RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2618
(390 letters)
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 100 bits (249), Expect = 9e-26
Identities = 38/177 (21%), Positives = 68/177 (38%), Gaps = 4/177 (2%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVA 59
+ Q L++G L T+E L + F Q G + C V+R+P + F+ +
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPF 119
A+ A +V S +Q IFVG + + E L++ F +
Sbjct: 62 DAAMNARPHKVDGRVVEPKRAVSREDSQRPGAHLTVKKIFVGGIKEDTEEHHLRDYFEQY 121
Query: 120 GEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176
G+I I+ D + K +G+AFV+F + + + + + K
Sbjct: 122 GKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCEVRKALSKQ 177
Score = 78.5 bits (192), Expect = 9e-18
Identities = 40/194 (20%), Positives = 78/194 (40%), Gaps = 27/194 (13%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+F+G LS E ++L+ F +G +++C ++RDP T +S+G+ FV++ E + A+ A
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNAR 68
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKD 217
+ G +R+ + T ++ GG +D
Sbjct: 69 PHKVDGRVVEPKRAVSREDSQR--------------------PGAHLTVKKIFVGGIKED 108
Query: 218 LNEELVSKVFSPFGTI------VDIRVFKEKGYAFVKFTTKETATHAIESIHNTDINGHT 271
E + F +G I D K++G+AFV F ++ + +NGH
Sbjct: 109 TEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHN 167
Query: 272 VKCFWGKESENNST 285
+ + ++
Sbjct: 168 CEVRKALSKQEMAS 181
Score = 48.8 bits (115), Expect = 1e-07
Identities = 16/97 (16%), Positives = 33/97 (34%), Gaps = 9/97 (9%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHT 57
++VG + E L F Q G ++ +++ + G+ +AF+ F H
Sbjct: 91 PGAHLTVKKIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHD 150
Query: 58 VAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSN 94
+ +V A KQ+ ++
Sbjct: 151 SVDKIV-IQKYHTVNGHNCEVRKA-----LSKQEMAS 181
Score = 40.0 bits (92), Expect = 2e-04
Identities = 14/75 (18%), Positives = 28/75 (37%), Gaps = 6/75 (8%)
Query: 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF------KEKGYAFVKFTTKETATHAIES 261
++ GG + +E + F +GT+ D V + +G+ FV + T E A+ +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 262 IHNTDINGHTVKCFW 276
+
Sbjct: 68 RPHKVDGRVVEPKRA 82
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 96.6 bits (240), Expect = 2e-25
Identities = 55/95 (57%), Positives = 73/95 (76%)
Query: 190 TKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKF 249
TK + F++V NQSSP NCTVYCGG L ++L+ + FSPFG I++IRVF EKGY+FV+F
Sbjct: 2 TKQLRFEDVVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKGYSFVRF 61
Query: 250 TTKETATHAIESIHNTDINGHTVKCFWGKESENNS 284
+T E+A HAI S++ T I GH VKC+WGKES + +
Sbjct: 62 STHESAAHAIVSVNGTTIEGHVVKCYWGKESPDMT 96
Score = 73.9 bits (181), Expect = 4e-17
Identities = 22/92 (23%), Positives = 43/92 (46%), Gaps = 7/92 (7%)
Query: 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 148
Q + + ++ G ++ + Q +++ F+PFG+I R+ + Y+FV F
Sbjct: 12 NQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPEKG------YSFVRFSTHE 65
Query: 149 EAENAITAMNGQWLGSRSIRTNWSTRKPPAMT 180
A +AI ++NG + ++ W P MT
Sbjct: 66 SAAHAIVSVNGTTIEGHVVKCYWGKESPD-MT 96
Score = 69.2 bits (169), Expect = 2e-15
Identities = 21/83 (25%), Positives = 38/83 (45%), Gaps = 5/83 (6%)
Query: 1 MCDESQP--TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTV 58
+ ++S P T+Y G + +T++L+ FS G + +V Y+F+ F H
Sbjct: 10 VVNQSSPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFP---EKGYSFVRFSTHES 66
Query: 59 AATALAAMNKRVFLEKEMKVNWA 81
AA A+ ++N +K W
Sbjct: 67 AAHAIVSVNGTTIEGHVVKCYWG 89
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 84.6 bits (209), Expect = 4e-21
Identities = 31/77 (40%), Positives = 47/77 (61%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VGDL P++ L E F+P G I + R+ RD T +S GYA+V+F + A+AE A+ M
Sbjct: 3 LYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTM 62
Query: 158 NGQWLGSRSIRTNWSTR 174
N + + +R WS R
Sbjct: 63 NFDVIKGKPVRIMWSQR 79
Score = 67.6 bits (165), Expect = 5e-15
Identities = 26/76 (34%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAA 65
+LYVG+L VTE +L FS GP+ +V R+ YA++ F A AL
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 66 MNKRVFLEKEMKVNWA 81
MN V K +++ W+
Sbjct: 62 MNFDVIKGKPVRIMWS 77
Score = 56.1 bits (135), Expect = 6e-11
Identities = 23/77 (29%), Positives = 40/77 (51%), Gaps = 6/77 (7%)
Query: 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAIES 261
++Y G D+ E ++ + FSP G I+ IRV ++ GYA+V F A A+++
Sbjct: 2 SLYVGDLHPDVTEAMLYEKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDT 61
Query: 262 IHNTDINGHTVKCFWGK 278
++ I G V+ W +
Sbjct: 62 MNFDVIKGKPVRIMWSQ 78
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 78.9 bits (194), Expect = 5e-19
Identities = 54/88 (61%), Positives = 62/88 (70%), Gaps = 1/88 (1%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-NDPYAFLEFVHHTVA 59
M D+ QP TLYVGNL VTE L+ LFSQIGP K CK+I E NDPY F+EF H A
Sbjct: 2 MEDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDA 61
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQ 87
A ALAAMN R L KE+KVNWA++P +Q
Sbjct: 62 AAALAAMNGRKILGKEVKVNWATTPSSQ 89
Score = 64.3 bits (156), Expect = 1e-13
Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 2/87 (2%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
+D ++VG+LS ++ + + F+ G +C+++ + + Y FV F + +
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHT--SNDPYCFVEFYEHRD 60
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKP 176
A A+ AMNG+ + + ++ NW+T
Sbjct: 61 AAAALAAMNGRKILGKEVKVNWATTPS 87
Score = 52.0 bits (124), Expect = 2e-09
Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 4/87 (4%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGY----AFVKFTTKETAT 256
+ T+Y G +D+ E L+ ++FS G ++ E FV+F A
Sbjct: 3 EDDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAA 62
Query: 257 HAIESIHNTDINGHTVKCFWGKESENN 283
A+ +++ I G VK W +
Sbjct: 63 AALAAMNGRKILGKEVKVNWATTPSSQ 89
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 78.1 bits (192), Expect = 1e-18
Identities = 23/91 (25%), Positives = 46/91 (50%), Gaps = 4/91 (4%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDP-QTLKSKGYAFVSFVK 146
PK+ T++ I V ++ + + ++E F+ FGE+ R+ + T +G+ FV F+
Sbjct: 3 PKKQTTSK--ILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFIT 60
Query: 147 KAEAENAITAM-NGQWLGSRSIRTNWSTRKP 176
K +A+ A A+ + L R + W+ +
Sbjct: 61 KQDAKKAFNALCHSTHLYGRRLVLEWADSEV 91
Score = 66.5 bits (162), Expect = 2e-14
Identities = 15/85 (17%), Positives = 36/85 (42%), Gaps = 5/85 (5%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG----NDPYAFLEFVHHTVA 59
+ + + V N+ + + LFS G +K ++ ++ + + F++F+ A
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 60 ATALAAM-NKRVFLEKEMKVNWASS 83
A A+ + + + + WA S
Sbjct: 65 KKAFNALCHSTHLYGRRLVLEWADS 89
Score = 57.6 bits (139), Expect = 3e-11
Identities = 19/87 (21%), Positives = 35/87 (40%), Gaps = 8/87 (9%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK-------GYAFVKFTTKETA 255
T + N+ + ++FS FG + +R+ K+ G+ FV F TK+ A
Sbjct: 5 KQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDA 64
Query: 256 THAIESIHN-TDINGHTVKCFWGKESE 281
A ++ + T + G + W
Sbjct: 65 KKAFNALCHSTHLYGRRLVLEWADSEV 91
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 77.0 bits (189), Expect = 4e-18
Identities = 24/100 (24%), Positives = 53/100 (53%), Gaps = 1/100 (1%)
Query: 76 MKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLK 135
M+ + P + K++ +F+G LS E ++L+ + +G++++C ++RDP + +
Sbjct: 1 MEKTLETVPLERKKREKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKR 60
Query: 136 SKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
S+G+ FV+F AE + A+ A + R + + +
Sbjct: 61 SRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAR 99
Score = 57.8 bits (139), Expect = 3e-11
Identities = 19/93 (20%), Positives = 38/93 (40%), Gaps = 9/93 (9%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVA 59
++ Q L++G L TEE L + Q G + C V+R+P + + F+ F
Sbjct: 16 EKEQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEV 75
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQDT 92
A+ A + ++ A ++++
Sbjct: 76 DAAM-AARPHSIDGRVVEPKRA-----VAREES 102
Score = 45.8 bits (108), Expect = 3e-07
Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 7/83 (8%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK------EKGYAFVKFTTKETATHAIE 260
++ GG + EE + + +G + D V + +G+ FV F++ A+
Sbjct: 21 RKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMA 80
Query: 261 SIHNTDINGHTVKCFWGKESENN 283
+ I+G V+ E +
Sbjct: 81 A-RPHSIDGRVVEPKRAVAREES 102
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 76.8 bits (189), Expect = 4e-18
Identities = 20/98 (20%), Positives = 44/98 (44%), Gaps = 12/98 (12%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPE-IETQTLKEAFAPFGEISNCRIVRDPQTLKSKGY 139
SS P+ S +F+G+L+ ++ ++ F+ +G+I C + + G+
Sbjct: 4 GSSGKTDPRSMNSR---VFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--------GF 52
Query: 140 AFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
AFV +V + A A+ +G+ + + + N +
Sbjct: 53 AFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKV 90
Score = 70.3 bits (172), Expect = 9e-16
Identities = 23/92 (25%), Positives = 47/92 (51%), Gaps = 6/92 (6%)
Query: 3 DESQPTTLYVGNLDV-SVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAAT 61
S + +++GNL+ V + + A+FS+ G + GC V + +AF+++V+ A
Sbjct: 11 PRSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSV-----HKGFAFVQYVNERNARA 65
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPKQDTS 93
A+A + R+ + + +N A+ P +S
Sbjct: 66 AVAGEDGRMIAGQVLDINLAAEPKVNRSGPSS 97
Score = 65.3 bits (159), Expect = 4e-14
Identities = 22/98 (22%), Positives = 34/98 (34%), Gaps = 13/98 (13%)
Query: 203 SPTNCTVYCGGFGKDL-NEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIES 261
N V+ G + + V +FS +G IV V K G+AFV++ + A A+
Sbjct: 12 RSMNSRVFIGNLNTLVVKKSDVEAIFSKYGKIVGCSVHK--GFAFVQYVNERNARAAVAG 69
Query: 262 IHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNS 299
I G + A P+S
Sbjct: 70 EDGRMIAGQVLDINL----------AAEPKVNRSGPSS 97
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 73.1 bits (179), Expect = 6e-17
Identities = 24/88 (27%), Positives = 43/88 (48%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
P + + ++VG L ++ L E F G + N + +D T + +GY FV F+ +
Sbjct: 2 PISERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSE 61
Query: 148 AEAENAITAMNGQWLGSRSIRTNWSTRK 175
+A+ AI M+ L + IR N ++
Sbjct: 62 EDADYAIKIMDMIKLYGKPIRVNKASAH 89
Score = 67.0 bits (163), Expect = 1e-14
Identities = 29/84 (34%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVA 59
+ +Q T+YVG LD V+E LL LF Q GPV + ++ Y F+EF+ A
Sbjct: 5 ERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDA 64
Query: 60 ATALAAMNKRVFLEKEMKVNWASS 83
A+ M+ K ++VN AS+
Sbjct: 65 DYAIKIMDMIKLYGKPIRVNKASA 88
Score = 55.4 bits (133), Expect = 1e-10
Identities = 21/87 (24%), Positives = 42/87 (48%), Gaps = 6/87 (6%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKETAT 256
+ TVY GG + ++E L+ ++F G +V+ + K++ Y FV+F ++E A
Sbjct: 6 RNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDAD 65
Query: 257 HAIESIHNTDINGHTVKCFWGKESENN 283
+AI+ + + G ++ N
Sbjct: 66 YAIKIMDMIKLYGKPIRVNKASAHNKN 92
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 83
Score = 72.5 bits (177), Expect = 1e-16
Identities = 35/81 (43%), Positives = 53/81 (65%), Gaps = 1/81 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNC-RIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
IF+G+L PEI+ + L + F+ FG I +I+RDP T SKGYAF++F ++ AI A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 157 MNGQWLGSRSIRTNWSTRKPP 177
MNGQ+L +R I +++ +K
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
Score = 59.0 bits (142), Expect = 6e-12
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 4/82 (4%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG----NDPYAFLEFVHHTVAATALAA 65
+++GNLD + E+LL FS G + I + YAF+ F + A+ A
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 66 MNKRVFLEKEMKVNWASSPGNQ 87
MN + + + V++A ++
Sbjct: 61 MNGQYLCNRPITVSYAFKKDSK 82
Score = 51.3 bits (122), Expect = 3e-09
Identities = 17/81 (20%), Positives = 38/81 (46%), Gaps = 7/81 (8%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRV-------FKEKGYAFVKFTTKETATHAIES 261
++ G +++E+L+ FS FG I+ KGYAF+ F + + + AIE+
Sbjct: 1 IFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEA 60
Query: 262 IHNTDINGHTVKCFWGKESEN 282
++ + + + + ++
Sbjct: 61 MNGQYLCNRPITVSYAFKKDS 81
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 72.3 bits (177), Expect = 2e-16
Identities = 25/75 (33%), Positives = 41/75 (54%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG+LS + + E F+ G+I + D + G+ FV + +A+AENA+ +
