Query psy2620
Match_columns 441
No_of_seqs 315 out of 2862
Neff 9.4
Searched_HMMs 46136
Date Fri Aug 16 20:51:08 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2620.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/2620hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00996 GDI: GDP dissociation 100.0 2.3E-78 5.1E-83 588.3 40.4 434 1-436 1-437 (438)
2 PTZ00363 rab-GDP dissociation 100.0 9E-73 1.9E-77 557.5 46.8 437 1-439 1-441 (443)
3 KOG1439|consensus 100.0 6.5E-70 1.4E-74 502.3 34.0 434 1-436 1-437 (440)
4 COG5044 MRS6 RAB proteins gera 100.0 3E-56 6.4E-61 406.8 30.1 424 1-434 1-432 (434)
5 KOG4405|consensus 100.0 1.3E-50 2.7E-55 373.0 21.0 422 3-433 7-503 (547)
6 COG1233 Phytoene dehydrogenase 100.0 1.3E-29 2.8E-34 256.4 20.0 360 3-426 2-399 (487)
7 TIGR02734 crtI_fam phytoene de 100.0 1.8E-28 4E-33 250.8 26.8 361 7-426 1-408 (502)
8 KOG4254|consensus 100.0 3.4E-29 7.4E-34 235.0 14.8 183 222-426 254-460 (561)
9 TIGR02730 carot_isom carotene 100.0 2.2E-27 4.8E-32 241.9 26.4 357 5-426 1-409 (493)
10 TIGR02733 desat_CrtD C-3',4' d 99.9 1.1E-25 2.4E-30 229.6 28.2 348 5-426 2-409 (492)
11 PRK07233 hypothetical protein; 99.9 1.3E-20 2.8E-25 189.6 31.9 250 6-285 1-251 (434)
12 COG1232 HemY Protoporphyrinoge 99.9 1.1E-20 2.4E-25 184.8 30.1 330 6-374 2-370 (444)
13 TIGR00562 proto_IX_ox protopor 99.9 9.8E-20 2.1E-24 184.7 33.2 377 4-424 2-456 (462)
14 PRK12416 protoporphyrinogen ox 99.9 7.1E-20 1.5E-24 185.7 32.0 281 6-324 3-328 (463)
15 PRK07208 hypothetical protein; 99.9 5.7E-20 1.2E-24 187.2 30.6 249 1-285 1-277 (479)
16 PLN02576 protoporphyrinogen ox 99.9 1.2E-18 2.7E-23 178.2 34.2 267 3-307 11-331 (496)
17 PRK11883 protoporphyrinogen ox 99.9 5.1E-19 1.1E-23 179.0 30.8 327 6-373 2-376 (451)
18 PLN02612 phytoene desaturase 99.8 2.2E-17 4.7E-22 170.2 25.9 275 4-308 93-403 (567)
19 TIGR02731 phytoene_desat phyto 99.8 1.9E-17 4.2E-22 167.4 24.3 272 6-308 1-313 (453)
20 TIGR02732 zeta_caro_desat caro 99.8 4.3E-17 9.4E-22 164.8 24.4 253 6-286 1-282 (474)
21 PLN02487 zeta-carotene desatur 99.8 5.1E-17 1.1E-21 165.7 23.8 255 5-286 76-358 (569)
22 PLN02268 probable polyamine ox 99.7 8.6E-16 1.9E-20 154.6 16.9 254 5-311 1-293 (435)
23 PRK13977 myosin-cross-reactive 99.7 1.3E-14 2.9E-19 145.5 22.1 239 4-286 22-291 (576)
24 PLN02529 lysine-specific histo 99.6 2.2E-14 4.8E-19 149.5 21.7 260 4-311 160-448 (738)
25 TIGR03467 HpnE squalene-associ 99.6 1.6E-14 3.5E-19 144.7 19.8 259 18-308 1-287 (419)
26 PLN02568 polyamine oxidase 99.6 3.6E-14 7.7E-19 144.9 21.9 77 1-98 2-85 (539)
27 PLN02328 lysine-specific histo 99.6 7.8E-14 1.7E-18 146.1 24.6 261 4-311 238-528 (808)
28 PLN02676 polyamine oxidase 99.6 6.9E-14 1.5E-18 141.7 20.9 266 3-312 25-328 (487)
29 COG2907 Predicted NAD/FAD-bind 99.6 9.3E-14 2E-18 127.7 18.4 249 5-284 9-269 (447)
30 PLN03000 amine oxidase 99.6 3E-13 6.4E-18 141.7 24.2 262 4-312 184-473 (881)
31 COG1231 Monoamine oxidase [Ami 99.6 1.6E-13 3.5E-18 131.7 18.0 45 3-47 6-50 (450)
32 KOG0029|consensus 99.5 4.9E-13 1.1E-17 134.4 13.9 75 3-97 14-90 (501)
33 PF01266 DAO: FAD dependent ox 99.4 6.8E-13 1.5E-17 129.7 12.4 68 223-290 135-205 (358)
34 KOG1276|consensus 99.4 1.4E-10 3E-15 109.9 25.7 223 5-260 12-277 (491)
35 PRK11728 hydroxyglutarate oxid 99.4 2.6E-12 5.7E-17 127.5 13.9 66 224-290 138-206 (393)
36 COG2081 Predicted flavoprotein 99.4 6.1E-12 1.3E-16 119.1 15.4 65 223-288 101-169 (408)
37 KOG2820|consensus 99.4 9.8E-11 2.1E-15 107.7 21.9 67 225-291 143-215 (399)
38 PF03486 HI0933_like: HI0933-l 99.4 2.3E-12 5E-17 126.8 11.4 63 223-285 99-163 (409)
39 COG0579 Predicted dehydrogenas 99.4 4.3E-12 9.4E-17 123.8 11.8 65 224-288 142-211 (429)
40 COG0578 GlpA Glycerol-3-phosph 99.3 8.3E-12 1.8E-16 124.2 13.0 68 223-291 153-228 (532)
41 PRK11101 glpA sn-glycerol-3-ph 99.3 1.4E-11 3E-16 127.0 14.1 61 231-291 148-214 (546)
42 PRK08274 tricarballylate dehyd 99.3 3E-11 6.5E-16 122.7 15.2 60 228-287 127-191 (466)
43 PF01593 Amino_oxidase: Flavin 99.3 2.1E-12 4.4E-17 129.5 6.6 74 14-106 1-75 (450)
44 TIGR03329 Phn_aa_oxid putative 99.3 8.3E-11 1.8E-15 119.1 17.6 66 223-290 171-239 (460)
45 TIGR01377 soxA_mon sarcosine o 99.3 8.4E-11 1.8E-15 116.3 17.0 65 225-290 135-202 (380)
46 PRK12409 D-amino acid dehydrog 99.3 1.4E-11 3.1E-16 123.0 11.4 68 223-290 185-260 (410)
47 PRK00711 D-amino acid dehydrog 99.3 1.5E-10 3.4E-15 115.8 17.7 67 224-290 190-259 (416)
48 PF13450 NAD_binding_8: NAD(P) 99.3 5.8E-12 1.3E-16 91.4 5.3 39 9-47 1-39 (68)
49 KOG0685|consensus 99.3 8.1E-11 1.8E-15 113.3 14.2 72 3-95 20-94 (498)
50 PLN02976 amine oxidase 99.3 1.1E-10 2.3E-15 126.4 16.6 44 4-47 693-736 (1713)
51 COG3349 Uncharacterized conser 99.2 4.2E-11 9.2E-16 117.4 11.4 240 6-273 2-260 (485)
52 TIGR00031 UDP-GALP_mutase UDP- 99.2 2.1E-10 4.6E-15 111.6 15.4 236 5-288 2-246 (377)
53 PRK11259 solA N-methyltryptoph 99.2 2.5E-10 5.3E-15 112.8 16.0 59 231-290 148-206 (376)
54 PRK10157 putative oxidoreducta 99.2 2.1E-10 4.5E-15 115.0 14.8 55 233-287 109-163 (428)
55 PRK12266 glpD glycerol-3-phosp 99.2 1.2E-10 2.7E-15 118.9 12.8 60 231-291 154-219 (508)
56 PRK13369 glycerol-3-phosphate 99.2 2E-10 4.3E-15 117.5 13.9 60 231-291 154-218 (502)
57 PRK10015 oxidoreductase; Provi 99.2 3.6E-10 7.8E-15 113.2 14.9 54 234-287 110-163 (429)
58 TIGR01373 soxB sarcosine oxida 99.2 1.2E-09 2.5E-14 109.2 17.1 58 232-289 183-241 (407)
59 PRK04176 ribulose-1,5-biphosph 99.1 6.5E-10 1.4E-14 103.2 13.6 40 4-43 25-64 (257)
60 PTZ00383 malate:quinone oxidor 99.1 6E-10 1.3E-14 112.6 14.3 60 231-290 210-275 (497)
61 PRK01747 mnmC bifunctional tRN 99.1 1.3E-09 2.8E-14 115.3 16.0 66 223-290 396-465 (662)
62 COG0665 DadA Glycine/D-amino a 99.1 9E-10 2E-14 109.1 13.7 66 224-290 145-214 (387)
63 TIGR03364 HpnW_proposed FAD de 99.1 7.7E-10 1.7E-14 108.8 13.1 61 225-290 135-199 (365)
64 TIGR00292 thiazole biosynthesi 99.1 2.1E-09 4.6E-14 99.4 14.9 40 4-43 21-60 (254)
65 PRK06481 fumarate reductase fl 99.1 1.1E-09 2.4E-14 112.0 13.7 56 232-287 190-250 (506)
66 PLN02464 glycerol-3-phosphate 99.1 1.1E-09 2.4E-14 114.3 13.2 61 231-291 231-299 (627)
67 PRK08773 2-octaprenyl-3-methyl 99.1 3.7E-09 8E-14 105.0 16.1 56 232-288 113-169 (392)
68 PF00890 FAD_binding_2: FAD bi 99.1 9.3E-10 2E-14 110.3 11.6 59 230-288 139-203 (417)
69 PRK12845 3-ketosteroid-delta-1 99.1 3.4E-09 7.5E-14 109.3 15.5 59 228-287 214-277 (564)
70 PRK07121 hypothetical protein; 99.0 4.5E-09 9.8E-14 107.4 16.1 59 230-288 175-239 (492)
71 PRK05257 malate:quinone oxidor 99.0 4.7E-09 1E-13 106.5 15.5 67 224-290 172-248 (494)
72 TIGR01320 mal_quin_oxido malat 99.0 5.2E-09 1.1E-13 106.0 15.2 68 224-291 167-243 (483)
73 PF00732 GMC_oxred_N: GMC oxid 99.0 1.2E-09 2.6E-14 104.2 8.7 63 226-288 186-258 (296)
74 COG0644 FixC Dehydrogenases (f 99.0 5.5E-09 1.2E-13 103.8 13.7 43 3-45 2-44 (396)
75 PRK13339 malate:quinone oxidor 99.0 7.1E-09 1.5E-13 104.5 13.8 67 223-290 172-249 (497)
76 PRK06175 L-aspartate oxidase; 99.0 1.3E-08 2.9E-13 102.0 15.6 56 232-287 128-188 (433)
77 PRK02106 choline dehydrogenase 98.9 2.1E-08 4.5E-13 104.2 16.0 38 1-38 2-40 (560)
78 PRK06847 hypothetical protein; 98.9 1.2E-08 2.6E-13 100.7 13.5 56 232-288 107-163 (375)
79 PRK07190 hypothetical protein; 98.9 1.2E-08 2.5E-13 103.8 13.6 55 234-288 111-165 (487)
80 COG0562 Glf UDP-galactopyranos 98.9 1.2E-08 2.5E-13 93.7 12.1 119 4-147 1-122 (374)
81 PRK08958 sdhA succinate dehydr 98.9 1.9E-08 4.2E-13 104.5 15.3 55 232-286 143-204 (588)
82 PRK12844 3-ketosteroid-delta-1 98.9 1.9E-08 4.1E-13 104.1 15.1 56 232-287 208-268 (557)
83 PRK06185 hypothetical protein; 98.9 2.7E-08 5.8E-13 99.4 15.7 56 233-288 109-169 (407)
84 PRK06134 putative FAD-binding 98.9 8.6E-08 1.9E-12 99.7 20.0 59 231-289 216-279 (581)
85 PTZ00139 Succinate dehydrogena 98.9 3.5E-08 7.5E-13 103.1 17.0 55 232-286 166-227 (617)
86 PRK12837 3-ketosteroid-delta-1 98.9 7.2E-08 1.6E-12 98.9 17.7 56 232-287 173-234 (513)
87 PRK06452 sdhA succinate dehydr 98.9 3.9E-08 8.5E-13 101.9 15.7 55 232-286 136-196 (566)
88 PRK08850 2-octaprenyl-6-methox 98.9 5.2E-08 1.1E-12 97.2 16.1 36 1-36 1-36 (405)
89 TIGR01813 flavo_cyto_c flavocy 98.9 1.9E-08 4E-13 101.5 13.0 57 232-288 130-192 (439)
90 PRK05714 2-octaprenyl-3-methyl 98.9 1.8E-08 3.9E-13 100.6 12.7 55 233-288 113-168 (405)
91 PRK09126 hypothetical protein; 98.9 2.4E-08 5.2E-13 99.2 13.5 38 1-39 1-38 (392)
92 PRK12834 putative FAD-binding 98.9 6.5E-08 1.4E-12 100.2 16.9 44 1-44 1-46 (549)
93 KOG2844|consensus 98.9 2.3E-08 5E-13 99.7 12.8 60 231-290 186-245 (856)
94 PRK09078 sdhA succinate dehydr 98.9 6E-08 1.3E-12 101.1 16.5 55 232-286 149-210 (598)
95 TIGR01812 sdhA_frdA_Gneg succi 98.9 8.1E-08 1.7E-12 100.0 17.5 56 232-287 129-190 (566)
96 PRK08163 salicylate hydroxylas 98.9 4.4E-08 9.5E-13 97.5 14.5 40 1-40 1-40 (396)
97 COG1635 THI4 Ribulose 1,5-bisp 98.9 1.9E-09 4.2E-14 93.7 3.9 41 4-44 30-70 (262)
98 PRK12839 hypothetical protein; 98.8 5.6E-08 1.2E-12 100.7 15.3 43 2-44 6-48 (572)
99 PRK08013 oxidoreductase; Provi 98.8 2.5E-08 5.5E-13 99.3 12.3 38 1-39 1-38 (400)
100 PLN00128 Succinate dehydrogena 98.8 9.1E-08 2E-12 100.1 16.8 55 232-286 187-248 (635)
101 TIGR01988 Ubi-OHases Ubiquinon 98.8 3.3E-08 7.2E-13 97.9 12.8 56 232-288 106-163 (385)
102 PRK07608 ubiquinone biosynthes 98.8 7.7E-08 1.7E-12 95.4 15.4 55 232-288 111-167 (388)
103 PRK12842 putative succinate de 98.8 1.5E-07 3.4E-12 97.8 18.1 57 232-288 214-275 (574)
104 PRK12843 putative FAD-binding 98.8 1.5E-07 3.3E-12 97.9 17.9 57 232-288 221-282 (578)
105 PRK06184 hypothetical protein; 98.8 3.3E-08 7.1E-13 101.5 12.8 55 234-288 111-168 (502)
106 TIGR00275 flavoprotein, HI0933 98.8 5.1E-08 1.1E-12 96.9 13.7 56 231-287 104-159 (400)
107 PF01946 Thi4: Thi4 family; PD 98.8 2.1E-09 4.6E-14 94.0 3.3 41 4-44 17-57 (230)
108 PRK07494 2-octaprenyl-6-methox 98.8 4.3E-08 9.3E-13 97.3 13.0 56 232-288 111-167 (388)
109 COG0654 UbiH 2-polyprenyl-6-me 98.8 7.6E-08 1.6E-12 95.4 14.7 57 232-288 104-162 (387)
110 PRK08243 4-hydroxybenzoate 3-m 98.8 7.7E-08 1.7E-12 95.6 14.5 35 4-38 2-36 (392)
111 PRK07573 sdhA succinate dehydr 98.8 9.8E-08 2.1E-12 100.1 15.6 51 236-286 174-230 (640)
112 PRK07364 2-octaprenyl-6-methox 98.8 9.3E-08 2E-12 95.7 14.8 38 2-39 16-53 (415)
113 PLN02985 squalene monooxygenas 98.8 1.7E-07 3.6E-12 95.9 16.8 36 3-38 42-77 (514)
114 PRK07057 sdhA succinate dehydr 98.8 1.3E-07 2.9E-12 98.4 16.0 55 232-286 148-209 (591)
115 PRK08401 L-aspartate oxidase; 98.8 1.4E-07 3E-12 95.7 15.8 56 232-288 120-175 (466)
116 PRK05945 sdhA succinate dehydr 98.8 1.2E-07 2.6E-12 98.6 15.6 56 232-287 135-196 (575)
117 PRK07333 2-octaprenyl-6-methox 98.8 5.6E-08 1.2E-12 96.9 12.7 56 232-288 111-167 (403)
118 TIGR02032 GG-red-SF geranylger 98.8 1.4E-07 3.1E-12 89.6 14.8 56 233-288 92-148 (295)
119 PRK07804 L-aspartate oxidase; 98.8 1.5E-07 3.2E-12 97.2 16.0 56 232-287 144-209 (541)
120 PRK05192 tRNA uridine 5-carbox 98.8 6.4E-08 1.4E-12 98.8 12.9 42 1-42 1-43 (618)
121 PRK06834 hypothetical protein; 98.8 5.7E-08 1.2E-12 98.9 12.7 55 233-288 101-156 (488)
122 PRK12835 3-ketosteroid-delta-1 98.8 9E-08 2E-12 99.4 14.0 57 231-287 212-274 (584)
123 TIGR01810 betA choline dehydro 98.8 1.6E-07 3.5E-12 97.0 15.9 57 231-287 192-254 (532)
124 TIGR02485 CobZ_N-term precorri 98.8 9.4E-08 2E-12 96.1 13.5 62 226-287 117-182 (432)
125 TIGR00551 nadB L-aspartate oxi 98.8 2.4E-07 5.1E-12 94.6 16.6 57 232-288 128-189 (488)
126 TIGR01984 UbiH 2-polyprenyl-6- 98.8 5.3E-08 1.1E-12 96.4 11.5 56 232-288 105-162 (382)
127 PRK08205 sdhA succinate dehydr 98.7 2.1E-07 4.6E-12 96.9 15.7 55 232-286 140-204 (583)
128 PRK07803 sdhA succinate dehydr 98.7 3.7E-07 8E-12 95.7 17.0 39 4-42 8-46 (626)
129 PRK06069 sdhA succinate dehydr 98.7 3.4E-07 7.4E-12 95.3 16.6 55 232-286 137-198 (577)
130 TIGR02360 pbenz_hydroxyl 4-hyd 98.7 2.1E-07 4.6E-12 92.3 14.1 35 4-38 2-36 (390)
131 PLN02697 lycopene epsilon cycl 98.7 1.5E-07 3.3E-12 95.8 13.0 57 232-289 192-249 (529)
132 PRK08275 putative oxidoreducta 98.7 1.9E-07 4.1E-12 96.8 14.0 55 232-286 137-198 (554)
133 PRK05329 anaerobic glycerol-3- 98.7 8.2E-07 1.8E-11 88.0 17.8 56 233-288 260-318 (422)
134 PRK07395 L-aspartate oxidase; 98.7 2.7E-07 5.8E-12 95.2 14.8 55 232-286 134-195 (553)
135 PRK06854 adenylylsulfate reduc 98.7 2E-07 4.4E-12 97.3 13.9 56 232-287 132-194 (608)
136 TIGR03378 glycerol3P_GlpB glyc 98.7 1.8E-07 3.9E-12 91.7 12.3 61 231-291 262-326 (419)
137 PRK08020 ubiF 2-octaprenyl-3-m 98.7 2.9E-07 6.2E-12 91.5 14.1 55 233-288 113-169 (391)
138 PRK06263 sdhA succinate dehydr 98.7 3.4E-07 7.4E-12 94.7 15.0 56 232-287 134-196 (543)
139 PRK08071 L-aspartate oxidase; 98.7 3.7E-07 8.1E-12 93.5 15.0 55 232-287 130-189 (510)
140 PRK08626 fumarate reductase fl 98.7 1.7E-07 3.7E-12 98.5 12.4 56 231-286 157-218 (657)
141 PRK08641 sdhA succinate dehydr 98.7 8E-07 1.7E-11 92.6 17.1 40 4-43 3-42 (589)
142 PRK07236 hypothetical protein; 98.6 4.9E-07 1.1E-11 89.6 14.4 35 4-38 6-40 (386)
143 PF06100 Strep_67kDa_ant: Stre 98.6 1.9E-06 4.1E-11 84.8 17.6 44 4-47 2-49 (500)
144 PRK07512 L-aspartate oxidase; 98.6 6E-07 1.3E-11 92.1 14.4 56 231-286 135-195 (513)
145 PRK06183 mhpA 3-(3-hydroxyphen 98.6 3.9E-07 8.5E-12 94.3 12.9 37 4-40 10-46 (538)
146 PRK08244 hypothetical protein; 98.6 3.1E-07 6.7E-12 94.1 12.0 36 4-39 2-37 (493)
147 PTZ00306 NADH-dependent fumara 98.6 4E-07 8.6E-12 101.7 13.7 41 4-44 409-449 (1167)
148 PRK07588 hypothetical protein; 98.6 4.5E-07 9.7E-12 90.1 12.7 33 6-38 2-34 (391)
149 PRK09231 fumarate reductase fl 98.6 1E-06 2.2E-11 91.6 15.1 55 232-286 133-194 (582)
150 COG3380 Predicted NAD/FAD-depe 98.6 8.2E-08 1.8E-12 86.2 5.9 43 5-47 2-44 (331)
151 KOG1298|consensus 98.6 1.4E-06 3.1E-11 81.9 14.3 34 3-36 44-77 (509)
152 COG2303 BetA Choline dehydroge 98.6 6.2E-07 1.3E-11 92.3 13.2 37 1-37 4-40 (542)
