BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2620
(441 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P50395|GDIB_HUMAN Rab GDP dissociation inhibitor beta OS=Homo sapiens GN=GDI2 PE=1
SV=2
Length = 445
Score = 623 bits (1607), Expect = e-178, Method: Compositional matrix adjust.
Identities = 293/435 (67%), Positives = 356/435 (81%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
M+EEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGESASITPLE+L+ +F
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK EGS+V+KGGKI KVP
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS LMGLFEKRRFR FLVY+ F E DP+T++ I+P+ T +Y KF L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KP++EI+++NGKV+GV+S EIARCKQ+ CDPSYV+DRV+K+ QVIR
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++S+ H V+A+G +IA+VSTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE EI+P L+LL ++KFV++SD P DLGTESQIFIS +YDATTHFET C D+ N+
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420
Query: 421 FKRGTGEDFDFSKIK 435
+KR TG +FDF ++K
Sbjct: 421 YKRMTGSEFDFEEMK 435
>sp|P21856|GDIA_BOVIN Rab GDP dissociation inhibitor alpha OS=Bos taurus GN=GDI1 PE=1
SV=1
Length = 447
Score = 621 bits (1602), Expect = e-177, Method: Compositional matrix adjust.
Identities = 292/438 (66%), Positives = 355/438 (81%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
T GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 61 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSYV DRV+K QVIR
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRI 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
+PE E++P L+LL +KFV +SD YEP D G+ESQ+F S SYDATTHFET C D+ ++
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 421 FKRGTGEDFDFSKIKLEE 438
+KR G FDF +K ++
Sbjct: 421 YKRMAGSAFDFENMKRKQ 438
>sp|O97555|GDIA_CANFA Rab GDP dissociation inhibitor alpha OS=Canis familiaris GN=GDI1
PE=2 SV=1
Length = 447
Score = 620 bits (1598), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/438 (66%), Positives = 353/438 (80%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+++KGGKI KVP
Sbjct: 61 GPPEAMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFIYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQS + +Y KF L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQSTSMRDVYRKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSY+ DRV+K QVIR
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE E++P L+LL +KFV +SD YEP D G+ESQ+F S SYDATTHFET C D+ ++
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 421 FKRGTGEDFDFSKIKLEE 438
+KR G FDF +K ++
Sbjct: 421 YKRMAGSAFDFENMKRKQ 438
>sp|P50398|GDIA_RAT Rab GDP dissociation inhibitor alpha OS=Rattus norvegicus GN=Gdi1
PE=1 SV=1
Length = 447
Score = 620 bits (1598), Expect = e-177, Method: Compositional matrix adjust.
Identities = 290/438 (66%), Positives = 354/438 (80%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSY+ DRV+K QVIR
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE E++P L+LL +KFV +SD YEP D G+ESQ+F S SYDATTHFET C D+ ++
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 421 FKRGTGEDFDFSKIKLEE 438
+KR G FDF +K ++
Sbjct: 421 YKRMAGSAFDFENMKRKQ 438
>sp|P50396|GDIA_MOUSE Rab GDP dissociation inhibitor alpha OS=Mus musculus GN=Gdi1 PE=1
SV=3
Length = 447
Score = 619 bits (1597), Expect = e-176, Method: Compositional matrix adjust.
Identities = 290/438 (66%), Positives = 354/438 (80%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQILE 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSY+ DRV+K QVIR
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVQKAGQVIRI 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETA 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE E++P L+LL +KFV +SD YEP D G+ESQ+F S SYDATTHFET C D+ ++
Sbjct: 361 EPEKEVEPALELLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 421 FKRGTGEDFDFSKIKLEE 438
+KR G FDF +K ++
Sbjct: 421 YKRMAGSAFDFENMKRKQ 438
>sp|Q8HXX7|GDIA_MACFA Rab GDP dissociation inhibitor alpha OS=Macaca fascicularis GN=GDI1
PE=2 SV=1
Length = 447
Score = 619 bits (1596), Expect = e-176, Method: Compositional matrix adjust.
Identities = 290/438 (66%), Positives = 354/438 (80%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSY+ DRV+K QVIR
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
+PE E++P L+LL +KFV +SD YEP D G ESQ+F S SYDATTHFET C D+ ++
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 421 FKRGTGEDFDFSKIKLEE 438
+KR G FDF +K ++
Sbjct: 421 YKRMAGMAFDFENMKRKQ 438
>sp|Q7YQM0|GDIA_PONPY Rab GDP dissociation inhibitor alpha OS=Pongo pygmaeus GN=GDI1 PE=2
SV=1
Length = 447
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 290/438 (66%), Positives = 354/438 (80%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSY+ DRV+K QVIR
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
+PE E++P L+LL +KFV +SD YEP D G ESQ+F S SYDATTHFET C D+ ++
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 421 FKRGTGEDFDFSKIKLEE 438
+KR G FDF +K ++
Sbjct: 421 YKRMAGTAFDFENMKRKQ 438
>sp|O97556|GDIB_CANFA Rab GDP dissociation inhibitor beta OS=Canis familiaris GN=GDI2
PE=2 SV=1
Length = 445
Score = 619 bits (1595), Expect = e-176, Method: Compositional matrix adjust.
