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNC 125
+N K +++ ++S + + N +FV +L ++ +TL EAF+ G I +C
Sbjct: 107 LNYSYLNGKMIRITYSSRDSSARRSGVGN---LFVKNLDKSVDNKTLHEAFSGCGTIVSC 163
Query: 126 RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKR 185
++ D +S+GY FV F + A+NAI +NG+ L + I P + E +R
Sbjct: 164 KVATDHMG-QSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVG------PFLRKE-ER 215
Query: 186 QNSHTKTITFDEVY--NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG 243
+++ K + F VY N S T FG+ + S V G K +
Sbjct: 216 ESAADK-MKFTNVYVKNLSEATTDDELKTTFGQ--YGSISSAVVMRDGD------GKSRC 266
Query: 244 YAFVKFTTKETATHAIESIH 263
+ FV F E A A+E+++
Sbjct: 267 FGFVNFENPEDAARAVEALN 286
Score = 187 (70.9 bits), Expect = 1.3e-11, P = 1.3e-11
Identities = 52/188 (27%), Positives = 87/188 (46%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDP-YAFLEFXXXXXXX 60
D+ + T +YV NL + T++ L F Q G + V+R+ G + F+ F
Sbjct: 220 DKMKFTNVYVKNLSEATTDDELKTTFGQYGSISSAVVMRDGDGKSRCFGFVNFENPEDAA 279
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGN----------QPKQDTSNHY---HIFVGDLSPEI 107
+N + F +KE V A Q D N + +++V +L +
Sbjct: 280 RAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQGSSDGGNKFDGLNLYVKNLDDTV 339
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ L+E FA FG I++C+++RDP SKG FV+F +EA + MNG+ +G + +
Sbjct: 340 TDEKLRELFAEFGTITSCKVMRDPSGT-SKGSGFVAFSAASEASRVLNEMNGKMVGGKPL 398
Query: 168 RTNWSTRK 175
+ RK
Sbjct: 399 YVALAQRK 406
>TAIR|locus:2100840 [details] [associations]
symbol:AT3G04500 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC022287 eggNOG:NOG306795
HSSP:O08583 HOGENOM:HOG000239273 EMBL:BT005571 EMBL:AK118315
IPI:IPI00527216 RefSeq:NP_187100.1 UniGene:At.40828
ProteinModelPortal:Q9M837 SMR:Q9M837 PaxDb:Q9M837 PRIDE:Q9M837
EnsemblPlants:AT3G04500.1 GeneID:819606 KEGG:ath:AT3G04500
TAIR:At3g04500 InParanoid:Q9M837 OMA:SNWRERT PhylomeDB:Q9M837
ProtClustDB:CLSN2684283 ArrayExpress:Q9M837 Genevestigator:Q9M837
Uniprot:Q9M837
Length = 245
Score = 181 (68.8 bits), Expect = 1.5e-13, P = 1.5e-13
Identities = 37/104 (35%), Positives = 59/104 (56%)
Query: 94 NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENA 153
N Y +F GDL E+ L +AFA F + +++RD +T K+KGY FVSF+ A+ A
Sbjct: 135 NDYRLFCGDLGNEVNDDVLSKAFARFPTFNMAKVIRDKRTGKTKGYGFVSFLNPADLAAA 194
Query: 154 ITAMNGQWLGSRSIR---TNWSTRKPP-AMTNERKRQNSHTKTI 193
+ MNG+++G+R I+ ++W R A ++ N KT+
Sbjct: 195 LKEMNGKYVGNRPIKLRKSSWKERTDQEAAERQKHHSNKKQKTV 238
>DICTYBASE|DDB_G0292472 [details] [associations]
symbol:DDB_G0292472 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0292472 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000190 eggNOG:NOG321849 RefSeq:XP_629639.1
ProteinModelPortal:Q54D57 EnsemblProtists:DDB0184418 GeneID:8628703
KEGG:ddi:DDB_G0292472 InParanoid:Q54D57 OMA:ANINFAF Uniprot:Q54D57
Length = 550
Score = 151 (58.2 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 33/112 (29%), Positives = 57/112 (50%)
Query: 48 YAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEI 107
Y F++F +N K +KV++A + +Q S H ++++ L P +
Sbjct: 154 YGFVKFSKKDEAAMAIEQLNGFEVDSKPLKVSYAQASSSQ-----STHANLYINRLEPHV 208
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNG 159
LKE F FG++ + +I+ DP T S+ FV F ++ EA A+++MNG
Sbjct: 209 TNANLKEVFGSFGDVIDTKILTDPDTGASRCVGFVHFSQRREALKAVSSMNG 260
Score = 72 (30.4 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 17/89 (19%), Positives = 44/89 (49%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAI 259
N + ++ ++ +++E + K+F+ FG I +++ G A + + +T +AI
Sbjct: 445 NNNIMSSFPIHISNLPNNIDETFLYKLFA-FGAISGVQLLNN-GQAIITYLDYQTVQNAI 502
Query: 260 ESIHNTDINGHTVK--CFWGKESENNSTL 286
+++ I+G ++K C N++ +
Sbjct: 503 NTLNGKIISGRSLKVVCLTNSSPSNDNNM 531
Score = 61 (26.5 bits), Expect = 2.5e-13, Sum P(3) = 2.5e-13
Identities = 13/41 (31%), Positives = 23/41 (56%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVI---REPGN 45
T L V N+ S+ L +LF + G ++ CK++ ++ GN
Sbjct: 82 TNLIVNNIPKSMDSNELKSLFDKFGEIESCKIVFNRKKDGN 122
>UNIPROTKB|G4MY43 [details] [associations]
symbol:MGG_01268 "Nuclear localization sequence binding
protein" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001232 KO:K11294 RefSeq:XP_003714181.1
ProteinModelPortal:G4MY43 EnsemblFungi:MGG_01268T0 GeneID:2679652
KEGG:mgr:MGG_01268 Uniprot:G4MY43
Length = 486
Score = 198 (74.8 bits), Expect = 3.9e-13, P = 3.9e-13
Identities = 56/198 (28%), Positives = 94/198 (47%)
Query: 83 SPGNQPKQDTSNHYH-IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
+P + K + S+ +FVG+LS ++ L E F G +++ R++ D ++ +SKG+ +
Sbjct: 225 APAKKTKTEESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGY 284
Query: 142 VSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQ 201
V F EAE A G ++ R I+ ++ST K TN + K D V
Sbjct: 285 VDFATPEEAEKAHGEKQGAFIDGREIKVDFSTGKA---TNSNDAAGARAKKYG-DTV--- 337
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETA 255
SP + T++ G D +E+ V FS + +R+ E KG+ +V F + E A
Sbjct: 338 -SPESDTLFVGNLPFDADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDA 396
Query: 256 THAIESIHNTDINGHTVK 273
A E ++ ING +
Sbjct: 397 KSAFEQLNGQSINGRNCR 414
Score = 169 (64.5 bits), Expect = 8.1e-10, P = 8.1e-10
Identities = 48/191 (25%), Positives = 99/191 (51%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVI--REPGNDP-YAFLEFXXXXXX 59
+ +P+TL+VGNL +V + +L F G V +VI RE G + +++F
Sbjct: 234 ESDKPSTLFVGNLSWNVDDAMLAEEFKFCGTVTSARVITDRESGRSKGFGYVDFATPEEA 293
Query: 60 XXXXXXMNKRVFLE-KEMKVNWAS--------SPGNQPKQ--DTSNHYH--IFVGDLSPE 106
+ F++ +E+KV++++ + G + K+ DT + +FVG+L +
Sbjct: 294 EKAHGE-KQGAFIDGREIKVDFSTGKATNSNDAAGARAKKYGDTVSPESDTLFVGNLPFD 352
Query: 107 IETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS 166
+ ++ F+ E+ + R+ + ++ + KG+ +V+F +A++A +NGQ + R+
Sbjct: 353 ADEDSVGAFFSEVAEVKSLRLPTEQESGRRKGFGYVTFNSVEDAKSAFEQLNGQSINGRN 412
Query: 167 IRTNWSTRKPP 177
R ++ST +PP
Sbjct: 413 CRLDYSTPRPP 423
>UNIPROTKB|B1AM48 [details] [associations]
symbol:ELAVL2 "ELAV-like protein 2" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 HOVERGEN:HBG002295 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 EMBL:AL161628 EMBL:AL445623 UniGene:Hs.166109
HGNC:HGNC:3313 OrthoDB:EOG4JHCFV IPI:IPI00184721 SMR:B1AM48
Ensembl:ENST00000440102 Uniprot:B1AM48
Length = 189
Score = 177 (67.4 bits), Expect = 4.1e-13, P = 4.1e-13
Identities = 48/160 (30%), Positives = 79/160 (49%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
E T L V L ++T+E L +LF IG ++ CK++R+ G Y F+ +
Sbjct: 35 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 94
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
+N K +KV++A P + +D + ++V L + + L++ F+ +G
Sbjct: 95 KAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTMTQKELEQLFSQYG 149
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 150 RIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 189
Score = 145 (56.1 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 35/120 (29%), Positives = 63/120 (52%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N SSP + + S ++ V L + + LK F GEI +C++VRD T +S G
Sbjct: 23 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGQSLG 81
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
Y FV+++ +AE AI +NG L +++I+ +++ ++ + + KT+T E+
Sbjct: 82 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDANLYVSGLPKTMTQKEL 141
>FB|FBgn0260400 [details] [associations]
symbol:elav "embryonic lethal abnormal vision" species:7227
"Drosophila melanogaster" [GO:0005634 "nucleus" evidence=IDA;TAS]
[GO:0015030 "Cajal body" evidence=IDA] [GO:0007417 "central nervous
system development" evidence=IMP] [GO:0016070 "RNA metabolic
process" evidence=NAS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0007399 "nervous system development" evidence=NAS] [GO:0008266
"poly(U) RNA binding" evidence=IDA] [GO:0031441 "negative
regulation of mRNA 3'-end processing" evidence=IDA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 EMBL:AL022139
GO:GO:0007417 GO:GO:0009790 GO:GO:0007281 GO:GO:0015030
GO:GO:0000900 GO:GO:0031441 GO:GO:0007319 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 KO:K13208 EMBL:M21152 EMBL:AY051822
PIR:A33130 RefSeq:NP_001014713.1 RefSeq:NP_001138142.1
RefSeq:NP_001245447.1 RefSeq:NP_525033.1 UniGene:Dm.4473
ProteinModelPortal:P16914 SMR:P16914 DIP:DIP-23700N IntAct:P16914
MINT:MINT-1597597 STRING:P16914 PaxDb:P16914 PRIDE:P16914
EnsemblMetazoa:FBtr0070091 EnsemblMetazoa:FBtr0307173 GeneID:31000
KEGG:dme:Dmel_CG4262 CTD:31000 FlyBase:FBgn0260400 eggNOG:NOG256997
InParanoid:Q7K7L9 OMA:DIGESKT PhylomeDB:P16914 GenomeRNAi:31000
NextBio:771397 Bgee:P16914 GermOnline:CG4262 Uniprot:P16914
Length = 483
Score = 173 (66.0 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 34/80 (42%), Positives = 50/80 (62%)
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
Y IF+ +L+PE E L + F PFG + + +IV+DP T + KGY FVS EA AI
Sbjct: 402 YPIFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIR 461
Query: 156 AMNGQWLGSRSIRTNWSTRK 175
A+NG +G+R ++ ++ T K
Sbjct: 462 ALNGYTMGNRVLQVSFKTNK 481
Score = 153 (58.9 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 48/169 (28%), Positives = 78/169 (46%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DP-------------YAFL 51
T L V L ++TE+ + +LFS +G ++ K+IR+ DP Y F+
Sbjct: 149 TNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRDKSQVYIDPLNPQAPSKGQSLGYGFV 208
Query: 52 EFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQT 111
+ +N K +KV++A +P D +++V L + Q
Sbjct: 209 NYVRPQDAEQAVNVLNGLRLQNKTIKVSFA-----RPSSDAIKGANLYVSGLPKTMTQQE 263
Query: 112 LKEAFAPFGEISNCRIVRDP-QTLKSKGYAFVSFVKKAEAENAITAMNG 159