153 PLN02815 L-aspartate oxidase 98.6 9.9E-07 2.1E-11 91.6 14.2 39 4-43 29-67 (594)
154 TIGR01176 fum_red_Fp fumarate 98.6 2.1E-06 4.5E-11 89.2 16.3 55 232-286 132-193 (580)
155 PF01134 GIDA: Glucose inhibit 98.5 1.7E-07 3.7E-12 90.8 7.6 50 237-286 100-150 (392)
156 PRK05868 hypothetical protein; 98.5 1.3E-06 2.7E-11 86.2 13.1 35 5-39 2-36 (372)
157 COG3075 GlpB Anaerobic glycero 98.5 3.4E-06 7.3E-11 78.0 14.4 58 232-289 258-319 (421)
158 PRK09077 L-aspartate oxidase; 98.5 2.8E-06 6E-11 87.7 15.7 56 232-287 138-206 (536)
159 KOG0042|consensus 98.5 1.2E-06 2.6E-11 85.8 11.6 69 224-292 214-291 (680)
160 PRK06475 salicylate hydroxylas 98.5 1.7E-06 3.8E-11 86.1 12.7 35 5-39 3-37 (400)
161 PRK05249 soluble pyridine nucl 98.5 1.5E-07 3.2E-12 95.6 4.8 57 232-289 216-273 (461)
162 PLN02172 flavin-containing mon 98.5 1.6E-07 3.4E-12 94.7 4.9 44 2-45 8-51 (461)
163 COG2072 TrkA Predicted flavopr 98.5 2.8E-07 6E-12 92.5 6.6 55 2-61 6-61 (443)
164 PRK06116 glutathione reductase 98.5 1.3E-07 2.9E-12 95.6 4.3 43 1-44 1-43 (450)
165 PRK06467 dihydrolipoamide dehy 98.4 1.5E-07 3.3E-12 95.6 4.7 44 1-44 1-44 (471)
166 PRK06996 hypothetical protein; 98.4 2.5E-06 5.4E-11 85.0 13.0 53 233-286 116-172 (398)
167 TIGR01811 sdhA_Bsu succinate d 98.4 3.9E-06 8.4E-11 87.6 14.7 35 7-41 1-35 (603)
168 PRK06370 mercuric reductase; V 98.4 2.1E-07 4.6E-12 94.5 4.8 43 1-44 2-44 (463)
169 PRK05976 dihydrolipoamide dehy 98.4 2.7E-07 5.8E-12 94.0 4.8 44 1-45 1-44 (472)
170 PRK06115 dihydrolipoamide dehy 98.4 2.4E-07 5.1E-12 94.1 4.4 43 1-44 1-43 (466)
171 TIGR02061 aprA adenosine phosp 98.4 7.2E-06 1.6E-10 85.3 15.3 55 233-287 127-190 (614)
172 PRK08010 pyridine nucleotide-d 98.4 2.6E-07 5.7E-12 93.2 4.6 57 232-289 199-255 (441)
173 PF05834 Lycopene_cycl: Lycope 98.4 4.8E-06 1E-10 82.1 13.2 34 6-39 1-36 (374)
174 PRK07818 dihydrolipoamide dehy 98.4 3.4E-07 7.4E-12 93.0 4.9 43 1-44 1-43 (466)
175 PF01494 FAD_binding_3: FAD bi 98.4 2.7E-07 5.8E-12 90.0 3.8 56 233-288 112-172 (356)
176 PF12831 FAD_oxidored: FAD dep 98.3 3.3E-07 7.1E-12 91.9 4.2 40 6-45 1-40 (428)
177 PRK13800 putative oxidoreducta 98.3 1.2E-05 2.6E-10 87.9 16.6 35 4-38 13-47 (897)
178 PRK07251 pyridine nucleotide-d 98.3 3.9E-07 8.4E-12 91.9 4.6 57 232-289 198-254 (438)
179 PRK06327 dihydrolipoamide dehy 98.3 4.2E-07 9.1E-12 92.6 4.8 45 1-45 1-51 (475)
180 TIGR03143 AhpF_homolog putativ 98.3 4.4E-07 9.5E-12 94.0 4.7 43 1-44 1-43 (555)
181 PRK06292 dihydrolipoamide dehy 98.3 5.6E-07 1.2E-11 91.4 4.6 41 3-44 2-42 (460)
182 PLN02785 Protein HOTHEAD 98.3 8.2E-06 1.8E-10 84.7 12.9 35 3-38 54-88 (587)
183 TIGR01350 lipoamide_DH dihydro 98.3 6.3E-07 1.4E-11 91.0 4.6 56 232-288 211-269 (461)
184 TIGR01424 gluta_reduc_2 glutat 98.3 6.3E-07 1.4E-11 90.5 4.2 57 232-289 207-264 (446)
185 PRK06416 dihydrolipoamide dehy 98.3 7.1E-07 1.5E-11 90.7 4.6 43 2-45 2-44 (462)
186 TIGR00136 gidA glucose-inhibit 98.3 1.1E-05 2.4E-10 82.6 12.8 55 233-288 97-154 (617)
187 TIGR01421 gluta_reduc_1 glutat 98.3 7.1E-07 1.5E-11 90.2 4.3 58 232-289 207-266 (450)
188 COG2509 Uncharacterized FAD-de 98.3 2E-05 4.3E-10 76.3 13.7 56 231-286 172-228 (486)
189 COG0492 TrxB Thioredoxin reduc 98.2 5.9E-07 1.3E-11 85.1 3.3 44 3-46 2-45 (305)
190 PLN00093 geranylgeranyl diphos 98.2 7.4E-07 1.6E-11 89.7 4.1 35 3-37 38-72 (450)
191 KOG2665|consensus 98.2 2E-06 4.4E-11 78.9 6.4 45 3-47 47-93 (453)
192 PRK07045 putative monooxygenas 98.2 8.4E-07 1.8E-11 88.0 4.3 37 3-39 4-40 (388)
193 KOG2404|consensus 98.2 1.5E-05 3.2E-10 73.6 11.8 40 5-44 10-49 (477)
194 PRK08849 2-octaprenyl-3-methyl 98.2 8.7E-07 1.9E-11 87.8 4.4 36 1-37 1-36 (384)
195 TIGR02023 BchP-ChlP geranylger 98.2 8.8E-07 1.9E-11 87.9 4.2 32 5-36 1-32 (388)
196 PLN02661 Putative thiazole syn 98.2 9.8E-07 2.1E-11 84.3 4.1 40 4-43 92-132 (357)
197 PF13738 Pyr_redox_3: Pyridine 98.2 7.8E-07 1.7E-11 79.7 3.3 39 8-46 1-40 (203)
198 PTZ00052 thioredoxin reductase 98.2 1.3E-06 2.8E-11 89.4 4.6 57 232-289 222-279 (499)
199 KOG1399|consensus 98.2 1.2E-06 2.6E-11 87.0 4.1 44 3-46 5-48 (448)
200 COG1249 Lpd Pyruvate/2-oxoglut 98.2 1.4E-06 3E-11 86.9 4.5 45 1-45 1-45 (454)
201 TIGR02028 ChlP geranylgeranyl 98.2 1.4E-06 3E-11 86.6 4.5 36 5-40 1-36 (398)
202 TIGR01292 TRX_reduct thioredox 98.2 1.3E-06 2.9E-11 83.2 4.2 40 5-45 1-40 (300)
203 KOG2852|consensus 98.2 0.00012 2.6E-09 66.8 16.2 44 3-46 9-58 (380)
204 PRK13748 putative mercuric red 98.2 1.4E-06 3.1E-11 90.7 4.5 57 232-289 310-366 (561)
205 PRK14694 putative mercuric red 98.1 1.8E-06 3.9E-11 87.8 4.5 57 232-289 218-274 (468)
206 TIGR02053 MerA mercuric reduct 98.1 2E-06 4.3E-11 87.4 4.4 39 5-44 1-39 (463)
207 PRK05732 2-octaprenyl-6-methox 98.1 2.1E-06 4.5E-11 85.4 4.4 35 3-37 2-39 (395)
208 TIGR03315 Se_ygfK putative sel 98.1 2.2E-06 4.8E-11 92.7 4.7 41 4-44 537-577 (1012)
209 TIGR01790 carotene-cycl lycope 98.1 2.5E-06 5.3E-11 84.7 4.5 37 6-42 1-37 (388)
210 PTZ00058 glutathione reductase 98.1 2.8E-06 6E-11 87.6 4.5 42 3-45 47-88 (561)
211 PF06039 Mqo: Malate:quinone o 98.1 0.0003 6.5E-09 68.9 18.0 62 225-286 170-242 (488)
212 PRK12779 putative bifunctional 98.1 2.8E-06 6E-11 92.6 4.6 41 4-44 306-346 (944)
213 PRK06617 2-octaprenyl-6-methox 98.1 2.8E-06 6E-11 83.9 4.2 56 232-288 104-160 (374)
214 TIGR01989 COQ6 Ubiquinone bios 98.1 3.4E-06 7.3E-11 85.1 4.5 34 5-38 1-38 (437)
215 COG3573 Predicted oxidoreducta 98.1 4E-06 8.7E-11 77.6 4.5 41 3-43 4-46 (552)
216 PF04820 Trp_halogenase: Trypt 98.1 2.8E-05 6.1E-10 78.5 10.9 54 232-286 154-209 (454)
217 COG1148 HdrA Heterodisulfide r 98.1 3.1E-06 6.7E-11 82.0 3.7 43 5-47 125-167 (622)
218 KOG2853|consensus 98.0 5.7E-05 1.2E-09 70.3 11.7 41 3-43 85-129 (509)
219 PRK12831 putative oxidoreducta 98.0 4E-06 8.8E-11 84.9 4.7 42 3-44 139-180 (464)
220 PLN02463 lycopene beta cyclase 98.0 3.6E-06 7.8E-11 84.4 4.2 54 233-288 115-169 (447)
221 PRK07843 3-ketosteroid-delta-1 98.0 4E-06 8.7E-11 86.9 4.7 56 232-287 208-268 (557)
222 PRK14727 putative mercuric red 98.0 3.6E-06 7.7E-11 85.8 4.3 42 4-45 16-57 (479)
223 PRK06126 hypothetical protein; 98.0 3.8E-06 8.3E-11 87.2 4.4 36 3-38 6-41 (545)
224 PRK08132 FAD-dependent oxidore 98.0 4.6E-06 1E-10 86.5 4.9 37 3-39 22-58 (547)
225 PRK11445 putative oxidoreducta 98.0 4.3E-06 9.3E-11 81.8 4.2 34 5-39 2-35 (351)
226 PTZ00367 squalene epoxidase; P 98.0 4.3E-06 9.4E-11 86.2 4.3 35 3-37 32-66 (567)
227 PRK06753 hypothetical protein; 98.0 4.1E-06 8.9E-11 82.6 3.9 34 6-39 2-35 (373)
228 PRK08294 phenol 2-monooxygenas 98.0 5E-06 1.1E-10 87.3 4.8 38 1-38 29-67 (634)
229 PLN02507 glutathione reductase 98.0 5E-06 1.1E-10 85.0 4.5 57 232-289 244-301 (499)
230 TIGR01423 trypano_reduc trypan 98.0 5.4E-06 1.2E-10 84.3 4.5 58 232-289 231-289 (486)
231 TIGR03197 MnmC_Cterm tRNA U-34 98.0 6.3E-05 1.4E-09 74.4 12.0 66 224-291 124-193 (381)
232 PRK09897 hypothetical protein; 98.0 0.00014 3.1E-09 74.3 14.4 55 232-287 107-165 (534)
233 TIGR03377 glycerol3P_GlpA glyc 98.0 7.1E-05 1.5E-09 77.1 12.2 61 231-291 127-193 (516)
234 PRK09853 putative selenate red 98.0 6.9E-06 1.5E-10 88.7 4.8 41 4-44 539-579 (1019)
235 PF00743 FMO-like: Flavin-bind 98.0 6.4E-06 1.4E-10 84.3 4.1 41 5-45 2-42 (531)
236 KOG2614|consensus 97.9 8.2E-06 1.8E-10 78.1 4.4 36 4-39 2-37 (420)
237 PRK07538 hypothetical protein; 97.9 6.6E-06 1.4E-10 82.3 4.1 34 6-39 2-35 (413)
238 TIGR01372 soxA sarcosine oxida 97.9 7.6E-06 1.6E-10 90.3 4.7 41 4-44 163-203 (985)
239 TIGR01789 lycopene_cycl lycope 97.9 8.2E-06 1.8E-10 80.2 4.4 37 6-42 1-39 (370)
240 PRK10262 thioredoxin reductase 97.9 7.8E-06 1.7E-10 78.9 4.2 42 3-45 5-46 (321)
241 PLN02546 glutathione reductase 97.9 8.2E-06 1.8E-10 84.2 4.6 42 4-45 79-129 (558)
242 PRK09564 coenzyme A disulfide 97.9 0.00017 3.6E-09 73.0 14.0 57 232-289 191-247 (444)
243 KOG2415|consensus 97.9 8.1E-06 1.8E-10 77.7 4.1 44 3-46 75-124 (621)
244 PRK15317 alkyl hydroperoxide r 97.9 8.7E-06 1.9E-10 83.8 4.4 39 4-44 211-249 (517)
245 TIGR02462 pyranose_ox pyranose 97.9 9.3E-06 2E-10 82.8 4.5 39 5-43 1-39 (544)
246 PRK12769 putative oxidoreducta 97.9 9.6E-06 2.1E-10 85.9 4.7 41 4-44 327-367 (654)
247 PRK05335 tRNA (uracil-5-)-meth 97.9 1E-05 2.2E-10 79.4 4.3 37 5-41 3-39 (436)
248 PRK12775 putative trifunctiona 97.9 9.1E-06 2E-10 89.4 4.5 41 4-44 430-470 (1006)
249 TIGR01316 gltA glutamate synth 97.9 1E-05 2.2E-10 81.7 4.5 41 3-43 132-172 (449)
250 PF13454 NAD_binding_9: FAD-NA 97.9 0.00019 4.1E-09 61.4 11.4 31 8-38 1-36 (156)
251 PLN02927 antheraxanthin epoxid 97.9 1.2E-05 2.7E-10 83.6 4.3 35 3-37 80-114 (668)
252 TIGR00137 gid_trmFO tRNA:m(5)U 97.9 1.2E-05 2.6E-10 79.3 4.0 36 6-41 2-37 (433)
253 PRK12810 gltD glutamate syntha 97.9 1.4E-05 3.1E-10 81.3 4.6 41 4-44 143-183 (471)
254 KOG1238|consensus 97.9 0.00044 9.6E-09 70.2 15.0 37 3-39 56-93 (623)
255 PRK12778 putative bifunctional 97.9 1.4E-05 3.1E-10 85.9 4.9 41 4-44 431-471 (752)
256 TIGR03140 AhpF alkyl hydropero 97.8 1.4E-05 3.1E-10 82.1 4.5 39 4-44 212-250 (515)
257 PLN02852 ferredoxin-NADP+ redu 97.8 1.7E-05 3.7E-10 80.1 4.8 42 4-45 26-69 (491)
258 PTZ00153 lipoamide dehydrogena 97.8 1.6E-05 3.5E-10 83.2 4.5 41 4-44 116-157 (659)
259 PRK12814 putative NADPH-depend 97.8 2.1E-05 4.5E-10 83.1 4.6 41 4-44 193-233 (652)
260 TIGR03219 salicylate_mono sali 97.8 2E-05 4.4E-10 78.8 4.3 35 6-40 2-37 (414)
261 PRK11749 dihydropyrimidine deh 97.8 2.6E-05 5.6E-10 79.1 4.8 40 4-43 140-179 (457)
262 TIGR01318 gltD_gamma_fam gluta 97.7 3.1E-05 6.8E-10 78.6 4.7 41 4-44 141-181 (467)
263 TIGR01438 TGR thioredoxin and 97.7 2.9E-05 6.2E-10 79.2 4.4 57 232-289 220-280 (484)
264 COG1053 SdhA Succinate dehydro 97.7 2.8E-05 6.1E-10 79.8 4.3 44 2-45 4-47 (562)
265 PRK12809 putative oxidoreducta 97.7 3E-05 6.5E-10 81.8 4.6 41 4-44 310-350 (639)
266 PF07992 Pyr_redox_2: Pyridine 97.7 4.1E-05 9E-10 68.3 4.0 32 6-37 1-32 (201)
267 PTZ00188 adrenodoxin reductase 97.7 4.8E-05 1E-09 76.0 4.6 42 4-45 39-81 (506)
268 PF00070 Pyr_redox: Pyridine n 97.6 7.2E-05 1.6E-09 56.1 4.4 35 6-40 1-35 (80)
269 KOG1335|consensus 97.6 5.4E-05 1.2E-09 71.6 4.0 42 3-44 38-79 (506)
270 PRK06567 putative bifunctional 97.6 5.7E-05 1.2E-09 80.8 4.6 39 4-42 383-421 (1028)
271 PRK06912 acoL dihydrolipoamide 97.6 5.5E-05 1.2E-09 76.8 4.2 57 232-289 211-269 (458)
272 TIGR01317 GOGAT_sm_gam glutama 97.6 6.6E-05 1.4E-09 76.5 4.6 40 5-44 144-183 (485)
273 COG0493 GltD NADPH-dependent g 97.6 5.5E-05 1.2E-09 75.7 3.8 41 5-45 124-164 (457)
274 PRK12770 putative glutamate sy 97.5 8.4E-05 1.8E-09 72.7 4.7 41 4-44 18-58 (352)
275 PRK12771 putative glutamate sy 97.5 7.2E-05 1.6E-09 77.9 4.3 40 5-44 138-177 (564)
276 COG0445 GidA Flavin-dependent 97.5 8.3E-05 1.8E-09 73.7 3.7 36 1-36 1-36 (621)
277 KOG0399|consensus 97.5 8.8E-05 1.9E-09 78.5 3.9 41 4-44 1785-1825(2142)
278 TIGR03452 mycothione_red mycot 97.5 0.00012 2.7E-09 74.0 4.7 55 233-289 211-266 (452)
279 PRK07846 mycothione reductase; 97.5 0.00013 2.8E-09 73.8 4.7 55 233-289 208-263 (451)
280 TIGR02352 thiamin_ThiO glycine 97.4 0.00042 9.1E-09 67.1 8.0 69 223-291 125-196 (337)
281 PRK07845 flavoprotein disulfid 97.4 0.00013 2.9E-09 74.1 4.5 57 232-289 218-275 (466)
282 PRK13984 putative oxidoreducta 97.4 0.00014 3E-09 76.5 4.7 41 4-44 283-323 (604)
283 PRK08255 salicylyl-CoA 5-hydro 97.4 0.00014 3E-09 78.3 4.0 33 6-38 2-36 (765)
284 COG4716 Myosin-crossreactive a 97.2 0.023 5E-07 54.1 16.2 42 5-46 23-68 (587)
285 COG0029 NadB Aspartate oxidase 97.1 0.00063 1.4E-08 67.0 4.8 54 232-285 133-193 (518)
286 KOG2960|consensus 97.0 0.00033 7E-09 61.0 2.0 40 4-43 76-117 (328)
287 PF13434 K_oxygenase: L-lysine 97.0 0.0014 3E-08 63.6 6.5 34 4-37 2-36 (341)
288 KOG2311|consensus 96.9 0.00065 1.4E-08 66.2 3.4 34 3-36 27-60 (679)
289 TIGR02374 nitri_red_nirB nitri 96.9 0.012 2.6E-07 63.7 13.4 56 233-289 183-239 (785)
290 PRK09754 phenylpropionate diox 96.7 0.0015 3.2E-08 65.1 4.4 56 232-289 186-242 (396)
291 PRK05675 sdhA succinate dehydr 96.7 0.024 5.3E-07 59.1 13.3 55 232-286 126-187 (570)
292 PTZ00318 NADH dehydrogenase-li 96.6 0.0023 5.1E-08 64.2 4.7 53 232-289 228-281 (424)
293 PRK13512 coenzyme A disulfide 96.6 0.002 4.2E-08 65.1 4.1 53 232-289 189-242 (438)
294 COG0446 HcaD Uncharacterized N 96.6 0.002 4.3E-08 64.2 3.8 40 5-44 137-176 (415)
295 KOG4716|consensus 96.4 0.0028 6E-08 59.3 3.3 34 3-36 18-51 (503)
296 KOG1800|consensus 96.3 0.0047 1E-07 58.8 4.4 42 4-45 20-63 (468)
297 COG1206 Gid NAD(FAD)-utilizing 96.3 0.004 8.7E-08 58.1 3.8 41 4-44 3-43 (439)
298 COG3634 AhpF Alkyl hydroperoxi 96.1 0.0027 5.8E-08 59.6 1.7 39 3-43 210-248 (520)
299 KOG0405|consensus 96.0 0.0072 1.6E-07 56.9 4.0 43 3-45 19-61 (478)
300 KOG3855|consensus 96.0 0.0074 1.6E-07 58.1 4.1 35 4-38 36-74 (481)
301 PF03721 UDPG_MGDP_dh_N: UDP-g 95.9 0.0073 1.6E-07 53.1 3.5 32 6-37 2-33 (185)
302 KOG0404|consensus 95.8 0.0071 1.5E-07 53.4 2.9 51 5-56 9-63 (322)
303 TIGR03169 Nterm_to_SelD pyridi 95.8 0.01 2.2E-07 58.3 4.4 53 232-289 191-244 (364)
304 PF01210 NAD_Gly3P_dh_N: NAD-d 95.7 0.01 2.2E-07 50.8 3.6 32 6-37 1-32 (157)
305 PRK04965 NADH:flavorubredoxin 95.6 0.014 3E-07 57.7 4.4 57 232-289 183-240 (377)
306 COG1252 Ndh NADH dehydrogenase 95.5 0.015 3.3E-07 57.0 4.4 53 232-289 209-263 (405)
307 COG4529 Uncharacterized protei 95.5 0.015 3.3E-07 57.4 4.3 40 5-44 2-44 (474)
308 PRK09754 phenylpropionate diox 95.3 0.016 3.6E-07 57.6 4.0 38 5-42 145-182 (396)
309 PF02737 3HCDH_N: 3-hydroxyacy 95.3 0.02 4.3E-07 50.1 3.9 32 6-37 1-32 (180)
310 PF02558 ApbA: Ketopantoate re 95.2 0.021 4.6E-07 48.2 3.8 31 7-37 1-31 (151)
311 PRK01438 murD UDP-N-acetylmura 94.9 0.024 5.3E-07 57.9 3.9 34 5-38 17-50 (480)
312 TIGR03862 flavo_PP4765 unchara 94.8 0.18 3.8E-06 49.5 9.4 62 222-286 75-139 (376)
313 PRK14989 nitrite reductase sub 94.8 0.033 7E-07 60.7 4.6 57 233-289 188-246 (847)