Sbjct: 10 LYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYI 69
Query: 158 NGQWLGSRSIRTNWS 172
NG L R IRT+W
Sbjct: 70 NGTRLDDRIIRTDWD 84
Score = 67.3 bits (164), Expect = 8e-15
Identities = 21/82 (25%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATA 62
+ TLYVGNL TEE + LFS+ G +K + + + F+E+ A A
Sbjct: 6 KSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENA 65
Query: 63 LAAMNKRVFLEKEMKVNWASSP 84
+ +N ++ ++ +W +
Sbjct: 66 MRYINGTRLDDRIIRTDWDAGF 87
Score = 57.3 bits (138), Expect = 3e-11
Identities = 19/77 (24%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAI 259
+CT+Y G EE + ++FS G I D G+ FV++ ++ A +A+
Sbjct: 7 SCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAM 66
Query: 260 ESIHNTDINGHTVKCFW 276
I+ T ++ ++ W
Sbjct: 67 RYINGTRLDDRIIRTDW 83
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 71.6 bits (175), Expect = 2e-16
Identities = 23/81 (28%), Positives = 38/81 (46%)
Query: 96 YHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+ +F+G L + +KE FG + +V+D T SKGYAF +V + AI
Sbjct: 2 HKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIA 61
Query: 156 AMNGQWLGSRSIRTNWSTRKP 176
+NG LG + + ++
Sbjct: 62 GLNGMQLGDKKLLVQRASVGA 82
Score = 58.9 bits (142), Expect = 8e-12
Identities = 20/81 (24%), Positives = 38/81 (46%), Gaps = 3/81 (3%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFVHHTVAATALAAM 66
L++G L + ++ + L + GP+K ++++ YAF E+V V A+A +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 67 NKRVFLEKEMKVNWASSPGNQ 87
N +K++ V AS
Sbjct: 64 NGMQLGDKKLLVQRASVGAKN 84
Score = 50.0 bits (119), Expect = 1e-08
Identities = 15/82 (18%), Positives = 31/82 (37%), Gaps = 6/82 (7%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVF------KEKGYAFVKFTTKETATHAIESI 262
++ GG LN++ V ++ + FG + + KGYAF ++ AI +
Sbjct: 4 LFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGL 63
Query: 263 HNTDINGHTVKCFWGKESENNS 284
+ + + N+
Sbjct: 64 NGMQLGDKKLLVQRASVGAKNA 85
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14
{Human (Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 72.0 bits (176), Expect = 3e-16
Identities = 18/86 (20%), Positives = 36/86 (41%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
LY+ NL +T E + +F + GP++ +V P A++ + A A ++
Sbjct: 8 RILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHLS 67
Query: 68 KRVFLEKEMKVNWASSPGNQPKQDTS 93
+ + V + ++ K DT
Sbjct: 68 GFNVCNRYLVVLYYNANRAFQKMDTK 93
Score = 71.2 bits (174), Expect = 6e-16
Identities = 18/96 (18%), Positives = 44/96 (45%), Gaps = 3/96 (3%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+++ +L +I + + + F +G I R+ P+T +G A+V + +A+NA +
Sbjct: 10 LYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPET---RGTAYVVYEDIFDAKNACDHL 66
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTI 193
+G + +R + + + K++ K +
Sbjct: 67 SGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKLL 102
Score = 59.6 bits (144), Expect = 8e-12
Identities = 14/84 (16%), Positives = 30/84 (35%), Gaps = 3/84 (3%)
Query: 204 PTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE---KGYAFVKFTTKETATHAIE 260
N +Y + E + +F +G I IRV +G A+V + A +A +
Sbjct: 5 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACD 64
Query: 261 SIHNTDINGHTVKCFWGKESENNS 284
+ ++ + + +
Sbjct: 65 HLSGFNVCNRYLVVLYYNANRAFQ 88
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 71.2 bits (174), Expect = 3e-16
Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 4/85 (4%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDP---QTLKSKGYAFVSFVKKAEAENAI 154
+F+ +L+ +TLK F+ G I +C I + L S G+ FV + K +A+ A+
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 155 TAMNGQWLGSRSIRTNWSTRKP-PA 178
+ G + + S R PA
Sbjct: 61 KQLQGHTVDGHKLEVRISERATKPA 85
Score = 60.8 bits (147), Expect = 1e-12
Identities = 19/81 (23%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND------PYAFLEFVHHTVAATAL 63
L++ NL+ S TEE L +FS++G +K C + ++ + F+E+ A AL
Sbjct: 1 LFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKAL 60
Query: 64 AAMNKRVFLEKEMKVNWASSP 84
+ +++V +
Sbjct: 61 KQLQGHTVDGHKLEVRISERA 81
Score = 50.0 bits (119), Expect = 8e-09
Identities = 16/81 (19%), Positives = 30/81 (37%), Gaps = 9/81 (11%)
Query: 210 YCGGFGKDLNEELVSKVFSPFGTIVD---------IRVFKEKGYAFVKFTTKETATHAIE 260
+ EE + VFS G I V G+ FV++ E A A++
Sbjct: 2 FIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALK 61
Query: 261 SIHNTDINGHTVKCFWGKESE 281
+ ++GH ++ + +
Sbjct: 62 QLQGHTVDGHKLEVRISERAT 82
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 70.8 bits (173), Expect = 4e-16
Identities = 24/76 (31%), Positives = 38/76 (50%), Gaps = 2/76 (2%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++V +L I L F +G I I+RD T + +G AFV + K+ EA+ AI+A+
Sbjct: 9 LYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISAL 68
Query: 158 NGQWL--GSRSIRTNW 171
N GS+ +
Sbjct: 69 NNVIPEGGSQPLSVRL 84
Score = 66.9 bits (163), Expect = 8e-15
Identities = 19/84 (22%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVA 59
+ + T LYV NL ++T++ L +F + G + ++R+ AF+ + A
Sbjct: 2 ESIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEA 61
Query: 60 ATALAAMNKRVFL--EKEMKVNWA 81
A++A+N + + + V A
Sbjct: 62 QEAISALNNVIPEGGSQPLSVRLA 85
Score = 55.3 bits (133), Expect = 1e-10
Identities = 17/75 (22%), Positives = 37/75 (49%), Gaps = 6/75 (8%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETAT 256
S + +Y + + ++ + +F +G+IV + ++K G AFV++ +E A
Sbjct: 3 SIKDTNLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQ 62
Query: 257 HAIESIHNTDINGHT 271
AI +++N G +
Sbjct: 63 EAISALNNVIPEGGS 77
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 70.6 bits (172), Expect = 6e-16
Identities = 23/98 (23%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIV--------RDPQTLKSKGY 139
P +D+ N I+V L+ + L + F G + + D +T K KG
Sbjct: 2 PDEDSDNS-AIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGD 60
Query: 140 AFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
A VS+ A+ A+ +G+ ++ + + +KPP
Sbjct: 61 ATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 98
Score = 62.5 bits (151), Expect = 6e-13
Identities = 23/103 (22%), Positives = 41/103 (39%), Gaps = 16/103 (15%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG-----------NDPYAFL 51
++S + +YV L+ SVT + L F Q G VK K +P A +
Sbjct: 4 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATV 63
Query: 52 EFVHHTVAATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSN 94
+ A A+ + + F ++KV+ A + K ++
Sbjct: 64 SYEDPPTAKAAVEWFDGKDFQGSKLKVSLA-----RKKPPMNS 101
Score = 49.0 bits (116), Expect = 3e-08
Identities = 18/97 (18%), Positives = 32/97 (32%), Gaps = 14/97 (14%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTI--------------VDIRVFKEKGYAFVK 248
N +Y G + + ++ F G + +D K KG A V
Sbjct: 5 DSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVS 64
Query: 249 FTTKETATHAIESIHNTDINGHTVKCFWGKESENNST 285
+ TA A+E D G +K ++ ++
Sbjct: 65 YEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPMNS 101
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 68.5 bits (167), Expect = 2e-15
Identities = 25/74 (33%), Positives = 44/74 (59%), Gaps = 1/74 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+F+G LS + + L+E F FGE+ C ++RDP T +S+G+ FV+F+ +A + + A
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 158 NGQWLGSRSIRTNW 171
+ L S++I
Sbjct: 62 SRHELDSKTIDPKV 75
Score = 54.6 bits (131), Expect = 2e-10
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 4/75 (5%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAATALAAM 66
+++G L T+E L F Q G VK C V+R+P + F+ F+ L A
Sbjct: 3 MFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVL-AQ 61
Query: 67 NKRVFLEKEMKVNWA 81
++ K + A
Sbjct: 62 SRHELDSKTIDPKVA 76
Score = 52.7 bits (126), Expect = 7e-10
Identities = 13/74 (17%), Positives = 29/74 (39%), Gaps = 7/74 (9%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAIE 260
C ++ GG +E + + F FG + + V ++ G+ FV F + +
Sbjct: 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLA 60
Query: 261 SIHNTDINGHTVKC 274
+++ T+
Sbjct: 61 Q-SRHELDSKTIDP 73
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 69.3 bits (169), Expect = 2e-15
Identities = 26/97 (26%), Positives = 45/97 (46%), Gaps = 5/97 (5%)
Query: 83 SPGNQPKQDTS----NHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKG 138
SP +P + S + +F L+ I + L++ F+ G++ + RI+ D + +SKG
Sbjct: 2 SPVREPVDNLSPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKG 61
Query: 139 YAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRK 175
A+V F + AI + GQ L I S +
Sbjct: 62 IAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAE 97
Score = 57.7 bits (139), Expect = 3e-11
Identities = 15/87 (17%), Positives = 33/87 (37%), Gaps = 4/87 (4%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVA 59
+E T++ L + L FS +G V+ ++I + + A++EF +
Sbjct: 14 EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ-S 72
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGN 86
+ + L + V + + N
Sbjct: 73 VPLAIGLTGQRLLGVPIIVQASQAEKN 99
Score = 45.0 bits (106), Expect = 6e-07
Identities = 17/89 (19%), Positives = 34/89 (38%), Gaps = 7/89 (7%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKE 253
+ TV+C + + FS G + D+R+ + KG A+V+F +
Sbjct: 12 SPEERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQ 71
Query: 254 TATHAIESIHNTDINGHTVKCFWGKESEN 282
+ AI + + G + + +N
Sbjct: 72 SVPLAIG-LTGQRLLGVPIIVQASQAEKN 99
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 68.9 bits (168), Expect = 2e-15
Identities = 28/99 (28%), Positives = 48/99 (48%), Gaps = 6/99 (6%)
Query: 83 SPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFV 142
S GN + T + V ++ L++ F FG+I + I+ + + SKG+ FV
Sbjct: 1 SSGNSESKSTPKR--LHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNER--GSKGFGFV 56
Query: 143 SFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTN 181
+F A+A+ A ++G + R I N +T + MTN
Sbjct: 57 TFENSADADRAREKLHGTVVEGRKIEVNNATARV--MTN 93
Score = 63.2 bits (153), Expect = 3e-13
Identities = 20/92 (21%), Positives = 40/92 (43%), Gaps = 6/92 (6%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP-GNDPYAFLEFVHHTVAAT 61
+S P L+V N+ + L +F Q G + ++I G+ + F+ F + A
Sbjct: 7 SKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADR 66
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPKQDTS 93
A ++ V ++++VN A + T+
Sbjct: 67 AREKLHGTVVEGRKIEVNNA-----TARVMTN 93
Score = 49.3 bits (117), Expect = 2e-08
Identities = 18/84 (21%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE----KGYAFVKFTTKETA 255
++S T ++ + + ++F FG I+D+ + KG+ FV F A
Sbjct: 5 SESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADA 64
Query: 256 THAIESIHNTDINGHTVKCFWGKE 279
A E +H T + G ++
Sbjct: 65 DRAREKLHGTVVEGRKIEVNNATA 88
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 67.7 bits (165), Expect = 5e-15
Identities = 23/89 (25%), Positives = 39/89 (43%), Gaps = 5/89 (5%)
Query: 87 QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 146
+ Q TS+ + V L + Q LKE F+ FGE+ ++ +D +T SKG+ FV F +
Sbjct: 3 RAVQKTSD---LIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTE 59
Query: 147 KAEAENAITAMNGQWLGSRSIRTNWSTRK 175
++ + + R K
Sbjct: 60 YETQVKVMSQRHM--IDGRWCDCKLPNSK 86
Score = 56.9 bits (137), Expect = 3e-11
Identities = 15/86 (17%), Positives = 30/86 (34%), Gaps = 5/86 (5%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAAT 61
+ + L V L TE+ L FS G V +V ++ + F+ F +
Sbjct: 6 QKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVK 65
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQ 87
++ + + +S +Q
Sbjct: 66 VMSQRHM--IDGRWCDCKLPNSKQSQ 89
Score = 48.0 bits (114), Expect = 5e-08
Identities = 19/88 (21%), Positives = 36/88 (40%), Gaps = 8/88 (9%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKET 254
++ + G E+ + + FS FG ++ ++V K+ G+ FV+FT ET
Sbjct: 3 RAVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYET 62
Query: 255 ATHAIESIHNTDINGHTVKCFWGKESEN 282
+ H I+G C ++
Sbjct: 63 QVKVMSQRHM--IDGRWCDCKLPNSKQS 88
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 67.4 bits (164), Expect = 6e-15
Identities = 30/88 (34%), Positives = 43/88 (48%), Gaps = 2/88 (2%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
P S +IF+ +L I+ + L + F+ FG I +C++V D SKGY FV F +
Sbjct: 1 PSLRKSGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENG--SKGYGFVHFETQ 58
Query: 148 AEAENAITAMNGQWLGSRSIRTNWSTRK 175
AE AI MNG L R + +
Sbjct: 59 EAAERAIEKMNGMLLNDRKVFVGRFKSR 86
Score = 65.1 bits (158), Expect = 5e-14
Identities = 21/88 (23%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE-PGNDPYAFLEFVHHTVAATAL 63
S +++ NLD S+ + L FS G + CKV+ + G+ Y F+ F A A+