Identities = 288/435 (66%), Positives = 354/435 (81%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
M+EEYD IVLGTGL ECILSG+++V+GKKVLH+DRN YYGGESASITPLE+L+ +F
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMTVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWN+DLIPKFLMANG LVK+L++T VTRYL+FK EGS+V+KGGKI KVP
Sbjct: 61 APPASMGRGRDWNLDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS LMGLFEKRRFR FLVY+ F E DP+T++ I+P+ ++Y KF L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTAIGEVYKKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KP++EI+++NGKV+GV+S E+ARCKQ+ CDPSYV+DRV+K+ QVIR
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEVARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++S H V+A+G +IA+VSTT ET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIVSTTAETK 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE EI+P L+LL ++KFV++SD P DLGTESQIFIS +YDATTHFET C D+ N+
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKNI 420
Query: 421 FKRGTGEDFDFSKIK 435
+KR TG +FDF ++K
Sbjct: 421 YKRMTGSEFDFEEMK 435
>sp|Q5RCE1|GDIB_PONAB Rab GDP dissociation inhibitor beta OS=Pongo abelii GN=GDI2 PE=2
SV=1
Length = 445
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 291/435 (66%), Positives = 355/435 (81%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
M+EEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGESASITPLE+L+ ++
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRYKIPG 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK EGS+V+KGGKI KVP
Sbjct: 61 SPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS LMGLFEKRRFR FLVY+ F E DP+T++ I+P+ T +Y KF L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGIDPKKTTMRDVYKKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCYETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KP++EI+++NGKV+GV+S EIARCKQ+ CDPSYV+DRV+K+ QVIR
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++S+ H V+A+G +IA+VSTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE EI+P L+LL ++KFV++SD P DLGTES IFIS +YDATTHFET C D+ N+
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESLIFISRTYDATTHFETTCDDIKNI 420
Query: 421 FKRGTGEDFDFSKIK 435
+KR TG +FDF ++K
Sbjct: 421 YKRMTGSEFDFEEMK 435
>sp|P60028|GDIA_PANTR Rab GDP dissociation inhibitor alpha OS=Pan troglodytes GN=GDI1
PE=2 SV=1
Length = 447
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 289/438 (65%), Positives = 354/438 (80%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + T+ RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSY+ DRV+K QVIR
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
+PE E++P L+LL +KFV +SD YEP D G ESQ+F S SYDATTHFET C D+ ++
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 421 FKRGTGEDFDFSKIKLEE 438
+KR G FDF +K ++
Sbjct: 421 YKRMAGTAFDFENMKRKQ 438
>sp|P31150|GDIA_HUMAN Rab GDP dissociation inhibitor alpha OS=Homo sapiens GN=GDI1 PE=1
SV=2
Length = 447
Score = 618 bits (1594), Expect = e-176, Method: Compositional matrix adjust.
Identities = 289/438 (65%), Positives = 354/438 (80%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 1 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 61 GPPESMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 121 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQTTSMRDVYRKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + T+ RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCLETVNRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSY+ DRV+K QVIR
Sbjct: 241 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYIPDRVRKAGQVIRI 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
+PE E++P L+LL +KFV +SD YEP D G ESQ+F S SYDATTHFET C D+ ++
Sbjct: 361 DPEKEVEPALELLEPIDQKFVAISDLYEPIDDGCESQVFCSCSYDATTHFETTCNDIKDI 420
Query: 421 FKRGTGEDFDFSKIKLEE 438
+KR G FDF +K ++
Sbjct: 421 YKRMAGTAFDFENMKRKQ 438
>sp|P50399|GDIB_RAT Rab GDP dissociation inhibitor beta OS=Rattus norvegicus GN=Gdi2
PE=1 SV=2
Length = 445
Score = 617 bits (1591), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/435 (65%), Positives = 357/435 (82%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
M+EEYD IVLGTGL ECILSG++SV+GKKVLH+D+N YYGGESASITPLE+L+ +F
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L+ T VTRY++FK +EGS+V+KGGKI KVP
Sbjct: 61 QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS LMGLFEKRRFR FLVY+ F E DP+T++ ++P+ + +Y KF L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGH+LALYR D+Y++ TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KP++EI+++NGKVVGV+S EIARCKQ+ CDPSYV+DRV+K+ QVIR
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++S+ H V+A+G +IA+VSTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE EI+P L+LL ++KFV++SD + P DLGT+SQIFIS +YDATTHFET C D+ ++
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDI 420
Query: 421 FKRGTGEDFDFSKIK 435
+KR TG +FDF ++K
Sbjct: 421 YKRMTGSEFDFEEMK 435
>sp|Q61598|GDIB_MOUSE Rab GDP dissociation inhibitor beta OS=Mus musculus GN=Gdi2 PE=1
SV=1
Length = 445
Score = 617 bits (1591), Expect = e-176, Method: Compositional matrix adjust.
Identities = 287/435 (65%), Positives = 357/435 (82%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
M+EEYD IVLGTGL ECILSG++SV+GKKVLH+D+N YYGGESASITPLE+L+ +F
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDQNPYYGGESASITPLEDLYKRFKLPG 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L+ T VTRY++FK +EGS+V+KGGKI KVP
Sbjct: 61 QPPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYMDFKVIEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS LMGLFEKRRFR FLVY+ F E DP+T++ ++P+ + +Y KF L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDEKDPRTFEGVDPKKTSMRDVYKKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGH+LALYR D+Y++ TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHSLALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KP++EI+++NGKVVGV+S EIARCKQ+ CDPSYV+DRV+K+ QVIR
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVVGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++S+ H V+A+G +IA+VSTTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISFAHNVAAQGKYIAIVSTTVETK 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE EI+P L+LL ++KFV++SD + P DLGT+SQIFIS +YDATTHFET C D+ ++
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLFVPKDLGTDSQIFISRAYDATTHFETTCDDIKDI 420
Query: 421 FKRGTGEDFDFSKIK 435
+KR TG +FDF ++K
Sbjct: 421 YKRMTGSEFDFEEMK 435
>sp|Q6Q7J2|GDIB_PIG Rab GDP dissociation inhibitor beta OS=Sus scrofa GN=GDI2 PE=2 SV=1
Length = 445
Score = 616 bits (1589), Expect = e-175, Method: Compositional matrix adjust.
Identities = 288/435 (66%), Positives = 353/435 (81%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
M+EEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGESASITPLE+L+ +F
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFNIPG 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L+ T VTRYL+FK EGS+V+KGGKI KVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS LMGLFEKRRFR FLVY+ F E DP+T++ ++P+ ++Y KF L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGVDPKKTAMREVYKKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KP++EI+++NGKV+GV+S EIARCKQ+ CDPSYV+DRV+K+ QVIR
Sbjct: 241 LSAIYGGTYMLNKPIEEIIVQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++S H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTSDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE EI+P L+LL ++KFV++SD P DLGT+SQIFIS +YDATTHFET C D+ ++
Sbjct: 361 EPEKEIRPALELLKPIEQKFVSISDLLVPKDLGTDSQIFISRTYDATTHFETTCGDIKDI 420
Query: 421 FKRGTGEDFDFSKIK 435
+KR TG +FDF ++K
Sbjct: 421 YKRMTGSEFDFEEMK 435
>sp|P50397|GDIB_BOVIN Rab GDP dissociation inhibitor beta OS=Bos taurus GN=GDI2 PE=2 SV=3
Length = 445
Score = 616 bits (1588), Expect = e-175, Method: Compositional matrix adjust.