L+ FAPFG I RI+++ ++KG F+ F K+ EA AI A+NG
Sbjct: 264 LEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREEATRAIIALNG 312
Score = 121 (47.7 bits), Expect = 0.00019, P = 0.00019
Identities = 50/230 (21%), Positives = 91/230 (39%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N S N T ++ V L + ++ F+ GEI + +++RD KS+
Sbjct: 132 NAGSGSQNGSNGSTETRTNLIVNYLPQTMTEDEIRSLFSSVGEIESVKLIRD----KSQV 187
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIR--TNWSTRKPPAMTNERKRQNSHTKTITFD 196
Y + N GQ LG + + + N + QN K ++F
Sbjct: 188 YI--------DPLNPQAPSKGQSLGYGFVNYVRPQDAEQAVNVLNGLRLQNKTIK-VSFA 238
Query: 197 EVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-------KGYAFVKF 249
+ + +Y G K + ++ + +F+PFG I+ R+ + KG F++F
Sbjct: 239 RP-SSDAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRF 297
Query: 250 TTKETATHAIESIHNTDINGHT--VKCFWGKESENNSTLAQPSAPTTPQP 297
+E AT AI +++ T + T + + + S + QP P P
Sbjct: 298 DKREEATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSKIIQPQLPAFLNP 347
Score = 74 (31.1 bits), Expect = 1.8e-11, Sum P(2) = 1.8e-11
Identities = 18/70 (25%), Positives = 34/70 (48%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIESI 262
++ + E + ++F PFG + +++ K+ KGY FV T + A AI ++
Sbjct: 404 IFIYNLAPETEEAALWQLFGPFGAVQSVKIVKDPTTNQCKGYGFVSMTNYDEAAMAIRAL 463
Query: 263 HNTDINGHTV 272
NG+T+
Sbjct: 464 -----NGYTM 468
Score = 66 (28.3 bits), Expect = 5.4e-13, Sum P(2) = 5.4e-13
Identities = 20/93 (21%), Positives = 40/93 (43%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYA----FLEFXXXXX 58
D + LYV L ++T++ L A+F+ G + ++++ GND F+ F
Sbjct: 243 DAIKGANLYVSGLPKTMTQQELEAIFAPFGAIITSRILQNAGNDTQTKGVGFIRFDKREE 302
Query: 59 XXXXXXXMNKRV--FLEKEMKVNWASSPGNQPK 89
+N + V ++++PG+ K
Sbjct: 303 ATRAIIALNGTTPSSCTDPIVVKFSNTPGSTSK 335
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 175 (66.7 bits), Expect = 6.8e-13, P = 6.8e-13
Identities = 44/178 (24%), Positives = 90/178 (50%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D + ++FV ++ +I+ + LKE F +G + +++RD KSKG+ FV +
Sbjct: 29 RDRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASG-KSKGFGFVRYETHEA 87
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTV 209
A+ A+ ++G+ + + + + +K + R+R + + E +S P +
Sbjct: 88 AQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRR----FERLRLKE---KSRPPGVPI 140
Query: 210 YCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETATHAIESIH 263
Y + +N+E + + FS FG+I +V E KG+ V F++ E AT A++ ++
Sbjct: 141 YIKNLDETINDEKLKEEFSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEATKAVDEMN 198
Score = 121 (47.7 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 41/180 (22%), Positives = 76/180 (42%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFXXXXXXX 60
D + T ++V N+ + +E L LF + GP + KVIR+ + F+ +
Sbjct: 30 DRATFTNVFVKNIGDDIDDEKLKELFCEYGPTESVKVIRDASGKSKGFGFVRYETHEAAQ 89
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQ-------------PKQDTSNHYHIFVGDLSPEI 107
++ + K + V A + ++ I++ +L I
Sbjct: 90 KAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRFERLRLKEKSRPPGVPIYIKNLDETI 149
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSI 167
+ LKE F+ FG IS +++ + + KG+ V F EA A+ MNG+ +GS+ +
Sbjct: 150 NDEKLKEEFSSFGSISRAKVMMEVG--QGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPL 207
>UNIPROTKB|F1MN26 [details] [associations]
symbol:F1MN26 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00690000101901 GO:GO:0005689 EMBL:DAAA02057528
IPI:IPI00686039 Ensembl:ENSBTAT00000013961 OMA:ITVSHAF
Uniprot:F1MN26
Length = 398
Score = 194 (73.4 bits), Expect = 6.9e-13, P = 6.9e-13
Identities = 61/176 (34%), Positives = 87/176 (49%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---G-NDPYAFLEFXXXXXXX 60
+Q +YVG D V E LL LF Q G V + ++ G + Y F+EF
Sbjct: 10 NQDAAVYVGGPDEKVREPLLWELFLQAGLVVNTNMAKDSVTVGQHQGYGFVEFLSGKNAD 69
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
MN K +VN AS+ + K D + IF+G+L P+I + L + F+ FG
Sbjct: 70 YAIKIMNMIKRYGKPTRVNKASA--HSKKLDVGAN--IFIGNLDPQIG-KLLYDTFSTFG 124
Query: 121 EISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
I RI+R+P T SKGYAF+ FV + AI AMN Q+L + I + + +K
Sbjct: 125 VILQTPRIMRNPDTGNSKGYAFIHFVSCDVVDAAIKAMNRQYLCNHLITVSHAFKK 180
>UNIPROTKB|F1SNK9 [details] [associations]
symbol:ELAVL2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01661
GeneTree:ENSGT00560000077064 OMA:RAVENGP EMBL:AEMK01195641
EMBL:CU407236 Ensembl:ENSSSCT00000005656 Uniprot:F1SNK9
Length = 400
Score = 155 (59.6 bits), Expect = 3.1e-12, Sum P(2) = 3.1e-12
Identities = 30/78 (38%), Positives = 48/78 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFV +L+P+ + L + F PFG ++N +++RD T K KG+ FV+ EA AI ++
Sbjct: 319 IFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMAIASL 378
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG LG R ++ ++ T K
Sbjct: 379 NGYRLGDRVLQVSFKTNK 396
Score = 118 (46.6 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 32/113 (28%), Positives = 54/113 (47%)
Query: 48 YAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEI 107
Y F+ + +N K +KV++A P + +D + ++V L +
Sbjct: 122 YGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR-PSSASIRDAN----LYVSGLPKTM 176
Query: 108 ETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
+ L++ F+ +G I RI+ D T S+G F+ F K+ EAE AI +NGQ
Sbjct: 177 TQKELEQLFSQYGRIITSRILVDQVTGISRGVGFIRFDKRIEAEEAIKGLNGQ 229
Score = 117 (46.2 bits), Expect = 0.00040, P = 0.00040
Identities = 47/204 (23%), Positives = 80/204 (39%)
Query: 79 NWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
N SSP + + S ++ V L + + LK F GEI +C++VRD T
Sbjct: 33 NNCSSPVDSGNTEDSKT-NLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRDKITGNQFR 91
Query: 139 YAFVS---FVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMT-NERKRQNSHTKTIT 194
F F K ++ + + W N+ K N TKTI
Sbjct: 92 EYFTDSSLFEKWRPLDSEVIVLGKGWQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIK 151
Query: 195 FDEVYNQS-SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFV 247
S S + +Y G K + ++ + ++FS +G I+ R+ + +G F+
Sbjct: 152 VSYARPSSASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGISRGVGFI 211
Query: 248 KFTTKETATHAIESIHNTDINGHT 271
+F + A AI+ ++ G T
Sbjct: 212 RFDKRIEAEEAIKGLNGQKPPGAT 235
Score = 82 (33.9 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 17/65 (26%), Positives = 34/65 (52%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
T ++ D +E ++ ++F PFG + +++V ++ KG+ FV T + A A
Sbjct: 315 TGWCIFVYNLAPDADESILWQMFGPFGAVTNVKVIRDFNTNKCKGFGFVTMTNYDEAAMA 374
Query: 259 IESIH 263
I S++
Sbjct: 375 IASLN 379
Score = 76 (31.8 bits), Expect = 1.3e-12, Sum P(3) = 1.3e-12
Identities = 15/39 (38%), Positives = 24/39 (61%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE 42
E T L V L ++T+E L +LF IG ++ CK++R+
Sbjct: 45 EDSKTNLIVNYLPQNMTQEELKSLFGSIGEIESCKLVRD 83
>WB|WBGene00001368 [details] [associations]
symbol:exc-7 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0002064 "epithelial cell development"
evidence=IMP] [GO:0035150 "regulation of tube size" evidence=IMP]
[GO:0016607 "nuclear speck" evidence=IDA] InterPro:IPR000504
InterPro:IPR002343 InterPro:IPR006548 InterPro:IPR012677
Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 GO:GO:0016607 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0002064 eggNOG:COG0724 HOGENOM:HOG000231162
TIGRFAMs:TIGR01661 HSSP:P26378 GeneTree:ENSGT00560000077064
OMA:DIGESKT GO:GO:0035150 EMBL:Z36752 PIR:T21822 RefSeq:NP_496057.1
ProteinModelPortal:Q20084 SMR:Q20084 DIP:DIP-27011N IntAct:Q20084
MINT:MINT-1038844 STRING:Q20084 PaxDb:Q20084 EnsemblMetazoa:F35H8.5
GeneID:174506 KEGG:cel:CELE_F35H8.5 CTD:174506 WormBase:F35H8.5
InParanoid:Q20084 NextBio:884320 Uniprot:Q20084
Length = 456
Score = 193 (73.0 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 65/244 (26%), Positives = 107/244 (43%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXXXX 60
ES+ T L + L +T+E + +LF+ IG ++ CK++R+ G Y F+ +
Sbjct: 39 ESK-TNLIINYLPQGMTQEEVRSLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVREEDAL 97
Query: 61 XXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N K +KV++A +P D +++V + + L+ F PFG
Sbjct: 98 RAVSSFNGLRLQNKTIKVSYA-----RPSNDQIKGSNLYVSGIPKSMTLHELESIFRPFG 152
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRS------IRTNWSTR 174
+I RI+ D T SKG FV F KK EA+ AI +NG S N ++
Sbjct: 153 QIITSRILSDNVTGLSKGVGFVRFDKKDEADVAIKTLNGSIPSGCSEQITVKFANNPASN 212
Query: 175 KPPAMTNERKR-QNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKV-FSPFGT 232
P + ++ + Q + T + + +PT GG G + + SK +SP G
Sbjct: 213 NPKGLLSDLEAVQQAATTLVPLSTILG--APT-LRATAGGIGPMHHAPITSKYRYSPMGA 269
Query: 233 IVDI 236
I +
Sbjct: 270 ITAV 273
Score = 142 (55.0 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 35/96 (36%), Positives = 54/96 (56%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
AS P DT+ Y +FV +LS + + L + F+ FG I N +I+RD T + KGYA
Sbjct: 360 ASVAATLPPSDTAG-YCLFVYNLSSDTDDTLLWQLFSQFGAIVNVKILRD-LTQQCKGYA 417
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176
FVS EA NA+ ++NG L ++++ + + P
Sbjct: 418 FVSMSNYTEAYNAMLSLNGTNLAGKTLQVVFKSSTP 453
Score = 107 (42.7 bits), Expect = 0.00070, Sum P(2) = 0.00070
Identities = 29/110 (26%), Positives = 54/110 (49%)
Query: 173 TRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTV-YC---GGFGKDLNEELVSKVFS 228
T PPA + +H + + P + T YC D ++ L+ ++FS
Sbjct: 336 TASPPATNGQVAGLAAHAQLSALSASVAATLPPSDTAGYCLFVYNLSSDTDDTLLWQLFS 395
Query: 229 PFGTIVDIRVFKE-----KGYAFVKFTTKETATHAIESIHNTDINGHTVK 273
FG IV++++ ++ KGYAFV + A +A+ S++ T++ G T++
Sbjct: 396 QFGAIVNVKILRDLTQQCKGYAFVSMSNYTEAYNAMLSLNGTNLAGKTLQ 445