314 PRK04965 NADH:flavorubredoxin 94.7 0.033 7.1E-07 55.0 4.2 36 5-40 142-177 (377)
315 PRK02705 murD UDP-N-acetylmura 94.7 0.029 6.2E-07 57.0 3.9 34 6-39 2-35 (459)
316 PRK07251 pyridine nucleotide-d 94.7 0.035 7.5E-07 56.1 4.3 38 5-42 158-195 (438)
317 PRK07530 3-hydroxybutyryl-CoA 94.6 0.039 8.6E-07 52.4 4.3 37 1-37 1-37 (292)
318 PRK05976 dihydrolipoamide dehy 94.6 0.032 7E-07 56.9 3.9 36 5-40 181-216 (472)
319 PRK06129 3-hydroxyacyl-CoA deh 94.5 0.032 7E-07 53.4 3.4 32 6-37 4-35 (308)
320 PRK07819 3-hydroxybutyryl-CoA 94.4 0.04 8.8E-07 52.1 3.9 38 1-38 1-39 (286)
321 TIGR01350 lipoamide_DH dihydro 94.4 0.04 8.7E-07 56.0 4.0 37 5-41 171-207 (461)
322 TIGR02053 MerA mercuric reduct 94.2 0.045 9.8E-07 55.7 3.9 37 5-41 167-203 (463)
323 PRK06370 mercuric reductase; V 94.1 0.053 1.2E-06 55.1 4.2 38 5-42 172-209 (463)
324 PRK06912 acoL dihydrolipoamide 94.1 0.053 1.2E-06 55.0 4.1 36 5-40 171-206 (458)
325 PRK06115 dihydrolipoamide dehy 94.0 0.054 1.2E-06 55.1 4.1 37 5-41 175-211 (466)
326 PRK06467 dihydrolipoamide dehy 94.0 0.053 1.1E-06 55.3 3.9 37 5-41 175-211 (471)
327 TIGR01421 gluta_reduc_1 glutat 94.0 0.052 1.1E-06 54.9 3.9 36 5-40 167-202 (450)
328 PRK07846 mycothione reductase; 93.9 0.058 1.3E-06 54.6 4.1 36 5-40 167-202 (451)
329 PRK06416 dihydrolipoamide dehy 93.9 0.057 1.2E-06 54.9 4.0 37 5-41 173-209 (462)
330 PRK06249 2-dehydropantoate 2-r 93.9 0.063 1.4E-06 51.5 4.1 33 5-37 6-38 (313)
331 COG0569 TrkA K+ transport syst 93.9 0.054 1.2E-06 49.2 3.3 32 6-37 2-33 (225)
332 PRK07818 dihydrolipoamide dehy 93.8 0.062 1.3E-06 54.7 4.0 36 5-40 173-208 (466)
333 PRK13512 coenzyme A disulfide 93.7 0.062 1.3E-06 54.2 3.8 37 5-41 149-185 (438)
334 PRK06292 dihydrolipoamide dehy 93.7 0.069 1.5E-06 54.2 4.2 37 5-41 170-206 (460)
335 TIGR01816 sdhA_forward succina 93.7 0.27 5.9E-06 51.3 8.6 55 232-286 119-179 (565)
336 PRK08229 2-dehydropantoate 2-r 93.7 0.063 1.4E-06 52.2 3.7 31 6-36 4-34 (341)
337 TIGR03385 CoA_CoA_reduc CoA-di 93.7 0.068 1.5E-06 53.7 4.0 35 5-39 138-172 (427)
338 PRK08293 3-hydroxybutyryl-CoA 93.6 0.065 1.4E-06 50.7 3.6 33 5-37 4-36 (287)
339 PRK14106 murD UDP-N-acetylmura 93.6 0.079 1.7E-06 53.7 4.4 34 4-37 5-38 (450)
340 PRK05249 soluble pyridine nucl 93.6 0.071 1.5E-06 54.2 4.0 37 5-41 176-212 (461)
341 PRK09260 3-hydroxybutyryl-CoA 93.6 0.06 1.3E-06 51.0 3.2 32 6-37 3-34 (288)
342 PRK05708 2-dehydropantoate 2-r 93.5 0.067 1.5E-06 51.1 3.5 32 5-36 3-34 (305)
343 PRK06327 dihydrolipoamide dehy 93.4 0.08 1.7E-06 54.0 4.1 37 5-41 184-220 (475)
344 PRK11064 wecC UDP-N-acetyl-D-m 93.4 0.078 1.7E-06 53.0 3.8 36 1-37 1-36 (415)
345 PF13738 Pyr_redox_3: Pyridine 93.3 0.2 4.4E-06 44.4 6.1 55 232-287 82-137 (203)
346 PRK07066 3-hydroxybutyryl-CoA 93.3 0.08 1.7E-06 50.7 3.6 33 5-37 8-40 (321)
347 PRK06522 2-dehydropantoate 2-r 93.3 0.08 1.7E-06 50.4 3.6 31 6-36 2-32 (304)
348 PRK06130 3-hydroxybutyryl-CoA 93.3 0.092 2E-06 50.3 4.0 37 1-37 1-37 (311)
349 COG1004 Ugd Predicted UDP-gluc 93.2 0.079 1.7E-06 51.2 3.4 32 6-37 2-33 (414)
350 COG1249 Lpd Pyruvate/2-oxoglut 93.2 0.091 2E-06 52.8 4.0 36 6-41 175-210 (454)
351 TIGR03452 mycothione_red mycot 93.2 0.09 2E-06 53.3 4.0 36 5-40 170-205 (452)
352 TIGR02374 nitri_red_nirB nitri 93.1 0.086 1.9E-06 57.2 4.0 36 5-40 141-176 (785)
353 PRK14618 NAD(P)H-dependent gly 93.0 0.12 2.5E-06 50.0 4.3 37 1-37 1-37 (328)
354 TIGR03140 AhpF alkyl hydropero 93.0 0.096 2.1E-06 54.0 3.9 35 5-39 353-387 (515)
355 PLN02545 3-hydroxybutyryl-CoA 92.9 0.12 2.7E-06 49.1 4.3 37 1-37 1-37 (295)
356 PRK04148 hypothetical protein; 92.9 0.078 1.7E-06 43.6 2.5 33 5-38 18-50 (134)
357 COG0686 Ald Alanine dehydrogen 92.8 0.083 1.8E-06 49.2 2.8 43 4-46 168-218 (371)
358 KOG3923|consensus 92.8 0.082 1.8E-06 49.0 2.7 32 4-35 3-41 (342)
359 PRK07845 flavoprotein disulfid 92.8 0.12 2.7E-06 52.5 4.4 37 6-42 179-215 (466)
360 PRK12921 2-dehydropantoate 2-r 92.7 0.1 2.3E-06 49.7 3.5 30 6-35 2-31 (305)
361 TIGR01424 gluta_reduc_2 glutat 92.7 0.12 2.5E-06 52.4 4.0 36 5-40 167-202 (446)
362 PRK09564 coenzyme A disulfide 92.6 0.12 2.5E-06 52.3 3.9 36 5-40 150-185 (444)
363 PTZ00153 lipoamide dehydrogena 92.6 0.12 2.7E-06 54.5 4.1 36 6-41 314-349 (659)
364 TIGR01316 gltA glutamate synth 92.6 0.11 2.5E-06 52.5 3.7 34 5-38 273-306 (449)
365 PTZ00058 glutathione reductase 92.5 0.12 2.5E-06 53.8 3.7 36 5-40 238-273 (561)
366 PF01262 AlaDh_PNT_C: Alanine 92.4 0.16 3.4E-06 43.9 3.9 33 5-37 21-53 (168)
367 cd05292 LDH_2 A subgroup of L- 92.4 0.14 3.1E-06 48.9 3.9 32 6-37 2-35 (308)
368 PRK14989 nitrite reductase sub 92.4 0.12 2.7E-06 56.2 3.9 35 6-40 147-181 (847)
369 PRK06035 3-hydroxyacyl-CoA deh 92.3 0.12 2.6E-06 49.0 3.4 33 5-37 4-36 (291)
370 cd01080 NAD_bind_m-THF_DH_Cycl 92.3 0.18 4E-06 43.4 4.2 33 4-36 44-77 (168)
371 PRK05808 3-hydroxybutyryl-CoA 92.3 0.13 2.8E-06 48.5 3.5 33 5-37 4-36 (282)
372 TIGR03143 AhpF_homolog putativ 92.3 0.14 3E-06 53.4 4.0 35 5-39 144-178 (555)
373 PRK10262 thioredoxin reductase 92.1 0.15 3.2E-06 49.1 3.8 35 5-39 147-181 (321)
374 PRK15317 alkyl hydroperoxide r 92.1 0.14 3.1E-06 52.8 3.8 35 5-39 352-386 (517)
375 COG1748 LYS9 Saccharopine dehy 92.0 0.17 3.7E-06 49.5 4.0 32 5-36 2-34 (389)
376 PRK08010 pyridine nucleotide-d 92.0 0.17 3.7E-06 51.1 4.1 36 5-40 159-194 (441)
377 PF13241 NAD_binding_7: Putati 91.9 0.18 3.9E-06 39.6 3.4 34 4-37 7-40 (103)
378 PRK00094 gpsA NAD(P)H-dependen 91.9 0.18 3.8E-06 48.6 4.1 32 6-37 3-34 (325)
379 TIGR03026 NDP-sugDHase nucleot 91.9 0.14 3E-06 51.2 3.4 33 6-38 2-34 (411)
380 PRK12831 putative oxidoreducta 91.8 0.16 3.4E-06 51.7 3.7 34 5-38 282-315 (464)
381 TIGR01470 cysG_Nterm siroheme 91.8 0.2 4.3E-06 44.8 3.9 33 5-37 10-42 (205)
382 PRK12770 putative glutamate sy 91.6 0.16 3.5E-06 49.6 3.3 33 6-38 174-207 (352)
383 PRK07843 3-ketosteroid-delta-1 91.5 0.74 1.6E-05 48.0 8.3 41 3-43 6-46 (557)
384 PRK13748 putative mercuric red 91.5 0.2 4.4E-06 52.3 4.2 33 5-37 271-303 (561)
385 COG3486 IucD Lysine/ornithine 91.4 0.23 5E-06 48.2 4.1 39 1-39 2-41 (436)
386 PLN02546 glutathione reductase 91.3 0.2 4.4E-06 52.0 3.9 37 5-41 253-289 (558)
387 TIGR01763 MalateDH_bact malate 91.3 0.22 4.8E-06 47.5 3.9 32 6-37 3-35 (305)
388 TIGR02354 thiF_fam2 thiamine b 91.3 0.25 5.5E-06 44.0 4.0 33 4-36 21-54 (200)
389 PF13478 XdhC_C: XdhC Rossmann 91.3 0.21 4.5E-06 41.5 3.2 31 7-37 1-31 (136)
390 PRK06719 precorrin-2 dehydroge 91.2 0.3 6.4E-06 41.7 4.2 30 5-34 14-43 (157)
391 PF02254 TrkA_N: TrkA-N domain 91.2 0.28 6.1E-06 39.2 3.9 31 7-37 1-31 (116)
392 TIGR00518 alaDH alanine dehydr 91.0 0.23 5E-06 48.8 3.8 33 5-37 168-200 (370)
393 PRK06718 precorrin-2 dehydroge 91.0 0.29 6.3E-06 43.6 4.2 33 4-36 10-42 (202)
394 PRK14727 putative mercuric red 90.9 0.27 5.8E-06 50.3 4.3 33 5-37 189-221 (479)
395 PRK14620 NAD(P)H-dependent gly 90.8 0.24 5.2E-06 47.8 3.7 32 6-37 2-33 (326)
396 PRK07531 bifunctional 3-hydrox 90.6 0.27 5.8E-06 50.4 4.0 33 5-37 5-37 (495)
397 PF01488 Shikimate_DH: Shikima 90.6 0.34 7.3E-06 40.1 3.9 33 4-36 12-45 (135)
398 PTZ00052 thioredoxin reductase 90.5 0.26 5.7E-06 50.6 3.9 32 5-36 183-214 (499)
399 PLN02353 probable UDP-glucose 90.5 0.26 5.7E-06 49.9 3.8 32 6-37 3-36 (473)
400 KOG2304|consensus 90.5 0.26 5.6E-06 43.8 3.1 38 1-38 8-45 (298)
401 TIGR01438 TGR thioredoxin and 90.5 0.28 6E-06 50.2 4.0 31 6-36 182-212 (484)
402 PRK15116 sulfur acceptor prote 90.4 0.32 6.9E-06 45.3 3.9 34 4-37 30-64 (268)
403 PRK15057 UDP-glucose 6-dehydro 90.1 0.29 6.2E-06 48.4 3.6 31 6-37 2-32 (388)
404 PTZ00082 L-lactate dehydrogena 90.0 0.4 8.8E-06 46.1 4.5 37 3-39 5-42 (321)
405 PRK14619 NAD(P)H-dependent gly 89.8 0.39 8.4E-06 46.0 4.2 33 5-37 5-37 (308)
406 PRK11749 dihydropyrimidine deh 89.7 0.33 7.1E-06 49.3 3.8 34 5-38 274-308 (457)
407 PRK01710 murD UDP-N-acetylmura 89.5 0.36 7.8E-06 49.0 3.9 32 6-37 16-47 (458)
408 COG0771 MurD UDP-N-acetylmuram 89.5 0.35 7.7E-06 48.3 3.6 35 5-39 8-42 (448)
409 cd05291 HicDH_like L-2-hydroxy 89.4 0.41 8.9E-06 45.7 4.0 33 6-38 2-36 (306)
410 PRK07417 arogenate dehydrogena 89.3 0.35 7.6E-06 45.5 3.4 32 6-37 2-33 (279)
411 COG1893 ApbA Ketopantoate redu 89.3 0.3 6.5E-06 46.6 3.0 33 6-38 2-34 (307)
412 PRK02472 murD UDP-N-acetylmura 89.3 0.36 7.8E-06 48.8 3.7 33 5-37 6-38 (447)
413 cd01075 NAD_bind_Leu_Phe_Val_D 89.2 0.46 9.9E-06 42.3 3.9 32 5-36 29-60 (200)
414 PRK09424 pntA NAD(P) transhydr 89.1 0.34 7.5E-06 49.3 3.3 33 5-37 166-198 (509)
415 cd00401 AdoHcyase S-adenosyl-L 89.1 0.42 9.1E-06 47.4 3.8 33 5-37 203-235 (413)
416 PRK04308 murD UDP-N-acetylmura 89.0 0.45 9.8E-06 48.1 4.2 35 5-39 6-40 (445)
417 TIGR01915 npdG NADPH-dependent 88.9 0.44 9.5E-06 43.1 3.6 32 6-37 2-34 (219)
418 cd01339 LDH-like_MDH L-lactate 88.9 0.39 8.5E-06 45.7 3.5 31 7-37 1-32 (300)
419 PRK04690 murD UDP-N-acetylmura 88.8 0.41 8.9E-06 48.7 3.7 34 5-38 9-42 (468)
420 TIGR02279 PaaC-3OHAcCoADH 3-hy 88.8 0.38 8.2E-06 49.3 3.4 33 5-37 6-38 (503)
421 TIGR02964 xanthine_xdhC xanthi 88.7 0.62 1.4E-05 42.9 4.5 35 4-38 100-134 (246)
422 PRK07688 thiamine/molybdopteri 88.7 0.52 1.1E-05 45.7 4.1 33 4-36 24-57 (339)
423 KOG2755|consensus 88.6 0.27 5.8E-06 44.8 1.9 34 7-40 2-37 (334)
424 PF03446 NAD_binding_2: NAD bi 88.6 0.51 1.1E-05 40.5 3.6 32 6-37 3-34 (163)
425 PTZ00318 NADH dehydrogenase-li 88.5 0.48 1E-05 47.6 4.0 36 6-41 175-224 (424)
426 PRK03369 murD UDP-N-acetylmura 88.5 0.46 1E-05 48.6 3.8 32 5-36 13-44 (488)
427 PRK00066 ldh L-lactate dehydro 88.4 0.64 1.4E-05 44.6 4.6 34 4-37 6-41 (315)
428 PF07156 Prenylcys_lyase: Pren 88.3 1.9 4E-05 42.3 7.7 109 165-286 69-185 (368)
429 PRK06116 glutathione reductase 88.0 2 4.4E-05 43.4 8.1 57 232-288 208-265 (450)
430 PRK12778 putative bifunctional 88.0 0.45 9.8E-06 51.6 3.6 34 5-38 571-605 (752)
431 PRK06223 malate dehydrogenase; 87.9 0.58 1.3E-05 44.7 4.0 34 5-38 3-37 (307)
432 PRK11730 fadB multifunctional 87.9 0.44 9.4E-06 51.2 3.3 32 6-37 315-346 (715)
433 PF00899 ThiF: ThiF family; I 87.9 0.51 1.1E-05 39.0 3.1 32 4-35 2-34 (135)
434 PF03853 YjeF_N: YjeF-related 87.8 0.58 1.3E-05 40.4 3.5 26 7-32 29-57 (169)
435 cd05191 NAD_bind_amino_acid_DH 87.7 0.84 1.8E-05 34.4 3.9 32 4-35 23-55 (86)
436 PRK12475 thiamine/molybdopteri 87.6 0.65 1.4E-05 45.0 4.1 34 4-37 24-58 (338)
437 PRK08268 3-hydroxy-acyl-CoA de 87.6 0.65 1.4E-05 47.7 4.3 34 5-38 8-41 (507)
438 KOG3851|consensus 87.3 0.47 1E-05 44.6 2.7 57 229-285 233-293 (446)
439 TIGR01505 tartro_sem_red 2-hyd 87.3 0.58 1.3E-05 44.3 3.5 32 6-37 1-32 (291)
440 PRK03806 murD UDP-N-acetylmura 87.2 0.67 1.5E-05 46.7 4.1 33 5-37 7-39 (438)
441 PRK03803 murD UDP-N-acetylmura 87.1 0.68 1.5E-05 46.8 4.1 37 1-37 3-39 (448)
442 PRK12549 shikimate 5-dehydroge 87.1 0.68 1.5E-05 43.7 3.8 33 5-37 128-161 (284)
443 TIGR02437 FadB fatty oxidation 87.0 0.6 1.3E-05 50.0 3.8 32 6-37 315-346 (714)
444 COG1250 FadB 3-hydroxyacyl-CoA 86.8 0.64 1.4E-05 44.1 3.4 32 5-36 4-35 (307)
445 PRK14694 putative mercuric red 86.6 2.7 5.8E-05 42.8 8.2 41 3-44 5-45 (468)
446 PRK08306 dipicolinate synthase 86.6 0.74 1.6E-05 43.7 3.8 34 4-37 152-185 (296)
447 PRK11199 tyrA bifunctional cho 86.5 0.79 1.7E-05 45.1 4.1 33 5-37 99-132 (374)
448 PRK00421 murC UDP-N-acetylmura 86.4 0.69 1.5E-05 47.0 3.7 34 5-38 8-42 (461)
449 PRK08017 oxidoreductase; Provi 86.4 0.89 1.9E-05 41.8 4.2 32 6-37 4-36 (256)
450 PRK11559 garR tartronate semia 86.2 0.84 1.8E-05 43.3 4.0 32 6-37 4-35 (296)
451 cd01078 NAD_bind_H4MPT_DH NADP 86.2 0.96 2.1E-05 39.9 4.1 32 5-36 29-61 (194)
452 PRK14573 bifunctional D-alanyl 86.0 0.72 1.6E-05 50.4 3.8 37 1-37 1-38 (809)
453 PRK01368 murD UDP-N-acetylmura 86.0 0.76 1.7E-05 46.5 3.8 31 5-36 7-37 (454)
454 PRK02006 murD UDP-N-acetylmura 86.0 0.72 1.6E-05 47.4 3.6 32 6-37 9-40 (498)
455 TIGR02355 moeB molybdopterin s 86.0 0.95 2.1E-05 41.5 4.0 33 4-36 24-57 (240)
456 PRK15461 NADH-dependent gamma- 85.9 0.74 1.6E-05 43.8 3.4 32 6-37 3-34 (296)
457 cd01483 E1_enzyme_family Super 85.9 1 2.2E-05 37.5 4.0 31 6-36 1-32 (143)
458 cd01487 E1_ThiF_like E1_ThiF_l 85.9 0.9 2E-05 39.4 3.7 31 6-36 1-32 (174)
459 PF00056 Ldh_1_N: lactate/mala 85.8 1.1 2.3E-05 37.5 3.9 32 6-37 2-36 (141)
460 PLN02507 glutathione reductase 85.8 3.3 7.1E-05 42.6 8.3 42 4-45 25-75 (499)
461 TIGR00561 pntA NAD(P) transhyd 85.7 0.73 1.6E-05 46.9 3.4 33 5-37 165-197 (511)
462 PRK00141 murD UDP-N-acetylmura 85.6 0.83 1.8E-05 46.6 3.8 33 5-37 16-48 (473)
463 TIGR02441 fa_ox_alpha_mit fatt 85.5 0.69 1.5E-05 49.8 3.3 32 6-37 337-368 (737)
464 PRK06849 hypothetical protein; 85.4 1.1 2.3E-05 44.5 4.4 38 1-38 1-39 (389)
465 PRK12779 putative bifunctional 85.3 0.8 1.7E-05 50.7 3.8 34 5-38 448-481 (944)
466 TIGR01292 TRX_reduct thioredox 85.3 3.4 7.5E-05 38.8 7.8 55 232-288 57-112 (300)
467 PRK05690 molybdopterin biosynt 85.3 1 2.3E-05 41.4 4.0 33 4-36 32-65 (245)
468 PF10727 Rossmann-like: Rossma 85.2 0.69 1.5E-05 37.8 2.5 33 4-36 10-42 (127)
469 PRK08644 thiamine biosynthesis 85.2 1.1 2.4E-05 40.2 4.1 33 4-36 28-61 (212)
470 PRK00683 murD UDP-N-acetylmura 85.2 0.88 1.9E-05 45.6 3.7 33 5-37 4-36 (418)
471 PRK09496 trkA potassium transp 85.0 0.78 1.7E-05 46.4 3.3 32 6-37 2-33 (453)
472 COG1063 Tdh Threonine dehydrog 84.9 0.9 1.9E-05 44.3 3.5 32 6-37 171-203 (350)
473 TIGR02356 adenyl_thiF thiazole 84.9 1.2 2.7E-05 39.6 4.1 33 4-36 21-54 (202)
474 TIGR02440 FadJ fatty oxidation 84.8 0.8 1.7E-05 49.0 3.4 32 6-37 306-338 (699)
475 TIGR00936 ahcY adenosylhomocys 84.8 1.2 2.7E-05 44.0 4.4 33 5-37 196-228 (406)
476 TIGR02853 spore_dpaA dipicolin 84.6 1 2.3E-05 42.5 3.7 33 5-37 152-184 (287)
477 PRK05476 S-adenosyl-L-homocyst 84.6 1.1 2.3E-05 44.7 3.9 33 5-37 213-245 (425)
478 PRK12548 shikimate 5-dehydroge 84.4 1.1 2.3E-05 42.5 3.7 33 5-37 127-160 (289)
479 PRK10669 putative cation:proto 84.4 0.85 1.8E-05 47.6 3.3 33 5-37 418-450 (558)