Identities = 289/435 (66%), Positives = 353/435 (81%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
M+EEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGESASITPLE+L+ +F
Sbjct: 1 MNEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESASITPLEDLYKRFKIPG 60
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
+ GRGRDWNVDLIPKFLMANG LVK+L+ T VTRYL+FK EGS+V+KGGKI KVP
Sbjct: 61 APPASMGRGRDWNVDLIPKFLMANGQLVKMLLFTEVTRYLDFKVTEGSFVYKGGKIYKVP 120
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS LMGLFEKRRFR FLVY+ F E DP+T++ I+P+ + ++Y KF L +
Sbjct: 121 STEAEALASSLMGLFEKRRFRKFLVYVANFDENDPRTFEGIDPKKTSMREVYKKFDLGQD 180
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 181 VIDFTGHALALYRTDDYLDQPCCETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 240
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KP++EI+++NGKV+GV+S EIARCKQ+ CDPSYV+DRV+K+ QVIR
Sbjct: 241 LSAIYGGTYMLNKPIEEIIMQNGKVIGVKSEGEIARCKQLICDPSYVKDRVEKVGQVIRV 300
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++S H V+A+G +IA+ STTVET
Sbjct: 301 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISSAHNVAAQGKYIAIASTTVETK 360
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
PE EI+P L+LL ++KFV++SD P DLGTESQIFIS +YDATTHFET C D+ ++
Sbjct: 361 EPEKEIRPALELLEPIEQKFVSISDLLVPKDLGTESQIFISRTYDATTHFETTCDDIKDI 420
Query: 421 FKRGTGEDFDFSKIK 435
+KR G +FDF ++K
Sbjct: 421 YKRMMGSEFDFEEMK 435
>sp|Q10305|GDI1_SCHPO Probable secretory pathway GDP dissociation inhibitor 1
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=gdi1 PE=3 SV=1
Length = 440
Score = 499 bits (1284), Expect = e-140, Method: Compositional matrix adjust.
Identities = 244/443 (55%), Positives = 323/443 (72%), Gaps = 7/443 (1%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKF--GS 58
MDEEYD IVLGTGL EC+LSG+LSV GKKVLHIDRN YYG +SAS+ L +L++ F G
Sbjct: 1 MDEEYDVIVLGTGLTECVLSGLLSVDGKKVLHIDRNDYYGADSASLN-LTQLYALFRPGE 59
Query: 59 TLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISK 118
P+ + GR RDW VDL+PKFLMANG L +LI+T VTRY+EFK + GSYV++ G+I+K
Sbjct: 60 QRPE--SLGRDRDWCVDLVPKFLMANGDLTNILIYTDVTRYIEFKQIAGSYVYRDGRIAK 117
Query: 119 VPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLD 178
VP ++ EAL S LM LFEKRR + FL ++ + E DP T+KDIN + ++ KFGL
Sbjct: 118 VPGNEMEALKSPLMSLFEKRRAKKFLEWVNNYREDDPSTYKDINIDRDSMESVFKKFGLQ 177
Query: 179 PNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSF 238
T+DF GHA+ALY DD Y+ A T RI LY+ S+A++GKSPY+YP+YGLGELPQ F
Sbjct: 178 SGTQDFIGHAMALYLDDAYLKKPARETRERILLYASSIAKFGKSPYIYPLYGLGELPQGF 237
Query: 239 ARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQV 297
ARLSAIYGGTYML++PVDEIV ++G +GVRSG ++A+ KQ+ DPSY +++V+ + ++
Sbjct: 238 ARLSAIYGGTYMLNQPVDEIVYGDDGVAIGVRSGDQVAKAKQIIGDPSYFREKVRSVGRL 297
Query: 298 IRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTV 357
+R IC+++HPIPNT + S QIIIPQ QV RK DIY++ +S H V KG+++A++ST V
Sbjct: 298 VRAICILNHPIPNTDNLDSVQIIIPQNQVKRKHDIYIAGISSVHNVCPKGYYLAIISTIV 357
Query: 358 ETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDV 417
ET NP EI PGL LLG + F V + YEP GT+ Q +IS S DAT+HFET+ DV
Sbjct: 358 ETANPLSEIAPGLKLLGPVVESFSRVQEIYEPVTDGTKDQCYISKSVDATSHFETLTCDV 417
Query: 418 VNLFKRGTGEDFDF-SKIKLEEE 439
+++KR TG D + K+E++
Sbjct: 418 RDIYKRMTGTDLVLKQRPKMEDQ 440
>sp|P39958|GDI1_YEAST Rab GDP-dissociation inhibitor OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=GDI1 PE=1 SV=1
Length = 451
Score = 471 bits (1212), Expect = e-132, Method: Compositional matrix adjust.
Identities = 231/434 (53%), Positives = 313/434 (72%), Gaps = 8/434 (1%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFG--- 57
+D +YD IVLGTG+ ECILSG+LSV GKKVLHID+ +YGGE+AS+T L +L+ KF
Sbjct: 6 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVT-LSQLYEKFKQNP 64
Query: 58 -STLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKI 116
S E FG+ RDWNVDLIPKFLMANG L +LIHT VTRY++FK V GSYVFK GKI
Sbjct: 65 ISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKI 124
Query: 117 SKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFG 176
KVP ++ EA++S LMG+FEKRR + FL +I + E D T + ++ T ++Y KFG
Sbjct: 125 YKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFG 184
Query: 177 LDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQ 236
L +TK+F GHA+AL+ +D+Y+ A + RI LY S+ARYGKSPYLYPMYGLGELPQ
Sbjct: 185 LGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQ 244
Query: 237 SFARLSAIYGGTYMLDKPVDEIVI--ENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKL 294
FARLSAIYGGTYMLD P+DE++ + GK GV++ + V DP+Y ++ K
Sbjct: 245 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 304
Query: 295 NQ-VIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMV 353
Q VIR IC+++HP+PNT +A S QIIIPQ Q+ RKSDIYV++VS H V +KG ++A++
Sbjct: 305 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAII 364
Query: 354 STTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETV 413