Score = 50 (22.7 bits), Expect = 8.1e-08, Sum P(2) = 8.1e-08
Identities = 19/93 (20%), Positives = 41/93 (44%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXX 59
D+ + + LYV + S+T L ++F G + +++ + G + F+ F
Sbjct: 123 DQIKGSNLYVSGIPKSMTLHELESIFRPFGQIITSRILSDNVTGLSKGVGFVRFDKKDEA 182
Query: 60 XXXXXXMNKRV--FLEKEMKVNWASSPG-NQPK 89
+N + +++ V +A++P N PK
Sbjct: 183 DVAIKTLNGSIPSGCSEQITVKFANNPASNNPK 215
>FB|FBgn0024987 [details] [associations]
symbol:ssx "sister-of-Sex-lethal" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0042742 "defense response to bacterium"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:AE014298 GO:GO:0042742
GO:GO:0003729 Gene3D:3.30.70.330 HSSP:P19339 EMBL:AL023893
SMR:O76876 IntAct:O76876 MINT:MINT-315293 STRING:O76876
UCSC:CG3056-RA FlyBase:FBgn0024987 eggNOG:NOG321849
InParanoid:O76876 OrthoDB:EOG4M37RG NextBio:771866 Uniprot:O76876
Length = 485
Score = 193 (73.0 bits), Expect = 1.5e-12, P = 1.5e-12
Identities = 51/159 (32%), Positives = 80/159 (50%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGND-PYAFLEFXXXXXX 59
D + T L + L +T+ L LFS GP+ CK++R+ G Y F+++
Sbjct: 88 DRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFKTGYSFGYGFVDYKTESDS 147
Query: 60 XXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
+N K +KV++A PG Q +DT+ ++V +LS I L F+P+
Sbjct: 148 EDAIQKLNGFYVRNKRLKVSYAR-PGGQSIKDTN----LYVINLSRNINDDMLDRIFSPY 202
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158
G I I+RD T + +G AFV + K+ EA+ AI A+N
Sbjct: 203 GLIVQRNILRDKLTGRPRGVAFVRYNKREEAQEAIKALN 241
Score = 112 (44.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 24/100 (24%), Positives = 55/100 (55%)
Query: 73 EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQ 132
+ E N A + D ++ ++ + L ++ + L F+ G I+ C+I+RD +
Sbjct: 70 DNEGNDNSAGQQQQMQQVDRTSATNLIINYLPQDMTDRELYNLFSGCGPINTCKIMRDFK 129
Query: 133 TLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWS 172
T S GY FV + ++++E+AI +NG ++ ++ ++ +++
Sbjct: 130 TGYSFGYGFVDYKTESDSEDAIQKLNGFYVRNKRLKVSYA 169
Score = 108 (43.1 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 28/105 (26%), Positives = 58/105 (55%)
Query: 186 QNSHTKTITFDEVYNQS-SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK-- 242
+N K +++ QS TN +Y +++N++++ ++FSP+G IV + ++K
Sbjct: 160 RNKRLK-VSYARPGGQSIKDTN--LYVINLSRNINDDMLDRIFSPYGLIVQRNILRDKLT 216
Query: 243 ----GYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESENN 283
G AFV++ +E A AI++++NT G + + W + +E +
Sbjct: 217 GRPRGVAFVRYNKREEAQEAIKALNNTVPEGGS-QPIWVRLAEEH 260
>UNIPROTKB|E9PQ56 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
IPI:IPI00985156 ProteinModelPortal:E9PQ56 SMR:E9PQ56
Ensembl:ENST00000526459 ArrayExpress:E9PQ56 Bgee:E9PQ56
Uniprot:E9PQ56
Length = 323
Score = 188 (71.2 bits), Expect = 1.6e-12, P = 1.6e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 113 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 172
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 173 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 218
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 219 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 278
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 279 LRV--GKAVTPPMPLLTPATP 297
Score = 178 (67.7 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 113 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 172
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 173 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 232
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 233 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 292
Query: 180 T 180
T
Sbjct: 293 T 293
Score = 117 (46.2 bits), Expect = 0.00027, P = 0.00027
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 111 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 170
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 171 QMNSVMLGGRNIKV--GRPS--NIGQAQP 195
>UNIPROTKB|H0YEM1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AC105219 EMBL:AC105049
InterPro:IPR006532 TIGRFAMs:TIGR01645 HGNC:HGNC:17042
Ensembl:ENST00000527744 Uniprot:H0YEM1
Length = 336
Score = 188 (71.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 129 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 188
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 189 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 234
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 235 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 294
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 295 LRV--GKAVTPPMPLLTPATP 313
Score = 178 (67.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 129 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 188
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 189 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 248
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 249 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 308
Query: 180 T 180
T
Sbjct: 309 T 309
Score = 117 (46.2 bits), Expect = 0.00029, P = 0.00029
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 127 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 186
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 187 QMNSVMLGGRNIKV--GRPS--NIGQAQP 211
>TAIR|locus:2157702 [details] [associations]
symbol:CP31B "chloroplast RNA-binding protein 31B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0009507
"chloroplast" evidence=ISM;IDA] [GO:0009941 "chloroplast envelope"
evidence=IDA] [GO:0045087 "innate immune response" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0009570
"chloroplast stroma" evidence=IDA] [GO:0009451 "RNA modification"
evidence=IMP] [GO:0000023 "maltose metabolic process" evidence=RCA]
[GO:0006098 "pentose-phosphate shunt" evidence=RCA] [GO:0009409
"response to cold" evidence=RCA] [GO:0009697 "salicylic acid
biosynthetic process" evidence=RCA] [GO:0009814 "defense response,
incompatible interaction" evidence=RCA] [GO:0010027 "thylakoid
membrane organization" evidence=RCA] [GO:0019252 "starch
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0019684 "photosynthesis, light reaction"
evidence=RCA] [GO:0042742 "defense response to bacterium"
evidence=RCA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0009570 GO:GO:0008266 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0045087 GO:GO:0009941 EMBL:AB024031
eggNOG:COG0724 GO:GO:0009451 HOGENOM:HOG000276232 HSSP:P11940
ProtClustDB:CLSN2915857 UniGene:At.46085 UniGene:At.7917
EMBL:AY039868 EMBL:AY077660 IPI:IPI00537317 RefSeq:NP_199836.1
ProteinModelPortal:Q9FGS0 SMR:Q9FGS0 STRING:Q9FGS0 PaxDb:Q9FGS0
PRIDE:Q9FGS0 EnsemblPlants:AT5G50250.1 GeneID:835090
KEGG:ath:AT5G50250 TAIR:At5g50250 InParanoid:Q9FGS0 OMA:AAFRIYV
PhylomeDB:Q9FGS0 Genevestigator:Q9FGS0 Uniprot:Q9FGS0
Length = 289
Score = 185 (70.2 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 47/167 (28%), Positives = 83/167 (49%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFXXXXXXXXXXXXM 66
L+VGNL V + L LF Q G V+ +VI D + F+
Sbjct: 115 LFVGNLPYDVDSQALAMLFEQAGTVEISEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEKF 174
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQDTSNH---YHIFVGDLSPEIETQTLKEAFAPFGEIS 123
N + + VN A+ G++P++ + + I+VG+L ++++ L+ F+ G++
Sbjct: 175 NSFEVNGRRLTVNRAAPRGSRPERQPRVYDAAFRIYVGNLPWDVDSGRLERLFSEHGKVV 234
Query: 124 NCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTN 170
+ R+V D +T +S+G+ FV + E AI A++GQ L R+I+ N
Sbjct: 235 DARVVSDRETGRSRGFGFVQMSNENEVNVAIAALDGQNLEGRAIKVN 281
>UNIPROTKB|F1NA97 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00630000089747 InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:AADN02016569 EMBL:AADN02016570 EMBL:AADN02016571
EMBL:AADN02016572 EMBL:AADN02016573 EMBL:AADN02016574
IPI:IPI00596858 Ensembl:ENSGALT00000036523 ArrayExpress:F1NA97
Uniprot:F1NA97
Length = 366
Score = 188 (71.2 bits), Expect = 2.7e-12, P = 2.7e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 147
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 148 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 193
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 194 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 253
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 254 LRV--GKAVTPPMPLLTPATP 272
Score = 178 (67.7 bits), Expect = 3.9e-11, P = 3.9e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 88 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 147
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 148 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 207
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 208 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 267
Query: 180 T 180
T
Sbjct: 268 T 268
Score = 117 (46.2 bits), Expect = 0.00034, P = 0.00034
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 86 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 145
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 146 QMNSVMLGGRNIKV--GRPS--NIGQAQP 170
>ZFIN|ZDB-GENE-030131-2891 [details] [associations]
symbol:puf60a "poly-U binding splicing factor a"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR003954 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 SMART:SM00361
ZFIN:ZDB-GENE-030131-2891 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 EMBL:BX323559 IPI:IPI00919560
Ensembl:ENSDART00000056645 ArrayExpress:F1QZ57 Bgee:F1QZ57
Uniprot:F1QZ57
Length = 538
Score = 191 (72.3 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 57/201 (28%), Positives = 96/201 (47%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D TLK KG+AFV + A+ A+ M