480 TIGR00507 aroE shikimate 5-deh 84.4 1.1 2.4E-05 41.9 3.8 32 5-36 118-149 (270)
481 TIGR01423 trypano_reduc trypan 84.3 3.7 8E-05 42.0 7.8 43 3-45 2-53 (486)
482 PRK07502 cyclohexadienyl dehyd 84.2 1.2 2.6E-05 42.6 4.0 33 5-37 7-41 (307)
483 TIGR03736 PRTRC_ThiF PRTRC sys 84.2 1.2 2.6E-05 40.8 3.8 33 3-35 10-53 (244)
484 COG0062 Uncharacterized conser 84.1 1.1 2.3E-05 39.8 3.3 29 7-35 53-84 (203)
485 PLN02172 flavin-containing mon 84.1 0.86 1.9E-05 46.3 3.1 33 5-37 205-237 (461)
486 cd05290 LDH_3 A subgroup of L- 84.1 1.3 2.7E-05 42.4 4.1 32 6-37 1-34 (307)
487 PF00070 Pyr_redox: Pyridine n 84.1 3.3 7.2E-05 30.5 5.6 39 231-270 39-77 (80)
488 PLN02695 GDP-D-mannose-3',5'-e 84.0 1.3 2.7E-05 43.7 4.2 34 3-36 20-54 (370)
489 cd05311 NAD_bind_2_malic_enz N 84.0 1.1 2.5E-05 40.6 3.6 33 5-37 26-61 (226)
490 KOG1335|consensus 84.0 0.55 1.2E-05 45.2 1.5 38 6-43 213-250 (506)
491 PTZ00142 6-phosphogluconate de 84.0 0.96 2.1E-05 45.9 3.4 33 5-37 2-34 (470)
492 PRK08328 hypothetical protein; 83.9 1.4 2.9E-05 40.3 4.0 33 4-36 27-60 (231)
493 PRK05442 malate dehydrogenase; 83.8 1.3 2.9E-05 42.6 4.1 37 1-37 1-45 (326)
494 cd01065 NAD_bind_Shikimate_DH 83.8 1.5 3.2E-05 37.0 4.0 33 5-37 20-53 (155)
495 PLN03050 pyridoxine (pyridoxam 83.7 1.1 2.4E-05 41.2 3.3 28 7-34 64-94 (246)
496 PRK11154 fadJ multifunctional 83.6 1.1 2.3E-05 48.3 3.7 32 6-37 311-343 (708)
497 PTZ00117 malate dehydrogenase; 83.6 1.4 3E-05 42.4 4.2 34 4-37 5-39 (319)
498 cd00300 LDH_like L-lactate deh 83.6 1.1 2.4E-05 42.7 3.5 31 7-37 1-33 (300)
499 TIGR03376 glycerol3P_DH glycer 83.6 1.2 2.5E-05 43.3 3.6 32 6-37 1-40 (342)
500 cd00757 ThiF_MoeB_HesA_family 83.5 1.4 3.1E-05 40.0 4.1 33 4-36 21-54 (228)
No 1
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=100.00 E-value=2.3e-78 Score=588.32 Aligned_cols=434 Identities=60% Similarity=1.004 Sum_probs=364.7
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCC--CCccccCCCCceeeeccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL--PDEVTFGRGRDWNVDLIP 78 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~--p~~~~~g~~~~~~idl~p 78 (441)
|+++|||||+|+|+.+++.|++|+++|++|+++|+|++|||.++|++ ++++..++.-.. +.. .++.+++|++||.|
T Consensus 1 m~~~yDviI~GTGl~esila~als~~GkkVLhiD~n~yYGg~~asl~-l~~l~~~~~~~~~~~~~-~~~~sR~ynIDL~P 78 (438)
T PF00996_consen 1 MDEEYDVIILGTGLTESILAAALSRSGKKVLHIDRNDYYGGEWASLN-LDQLYEWFRPKQWTPPE-SLGRSRDYNIDLIP 78 (438)
T ss_dssp --SBESEEEE--SHHHHHHHHHHHHTT--EEEE-SSSSSCGGG-EE--HHHHHHHHCCTCCHHHH-HHHTGGGC-EESS-
T ss_pred CCccceEEEECCCcHHHHHHHHHHhcCCEEEecCCCCCcCCchhccc-HHHHHHHhhcccccccc-ccccccceeEecch
Confidence 89999999999999999999999999999999999999999999999 999988886542 111 46778999999999
Q ss_pred ceeecCchHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCcccc
Q psy2620 79 KFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTW 158 (441)
Q Consensus 79 ~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~ 158 (441)
+++++.|+++++|.++++.+|+||+.+++.|++.+|++.++|+++.|+|+++++++++||.+|||+.++..+.+.++..|
T Consensus 79 Kll~a~g~LV~lLi~S~V~rYLEFk~V~~~~v~~~~~l~kVP~sr~dvf~s~~lsl~eKR~lmkFl~~v~~~~~~~~~~~ 158 (438)
T PF00996_consen 79 KLLYARGPLVKLLISSGVTRYLEFKAVDGSYVYKNGKLHKVPCSREDVFKSKLLSLFEKRRLMKFLKFVANYEEDDPSTH 158 (438)
T ss_dssp -BEETTSHHHHHHHHCTGGGGSEEEEESEEEEEETTEEEE--SSHHHHHC-TTS-HHHHHHHHHHHHHHHHGCTTBGGGS
T ss_pred HhhhccCHHHHHHHhCCcccceEEEEcceeEEEeCCEEeeCCCCHHHhhcCCCccHHHHHHHHHHHHHHhhcccCCcchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999988778788
Q ss_pred cccCCCCCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCCcchHHHHH
Q psy2620 159 KDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSF 238 (441)
Q Consensus 159 ~~~~~~~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG~~~l~~~l 238 (441)
+..++...++.++++++++++.+++++.+++++...+.+...|+..++.++..|+.|+++||++||+||.||.|+|+|+|
T Consensus 159 ~~~~~~~~~~~e~~~~f~L~~~~~~~i~haiaL~~~~~~~~~p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GELpQ~F 238 (438)
T PF00996_consen 159 KGLDPEKKTFQELLKKFGLSENLIDFIGHAIALSLDDSYLTEPAREGLERIKLYLSSLGRYGKSPFLYPLYGLGELPQAF 238 (438)
T ss_dssp TTG-TTTSBHHHHHHHTTS-HHHHHHHHHHTS-SSSSGGGGSBSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTHHHHHH
T ss_pred hccccccccHHHHHHhcCCCHHHHHHHHHhhhhccCcccccccHHHHHHHHHHHHHHHhccCCCCEEEEccCCccHHHHH
Confidence 87777789999999999999999999999999999888888899999999999999999999999999999999999999
Q ss_pred HHHHHHcCcEEEcccceeEEEE-eCCEEEEEEeCCeEEEcCEEEECCCCCccccccccceEEEEEEecCCCCCCCCCCee
Q psy2620 239 ARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCICLMDHPIPNTKDALSC 317 (441)
Q Consensus 239 ~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (441)
||.++.+||.++||++|.+|.. ++|++.+|+.+|++++|++||.+|+++|++++..+++.|+++++++|+..+....+.
T Consensus 239 cRl~AV~GG~Y~L~~~i~~i~~~~~g~~~gV~s~ge~v~~k~vI~dpsy~p~~v~~~~~V~RaI~Il~~pi~~t~~~~s~ 318 (438)
T PF00996_consen 239 CRLSAVYGGTYMLNRPIDEIVVDEDGKVIGVKSEGEVVKAKKVIGDPSYLPEKVKKTGQVSRAICILDHPIPNTEDASSV 318 (438)
T ss_dssp HHHHHHTT-EEESS--EEEEEEETTTEEEEEEETTEEEEESEEEEEGGGBGCGEEEEEEEEEEEEEESS-STTSTT-SSE
T ss_pred HHHhhhcCcEEEeCCccceeeeecCCeEEEEecCCEEEEcCEEEECCccCcccccccceEEEEEEEEcCCCCCCCCCceE
Confidence 9999999999999999999988 578999999999999999999999999988877889999999999999887666778
Q ss_pred EEEecCCCCCCCCcEEEEEecCCccccCCCeEEEEEEeeccCCChhhchHHHHhhcccccceeeeeeeccccCCCCCCCc
Q psy2620 318 QIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQ 397 (441)
Q Consensus 318 ~~~~p~~~~~~~~~i~~~~~~~~~~~~p~g~~~~~i~t~~~~~d~~~~l~~~l~~l~p~~~~~~~~~~~~~p~~~g~~~~ 397 (441)
++++|+.+.++.++||+.+++++++.||+|+|+++++|..++.+|.++|+++|+.|.|..+.|+++...|+|.++|..+|
T Consensus 319 ~IiiP~~~~~~~~dIyv~~~ss~~~~CP~G~yi~~~St~~~t~~p~~eL~~~l~lL~~i~e~f~~v~~~~~p~~~~~~~~ 398 (438)
T PF00996_consen 319 QIIIPQSQVGRKSDIYVLQLSSSTGVCPKGQYIAYVSTTVETSNPEEELEPALELLGPIEEKFVSVSDLYEPTDDGTDDN 398 (438)
T ss_dssp EEEE-GGGCTSSS-EEEEEEEGGGTSS-TT-EEEEEEEEE-SS-HHHHTHHHHHTT-SESEEEEEEEEEEEESSSSTTTS
T ss_pred EEecCCcccCCCCCeEEEEECCCccccCCCcEEEEEEeccCCCCcHHHHHHHHHhhccHHHHhcchhhcccccCCCccCc
Confidence 88899988888889999999999999999999999999888889999999999999999999999999999999999999
Q ss_pred eeeccCCCCCCChHhHHHHHHHHHhhccCCccccccchh
Q psy2620 398 IFISTSYDATTHFETVCTDVVNLFKRGTGEDFDFSKIKL 436 (441)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 436 (441)
||+++++|++.|||..+++|+++++|++|++|||.|.+.
T Consensus 399 i~is~~~dat~hfe~~~~dv~~~~~~~~g~~~~~~~~~~ 437 (438)
T PF00996_consen 399 IFISKSYDATSHFETTCEDVLDIYKRITGKDLDLSKRKH 437 (438)
T ss_dssp EEE-----S-SBSHHHHHHHHHHHHHHHSS---------
T ss_pred eEEcCCCCcccchHHHHHHHHHHHHHhhCCccccccCCC
Confidence 999999999999999999999999999999999999764
No 2
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=100.00 E-value=9e-73 Score=557.49 Aligned_cols=437 Identities=63% Similarity=1.094 Sum_probs=402.2
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCC-CCccccCCCCceeeecccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL-PDEVTFGRGRDWNVDLIPK 79 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~-p~~~~~g~~~~~~idl~p~ 79 (441)
|+++|||||||||++||++|+.|+++|++|+|||+|++|||+++|++ +++++.+|.... |.. .+|.+++|++|+.|+
T Consensus 1 m~~~~DViViGtGL~e~ilAa~Ls~~GkkVLhlD~n~~yGG~~as~~-l~~l~~~f~~~~~~~~-~~~~~r~~~iDL~Pk 78 (443)
T PTZ00363 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLN-LTQLYKKFKPGETPPE-SLGRNRDWNVDLIPK 78 (443)
T ss_pred CCCcceEEEECCChHHHHHHhhhhhCCCEEEEecCCCCcCccccccc-HHHHHHhhcccCCCch-hcccccccccccCCe
Confidence 88999999999999999999999999999999999999999999999 888876664322 222 467789999999999
Q ss_pred eeecCchHHHHHHHhCCcceeEEEEecceEEE-eCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCcccc
Q psy2620 80 FLMANGSLVKLLIHTGVTRYLEFKSVEGSYVF-KGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTW 158 (441)
Q Consensus 80 ~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~ 158 (441)
++++.|.++++|.++++.+|++|+.+++.+++ .+|+++++|.+..+.|.+.++++++|+.+|+|+.++.++...++..|
T Consensus 79 ~l~~~G~lv~lL~~s~v~ryleF~~l~g~~v~~~~g~~~~vP~s~~~~~~s~ll~l~eKr~l~kfl~~v~~~~~~~~~~~ 158 (443)
T PTZ00363 79 FIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIHKVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETH 158 (443)
T ss_pred eeecCChHHHHHhhcCccceeeeEEeceEEEEecCCeEEECCCCHHHHhhCCCcchhhHHHHHHHHHHHHhhccCChhhh
Confidence 99999999999999999999999999999988 88999999999999999999999999999999999999887766677
Q ss_pred cccCCCCCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCCcchHHHHH
Q psy2620 159 KDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSF 238 (441)
Q Consensus 159 ~~~~~~~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG~~~l~~~l 238 (441)
+..++...|+.+|++++++++..++++.++++++..+.+...|+..++.++..|+.++++||.+++.||.||+++|+++|
T Consensus 159 ~~~~~d~~T~~d~L~~~~ls~~~~d~i~~~ial~~~~~~~~~pa~~tl~ri~~y~~S~~~~g~~p~~yp~gG~g~L~qal 238 (443)
T PTZ00363 159 KGLNLKTMTMAQLYKKFGLEDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQAF 238 (443)
T ss_pred cccCcccCCHHHHHHHhCCCHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHHHHHHhhccCCcceeeCCCHHHHHHHH
Confidence 66655678999999999999999999999999876666777788999999999999999999989999999999999999
Q ss_pred HHHHHHcCcEEEcccceeEEEEeC-CEEEEEEe-CCeEEEcCEEEECCCCCccccccccceEEEEEEecCCCCCCCCCCe
Q psy2620 239 ARLSAIYGGTYMLDKPVDEIVIEN-GKVVGVRS-GTEIARCKQVYCDPSYVQDRVKKLNQVIRCICLMDHPIPNTKDALS 316 (441)
Q Consensus 239 ~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~~-~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (441)
+|.++++|++|+++++|++|..++ +++++|++ +|++++|+.||++++++|..++..+++.|+++++++|+..+....+
T Consensus 239 ~r~~a~~Gg~~~L~~~V~~I~~~~~g~~~~V~~~~Ge~i~a~~VV~~~s~~p~~~~~~~~v~R~i~i~~~pi~~~~~~~~ 318 (443)
T PTZ00363 239 SRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVGKVIRCICILNHPIPNTNNANS 318 (443)
T ss_pred HHHHHHcCcEEEcCCeEEEEEEcCCCeEEEEEECCCcEEECCEEEECccccccccccccEEEEEEEEEcccccccCcCcc
Confidence 999999999999999999998864 68888987 7889999999999999999888889999999999999977666677
Q ss_pred eEEEecCCCCCCCCcEEEEEecCCccccCCCeEEEEEEeeccCCChhhchHHHHhhcccccceeeeeeeccccCCCCCCC
Q psy2620 317 CQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTES 396 (441)
Q Consensus 317 ~~~~~p~~~~~~~~~i~~~~~~~~~~~~p~g~~~~~i~t~~~~~d~~~~l~~~l~~l~p~~~~~~~~~~~~~p~~~g~~~ 396 (441)
.++++|+.+.++.+.||+.+++++++.||+|+|+++++|..++.||+++|+++++.|.|..+.|+++...|+|.++|.++
T Consensus 319 ~~i~~P~~~~~~~~~i~v~~~s~~~~~cp~g~~i~~~st~~~t~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 398 (443)
T PTZ00363 319 CQIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIISTTVETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKD 398 (443)
T ss_pred EEEEECCcccCCCCCEEEEEecCCCCcCCCCcEEEEEEEecCCCCHHHHHHHHHHHhccchheEEeccccccccccCCCC
Confidence 88999999888889999999999999999999999999998889999999999999999999999988889999888999
Q ss_pred ceeeccCCCCCCChHhHHHHHHHHHhhccCCccccccchhhhh
Q psy2620 397 QIFISTSYDATTHFETVCTDVVNLFKRGTGEDFDFSKIKLEEE 439 (441)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 439 (441)
|+|+++++|+++|||..+++++++|++++|+++||+++.+..+
T Consensus 399 ~~~~~~~~d~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (443)
T PTZ00363 399 NIFISKSYDATSHFESATEDVLDLYKRITGKDLDLTNIPETAD 441 (443)
T ss_pred CEEEeCCCCccccHHHHHHHHHHHHHHhhCCcceecCCCcccc
Confidence 9999999999999999999999999999999999998877654
No 3
>KOG1439|consensus
Probab=100.00 E-value=6.5e-70 Score=502.30 Aligned_cols=434 Identities=66% Similarity=1.060 Sum_probs=412.9
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCC--CCCCccccCCCCceeeeccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGS--TLPDEVTFGRGRDWNVDLIP 78 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~--d~p~~~~~g~~~~~~idl~p 78 (441)
|+++|||||+|+|+..++.+..|++.|++|+++|||++|||..+|.+ +.+++.+|.- +.|.+ ..+.+++|++|+.|
T Consensus 1 mdeeyDvivlGTgl~ecilS~~Ls~~gkkVLhiDrN~yYG~~saslt-l~ql~~~f~~~~~~~~~-~~~~~rd~nvDLiP 78 (440)
T KOG1439|consen 1 MDEEYDVIVLGTGLTECILSGALSVDGKKVLHIDRNDYYGGESASLT-LEQLYKKFKKVSEKPPE-KLGRDRDWNVDLIP 78 (440)
T ss_pred CCCceeEEEEcCCchhheeeeeeeecCcEEEEEeCCCCCCcccccee-HHHHHHHhccccccCcc-ccccccccchhhch
Confidence 88899999999999999999999999999999999999999999999 9999888872 22333 46788999999999
Q ss_pred ceeecCchHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCcccc
Q psy2620 79 KFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTW 158 (441)
Q Consensus 79 ~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~ 158 (441)
+++++.+.++++|+++++.+||+|+.+++.|++.+|+++++|.++.+++.+.++++++||.++||+.++..+.++++..|
T Consensus 79 K~lmAn~~Lvk~Li~T~V~~YL~fk~i~gsfv~~~~k~~KVP~t~~Ea~~s~lmgl~eKrr~~kFl~~V~n~~e~~~~~~ 158 (440)
T KOG1439|consen 79 KFLMANGELVKILIHTGVTRYLEFKSISGSFVYKKGKIYKVPATEAEALTSPLMGLFEKRRVMKFLKFVLNYDEEDPKTW 158 (440)
T ss_pred HhhhccchHHHHHHHhchhhheEEEeecceEEEECCeEEECCCCHHHHhcCCccchhHHHHHHHHHHHHhhhhhhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCCcchHHHHH
Q psy2620 159 KDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSF 238 (441)
Q Consensus 159 ~~~~~~~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG~~~l~~~l 238 (441)
+.++..+.++.+++.++++..+..++..|++++...+.|++.|..+.+.++..|+.|+++||.++++||.+|.++|+|+|
T Consensus 159 ~~~~~~k~tm~~~~~~~~l~~~~~~f~gh~~al~~dd~~ld~p~~~~~~ri~~Y~~S~~~yg~~~ylyP~yGlgEL~QgF 238 (440)
T KOG1439|consen 159 QGYDLSKDTMREFLGKFGLLEGTIDFIGHAIALLCDDSYLDQPAKETLERILLYVRSFARYGKSPYLYPLYGLGELPQGF 238 (440)
T ss_pred cccccccchHHHHHHHhcccccceeeeeeeeEEEecchhccCccHHHHHHHHHHHHHHhhcCCCcceecccCcchhhHHH
Confidence 98887667999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcEEEcccceeEEEE-eCCEEEEEEeCCeEEEcCEEEECCCCCccccccccceEEEEEEecCCCCCCCCCCee
Q psy2620 239 ARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCICLMDHPIPNTKDALSC 317 (441)
Q Consensus 239 ~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (441)
||.++..||++++|.++.+|.. ++|++++|+..++...++.||+.|++.|++++..+++.|.+|++++|..++....+.