ST +ETD P +E++P LLG ++KF+ +++ +EP + G++ I++S SYDA++HFE++
Sbjct: 365 STIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESM 424
Query: 414 CTDVVNLFKRGTGE 427
DV +++ R TG
Sbjct: 425 TDDVKDIYFRVTGH 438
>sp|Q9V8W3|RABEP_DROME Rab proteins geranylgeranyltransferase component A OS=Drosophila
melanogaster GN=Rep PE=2 SV=1
Length = 511
Score = 138 bits (348), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 89/315 (28%), Positives = 143/315 (45%), Gaps = 34/315 (10%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
+ E++D +V+GTG E ++ S GK VLH+D N+YYG +S + ++ L ++ +
Sbjct: 5 LPEQFDLVVIGTGFTESCIAAAGSRIGKSVLHLDSNEYYGDVWSSFS-MDALCARLDQEV 63
Query: 61 PDEVTFGRGR---------------DWN------------VDLIPKFLMANGSLVKLLIH 93
R WN +DL P+ L A G LV+LLI
Sbjct: 64 EPHSALRNARYTWHSMEKESETDAQSWNRDSVLAKSRRFSLDLCPRILYAAGELVQLLIK 123
Query: 94 TGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEA 153
+ + RY EF++V+ + G+I VP + + + + + EKR FL ++ E
Sbjct: 124 SNICRYAEFRAVDHVCMRHNGEIVSVPCSRSDVFNTKTLTIVEKRLLMKFLTACNDYGE- 182
Query: 154 DPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYS 213
D + + T + + A+A+ + ++R + +
Sbjct: 183 DKCNEDSLEFRGRTFLEYLQAQRVTEKISSCVMQAIAMCGPSTSFEE----GMQRTQRFL 238
Query: 214 DSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRSGT 272
SL RYG +P+L+PMYG GELPQ F RL A+YGG Y L + VD+I ++ N + S
Sbjct: 239 GSLGRYGNTPFLFPMYGCGELPQCFCRLCAVYGGIYCLKRAVDDIALDSNSNEFLLSSAG 298
Query: 273 EIARCKQVYCDPSYV 287
+ R K V P Y
Sbjct: 299 KTLRAKNVVSAPGYT 313
>sp|P26374|RAE2_HUMAN Rab proteins geranylgeranyltransferase component A 2 OS=Homo
sapiens GN=CHML PE=1 SV=2
Length = 656
Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 86/305 (28%), Positives = 147/305 (48%), Gaps = 15/305 (4%)
Query: 69 GRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALA 128
GR +N+DL+ K L + G L+ LLI + V+RY+EFK+V F+ GK+ +VP + +
Sbjct: 226 GRRFNIDLVSKLLYSQGLLIDLLIKSDVSRYVEFKNVTRILAFREGKVEQVPCSRADVFN 285
Query: 129 SDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHA 188
S + + EKR FL + E+ E P ++ Q + + L K L PN + F H+
Sbjct: 286 SKELTMVEKRMLMKFLTFCLEY-EQHPDEYQAFR-QCSFSEYLKTK-KLTPNLQHFVLHS 342
Query: 189 LALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGT 248
+A+ + I + K + L R+G +P+L+P+YG GE+PQ F R+ A++GG
Sbjct: 343 IAMTSESSCT---TIDGLNATKNFLQCLGRFGNTPFLFPLYGQGEIPQGFCRMCAVFGGI 399
Query: 249 YMLDKPVDEIVI--ENGKVVGV--RSGTEIARCKQVYCDPSYVQDRVK---KLNQVIRCI 301
Y L V V+ E+G+ + G I K + SY+ + + Q+ R +
Sbjct: 400 YCLRHKVQCFVVDKESGRCKAIIDHFGQRI-NAKYFIVEDSYLSEETCSNVQYKQISRAV 458
Query: 302 CLMDHPIPNTK-DALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
+ D I T D + +I+P + + L S T + + + ++ +T
Sbjct: 459 LITDQSILKTDLDQQTSILIVPPAEPGACAVRVTELCSSTMTCMKDTYLVHLTCSSSKTA 518
Query: 361 NPELE 365
+LE
Sbjct: 519 REDLE 523
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
E+D +++GTGL E IL+ S SG++VLHID YYGG AS +
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHIDSRSYYGGNWASFS 51
>sp|Q9QXG2|RAE1_MOUSE Rab proteins geranylgeranyltransferase component A 1 OS=Mus
musculus GN=Chm PE=2 SV=1
Length = 665
Score = 124 bits (311), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 104/193 (53%), Gaps = 6/193 (3%)
Query: 69 GRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALA 128
GR +N+DL+ K L + G L+ LLI + V+RY EFK++ F+ G + +VP + +
Sbjct: 236 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFN 295
Query: 129 SDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHA 188
S + + EKR FL + E+ E P +K + T ++ L PN + F H+
Sbjct: 296 SKQLTMVEKRMLMKFLTFCVEY-EDHPDEYKAY--EETTFSEYLKTQKLTPNLQYFVLHS 352
Query: 189 LALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGT 248
+A+ + + ++ K + L RYG +P+L+P+YG GELPQ F R+ A++GG
Sbjct: 353 IAMTSE---TTSSTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 409
Query: 249 YMLDKPVDEIVIE 261
Y L V +V++
Sbjct: 410 YCLRHSVQCLVVD 422
Score = 52.4 bits (124), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
++D IV+GTGL E I++ S SG++VLH+D YYGG AS +
Sbjct: 8 DFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
>sp|P37727|RAE1_RAT Rab proteins geranylgeranyltransferase component A 1 OS=Rattus
norvegicus GN=Chm PE=1 SV=1
Length = 650
Score = 123 bits (309), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 104/193 (53%), Gaps = 6/193 (3%)
Query: 69 GRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALA 128
GR +N+DL+ + L + G L+ LLI + V+RY EFK++ F+ G + +VP + +
Sbjct: 221 GRRFNIDLVSQLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFN 280
Query: 129 SDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHA 188
S + + EKR FL + E+ E P ++ + T ++ L PN + F H+
Sbjct: 281 SKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRAY--EGTTFSEYLKTQKLTPNLQYFVLHS 337
Query: 189 LALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGT 248
+A+ + + ++ K + L RYG +P+L+P+YG GELPQ F R+ A++GG