Sbjct: 95 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQM 154
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y D
Sbjct: 155 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHPD 200
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ ++A A+ S++ D+ G
Sbjct: 201 LSDDDIKSVFEAFGRIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQY 260
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 261 LRV--GKAVTPPMPLLTPATP 279
Score = 187 (70.9 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 48/181 (26%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 95 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALEQM 154
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + P++ +K F FG
Sbjct: 155 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHPDLSDDDIKSVFEAFG 214
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
I +C + RDP T K KGY F+ + K A++A+++MN LG + +R + P P +
Sbjct: 215 RIKSCSLARDPTTGKHKGYGFIEYDKAQSAQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 274
Query: 180 T 180
T
Sbjct: 275 T 275
Score = 117 (46.2 bits), Expect = 0.00063, P = 0.00063
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 93 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTLKHKGFAFVEYEVPEAAQLALE 152
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 153 QMNSVMLGGRNIKV--GRPS--NIGQAQP 177
>FB|FBgn0264270 [details] [associations]
symbol:Sxl "Sex lethal" species:7227 "Drosophila
melanogaster" [GO:0048024 "regulation of mRNA splicing, via
spliceosome" evidence=NAS;TAS] [GO:0019099 "female germ-line sex
determination" evidence=TAS] [GO:0007549 "dosage compensation"
evidence=NAS;TAS] [GO:0019101 "female somatic sex determination"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008187 "poly-pyrimidine tract binding" evidence=IDA]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=TAS] [GO:0007541 "sex determination, primary response to
X:A ratio" evidence=NAS;TAS] [GO:0048477 "oogenesis" evidence=TAS]
[GO:0030237 "female sex determination" evidence=NAS] [GO:0007131
"reciprocal meiotic recombination" evidence=TAS] [GO:0018993
"somatic sex determination" evidence=NAS;TAS] [GO:0003729 "mRNA
binding" evidence=ISS;TAS] [GO:0007530 "sex determination"
evidence=NAS;TAS] [GO:0008266 "poly(U) RNA binding" evidence=IDA]
[GO:0007281 "germ cell development" evidence=TAS] [GO:0007548 "sex
differentiation" evidence=NAS;TAS] [GO:0017148 "negative regulation
of translation" evidence=IMP;IDA;NAS;TAS] [GO:0048027 "mRNA 5'-UTR
binding" evidence=IDA;TAS] [GO:0000900 "translation repressor
activity, nucleic acid binding" evidence=TAS] [GO:0000380
"alternative mRNA splicing, via spliceosome" evidence=TAS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IDA] [GO:0007224 "smoothened signaling pathway"
evidence=IDA] [GO:0008083 "growth factor activity" evidence=IDA]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0009994
"oocyte differentiation" evidence=IDA] [GO:0043234 "protein
complex" evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006546
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0043234 GO:GO:0008266
GO:GO:0006355 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0048027 GO:GO:0003730 GO:GO:0007281
GO:GO:0008083 GO:GO:0007548 GO:GO:0007224 GO:GO:0007131
GO:GO:0009994 GO:GO:0000900 GO:GO:0048025 GO:GO:0019099
GO:GO:0000380 GO:GO:0007541 GO:GO:0007446 GO:GO:0007549
GO:GO:0019101 GeneTree:ENSGT00560000077064 EMBL:M23635 EMBL:M23636
EMBL:M59447 EMBL:M59448 EMBL:BT003583 EMBL:BT099922 EMBL:BT100240
EMBL:BT120392 EMBL:S88324 EMBL:D84425 PIR:A31639 PIR:A39725
RefSeq:NP_001027062.1 RefSeq:NP_001027063.1 RefSeq:NP_001027064.1
RefSeq:NP_001027065.1 RefSeq:NP_001027066.1 RefSeq:NP_001162686.1
RefSeq:NP_001162687.1 RefSeq:NP_001162688.1 RefSeq:NP_001162689.1
RefSeq:NP_001162690.1 RefSeq:NP_001162691.1 RefSeq:NP_001245559.1
RefSeq:NP_524791.3 RefSeq:NP_727160.2 RefSeq:NP_727161.2
RefSeq:NP_727162.2 RefSeq:NP_727163.2 RefSeq:NP_727164.2
RefSeq:NP_727165.2 RefSeq:NP_727166.2 RefSeq:NP_727167.2
RefSeq:NP_727168.1 UniGene:Dm.4502 PDB:1B7F PDB:1SXL PDB:2SXL
PDB:3SXL PDBsum:1B7F PDBsum:1SXL PDBsum:2SXL PDBsum:3SXL
ProteinModelPortal:P19339 SMR:P19339 IntAct:P19339 MINT:MINT-276991
STRING:P19339 PaxDb:P19339 PRIDE:P19339 EnsemblMetazoa:FBtr0331255
EnsemblMetazoa:FBtr0331262 EnsemblMetazoa:FBtr0331268
GeneID:3772180 KEGG:dme:Dmel_CG18350 CTD:3772180
FlyBase:FBgn0003659 eggNOG:NOG249299 InParanoid:P19339 OMA:HRDGAME
OrthoDB:EOG4F4QSS EvolutionaryTrace:P19339 NextBio:852740
Bgee:P19339 GermOnline:CG18350 TIGRFAMs:TIGR01659 Uniprot:P19339
Length = 354
Score = 187 (70.9 bits), Expect = 3.1e-12, P = 3.1e-12
Identities = 50/154 (32%), Positives = 78/154 (50%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGND-PYAFLEFXXXXXXXXXXX 64
T L V L +T+ L ALF IGP+ C+++R+ G YAF++F
Sbjct: 125 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIK 184
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
+N K +KV++A PG + +DT+ ++V +L I L F +G I
Sbjct: 185 VLNGITVRNKRLKVSYAR-PGGESIKDTN----LYVTNLPRTITDDQLDTIFGKYGSIVQ 239
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158
I+RD T + +G AFV + K+ EA+ AI+A+N
Sbjct: 240 KNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273
Score = 125 (49.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 30/113 (26%), Positives = 59/113 (52%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
N P+ +N + V L ++ + L F G I+ CRI+RD +T S GYAFV F
Sbjct: 118 NDPRASNTN---LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFT 174
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEV 198
+ +++ AI +NG + ++ ++ +++ ++ + + +TIT D++
Sbjct: 175 SEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDTNLYVTNLPRTITDDQL 227
Score = 74 (31.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 15/62 (24%), Positives = 33/62 (53%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAIESI 262
+Y + + ++ + +F +G+IV + ++K G AFV++ +E A AI ++
Sbjct: 213 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 272
Query: 263 HN 264
+N
Sbjct: 273 NN 274
>UNIPROTKB|Q1RMJ7 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724 GO:GO:0001514
GeneTree:ENSGT00510000047100 EMBL:BC114858 IPI:IPI00693783
RefSeq:NP_001069435.1 UniGene:Bt.19750 ProteinModelPortal:Q1RMJ7
SMR:Q1RMJ7 PRIDE:Q1RMJ7 Ensembl:ENSBTAT00000013718 GeneID:532582
KEGG:bta:532582 CTD:54952 HOGENOM:HOG000234338 HOVERGEN:HBG056959
InParanoid:Q1RMJ7 OMA:EDPTPQL OrthoDB:EOG44BB34 NextBio:20875741
Uniprot:Q1RMJ7
Length = 287
Score = 183 (69.5 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 68/246 (27%), Positives = 114/246 (46%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIREPGND-P--YAFLEFXXXXXXXXXXX 64
+L++G+L+ + E + F+ +G V K+IR P Y F+EF
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 65 XMNKRVFL----EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-F 119
+N + K K+N+A+ G QP D S Y +FVGDL+P+++ L E F +
Sbjct: 64 KINGKPLPGATPAKRFKLNYATY-GKQP--DNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ-WLGSRSIRTNWSTRKPPA 178
++V D QT SKGY FV F + E + A+T G LGS+ +R + + P
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAIGLGSKPVRLSVAI---PK 176
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIR 237
+ + + S + ++++ Y Q N Y +G D N S + +G T ++
Sbjct: 177 ASRVKPVEYSQMYSYSYNQYYQQYQ--N---YYAQWGYDQNTGSYSYSYPQYGYTQSTMQ 231
Query: 238 VFKEKG 243
++E G
Sbjct: 232 TYEEVG 237
>UNIPROTKB|E2QV44 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0005634 "nucleus" evidence=IEA]
[GO:0001514 "selenocysteine incorporation" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0001514 GeneTree:ENSGT00510000047100 CTD:54952 OMA:EDPTPQL
EMBL:AAEX03001701 RefSeq:XP_535338.2 Ensembl:ENSCAFT00000018643
GeneID:478164 KEGG:cfa:478164 NextBio:20853531 Uniprot:E2QV44
Length = 287
Score = 183 (69.5 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 68/246 (27%), Positives = 114/246 (46%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIREPGND-P--YAFLEFXXXXXXXXXXX 64
+L++G+L+ + E + F+ +G V K+IR P Y F+EF
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 65 XMNKRVFL----EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-F 119
+N + K K+N+A+ G QP D S Y +FVGDL+P+++ L E F +
Sbjct: 64 KINGKPLPGATPAKRFKLNYATY-GKQP--DNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ-WLGSRSIRTNWSTRKPPA 178
++V D QT SKGY FV F + E + A+T G LGS+ +R + + P
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI---PK 176
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIR 237
+ + + S + ++++ Y Q N Y +G D N S + +G T ++
Sbjct: 177 ASRVKPVEYSQMYSYSYNQYYQQYQ--N---YYAQWGYDQNTGSYSYSYPQYGYTQSTMQ 231
Query: 238 VFKEKG 243
++E G
Sbjct: 232 TYEEVG 237
>UNIPROTKB|Q9NX07 [details] [associations]
symbol:TRNAU1AP "tRNA selenocysteine 1-associated protein
1" species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0001514 "selenocysteine
incorporation" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0005737 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
GO:GO:0001514 EMBL:AL513497 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 EMBL:AK000510
EMBL:BC000680 EMBL:BC039879 IPI:IPI00016448 IPI:IPI00867673
RefSeq:NP_060316.1 UniGene:Hs.533626 PDB:2DHG PDB:2DIV PDBsum:2DHG
PDBsum:2DIV ProteinModelPortal:Q9NX07 SMR:Q9NX07 STRING:Q9NX07
PhosphoSite:Q9NX07 DMDM:74761781 PRIDE:Q9NX07
Ensembl:ENST00000373830 GeneID:54952 KEGG:hsa:54952 UCSC:uc001bqh.3
GeneCards:GC01P028879 H-InvDB:HIX0000337 HGNC:HGNC:30813
HPA:HPA032069 neXtProt:NX_Q9NX07 PharmGKB:PA164727240
InParanoid:Q9NX07 PhylomeDB:Q9NX07 ChiTaRS:TRNAU1AP