T Consensus 239 aRlsAvyGgTYMLn~pi~ei~~~~~gk~igvk~~~~v~~~k~vi~dpSY~~~~~k~vg~viR~iCIl~hpi~~t~~~~S~ 318 (440)
T KOG1439|consen 239 ARLSAVYGGTYMLNKPIDEINETKNGKVIGVKSGGEVAKCKKVICDPSYFPQKVKKVGQVIRAICILSHPIPNTNDAESA 318 (440)
T ss_pred HHHhhccCceeecCCceeeeeccCCccEEEEecCCceeecceEEecCccchHHHHhhhheeeeeEEecCCcCcCCcccee
Confidence 9999999999999999999998 789999999988999999999999999999888899999999999999888888999
Q ss_pred EEEecCCCCCCCCcEEEEEecCCccccCCCeEEEEEEeeccCCChhhchHHHHhhcccccceeeeeeeccccCCCCCCCc
Q psy2620 318 QIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQ 397 (441)
Q Consensus 318 ~~~~p~~~~~~~~~i~~~~~~~~~~~~p~g~~~~~i~t~~~~~d~~~~l~~~l~~l~p~~~~~~~~~~~~~p~~~g~~~~ 397 (441)
++++|+.+.++.++||+...++++..||+|+++.+++|..++.+|+.++.++++.|.|..+.|+.+...|+|.+.+..+|
T Consensus 319 qiiipq~q~~rksdi~v~~~ss~~~vcpeG~yia~vsT~~Et~~pE~ei~~~lellg~~~e~Fv~i~d~y~p~~~~~~~~ 398 (440)
T KOG1439|consen 319 QIIIPQFQVGRKSDIYVFGLSSAHNVCPEGKYIAYVSTTVETPNPEVEILPGLELLGPIDEKFVGISDLYEPVDDGTESN 398 (440)
T ss_pred eEEechhhhCCcccEEEEEeccCCCcCCCceEEEEEEeccCCCChHHhhhhHHHhhCchhhhhccccceEEecccCccce
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888899
Q ss_pred eeeccCCCCCCChHhHHHHHHHHHhhccCCccccccchh
Q psy2620 398 IFISTSYDATTHFETVCTDVVNLFKRGTGEDFDFSKIKL 436 (441)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 436 (441)
+|++.++|+++||+.+..+++++++++.++.+||....+
T Consensus 399 ~f~s~syDaT~HFet~~~dv~~i~~~~~~~~~~~~~~~~ 437 (440)
T KOG1439|consen 399 IFISTSYDATTHFETTVYDVLDIYKRLTGKELDLSEDDE 437 (440)
T ss_pred EEEEcccCCCCchHHHHHHHHHHHHhhcccccccccccc
Confidence 999999999999999999999999999999999998876
No 4
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3e-56 Score=406.84 Aligned_cols=424 Identities=45% Similarity=0.762 Sum_probs=371.7
Q ss_pred CCCc--ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCC--CCCccccCCCCceeeec
Q psy2620 1 MDEE--YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGST--LPDEVTFGRGRDWNVDL 76 (441)
Q Consensus 1 m~~~--~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d--~p~~~~~g~~~~~~idl 76 (441)
|++. |||+|+|+|+..++.+++|+.+|++|+++|+|++||+..+|.+ ..++...|.-- .|+ ..+..++|++|+
T Consensus 1 Md~~~~yDvii~GTgl~esils~~Ls~~~k~VlhiD~Nd~YG~~~aslt-l~ql~~~~~~~~~~p~--k~~~drd~~iDL 77 (434)
T COG5044 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT-LTQLEKYFDECEKRPS--KGGGDRDLNIDL 77 (434)
T ss_pred CCccccccEEEecccHHHHHHHHHhhhcCceEEEEeCCCccCcccccee-HHHHHHHhhhhhcccc--ccccccccchhh
Confidence 5544 9999999999999999999999999999999999999999999 88877666432 233 235578999999
Q ss_pred ccceeecCchHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCcc
Q psy2620 77 IPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPK 156 (441)
Q Consensus 77 ~p~~l~~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~ 156 (441)
.|+++++.+.++++|+++++.+|++|+.+.+.|.+.+|+++++|.++.++|.+.++++++|+.+|||++++..|.+ ...
T Consensus 78 ~PK~l~A~s~l~~iLi~t~v~~YLefk~i~~~~~~~~~k~~kVP~ne~ei~~s~~lsL~eKr~vmrFl~~V~n~~~-~~~ 156 (434)
T COG5044 78 IPKFLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYKVPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNYAE-QKS 156 (434)
T ss_pred chhhhcccchHHHHHHHhChHhheeeeeccccEEecCCcEEECCccHHhhhcCCCcchhhHHHHHHHHHHHHhHHh-hhh
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999887 445
Q ss_pred cccccCCCCCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCCcchHHH
Q psy2620 157 TWKDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQ 236 (441)
Q Consensus 157 ~~~~~~~~~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG~~~l~~ 236 (441)
.|+.+...+.++....++|+++....+++.+.++++.+ ++.|..+++.++..|++|++.||.+|++||++|.++|+|
T Consensus 157 ~~~~~~e~k~~~~~~~ekf~L~~~~~e~i~~~i~l~ld---l~~p~re~~erIl~Y~~Sf~~yg~~pyLyp~YGl~El~Q 233 (434)
T COG5044 157 TLQELYESKDTMEFLFEKFGLSGATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGELSQ 233 (434)
T ss_pred hchhhhhcccHHHHHHHHHccCcchhhhhhhhhhhhcc---ccCCchHHHHHHHHHHHhhcccCCCcceeeccCchhhhH
Confidence 55555433345556668999998999999999988764 567889999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCcccccccc---ceEEEEEEec-CCCCCCC
Q psy2620 237 SFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLN---QVIRCICLMD-HPIPNTK 312 (441)
Q Consensus 237 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~~~~~---~~~~~~~~~~-~~~~~~~ 312 (441)
.|||.++..||++++|+++.+|...+. |.+|..++.+..|.+||+++.+.+.+.+..+ .++|..|++. .+..+..
T Consensus 234 GFaRssav~GgtymLn~~i~ein~tk~-v~~v~~~~~~~ka~KiI~~~~~~~~~~~~~~q~yriiRa~Ci~~~h~~~~~~ 312 (434)
T COG5044 234 GFARSSAVYGGTYMLNQAIDEINETKD-VETVDKGSLTQKAGKIISSPTYFREDSKSVGQFYRIIRAICILLVHPVPFTT 312 (434)
T ss_pred HHHHhhhccCceeecCcchhhhccccc-eeeeecCcceeecCcccCCcccccccccccchhhhhhHhhhhhhcCcccccc
Confidence 999999999999999999999976444 4567777889999999999999886654444 6788888877 6656666
Q ss_pred CCCeeEEEecCCCCCCCCcEEEEEecCCccccCCCeEEEEEEeeccCCChhhchHHHHhhcccccceeeeeeeccccCCC
Q psy2620 313 DALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDL 392 (441)
Q Consensus 313 ~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~p~g~~~~~i~t~~~~~d~~~~l~~~l~~l~p~~~~~~~~~~~~~p~~~ 392 (441)
...+.++++|+.+..+.+.|++..+++++..||+|+++++++|..++.+|+.++.++++.|-|....+..+-..|.|..+
T Consensus 313 ~~ds~~iif~~~~lk~~~~i~v~~lgs~~~~CPEGy~l~yisT~~et~~~e~ei~~~lell~~~~e~~~~~e~iyq~~ed 392 (434)
T COG5044 313 GLDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYISTIDETPTPEDEILAALELLGPSVEKFVDVEEIYQPDED 392 (434)
T ss_pred ccccceeeechhhhcccCceEEEEecCCCCCCCCceEEEEEEeccCCCChHHHHHHHHHhhcchhhccccceeeeecccc
Confidence 77889999999988888999999999999999999999999999999999999999999999988777766667777643
Q ss_pred CCCCceeeccCCCCCCChHhHHHHHHHHHhhccCCccccccc
Q psy2620 393 GTESQIFISTSYDATTHFETVCTDVVNLFKRGTGEDFDFSKI 434 (441)
Q Consensus 393 g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~ 434 (441)
-++++.+++.|+..||+.+..++.+.+.++++.++-|+.-
T Consensus 393 --~~~~~~~~s~De~~~~e~l~~~i~~~y~~~t~~~~vfd~~ 432 (434)
T COG5044 393 --TNQVYLSDSVDESSHFESLTYEIKGIYKRFTGTPLVFDQR 432 (434)
T ss_pred --cceeEEeccccccccHHHHHHHHHHHHHhhcCCccccccC
Confidence 6799999999999999999999999999999999888753
No 5
>KOG4405|consensus
Probab=100.00 E-value=1.3e-50 Score=373.04 Aligned_cols=422 Identities=27% Similarity=0.487 Sum_probs=325.7
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchH--------HHhhhhC--CC-----------C-
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLE--------ELFSKFG--ST-----------L- 60 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~--------~~~~g~~--~d-----------~- 60 (441)
+.|||||||+|+.+.+.|++.+|+|.+|++||+|.+|||.|+|+. +. .+.+.-+ .+ +
T Consensus 7 ~~fDvVViGTGlpESilAAAcSrsG~sVLHlDsn~yYGg~waSfS-ms~ihe~~e~~l~~~d~ls~eVe~~~al~~n~~~ 85 (547)
T KOG4405|consen 7 EEFDVVVIGTGLPESILAAACSRSGSSVLHLDSNEYYGGNWASFS-MSMIHEVEEAALTKKDHLSNEVEPPSALQKNNAP 85 (547)
T ss_pred hhccEEEEcCCCcHHHHHHHhhhcCCceEeccCccccCCccccee-echhhhhhHHHHhhhhccccccCCCccccccCCC
Confidence 579999999999999999999999999999999999999999998 55 2211100 00 0
Q ss_pred -------------------CC-c-----c--------ccCCCCceeeecccceeecCchHHHHHHHhCCcceeEEEEecc
Q psy2620 61 -------------------PD-E-----V--------TFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEG 107 (441)
Q Consensus 61 -------------------p~-~-----~--------~~g~~~~~~idl~p~~l~~~~~~~~~l~~~~~~~~l~~~~~~~ 107 (441)
|+ . . ....+++|++||.|+++++.|.++++|+++++.+|.||+.++.
T Consensus 86 ~t~~sn~e~~~~vEken~~~~s~~d~~E~~p~~nr~~i~~~~RRFniDLvpkilys~g~lI~lLikS~vsrYaEFK~V~r 165 (547)
T KOG4405|consen 86 PTPPSNNEIFLEVEKENCIPSSLKDSVEDSPSKNRSQIEKESRRFNIDLVPKILYSAGELIQLLIKSNVSRYAEFKNVDR 165 (547)
T ss_pred CCCCCCchhhhheeeeccccccccchhhhcccccHHHHHHhccccchhhhhHHHhcccHHHHHHHHhcchhhhhhhccch
Confidence 10 0 0 1234689999999999999999999999999999999999999
Q ss_pred eEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcc-cCcccccccCCCCCcHHHHHHHhCCCcchhHHHH
Q psy2620 108 SYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSE-ADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTG 186 (441)
Q Consensus 108 ~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~l~~~~l~~~~~~~~~ 186 (441)
.+.+..|++..+|+++.++|+++-+++.+||.+|||+.+|..|.. ..+..+..+ ...+|.+||+++++.++++.++.
T Consensus 166 ~l~~~eg~l~~VPcSRadvFnsk~LTivEKr~LMKFltfc~~y~tEk~~~~~~~~--~e~~F~EyL~~~rltp~lqs~vl 243 (547)
T KOG4405|consen 166 ILAFREGELEQVPCSRADVFNSKSLTIVEKRMLMKFLTFCQEYLTEKDPDEYVEF--RERPFSEYLKTMRLTPKLQSIVL 243 (547)
T ss_pred hhcccCCeeeecCchHHhhhcccchhHHHHHHHHHHHHHHHHhhhccCcHHHHHh--hcCcHHHHHHhcCCChhhHHHHH
Confidence 998889999999999999999999999999999999999999853 244444444 35799999999999999999999
Q ss_pred HHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEE
Q psy2620 187 HALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVV 266 (441)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~ 266 (441)
+++++...++ ..+..++.+...|+.++|+||+.+|++|.||.|+|+|+|||.|+++|+.++++.+|+.|..+.+...
T Consensus 244 ~aIaM~~~~~---~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGELpQcFCRlcAVfGgIYcLr~~Vq~ivldk~s~~ 320 (547)
T KOG4405|consen 244 HAIAMLSESQ---LTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGELPQCFCRLCAVFGGIYCLRRPVQAIVLDKESLD 320 (547)
T ss_pred HHHHhcCccc---ccHHHHHHHHHHHHHHhhccCCCcceeeccCCCcchHHHHHHHHHhcceEEeccchhheeecccccc
Confidence 9999876432 4567899999999999999999999999999999999999999999999999999999988765432
Q ss_pred ---EEEeCCeEEEcCEEEECCCCCcccccc---ccceEEEEEEecCCCCCCCCCCee-EEEecCCCCCCCCcEEEEEecC
Q psy2620 267 ---GVRSGTEIARCKQVYCDPSYVQDRVKK---LNQVIRCICLMDHPIPNTKDALSC-QIIIPQKQVNRKSDIYVSLVSY 339 (441)
Q Consensus 267 ---~v~~~g~~~~a~~vI~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~-~~~~p~~~~~~~~~i~~~~~~~ 339 (441)
++...|+++.|+++|+++++.|..+.. ..++.|+.++++.++.++...... ...+++...+. ..+.+..+..
T Consensus 321 ~~~~l~s~g~ri~~k~~v~s~~y~pe~~~~~~~~K~Israv~itd~sil~~e~~q~~~ll~~~~~epg~-~avr~iel~~ 399 (547)
T KOG4405|consen 321 CKAILDSFGQRINAKNFVVSPSYAPEVVCSRVQLKQISRAVLITDPSILKTELDQQLSLLSLLAVEPGA-MAVRLIELCS 399 (547)
T ss_pred hhhhHhhhcchhcceeeeecCcccccccccccchhhcceeEEecCccccchhHHhhhhhhhccccCcch-hhHHHHHhhc
Confidence 334578999999999999999865421 226899999999888765432222 22233322221 2233455677
Q ss_pred CccccCCCeEEEEEEeeccCCChhhchHHHHhhcc-----ccc-c-e-eeeee-ecccc---CCCCCCCceeeccCCCCC
Q psy2620 340 THQVSAKGWFIAMVSTTVETDNPELEIKPGLDLLG-----SYK-K-K-FVTVS-DYYEP---TDLGTESQIFISTSYDAT 407 (441)
Q Consensus 340 ~~~~~p~g~~~~~i~t~~~~~d~~~~l~~~l~~l~-----p~~-~-~-~~~~~-~~~~p---~~~g~~~~~~~~~~~~~~ 407 (441)
..+.||+|.|+++++...+ ....++++..+.++. -+- + . .|..+ .+-.- ...+.+.||++++++|..
T Consensus 400 ~t~tc~kg~yLvhlT~~~s-~~~~ed~~S~~~kif~t~~~~E~~kp~llw~~yf~~~~~s~~s~s~~~~nvyv~~~pD~n 478 (547)
T KOG4405|consen 400 STMTCPKGTYLVHLTCLSS-KTAREDLESDVVKIFTTEIKNETSKPRLLWALYFTMRDSSVISRSPLAENVYVCPPPDCN 478 (547)
T ss_pred ccccCccceEEEEeecccC-cccccchhhhHHHHhhhhhccccccceehHHHHhhHHhhcccccCCCCCceEECCCCCCC
Confidence 8899999999999985321 122333444433332 221 1 1 11111 11111 112357899999999999
Q ss_pred CChHhHHHHHHHHHhhccCCcccccc
Q psy2620 408 THFETVCTDVVNLFKRGTGEDFDFSK 433 (441)
Q Consensus 408 ~~~~~~~~~v~~~~~~~~~~~~~~~~ 433 (441)
++++++++++.++|+++|| ..||.+
T Consensus 479 L~y~~aVe~a~~Lf~k~~p-~edf~p 503 (547)
T KOG4405|consen 479 LGYDEAVEQARTLFQKIFP-SEDFLP 503 (547)
T ss_pred cChHHHHHHHHHHHHHhCC-hhhhCC
Confidence 9999999999999999997 677765
No 6
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.97 E-value=1.3e-29 Score=256.37 Aligned_cols=360 Identities=17% Similarity=0.213 Sum_probs=211.1
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceee
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLM 82 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~ 82 (441)
..+||||||||++||+||++||++|++|+||||++++||+++|++ +. ||.||. +|.++.
T Consensus 2 ~~~dvvVIGaG~~GL~aAa~LA~~G~~V~VlE~~~~~GG~a~t~e-~~----Gf~fd~----------------G~~~~~ 60 (487)
T COG1233 2 PMYDVVVIGAGLNGLAAAALLARAGLKVTVLEKNDRVGGRARTFE-LD----GFRFDT----------------GPSWYL 60 (487)
T ss_pred CCccEEEECCChhHHHHHHHHHhCCCEEEEEEecCCCCcceEEEe-cc----ceEecc----------------Ccceee
Confidence 369999999999999999999999999999999999999999998 55 665554 444433
Q ss_pred cCchHHHHHHHhC-Cc-ceeEEEEecceE--EEeCCeEEeCCCChHHHhhhccCCh--HHHHHHHHHHHHHHhhccc---
Q psy2620 83 ANGSLVKLLIHTG-VT-RYLEFKSVEGSY--VFKGGKISKVPVDQKEALASDLMGL--FEKRRFRNFLVYIQEFSEA--- 153 (441)
Q Consensus 83 ~~~~~~~~l~~~~-~~-~~l~~~~~~~~~--~~~~g~~~~~p~~~~~~~~~~~~~~--~~k~~l~~~~~~~~~~~~~--- 153 (441)
-.... .++.+.+ +. ..+.+...++.+ .+++|....+..+. +.+...+... .+...+++++....+..+.
T Consensus 61 ~~~~~-~~~~~l~~l~~~~l~~~~~~~~~~~~~~~g~~~~~~~d~-~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ 138 (487)
T COG1233 61 MPDPG-PLFRELGNLDADGLDLLPPDPAYRVFLPDGDAIDVYTDL-EATAELLESLEPGDGEALARYLRLLARLYELLAA 138 (487)
T ss_pred cCchH-HHHHHhccCcccceeeeccCCceeeecCCCCEEEecCCH-HHHHHHHHhhCcccHHHHHHHHHHHHHhhHHHHh
Confidence 22222 3344444 43 447777766665 34557777777773 4433332222 2444555555533331110
Q ss_pred -----Cccccc-ccC----------CCCCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhh
Q psy2620 154 -----DPKTWK-DIN----------PQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLA 217 (441)
Q Consensus 154 -----~~~~~~-~~~----------~~~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~ 217 (441)
....+. ... ....+..+++.....++.++..+....... . ..|.... .+..++ ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~f~~~~~r~~~~~~~~~~----~-~~p~~~~--a~~~~~--~~ 209 (487)
T COG1233 139 LLLAPPRSELLLVPDTPERLLRLLGFSLTSALDFFRGRFGSELLRALLAYSAVYG----G-APPSTPP--ALYLLL--SH 209 (487)
T ss_pred hcCCCchhhhhhccccHHHHHHHHHHhhhhHHHHHHHHhcCHHHHHHHHHHHHhc----C-CCCCchh--HHHHHH--HH
Confidence 000000 000 011233333333322223333332211111 0 1111111 011111 11
Q ss_pred hhCCCCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCC-Ccccc----
Q psy2620 218 RYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSY-VQDRV---- 291 (441)
Q Consensus 218 ~~G~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~-~~~~~---- 291 (441)
.....++.+|+||+++|+++|++.++++||+|+++++|++|..++|+.+++.+ +|+.+++|.||++... .+..+
T Consensus 210 ~~~~~G~~~p~GG~~al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~g~g~~~~~~~g~~~~ad~vv~~~~~~~~~~l~~~~ 289 (487)
T COG1233 210 LGLSGGVFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIEADAVVSNADPALLARLLGEA 289 (487)
T ss_pred hcccCCeeeeeCCHHHHHHHHHHHHHHcCCEEECCCceEEEEEeCCcceEEeccccceeccceeEecCchhhhhhhhhhh
Confidence 11233689999999999999999999999999999999999999998777776 4568999999998765 22222
Q ss_pred ---ccccceEEEEEEecCCCCCCCC--C--CeeEEEecCCCCCCCCcEEEEEecCCccccCCCeEEEEEEeeccCCChhh
Q psy2620 292 ---KKLNQVIRCICLMDHPIPNTKD--A--LSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETDNPEL 364 (441)
Q Consensus 292 ---~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~p~g~~~~~i~t~~~~~d~~~ 364 (441)
+..+...+...++..++.++.. . +...+++.+... .+...... ..+.-| ...+++||.. ||+
T Consensus 290 ~~~~~~~~~~~~~~al~~~~g~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~-~~g~~~--~~~v~~ps~~---Dps- 358 (487)
T COG1233 290 RRPRYRGSYLKSLSALSLYLGLKGDLLPLAHHTTILLGDTRE----QIEEAFDD-RAGRPP--PLYVSIPSLT---DPS- 358 (487)
T ss_pred hhhccccchhhhhHHHHhccCCCCCCcchhhcceEecCCcHH----HHHHHhhh-hcCCCC--ceEEeCCCCC---CCc-
Confidence 1234455666666666666431 1 223333333210 00000011 122223 4456677776 999
Q ss_pred chHHHHhhcccccceeeeeeeccccCCCCCCCceeeccCCCCCCChHhHHHHHHHHHhhccC
Q psy2620 365 EIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNLFKRGTG 426 (441)
Q Consensus 365 ~l~~~l~~l~p~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 426 (441)
++|+|+| +++.+|.|.+. ...|++ .++++.+. ++.++++.|
T Consensus 359 --------~AP~G~~--~~~~~~~~~~~--------~~~~~~--~~~~~~~~-~~~~~~~~p 399 (487)
T COG1233 359 --------LAPEGKH--STFAQLVPVPS--------LGDYDE--LKESLADA-IDALEELAP 399 (487)
T ss_pred --------cCCCCCc--ceeeeeeecCc--------CCChHH--HHHHHHHH-HHHHhhcCC
Confidence 9999999 56777877651 125666 67888887 777777754
No 7
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.97 E-value=1.8e-28 Score=250.80 Aligned_cols=361 Identities=15% Similarity=0.151 Sum_probs=223.8
Q ss_pred EEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecCch
Q psy2620 7 AIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMANGS 86 (441)
Q Consensus 7 VvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~~~ 86 (441)
|||||||++||+||++|+++|++|+|||+++++||+++|++ +. | |.+|.+++++...+.
T Consensus 1 vvVIGaG~~GL~aA~~La~~G~~V~VlE~~~~~GG~~~t~~-~~----G----------------~~fD~G~~~~~~~~~ 59 (502)
T TIGR02734 1 AVVIGAGFGGLALAIRLAAAGIPVTVVEQRDKPGGRAGVLE-DD----G----------------FRFDTGPTVITMPEA 59 (502)
T ss_pred CEEECcCHHHHHHHHHHHhCCCcEEEEECCCCCcCceEEEe-cC----C----------------eEEecCCeEEccccH
Confidence 69999999999999999999999999999999999999988 44 4 455666776654455
Q ss_pred HHHHHHHhCC--cceeEEEEecceE--EEeCCeEEeCCCChHHHhhhccCChH--HHHHHHHHHHHHHhhcc--------
Q psy2620 87 LVKLLIHTGV--TRYLEFKSVEGSY--VFKGGKISKVPVDQKEALASDLMGLF--EKRRFRNFLVYIQEFSE-------- 152 (441)
Q Consensus 87 ~~~~l~~~~~--~~~l~~~~~~~~~--~~~~g~~~~~p~~~~~~~~~~~~~~~--~k~~l~~~~~~~~~~~~-------- 152 (441)
+.+++.+.++ .+++++...++.+ .+++|+.+.++.+ .+.+.+.+...+ +...+.+|++.+.....