Sbjct: 338 IAMTSE---TTSCTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 394
Query: 249 YMLDKPVDEIVIE 261
Y L V +V++
Sbjct: 395 YCLRHSVQCLVVD 407
Score = 52.4 bits (124), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 32/47 (68%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
+ ++D IV+GTGL E I++ S SG++VLH+D YYGG AS +
Sbjct: 5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS 51
>sp|P24386|RAE1_HUMAN Rab proteins geranylgeranyltransferase component A 1 OS=Homo
sapiens GN=CHM PE=1 SV=3
Length = 653
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 80/304 (26%), Positives = 144/304 (47%), Gaps = 13/304 (4%)
Query: 69 GRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALA 128
GR +N+DL+ K L + G L+ LLI + V+RY EFK++ F+ G++ +VP + +
Sbjct: 224 GRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGRVEQVPCSRADVFN 283
Query: 129 SDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHA 188
S + + EKR FL + E+ E P +K + T + L PN + H+
Sbjct: 284 SKQLTMVEKRMLMKFLTFCMEY-EKYPDEYKGY--EEITFYEYLKTQKLTPNLQYIVMHS 340
Query: 189 LALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGT 248
+A+ + I ++ K + L RYG +P+L+P+YG GELPQ F R+ A++GG
Sbjct: 341 IAMTSE---TASSTIDGLKATKNFLHCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGI 397
Query: 249 YMLDKPVDEIVIE----NGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLN--QVIRCIC 302
Y L V +V++ K + + G I + D + ++ ++ Q+ R +
Sbjct: 398 YCLRHSVQCLVVDKESRKCKAIIDQFGQRIISEHFLVEDSYFPENMCSRVQYRQISRAVL 457
Query: 303 LMDHPIPNTKDALSCQII-IPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETDN 361
+ D + T I+ +P ++ + + L S T + + + T+ +T
Sbjct: 458 ITDRSVLKTDSDQQISILTVPAEEPGTFAVRVIELCSSTMTCMKGTYLVHLTCTSSKTAR 517
Query: 362 PELE 365
+LE
Sbjct: 518 EDLE 521
Score = 54.3 bits (129), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 31/44 (70%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
E+D IV+GTGL E I++ S SG++VLH+D YYGG AS +
Sbjct: 8 EFDVIVIGTGLPESIIAAACSRSGRRVLHVDSRSYYGGNWASFS 51
>sp|Q9QZD5|RAE2_MOUSE Rab proteins geranylgeranyltransferase component A 2 OS=Mus
musculus GN=Chml PE=2 SV=2
Length = 621
Score = 118 bits (295), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 81/304 (26%), Positives = 147/304 (48%), Gaps = 13/304 (4%)
Query: 69 GRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALA 128
R +N+DL+ K L + GSL+ LLI + V+RY EFK+V F GK+ +VP + +
Sbjct: 225 SRRFNIDLVSKPLYSQGSLIDLLIKSNVSRYAEFKNVTRILAFWEGKVEQVPCSRADVFN 284
Query: 129 SDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHA 188
S + + EKR FL + ++ E ++D Q + + L K L PN + F H+
Sbjct: 285 SKELSMVEKRMLMKFLTFCLDY-EQHSDEYQDFK-QCSFSDYLKTK-KLTPNLQHFILHS 341
Query: 189 LALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGT 248
+A+ + + ++ K + L R+G +P+++P+YG GE+PQ F R+ A++GG
Sbjct: 342 IAMTSESSCTT---LDGLQATKNFLQCLGRFGNTPFIFPLYGHGEIPQCFCRMCAVFGGV 398
Query: 249 YMLDKPVDEIVI--ENGKVVGVRS--GTEIARCKQVYCDPSYVQDRVKKLN--QVIRCIC 302
Y L V +V+ ++G+ G+ G I+ + D ++ + Q+ R +
Sbjct: 399 YCLRHKVQCLVVDKDSGRCKGIIDAFGQRISANYFIVEDSYLPKETCSNVQYKQISRAVL 458
Query: 303 LMDHPIPNT-KDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETDN 361
+ D I T D +++P + S + L S T + + + ++ +T
Sbjct: 459 ITDQSILKTDSDQQISILVVPPLEPGTTSVRVMELCSSTMTCMKDSYLVHLTCSSSKTAR 518
Query: 362 PELE 365
+LE
Sbjct: 519 EDLE 522
Score = 53.5 bits (127), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 31/44 (70%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
E+D +++GTGL E IL+ S SG++VLH+D YYGG AS +
Sbjct: 8 EFDVVIIGTGLPESILAAACSRSGQRVLHVDSRSYYGGNWASFS 51
>sp|P32864|RAEP_YEAST Rab proteins geranylgeranyltransferase component A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRS6 PE=1
SV=2
Length = 603
Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 103/397 (25%), Positives = 184/397 (46%), Gaps = 40/397 (10%)
Query: 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT--PLEELFSKF------- 56
D ++ GTG+ E +L+ L+ G VLHID+N YYG SA++T ++ ++
Sbjct: 48 DVLIAGTGMVESVLAAALAWQGSNVLHIDKNDYYGDTSATLTVDQIKRWVNEVNEGSVSC 107
Query: 57 --GSTLPDEVTFGRG----RDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYV 110
+ L G G RD+ +DL PK L A L+ +LI + V +YLEF+S+ +
Sbjct: 108 YKNAKLYVSTLIGSGKYSSRDFGIDLSPKILFAKSDLLSILIKSRVHQYLEFQSLSNFHT 167
Query: 111 FKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQ 170
++ K+ ++E + L KR F+ ++ + EA + W+ P + T
Sbjct: 168 YENDCFEKLTNTKQEIFTDQNLPLMTKRNLMKFIKFVLNW-EAQTEIWQ---PYAERTMS 223
Query: 171 --LYDKFGLD-PNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYP 227
L +KF L+ P + ++ L D +N ++RI+ Y S YG P L
Sbjct: 224 DFLGEKFKLEKPQVFELI-FSIGLCYD---LNVKVPEALQRIRRYLTSFDVYGPFPALCS 279
Query: 228 MY-GLGELPQSFARLSAIYGGTYMLDKPVDEIVIEN--GKVVGVRSGTEIARCKQVYCDP 284
Y G GEL Q F R +A+ G TY L+ +++V N KV + G+++ ++V P
Sbjct: 280 KYGGPGELSQGFCRSAAVGGATYKLN---EKLVSFNPTTKVATFQDGSKVEVSEKVIISP 336