EvolutionaryTrace:Q9NX07 GenomeRNAi:54952 NextBio:58127 Bgee:Q9NX07
CleanEx:HS_TRNAU1AP Genevestigator:Q9NX07 Uniprot:Q9NX07
Length = 287
Score = 183 (69.5 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 68/246 (27%), Positives = 114/246 (46%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIREPGND-P--YAFLEFXXXXXXXXXXX 64
+L++G+L+ + E + F+ +G V K+IR P Y F+EF
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 65 XMNKRVFL----EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-F 119
+N + K K+N+A+ G QP D S Y +FVGDL+P+++ L E F +
Sbjct: 64 KINGKPLPGATPAKRFKLNYATY-GKQP--DNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ-WLGSRSIRTNWSTRKPPA 178
++V D QT SKGY FV F + E + A+T G LGS+ +R + + P
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI---PK 176
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIR 237
+ + + S + ++++ Y Q N Y +G D N S + +G T ++
Sbjct: 177 ASRVKPVEYSQMYSYSYNQYYQQYQ--N---YYAQWGYDQNTGSYSYSYPQYGYTQSTMQ 231
Query: 238 VFKEKG 243
++E G
Sbjct: 232 TYEEVG 237
>UNIPROTKB|I3LHP4 [details] [associations]
symbol:TRNAU1AP "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0001514
"selenocysteine incorporation" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0001514
GeneTree:ENSGT00510000047100 OMA:EDPTPQL EMBL:FP565629
RefSeq:XP_003356292.1 ProteinModelPortal:I3LHP4 SMR:I3LHP4
PRIDE:I3LHP4 Ensembl:ENSSSCT00000028704 GeneID:100621644
KEGG:ssc:100621644 Uniprot:I3LHP4
Length = 287
Score = 183 (69.5 bits), Expect = 3.3e-12, P = 3.3e-12
Identities = 68/246 (27%), Positives = 114/246 (46%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIREPGND-P--YAFLEFXXXXXXXXXXX 64
+L++G+L+ + E + F+ +G V K+IR P Y F+EF
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 65 XMNKRVFL----EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-F 119
+N + K K+N+A+ G QP D S Y +FVGDL+P+++ L E F +
Sbjct: 64 KINGKPLPGATPAKRFKLNYATY-GKQP--DNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ-WLGSRSIRTNWSTRKPPA 178
++V D QT SKGY FV F + E + A+T G LGS+ +R + + P
Sbjct: 121 PSCRGGKVVLD-QTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAI---PK 176
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIR 237
+ + + S + ++++ Y Q N Y +G D N S + +G T ++
Sbjct: 177 ASRVKPVEYSQMYSYSYNQYYQQYQ--N---YYAQWGYDQNTGSYSYSYPQYGYTQSTMQ 231
Query: 238 VFKEKG 243
++E G
Sbjct: 232 TYEEVG 237
>UNIPROTKB|I3LVL9 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0019907 "cyclin-dependent protein kinase activating
kinase holoenzyme complex" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 OMA:CLQQVNG
Ensembl:ENSSSCT00000029289 Uniprot:I3LVL9
Length = 406
Score = 188 (71.2 bits), Expect = 3.6e-12, P = 3.6e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 23 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 82
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 83 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 128
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 129 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 188
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 189 LRV--GKAVTPPMPLLTPATP 207
Score = 178 (67.7 bits), Expect = 5.2e-11, P = 5.2e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 23 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 82
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 83 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 142
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 143 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 202
Query: 180 T 180
T
Sbjct: 203 T 203
Score = 117 (46.2 bits), Expect = 0.00041, P = 0.00041
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 21 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 80
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 81 QMNSVMLGGRNIKV--GRPS--NIGQAQP 105
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 172 (65.6 bits), Expect = 3.3e-10, P = 3.3e-10
Identities = 46/188 (24%), Positives = 93/188 (49%)
Query: 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEA 150
+++N ++F+ L + TL+ F+ FGEI +CR++ D T S+G+ FV F A A
Sbjct: 94 NSANSGNLFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASA 153
Query: 151 ENAITAMNGQWLGSRSIRTNWSTRKPPAM-TNERKRQNSHTKTITFDEVYNQSSPTNC-- 207
+ AI +MNG + ++++ ++ P + TN N + + ++ TN
Sbjct: 154 QYAINSMNGAKVENKTLLVRFANSDPNSNNTNNSNNNNDDDNNNNNNNNNSNNNNTNNID 213
Query: 208 ------TVYCGGFGKDLNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETA 255
V+ G + ++ +S++FS +G +V DI +G V++ ++A
Sbjct: 214 EQKISNNVFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGLVRYIDTQSA 273
Query: 256 THAIESIH 263
+A++S++
Sbjct: 274 INAVKSLN 281
Score = 126 (49.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 28/87 (32%), Positives = 49/87 (56%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
G P D +N ++V +L + + L F+P G I++ +IVRD T +GY FV
Sbjct: 374 GKNPGTDPTN---LYVYNLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRM 430
Query: 145 VKKAEAENAITAMNGQWLGSRSIRTNW 171
V A++ +AI ++NG +G ++I ++
Sbjct: 431 VSLADSYSAINSINGVQVGGKTISVSF 457
Score = 101 (40.6 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 23/83 (27%), Positives = 42/83 (50%)
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETA 255
+ PTN VY D ++ L+ ++FSP G I +++ ++ +GY FV+ + +
Sbjct: 379 TDPTNLYVY--NLPSDADDSLLYRLFSPCGAIASVKIVRDQTTQVCRGYGFVRMVSLADS 436
Query: 256 THAIESIHNTDINGHTVKCFWGK 278
AI SI+ + G T+ + K
Sbjct: 437 YSAINSINGVQVGGKTISVSFKK 459
Score = 99 (39.9 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 22/78 (28%), Positives = 41/78 (52%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
++ N +Q SN+ +F+ L E + L E F+ +GE+ +++ D T S+G
Sbjct: 207 NNTNNIDEQKISNN--VFIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTNASRGQGL 264
Query: 142 VSFVKKAEAENAITAMNG 159
V ++ A NA+ ++NG
Sbjct: 265 VRYIDTQSAINAVKSLNG 282
Score = 75 (31.5 bits), Expect = 5.2e-12, Sum P(3) = 5.2e-12
Identities = 21/89 (23%), Positives = 40/89 (44%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PG-NDPYAFLEFXXXXXXXXXXXXM 66
L++ L + T + L ++FS G + C+V+ + G + + F++F M
Sbjct: 101 LFISFLPATYTSDTLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSM 160
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQDTSNH 95
N K + V +A+S N + SN+
Sbjct: 161 NGAKVENKTLLVRFANSDPNSNNTNNSNN 189
>FB|FBgn0010263 [details] [associations]
symbol:Rbp9 "RNA-binding protein 9" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=TAS] [GO:0007293
"germarium-derived egg chamber formation" evidence=TAS] [GO:0005634
"nucleus" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0048477
"oogenesis" evidence=IMP] [GO:0036093 "germ cell proliferation"
evidence=IMP] [GO:0060856 "establishment of blood-brain barrier"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002343
InterPro:IPR006548 InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 GO:GO:0007293 TIGRFAMs:TIGR01661
HSSP:P26378 GO:GO:0060856 FlyBase:FBgn0010263 EMBL:S55886
ProteinModelPortal:Q26293 SMR:Q26293 STRING:Q26293 PRIDE:Q26293
InParanoid:Q26293 ArrayExpress:Q26293 Bgee:Q26293 Uniprot:Q26293
Length = 444
Score = 164 (62.8 bits), Expect = 2.5e-09, P = 2.5e-09
Identities = 55/224 (24%), Positives = 101/224 (45%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
N+P T+ + V L + ++ F FGE+ +C+++RD T +S GY FV++V
Sbjct: 104 NEPDPKTN----LIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYV 159
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPT 205
K+ +AE AI A+NG L +++I+ + + ++ + K +T ++ + SP
Sbjct: 160 KQEDAEKAINALNGLRLQNKTIKVSIARPSSESIKGANLYVSGLPKNMTQSDLESLFSP- 218
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNT 265
+GK + ++ + G + KG F++F + A AI+ ++ T
Sbjct: 219 --------YGKIITSRILCDNIT--G---EHAAGLSKGVGFIRFDQRFEADRAIKELNGT 265
Query: 266 DINGHT----VKCFWGKESENNSTLAQPSAPTTPQPNSTAPQFP 305
T VK F S N +++ +A PQ FP
Sbjct: 266 TPKNSTEPITVK-FANNPSSNKNSMQPLAAYIAPQNTRGGRAFP 308
Score = 157 (60.3 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 31/83 (37%), Positives = 52/83 (62%)
Query: 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152
S+ + IFV +L+P+ E L + F PFG + + +++RD Q+ K KG+ FV+ EA
Sbjct: 358 SSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYEEAVL 417
Query: 153 AITAMNGQWLGSRSIRTNWSTRK 175
AI ++NG LG+R ++ ++ T K
Sbjct: 418 AIQSLNGYTLGNRVLQVSFKTNK 440
Score = 144 (55.7 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 45/166 (27%), Positives = 79/166 (47%)
Query: 3 DESQP-TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GND-PYAFLEFXXXXX 58
+E P T L V L +++++ + +LF G V+ CK+IR+ G Y F+ +
Sbjct: 104 NEPDPKTNLIVNYLPQTMSQDEIRSLFVSFGEVESCKLIRDKVTGQSLGYGFVNYVKQED 163
Query: 59 XXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP 118
+N K +KV+ A +P ++ +++V L + L+ F+P
Sbjct: 164 AEKAINALNGLRLQNKTIKVSIA-----RPSSESIKGANLYVSGLPKNMTQSDLESLFSP 218
Query: 119 FGEISNCRIVRDPQTLK-----SKGYAFVSFVKKAEAENAITAMNG 159
+G+I RI+ D T + SKG F+ F ++ EA+ AI +NG
Sbjct: 219 YGKIITSRILCDNITGEHAAGLSKGVGFIRFDQRFEADRAIKELNG 264
Score = 88 (36.0 bits), Expect = 5.2e-12, Sum P(2) = 5.2e-12
Identities = 21/92 (22%), Positives = 44/92 (47%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKE 253
N + + ++ D E ++ ++F PFG + ++V ++ KG+ FV T E
Sbjct: 354 NTIASSGWCIFVYNLAPDTEENVLWQLFGPFGAVQSVKVIRDLQSNKCKGFGFVTMTNYE 413
Query: 254 TATHAIESIHNTDINGHTVKCFWGKESENNST 285
A AI+S++ + ++ + K ++N T
Sbjct: 414 EAVLAIQSLNGYTLGNRVLQVSF-KTNKNKQT 444
>UNIPROTKB|F1ND14 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0040018 "positive regulation of multicellular organism growth"