T Consensus 60 ~~~l~~~lg~~l~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (502)
T TIGR02734 60 LEELFALAGRDLADYVELVPLDPFYRLCWEDGSQLDVDND-QEELEAQIARFNPGDVAGYRRFLDYAERVYREGYRKLGY 138 (502)
T ss_pred HHHHHHHcCCChhheEEEEECCCceEEECCCCCEEEecCC-HHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 6667777763 4678888877654 4466777777776 344444333322 44556666655443221
Q ss_pred cCcccc----c------ccCCCCCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCC
Q psy2620 153 ADPKTW----K------DINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKS 222 (441)
Q Consensus 153 ~~~~~~----~------~~~~~~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~ 222 (441)
...... . .......++.++++++..++.++.++.......... ....+.... + + ....+ ..
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~g~~-p~~~~~~~~---l---~-~~~~~-~~ 209 (502)
T TIGR02734 139 VPFLSPRDLLRADLPQLLALLAWRSLYSKVARFFSDERLRQAFSFHALFLGGN-PFRTPSIYA---L---I-SALER-EW 209 (502)
T ss_pred CCCCCHHHHHhHhhHhhhhccCcCCHHHHHHhhcCCHHHHHHhcccceeeccC-cccchHHHH---H---H-HHHHh-hc
Confidence 001000 0 001135788888888777777776664221111111 111121111 1 1 11111 12
Q ss_pred CeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCC-------ccc----
Q psy2620 223 PYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYV-------QDR---- 290 (441)
Q Consensus 223 ~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~-------~~~---- 290 (441)
++.+|.||++.++++|.+.++++|++|+++++|++|..+++++++|++ +|+++.||+||++.+.. +..
T Consensus 210 g~~~~~gG~~~l~~al~~~~~~~G~~i~~~~~V~~i~~~~~~~~~V~~~~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~ 289 (502)
T TIGR02734 210 GVWFPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADGERLDADAVVSNADLHHTYRRLLPNHPRRR 289 (502)
T ss_pred eEEEcCCCHHHHHHHHHHHHHHCCCEEEECCeEEEEEeeCCEEEEEEECCCCEEECCEEEECCcHHHHHHHhcCcccccc
Confidence 466899999999999999999999999999999999988888889987 56789999999977642 111
Q ss_pred -c-------ccccceEEEEEEecCCC-CCCCCCCeeEEEecCCCCCCCCcEEEEEecCCccccCCCeE-EEEEEeeccCC
Q psy2620 291 -V-------KKLNQVIRCICLMDHPI-PNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWF-IAMVSTTVETD 360 (441)
Q Consensus 291 -~-------~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~p~g~~-~~~i~t~~~~~ 360 (441)
. +...+.+.+++++++.+ .+.... ...+++.++.......+ ...+..|.... .+.+++..
T Consensus 290 ~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~-~~~~~~~~~~~~~~~~~------~~~g~~~~~p~~~v~~~s~~--- 359 (502)
T TIGR02734 290 YPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLA-HHTLCFGPRYKELFDEI------FRKGRLAEDPSLYLHRPTVT--- 359 (502)
T ss_pred ccccccccCCcCCeeeEEEEeeccccCcCCCcC-ceeEecCcCHHHHHHHH------hcCCCCCCCCcEEEEcCCCC---
Confidence 0 11245667777887543 221111 22333322200000000 00122333322 23344444
Q ss_pred ChhhchHHHHhhcccccceeeeeeeccccCCCCCCCceeeccCCCCCCChHhHHHHHHHHHhhc-cC
Q psy2620 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNLFKRG-TG 426 (441)
Q Consensus 361 d~~~~l~~~l~~l~p~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~ 426 (441)
||+ ++|+|+|.+++.. +.|+.... ...|++ .++++.+++++.++++ .|
T Consensus 360 dp~---------~aP~G~~~~~~~~-~~~~~~~~------~~~~~~--~k~~~~~~il~~l~~~~~p 408 (502)
T TIGR02734 360 DPS---------LAPPGCENLYVLA-PVPHLGTA------DVDWSV--EGPRYRDRILAYLEERAIP 408 (502)
T ss_pred CCC---------CCCCCCccEEEEE-eCCCCCCC------CCCcHH--HHHHHHHHHHHHHHHhcCC
Confidence 899 9999999887665 45653000 135877 5789999999999997 54
No 8
>KOG4254|consensus
Probab=99.96 E-value=3.4e-29 Score=234.98 Aligned_cols=183 Identities=16% Similarity=0.162 Sum_probs=126.3
Q ss_pred CCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCccc--c-----cc
Q psy2620 222 SPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQDR--V-----KK 293 (441)
Q Consensus 222 ~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~--~-----~~ 293 (441)
+.|.||+|||++++.++++.++++|++|.+++.|++|..++|+++||++ +|++++++.||+|++.|... + ..
T Consensus 254 g~~~Yp~GG~Gavs~aia~~~~~~GaeI~tka~Vq~Illd~gka~GV~L~dG~ev~sk~VvSNAt~~~Tf~kLlp~e~LP 333 (561)
T KOG4254|consen 254 GGWGYPRGGMGAVSFAIAEGAKRAGAEIFTKATVQSILLDSGKAVGVRLADGTEVRSKIVVSNATPWDTFEKLLPGEALP 333 (561)
T ss_pred CcccCCCCChhHHHHHHHHHHHhccceeeehhhhhheeccCCeEEEEEecCCcEEEeeeeecCCchHHHHHHhCCCccCC
Confidence 4799999999999999999999999999999999999999999999997 89999999999999887421 1 00
Q ss_pred cc----ceEEEEEEe-cCCCCCCC---------CCCeeEEEecCCCCCCCCcEEEEEec-CCccccCCCeEEEEEEeecc
Q psy2620 294 LN----QVIRCICLM-DHPIPNTK---------DALSCQIIIPQKQVNRKSDIYVSLVS-YTHQVSAKGWFIAMVSTTVE 358 (441)
Q Consensus 294 ~~----~~~~~~~~~-~~~~~~~~---------~~~~~~~~~p~~~~~~~~~i~~~~~~-~~~~~~p~g~~~~~i~t~~~ 358 (441)
.. +.--+.-++ ++.|.|.. .++...+++..++. ..++....+ +.--..+.+...+.|||.+
T Consensus 334 eef~i~q~d~~spv~k~~~psFl~~~~~~~~plph~~~~i~~~~ed~---~~~H~~v~D~~~gl~s~~pvI~~siPS~l- 409 (561)
T KOG4254|consen 334 EEFVIQQLDTVSPVTKDKLPSFLCLPNTKSLPLPHHGYTIHYNAEDT---QAHHRAVEDPRNGLASHRPVIELSIPSSL- 409 (561)
T ss_pred chhhhhhcccccccccccCcceeecCCCCCCCCCccceeEEecCchH---HHHHHHHhChhhcccccCCeEEEeccccc-
Confidence 00 110001111 23333322 12333333322211 011111111 1112345566678888887
Q ss_pred CCChhhchHHHHhhcccccceeeeeeeccccCC-CCCCCceeeccCCCCCCChHhHHHHHHHHHhhccC
Q psy2620 359 TDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTD-LGTESQIFISTSYDATTHFETVCTDVVNLFKRGTG 426 (441)
Q Consensus 359 ~~d~~~~l~~~l~~l~p~~~~~~~~~~~~~p~~-~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 426 (441)
||+ ++|+|+|++++|+||+|+. .++ ..+|+++ .++++++++++.++++.|
T Consensus 410 --Dpt---------lappg~Hvl~lf~~~t~~~w~g~------~~~eye~-~K~~~ae~~~~~ie~l~P 460 (561)
T KOG4254|consen 410 --DPT---------LAPPGKHVLHLFTQYTPEEWEGG------LKGEYET-KKEAFAERVFSVIEKLAP 460 (561)
T ss_pred --CCC---------cCCCCceEEEEeccCCccccccC------CcccchH-HHHHHHHHHHHHHHHHcC
Confidence 999 9999999999999999987 443 1236664 679999999999999865
No 9
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.96 E-value=2.2e-27 Score=241.86 Aligned_cols=357 Identities=18% Similarity=0.241 Sum_probs=216.4
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceee--
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLM-- 82 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~-- 82 (441)
|||||||||++||+||++|+++|++|+||||++.+||++++++ .. ||.|| .+++++.
T Consensus 1 ~dvvViGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~~~~-~~----G~~fd----------------~g~~~~~~~ 59 (493)
T TIGR02730 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAGYFE-RE----GYRFD----------------VGASMIFGF 59 (493)
T ss_pred CcEEEECCcHHHHHHHHHHHHCCCcEEEEECCCCCCCceeEec-cC----CEEEE----------------ecchhheec
Confidence 6999999999999999999999999999999999999999988 44 66554 3443332
Q ss_pred ----cCchHHHHHHHhCCcceeEEEEecce--EEEeCCeEEeCCCChHHHhhhccCChH--HHHHHHHHHHHHHhhcc--
Q psy2620 83 ----ANGSLVKLLIHTGVTRYLEFKSVEGS--YVFKGGKISKVPVDQKEALASDLMGLF--EKRRFRNFLVYIQEFSE-- 152 (441)
Q Consensus 83 ----~~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~g~~~~~p~~~~~~~~~~~~~~~--~k~~l~~~~~~~~~~~~-- 152 (441)
....+.+.+...+ ..+++...+.. +.+++|..+.++.+ .+.+.+.+...+ +...+.+|++.+.....
T Consensus 60 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~g~~~~~~~d-~~~~~~~l~~~~P~~~~~~~~~~~~~~~~~~~~ 136 (493)
T TIGR02730 60 GDKGTTNLLTRALAAVG--RKLETIPDPVQIHYHLPNGLNVKVHRE-YDDFIQELVAKFPHEKEGIRRFYDECWQVFNCL 136 (493)
T ss_pred CCcccccHHHHHHHHcC--CcccccCCCccEEEECCCCeeEeeecC-HHHHHHHHHHHCchhHHHHHHHHHHHHHHHHHH
Confidence 1122334444433 22444433322 34456766777777 466655544332 55667777766543211
Q ss_pred --------cCccccc------------ccCCCCCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHH
Q psy2620 153 --------ADPKTWK------------DINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLY 212 (441)
Q Consensus 153 --------~~~~~~~------------~~~~~~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (441)
..+..+. .......++.++++++..++.++.++...............|.... +.
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~l~~~l~~~~~~~~~~p~~~~p~~~~---~~-- 211 (493)
T TIGR02730 137 NSMELLSLEEPRYLFRVFFKHPLACLGLAKYLPQNAGDIARRYIRDPGLLKFIDIECFCWSVVPADQTPMINA---GM-- 211 (493)
T ss_pred HhhhhccccChHHHHHHHhhchhhhhHHHHHhhccHHHHHHHhcCCHHHHHHHHHHHHhccCCCcccchhhhH---HH--
Confidence 0010000 0001136777888888778888777653222221110011121111 11
Q ss_pred HHHhhhhCCCCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc--
Q psy2620 213 SDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD-- 289 (441)
Q Consensus 213 ~~s~~~~G~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~-- 289 (441)
.+..+..+++.+|.||++.++++|.+.++++|++|+++++|++|..+++++.+|++ +|+++.||.||++++.|..
T Consensus 212 --~~~~~~~~g~~~~~gG~~~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~g~~~~ad~vV~a~~~~~~~~ 289 (493)
T TIGR02730 212 --VFSDRHYGGINYPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRIVSNATRWDTFG 289 (493)
T ss_pred --hhcccccceEecCCChHHHHHHHHHHHHHHCCCEEEeCCeeeEEEecCCcEEEEEeCCCCEEEcCEEEECCChHHHHH
Confidence 11111223568899999999999999999999999999999999988889999997 6778999999998876421
Q ss_pred -----c-c-----------ccccceEEEEEEecCCCCCCCCCCeeEEEecCCCCCCCCcEEEEEecCCccccCCCeEEEE
Q psy2620 290 -----R-V-----------KKLNQVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAM 352 (441)
Q Consensus 290 -----~-~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~p~g~~~~~ 352 (441)
. + +...+.+.+++.++........ ....++++. +.....+.+...+.
T Consensus 290 ~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~-~~~~~~~~~---------------~~~~~~~~~~~~v~ 353 (493)
T TIGR02730 290 KLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGT-ECHHILLED---------------WTNLEKPQGTIFVS 353 (493)
T ss_pred HhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCCC-CccEEecch---------------hhccCCCCCeEEEE
Confidence 0 0 1123466777777764211110 111122211 11111234444455
Q ss_pred EEeeccCCChhhchHHHHhhcccccceeeeeeeccccCCCCCCCceeeccCCCCCCChHhHHHHHHHHHhhccC
Q psy2620 353 VSTTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNLFKRGTG 426 (441)
Q Consensus 353 i~t~~~~~d~~~~l~~~l~~l~p~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 426 (441)
+++.. ||+ ++|+|+|.+++++. .|... ..++- ...|++ .++++++++++.++++.|
T Consensus 354 ~ps~~---dps---------~aP~G~~~i~~~~~-~~~~~--w~~~~-~~~y~~--~k~~~~~~il~~l~~~~p 409 (493)
T TIGR02730 354 IPTLL---DPS---------LAPEGHHIIHTFTP-SSMED--WQGLS-PKDYEA--KKEADAERIIDRLEKIFP 409 (493)
T ss_pred eCCCC---CCC---------CCcCCcEEEEEecC-CChhh--ccCCC-cHHHHH--HHHHHHHHHHHHHHHHCC
Confidence 55554 899 99999998876542 22210 00000 124655 578899999999999965
No 10
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.95 E-value=1.1e-25 Score=229.58 Aligned_cols=348 Identities=13% Similarity=0.112 Sum_probs=199.4
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec-
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA- 83 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~- 83 (441)
.||||||||++||+||++|+++|++|+|||+++++||++++++ +. || .+|.+++++..
T Consensus 2 ~dvvIIGaG~~GL~aa~~La~~G~~v~vlE~~~~~GG~~~t~~-~~----G~----------------~fD~G~~~~~~~ 60 (492)
T TIGR02733 2 TSVVVIGAGIAGLTAAALLAKRGYRVTLLEQHAQPGGCAGTFR-RR----GF----------------TFDVGATQVAGL 60 (492)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCccceec-cC----CE----------------EEeecceEEEec
Confidence 5899999999999999999999999999999999999999988 44 44 45666666542
Q ss_pred --CchHHHHHHHhCCcceeEEEEecce--EEEeCC-eEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhh-------c
Q psy2620 84 --NGSLVKLLIHTGVTRYLEFKSVEGS--YVFKGG-KISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEF-------S 151 (441)
Q Consensus 84 --~~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~g-~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~-------~ 151 (441)
.+.+.+++.++++... .+...++. ..+++| ..+.++.+ .+.+.+.+...+... .+|+..+.+. .
T Consensus 61 ~~~~~~~~~~~~lg~~~~-~~~~~d~~~~~~~~dg~~~~~~~~d-~~~~~~~l~~~~p~~--~~~~~~~~~~~~~~~~~~ 136 (492)
T TIGR02733 61 EPGGIHARIFRELGIPLP-EAKILDPACAVDLPDGSEPIPLWHD-PDRWQKERERQFPGS--ERFWQLCSQLHQSNWRFA 136 (492)
T ss_pred CcCCHHHHHHHHcCCCCc-ccccCCCCcEEEECCCceEeeeecC-HHHHHHHHHHHCCCh--HHHHHHHHHHHHHHHHHh
Confidence 2345566777776421 12334433 345666 44555666 355544333222110 1122221110 0
Q ss_pred ccCc----c---cc------------cccCCCCCcHHHHHHHhC--CCcchhHHHHHHhhcccCccccchhHHHHHHHHH
Q psy2620 152 EADP----K---TW------------KDINPQSATTAQLYDKFG--LDPNTKDFTGHALALYRDDEYINDLAIHTIRRIK 210 (441)
Q Consensus 152 ~~~~----~---~~------------~~~~~~~~s~~~~l~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 210 (441)
...+ . .+ ........|+.+++++++ .++.++.++......+... .|.........
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~~~~~~~lr~~l~~~~~~~~~~----~~~~~~~~~~~ 212 (492)
T TIGR02733 137 GRDPVLPPRNYWDLLQLVSALRPDTLLTGPLSLLTVADLLRLCGLGDDRRLRRFLDLQLKLYSQE----DADETAALYGA 212 (492)
T ss_pred hcCCCCCCCCHHHHHHHHHhcChhhhhhhhhhhhhHHHHHHHhCCCccHHHHHHHHHHHhhhccC----ChhhhhHHHHH
Confidence 0000 0 00 000112477888888764 3556666664332222111 11111111100
Q ss_pred HHHHHhhhhCCCCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CC-----eEEEcCEEEECC
Q psy2620 211 LYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GT-----EIARCKQVYCDP 284 (441)
Q Consensus 211 ~~~~s~~~~G~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g-----~~~~a~~vI~~~ 284 (441)
.++ ... ....+..+++||++.|+++|++.++++|++|+++++|++|..+++++.+|.+ ++ +++.||+||++.
T Consensus 213 ~~~-~~~-~~~~G~~~~~GG~~~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~~~~~gv~~~~~~~~~~~~~~ad~VI~~~ 290 (492)
T TIGR02733 213 TVL-QMA-QAPHGLWHLHGSMQTLSDRLVEALKRDGGNLLTGQRVTAIHTKGGRAGWVVVVDSRKQEDLNVKADDVVANL 290 (492)
T ss_pred HHh-hcc-ccCCCceeecCcHHHHHHHHHHHHHhcCCEEeCCceEEEEEEeCCeEEEEEEecCCCCceEEEECCEEEECC
Confidence 011 111 1112456799999999999999999999999999999999998888777765 44 689999999976
Q ss_pred CCC------cc-----c----c---ccccceEEEEEEecCCCCCCCCCCeeEEEecCCCCCCCCcEEEEEecCCccccCC
Q psy2620 285 SYV------QD-----R----V---KKLNQVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAK 346 (441)
Q Consensus 285 ~~~------~~-----~----~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~p~ 346 (441)
++. +. . + +.....+.+++++++......... .+....+ +.
T Consensus 291 ~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~~----------------~~~~~~~------~~ 348 (492)
T TIGR02733 291 PPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCPP----------------HLQFLSD------HQ 348 (492)
T ss_pred CHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCCc----------------ceeeccC------CC
Confidence 642 11 1 1 112234456666665321100000 0001001 11
Q ss_pred CeEEEEEEeeccCCChhhchHHHHhhcccccceee--eeeeccccCCCCCCCceeeccCCCCCCChHhHHHHHHHHHhhc
Q psy2620 347 GWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFV--TVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNLFKRG 424 (441)
Q Consensus 347 g~~~~~i~t~~~~~d~~~~l~~~l~~l~p~~~~~~--~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 424 (441)
+ .++++... .||+ ++|+|++.+ ++++.|.|+.. .. ...|.+ .++++++++++.++++
T Consensus 349 ~--~~~v~~~~--~d~~---------~aP~G~~~l~~~~~~~~~~~~~-~~-----~~~y~~--~k~~~~~~il~~le~~ 407 (492)
T TIGR02733 349 G--SLFVSISQ--EGDG---------RAPQGEATLIASSFTDTNDWSS-LD-----EEDYTA--KKKQYTQTIIERLGHY 407 (492)
T ss_pred c--eEEEEeCC--cccc---------CCCCCceEEEEEcCCCHHHHcC-CC-----HHHHHH--HHHHHHHHHHHHHHHH
Confidence 2 23333221 2667 899999876 33444554421 00 124765 6788999999999999
Q ss_pred cC
Q psy2620 425 TG 426 (441)
Q Consensus 425 ~~ 426 (441)
.|
T Consensus 408 ~p 409 (492)
T TIGR02733 408 FD 409 (492)
T ss_pred CC
Confidence 76
No 11
>PRK07233 hypothetical protein; Provisional
Probab=99.89 E-value=1.3e-20 Score=189.60 Aligned_cols=250 Identities=19% Similarity=0.242 Sum_probs=150.6
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec-C
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA-N 84 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~-~ 84 (441)
+|||||||++||+||++|+++|++|+|||+++++||++.++. .+ |+. +|.+.+++.. .
T Consensus 1 ~vvVIGaGiaGL~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~----g~~----------------~d~g~~~~~~~~ 59 (434)
T PRK07233 1 KIAIVGGGIAGLAAAYRLAKRGHEVTVFEADDQLGGLAASFE-FG----GLP----------------IERFYHHIFKSD 59 (434)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEeCCCCCCceeeec-cC----Ccc----------------hhhhhhhhcccc
Confidence 589999999999999999999999999999999999999887 43 443 3444444433 3
Q ss_pred chHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCcccccccCCC
Q psy2620 85 GSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQ 164 (441)
Q Consensus 85 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~ 164 (441)
.++.+++.++++...+.+......+.+ +|..+.++.. ...+....+++.++..+......... ...+. ...
T Consensus 60 ~~~~~l~~~lg~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~--~~~ 130 (434)
T PRK07233 60 EALLELLDELGLEDKLRWRETKTGYYV-DGKLYPLGTP-LELLRFPHLSLIDKFRLGLLTLLARR-----IKDWR--ALD 130 (434)
T ss_pred HHHHHHHHHcCCCCceeeccCceEEEE-CCeEecCCCH-HHHHcCCCCCHHHHHHhHHHHHhhhh-----ccccc--ccc
Confidence 467788888888655554432222333 4554433221 22222122333333222211111111 00111 123
Q ss_pred CCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCCcchHHHHHHHHHHH
Q psy2620 165 SATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSAI 244 (441)
Q Consensus 165 ~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG~~~l~~~l~~~~~~ 244 (441)
..++.+|++++..++..+.++...+........-.-+....+..+..+...........+.+|+||++.++++|.+.++.