Query: 285 SYVQDRVKKLN----QVIRCICLMDHPIP---NTKDALSCQIIIPQK-QVNRKSDIYVSL 336
+ K + QV R C++++P N ++ + + P + K + +
Sbjct: 337 TQAPKDSKHVPQQQYQVHRLTCIVENPCTEWFNEGESAAMVVFPPGSLKSGNKEVVQAFI 396
Query: 337 VSYTHQVSAKGWFIAMVSTTVETDNPELEIKPGLDLL 373
+ ++ +G + +STT + E++I L+ +
Sbjct: 397 LGAGSEICPEGTIVWYLSTTEQGPRAEMDIDAALEAM 433
>sp|O93831|RAEP_CANAX Rab proteins geranylgeranyltransferase component A OS=Candida
albicans GN=MRS6 PE=3 SV=1
Length = 640
Score = 98.2 bits (243), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 82/269 (30%), Positives = 131/269 (48%), Gaps = 31/269 (11%)
Query: 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGST------ 59
D +++GTGL+E IL+ LS G +VLHID N YYG +++T +E+L G
Sbjct: 5 DVLIIGTGLQESILAAALSWQGTQVLHIDSNTYYGDSCSTLT-IEQLKKWCGDVNSGKIH 63
Query: 60 -LPDEVTFGRG---------RDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSY 109
D + G +D+ +DL PK + L+ LLI + V RYLEF+S+ +
Sbjct: 64 QFQDAQIYIPGGKQSNQYTSKDYGIDLTPKIMFCQSDLLSLLIKSRVYRYLEFQSLSNFH 123
Query: 110 VFKGGKI-SKVPVDQKEALASD-LMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSAT 167
VF+ KV K+ + +D + L KR +L+ +F DP + + P + T
Sbjct: 124 VFENDDFQQKVNATTKQDIFTDKSLSLMTKR----YLMKFLKFLLLDPDYKQRVKPYADT 179
Query: 168 TAQLY--DKFGLDPNTKDFTGHALAL-YRDDEYINDLAIHTIRRIKLYSDSLARYGKSPY 224
Q++ +F L+ + +++ L Y++ I R+K + S YGK P
Sbjct: 180 PIQVFLQQEFKLEEPQINELVYSIGLSYKEQTSTKQALI----RMKRFLSSFDVYGKFPC 235
Query: 225 LYPMY-GLGELPQSFARLSAIYGGTYMLD 252
+ + G GEL Q F R +A+ G TY L+
Sbjct: 236 MVSKFGGPGELSQGFCRSAAVAGTTYKLN 264
>sp|O60112|YG63_SCHPO Uncharacterized Rab geranylgeranyltransferase C15C4.03
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC15C4.03 PE=3 SV=1
Length = 459
Score = 90.1 bits (222), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 80/296 (27%), Positives = 126/296 (42%), Gaps = 34/296 (11%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT--PLEELFSKFGSTLPD 62
YD I++GT L+ ILS LS + ++VLHID N +YG S+T LE++ K
Sbjct: 7 YDVIIVGTNLRNSILSAALSWANQRVLHIDENSFYGEIDGSLTLRDLEQINEKIKKVDSS 66
Query: 63 EVTFGRGRD-----------WNVDLIPKF-----------LMANGSLVKLLIHTGVTRYL 100
++ G N DLIPK + A+ LVKLL T + +YL
Sbjct: 67 QILNDNGSHKSPLKRFEVQFLNKDLIPKNKGSVIQFHPQEIFASSELVKLLSETKIYKYL 126
Query: 101 EFKSVEGSYVFKGG-KISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWK 159
K + + KVP + + + + L KR F+ ++ ++ +
Sbjct: 127 LLKPARSFRLLTSNEEWIKVPESRADIFNNKNLSLASKRIVMRFMKFVSNIADEQNQNLV 186
Query: 160 DINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARY 219
L + F L ++ + L + A+ T+ + Y S Y
Sbjct: 187 KEWESKPFYKFLEEVFQLSGAIEESIIYGLCQSLSKDIPTKDALDTVLK---YFHSFGMY 243
Query: 220 GKSPYLYPMYGLG-ELPQSFARLSAIYGGTYMLDKPVD-----EIVIENGKVVGVR 269
G YL MYG G EL Q F R SA+ GGT+ML + +D +IV+++G + +
Sbjct: 244 GDYSYLLAMYGTGSELCQGFCRSSAVMGGTFMLGQAIDKIDESKIVLKDGSTLSAK 299
>sp|Q2VEX9|CRTSO_DAUCA Prolycopene isomerase, chloroplastic OS=Daucus carota GN=CRTISO
PE=2 SV=1
Length = 615
Score = 45.8 bits (107), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 73/291 (25%), Positives = 115/291 (39%), Gaps = 37/291 (12%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGST--LP 61
EYDAIV+G+G+ + + L+V G KVL +++ GG S + + G T +
Sbjct: 97 EYDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYLIPGGSSG-------YYERDGFTFDVG 149
Query: 62 DEVTFGRGRDWNVDLIPKFLMANGSLVKLL-----IHTGVTRYLEFKSVEGSYVFKGGKI 116
V FG N++LI + L A G ++++ +H + L F
Sbjct: 150 SSVMFGFSDKGNLNLITQALAAVGCKMEVIPDPSTVHFHLPSNLSVLVHREYNEFFSELT 209
Query: 117 SKVPVDQKEAL------ASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDIN-----PQS 165
SK P +KE + + ++ I F + K + + PQ+
Sbjct: 210 SKFP-HEKEGIFKFYGECWKIFNALNSLELKSLEEPIYLFGQFFKKPMECLTLAYYLPQN 268
Query: 166 ATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYL 225
A + KF DP F + +N L I + D YG
Sbjct: 269 A--GDIARKFIKDPEVLSFIDAECFIVST---VNALKTPMINASMVLCDR--HYGG--IN 319
Query: 226 YPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR--SGTEI 274
YP+ G+G + +S A+ G V I++ENGK VGVR +G EI
Sbjct: 320 YPVGGVGGIAKSLAKGLVDQGSEIQYKANVKSIIVENGKAVGVRLANGNEI 370
>sp|Q8S4R4|CRTSO_SOLLC Prolycopene isomerase, chloroplastic OS=Solanum lycopersicum
GN=CRTISO PE=1 SV=1
Length = 615
Score = 41.2 bits (95), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 69/281 (24%), Positives = 117/281 (41%), Gaps = 31/281 (11%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEV 64
YDAIV+G+G+ + + L+V G KVL +++ GG S E KF + V
Sbjct: 98 YDAIVIGSGIGGLVAATQLAVKGAKVLVLEKYVIPGGSSGF---YERDGYKF--DVGSSV 152
Query: 65 TFGRGRDWNVDLIPKFLMANGSLVKLL-----IHTGVTRYLEFKSVEGSYVFKGGKISKV 119
FG N++LI + L A G ++++ +H + L + F +SK
Sbjct: 153 MFGFSDKGNLNLITQALAAVGRKLEVIPDPTTVHFHLPNDLSVRIHREYDDFIEELVSKF 212
Query: 120 PVDQKEALA---SDLMGLFEKRR---FRNFLVYIQEFSEADPKTWKDIN-----PQSATT 168
P +KE + S+ +F ++ I F + K + + PQ+A
Sbjct: 213 P-HEKEGIIKFYSECWKIFNSLNSLELKSLEEPIYLFGQFFKKPLECLTLAYYLPQNA-- 269