Sbjct: 6 SGVGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAI 65
Query: 64 AAMNKRVFLEKEMKVNWASSPGNQPKQD 91
MN + ++++ V + +++
Sbjct: 66 EKMNGMLLNDRKVFVGRF-----KSRKE 88
Score = 47.3 bits (112), Expect = 9e-08
Identities = 22/80 (27%), Positives = 35/80 (43%), Gaps = 4/80 (5%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV----FKEKGYAFVKFTTKETATHAIES 261
++ K ++ + + FS FG I+ +V KGY FV F T+E A AIE
Sbjct: 8 VGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEK 67
Query: 262 IHNTDINGHTVKCFWGKESE 281
++ +N V K +
Sbjct: 68 MNGMLLNDRKVFVGRFKSRK 87
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 66.9 bits (163), Expect = 9e-15
Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 1/76 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ V +L + ++E FA FG + + ++ +S G A V F +KA+A A+
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHY-DRSGRSLGTADVHFERKADALKAMKQY 61
Query: 158 NGQWLGSRSIRTNWST 173
NG L R + T
Sbjct: 62 NGVPLDGRPMNIQLVT 77
Score = 65.7 bits (160), Expect = 2e-14
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIRE--PGNDPYAFLEFVHHTVAATALAAMN 67
L V NLD V++ + LF++ G +K V + + A + F A A+ N
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 68 KRVFLEKEMKVNWASS 83
+ M + +S
Sbjct: 63 GVPLDGRPMNIQLVTS 78
Score = 50.3 bits (120), Expect = 5e-09
Identities = 13/71 (18%), Positives = 29/71 (40%), Gaps = 5/71 (7%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFVKFTTKETATHAIESIH 263
+ +++ + ++F+ FGT+ V + G A V F K A A++ +
Sbjct: 3 LLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYN 62
Query: 264 NTDINGHTVKC 274
++G +
Sbjct: 63 GVPLDGRPMNI 73
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 66.6 bits (162), Expect = 1e-14
Identities = 26/89 (29%), Positives = 41/89 (46%), Gaps = 8/89 (8%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALA 64
S LYV NL +S +EE++ F+ I P +V + YAF+ F + A A+
Sbjct: 6 SSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKK---IRDYAFVHFSNREDAVEAMK 62
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTS 93
A+N +V ++V A +P S
Sbjct: 63 ALNGKVLDGSPIEVTLA-----KPVDKDS 86
Score = 61.6 bits (149), Expect = 8e-13
Identities = 19/77 (24%), Positives = 38/77 (49%)
Query: 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDI 267
+Y +EE++ K F+ RV K + YAFV F+ +E A A+++++ +
Sbjct: 10 ILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKIRDYAFVHFSNREDAVEAMKALNGKVL 69
Query: 268 NGHTVKCFWGKESENNS 284
+G ++ K + +S
Sbjct: 70 DGSPIEVTLAKPVDKDS 86
Score = 57.3 bits (138), Expect = 2e-11
Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 6/79 (7%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++V +L + +++ F + R+ K + YAFV F + +A A+ A+
Sbjct: 11 LYVRNLMLSTSEEMIEKEFNNIKPGAVERVK------KIRDYAFVHFSNREDAVEAMKAL 64
Query: 158 NGQWLGSRSIRTNWSTRKP 176
NG+ L I +
Sbjct: 65 NGKVLDGSPIEVTLAKPVD 83
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 66.3 bits (161), Expect = 1e-14
Identities = 29/84 (34%), Positives = 44/84 (52%), Gaps = 2/84 (2%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
GN+ D + + V LS + L+E F+ +G I++ IV D Q+ +S+G+AFV F
Sbjct: 1 GNRANPDPNCC--LGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYF 58
Query: 145 VKKAEAENAITAMNGQWLGSRSIR 168
+A+ A NG L R IR
Sbjct: 59 ENVDDAKEAKERANGMELDGRRIR 82
Score = 52.4 bits (125), Expect = 1e-09
Identities = 17/79 (21%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVA 59
+ L V L + TE L +FS+ GP+ ++ + + +AF+ F + A
Sbjct: 5 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDA 64
Query: 60 ATALAAMNKRVFLEKEMKV 78
A N + ++V
Sbjct: 65 KEAKERANGMELDGRRIRV 83
Score = 50.9 bits (121), Expect = 4e-09
Identities = 21/81 (25%), Positives = 39/81 (48%), Gaps = 7/81 (8%)
Query: 200 NQSSPT-NCTVYCGGFGKDLNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTK 252
N+++P NC + G E + +VFS +G I D + + +G+AFV F
Sbjct: 2 NRANPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENV 61
Query: 253 ETATHAIESIHNTDINGHTVK 273
+ A A E + +++G ++
Sbjct: 62 DDAKEAKERANGMELDGRRIR 82
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 66.2 bits (161), Expect = 2e-14
Identities = 23/76 (30%), Positives = 43/76 (56%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ V L ++ + L F G I+ CRI+RD +T S GYAFV F + +++ AI +
Sbjct: 5 LIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVL 64
Query: 158 NGQWLGSRSIRTNWST 173
NG + ++ ++ +++
Sbjct: 65 NGITVRNKRLKVSYAR 80
Score = 63.5 bits (154), Expect = 2e-13
Identities = 26/81 (32%), Positives = 42/81 (51%), Gaps = 4/81 (4%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALA 64
T L V L +T+ L ALF IGP+ C+++R+ + YAF++F + A+
Sbjct: 3 TNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIK 62
Query: 65 AMNKRVFLEKEMKVNWASSPG 85
+N K +KV++A PG
Sbjct: 63 VLNGITVRNKRLKVSYA-RPG 82
Score = 50.8 bits (121), Expect = 4e-09
Identities = 16/80 (20%), Positives = 36/80 (45%), Gaps = 6/80 (7%)
Query: 205 TNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHA 258
+N + +D+ + + +F G I R+ ++ GYAFV FT++ + A
Sbjct: 1 SNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRA 60
Query: 259 IESIHNTDINGHTVKCFWGK 278
I+ ++ + +K + +
Sbjct: 61 IKVLNGITVRNKRLKVSYAR 80
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 65.8 bits (160), Expect = 2e-14
Identities = 30/80 (37%), Positives = 46/80 (57%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG L+ E++ + L AF PFG+I++ +I D +T K +G+AFV F +A AI M
Sbjct: 8 LYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNM 67
Query: 158 NGQWLGSRSIRTNWSTRKPP 177
N L R+IR N +
Sbjct: 68 NESELFGRTIRVNLAKPMRI 87
Score = 57.7 bits (139), Expect = 2e-11
Identities = 23/89 (25%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAAT 61
+ LYVG L V +++L A F G + ++ + +AF+EF AA
Sbjct: 3 TTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAA 62
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPKQ 90
A+ MN+ + ++VN A +P +
Sbjct: 63 AIDNMNESELFGRTIRVNLA-----KPMR 86
Score = 52.4 bits (125), Expect = 1e-09
Identities = 23/82 (28%), Positives = 45/82 (54%), Gaps = 6/82 (7%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETAT 256
+ T +Y GG ++++++++ F PFG I D K +G+AFV+F E A
Sbjct: 2 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAA 61
Query: 257 HAIESIHNTDINGHTVKCFWGK 278
AI++++ +++ G T++ K
Sbjct: 62 AAIDNMNESELFGRTIRVNLAK 83
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 66.2 bits (161), Expect = 2e-14
Identities = 17/82 (20%), Positives = 35/82 (42%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALA 64
+ +YVGNL + + + +F + G ++ + G P+AF+EF A A+
Sbjct: 12 NNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVY 71
Query: 65 AMNKRVFLEKEMKVNWASSPGN 86
+ + ++V + S
Sbjct: 72 GRDGYDYDGYRLRVEFPRSGRG 93
Score = 59.3 bits (143), Expect = 6e-12
Identities = 19/81 (23%), Positives = 36/81 (44%), Gaps = 3/81 (3%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
I+VG+L P+I T+ +++ F +G I + + +AFV F +AE+A+
Sbjct: 17 IYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGG---PPFAFVEFEDPRDAEDAVYGR 73
Query: 158 NGQWLGSRSIRTNWSTRKPPA 178
+G +R +
Sbjct: 74 DGYDYDGYRLRVEFPRSGRGT 94
Score = 57.0 bits (137), Expect = 4e-11
Identities = 18/85 (21%), Positives = 34/85 (40%), Gaps = 3/85 (3%)
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDI---RVFKEKGYAFVKFTTKETATHA 258
+ +C +Y G D+ + + VF +G I DI +AFV+F A A
Sbjct: 10 AGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDA 69
Query: 259 IESIHNTDINGHTVKCFWGKESENN 283
+ D +G+ ++ + +
Sbjct: 70 VYGRDGYDYDGYRLRVEFPRSGRGT 94
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 65.8 bits (160), Expect = 3e-14
Identities = 19/82 (23%), Positives = 37/82 (45%), Gaps = 3/82 (3%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALA 64
+Q + L+VGNL +TEE + LF + G + + + F+ T+A A
Sbjct: 6 TQRSRLFVGNLPPDITEEEMRKLFEKYGK---AGEVFIHKDKGFGFIRLETRTLAEIAKV 62
Query: 65 AMNKRVFLEKEMKVNWASSPGN 86
++ K+++V +A +
Sbjct: 63 ELDNMPLRGKQLRVRFACHSAS 84
Score = 63.4 bits (154), Expect = 1e-13
Identities = 16/88 (18%), Positives = 38/88 (43%), Gaps = 6/88 (6%)
Query: 89 KQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKA 148
++ + +FVG+L P+I + +++ F +G+ I +D + F+ +
Sbjct: 2 EKTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKG------FGFIRLETRT 55
Query: 149 EAENAITAMNGQWLGSRSIRTNWSTRKP 176
AE A ++ L + +R ++
Sbjct: 56 LAEIAKVELDNMPLRGKQLRVRFACHSA 83
Score = 56.1 bits (135), Expect = 5e-11
Identities = 17/78 (21%), Positives = 38/78 (48%)
Query: 207 CTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTD 266
++ G D+ EE + K+F +G ++ + K+KG+ F++ T+ A A + N
Sbjct: 9 SRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKDKGFGFIRLETRTLAEIAKVELDNMP 68
Query: 267 INGHTVKCFWGKESENNS 284
+ G ++ + S + +
Sbjct: 69 LRGKQLRVRFACHSASLT 86
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 65.5 bits (159), Expect = 3e-14
Identities = 24/77 (31%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++V L + + L++ F+ +G I RI+ D T S+G F+ F K+ EAE AI +
Sbjct: 9 LYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGL 68
Query: 158 NGQWLG--SRSIRTNWS 172
NGQ + I ++
Sbjct: 69 NGQKPSGATEPITVKFA 85
Score = 59.7 bits (144), Expect = 3e-12
Identities = 18/79 (22%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAATALA 64
LYV L ++T++ L LFSQ G + +++ + + F+ F A A+
Sbjct: 7 ANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIK 66
Query: 65 AMNKRVFL--EKEMKVNWA 81
+N + + + V +A
Sbjct: 67 GLNGQKPSGATEPITVKFA 85
Score = 57.4 bits (138), Expect = 2e-11
Identities = 17/78 (21%), Positives = 38/78 (48%), Gaps = 6/78 (7%)
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETA 255
+S + +Y G K + ++ + ++FS +G I+ R+ ++ G F++F + A
Sbjct: 2 ASIRDANLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEA 61
Query: 256 THAIESIHNTDINGHTVK 273
AI+ ++ +G T
Sbjct: 62 EEAIKGLNGQKPSGATEP 79
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 65.1 bits (158), Expect = 4e-14
Identities = 27/88 (30%), Positives = 45/88 (51%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
P + ++ I V +LS + L+E F PFG IS + +D T +SKG+AF+SF ++
Sbjct: 1 PNRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRR 60
Query: 148 AEAENAITAMNGQWLGSRSIRTNWSTRK 175
+A AI ++G + W+
Sbjct: 61 EDAARAIAGVSGFGYDHLILNVEWAKPS 88
Score = 58.9 bits (142), Expect = 6e-12
Identities = 20/87 (22%), Positives = 34/87 (39%), Gaps = 8/87 (9%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALA 64
T+ V NL E L LF G + + ++ +AF+ F AA A+A
Sbjct: 9 ATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIA 68
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQD 91
++ + + V WA +P +
Sbjct: 69 GVSGFGYDHLILNVEWA-----KPSTN 90
Score = 54.3 bits (130), Expect = 3e-10
Identities = 24/89 (26%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKE 253
N+ + N T+ +D E + ++F PFG+I I + K+K +AF+ F +E
Sbjct: 2 NRRADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRRE 61
Query: 254 TATHAIESIHNTDINGHTVKCFWGKESEN 282
A AI + + + W K S N
Sbjct: 62 DAARAIAGVSGFGYDHLILNVEWAKPSTN 90
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 99
Score = 65.5 bits (159), Expect = 5e-14
Identities = 27/87 (31%), Positives = 42/87 (48%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
+S +FV +LS + L++ F+ +G +S D T K KG+AFV+F+ A
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64
Query: 152 NAITAMNGQWLGSRSIRTNWSTRKPPA 178
A ++GQ R + ST K A
Sbjct: 65 KAYAEVDGQVFQGRMLHVLPSTIKKEA 91
Score = 58.6 bits (141), Expect = 1e-11
Identities = 23/92 (25%), Positives = 39/92 (42%), Gaps = 3/92 (3%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREP---GNDPYAFLEFVHHTVAAT 61
S L+V NL + +EE L LFS GP+ + +AF+ F+ A
Sbjct: 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVK 65
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPKQDTS 93
A A ++ +VF + + V ++ + S
Sbjct: 66 AYAEVDGQVFQGRMLHVLPSTIKKEASQSGPS 97
Score = 47.8 bits (113), Expect = 7e-08
Identities = 19/95 (20%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETAT 256
S + ++ +EE + K+FS +G + ++ + G+AFV F E A
Sbjct: 5 SSGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAV 64
Query: 257 HAIESIHNTDINGHTVKCFWGKESENNSTLAQPSA 291
A + G + + S + PS+
Sbjct: 65 KAYAEVDGQVFQGRMLHVLPSTIKKEASQ-SGPSS 98
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 64.7 bits (157), Expect = 8e-14
Identities = 28/107 (26%), Positives = 49/107 (45%), Gaps = 5/107 (4%)
Query: 78 VNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSK 137
+ S +++ ++F+ L E Q L + F PFG + + ++ D QT SK
Sbjct: 1 LTQQSIGAAGSQKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSK 60
Query: 138 GYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERK 184