T Consensus 131 ~~s~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~ 210 (434)
T PRK07233 131 KVPAEEWLRRWSGEGVYEVFWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEA 210 (434)
T ss_pred cccHHHHHHHhcCHHHHHHHHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHHHHHHHHHHHHHh
Confidence 58899999887543333444433322211111001121111111111100000000124788999999999999999999
Q ss_pred cCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCC
Q psy2620 245 YGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPS 285 (441)
Q Consensus 245 ~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~ 285 (441)
.|++|+++++|++|..++++++++..+++++.||+||++.+
T Consensus 211 ~g~~v~~~~~V~~i~~~~~~~~~~~~~~~~~~ad~vI~a~p 251 (434)
T PRK07233 211 RGGEIRLGTPVTSVVIDGGGVTGVEVDGEEEDFDAVISTAP 251 (434)
T ss_pred cCceEEeCCCeeEEEEcCCceEEEEeCCceEECCEEEECCC
Confidence 99999999999999988887777777788999999998764
No 12
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.89 E-value=1.1e-20 Score=184.79 Aligned_cols=330 Identities=16% Similarity=0.191 Sum_probs=204.6
Q ss_pred cEEEECCChhHHHHHhhhccCC--CeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec
Q psy2620 6 DAIVLGTGLKECILSGMLSVSG--KKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA 83 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~ 83 (441)
.|+|||||++||+||++|+++| .+|+|||+.+++||..+|+. .+ .|.++.+|+.+..
T Consensus 2 ~i~IiG~GiaGLsaAy~L~k~~p~~~i~lfE~~~r~GG~l~T~~-~~--------------------G~~~e~G~~~f~~ 60 (444)
T COG1232 2 KIAIIGGGIAGLSAAYRLQKAGPDVEVTLFEADDRVGGLLRTVK-ID--------------------GFLFERGPHHFLA 60 (444)
T ss_pred eEEEECCcHHHHHHHHHHHHhCCCCcEEEEecCCCCCceEEEEe-eC--------------------CEEEeechhheec
Confidence 4899999999999999999999 99999999999999999988 44 3567778876655
Q ss_pred C-chHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCcccccccC
Q psy2620 84 N-GSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDIN 162 (441)
Q Consensus 84 ~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~ 162 (441)
. ...++++.++|+.+.+.+......|++.+|+++.+|....-.+.....+ +...+.+++..... +..+. +
T Consensus 61 ~~~~~l~li~eLGled~l~~~~~~~~~i~~~gkl~p~P~~~i~~ip~~~~~--~~~~~~~~~~~~~~-----~~~~~--~ 131 (444)
T COG1232 61 RKEEILDLIKELGLEDKLLWNSTARKYIYYDGKLHPIPTPTILGIPLLLLS--SEAGLARALQEFIR-----PKSWE--P 131 (444)
T ss_pred chHHHHHHHHHhCcHHhhccCCcccceEeeCCcEEECCccceeecCCcccc--chhHHHHHHHhhhc-----ccCCC--C
Confidence 5 6788999999998777655455557888999999998742222111111 22223333222211 11111 1
Q ss_pred CCCCcHHHHHHHhCCCcchhH-HHHHHhh-cccCccccch-hHHH----HHHHHHHHHHHhh---h--h-----CCCCee
Q psy2620 163 PQSATTAQLYDKFGLDPNTKD-FTGHALA-LYRDDEYIND-LAIH----TIRRIKLYSDSLA---R--Y-----GKSPYL 225 (441)
Q Consensus 163 ~~~~s~~~~l~~~~l~~~~~~-~~~~~~~-~~~~~~~~~~-~~~~----~l~~~~~~~~s~~---~--~-----G~~~~~ 225 (441)
..+.++.+|++++.- +++.+ ++...+. .+..+. +. +... ....-..+...+. + + ....|.
T Consensus 132 ~~d~sv~~f~r~~fG-~ev~~~~~~pll~giy~~~~--~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~ 208 (444)
T COG1232 132 KQDISVGEFIRRRFG-EEVVERFIEPLLEGIYAGDA--DKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFG 208 (444)
T ss_pred CCCcCHHHHHHHHHh-HHHHHHHHHHHhhchhcCCH--HHhhHHHhcchhhhhhhhhcchhhhhhhccCccccccccccc
Confidence 246899999976432 34443 4433332 221110 00 0000 0001111111110 0 0 112578
Q ss_pred eecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCC------ccc-----c--c
Q psy2620 226 YPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYV------QDR-----V--K 292 (441)
Q Consensus 226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~------~~~-----~--~ 292 (441)
+.+||+++++++|.+.+... |+++++|+.|..+......+..+|+++.||.||++.... ++. . .
T Consensus 209 ~~~gG~~~l~~al~~~l~~~---i~~~~~V~~i~~~~~~~~~~~~~g~~~~~D~VI~t~p~~~l~~ll~~~~~~~~~~~~ 285 (444)
T COG1232 209 YLRGGLQSLIEALAEKLEAK---IRTGTEVTKIDKKGAGKTIVDVGGEKITADGVISTAPLPELARLLGDEAVSKAAKEL 285 (444)
T ss_pred ccCccHHHHHHHHHHHhhhc---eeecceeeEEEEcCCccEEEEcCCceEEcceEEEcCCHHHHHHHcCCcchhhhhhhc
Confidence 89999999999999888765 999999999998755555566688899999999976532 110 0 1
Q ss_pred cccceEEEEEEecCCCCCCCCCCeeEEEecCCCCCCCCcEEEEEecCCccccCCCeEEEEEEeeccC------CChhhch
Q psy2620 293 KLNQVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVET------DNPELEI 366 (441)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~~~~~~~p~g~~~~~i~t~~~~------~d~~~~l 366 (441)
....+.-+++++++... ...++..++.+|..+.. ...+ +..++......|+|+.+++++-.... ..+++.+
T Consensus 286 ~~~s~~~vv~~~~~~~~-~~~~~~~g~~iad~~~~-~~a~-~~~S~~~p~~~p~g~~ll~~~~~~~g~~~~~~~~dee~~ 362 (444)
T COG1232 286 QYTSVVTVVVGLDEKDN-PALPDGYGLLIADDDPY-ILAI-TFHSNKWPHEAPEGKTLLRVEFGGPGDESVSTMSDEELV 362 (444)
T ss_pred cccceEEEEEEeccccc-cCCCCceEEEEecCCCc-ceeE-EEecccCCCCCCCCcEEEEEEeecCCCcchhccCHHHHH
Confidence 13345667777877522 22346778888876421 1111 33345566788999988887643221 1246677
Q ss_pred HHHHhhcc
Q psy2620 367 KPGLDLLG 374 (441)
Q Consensus 367 ~~~l~~l~ 374 (441)
+.+++.|.
T Consensus 363 ~~~l~~L~ 370 (444)
T COG1232 363 AAVLDDLK 370 (444)
T ss_pred HHHHHHHH
Confidence 78877773
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.88 E-value=9.8e-20 Score=184.74 Aligned_cols=377 Identities=10% Similarity=0.061 Sum_probs=213.2
Q ss_pred cccEEEECCChhHHHHHhhhccC----CCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVS----GKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPK 79 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~ 79 (441)
+.||+|||||++||+||++|+++ |++|+|||+++++||+++|.+ .. .+.+|++|+
T Consensus 2 ~~~v~VIGaGiaGL~aA~~L~~~~~~~g~~v~vlE~~~r~GG~~~t~~-~~--------------------g~~~e~G~~ 60 (462)
T TIGR00562 2 KKHVVIIGGGISGLCAAYYLEKEIPELPVELTLVEASDRVGGKIQTVK-ED--------------------GYLIERGPD 60 (462)
T ss_pred CceEEEECCCHHHHHHHHHHHhcCCCCCCcEEEEEcCCcCcceEEEEe-eC--------------------CEEEecCcc
Confidence 36999999999999999999999 999999999999999999877 32 356788898
Q ss_pred eeecCc-hHHHHHHHhCCcceeEEEEecceEEEeC-CeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCccc
Q psy2620 80 FLMANG-SLVKLLIHTGVTRYLEFKSVEGSYVFKG-GKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKT 157 (441)
Q Consensus 80 ~l~~~~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~-g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~ 157 (441)
++.... .+.+++.++++...+........+++.+ |+.+.+|.+..+.+...+.++.++-... +.. +....
T Consensus 61 ~~~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~--- 132 (462)
T TIGR00562 61 SFLERKKSAPDLVKDLGLEHVLVSDATGQRYVLVNRGKLMPVPTKIAPFVKTGLFSLGGKLRAG--MDF---IRPAS--- 132 (462)
T ss_pred ccccCChHHHHHHHHcCCCcccccCCCCceEEEECCCceecCCCChHHHhcCCCCCchhhHHhh--hhh---ccCCC---
Confidence 887665 4788888888866543312223344544 8888888765454444444443332211 111 11100
Q ss_pred ccccCCCCCcHHHHHHHhCCCcchhH-HHHHHhhcccCccccchhHHHHHH----HHHH-------HHHHh---h-----
Q psy2620 158 WKDINPQSATTAQLYDKFGLDPNTKD-FTGHALALYRDDEYINDLAIHTIR----RIKL-------YSDSL---A----- 217 (441)
Q Consensus 158 ~~~~~~~~~s~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~----~~~~-------~~~s~---~----- 217 (441)
...+.++.+|+++..- +.+.+ ++.....- -+..++....+. .+.. ....+ .
T Consensus 133 ----~~~d~s~~e~l~~~~g-~~~~~~~~~p~~~~----~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~ 203 (462)
T TIGR00562 133 ----PGKDESVEEFVRRRFG-DEVVENLIEPLLSG----IYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQG 203 (462)
T ss_pred ----CCCCcCHHHHHHHhcC-HHHHHHHHHHHhcc----cccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCcc
Confidence 1124899999986533 33333 33222221 111122211111 1100 00000 0
Q ss_pred ----hh--CCC-CeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCC---
Q psy2620 218 ----RY--GKS-PYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSY--- 286 (441)
Q Consensus 218 ----~~--G~~-~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~--- 286 (441)
.| +.+ .+..+.||++.|+++|++.+. .++|+++++|++|..+++++ .|++ +|+++.||+||++...
T Consensus 204 ~~~~~~~~~~~~~~~~~~gG~~~l~~~l~~~l~--~~~i~~~~~V~~I~~~~~~~-~v~~~~g~~~~ad~VI~t~P~~~~ 280 (462)
T TIGR00562 204 SGLQLTAKKQGQDFQTLATGLETLPEEIEKRLK--LTKVYKGTKVTKLSHRGSNY-TLELDNGVTVETDSVVVTAPHKAA 280 (462)
T ss_pred ccccccccccCCceEecchhHHHHHHHHHHHhc--cCeEEcCCeEEEEEecCCcE-EEEECCCcEEEcCEEEECCCHHHH
Confidence 01 111 267789999999999987764 27899999999998766553 4555 5678999999986542
Q ss_pred ---Cc---cc----cc--cccceEEEEEEecCCCCCCCCCCeeEEEecCCCCCCCCcEEEEEe-cCCccccCCCeEEEEE
Q psy2620 287 ---VQ---DR----VK--KLNQVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLV-SYTHQVSAKGWFIAMV 353 (441)
Q Consensus 287 ---~~---~~----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~-~~~~~~~p~g~~~~~i 353 (441)
++ .. +. ....+.++.+.++++. +.....+..++.|..+.. ..+.+... +.....+|.|..++.+
T Consensus 281 ~~ll~~~~~~~~~~l~~l~~~~~~~v~l~~~~~~-~~~~~~~~g~l~~~~~~~--~~~~~i~~s~~~p~~~p~g~~~l~~ 357 (462)
T TIGR00562 281 AGLLSELSNSASSHLDKIHSPPVANVNLGFPEGS-VDGELEGFGFLISRSSKF--AILGCIFTSKLFPNRAPPGKTLLTA 357 (462)
T ss_pred HHHhcccCHHHHHHHhcCCCCceEEEEEEEchHH-cCCCCCceEEEccCCCCC--ceEEEEEEccccCCcCCCCcEEEEE
Confidence 11 11 11 2466788888887642 222223444555543211 12222223 3334667888765433
Q ss_pred Eeecc------CCChhhchHHHHhhcc--------cccceeeee---eeccccCC-C----------CCCCceeeccCCC
Q psy2620 354 STTVE------TDNPELEIKPGLDLLG--------SYKKKFVTV---SDYYEPTD-L----------GTESQIFISTSYD 405 (441)
Q Consensus 354 ~t~~~------~~d~~~~l~~~l~~l~--------p~~~~~~~~---~~~~~p~~-~----------g~~~~~~~~~~~~ 405 (441)
..... ..++++.++.+++.|. |..-++..+ +.+|.+-. + ...++++++.+|-
T Consensus 358 ~~~g~~~~~~~~~~~ee~~~~v~~~L~~~~gi~~~p~~~~v~rw~~a~P~~~~g~~~~~~~i~~~l~~~~~~l~l~G~~~ 437 (462)
T TIGR00562 358 YIGGATDESIVDLSENEIINIVLRDLKKVLNINNEPEMLCVTRWHRAIPQYHVGHDQRLKEARELLESAYPGVFLTGNSF 437 (462)
T ss_pred EeCCCCCccccCCCHHHHHHHHHHHHHHHhCCCCCCcEEEEeEccccCCCCCCChHHHHHHHHHHHHhhCCCEEEecccc
Confidence 22111 1244555666666652 211111111 12333311 0 1134888888885
Q ss_pred CCCChHhHHHHHHHHHhhc
Q psy2620 406 ATTHFETVCTDVVNLFKRG 424 (441)
Q Consensus 406 ~~~~~~~~~~~v~~~~~~~ 424 (441)
.....+.......+.-+++
T Consensus 438 ~g~~i~~~i~sg~~~a~~~ 456 (462)
T TIGR00562 438 EGVGIPDCIDQGKAAASDV 456 (462)
T ss_pred CCCcHHHHHHHHHHHHHHH
Confidence 5545666666655555554
No 14
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.88 E-value=7.1e-20 Score=185.66 Aligned_cols=281 Identities=13% Similarity=0.183 Sum_probs=166.1
Q ss_pred cEEEECCChhHHHHHhhhccC------CCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccc
Q psy2620 6 DAIVLGTGLKECILSGMLSVS------GKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPK 79 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~------G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~ 79 (441)
+|+|||||++||+||+.|+++ |++|+|||+++++||+++|.+ .. .+.+|++++
T Consensus 3 ~v~VIGaGisGL~aA~~L~~~~~~~~~~~~V~vlEa~~r~GGr~~T~~-~~--------------------g~~~e~G~~ 61 (463)
T PRK12416 3 TVVVIGGGITGLSTMFYLEKLKKDYNIDLNLILVEKEEYLGGKIHSVE-EK--------------------DFIMESGAD 61 (463)
T ss_pred eEEEECCCHHHHHHHHHHHhhhhccCCCccEEEEecCCCccceEEEEe-eC--------------------CEEEecCcH
Confidence 699999999999999999986 379999999999999999987 32 356788898
Q ss_pred eeecC-chHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCCh--------HHHhhhccCChHHHHHHHHHHHHHHhh
Q psy2620 80 FLMAN-GSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQ--------KEALASDLMGLFEKRRFRNFLVYIQEF 150 (441)
Q Consensus 80 ~l~~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~--------~~~~~~~~~~~~~k~~l~~~~~~~~~~ 150 (441)
++... ..+.+++.++|+...+.+......+++.+|..+.+|.+. .+.+...+++...+ +..+....
T Consensus 62 ~i~~~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~--~~~~~~~~--- 136 (463)
T PRK12416 62 SIVARNEHVMPLVKDLNLEEEMVYNETGISYIYSDNTLHPIPSDTIFGIPMSVESLFSSTLVSTKGK--IVALKDFI--- 136 (463)
T ss_pred HHhcCCHHHHHHHHHcCCccceecCCCCceEEEECCeEEECCCCCeecCCCChHHhhcCCcCCHHHH--HHhhhhhc---
Confidence 88655 456788899998765443333344555566666665431 12222222322221 11111111
Q ss_pred cccCcccccccCCCCCcHHHHHHHhCCCcchh-HHHHHHhh-cccCccccchhHHHHHHHHHHH-------HHHh----h
Q psy2620 151 SEADPKTWKDINPQSATTAQLYDKFGLDPNTK-DFTGHALA-LYRDDEYINDLAIHTIRRIKLY-------SDSL----A 217 (441)
Q Consensus 151 ~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~-------~~s~----~ 217 (441)
. .. .. . .+..|+.+|+++.. .+++. .++...+. .+..+. -.-+....+..+..+ +..+ .
T Consensus 137 ~-~~-~~---~-~~~~sv~~~l~~~~-~~~~~~~~~~p~~~~~~~~~~-~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~ 208 (463)
T PRK12416 137 T-KN-KE---F-TKDTSLALFLESFL-GKELVERQIAPVLSGVYSGKL-NELTMASTLPYLLDYKNKYGSIIKGFEENKK 208 (463)
T ss_pred c-CC-CC---C-CCCCCHHHHHHHhc-CHHHHHHHHHHHhcccccCCc-ccccHHHhhHHHHHHHHhcCcHHHHHHHhhh
Confidence 1 00 00 1 14589999998753 33333 33332222 122110 000111111111111 1111 0
Q ss_pred h---hCCCCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCC------
Q psy2620 218 R---YGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYV------ 287 (441)
Q Consensus 218 ~---~G~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~------ 287 (441)
. .+...+.+++||++.|+++|++.+.. ++|+++++|++|..+++++ .|.+ +|+++.||+||++....
T Consensus 209 ~~~~~~~~~~~~~~gG~~~l~~~l~~~l~~--~~i~~~~~V~~I~~~~~~~-~v~~~~g~~~~ad~VI~a~p~~~~~~ll 285 (463)
T PRK12416 209 QFQSAGNKKFVSFKGGLSTIIDRLEEVLTE--TVVKKGAVTTAVSKQGDRY-EISFANHESIQADYVVLAAPHDIAETLL 285 (463)
T ss_pred ccCCCCCCceEeeCCCHHHHHHHHHHhccc--ccEEcCCEEEEEEEcCCEE-EEEECCCCEEEeCEEEECCCHHHHHhhc
Confidence 0 12235788999999999999887754 6899999999999877764 5554 67789999999875421
Q ss_pred c-c----ccc--cccceEEEEEEecCCCCCCCCCCeeEEEecCC
Q psy2620 288 Q-D----RVK--KLNQVIRCICLMDHPIPNTKDALSCQIIIPQK 324 (441)
Q Consensus 288 ~-~----~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 324 (441)
+ + .+. ....+.++++.++++.... ......+++|+.
T Consensus 286 ~~~~l~~~~~~~~~~~~~~v~l~~~~~~~~~-~~~g~G~l~~~~ 328 (463)
T PRK12416 286 QSNELNEQFHTFKNSSLISIYLGFDILDEQL-PADGTGFIVTEN 328 (463)
T ss_pred CCcchhHHHhcCCCCceEEEEEEechhhcCC-CCCceEEEeeCC
Confidence 0 1 111 1356788888888653221 123445566654
No 15
>PRK07208 hypothetical protein; Provisional
Probab=99.88 E-value=5.7e-20 Score=187.23 Aligned_cols=249 Identities=16% Similarity=0.129 Sum_probs=151.0
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccce
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKF 80 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~ 80 (441)
|++..||||||||++||+||++|+++|++|+|+|+++++||++.|.. .. .+.+|.++++
T Consensus 1 ~~~~~~vvIiGaGisGL~aA~~L~~~g~~v~v~E~~~~~GG~~~s~~-~~--------------------g~~~d~G~h~ 59 (479)
T PRK07208 1 MTNKKSVVIIGAGPAGLTAAYELLKRGYPVTVLEADPVVGGISRTVT-YK--------------------GNRFDIGGHR 59 (479)
T ss_pred CCCCCcEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCceeeeec-cC--------------------CceEccCCce
Confidence 78889999999999999999999999999999999999999998876 32 3456778887
Q ss_pred eecCc-hHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCccccc
Q psy2620 81 LMANG-SLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWK 159 (441)
Q Consensus 81 l~~~~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~ 159 (441)
+.... .+.+++.+.+....+... ....+.+.+|+...+|.+..+.+. .+++..+ +........... .+
T Consensus 60 ~~~~~~~~~~l~~~l~~~~~~~~~-~~~~~~~~~g~~~~~p~~~~~~l~--~~~~~~~--~~~~~~~~~~~~--~~---- 128 (479)
T PRK07208 60 FFSKSPEVMDLWNEILPDDDFLLR-PRLSRIYYRGKFFDYPLKAFDALK--NLGLWRT--AKCGASYLKARL--RP---- 128 (479)
T ss_pred eccCCHHHHHHHHHhcCCCccccc-cccceEEECCEEecCCcchhHHHH--hCCHhHH--HHHHHHHHHHhc--CC----
Confidence 76554 567778887653322211 122234457888777766323321 1233222 111111211110 00
Q ss_pred ccCCCCCcHHHHHHHhCCCcchh-HHHHHHh-hcccCccccchhHHHHH--------H-HHHHHHHHh-h-------hhC
Q psy2620 160 DINPQSATTAQLYDKFGLDPNTK-DFTGHAL-ALYRDDEYINDLAIHTI--------R-RIKLYSDSL-A-------RYG 220 (441)
Q Consensus 160 ~~~~~~~s~~~~l~~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l--------~-~~~~~~~s~-~-------~~G 220 (441)
..+..++.+|+.+..- +.+. .++.... ..+..+.. .-+....+ . .+...+... + ..+
T Consensus 129 --~~~~~s~~e~l~~~~g-~~~~~~~~~p~~~~~~~~~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (479)
T PRK07208 129 --RKEEDSFEDWVINRFG-RRLYSTFFKGYTEKVWGVPCD-EISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVET 204 (479)
T ss_pred --CCCCCCHHHHHHHhhC-HHHHHHHHHHhhhhhhCCChH-HCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccc
Confidence 0135899999986432 3333 3332222 22221100 00110000 0 011111110 0 001
Q ss_pred --CCCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCE-EEEEEe---CC--eEEEcCEEEECCC
Q psy2620 221 --KSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGK-VVGVRS---GT--EIARCKQVYCDPS 285 (441)
Q Consensus 221 --~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~~v~~---~g--~~~~a~~vI~~~~ 285 (441)
...+.+|+||++.++++|.+.++..|++|+++++|++|..++++ ++++.. +| .++.||+||++..