Query: 169 AQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPM 228
+ K+ DP F + +N L I + D +G YP+
Sbjct: 270 GSIARKYIRDPGLLSFIDAECFIV---STVNALQTPMINASMVLCDR--HFGG--INYPV 322
Query: 229 YGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR 269
G+GE+ +S A+ +G + V I+++NGK VGV+
Sbjct: 323 GGVGEIAKSLAKGLDDHGSQILYRANVTSIILDNGKAVGVK 363
>sp|Q52QW3|CRTS1_ONCHC Prolycopene isomerase 1, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO1 PE=2 SV=1
Length = 587
Score = 39.3 bits (90), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGST--L 60
EEYDAIV+G+G+ + + L+V G +VL +++ GG S F + G T +
Sbjct: 68 EEYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG-------FFQRDGFTFDV 120
Query: 61 PDEVTFGRGRDWNVDLIPKFLMA 83
V FG N++LI + L A
Sbjct: 121 GSSVMFGFSDKGNLNLITQALEA 143
>sp|Q52QW2|CRTS2_ONCHC Prolycopene isomerase 2, chloroplastic OS=Oncidium hybrid cultivar
GN=CRTISO2 PE=2 SV=1
Length = 587
Score = 39.3 bits (90), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 9/83 (10%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGST--L 60
EEYDAIV+G+G+ + + L+V G +VL +++ GG S F + G T +
Sbjct: 68 EEYDAIVIGSGIGGLVAATQLAVKGARVLVLEKYVIPGGSSG-------FFQRDGFTFDV 120
Query: 61 PDEVTFGRGRDWNVDLIPKFLMA 83
V FG N++LI + L A
Sbjct: 121 GSSVMFGFSDKGNLNLITQALEA 143
>sp|P26484|FIXC_AZOC5 Protein FixC OS=Azorhizobium caulinodans (strain ATCC 43989 / DSM
5975 / ORS 571) GN=fixC PE=3 SV=2
Length = 435
Score = 38.9 bits (89), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS-----ITPLEELFSK 55
+DE++DAIV+G G+ + L+ G KVL ++R +Y G ++ LE+L
Sbjct: 2 IDEKFDAIVVGAGMAGNAATLTLARRGLKVLQLERGEYSGSKNVQGAILYADMLEKLVPD 61
Query: 56 FGSTLPDEVTFGRGRDWNVD 75
F P E R W +D
Sbjct: 62 FREDAPLERHLVEQRFWMLD 81
>sp|P54979|CRTJ_MYXXA zeta-carotene-forming phytoene desaturase OS=Myxococcus xanthus
GN=carA2 PE=1 SV=1
Length = 517
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 36/77 (46%), Gaps = 8/77 (10%)
Query: 215 SLARYGKSPY-------LYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVG 267
S A YG P+ +P GL +PQ+ RL+ G + PV+ I+ + G+ G
Sbjct: 205 SPAVYGLLPFTELGVGIWFPKGGLYAIPQALERLAREEGVRFHYGAPVERILTDGGRTRG 264
Query: 268 VR-SGTEIARCKQVYCD 283
VR G E+ V C+
Sbjct: 265 VRLEGGEVVEADAVLCN 281
>sp|P50532|SMC4_XENLA Structural maintenance of chromosomes protein 4 OS=Xenopus laevis
GN=smc4 PE=1 SV=1
Length = 1290
Score = 36.2 bits (82), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 16/121 (13%)
Query: 252 DKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCICLMDHPIPNT 311
DK ++E+ E+ K + ++ T + CK+ C VQ++ + L Q I+ I +H +
Sbjct: 946 DKSIEELT-EDLKKLEEKATTVMNECKEAECSLPEVQEQHRSLLQEIKAIQEKEHAL--Q 1002
Query: 312 KDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWF--IAMVSTTVETDNPELEIKPG 369
K+AL+ ++ I Q D +++ HQ K W I +S D PE E+ PG
Sbjct: 1003 KEALNIRLNIEQ------IDSHIA----EHQSKIKYWQKEITKISLHKIEDIPE-EVLPG 1051
Query: 370 L 370
L
Sbjct: 1052 L 1052
>sp|A4TQJ9|RF3_YERPP Peptide chain release factor 3 OS=Yersinia pestis (strain Pestoides
F) GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|Q1CMZ7|RF3_YERPN Peptide chain release factor 3 OS=Yersinia pestis bv. Antiqua
(strain Nepal516) GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|A9R055|RF3_YERPG Peptide chain release factor 3 OS=Yersinia pestis bv. Antiqua
(strain Angola) GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|Q8ZIR0|RF3_YERPE Peptide chain release factor 3 OS=Yersinia pestis GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|Q1C156|RF3_YERPA Peptide chain release factor 3 OS=Yersinia pestis bv. Antiqua
(strain Antiqua) GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|B1JL43|RF3_YERPY Peptide chain release factor 3 OS=Yersinia pseudotuberculosis
serotype O:3 (strain YPIII) GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|Q66EW6|RF3_YERPS Peptide chain release factor 3 OS=Yersinia pseudotuberculosis
serotype I (strain IP32953) GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|B2K3I2|RF3_YERPB Peptide chain release factor 3 OS=Yersinia pseudotuberculosis
serotype IB (strain PB1/+) GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|A7FMI1|RF3_YERP3 Peptide chain release factor 3 OS=Yersinia pseudotuberculosis
serotype O:1b (strain IP 31758) GN=prfC PE=3 SV=1
Length = 529
Score = 35.0 bits (79), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 44/165 (26%), Positives = 68/165 (41%), Gaps = 33/165 (20%)
Query: 245 YGGTY--MLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCIC 302
YGG +LD P E E+ R+ T + C V V+DR +KL +V R
Sbjct: 79 YGGCLVNLLDTPGHEDFSEDT----YRTLTAVDCCLMVIDAAKGVEDRTRKLMEVTR--- 131
Query: 303 LMDHPIPNTKDALSCQIIIPQK---QVNRKSDIYVSLVS--------------------Y 339
L D PI + L +I P + +V R+ +I S ++ Y
Sbjct: 132 LRDTPILTFMNKLDREIRDPMEVLDEVERELNIACSPITWPIGCGKSFKGVYHLHKDETY 191