+ FVS+ A+ AI +MNG +G + ++ K N+ K
Sbjct: 61 CFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSK-----NDSK 102
Score = 52.0 bits (124), Expect = 2e-09
Identities = 18/92 (19%), Positives = 36/92 (39%), Gaps = 8/92 (8%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVA 59
+ + L++ +L ++ L +F G V KV + + + F+ + + A
Sbjct: 14 EGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSA 73
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQPKQD 91
A+ +MN K +KV + K D
Sbjct: 74 QAAIQSMNGFQIGMKRLKVQLK-----RSKND 100
Score = 47.8 bits (113), Expect = 8e-08
Identities = 17/90 (18%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF------KEKGYAFVKFTTKE 253
+ P ++ ++ ++ + ++F PFG +V +VF K + FV +
Sbjct: 12 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPV 71
Query: 254 TATHAIESIHNTDINGHTVKCFWGKESENN 283
+A AI+S++ I +K + ++
Sbjct: 72 SAQAAIQSMNGFQIGMKRLKVQLKRSKNDS 101
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 63.4 bits (154), Expect = 1e-13
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFVG LSP+ + ++E F FGE+ + + D +T K +G+ F++F ++ + +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIM-EK 60
Query: 158 NGQWLGSRSIR 168
+G
Sbjct: 61 KYHNVGLSKCE 71
Score = 50.0 bits (119), Expect = 8e-09
Identities = 11/75 (14%), Positives = 24/75 (32%), Gaps = 4/75 (5%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAAM 66
++VG L EE + F G V+ ++ + + F+ F +
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEKK 61
Query: 67 NKRVFLEKEMKVNWA 81
+ ++ A
Sbjct: 62 YH-NVGLSKCEIKVA 75
Score = 48.8 bits (116), Expect = 2e-08
Identities = 13/72 (18%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKETATHAIESI 262
++ GG D EE + + F FG + I + + + F+ F +E +E
Sbjct: 2 IFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIMEK- 60
Query: 263 HNTDINGHTVKC 274
++ +
Sbjct: 61 KYHNVGLSKCEI 72
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 63.1 bits (153), Expect = 1e-13
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+F+G LS + + LK+ F+ FGE+ +C + DP T +S+G+ FV F + + +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQ 60
Query: 158 NGQWLGSRSIR 168
L + I
Sbjct: 61 KEHKLNGKVID 71
Score = 45.7 bits (108), Expect = 2e-07
Identities = 14/75 (18%), Positives = 27/75 (36%), Gaps = 4/75 (5%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAAM 66
+++G L T++ L FS+ G V C + +P + F+ F +
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVM-DQ 60
Query: 67 NKRVFLEKEMKVNWA 81
+ K + A
Sbjct: 61 KEHKLNGKVIDPKRA 75
Score = 44.6 bits (105), Expect = 6e-07
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 7/72 (9%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKETATHAIESI 262
++ GG D ++ + FS FG +VD + + + FV F E+ ++
Sbjct: 2 MFIGGLSWDTTKKDLKDYFSKFGEVVDCTLKLDPITGRSRGFGFVLFKESESVDKVMDQ- 60
Query: 263 HNTDINGHTVKC 274
+NG +
Sbjct: 61 KEHKLNGKVIDP 72
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly (Drosophila
melanogaster) [TaxId: 7227]}
Length = 88
Score = 63.2 bits (153), Expect = 2e-13
Identities = 26/88 (29%), Positives = 45/88 (51%), Gaps = 1/88 (1%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
P++ + +FV + E + ++E F +GEI N + D +T SKGYA V +
Sbjct: 1 PQRSVEG-WILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETH 59
Query: 148 AEAENAITAMNGQWLGSRSIRTNWSTRK 175
+A A A+NG + ++I+ +W K
Sbjct: 60 KQALAAKEALNGAEIMGQTIQVDWCFVK 87
Score = 58.2 bits (140), Expect = 1e-11
Identities = 17/83 (20%), Positives = 35/83 (42%), Gaps = 3/83 (3%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATA 62
+ L+V ++ E+ + F G +K + + + YA +E+ H A A
Sbjct: 6 EGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAA 65
Query: 63 LAAMNKRVFLEKEMKVNWASSPG 85
A+N + + ++V+W G
Sbjct: 66 KEALNGAEIMGQTIQVDWCFVKG 88
Score = 46.3 bits (109), Expect = 2e-07
Identities = 17/85 (20%), Positives = 38/85 (44%), Gaps = 6/85 (7%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGY------AFVKFTTKET 254
Q S ++ ++ E+ + + F +G I +I + ++ A V++ T +
Sbjct: 2 QRSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQ 61
Query: 255 ATHAIESIHNTDINGHTVKCFWGKE 279
A A E+++ +I G T++ W
Sbjct: 62 ALAAKEALNGAEIMGQTIQVDWCFV 86
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 91
Score = 63.1 bits (153), Expect = 2e-13
Identities = 19/79 (24%), Positives = 39/79 (49%), Gaps = 1/79 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAP-FGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
I++ +L+ +I+ LK++ F + ++LK +G AFV F + + A NA+ +
Sbjct: 6 IYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRS 65
Query: 157 MNGQWLGSRSIRTNWSTRK 175
M G + +R ++
Sbjct: 66 MQGFPFYDKPMRIQYAKTD 84
Score = 61.6 bits (149), Expect = 8e-13
Identities = 23/86 (26%), Positives = 42/86 (48%), Gaps = 5/86 (5%)
Query: 6 QPT-TLYVGNLDVSVTEELLC----ALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAA 60
+P T+Y+ NL+ + ++ L A+FS+ G + V R AF+ F + A
Sbjct: 1 RPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSAT 60
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGN 86
AL +M F +K M++ +A + +
Sbjct: 61 NALRSMQGFPFYDKPMRIQYAKTDSD 86
Score = 54.3 bits (130), Expect = 3e-10
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 7/84 (8%)
Query: 206 NCTVYCGGFGKDLNEE----LVSKVFSPFGTIVDIRVFKE---KGYAFVKFTTKETATHA 258
N T+Y + + ++ + +FS FG I+DI V + +G AFV F +AT+A
Sbjct: 3 NHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNA 62
Query: 259 IESIHNTDINGHTVKCFWGKESEN 282
+ S+ ++ + K +
Sbjct: 63 LRSMQGFPFYDKPMRIQYAKTDSD 86
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 63.5 bits (154), Expect = 3e-13
Identities = 16/98 (16%), Positives = 36/98 (36%), Gaps = 6/98 (6%)
Query: 97 HIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
I V +L + L + F+ FG + ++ A + + A++A +
Sbjct: 9 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTK----NNQFQALLQYADPVSAQHAKLS 64
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTIT 194
++GQ + + K ++ K N ++ T
Sbjct: 65 LDGQNIYNACCTLRIDFSKLTSL--NVKYNNDKSRDYT 100
Score = 57.3 bits (138), Expect = 4e-11
Identities = 17/83 (20%), Positives = 31/83 (37%), Gaps = 1/83 (1%)
Query: 1 MCDESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAA 60
M +S + V NL VT ++L +FS+ G V + A L++ A
Sbjct: 1 MAGQSPVLRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQF-QALLQYADPVSAQ 59
Query: 61 TALAAMNKRVFLEKEMKVNWASS 83
A +++ + + S
Sbjct: 60 HAKLSLDGQNIYNACCTLRIDFS 82
Score = 45.4 bits (107), Expect = 7e-07
Identities = 16/79 (20%), Positives = 36/79 (45%), Gaps = 4/79 (5%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVF--KEKGYAFVKFTTKETATHAIESIHNTD 266
+ + +++ ++FS FGT++ I F + A +++ +A HA S+ +
Sbjct: 10 IIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQN 69
Query: 267 I--NGHTVKCFWGKESENN 283
I T++ + K + N
Sbjct: 70 IYNACCTLRIDFSKLTSLN 88
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 104
Score = 63.3 bits (153), Expect = 3e-13
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 5/102 (4%)
Query: 203 SPTNCTVYCG-----GFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATH 257
S + + F + +F + + FK + F+ +A
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFKRVRINFSNPLSAAD 61
Query: 258 AIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNS 299
A +H T+ G +K ++ + S+ P P P+S
Sbjct: 62 ARLRLHKTEFLGKEMKLYFAQTLHIGSSHLAPPNPDKSGPSS 103
Score = 56.3 bits (135), Expect = 7e-11
Identities = 23/107 (21%), Positives = 35/107 (32%), Gaps = 13/107 (12%)
Query: 4 ESQPTTLYVGNLDVSVTEE-----LLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTV 58
S + L + V E +LF + + + F +
Sbjct: 2 SSGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK---RVRINFSNPLS 58
Query: 59 AATALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSP 105
AA A ++K FL KEMK+ +A Q S+H D S
Sbjct: 59 AADARLRLHKTEFLGKEMKLYFA-----QTLHIGSSHLAPPNPDKSG 100
Score = 52.5 bits (125), Expect = 2e-09
Identities = 6/85 (7%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 98 IFVGDLSPEIETQT-----LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152
+ + ++ +++ + F + + + + KS ++F A +
Sbjct: 8 LIACVANDDVFSESETRAKFESLFRTYDKDTTFQY------FKSFKRVRINFSNPLSAAD 61
Query: 153 AITAMNGQWLGSRSIRTNWSTRKPP 177
A ++ + ++ ++
Sbjct: 62 ARLRLHKTEFLGKEMKLYFAQTLHI 86
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein 1
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 62.1 bits (150), Expect = 7e-13
Identities = 29/91 (31%), Positives = 43/91 (47%), Gaps = 2/91 (2%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
+ ++DT+ IFVG L +L++ F FG+I ++ D QT KS+GY FV+
Sbjct: 2 HGSQKDTTFT-KIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMA 60
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWSTRKP 176
+A AE A N G R N +
Sbjct: 61 DRAAAERACKDPNPIIDG-RKANVNLAYLGA 90
Score = 56.7 bits (136), Expect = 6e-11
Identities = 20/96 (20%), Positives = 36/96 (37%), Gaps = 5/96 (5%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAA 60
++ T ++VG L T+ L F G ++ VI + + Y F+ A
Sbjct: 7 DTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQPKQDTSNHY 96
A N + ++ VN A G +P+ +
Sbjct: 67 RACKDPNP-IIDGRKANVNLA-YLGAKPRSLQTGFA 100
Score = 42.4 bits (99), Expect = 6e-06
Identities = 21/104 (20%), Positives = 33/104 (31%), Gaps = 16/104 (15%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKET 254
Q T ++ GG + + K F FG I + V ++ GY FV +
Sbjct: 5 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAA 64
Query: 255 ATHAIESIHNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPN 298
A A + N I+G + P + Q
Sbjct: 65 AERACKD-PNPIIDGRKANVNLAYL---------GAKPRSLQTG 98
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 62.0 bits (150), Expect = 7e-13
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ +LS I LKE F I Q KSKG A++ F +A+AE +
Sbjct: 19 LLAKNLSFNITEDELKEVFEDA-----LEIRLVSQDGKSKGIAYIEFKSEADAEKNLEEK 73
Query: 158 NGQWLGSRSIRTNWSTRK 175
G + RS+ ++ K
Sbjct: 74 QGAEIDGRSVSLYYTGEK 91
Score = 61.6 bits (149), Expect = 9e-13
Identities = 15/86 (17%), Positives = 29/86 (33%), Gaps = 2/86 (2%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATA 62
TL NL ++TE+ L +F + V ++ + A++EF A
Sbjct: 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEI--RLVSQDGKSKGIAYIEFKSEADAEKN 69
Query: 63 LAAMNKRVFLEKEMKVNWASSPGNQP 88
L + + + + G
Sbjct: 70 LEEKQGAEIDGRSVSLYYTGEKGGTR 95
Score = 52.0 bits (124), Expect = 2e-09
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)
Query: 196 DEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK-EKGYAFVKFTTKET 254
D ++ T+ ++ E+ + +VF I + KG A+++F ++
Sbjct: 6 DPCTSKKVRAARTLLAKNLSFNITEDELKEVFEDALEIRLVSQDGKSKGIAYIEFKSEAD 65
Query: 255 ATHAIESIHNTDINGHTVKCFWGKESENNS 284
A +E +I+G +V ++ E
Sbjct: 66 AEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 61.3 bits (148), Expect = 1e-12
Identities = 24/75 (32%), Positives = 44/75 (58%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ V L + + + F GEI +C++VRD T +S GY FV+++ +AE AI +
Sbjct: 5 LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTL 64
Query: 158 NGQWLGSRSIRTNWS 172
NG L +++I+ +++
Sbjct: 65 NGLRLQTKTIKVSYA 79
Score = 57.0 bits (137), Expect = 3e-11
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALA 64
T L V L ++T+E +LF IG ++ CK++R+ Y F+ ++ A A+
Sbjct: 3 TNLIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAIN 62
Query: 65 AMNKRVFLEKEMKVNWA 81
+N K +KV++A
Sbjct: 63 TLNGLRLQTKTIKVSYA 79
Score = 43.6 bits (102), Expect = 2e-06
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 8/84 (9%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETAT 256
S TN + +++ +E +F G I ++ ++K GY FV + + A
Sbjct: 1 SKTN--LIVNYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAE 58
Query: 257 HAIESIHNTDINGHTVKCFWGKES 280
AI +++ + T+K + + S
Sbjct: 59 KAINTLNGLRLQTKTIKVSYARPS 82
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 61.3 bits (148), Expect = 1e-12
Identities = 28/79 (35%), Positives = 52/79 (65%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+FVG LS + Q+L++ F+ +G+IS +V+D +T +S+G+ FV+F +A++A+ AM
Sbjct: 8 LFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAM 67
Query: 158 NGQWLGSRSIRTNWSTRKP 176
NG+ + R IR + + +
Sbjct: 68 NGKSVDGRQIRVDQAGKSS 86
Score = 50.9 bits (121), Expect = 4e-09
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 8/91 (8%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAA 60
S L+VG L E+ L +FS+ G + V+++ + F+ F + A
Sbjct: 2 ASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAK 61
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQPKQD 91
A+ AMN + ++++V+ A D
Sbjct: 62 DAMMAMNGKSVDGRQIRVDQA-----GKSSD 87
Score = 48.6 bits (115), Expect = 3e-08
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 6/84 (7%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAI 259