evidence=IEA] [GO:0042835 "BRE binding" evidence=IEA] [GO:0043484
"regulation of RNA splicing" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IEA] [GO:0006376 "mRNA splice site selection"
evidence=IEA] [GO:0007286 "spermatid development" evidence=IEA]
[GO:0031369 "translation initiation factor binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0040018 GO:GO:0043484 IPI:IPI00854332 GO:GO:0042835
GO:GO:0006376 GeneTree:ENSGT00560000076837 OMA:PTLYNQS
EMBL:AADN02033464 Ensembl:ENSGALT00000013143
Ensembl:ENSGALT00000038511 Uniprot:F1ND14
Length = 485
Score = 160 (61.4 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 45/154 (29%), Positives = 71/154 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-----YAFLEFXXXXXXXXXXX 64
++VG + S E+ L LF Q G V V+R+ +P F+ F
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
++ L M P + K + +F+G +S + ++ F+PFG+I
Sbjct: 78 ALHNMKILPG-MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEE 136
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158
CRI+R P L S+G AFV+F +A A+ AI AM+
Sbjct: 137 CRILRGPDGL-SRGCAFVTFTTRAMAQTAIKAMH 169
Score = 115 (45.5 bits), Expect = 0.00090, P = 0.00090
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++F+ L E Q L + F PFG + + ++ D QT SK + FVS+ A+ AI +
Sbjct: 401 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 460
Query: 157 MNGQWLGSRSIRTNWSTRK 175
MNG +G + ++ K
Sbjct: 461 MNGFQIGMKRLKVQLKRSK 479
Score = 96 (38.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK-----EKGYAFVKFTTKETATHAIESIH 263
++ G K NE + +FSPFG I + R+ + +G AFV FTT+ A AI+++H
Sbjct: 110 LFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 79 (32.9 bits), Expect = 1.5e-05, Sum P(2) = 1.5e-05
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD--PQTLKSKGYAFVS 143
+ P Q + +FVG + + L+E F +G + ++RD +SKG FV+
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 65
Query: 144 F-VKKA--EAENAITAM 157
F +KA EA+NA+ M
Sbjct: 66 FYTRKAALEAQNALHNM 82
Score = 71 (30.1 bits), Expect = 5.7e-12, Sum P(2) = 5.7e-12
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKET 254
+ P ++ ++ ++ + ++F PFG +V +VF +K + FV + +
Sbjct: 394 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 453
Query: 255 ATHAIESIHNTDINGHTVKCFWGKESENNS 284
A AI+S++ I +K K S+N+S
Sbjct: 454 AQAAIQSMNGFQIGMKRLKVQL-KRSKNDS 482
>UNIPROTKB|Q5F3T7 [details] [associations]
symbol:CELF1 "CUGBP Elav-like family member 1" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0005737
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646 KO:K13207
EMBL:AJ851563 EMBL:AB050497 IPI:IPI00581213 IPI:IPI00854332
RefSeq:NP_001012539.1 UniGene:Gga.14943 UniGene:Gga.56092
ProteinModelPortal:Q5F3T7 SMR:Q5F3T7 STRING:Q5F3T7 PRIDE:Q5F3T7
GeneID:373923 KEGG:gga:373923 CTD:10658 eggNOG:NOG251494
HOGENOM:HOG000004754 InParanoid:Q5F3T7 OrthoDB:EOG4N8R4X
NextBio:20813455 Uniprot:Q5F3T7
Length = 489
Score = 160 (61.4 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 45/154 (29%), Positives = 71/154 (46%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-----YAFLEFXXXXXXXXXXX 64
++VG + S E+ L LF Q G V V+R+ +P F+ F
Sbjct: 18 MFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQN 77
Query: 65 XMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISN 124
++ L M P + K + +F+G +S + ++ F+PFG+I
Sbjct: 78 ALHNMKILPG-MHHPIQMKPADSEKNNAVEDRKLFIGMISKKCNENDIRVMFSPFGQIEE 136
Query: 125 CRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158
CRI+R P L S+G AFV+F +A A+ AI AM+
Sbjct: 137 CRILRGPDGL-SRGCAFVTFTTRAMAQTAIKAMH 169
Score = 115 (45.5 bits), Expect = 0.00091, P = 0.00091
Identities = 25/79 (31%), Positives = 41/79 (51%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
++F+ L E Q L + F PFG + + ++ D QT SK + FVS+ A+ AI +
Sbjct: 405 NLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQS 464
Query: 157 MNGQWLGSRSIRTNWSTRK 175
MNG +G + ++ K
Sbjct: 465 MNGFQIGMKRLKVQLKRSK 483
Score = 96 (38.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 22/60 (36%), Positives = 34/60 (56%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK-----EKGYAFVKFTTKETATHAIESIH 263
++ G K NE + +FSPFG I + R+ + +G AFV FTT+ A AI+++H
Sbjct: 110 LFIGMISKKCNENDIRVMFSPFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMH 169
Score = 79 (32.9 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 24/77 (31%), Positives = 39/77 (50%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRD--PQTLKSKGYAFVS 143
+ P Q + +FVG + + L+E F +G + ++RD +SKG FV+
Sbjct: 6 DHPDQPDLDAIKMFVGQVPRSWCEKDLRELFEQYGAVYEINVLRDRSQNPPQSKGCCFVT 65
Query: 144 F-VKKA--EAENAITAM 157
F +KA EA+NA+ M
Sbjct: 66 FYTRKAALEAQNALHNM 82
Score = 71 (30.1 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 21/90 (23%), Positives = 43/90 (47%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKET 254
+ P ++ ++ ++ + ++F PFG +V +VF +K + FV + +
Sbjct: 398 KEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVS 457
Query: 255 ATHAIESIHNTDINGHTVKCFWGKESENNS 284
A AI+S++ I +K K S+N+S
Sbjct: 458 AQAAIQSMNGFQIGMKRLKVQL-KRSKNDS 486
>UNIPROTKB|F1P1V2 [details] [associations]
symbol:LOC426301 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0019907 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AADN02016569 EMBL:AADN02016570
EMBL:AADN02016571 EMBL:AADN02016572 EMBL:AADN02016573
EMBL:AADN02016574 IPI:IPI00820905 Ensembl:ENSGALT00000022812
ArrayExpress:F1P1V2 Uniprot:F1P1V2
Length = 522
Score = 188 (71.2 bits), Expect = 6.4e-12, P = 6.4e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 94 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 153
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 154 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 199
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 200 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 259
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 260 LRV--GKAVTPPMPLLTPATP 278
Score = 178 (67.7 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 94 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 153
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 154 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 213
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 214 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 273
Query: 180 T 180
T
Sbjct: 274 T 274
Score = 117 (46.2 bits), Expect = 0.00060, P = 0.00060
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 92 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 151
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 152 QMNSVMLGGRNIKV--GRPS--NIGQAQP 176
>UNIPROTKB|F1N238 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0019907 "cyclin-dependent protein
kinase activating kinase holoenzyme complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0019907 GeneTree:ENSGT00630000089747
InterPro:IPR006532 TIGRFAMs:TIGR01645 IPI:IPI00697616
UniGene:Bt.56130 OMA:CLQQVNG EMBL:DAAA02037460
Ensembl:ENSBTAT00000002882 Uniprot:F1N238
Length = 530
Score = 188 (71.2 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 162 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 207
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 208 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 267
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 268 LRV--GKAVTPPMPLLTPATP 286
Score = 178 (67.7 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 162 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 221
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 222 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 281
Query: 180 T 180
T
Sbjct: 282 T 282
Score = 117 (46.2 bits), Expect = 0.00061, P = 0.00061
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 100 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 159
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 160 QMNSVMLGGRNIKV--GRPS--NIGQAQP 184
>UNIPROTKB|Q2HJG2 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 HOGENOM:HOG000267001 HOVERGEN:HBG055622
OrthoDB:EOG4SQWWP InterPro:IPR006532 TIGRFAMs:TIGR01645
EMBL:BC105447 IPI:IPI00697616 RefSeq:NP_001039598.1
UniGene:Bt.56130 ProteinModelPortal:Q2HJG2 SMR:Q2HJG2 STRING:Q2HJG2
PRIDE:Q2HJG2 GeneID:512824 KEGG:bta:512824 CTD:22827
InParanoid:Q2HJG2 KO:K12838 NextBio:20870569 Uniprot:Q2HJG2
Length = 530
Score = 188 (71.2 bits), Expect = 6.6e-12, P = 6.6e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 162 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 207
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 208 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 267
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 268 LRV--GKAVTPPMPLLTPATP 286
Score = 178 (67.7 bits), Expect = 9.1e-11, P = 9.1e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 102 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 161
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 162 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 221
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 222 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 281
Query: 180 T 180
T
Sbjct: 282 T 282
Score = 117 (46.2 bits), Expect = 0.00061, P = 0.00061
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 100 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 159
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 160 QMNSVMLGGRNIKV--GRPS--NIGQAQP 184
>UNIPROTKB|E2RA48 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 CTD:22827 KO:K12838 EMBL:AAEX03008941
RefSeq:XP_857040.1 Ensembl:ENSCAFT00000002168 GeneID:607245
KEGG:cfa:607245 NextBio:20892984 Uniprot:E2RA48
Length = 543