Query: 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVS 384
+Q S KG I V +NP+L++ G DL ++++ V
Sbjct: 192 LYQ-SGKGHTIQEVRIVKGLNNPDLDVAVGEDLAKQFRQELELVQ 235
>sp|Q9M9Y8|CRTSO_ARATH Prolycopene isomerase, chloroplastic OS=Arabidopsis thaliana
GN=CRTISO PE=2 SV=2
Length = 595
Score = 34.7 bits (78), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 65/282 (23%), Positives = 111/282 (39%), Gaps = 33/282 (11%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGST--LPD 62
YDAIV+G+G+ + + L+V +VL +++ GG S + + G T +
Sbjct: 78 YDAIVIGSGIGGLVAATQLAVKEARVLVLEKYLIPGGSSG-------FYERDGYTFDVGS 130
Query: 63 EVTFGRGRDWNVDLIPKFLMANGSLVKLL-----IHTGVTRYLEFKSVEGSYVFKGGKIS 117
V FG N++LI + L A G ++++ +H + L + F S
Sbjct: 131 SVMFGFSDKGNLNLITQALKAVGRKMEVIPDPTTVHFHLPNNLSVRIHREYDDFIAELTS 190
Query: 118 KVPVDQKEALA--SDLMGLF------EKRRFRNFLVYIQEFSEA--DPKTWKDINPQSAT 167
K P +++ L D +F E + + +F + + T PQ+A
Sbjct: 191 KFPHEKEGILGFYGDCWKIFNSLNSLELKSLEEPIYLFGQFFQKPLECLTLAYYLPQNA- 249
Query: 168 TAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYP 227
+ K+ DP F + +N L I + D YG YP
Sbjct: 250 -GAIARKYIKDPQLLSFIDAECFIVST---VNALQTPMINASMVLCDR--HYGG--INYP 301
Query: 228 MYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR 269
+ G+G + +S A G V I++++GK VGVR
Sbjct: 302 VGGVGGIAKSLAEGLVDQGSEIQYKANVKSIILDHGKAVGVR 343
>sp|Q53208|FIXC_RHISN Protein FixC OS=Rhizobium sp. (strain NGR234) GN=fixC PE=3 SV=1
Length = 435
Score = 34.3 bits (77), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS-----ITPLEELFSKF 56
+E +DAIV+G G+ + ++ G KVL ++R +Y G ++ LE + F
Sbjct: 3 EERFDAIVVGAGMSGNAAAYTMASRGLKVLQLERGEYPGSKNVQGAILYANMLETIIPDF 62
Query: 57 GSTLPDEVTFGRGRDWNVD 75
P E R W D
Sbjct: 63 RDDAPLERHLVEQRFWVTD 81
>sp|P09820|FIXC_RHIME Protein FixC OS=Rhizobium meliloti (strain 1021) GN=fixC PE=3
SV=1
Length = 435
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 5/78 (6%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS-----ITPLEELFSKFG 57
E++DAIV+G G+ + ++ G KVL ++R +Y G ++ LE + F
Sbjct: 4 EKFDAIVVGAGMSGNAAAYAMASRGLKVLQLERGEYPGSKNVQGAIMYANMLEAIIPDFR 63
Query: 58 STLPDEVTFGRGRDWNVD 75
+ P E R W +D
Sbjct: 64 NDAPLERHLVEQRFWIMD 81
>sp|Q1QYD5|BIOB_CHRSD Biotin synthase OS=Chromohalobacter salexigens (strain DSM 3043 /
ATCC BAA-138 / NCIMB 13768) GN=bioB PE=3 SV=1
Length = 370
Score = 33.9 bits (76), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 2/49 (4%)
Query: 162 NPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIK 210
NPQ L+DK GL P D HA +RDDE H I+R +
Sbjct: 313 NPQVERDRALFDKLGLHPEPSD--PHADDAHRDDEQAEIALAHAIQRQR 359
>sp|A4WBF2|DADA_ENT38 D-amino acid dehydrogenase small subunit OS=Enterobacter sp.
(strain 638) GN=dadA PE=3 SV=1
Length = 432
Score = 33.9 bits (76), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 14/42 (33%), Positives = 25/42 (59%)
Query: 236 QSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARC 277
Q A++ G T+ + PVD+++ E GK+ GV+ G E+ +
Sbjct: 205 QRLAKMCEQAGVTFRYNTPVDKLLSEGGKIYGVKCGDEVIKA 246
>sp|P75499|GLF_MYCPN UDP-galactopyranose mutase OS=Mycoplasma pneumoniae (strain ATCC
29342 / M129) GN=glf PE=3 SV=1
Length = 399
Score = 33.5 bits (75), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42
++D IVLG G+ +LS +L+ GK VL +++ GG
Sbjct: 13 NKFDFIVLGAGISGIVLSHVLAQHGKSVLLLEKRNQLGGN 52
>sp|A4JCJ3|DADA_BURVG D-amino acid dehydrogenase small subunit OS=Burkholderia
vietnamiensis (strain G4 / LMG 22486) GN=dadA PE=3 SV=1
Length = 428
Score = 33.1 bits (74), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 238 FARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQ-VYCDPSYVQDRVKKLNQ 296
A L+ G + + P+D + I GK+ GV+ G+E R V SY + V KL +
Sbjct: 207 LAALAESLGVKFRYNTPIDALAIAGGKIAGVQCGSETVRADAYVVALGSYSTNFVSKLMK 266
Query: 297 V 297
+
Sbjct: 267 I 267
>sp|P59420|SYA_BUCBP Alanine--tRNA ligase OS=Buchnera aphidicola subsp. Baizongia
pistaciae (strain Bp) GN=alaS PE=3 SV=1
Length = 880
Score = 33.1 bits (74), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 7/62 (11%)
Query: 36 NKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRD-------WNVDLIPKFLMANGSLV 88
N + GE P E+F +G+TLP + G + WN+ I ++NG L+
Sbjct: 169 NFWQMGEIGPCGPCTEIFYDYGNTLPGTIPGNNGCNVPRFVEIWNIVFIQFNKLSNGKLI 228
Query: 89 KL 90
KL
Sbjct: 229 KL 230
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.137 0.401
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 172,106,574
Number of Sequences: 539616
Number of extensions: 7598190
Number of successful extensions: 18352
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 18265
Number of HSP's gapped (non-prelim): 80
length of query: 441
length of database: 191,569,459
effective HSP length: 121
effective length of query: 320
effective length of database: 126,275,923
effective search space: 40408295360
effective search space used: 40408295360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)