++ GG D NE+ + +VFS +G I ++ V K+ +G+ FV F + A A+
Sbjct: 5 EGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAM 64
Query: 260 ESIHNTDINGHTVKCFWGKESENN 283
+++ ++G ++ +S +N
Sbjct: 65 MAMNGKSVDGRQIRVDQAGKSSDN 88
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 61.2 bits (148), Expect = 1e-12
Identities = 15/83 (18%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNC--RIVRDPQTLKSKGYAFVSFVKKAEAENAIT 155
+F+G + + + + E A E +K++G+AFV + A A
Sbjct: 4 LFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARR 63
Query: 156 AMNGQ--WLGSRSIRTNWSTRKP 176
+ L I +W+ +
Sbjct: 64 KLMPGRIQLWGHQIAVDWAEPEI 86
Score = 54.7 bits (131), Expect = 2e-10
Identities = 16/92 (17%), Positives = 32/92 (34%), Gaps = 8/92 (8%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPV-KGCKVIREPGNDP----YAFLEFVHHTVAATA 62
L++G + E + +++ V + +AF+E+ H AA A
Sbjct: 2 CRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMA 61
Query: 63 LAAMNKRVFL--EKEMKVNWASSPGNQPKQDT 92
+ ++ V+WA P +D
Sbjct: 62 RRKLMPGRIQLWGHQIAVDWA-EPEIDVDEDV 92
Score = 51.2 bits (122), Expect = 4e-09
Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 12/95 (12%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRV--------FKEKGYAFVKFTTKETATH 257
NC ++ GG K E + + + V + K +G+AFV++ + A
Sbjct: 1 NCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAM 60
Query: 258 AIESIHNTDI--NGHTVKCFWG--KESENNSTLAQ 288
A + I GH + W + + +
Sbjct: 61 ARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET 95
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 60.1 bits (145), Expect = 2e-12
Identities = 17/74 (22%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFVG LS + +K F FG++ + ++ D T + +G+ FV+F + E +
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVC-EI 60
Query: 158 NGQWLGSRSIRTNW 171
+ + ++ +
Sbjct: 61 HFHEINNKMVECKK 74
Score = 50.9 bits (121), Expect = 4e-09
Identities = 14/74 (18%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAA--MN 67
++VG L V+ T E + F Q G V ++ + + + FV ++
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCEIH 61
Query: 68 KRVFLEKEMKVNWA 81
K ++ A
Sbjct: 62 FHEINNKMVECKKA 75
Score = 40.5 bits (94), Expect = 2e-05
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 7/72 (9%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKETATHAIESI 262
++ GG + E V F FG + D + +K + FV F +++ E I
Sbjct: 2 IFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-I 60
Query: 263 HNTDINGHTVKC 274
H +IN V+C
Sbjct: 61 HFHEINNKMVEC 72
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 59.8 bits (144), Expect = 3e-12
Identities = 15/86 (17%), Positives = 32/86 (37%), Gaps = 7/86 (8%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRI-----VRDPQTLKSKGYAFVSFVKKAEAEN 152
++VG++ I + + + F + V Q + K +AF+ F E
Sbjct: 4 LYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETTQ 63
Query: 153 AITAMNGQWLGSRSIRTNW-STRKPP 177
A+ +G +S++ +P
Sbjct: 64 AMA-FDGIIFQGQSLKIRRPHDYQPL 88
Score = 49.0 bits (116), Expect = 3e-08
Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 9/88 (10%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG--------NDPYAFLEFVHHTVAA 60
LYVGN+ +TEE + F+ + G + +AFLEF
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQP 88
A+ A + +F + +K+ P
Sbjct: 63 QAM-AFDGIIFQGQSLKIRRPHDYQPLP 89
Score = 44.7 bits (105), Expect = 8e-07
Identities = 13/83 (15%), Positives = 30/83 (36%), Gaps = 12/83 (14%)
Query: 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF-----------KEKGYAFVKFTTKETAT 256
+Y G + EE + F+ + + ++K +AF++F + + T
Sbjct: 3 RLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSVDETT 62
Query: 257 HAIESIHNTDINGHTVKCFWGKE 279
A+ G ++K +
Sbjct: 63 QAMA-FDGIIFQGQSLKIRRPHD 84
>d1wi8a_ d.58.7.1 (A:) Eukaryotic translation initiation factor 4B
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 59.4 bits (143), Expect = 8e-12
Identities = 19/96 (19%), Positives = 42/96 (43%), Gaps = 1/96 (1%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
SS + + S Y F+G+L ++ +++KE F + + KG+ +
Sbjct: 2 SSGSSGSRLPKSPPYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGY 61
Query: 142 VSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
F +A+ ++N + LG++ IR + + +
Sbjct: 62 AEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96
Score = 54.0 bits (129), Expect = 6e-10
Identities = 17/89 (19%), Positives = 33/89 (37%), Gaps = 2/89 (2%)
Query: 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAA- 65
P T ++GNL VTEE + F + + + + L+A
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL 74
Query: 66 -MNKRVFLEKEMKVNWASSPGNQPKQDTS 93
+N+ K ++V+ A ++ +S
Sbjct: 75 SLNEESLGNKRIRVDVADQAQDKDSGPSS 103
Score = 37.0 bits (85), Expect = 6e-04
Identities = 10/86 (11%), Positives = 31/86 (36%), Gaps = 7/86 (8%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAI 259
T + G D+ EE + + F + KG+ + +F ++ +
Sbjct: 15 PYTAFLGNLPYDVTEESIKEFFRGLNISAVRLPREPSNPERLKGFGYAEFEDLDSL-LSA 73
Query: 260 ESIHNTDINGHTVKCFWGKESENNST 285
S++ + ++ ++++ +
Sbjct: 74 LSLNEESLGNKRIRVDVADQAQDKDS 99
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 58.5 bits (141), Expect = 8e-12
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+F+G LS E ++L+ F +G +++C ++RDP T +S+G+ FV++ E + A+
Sbjct: 9 LFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAM-NA 67
Query: 158 NGQWLGSRSIRTNW 171
+ R +
Sbjct: 68 RPHKVDGRVVEPKR 81
Score = 55.0 bits (132), Expect = 2e-10
Identities = 19/84 (22%), Positives = 34/84 (40%), Gaps = 4/84 (4%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND---PYAFLEFVHHTVA 59
+ Q L++G L T+E L + F Q G + C V+R+P + F+ +
Sbjct: 2 EPEQLRKLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEV 61
Query: 60 ATALAAMNKRVFLEKEMKVNWASS 83
A+ A + ++ A S
Sbjct: 62 DAAMNARPH-KVDGRVVEPKRAVS 84
Score = 47.3 bits (112), Expect = 7e-08
Identities = 16/73 (21%), Positives = 33/73 (45%), Gaps = 7/73 (9%)
Query: 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETATHAIES 261
++ GG + +E + F +GT+ D V ++ +G+ FV + T E A+ +
Sbjct: 8 KLFIGGLSFETTDESLRSHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA 67
Query: 262 IHNTDINGHTVKC 274
++G V+
Sbjct: 68 -RPHKVDGRVVEP 79
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 57.8 bits (139), Expect = 2e-11
Identities = 15/74 (20%), Positives = 32/74 (43%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
I V ++ + + + F + I ++ + G A V+F + EA A+ +
Sbjct: 12 IKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDL 71
Query: 158 NGQWLGSRSIRTNW 171
N + +GSR ++
Sbjct: 72 NDRPIGSRKVKLVL 85
Score = 55.8 bits (134), Expect = 8e-11
Identities = 14/81 (17%), Positives = 31/81 (38%), Gaps = 3/81 (3%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAA 60
+ PT + V N+ +V+ + + F + G ++ A + F A
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 65
Query: 61 TALAAMNKRVFLEKEMKVNWA 81
A+ +N R +++K+
Sbjct: 66 AAVIDLNDRPIGSRKVKLVLG 86
Score = 45.0 bits (106), Expect = 6e-07
Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 6/81 (7%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE------KGYAFVKFTTKETAT 256
P + ++ + + F + I K G A V F +++ AT
Sbjct: 6 KPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEAT 65
Query: 257 HAIESIHNTDINGHTVKCFWG 277
A+ +++ I VK G
Sbjct: 66 AAVIDLNDRPIGSRKVKLVLG 86
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 57.4 bits (138), Expect = 2e-11
Identities = 24/86 (27%), Positives = 42/86 (48%), Gaps = 9/86 (10%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNK 68
LY+GNL +VT + L LF +V+ + G YAF+++ A A+ ++
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSG---YAFVDYPDQNWAIRAIETLSG 59
Query: 69 RVFLE-KEMKVNWASSPGNQPKQDTS 93
+V L K M+V+++ K+ S
Sbjct: 60 KVELHGKIMEVDYS-----VSKKLRS 80
Score = 56.2 bits (135), Expect = 6e-11
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 7/81 (8%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+++G+LSP + L++ F Q L GYAFV + + A AI +
Sbjct: 4 LYIGNLSPAVTADDLRQLFGDRKLP------LAGQVLLKSGYAFVDYPDQNWAIRAIETL 57
Query: 158 NGQW-LGSRSIRTNWSTRKPP 177
+G+ L + + ++S K
Sbjct: 58 SGKVELHGKIMEVDYSVSKKL 78
Score = 53.5 bits (128), Expect = 4e-10
Identities = 15/78 (19%), Positives = 35/78 (44%), Gaps = 1/78 (1%)
Query: 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIH-NTD 266
+Y G + + + ++F + +V + GYAFV + + A AIE++ +
Sbjct: 3 KLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLLKSGYAFVDYPDQNWAIRAIETLSGKVE 62
Query: 267 INGHTVKCFWGKESENNS 284
++G ++ + + S
Sbjct: 63 LHGKIMEVDYSVSKKLRS 80
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 81
Score = 57.1 bits (137), Expect = 3e-11
Identities = 9/75 (12%), Positives = 31/75 (41%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+++ + P + +++ ++ + + S+ +A++ K +A + +
Sbjct: 4 LWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKL 63
Query: 158 NGQWLGSRSIRTNWS 172
NG + ++ T S
Sbjct: 64 NGLKIEGYTLVTKVS 78
Score = 50.9 bits (121), Expect = 4e-09
Identities = 11/77 (14%), Positives = 25/77 (32%), Gaps = 3/77 (3%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVAATALA 64
TL++ N S T+ + L I V + + +A+++ A +
Sbjct: 2 CTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVE 61
Query: 65 AMNKRVFLEKEMKVNWA 81
+N + +
Sbjct: 62 KLNGLKIEGYTLVTKVS 78
Score = 44.0 bits (103), Expect = 1e-06
Identities = 13/79 (16%), Positives = 31/79 (39%), Gaps = 6/79 (7%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIV------DIRVFKEKGYAFVKFTTKETATHAI 259
CT++ F + + + + +R + +A++ T+KE A + +
Sbjct: 1 ECTLWMTNFPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCV 60
Query: 260 ESIHNTDINGHTVKCFWGK 278
E ++ I G+T+
Sbjct: 61 EKLNGLKIEGYTLVTKVSN 79
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 57.7 bits (139), Expect = 3e-11
Identities = 14/75 (18%), Positives = 30/75 (40%), Gaps = 1/75 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ + + E + E +GE+ + + G +V F ++ +AE A+ +
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNL-GDHLVGNVYVKFRREEDAEKAVIDL 88
Query: 158 NGQWLGSRSIRTNWS 172
N +W + I S
Sbjct: 89 NNRWFNGQPIHAELS 103
Score = 49.6 bits (118), Expect = 2e-08
Identities = 15/71 (21%), Positives = 30/71 (42%), Gaps = 5/71 (7%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVF-----KEKGYAFVKFTTKETATHAIESIH 263
V + EE+ +++ +G + ++ V G +VKF +E A A+ ++
Sbjct: 30 VEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLN 89
Query: 264 NTDINGHTVKC 274
N NG +
Sbjct: 90 NRWFNGQPIHA 100
Score = 48.5 bits (115), Expect = 5e-08
Identities = 14/79 (17%), Positives = 29/79 (36%), Gaps = 4/79 (5%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAATALAA 65
+ + + EE+ + + G V+ V G+ +++F A A+
Sbjct: 28 SDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVID 87
Query: 66 MNKRVFLEKEMKVNWASSP 84
+N R F + + SP
Sbjct: 88 LNNRWFNGQPIHAEL--SP 104
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 56.7 bits (136), Expect = 6e-11
Identities = 26/90 (28%), Positives = 47/90 (52%), Gaps = 1/90 (1%)
Query: 88 PKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKK 147
P D S +FVG++ E + LK+ F+ G + + R+V D +T K KGY F + +
Sbjct: 2 PAVDRSLR-SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQ 60
Query: 148 AEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
A +A+ +NG+ R++R + + +
Sbjct: 61 ETALSAMRNLNGREFSGRALRVDNAASEKN 90
Score = 52.1 bits (124), Expect = 2e-09
Identities = 19/89 (21%), Positives = 38/89 (42%), Gaps = 3/89 (3%)
Query: 4 ESQPTTLYVGNLDVSVTEELL---CALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAA 60
+ +++VGN+ TEE L + + + Y F E+ A
Sbjct: 5 DRSLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETAL 64
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQPK 89
+A+ +N R F + ++V+ A+S N+ +
Sbjct: 65 SAMRNLNGREFSGRALRVDNAASEKNKEE 93
Score = 40.9 bits (95), Expect = 2e-05
Identities = 19/81 (23%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 208 TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFK------EKGYAFVKFTTKETATHAIES 261
+V+ G + EE + +FS G +V R+ KGY F ++ +ETA A+ +
Sbjct: 10 SVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRN 69
Query: 262 IHNTDINGHTVKCFWGKESEN 282
++ + +G ++ +N
Sbjct: 70 LNGREFSGRALRVDNAASEKN 90
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 55.9 bits (134), Expect = 1e-10
Identities = 15/87 (17%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 195 FDEVYNQSSPTNCT-VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKE 253
+ + S T V GG G ++ + V G + + + K Y+F ++ T E
Sbjct: 8 HEGIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKPYSFARYRTTE 67
Query: 254 TATHAIESIHNTDI---NGHTVKCFWG 277
+ A +++ ++ G + +
Sbjct: 68 ESKRAYVTLNGKEVVDDLGQKITLYLN 94
Score = 49.7 bits (118), Expect = 2e-08