Score = 188 (71.2 bits), Expect = 6.9e-12, P = 6.9e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 115 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 174
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 175 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 220
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 221 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 280
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 281 LRV--GKAVTPPMPLLTPATP 299
Score = 178 (67.7 bits), Expect = 9.5e-11, P = 9.5e-11
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 115 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 174
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 175 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 234
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 235 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 294
Query: 180 T 180
T
Sbjct: 295 T 295
Score = 117 (46.2 bits), Expect = 0.00064, P = 0.00063
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 113 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 172
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 173 QMNSVMLGGRNIKV--GRPS--NIGQAQP 197
>UNIPROTKB|Q9UHX1 [details] [associations]
symbol:PUF60 "Poly(U)-binding-splicing factor PUF60"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006915 "apoptotic process"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0019907
"cyclin-dependent protein kinase activating kinase holoenzyme
complex" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR000504 InterPro:IPR003954
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
SMART:SM00361 GO:GO:0005634 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
EMBL:CH471162 eggNOG:COG0724 PDB:2KXH PDBsum:2KXH
HOVERGEN:HBG055622 InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827
KO:K12838 EMBL:AF217197 EMBL:AF114818 EMBL:AK292373 EMBL:CR457143
EMBL:BC008875 EMBL:BC009734 EMBL:BC011265 EMBL:BC011979 EMBL:U51586
EMBL:AF190744 IPI:IPI00069750 IPI:IPI00100716 IPI:IPI00788826
IPI:IPI00797595 IPI:IPI00855912 IPI:IPI00856076
RefSeq:NP_001129505.1 RefSeq:NP_001258025.1 RefSeq:NP_001258026.1
RefSeq:NP_001258027.1 RefSeq:NP_001258028.1 RefSeq:NP_001258029.1
RefSeq:NP_055096.2 RefSeq:NP_510965.1 UniGene:Hs.521924 PDB:2DNY
PDB:2KXF PDB:2QFJ PDB:3DXB PDB:3UE2 PDB:3US5 PDB:3UWT PDBsum:2DNY
PDBsum:2KXF PDBsum:2QFJ PDBsum:3DXB PDBsum:3UE2 PDBsum:3US5
PDBsum:3UWT ProteinModelPortal:Q9UHX1 SMR:Q9UHX1 DIP:DIP-34636N
IntAct:Q9UHX1 MINT:MINT-1374433 STRING:Q9UHX1 PhosphoSite:Q9UHX1
DMDM:74761960 PaxDb:Q9UHX1 PRIDE:Q9UHX1 Ensembl:ENST00000313352
Ensembl:ENST00000349157 Ensembl:ENST00000453551
Ensembl:ENST00000456095 Ensembl:ENST00000526683
Ensembl:ENST00000527197 Ensembl:ENST00000563311
Ensembl:ENST00000563654 Ensembl:ENST00000566765
Ensembl:ENST00000567937 Ensembl:ENST00000568960
Ensembl:ENST00000569567 GeneID:22827 KEGG:hsa:22827 UCSC:uc003yzq.3
UCSC:uc003yzr.3 UCSC:uc003yzt.3 GeneCards:GC08M144898
HGNC:HGNC:17042 HPA:HPA045733 MIM:604819 neXtProt:NX_Q9UHX1
PharmGKB:PA162400364 InParanoid:Q9UHX1 OMA:CLQQVNG
EvolutionaryTrace:Q9UHX1 GenomeRNAi:22827 NextBio:43236
ArrayExpress:Q9UHX1 Bgee:Q9UHX1 CleanEx:HS_PUF60
Genevestigator:Q9UHX1 Uniprot:Q9UHX1
Length = 559
Score = 188 (71.2 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 191 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 236
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 237 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 296
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 297 LRV--GKAVTPPMPLLTPATP 315
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 131 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 190
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 191 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 250
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 251 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 310
Query: 180 T 180
T
Sbjct: 311 T 311
Score = 117 (46.2 bits), Expect = 0.00066, P = 0.00066
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 129 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 188
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 189 QMNSVMLGGRNIKV--GRPS--NIGQAQP 213
>UNIPROTKB|J9P4I7 [details] [associations]
symbol:PUF60 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR003954 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 SMART:SM00361 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 GeneTree:ENSGT00630000089747 InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG EMBL:AAEX03008941
Ensembl:ENSCAFT00000045695 Uniprot:J9P4I7
Length = 560
Score = 188 (71.2 bits), Expect = 7.3e-12, P = 7.3e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 132 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 191
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 192 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 237
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 238 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 297
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 298 LRV--GKAVTPPMPLLTPATP 316
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 132 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 191
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 192 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 251
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 252 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 311
Query: 180 T 180
T
Sbjct: 312 T 312
Score = 117 (46.2 bits), Expect = 0.00066, P = 0.00066
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 130 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 189
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 190 QMNSVMLGGRNIKV--GRPS--NIGQAQP 214
>MGI|MGI:1915209 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:1915209 GO:GO:0006915 GO:GO:0006355
GO:GO:0008380 GO:GO:0000166 GO:GO:0003677 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723 GO:GO:0030529
eggNOG:COG0724 GO:GO:0019907 GeneTree:ENSGT00630000089747
HOGENOM:HOG000267001 HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP
InterPro:IPR006532 TIGRFAMs:TIGR01645 CTD:22827 KO:K12838
OMA:CLQQVNG EMBL:AK149632 EMBL:AK151526 EMBL:AK168789 EMBL:BC010601
IPI:IPI00127174 IPI:IPI00652919 IPI:IPI00857642
RefSeq:NP_001158072.1 RefSeq:NP_082640.2 RefSeq:NP_598452.2
UniGene:Mm.29965 HSSP:Q9UNP9 ProteinModelPortal:Q3UEB3 SMR:Q3UEB3
STRING:Q3UEB3 PhosphoSite:Q3UEB3 PaxDb:Q3UEB3 PRIDE:Q3UEB3
Ensembl:ENSMUST00000002599 Ensembl:ENSMUST00000100527 GeneID:67959
KEGG:mmu:67959 UCSC:uc007wij.2 UCSC:uc007wik.2 UCSC:uc011zup.1
InParanoid:Q3UEB3 NextBio:326074 Bgee:Q3UEB3 CleanEx:MM_PUF60
Genevestigator:Q3UEB3 Uniprot:Q3UEB3
Length = 564
Score = 188 (71.2 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 196 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 241
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 242 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 301
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 302 LRV--GKAVTPPMPLLTPATP 320
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 196 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 255
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 256 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 315
Query: 180 T 180
T
Sbjct: 316 T 316
Score = 117 (46.2 bits), Expect = 0.00067, P = 0.00067
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 134 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 193
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 194 QMNSVMLGGRNIKV--GRPS--NIGQAQP 218
>RGD|621674 [details] [associations]
symbol:Puf60 "poly-U binding splicing factor 60" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0019907 "cyclin-dependent protein kinase activating kinase
holoenzyme complex" evidence=IEA;ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 RGD:621674 GO:GO:0006915
GO:GO:0006355 GO:GO:0008380 GO:GO:0000166 GO:GO:0003677
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003723
GO:GO:0030529 eggNOG:COG0724 GO:GO:0019907
GeneTree:ENSGT00630000089747 HOGENOM:HOG000267001
HOVERGEN:HBG055622 OrthoDB:EOG4SQWWP InterPro:IPR006532
TIGRFAMs:TIGR01645 OMA:CLQQVNG HSSP:Q9UNP9 EMBL:AF165892
EMBL:AABR03055594 IPI:IPI00204315 IPI:IPI00780677 UniGene:Rn.96174
ProteinModelPortal:Q9WV25 SMR:Q9WV25 STRING:Q9WV25 PRIDE:Q9WV25
Ensembl:ENSRNOT00000013353 Ensembl:ENSRNOT00000056481
UCSC:RGD:621674 InParanoid:Q9WV25 NextBio:616833
Genevestigator:Q9WV25 Uniprot:Q9WV25
Length = 564
Score = 188 (71.2 bits), Expect = 7.4e-12, P = 7.4e-12
Identities = 55/201 (27%), Positives = 97/201 (48%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG + E+ T+++AFAPFG I + + D T+K KG+AFV + A+ A+ M
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
N LG R+I+ +P +N + Q D++ ++ N +Y +D
Sbjct: 196 NSVMLGGRNIKVG----RP---SNIGQAQP------IIDQLAEEARAFN-RIYVASVHQD 241
Query: 218 LNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
L+++ + VF FG I D K KGY F+++ +++ A+ S++ D+ G
Sbjct: 242 LSDDDIKSVFEAFGKIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQY 301
Query: 272 VKCFWGKESENNSTLAQPSAP 292
++ GK L P+ P
Sbjct: 302 LRV--GKAVTPPMPLLTPATP 320
Score = 178 (67.7 bits), Expect = 1.0e-10, P = 1.0e-10
Identities = 46/181 (25%), Positives = 86/181 (47%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFXXXXXXXXXXXXM 66
+YVG++ + E+ + F+ GP+K + + + +AF+E+ M
Sbjct: 136 VYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQM 195
Query: 67 NKRVFLEKEMKVNWASSPGN-QP-----KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFG 120
N + + +KV S+ G QP ++ I+V + ++ +K F FG
Sbjct: 196 NSVMLGGRNIKVGRPSNIGQAQPIIDQLAEEARAFNRIYVASVHQDLSDDDIKSVFEAFG 255
Query: 121 EISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP-PAM 179
+I +C + RDP T K KGY F+ + K +++A+++MN LG + +R + P P +
Sbjct: 256 KIKSCTLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLRVGKAVTPPMPLL 315
Query: 180 T 180
T
Sbjct: 316 T 316
Score = 117 (46.2 bits), Expect = 0.00067, P = 0.00067
Identities = 30/89 (33%), Positives = 47/89 (52%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTI--VDIR----VFKEKGYAFVKFTTKETATHAIE 260
C VY G +L E+ + + F+PFG I +D+ K KG+AFV++ E A A+E
Sbjct: 134 CRVYVGSIYYELGEDTIRQAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALE 193
Query: 261 SIHNTDINGHTVKCFWGKESENNSTLAQP 289
+++ + G +K G+ S N AQP
Sbjct: 194 QMNSVMLGGRNIKV--GRPS--NIGQAQP 218
>FB|FBgn0086675 [details] [associations]
symbol:fne "found in neurons" species:7227 "Drosophila
melanogaster" [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0051252 "regulation of
RNA metabolic process" evidence=IMP] [GO:0008266 "poly(U) RNA
binding" evidence=IDA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008049 "male courtship behavior" evidence=IMP]
InterPro:IPR000504 InterPro:IPR002343 InterPro:IPR006548
InterPro:IPR012677 Pfam:PF00076 PRINTS:PR00961 PROSITE:PS50102
SMART:SM00360 GO:GO:0005737 GO:GO:0008266 GO:GO:0000166
EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330 eggNOG:COG0724
TIGRFAMs:TIGR01661 GeneTree:ENSGT00560000077064 KO:K13208
OMA:SNSRNCP HSSP:Q60900 GO:GO:0051252 EMBL:AF239667 EMBL:BT120384
RefSeq:NP_001096965.1 RefSeq:NP_001245646.1 RefSeq:NP_001245648.1
RefSeq:NP_001245649.1 RefSeq:NP_572842.1 UniGene:Dm.3314 SMR:Q9VYI0
IntAct:Q9VYI0 MINT:MINT-1646975 STRING:Q9VYI0
EnsemblMetazoa:FBtr0073712 EnsemblMetazoa:FBtr0113493
EnsemblMetazoa:FBtr0306738 EnsemblMetazoa:FBtr0308694
EnsemblMetazoa:FBtr0308695 EnsemblMetazoa:FBtr0333319
EnsemblMetazoa:FBtr0333320 GeneID:32245 KEGG:dme:Dmel_CG4396
UCSC:CG4396-RA CTD:32245 FlyBase:FBgn0086675 InParanoid:Q9VYI0
OrthoDB:EOG44B8HT GenomeRNAi:32245 NextBio:777561 Uniprot:Q9VYI0
Length = 356
Score = 168 (64.2 bits), Expect = 5.3e-10, P = 5.3e-10
Identities = 36/92 (39%), Positives = 55/92 (59%)
Query: 84 PGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVS 143
PGN T + + IFV +L+PE E L + F PFG + + +++RD QT K KG+ FV+
Sbjct: 264 PGNAM---TGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVT 320
Query: 144 FVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
EA AI ++NG LG+R ++ ++ T K
Sbjct: 321 MTNYDEAVVAIQSLNGYTLGNRVLQVSFKTNK 352
Score = 150 (57.9 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 51/179 (28%), Positives = 85/179 (47%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP--GN----------DP--- 47
DES+ T L V L ++T+E + +LFS IG ++ CK++R+ GN +P
Sbjct: 22 DESR-TNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRDKVSGNLVLPASLTALNPALQ 80
Query: 48 ------YAFLEFXXXXXXXXXXXXMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVG 101
Y F+ + +N K +KV++A +P ++ +++V
Sbjct: 81 QGQSLGYGFVNYVRAEDAEKAVNTLNGLRLQNKVIKVSYA-----RPSSESIKGANLYVS 135
Query: 102 DLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ 160
L + L+ FA FG+I RI+ D + SKG F+ F ++ EAE AI +NG+
Sbjct: 136 GLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQRNEAERAIQELNGK 194
Score = 115 (45.5 bits), Expect = 0.00055, P = 0.00055
Identities = 55/227 (24%), Positives = 97/227 (42%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
S+ G+ + + ++ V L + + ++ F+ GE+ +C++VRD K G
Sbjct: 12 SANGSVDGSNDESRTNLIVNYLPQTMTQEEMRSLFSSIGELESCKLVRD----KVSG--- 64
Query: 142 VSFVKKAEAENAITAMN-GQWLGS---RSIRTNWSTRKPPAMTNERKRQNSHTKTITFDE 197
+ V A A+ GQ LG +R K N + QN K +++
Sbjct: 65 -NLVLPASLTALNPALQQGQSLGYGFVNYVRAE-DAEKAVNTLNGLRLQNKVIK-VSYAR 121
Query: 198 VYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTT 251
++S +Y G K+L++ + +F+ FG I+ R+ + KG F++F
Sbjct: 122 PSSESIK-GANLYVSGLPKNLSQPDLEGMFASFGKIITSRILCDNISGLSKGVGFIRFDQ 180
Query: 252 KETATHAIESIHNTDINGH----TVKCFWGKESENNSTLAQPSAPTT 294
+ A AI+ ++ G+ TVK F S NS AQ + P T
Sbjct: 181 RNEAERAIQELNGKTPKGYAEPITVK-FANNPS--NSAKAQIAPPLT 224
Score = 76 (31.8 bits), Expect = 7.5e-12, Sum P(2) = 7.5e-12
Identities = 19/79 (24%), Positives = 39/79 (49%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKE 253
N + + ++ + E ++ ++F PFG + ++V ++ KG+ FV T +
Sbjct: 266 NAMTGSGWCIFVYNLAPETEENVLWQLFGPFGAVQSVKVIRDLQTSKCKGFGFVTMTNYD 325
Query: 254 TATHAIESIHNTDINGHTV 272
A AI+S+ NG+T+
Sbjct: 326 EAVVAIQSL-----NGYTL 339
>MGI|MGI:1919037 [details] [associations]
symbol:Trnau1ap "tRNA selenocysteine 1 associated protein 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0001514 "selenocysteine incorporation"
evidence=IDA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 MGI:MGI:1919037 GO:GO:0005634
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HSSP:P11940 GO:GO:0001514
GeneTree:ENSGT00510000047100 CTD:54952 HOGENOM:HOG000234338
HOVERGEN:HBG056959 OMA:EDPTPQL OrthoDB:EOG44BB34 ChiTaRS:TRNAU1AP
EMBL:AK152986 EMBL:CR752656 EMBL:BC005795 EMBL:BC048840
EMBL:BC055454 EMBL:BC099594 IPI:IPI00556790 RefSeq:NP_082201.2
UniGene:Mm.239183 ProteinModelPortal:Q80VC6 SMR:Q80VC6
STRING:Q80VC6 PhosphoSite:Q80VC6 PRIDE:Q80VC6
Ensembl:ENSMUST00000030730 GeneID:71787 KEGG:mmu:71787
UCSC:uc008vbb.1 InParanoid:Q80VC6 NextBio:334520 Bgee:Q80VC6
CleanEx:MM_TRSPAP1 Genevestigator:Q80VC6 Uniprot:Q80VC6
Length = 287
Score = 180 (68.4 bits), Expect = 8.2e-12, P = 8.2e-12
Identities = 67/246 (27%), Positives = 113/246 (45%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGP-VKGCKVIREPGND-P--YAFLEFXXXXXXXXXXX 64
+L++G+L+ + E + F+ +G V K+IR P Y F+EF
Sbjct: 4 SLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLH 63
Query: 65 XMNKRVFL----EKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAP-F 119
+N + K K+N+A+ G QP D S Y +FVGDL+P+++ L E F +
Sbjct: 64 KINGKPLPGATPAKRFKLNYATY-GKQP--DNSPEYSLFVGDLTPDVDDGMLYEFFVKVY 120
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQ-WLGSRSIRTNWSTRKPPA 178
++V DP T SKGY FV F + E + A+T G LG + +R + + P
Sbjct: 121 PSCRGGKVVLDP-TGVSKGYGFVKFTDELEQKRALTECQGAVGLGCKPVRLSVAI---PK 176
Query: 179 MTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFG-TIVDIR 237
+ + + S + ++++ Y Q N Y +G D N S + +G T ++
Sbjct: 177 ASRVKPVEYSQMYSYSYNQYYQQYQ--N---YYAQWGYDQNTGSYSYSYPQYGYTQSTMQ 231
Query: 238 VFKEKG 243
++E G
Sbjct: 232 TYEEVG 237
>DICTYBASE|DDB_G0289337 [details] [associations]
symbol:DDB_G0289337 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0289337 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000139 eggNOG:NOG145324 RefSeq:XP_636266.1
ProteinModelPortal:Q54HN5 EnsemblProtists:DDB0188369 GeneID:8627085
KEGG:ddi:DDB_G0289337 InParanoid:Q54HN5 OMA:MESINIS Uniprot:Q54HN5
Length = 1528
Score = 192 (72.6 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 64/222 (28%), Positives = 102/222 (45%)
Query: 87 QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 146
Q Q+ + IF+ + I + L++ F +G I +CRIV D T +SKGYA++ + K
Sbjct: 758 QQDQELVPYSRIFI-ICNKSITEKNLEDCFKVYGSIESCRIVIDKDTNESKGYAYIKYTK 816
Query: 147 KAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTN 206
+ A AI MNG+ L S S + E K + TK + + + +
Sbjct: 817 TSSAALAIEEMNGKILEMDS-----SCSPIRVLIAEAK--GTKTKPLLSSDPEDHPPNSR 869
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAIE 260
V C K L E+ + F FG + ++R+ +EK G AF+KF+ TA A+E
Sbjct: 870 LFVVCN---KSLTEQELKNKFKEFGNLENVRLIREKSTNDSKGCAFIKFSKASTAAIAME 926
Query: 261 SIH--NTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNST 300
SI+ NT + +K F + + QP+ T +T
Sbjct: 927 SINISNTG-EEYPLKVFIAQPKVKYNKSNQPTGANTTTTTTT 967
Score = 136 (52.9 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 44/156 (28%), Positives = 75/156 (48%)
Query: 18 SVTEELLCALFSQIGPVKGCK-VIREPGNDP--YAFLEFXXXXXXXXXXXXMNKRVFLEK 74
S+TE+ L F G ++ C+ VI + N+ YA++++ MN ++ LE
Sbjct: 776 SITEKNLEDCFKVYGSIESCRIVIDKDTNESKGYAYIKYTKTSSAALAIEEMNGKI-LEM 834
Query: 75 E-----MKVNWASSPGNQPK----QDTSNH---YHIFVGDLSPEIETQTLKEAFAPFGEI 122
+ ++V A + G + K D +H +FV + + Q LK F FG +
Sbjct: 835 DSSCSPIRVLIAEAKGTKTKPLLSSDPEDHPPNSRLFVV-CNKSLTEQELKNKFKEFGNL 893
Query: 123 SNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMN 158
N R++R+ T SKG AF+ F K + A A+ ++N
Sbjct: 894 ENVRLIREKSTNDSKGCAFIKFSKASTAAIAMESIN 929
Score = 50 (22.7 bits), Expect = 8.6e-06, Sum P(2) = 8.6e-06
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 216 KDLNEELVSKVFS--PFGTIVDIR----VFKEKGYAFVKFTTKETATHAIESIHNTDI-N 268
K +++E + ++FS P D++ K KG+A+V +++ + A A ++
Sbjct: 1266 KSISQENLYRLFSRYPGMEYCDLKKDKNTGKSKGFAYVNYSSPQAALLAKNDLNGIKYPT 1325
Query: 269 GHTVK 273
HT+K
Sbjct: 1326 SHTLK 1330
Score = 47 (21.6 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
Identities = 17/54 (31%), Positives = 22/54 (40%)
Query: 247 VKFTTKETATHAIESIHNTDINGHTVKCFWGKESENNST-LAQPSAPTTPQPNS 299
VK+ T A + T N +T + NNST L Q PTT N+
Sbjct: 948 VKYNKSNQPTGANTTTTTTTTNTNTNN---NNNNNNNSTNLNQSKVPTTTTTNT 998
WARNING: HSPs involving 975 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.316 0.130 0.396 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 390 346 0.00098 116 3 11 22 0.42 34
33 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1225
No. of states in DFA: 612 (65 KB)
Total size of DFA: 247 KB (2132 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 30.85u 0.10s 30.95t Elapsed: 00:00:05
Total cpu time: 30.96u 0.10s 31.06t Elapsed: 00:00:05
Start: Thu Aug 15 11:18:28 2013 End: Thu Aug 15 11:18:33 2013
WARNINGS ISSUED: 2