Identities = 11/78 (14%), Positives = 25/78 (32%), Gaps = 6/78 (7%)
Query: 85 GNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSF 144
G + + + G L + L G + + + Y+F +
Sbjct: 10 GIETVSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPNKP------YSFARY 63
Query: 145 VKKAEAENAITAMNGQWL 162
E++ A +NG+ +
Sbjct: 64 RTTEESKRAYVTLNGKEV 81
Score = 45.1 bits (106), Expect = 7e-07
Identities = 17/83 (20%), Positives = 29/83 (34%), Gaps = 7/83 (8%)
Query: 5 SQPTT---LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAAT 61
S T + G L V+ L + + G + P N PY+F + +
Sbjct: 15 SYATQSLVVANGGLGNGVSRNQLLPVLEKCGL---VDALLMPPNKPYSFARYRTTEESKR 71
Query: 62 ALAAMN-KRVFLEKEMKVNWASS 83
A +N K V + K+ +
Sbjct: 72 AYVTLNGKEVVDDLGQKITLYLN 94
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing factor
PRP24 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 86
Score = 55.5 bits (133), Expect = 1e-10
Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 92 TSNHYHIFVGDLSPE-IETQTLKEAFAPFGEISNCRIVRD-PQTLKSKGYAFVSFVKKAE 149
T I + +LS E ++ L+E+F FG I I + + AF+ F K
Sbjct: 1 TLEGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDS 60
Query: 150 AENAITAMNGQWLGSRSIRTNWSTRKP 176
AE A+ MN LG+R I + + +KP
Sbjct: 61 AERAL-QMNRSLLGNREISVSLADKKP 86
Score = 45.9 bits (108), Expect = 3e-07
Identities = 18/81 (22%), Positives = 32/81 (39%), Gaps = 6/81 (7%)
Query: 6 QPTTLYVGNLDVSVT-EELLCALFSQIGPVKGCKVIREPGND----PYAFLEFVHHTVAA 60
+ + + NL + E LL F G ++ + AF+ F + A
Sbjct: 3 EGREIMIRNLSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAE 62
Query: 61 TALAAMNKRVFLEKEMKVNWA 81
AL MN+ + +E+ V+ A
Sbjct: 63 RAL-QMNRSLLGNREISVSLA 82
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 55.0 bits (132), Expect = 1e-10
Identities = 21/76 (27%), Positives = 31/76 (40%), Gaps = 5/76 (6%)
Query: 6 QPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAA 65
+ TLYV D+ T LL FS G + + AF+ + A A+A
Sbjct: 4 KGNTLYVYGEDM--TPTLLRGAFSPFGNIIDLSMDPPRN---CAFVTYEKMESADQAVAE 58
Query: 66 MNKRVFLEKEMKVNWA 81
+N ++KVN A
Sbjct: 59 LNGTQVESVQLKVNIA 74
Score = 54.3 bits (130), Expect = 3e-10
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNT 265
T+Y G D+ L+ FSPFG I+D+ + + AFV + E+A A+ ++ T
Sbjct: 5 GNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDPPRNCAFVTYEKMESADQAVAELNGT 62
Query: 266 DINGHTVKCFWGKE 279
+ +K ++
Sbjct: 63 QVESVQLKVNIARK 76
Score = 53.9 bits (129), Expect = 3e-10
Identities = 19/79 (24%), Positives = 37/79 (46%), Gaps = 8/79 (10%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++V + L+ AF+PFG I + + AFV++ K A+ A+ +
Sbjct: 8 LYVYGED--MTPTLLRGAFSPFGNIIDLSMDPPR------NCAFVTYEKMESADQAVAEL 59
Query: 158 NGQWLGSRSIRTNWSTRKP 176
NG + S ++ N + ++P
Sbjct: 60 NGTQVESVQLKVNIARKQP 78
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 55.0 bits (132), Expect = 2e-10
Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 4/89 (4%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALA 64
S + ++VG +TE+ L FSQ G V + + +AF+ F +A +
Sbjct: 3 SGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRA--FAFVTFADDQIAQSLC- 59
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTS 93
+ + ++ A N +S
Sbjct: 60 -GEDLIIKGISVHISNAEPKHNSNSGPSS 87
Score = 53.1 bits (127), Expect = 8e-10
Identities = 18/84 (21%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIR-VFKEKGYAFVKFTTKETATHAIES 261
S + V+ G D+ E+ + + FS +G ++D+ + +AFV F + A
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSLCG- 60
Query: 262 IHNTDINGHTVKCFWGKESENNST 285
+ I G +V + N+++
Sbjct: 61 -EDLIIKGISVHISNAEPKHNSNS 83
Score = 52.3 bits (125), Expect = 1e-09
Identities = 16/85 (18%), Positives = 37/85 (43%), Gaps = 7/85 (8%)
Query: 92 TSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAE 151
+S +FVG + ++ L+E F+ +G++ + I + + +AFV+F A+
Sbjct: 2 SSGSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFR-----AFAFVTFADDQIAQ 56
Query: 152 NAITAMNGQWLGSRSIRTNWSTRKP 176
+ + S+ + + K
Sbjct: 57 SLC--GEDLIIKGISVHISNAEPKH 79
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 55.4 bits (133), Expect = 2e-10
Identities = 13/76 (17%), Positives = 31/76 (40%), Gaps = 2/76 (2%)
Query: 100 VGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTL--KSKGYAFVSFVKKAEAENAITAM 157
+ D E + +++ + +G + + I R + G FV F + + A+ +
Sbjct: 19 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 78
Query: 158 NGQWLGSRSIRTNWST 173
G+ +R + T +
Sbjct: 79 TGRKFANRVVVTKYCD 94
Score = 38.4 bits (89), Expect = 1e-04
Identities = 12/63 (19%), Positives = 21/63 (33%), Gaps = 8/63 (12%)
Query: 220 EELVSKVFSPFGTIVDIRVFKE--------KGYAFVKFTTKETATHAIESIHNTDINGHT 271
E V S +G + I + + G FV+FT+ A++ +
Sbjct: 28 VEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRV 87
Query: 272 VKC 274
V
Sbjct: 88 VVT 90
Score = 34.6 bits (79), Expect = 0.004
Identities = 12/76 (15%), Positives = 25/76 (32%), Gaps = 5/76 (6%)
Query: 12 VGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-----YAFLEFVHHTVAATALAAM 66
+ + + E + S+ G VK ++ R F+EF A+ +
Sbjct: 19 LDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGL 78
Query: 67 NKRVFLEKEMKVNWAS 82
R F + + +
Sbjct: 79 TGRKFANRVVVTKYCD 94
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 54.8 bits (131), Expect = 2e-10
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
Query: 98 IFVGDLSPEI---ETQTLKEAFAPFGEISNCRIVRDPQTLKS---KGYAFVSFVKKAEAE 151
+FV LS + E E F FG+I I S A+V++++ +A
Sbjct: 11 VFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDAL 70
Query: 152 NAITAMNGQWLGSRSIR 168
AI +N + R+++
Sbjct: 71 RAIQCVNNVVVDGRTLK 87
Score = 46.0 bits (108), Expect = 3e-07
Identities = 10/82 (12%), Positives = 26/82 (31%), Gaps = 9/82 (10%)
Query: 6 QPTTLYVGNLDVSVTEELLCALF---SQIGPVKGCKVIREPGNDP------YAFLEFVHH 56
Q ++V L + + + + G + + A++ ++
Sbjct: 7 QKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRS 66
Query: 57 TVAATALAAMNKRVFLEKEMKV 78
A A+ +N V + +K
Sbjct: 67 EDALRAIQCVNNVVVDGRTLKA 88
Score = 42.5 bits (99), Expect = 4e-06
Identities = 18/79 (22%), Positives = 31/79 (39%), Gaps = 12/79 (15%)
Query: 208 TVYCGGFGKDLNEELVSKVF---SPFGTIVDIRVFKEK---------GYAFVKFTTKETA 255
V+ G + L + V K FG I + + A+V + E A
Sbjct: 10 LVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDA 69
Query: 256 THAIESIHNTDINGHTVKC 274
AI+ ++N ++G T+K
Sbjct: 70 LRAIQCVNNVVVDGRTLKA 88
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 54.8 bits (131), Expect = 2e-10
Identities = 25/95 (26%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 90 QDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAE 149
D + +F+ +LS + E + L E FG++ R+V P T SKG AF F+ +
Sbjct: 3 SDVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEA 62
Query: 150 AENAITAMN------GQWLGSRSIRTNWSTRKPPA 178
A+ + A + G L R ++ + + + A
Sbjct: 63 AQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
Score = 50.6 bits (120), Expect = 7e-09
Identities = 22/100 (22%), Positives = 42/100 (42%), Gaps = 14/100 (14%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPG---NDPYAFLEFVHHTVA 59
D ++ T+++ NL EE L + Q G +K +V+ P + AF +F+ A
Sbjct: 4 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAA 63
Query: 60 ATALAAMNKRVFLE------KEMKVNWASSPGNQPKQDTS 93
LAA + +++KV+ A + + +
Sbjct: 64 QKCLAAASLEAEGGGLKLDGRQLKVDLA-----VTRDEAA 98
Score = 35.6 bits (81), Expect = 0.002
Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 12/91 (13%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTKETATHAI 259
TV+ D EE + +V FG + +RV G AF +F T+E A +
Sbjct: 8 GKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCL 67
Query: 260 ESIH------NTDINGHTVKCFWGKESENNS 284
+ ++G +K + +
Sbjct: 68 AAASLEAEGGGLKLDGRQLKVDLAVTRDEAA 98
>d1l3ka2 d.58.7.1 (A:103-181) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 54.3 bits (130), Expect = 2e-10
Identities = 18/73 (24%), Positives = 34/73 (46%), Gaps = 1/73 (1%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
IFVG + + E L++ F +G+I I+ D + K +G+AFV+F ++ + I
Sbjct: 5 IFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTF-DDHDSVDKIVIQ 63
Query: 158 NGQWLGSRSIRTN 170
+ +
Sbjct: 64 KYHTVNGHNCEVR 76
Score = 41.2 bits (96), Expect = 1e-05
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 9 TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHT--VAATALAAM 66
++VG + E L F Q G ++ +++ + G+ FV + +
Sbjct: 4 KIFVGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ 63
Query: 67 NKRVFLEKEMKVNWA 81
+V A
Sbjct: 64 KYHTVNGHNCEVRKA 78
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 54.8 bits (131), Expect = 2e-10
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+++ +LSP + + L FA F E I T + +G AF++F K A A+ +
Sbjct: 21 LYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLV 80
Query: 158 NGQWLGSRSIRTNWSTRK 175
NG L + + + K
Sbjct: 81 NGYKLYGKILVIEFGKNK 98
Score = 50.6 bits (120), Expect = 1e-08
Identities = 22/89 (24%), Positives = 36/89 (40%), Gaps = 8/89 (8%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALA 64
LY+ NL VTE L +LF++ KG + AF+ F + +A AL
Sbjct: 19 KVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALH 78
Query: 65 AMNKRVFLEKEMKVNWASSPGNQPKQDTS 93
+N K + + + + K+ S
Sbjct: 79 LVNGYKLYGKILVIEFG-----KNKKQRS 102
Score = 42.9 bits (100), Expect = 5e-06
Identities = 20/92 (21%), Positives = 34/92 (36%), Gaps = 7/92 (7%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEK------GYAFVKFTTK 252
YN P N +Y + E + +F+ F + G AF+ F K
Sbjct: 12 YNPGEP-NKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNK 70
Query: 253 ETATHAIESIHNTDINGHTVKCFWGKESENNS 284
E A A+ ++ + G + +GK + S
Sbjct: 71 EIAWQALHLVNGYKLYGKILVIEFGKNKKQRS 102
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 53.4 bits (128), Expect = 8e-10
Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 5/74 (6%)
Query: 102 DLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAMNGQW 161
+ EI + L+ + FG+I + G A VSF EA+ I ++G+W
Sbjct: 27 LVLNEIR-EDLRVECSKFGQIRKLLLFDR----HPDGVASVSFRDPEEADYCIQTLDGRW 81
Query: 162 LGSRSIRTNWSTRK 175
G R I
Sbjct: 82 FGGRQITAQAWDGT 95
Score = 47.2 bits (112), Expect = 1e-07
Identities = 14/57 (24%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
Query: 220 EELVSKVFSPFGTIVDIRVF--KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKC 274
E + S FG I + +F G A V F E A + I+++ G +
Sbjct: 33 REDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITA 89
Score = 36.8 bits (85), Expect = 5e-04
Identities = 12/75 (16%), Positives = 25/75 (33%), Gaps = 1/75 (1%)
Query: 7 PTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM 66
P L ++ E L S+ G ++ + D A + F A + +
Sbjct: 19 PMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFD-RHPDGVASVSFRDPEEADYCIQTL 77
Query: 67 NKRVFLEKEMKVNWA 81
+ R F +++
Sbjct: 78 DGRWFGGRQITAQAW 92
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 54.1 bits (129), Expect = 1e-09
Identities = 23/106 (21%), Positives = 49/106 (46%)
Query: 72 LEKEMKVNWASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDP 131
L++ + P Q + ++ V + ++ L++ F +G I + +IV D
Sbjct: 19 LQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDR 78
Query: 132 QTLKSKGYAFVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
+T +S+GY FV F + A+ AI +NG + ++ ++ +
Sbjct: 79 ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124
Score = 52.6 bits (125), Expect = 4e-09
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 3/89 (3%)
Query: 3 DESQPTTLYVGNLDVSVTEELL---CALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVA 59
+ L V + +V E L + I VK + Y F++F + A
Sbjct: 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSA 97
Query: 60 ATALAAMNKRVFLEKEMKVNWASSPGNQP 88
A+A +N L K +KV A+S +P
Sbjct: 98 QQAIAGLNGFNILNKRLKVALAASGHQRP 126
Score = 36.8 bits (84), Expect = 0.001
Identities = 16/112 (14%), Positives = 38/112 (33%), Gaps = 6/112 (5%)
Query: 176 PPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVD 235
P T + ++ + N + ++E + ++F +G I
Sbjct: 12 PYGQTAQLQQLQQQQQQHIPPTQMNPEPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIES 71
Query: 236 IRVFKEKGY------AFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281
+++ ++ FVKF + +A AI ++ +I +K
Sbjct: 72 VKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGH 123
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 52.1 bits (124), Expect = 1e-09
Identities = 20/71 (28%), Positives = 37/71 (52%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+++ L P Q L + P+G+I + + + D T K KGY FV F + A+ A+TA+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 158 NGQWLGSRSIR 168
+ ++ +
Sbjct: 61 KASGVQAQMAK 71
Score = 38.6 bits (89), Expect = 6e-05
Identities = 16/71 (22%), Positives = 27/71 (38%), Gaps = 3/71 (4%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGN---DPYAFLEFVHHTVAATALAAM 66
LY+ L T++ L L G + K I + Y F++F + A A+ A+
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 67 NKRVFLEKEMK 77
+ K
Sbjct: 61 KASGVQAQMAK 71
Score = 36.3 bits (83), Expect = 4e-04
Identities = 15/71 (21%), Positives = 29/71 (40%), Gaps = 6/71 (8%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKG------YAFVKFTTKETATHAIESI 262
+Y G ++ + K+ P+G IV + +K Y FV F + A A+ ++
Sbjct: 1 LYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTAL 60
Query: 263 HNTDINGHTVK 273
+ + K
Sbjct: 61 KASGVQAQMAK 71
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 52.8 bits (126), Expect = 2e-09
Identities = 18/85 (21%), Positives = 35/85 (41%), Gaps = 3/85 (3%)
Query: 8 TTLYVGNLDV-SVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM 66
+ L V NL+ VT + L LF G V+ K++ A ++ A A++ +
Sbjct: 3 SVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFN--KKENALVQMADGNQAQLAMSHL 60
Query: 67 NKRVFLEKEMKVNWASSPGNQPKQD 91
N K +++ + Q ++
Sbjct: 61 NGHKLHGKPIRITLSKHQNVQLPRE 85
Score = 47.4 bits (112), Expect = 1e-07
Identities = 22/95 (23%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 98 IFVGDLSPE-IETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITA 156
+ V +L+PE + Q+L F +G++ +I+ + + A V +A+ A++
Sbjct: 5 LLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKE-----NALVQMADGNQAQLAMSH 59
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTK 191
+NG L + IR S + + E + TK
Sbjct: 60 LNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTK 94
Score = 37.8 bits (87), Expect = 3e-04
Identities = 10/75 (13%), Positives = 29/75 (38%), Gaps = 2/75 (2%)
Query: 206 NCTVYCGGFG-KDLNEELVSKVFSPFGTIVDIRVFKEKG-YAFVKFTTKETATHAIESIH 263
N + + + + + +F +G + +++ K A V+ A A+ ++
Sbjct: 2 NSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLN 61
Query: 264 NTDINGHTVKCFWGK 278
++G ++ K
Sbjct: 62 GHKLHGKPIRITLSK 76
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 52.1 bits (124), Expect = 2e-09
Identities = 21/98 (21%), Positives = 34/98 (34%), Gaps = 10/98 (10%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
+ S G+ K S + V L + L EA FG I ++ + A
Sbjct: 3 SGSSGSHHKVSVSPV--VHVRGLCESVVEADLVEALEKFGTICYVMMMPFKR------QA 54
Query: 141 FVSFVKKAEAENAITAMNGQ--WLGSRSIRTNWSTRKP 176
V F A+ +T ++ + N+ST K
Sbjct: 55 LVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92
Score = 45.9 bits (108), Expect = 3e-07
Identities = 13/78 (16%), Positives = 27/78 (34%), Gaps = 5/78 (6%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAM- 66
++V L SV E L + G + ++ A +EF + A +
Sbjct: 16 PVVHVRGLCESVVEADLVEALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAA 72
Query: 67 -NKRVFLEKEMKVNWASS 83
++ N+++S
Sbjct: 73 DVPVYIAGQQAFFNYSTS 90
Score = 45.2 bits (106), Expect = 7e-07
Identities = 17/102 (16%), Positives = 34/102 (33%), Gaps = 9/102 (8%)
Query: 200 NQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAI 259
+ + V+ G + + E + + FGTI + + K A V+F ++A +
Sbjct: 9 HHKVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPFKRQALVEFENIDSAKECV 68
Query: 260 ESIHNTD--INGHTVKCFWGKESENNSTLAQPSAPTTPQPNS 299
+ I G + + P P+S
Sbjct: 69 TFAADVPVYIAGQQAFFNYSTSKR-------ITRPGNSGPSS 103
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 51.3 bits (122), Expect = 3e-09
Identities = 14/79 (17%), Positives = 27/79 (34%), Gaps = 4/79 (5%)
Query: 5 SQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALA 64
S + + V NL + + L K N AF+ ++ A A+
Sbjct: 3 SGSSGILVKNLPQDSNCQEVHDLLKDY----DLKYCYVDRNKRTAFVTLLNGEQAQNAIQ 58
Query: 65 AMNKRVFLEKEMKVNWASS 83
++ F K++ V +
Sbjct: 59 MFHQYSFRGKDLIVQLQPT 77
Score = 46.3 bits (109), Expect = 2e-07
Identities = 13/86 (15%), Positives = 27/86 (31%), Gaps = 7/86 (8%)
Query: 93 SNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAEN 152
S I V +L + Q + + + ++K AFV+ + +A+N
Sbjct: 3 SGSSGILVKNLPQDSNCQEVHDLLKDYDLKYCYVD-------RNKRTAFVTLLNGEQAQN 55
Query: 153 AITAMNGQWLGSRSIRTNWSTRKPPA 178
AI + + +
Sbjct: 56 AIQMFHQYSFRGKDLIVQLQPTDALL 81
Score = 45.5 bits (107), Expect = 4e-07
Identities = 19/97 (19%), Positives = 31/97 (31%), Gaps = 11/97 (11%)
Query: 203 SPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESI 262
S + + +D N + V + + + V + K AFV E A +AI+
Sbjct: 2 SSGSSGILVKNLPQDSNCQEVHDLLKDYD-LKYCYVDRNKRTAFVTLLNGEQAQNAIQMF 60
Query: 263 HNTDINGHTVKCFWGKESENNSTLAQPSAPTTPQPNS 299
H G + L A P+S
Sbjct: 61 HQYSFRGKDLIV----------QLQPTDALLCSGPSS 87
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 51.0 bits (121), Expect = 6e-09
Identities = 14/94 (14%), Positives = 29/94 (30%), Gaps = 3/94 (3%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ ++ I + + N V + G A V F + +A + +
Sbjct: 11 AHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSE-RL 69
Query: 158 NGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTK 191
+ + L R + T + M K + K
Sbjct: 70 HRKKLNGREAFVHVVTLED--MREIEKNPPAQGK 101
Score = 40.6 bits (94), Expect = 3e-05
Identities = 11/90 (12%), Positives = 32/90 (35%), Gaps = 4/90 (4%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP---YAFLEFVHHTVAA 60
S ++ N+ S+T+ + I + + N A ++F + A
Sbjct: 5 NSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDAR 64
Query: 61 TALAAMNKRVFLEKEMKVNWASSPGNQPKQ 90
+ ++++ +E V+ + + +
Sbjct: 65 KSE-RLHRKKLNGREAFVHVVTLEDMREIE 93
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 50.4 bits (120), Expect = 8e-09
Identities = 19/83 (22%), Positives = 37/83 (44%), Gaps = 6/83 (7%)
Query: 4 ESQPT-TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATA 62
++ PT L+VG L + + L F + G + I D +A++++ A A
Sbjct: 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGS---IRTIDHVKGDSFAYIQYESLDAAQAA 69
Query: 63 LAAMNKRVF--LEKEMKVNWASS 83
A M ++ ++V++A S
Sbjct: 70 CAKMRGFPLGGPDRRLRVDFAKS 92
Score = 50.1 bits (119), Expect = 1e-08
Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 8/83 (9%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
++VG L P L F FG I V+ +A++ + A+ A M
Sbjct: 20 LWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDS------FAYIQYESLDAAQAACAKM 73
Query: 158 NGQWLG--SRSIRTNWSTRKPPA 178
G LG R +R +++ P +
Sbjct: 74 RGFPLGGPDRRLRVDFAKSGPSS 96
Score = 47.0 bits (111), Expect = 2e-07
Identities = 16/75 (21%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 199 YNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHA 258
Y +++PT ++ GG G + + +++ F FG+I I K +A++++ + + A A
Sbjct: 11 YGKANPTT-RLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKGDSFAYIQYESLDAAQAA 69
Query: 259 IESIHNTDINGHTVK 273
+ + G +
Sbjct: 70 CAKMRGFPLGGPDRR 84
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 50.2 bits (119), Expect = 1e-08
Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 2/81 (2%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTV--AA 60
E PT LY+ NL +S+ E+ L + G V +++R+ +
Sbjct: 14 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCE 73
Query: 61 TALAAMNKRVFLEKEMKVNWA 81
+ N +
Sbjct: 74 AVIGHFNGKFIKTPPGVSAPT 94
Score = 46.3 bits (109), Expect = 2e-07
Identities = 19/87 (21%), Positives = 40/87 (45%), Gaps = 1/87 (1%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
KQ + ++++ +L ++ Q L+ PFG++ + RI+RD S+G F
Sbjct: 9 QMAKQQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSG-TSRGVGFARME 67
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWS 172
+ E I NG+++ + + +
Sbjct: 68 STEKCEAVIGHFNGKFIKTPPGVSAPT 94
Score = 30.5 bits (68), Expect = 0.096
Identities = 12/83 (14%), Positives = 26/83 (31%), Gaps = 5/83 (6%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVF-----KEKGYAFVKFTTKETA 255
Q +Y ++E+ + + PFG ++ R+ +G F + + E
Sbjct: 13 QQEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKC 72
Query: 256 THAIESIHNTDINGHTVKCFWGK 278
I + I +
Sbjct: 73 EAVIGHFNGKFIKTPPGVSAPTE 95
>d2adca2 d.58.7.1 (A:444-531) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 48.6 bits (115), Expect = 3e-08
Identities = 20/78 (25%), Positives = 35/78 (44%), Gaps = 2/78 (2%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
TL++ N+ SV+EE L LFS G V + + A ++ A AL ++
Sbjct: 11 ATLHLSNIPPSVSEEDLKVLFSSNGGVVKGFKFFQK-DRKMALIQMGSVEEAVQALIDLH 69
Query: 68 KRVFLE-KEMKVNWASSP 84
E ++V+++ S
Sbjct: 70 NHDLGENHHLRVSFSKST 87
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 48.4 bits (114), Expect = 3e-08
Identities = 11/82 (13%), Positives = 25/82 (30%), Gaps = 1/82 (1%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTV-AAT 61
+ + P L++GNL+ + + L S++ V+ F +
Sbjct: 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLE 68
Query: 62 ALAAMNKRVFLEKEMKVNWASS 83
+ E+K+
Sbjct: 69 KALELTGLKVFGNEIKLEKPKG 90
Score = 47.3 bits (111), Expect = 9e-08
Identities = 15/85 (17%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 91 DTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEA 150
+++ +++F+G+L+P LK A + ++ +V T ++ + +V F +
Sbjct: 9 ESTTPFNLFIGNLNPNKSVAELKVAISELFAKNDLAVVDVR-TGTNRKFGYVDFESAEDL 67
Query: 151 ENAITAMNGQWLGSRSIRTNWSTRK 175
E A+ + G + I+ +
Sbjct: 68 EKALE-LTGLKVFGNEIKLEKPKGR 91
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 48.6 bits (115), Expect = 3e-08
Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 7/97 (7%)
Query: 81 ASSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYA 140
SS + + + + V L P Q LK+ G++ + +D
Sbjct: 1 GSSGSSGGPPTRRSDFRVLVSGLPPSGSWQDLKDHMREAGDVCYADVQKDG-------MG 53
Query: 141 FVSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPP 177
V +++K + E A+ ++ S T++ P
Sbjct: 54 MVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPE 90
Score = 43.6 bits (102), Expect = 2e-06
Identities = 12/90 (13%), Positives = 27/90 (30%), Gaps = 4/90 (4%)
Query: 4 ESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATAL 63
+ V L S + + L + G + D +E++ AL
Sbjct: 12 RRSDFRVLVSGLPPSGSWQDLKDHMREA----GDVCYADVQKDGMGMVEYLRKEDMEYAL 67
Query: 64 AAMNKRVFLEKEMKVNWASSPGNQPKQDTS 93
++ F E + ++ + +S
Sbjct: 68 RKLDDTKFRSHEGETSYIRVYPERSSGPSS 97
Score = 41.3 bits (96), Expect = 1e-05
Identities = 11/84 (13%), Positives = 29/84 (34%), Gaps = 1/84 (1%)
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIES 261
+ ++ V G + + + V ++ G V++ KE +A+
Sbjct: 11 TRRSDFRVLVSGLPPSGSWQDLKDHMREA-GDVCYADVQKDGMGMVEYLRKEDMEYALRK 69
Query: 262 IHNTDINGHTVKCFWGKESENNST 285
+ +T H + + + S+
Sbjct: 70 LDDTKFRSHEGETSYIRVYPERSS 93
>d1weza_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 48.2 bits (114), Expect = 5e-08
Identities = 13/97 (13%), Positives = 32/97 (32%), Gaps = 3/97 (3%)
Query: 82 SSPGNQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAF 141
SS + ++ + + + L + F+P + + + G A
Sbjct: 2 SSGSSGSSFQSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDG--RVTGEAD 59
Query: 142 VSFVKKAEAENAITAMNGQWLGSRSIRTNWSTRKPPA 178
V F +A A+ A + + R + ++ +
Sbjct: 60 VEFATHEDAVAAM-AKDKANMQHRYVELFLNSTAGTS 95
Score = 46.3 bits (109), Expect = 2e-07
Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 2/92 (2%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP-YAFLEFVHHTVAAT 61
+ +++ L TE + FS + P++ I G A +EF H A
Sbjct: 11 QSTTGHCVHMRGLPYRATENDIYNFFSPLNPMRVHIEIGPDGRVTGEADVEFATHEDAVA 70
Query: 62 ALAAMNKRVFLEKEMKVNWASSPGNQPKQDTS 93
A+ A +K + +++ S+ G +S
Sbjct: 71 AM-AKDKANMQHRYVELFLNSTAGTSGSGPSS 101
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 47.4 bits (112), Expect = 8e-08
Identities = 9/81 (11%), Positives = 27/81 (33%), Gaps = 3/81 (3%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDP--YAFLEFVHHTVAA 60
++ + ++Y+ T + + G V ++ R F+ F A
Sbjct: 2 NDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAK 61
Query: 61 TALAAMNKRVFLEKEMKVNWA 81
+ + + E ++ + +
Sbjct: 62 KFV-ETPGQKYKETDLLILFK 81
Score = 41.6 bits (97), Expect = 7e-06
Identities = 16/84 (19%), Positives = 34/84 (40%), Gaps = 6/84 (7%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKE-----KGYAFVKFTTKETA 255
++ N +VY GF D + + + G +++I++ + KG FV F + E+A
Sbjct: 1 KNDVKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESA 60
Query: 256 THAIESIHNTDINGHTVKCFWGKE 279
+E + + +
Sbjct: 61 KKFVE-TPGQKYKETDLLILFKDD 83
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 46.9 bits (111), Expect = 9e-08
Identities = 9/66 (13%), Positives = 23/66 (34%), Gaps = 2/66 (3%)
Query: 206 NCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNT 265
+ V GF + ++ F+ +G I+ + + +++ +K A A+
Sbjct: 4 DTWVTVFGFPQASASYIL-LQFAQYGNILKHVMSNTGNWMHIRYQSKLQARKALS-KDGR 61
Query: 266 DINGHT 271
Sbjct: 62 IFGESI 67
Score = 45.3 bits (107), Expect = 4e-07
Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 8/70 (11%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ V + L + FA +G I + + + + K +A A+ +
Sbjct: 7 VTVFGFPQASASYILLQ-FAQYGNILKHVMSNT------GNWMHIRYQSKLQARKAL-SK 58
Query: 158 NGQWLGSRSI 167
+G+ G +
Sbjct: 59 DGRIFGESIM 68
Score = 35.3 bits (81), Expect = 0.001
Identities = 11/69 (15%), Positives = 21/69 (30%), Gaps = 5/69 (7%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
T + V + +L +K + + + A AL + +
Sbjct: 5 TWVTVFGFPQASASYILLQFAQYGNILK----HVMSNTGNWMHIRYQSKLQARKAL-SKD 59
Query: 68 KRVFLEKEM 76
R+F E M
Sbjct: 60 GRIFGESIM 68
>d1owxa_ d.58.7.1 (A:) Lupus LA protein {Human (Homo sapiens)
[TaxId: 9606]}
Length = 113
Score = 47.9 bits (113), Expect = 1e-07
Identities = 19/101 (18%), Positives = 29/101 (28%), Gaps = 5/101 (4%)
Query: 86 NQPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
+ ++ F GDL + + L F+ GEI VR +
Sbjct: 2 HGSLEEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIIL-----FKE 56
Query: 146 KKAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ 186
K EA N L R+ W + K+
Sbjct: 57 KAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEKEALKKI 97
Score = 47.5 bits (112), Expect = 1e-07
Identities = 18/88 (20%), Positives = 27/88 (30%), Gaps = 2/88 (2%)
Query: 3 DESQPTTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATA 62
++ + G+LD E L LFS G +K +R L A
Sbjct: 7 EKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEG--IILFKEKAKEALGK 64
Query: 63 LAAMNKRVFLEKEMKVNWASSPGNQPKQ 90
N + +V W G K+
Sbjct: 65 AKDANNGNLQLRNKEVTWEVLEGEVEKE 92
Score = 43.3 bits (101), Expect = 4e-06
Identities = 13/75 (17%), Positives = 24/75 (32%), Gaps = 2/75 (2%)
Query: 204 PTNC-TVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTK-ETATHAIES 261
C + G E + +FS G I I + + F K + A +
Sbjct: 8 KIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAKEGIILFKEKAKEALGKAKD 67
Query: 262 IHNTDINGHTVKCFW 276
+N ++ + W
Sbjct: 68 ANNGNLQLRNKEVTW 82
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 47.2 bits (111), Expect = 2e-07
Identities = 18/100 (18%), Positives = 44/100 (44%), Gaps = 1/100 (1%)
Query: 87 QPKQDTSNHYHIFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVK 146
+ + + +++ L E E + + + F + + + K+ G FV F
Sbjct: 10 RSRSPHEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRN 69
Query: 147 KAEAENAITAMNGQWLGSRSIRTNWSTRKPPAMTNERKRQ 186
+A+ + A+ + Q++G+R I+ + T+K + R+
Sbjct: 70 EADYKAAL-CRHKQYMGNRFIQVHPITKKGMLEKIDMIRK 108
Score = 28.7 bits (63), Expect = 0.45
Identities = 14/102 (13%), Positives = 27/102 (26%), Gaps = 8/102 (7%)
Query: 181 NERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKV-FSPFGTIVDIRVF 239
+ +KR S + VY + P + + I
Sbjct: 4 SGQKRSRSRSPHEAGFCVYLKGLPFEAENK------HVIDFFKKLDIVEDSIYIAYGPNG 57
Query: 240 KEKGYAFVKFTTKETATHAIESIHNTDINGHTVKCFWGKESE 281
K G FV+F + A+ H + ++ +
Sbjct: 58 KATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKG 98
>d2ghpa2 d.58.7.1 (A:41-115) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 75
Score = 45.6 bits (107), Expect = 3e-07
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 2/76 (2%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGND-PYAFLEFVHHTVAATALAAM 66
TT+ V NL S + + F GP+ V + +A +EF + A A+
Sbjct: 1 TTVLVKNLPKSYNQNKVYKYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAITKT 60
Query: 67 NKRVFLEKEMKVNWAS 82
+K V + E+ V+ +
Sbjct: 61 HK-VVGQNEIIVSHLT 75
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 44.9 bits (105), Expect = 1e-06
Identities = 19/90 (21%), Positives = 30/90 (33%), Gaps = 5/90 (5%)
Query: 8 TTLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMN 67
T + NL + FS+ G + P A +EF+ A A +
Sbjct: 11 TVILAKNLPAGTLAAEIQETFSRFGS---LGRVLLPEGGITAIVEFLEPLEARKAFRHLA 67
Query: 68 KRVFLEKEMKVNWA--SSPGNQPKQDTSNH 95
F + + WA G P++ S H
Sbjct: 68 YSKFHHVPLYLEWAPIGVFGAAPQKKDSQH 97
Score = 44.6 bits (104), Expect = 1e-06
Identities = 16/105 (15%), Positives = 34/105 (32%), Gaps = 7/105 (6%)
Query: 202 SSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIES 261
S + + + + FS FG++ + + + A V+F A A
Sbjct: 6 SGRSKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEGGITAIVEFLEPLEARKAFRH 65
Query: 262 IHNTDINGHTVKCFWGKE-------SENNSTLAQPSAPTTPQPNS 299
+ + + + W + +S QP+ P+S
Sbjct: 66 LAYSKFHHVPLYLEWAPIGVFGAAPQKKDSQHEQPAEKAESGPSS 110
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 43.5 bits (102), Expect = 2e-06
Identities = 16/93 (17%), Positives = 33/93 (35%), Gaps = 11/93 (11%)
Query: 87 QPKQDTSNHYHIFVGDLSPEIETQT-LKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFV 145
+ + +T + + D + L + PFG ISN I+ AF+
Sbjct: 2 KGRVETRRV--VHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKIN------EAFIEMA 53
Query: 146 KKAEAENAITA--MNGQWLGSRSIRTNWSTRKP 176
+A+ A+ + + +R + S +
Sbjct: 54 TTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYK 86
Score = 43.5 bits (102), Expect = 2e-06
Identities = 10/79 (12%), Positives = 21/79 (26%), Gaps = 6/79 (7%)
Query: 9 TLYVGNLDVS-VTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAA-- 65
+++ + L L G AF+E A A+
Sbjct: 10 VVHIMDFQRGKNLRYQLLQLVEPFGV---ISNHLILNKINEAFIEMATTEDAQAAVDYYT 66
Query: 66 MNKRVFLEKEMKVNWASSP 84
+ K ++V+ +
Sbjct: 67 TTPALVFGKPVRVHLSQKY 85
Score = 42.8 bits (100), Expect = 4e-06
Identities = 18/76 (23%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
Query: 208 TVYCGGF--GKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESI--H 263
V+ F GK+L +L+ ++ PFG I + + + AF++ T E A A++
Sbjct: 10 VVHIMDFQRGKNLRYQLL-QLVEPFGVISNHLILNKINEAFIEMATTEDAQAAVDYYTTT 68
Query: 264 NTDINGHTVKCFWGKE 279
+ G V+ ++
Sbjct: 69 PALVFGKPVRVHLSQK 84
>d3begb1 d.58.7.1 (B:121-207) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 40.3 bits (93), Expect = 3e-05
Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 8/92 (8%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ V L P Q LK+ G++ + RD V FV+K + A+ +
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREAGDVCYADVYRDG-------TGVVEFVRKEDMTYAVRKL 55
Query: 158 NGQWLGSRSIRTNWSTRKPPAM-TNERKRQNS 188
+ S T + K + R S
Sbjct: 56 DNTKFRSHEGETAYIRVKVDGPRSPSYGRSRS 87
Score = 39.1 bits (90), Expect = 7e-05
Identities = 13/82 (15%), Positives = 26/82 (31%), Gaps = 4/82 (4%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKR 69
+ V L S + + L + G + D +EFV A+ ++
Sbjct: 3 VVVSGLPPSGSWQDLKDHMREA----GDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNT 58
Query: 70 VFLEKEMKVNWASSPGNQPKQD 91
F E + + + P+
Sbjct: 59 KFRSHEGETAYIRVKVDGPRSP 80
Score = 31.8 bits (71), Expect = 0.030
Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 1/76 (1%)
Query: 209 VYCGGFGKDLNEELVSKVFSPFGTIVDIRVFKEKGYAFVKFTTKETATHAIESIHNTDIN 268
V G + + + V G V+F KE T+A+ + NT
Sbjct: 3 VVVSGLPPSGSWQDLKD-HMREAGDVCYADVYRDGTGVVEFVRKEDMTYAVRKLDNTKFR 61
Query: 269 GHTVKCFWGKESENNS 284
H + + + +
Sbjct: 62 SHEGETAYIRVKVDGP 77
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 39.5 bits (91), Expect = 4e-05
Identities = 21/81 (25%), Positives = 30/81 (37%), Gaps = 4/81 (4%)
Query: 3 DESQPT-TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAAT 61
E P L++ NL E +L LF+Q K P AF+EF +
Sbjct: 3 TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEV--RLVPNRHDIAFVEFTTELQSNA 60
Query: 62 ALAAMNKRVFLE-KEMKVNWA 81
A A+ MK+ +A
Sbjct: 61 AKEALQGFKITPTHAMKITFA 81
Score = 37.5 bits (86), Expect = 2e-04
Identities = 20/81 (24%), Positives = 36/81 (44%), Gaps = 2/81 (2%)
Query: 201 QSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTIV-DIRVFKEKGYAFVKFTTKETATHAI 259
P N ++ ++ NE ++S +F+ F V AFV+FTT+ + A
Sbjct: 3 TEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAK 62
Query: 260 ESIHNTDI-NGHTVKCFWGKE 279
E++ I H +K + K+
Sbjct: 63 EALQGFKITPTHAMKITFAKK 83
Score = 36.8 bits (84), Expect = 4e-04
Identities = 15/78 (19%), Positives = 32/78 (41%), Gaps = 6/78 (7%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+F+ +L E L F F R+V + AFV F + ++ A A+
Sbjct: 11 LFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHD-----IAFVEFTTELQSNAAKEAL 65
Query: 158 NGQWL-GSRSIRTNWSTR 174
G + + +++ ++ +
Sbjct: 66 QGFKITPTHAMKITFAKK 83
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein 2,
PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.1 bits (90), Expect = 8e-05
Identities = 13/80 (16%), Positives = 29/80 (36%), Gaps = 8/80 (10%)
Query: 98 IFVGDLSPEIETQTLKEAFAPFGEISNCRIVRDPQTLKSKGYAFVSFVKKAEAENAITAM 157
+ + L E+ + PFG+++N +++ AF+ + A +
Sbjct: 11 LHIRKLPGEVTETEVIALGLPFGKVTNILMLKGKN------QAFLELATEEAAITMVNYY 64
Query: 158 --NGQWLGSRSIRTNWSTRK 175
L ++ I +S K
Sbjct: 65 SAVTPHLRNQPIYIQYSNHK 84
Score = 37.9 bits (87), Expect = 2e-04
Identities = 16/83 (19%), Positives = 28/83 (33%), Gaps = 6/83 (7%)
Query: 4 ESQPT-TLYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATA 62
+ P+ L++ L VTE + AL G I AFLE A T
Sbjct: 4 DGAPSRVLHIRKLPGEVTETEVIALGLPFGK---VTNILMLKGKNQAFLELATEEAAITM 60
Query: 63 LAAM--NKRVFLEKEMKVNWASS 83
+ + + + +++
Sbjct: 61 VNYYSAVTPHLRNQPIYIQYSNH 83
>d1wi6a1 d.58.7.1 (A:69-143) Ribonucleoprotein PTB-binding 1,
Raver-1 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 75
Score = 36.8 bits (84), Expect = 3e-04
Identities = 13/74 (17%), Positives = 26/74 (35%), Gaps = 4/74 (5%)
Query: 10 LYVGNLDVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAATALAAMNKR 69
+ + L VT + + L S K AF+ ++ A A+ ++
Sbjct: 1 ILIRGLPGDVTNQEVHDLLSDY----ELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQS 56
Query: 70 VFLEKEMKVNWASS 83
E+E+ V +
Sbjct: 57 RLRERELSVQLQPT 70
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 31.1 bits (69), Expect = 0.061
Identities = 11/80 (13%), Positives = 26/80 (32%), Gaps = 2/80 (2%)
Query: 3 DESQPTTLYVGNL-DVSVTEELLCALFSQIGPVKGCKVIREPGNDPYAFLEFVHHTVAAT 61
+ +++ NL ++ + L G +K ++R E +A
Sbjct: 14 KQELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRMKSQAFIEM-ETREDAMAMV 72
Query: 62 ALAAMNKRVFLEKEMKVNWA 81
F + +KV+ +
Sbjct: 73 DHCLKKALWFQGRCVKVDLS 92
>d2dgxa1 d.58.7.1 (A:563-635) Limkain-b1, LKAP {Human (Homo
sapiens) [TaxId: 9606]}
Length = 73
Score = 25.1 bits (55), Expect = 3.7
Identities = 16/71 (22%), Positives = 32/71 (45%), Gaps = 4/71 (5%)
Query: 14 NLDVSVTEELLCALFSQIGPVKGCKVIREPGND--PYAFLEFVHHTVAATALAAMNKRVF 71
L ++LL F++ G VK V P D A ++ + A A+ ++++
Sbjct: 3 RLSRKELQQLLQEAFARHGKVK--SVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKI 60
Query: 72 LEKEMKVNWAS 82
K++ V+ A+
Sbjct: 61 GSKKILVSLAT 71
>d1f5xa_ a.87.1.1 (A:) RhoGEF Vav {Mouse (Mus musculus) [TaxId:
10090]}
Length = 208
Score = 26.6 bits (58), Expect = 3.9
Identities = 14/80 (17%), Positives = 27/80 (33%), Gaps = 1/80 (1%)
Query: 157 MNGQWLGSRSIRTNWSTRKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGK 216
M G + +R S PP MT KR + +E Y + + + +
Sbjct: 1 MKGDEIYEDLMRLE-SVPTPPKMTEYDKRCCCLREIQQTEEKYTDTLGSIQQHFMKPLQR 59
Query: 217 DLNEELVSKVFSPFGTIVDI 236
L + + +F + +
Sbjct: 60 FLKPQDMETIFVNIEELFSV 79
>d1sdma_ c.37.1.9 (A:) Kinesin heavy chain-like protein {Potato
(Solanum tuberosum) [TaxId: 4113]}
Length = 364
Score = 26.5 bits (57), Expect = 6.5
Identities = 18/168 (10%), Positives = 41/168 (24%), Gaps = 11/168 (6%)
Query: 174 RKPPAMTNERKRQNSHTKTITFDEVYNQSSPTNCTVYCGGFGKDLNEELVSKVFSPFGTI 233
R T E ++ K +D V++ ++ T V+ + + LV +
Sbjct: 25 RSVDEFTVEHLWKDDKAKQHMYDRVFDGNA-TQDDVF------EDTKYLVQSAVDGYNVC 77
Query: 234 VDIRVFKEKGYAFVKFTTKETAT---HAIESIHNTDINGHTVKCFWGKESENNSTLAQPS 290
+ G F + A+ + F K
Sbjct: 78 IFAYGQTGSGKTFTIYGADSNPGLTPRAMSELFRIMKKDSNKFSFSLKAYMVELYQDTLV 137
Query: 291 APTTPQPNSTAPQFPYIYNQQMGYWYPQAAAYTATAAQLPQQFYQYGQ 338
P+ + + + + + + + Q G
Sbjct: 138 DLLLPKQAKR-LKLDIKKDSKGMVSVENVTVVSISTYEELKTIIQRGS 184
>d2c9aa2 b.29.1.25 (A:21-183) Receptor-type tyrosine-protein
phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}
Length = 163
Score = 25.3 bits (54), Expect = 9.0
Identities = 13/120 (10%), Positives = 33/120 (27%), Gaps = 6/120 (5%)
Query: 274 CFWGKESENNSTLAQPSAPTTPQPNSTAPQFPYIYNQQMGYWYPQAAA------YTATAA 327
C + + ++ Q + T P + P ++ G Q A
Sbjct: 16 CGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTH 75
Query: 328 QLPQQFYQYGQLGYPQGYVGMVGRQVPGWQGIPGAQPTAQQMAVAQAQPSMMAAYAMQQF 387
+ ++ + P G + + + G G P + ++ + +
Sbjct: 76 CIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFY 135
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.130 0.395
Gapped
Lambda K H
0.267 0.0463 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,428,440
Number of extensions: 65253
Number of successful extensions: 560
Number of sequences better than 10.0: 1
Number of HSP's gapped: 430
Number of HSP's successfully gapped: 246
Length of query: 390
Length of database: 2,407,596
Length adjustment: 87
Effective length of query: 303
Effective length of database: 1,213,086
Effective search space: 367565058
Effective search space used: 367565058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.2 bits)