T Consensus 205 ~~~~~~~~p~gG~~~l~~~L~~~l~~~g~~i~~~~~V~~I~~~~~~~v~~~~~~~~~g~~~~~~ad~VI~a~p 277 (479)
T PRK07208 205 SLIEEFRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAVVVVNDTDGTEETVTADQVISSMP 277 (479)
T ss_pred cceeEEeCCCCCcchHHHHHHHHHHHcCCEEEeCCEEEEEEEcCCcEEEEEEEEcCCCCEEEEEcCEEEECCC
Confidence 12578999999999999999999999999999999999987654 444443 34 3699999999754
No 16
>PLN02576 protoporphyrinogen oxidase
Probab=99.86 E-value=1.2e-18 Score=178.20 Aligned_cols=267 Identities=15% Similarity=0.160 Sum_probs=163.4
Q ss_pred CcccEEEECCChhHHHHHhhhccC-CCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeeccccee
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVS-GKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFL 81 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l 81 (441)
.++||+|||||++||+||++|+++ |++|+|||+++++||++.|.+ .. .|.+|.+|+++
T Consensus 11 ~~~~v~IIGaGisGL~aA~~L~~~~g~~v~vlEa~~rvGGr~~t~~-~~--------------------g~~~d~G~~~~ 69 (496)
T PLN02576 11 SSKDVAVVGAGVSGLAAAYALASKHGVNVLVTEARDRVGGNITSVS-ED--------------------GFIWEEGPNSF 69 (496)
T ss_pred CCCCEEEECcCHHHHHHHHHHHHhcCCCEEEEecCCCCCCceeEec-cC--------------------CeEEecCCchh
Confidence 357999999999999999999999 999999999999999999987 33 35678889888
Q ss_pred ecCchHHHHHHHhCCcceeEEEEe-cceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCcccccc
Q psy2620 82 MANGSLVKLLIHTGVTRYLEFKSV-EGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKD 160 (441)
Q Consensus 82 ~~~~~~~~~l~~~~~~~~l~~~~~-~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~ 160 (441)
....+.+..+.+.++..++.+... ...+++.+|+++.+|.+..+.+...++++.++-.+. .....+....+
T Consensus 70 ~~~~~~~~~l~~~gl~~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~----- 141 (496)
T PLN02576 70 QPSDPELTSAVDSGLRDDLVFPDPQAPRYVVWNGKLRPLPSNPIDLPTFDLLSAPGKIRAG---LGAFGWKRPPP----- 141 (496)
T ss_pred ccCcHHHHHHHHcCChhheecCCCCceEEEEECCEEEEcCCChHHhcCcCcCChhHHHHHh---HHHhhccCCCC-----
Confidence 877666666666677666554332 223566788888888875444444555554443221 11111100000
Q ss_pred cCCCCCcHHHHHHHhCCCcchhH-HHHHHhhcccCccccchhHHHHHH----HHHH-----------HHHHh-h------
Q psy2620 161 INPQSATTAQLYDKFGLDPNTKD-FTGHALALYRDDEYINDLAIHTIR----RIKL-----------YSDSL-A------ 217 (441)
Q Consensus 161 ~~~~~~s~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~----~~~~-----------~~~s~-~------ 217 (441)
.....|+.+|+++. +.+++.+ ++...+.- .+..++...... .+.. .+... .
T Consensus 142 -~~~~~sv~~~l~~~-~g~~~~~~~~~p~~~~----~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~ 215 (496)
T PLN02576 142 -PGREESVGEFVRRH-LGDEVFERLIDPFVSG----VYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPK 215 (496)
T ss_pred -CCCCCcHHHHHHHh-cCHHHHHHHHHHHhCc----eecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhccccc
Confidence 11458999999875 4444443 33322221 111122211111 1110 00000 0
Q ss_pred ---------hhCCCCeeeecCCcchHHHHHHHHHHHcC-cEEEcccceeEEEEeCCEEEEEE--e-CC-eEEEcCEEEEC
Q psy2620 218 ---------RYGKSPYLYPMYGLGELPQSFARLSAIYG-GTYMLDKPVDEIVIENGKVVGVR--S-GT-EIARCKQVYCD 283 (441)
Q Consensus 218 ---------~~G~~~~~~~~gG~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~v~--~-~g-~~~~a~~vI~~ 283 (441)
..+.......+||++.|+++|++.+ + ++|++|++|++|..+++..+.|. . +| +++.||+||++
T Consensus 216 ~~~~~~~~~~~~~~~~~~~~gG~~~L~~~la~~l---~~~~i~l~~~V~~I~~~~~~~~~v~~~~~~g~~~~~ad~VI~a 292 (496)
T PLN02576 216 PEPRDPRLPKPKGQTVGSFRGGLQTLPDALAKRL---GKDKVKLNWKVLSLSKNDDGGYSLTYDTPEGKVNVTAKAVVMT 292 (496)
T ss_pred ccccccccccccCCeeEeccchHHHHHHHHHHhh---CcCcEEcCCEEEEEEECCCCcEEEEEecCCCceeEEeCEEEEC
Confidence 0011235667899999999997654 5 68999999999988655422333 2 34 47999999986
Q ss_pred CCCC------c---cc----cc--cccceEEEEEEecCC
Q psy2620 284 PSYV------Q---DR----VK--KLNQVIRCICLMDHP 307 (441)
Q Consensus 284 ~~~~------~---~~----~~--~~~~~~~~~~~~~~~ 307 (441)
...- + .. +. ....+.++++.++++
T Consensus 293 ~P~~~l~~ll~~~~~~~~~~l~~~~~~~~~~v~l~~~~~ 331 (496)
T PLN02576 293 APLYVVSEMLRPKSPAAADALPEFYYPPVAAVTTSYPKE 331 (496)
T ss_pred CCHHHHHHHhcccCHHHHHHhccCCCCceEEEEEEEchH
Confidence 5321 1 11 11 135567777777764
No 17
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.86 E-value=5.1e-19 Score=178.99 Aligned_cols=327 Identities=14% Similarity=0.156 Sum_probs=180.7
Q ss_pred cEEEECCChhHHHHHhhhccCC--CeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec
Q psy2620 6 DAIVLGTGLKECILSGMLSVSG--KKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA 83 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G--~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~ 83 (441)
+|+|||||++||+||++|+++| ++|+|||+++++||+++|.+ .. .+.+|++++++..
T Consensus 2 ~v~IVGaGiaGL~aA~~L~~~G~~~~V~vlEa~~~~GGr~~t~~-~~--------------------g~~~d~G~~~~~~ 60 (451)
T PRK11883 2 KVAIIGGGITGLSAAYRLHKKGPDADITLLEASDRLGGKIQTVR-KD--------------------GFPIELGPESFLA 60 (451)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCCEEEEEcCCCCcceEEEEe-eC--------------------CeEEecChHHhcC
Confidence 6999999999999999999988 89999999999999999987 33 3457778876554
Q ss_pred Cc-hHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChH--------HHhhhccCChHHHHHHHHHHHHHHhhcccC
Q psy2620 84 NG-SLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQK--------EALASDLMGLFEKRRFRNFLVYIQEFSEAD 154 (441)
Q Consensus 84 ~~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~--------~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~ 154 (441)
.+ .+.+++.++++............+++.+|+.+.+|.... ..+...+.+..++.. ....+.
T Consensus 61 ~~~~~~~l~~~lgl~~~~~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~--- 131 (451)
T PRK11883 61 RKPSAPALVKELGLEDELVANTTGQSYIYVNGKLHPIPPGTVMGIPTSIAPFLFAGLVSPIGKLR------AAADLR--- 131 (451)
T ss_pred CcHHHHHHHHHcCCccceecCCCCcceEEECCeEEECCCCCeeccCCCchhhhcCCCCCHHHHHH------hhCccc---
Confidence 43 577888888876543322112235666777776664310 101111122111110 001110
Q ss_pred cccccccCCCCCcHHHHHHHhCCCcchh-HHHHHHh-hcccCccccchhHHHHHHHHHHHH-------HHh----hh---
Q psy2620 155 PKTWKDINPQSATTAQLYDKFGLDPNTK-DFTGHAL-ALYRDDEYINDLAIHTIRRIKLYS-------DSL----AR--- 218 (441)
Q Consensus 155 ~~~~~~~~~~~~s~~~~l~~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~-------~s~----~~--- 218 (441)
...+. ...+.++.+|+++. +++... .++.... .++..+ ...-+....+..+..+. ..+ ..
T Consensus 132 ~~~~~--~~~~~s~~e~l~~~-~~~~~~~~~~~~~~~~~~~~~-~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (451)
T PRK11883 132 PPRWK--PGQDQSVGAFFRRR-FGDEVVENLIEPLLSGIYAGD-IDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKK 207 (451)
T ss_pred CCCCC--CCCCcCHHHHHHHh-ccHHHHHHHHHHhhceeecCC-hHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCC
Confidence 00011 12458999999764 444343 3332222 122111 00011111111111111 111 00
Q ss_pred hCCCCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCC-------ccc
Q psy2620 219 YGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYV-------QDR 290 (441)
Q Consensus 219 ~G~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~-------~~~ 290 (441)
.....+.+++||++.++++|++.+... +|+++++|++|..+++.+ .|.. +|+++.||+||++.... ++.
T Consensus 208 ~~~~~~~~~~~G~~~l~~~l~~~l~~~--~i~~~~~V~~i~~~~~~~-~v~~~~g~~~~~d~vI~a~p~~~~~~l~~~~~ 284 (451)
T PRK11883 208 KTKGVFGTLKGGLQSLIEALEEKLPAG--TIHKGTPVTKIDKSGDGY-EIVLSNGGEIEADAVIVAVPHPVLPSLFVAPP 284 (451)
T ss_pred CCCCceEeeccHHHHHHHHHHHhCcCC--eEEeCCEEEEEEEcCCeE-EEEECCCCEEEcCEEEECCCHHHHHHhccChh
Confidence 112356789999999999998766433 899999999998876654 4554 77889999999875421 111
Q ss_pred ----cc--cccceEEEEEEecCCCCCCCCCCeeEEEecCCCCCCCCcEEEEEec-CCccccCCCeEEEEEEeecc-----
Q psy2620 291 ----VK--KLNQVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVS-YTHQVSAKGWFIAMVSTTVE----- 358 (441)
Q Consensus 291 ----~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~i~~~~~~-~~~~~~p~g~~~~~i~t~~~----- 358 (441)
+. ....+.++++.++++..+ ......+++++.+. .....+...+ .....+|.|..++.......
T Consensus 285 ~~~~~~~~~~~~~~~v~l~~~~~~~~--~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~~~p~g~~~~~~~~~~~~~~~~ 360 (451)
T PRK11883 285 AFALFKTIPSTSVATVALAFPESATN--LPDGTGFLVARNSD--YTITACTWTSKKWPHTTPEGKVLLRLYVGRPGDEAV 360 (451)
T ss_pred HHHHHhCCCCCceEEEEEEeccccCC--CCCceEEEecCCCC--CcEEEEEeEcCcCCCCCCCCcEEEEEecCCCCCchh
Confidence 11 245678888888876311 12234455553321 1111122222 22355677876655543211
Q ss_pred -CCChhhchHHHHhhc
Q psy2620 359 -TDNPELEIKPGLDLL 373 (441)
Q Consensus 359 -~~d~~~~l~~~l~~l 373 (441)
..++++.++.+++.|
T Consensus 361 ~~~~~~~~~~~~~~~L 376 (451)
T PRK11883 361 VDATDEELVAFVLADL 376 (451)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 123444555555555
No 18
>PLN02612 phytoene desaturase
Probab=99.79 E-value=2.2e-17 Score=170.24 Aligned_cols=275 Identities=14% Similarity=0.148 Sum_probs=166.8
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA 83 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~ 83 (441)
..+|+|||+|++||+||++|+++|++|+|+|+++++||.+.++. .. ..+.+|.+++++..
T Consensus 93 ~~~v~iiG~G~~Gl~~a~~l~~~g~~~~~~e~~~~~gG~~~s~~-~~-------------------~G~~~D~G~h~~~g 152 (567)
T PLN02612 93 PLKVVIAGAGLAGLSTAKYLADAGHKPILLEARDVLGGKVAAWK-DE-------------------DGDWYETGLHIFFG 152 (567)
T ss_pred CCCEEEECCCHHHHHHHHHHHhcCCeEEEEecCCCCCCcceeeE-cC-------------------CCCEEcCCceEEeC
Confidence 47899999999999999999999999999999999999998876 21 12456777777664
Q ss_pred C-chHHHHHHHhCCcceeEEEEecceEEEe--CCeEEe--CC----CC---hHHHhh-hccCChHHHHHHHHHHHHHHhh
Q psy2620 84 N-GSLVKLLIHTGVTRYLEFKSVEGSYVFK--GGKISK--VP----VD---QKEALA-SDLMGLFEKRRFRNFLVYIQEF 150 (441)
Q Consensus 84 ~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~--~g~~~~--~p----~~---~~~~~~-~~~~~~~~k~~l~~~~~~~~~~ 150 (441)
. ..+.+++.++|+...+++......+.+. .+.... .| .. ..+.+. ...+++.++..+.. ......
T Consensus 153 ~~~~~~~ll~elG~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~P~~l~~~~~~l~~~~~ls~~~kl~~~~--~~~~~~ 230 (567)
T PLN02612 153 AYPNVQNLFGELGINDRLQWKEHSMIFAMPNKPGEFSRFDFPEVLPAPLNGIWAILRNNEMLTWPEKIKFAI--GLLPAI 230 (567)
T ss_pred CCchHHHHHHHhCCcccceecccceEEEecCCCCceeeCcCchhcCChhhhhHHHHhcCccCCHHHHHHHHH--hhhHHh
Confidence 4 4577889999987766665443333332 222222 12 11 011111 11223333222111 000000
Q ss_pred cccCcccccccCCCCCcHHHHHHHhCCCcchhH-HHHHHh-hcccCccccchhHHHHHHHHHHHHHHh-hhhCCCCeeee
Q psy2620 151 SEADPKTWKDINPQSATTAQLYDKFGLDPNTKD-FTGHAL-ALYRDDEYINDLAIHTIRRIKLYSDSL-ARYGKSPYLYP 227 (441)
Q Consensus 151 ~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~s~-~~~G~~~~~~~ 227 (441)
... ...+. ..+..|+.+|+++.+.++.+.+ ++..++ ++.. .+|....+..+...+... ...+.+...++
T Consensus 231 ~~~-~~~~~--~~d~~Sv~e~l~~~~~~~~~~~~~~~~l~~~~~~-----~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~ 302 (567)
T PLN02612 231 VGG-QAYVE--AQDGLSVKEWMRKQGVPDRVNDEVFIAMSKALNF-----INPDELSMQCILIALNRFLQEKHGSKMAFL 302 (567)
T ss_pred ccc-chhhh--hcCcCcHHHHHHhcCCCHHHHHHHHHHHHHHhcC-----CCHHHhhHHHHHHHHHHHHhccCCceEeee
Confidence 000 00111 1246899999999998876664 443332 2221 123222222222211111 11122345667
Q ss_pred cCCc-chHHHHHHHHHHHcCcEEEcccceeEEEE-eCCEEEEEEe-CCeEEEcCEEEECCCC------Cccc--------
Q psy2620 228 MYGL-GELPQSFARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRS-GTEIARCKQVYCDPSY------VQDR-------- 290 (441)
Q Consensus 228 ~gG~-~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~~-~g~~~~a~~vI~~~~~------~~~~-------- 290 (441)
.|+. ..++++|++.++..|++|+++++|++|.. +++++++|++ +|+++.||+||++... ++..
T Consensus 303 ~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~g~v~~v~~~~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~ 382 (567)
T PLN02612 303 DGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDDGTVKHFLLTNGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFK 382 (567)
T ss_pred cCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCCCcEEEEEECCCcEEECCEEEECCCHHHHHHhCcchhcCcHHHH
Confidence 7774 68999999999899999999999999988 4666777776 7888999999986532 1110
Q ss_pred -cc--cccceEEEEEEecCCC
Q psy2620 291 -VK--KLNQVIRCICLMDHPI 308 (441)
Q Consensus 291 -~~--~~~~~~~~~~~~~~~~ 308 (441)
+. ....++++++.++++.
T Consensus 383 ~l~~l~~~~v~~v~l~~dr~~ 403 (567)
T PLN02612 383 KLDKLVGVPVINVHIWFDRKL 403 (567)
T ss_pred HHHhcCCCCeEEEEEEECccc
Confidence 11 1345888999999885
No 19
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.79 E-value=1.9e-17 Score=167.40 Aligned_cols=272 Identities=18% Similarity=0.165 Sum_probs=161.3
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecC-
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMAN- 84 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~- 84 (441)
+|+|||||++||+||++|+++|++|+|+|+++++||+++|+. .. ..+.+|.+++++...
T Consensus 1 ~v~IiGaG~aGl~aA~~L~~~G~~v~vlE~~~~~GG~~~s~~-~~-------------------~g~~~d~G~~~~~~~~ 60 (453)
T TIGR02731 1 RVAIAGAGLAGLSCAKYLADAGHTPIVLEARDVLGGKVAAWK-DE-------------------DGDWYETGLHIFFGAY 60 (453)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeE-CC-------------------CCCEEEcCcceeccCC
Confidence 589999999999999999999999999999999999998864 11 124567777776544
Q ss_pred chHHHHHHHhCCcceeEEEEecceEEEe--CCeEE--eCCCC--hHHH----hh-hccCChHHHHHHHHHHHHHHhhccc
Q psy2620 85 GSLVKLLIHTGVTRYLEFKSVEGSYVFK--GGKIS--KVPVD--QKEA----LA-SDLMGLFEKRRFRNFLVYIQEFSEA 153 (441)
Q Consensus 85 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~--~g~~~--~~p~~--~~~~----~~-~~~~~~~~k~~l~~~~~~~~~~~~~ 153 (441)
..+.+++.++|+...+.+......+... ++... ..|.. .... +. ...+++.++..+..-+. ......
T Consensus 61 ~~~~~l~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~ 138 (453)
T TIGR02731 61 PNMLQLLKELNIEDRLQWKSHSMIFNQPDKPGTFSRFDFPDIPAPFNGVAAILRNNDMLTWPEKIKFAIGLL--PAIVRG 138 (453)
T ss_pred chHHHHHHHcCCccceeecCCceEEecCCCCcceeeccCCCCCCCHHHHHHHhcCcCCCCHHHHHHHHHHhH--HHHhcC
Confidence 4577888889987665554422222211 22222 12211 0111 11 11233333322221111 000000
Q ss_pred CcccccccCCCCCcHHHHHHHhCCCcchhH-HHHHHh-hcccCccccchhHHHHHHHHHHHHHH-h-hhhCCCCeeeecC
Q psy2620 154 DPKTWKDINPQSATTAQLYDKFGLDPNTKD-FTGHAL-ALYRDDEYINDLAIHTIRRIKLYSDS-L-ARYGKSPYLYPMY 229 (441)
Q Consensus 154 ~~~~~~~~~~~~~s~~~~l~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~s-~-~~~G~~~~~~~~g 229 (441)
...+. ..++.|+.+|+++.+.++.+.+ ++.... +++. .+|.......+..++.. + ..+| ....+..|
T Consensus 139 -~~~~~--~~~~~s~~~~l~~~~~~~~~~~~~~~pl~~~~~~-----~~p~~~S~~~~~~~l~~~~~~~~g-~~~~~~~g 209 (453)
T TIGR02731 139 -QKYVE--EQDKYTVTEWLRKQGVPERVNDEVFIAMSKALNF-----INPDELSMTVVLTALNRFLQERHG-SKMAFLDG 209 (453)
T ss_pred -ccchh--hhccCCHHHHHHHcCCCHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHHHHHHHhcCCC-CeeEeecC
Confidence 01111 1246899999999888887664 443222 2222 13322222222222221 1 1222 22234444
Q ss_pred C-cchHHHHHHHHHHHcCcEEEcccceeEEEE-eCCEEEEEEe-CCe-----EEEcCEEEECCCC------Cccc-----
Q psy2620 230 G-LGELPQSFARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRS-GTE-----IARCKQVYCDPSY------VQDR----- 290 (441)
Q Consensus 230 G-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~~-~g~-----~~~a~~vI~~~~~------~~~~----- 290 (441)
+ ++.++++|.+.++..|++|++|++|++|.. +++++++|++ +|+ ++.||.||++... ++..
T Consensus 210 ~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~~~v~~v~~~~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~ 289 (453)
T TIGR02731 210 APPERLCQPIVDYITSRGGEVRLNSRLKEIVLNEDGSVKHFVLADGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMP 289 (453)
T ss_pred CChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCCCCEEEEEEecCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCH
Confidence 4 578999999999999999999999999976 4566888886 454 7999999986542 2211
Q ss_pred ----cc--cccceEEEEEEecCCC
Q psy2620 291 ----VK--KLNQVIRCICLMDHPI 308 (441)
Q Consensus 291 ----~~--~~~~~~~~~~~~~~~~ 308 (441)
+. ....+.++++.++++.
T Consensus 290 ~~~~~~~~~~~~~~~v~l~~~~~~ 313 (453)
T TIGR02731 290 FFQKLNGLEGVPVINVHIWFDRKL 313 (453)
T ss_pred HHHHhhcCCCCcEEEEEEEEcccc
Confidence 11 1447889999999874
No 20
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.78 E-value=4.3e-17 Score=164.82 Aligned_cols=253 Identities=18% Similarity=0.190 Sum_probs=153.7
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecC-
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMAN- 84 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~- 84 (441)
+|+|||||++||+||+.|+++|++|+|+|+++++||+++++. .. ..+.+|.+++++...
T Consensus 1 ~v~IiG~G~aGl~aA~~L~~~G~~v~v~E~~~~~GG~~~~~~-~~-------------------~g~~~d~G~~~~~~~~ 60 (474)
T TIGR02732 1 KVAIVGAGLAGLSTAVELVDAGHEVDIYESRSFIGGKVGSWV-DG-------------------DGNHIEMGLHVFFGCY 60 (474)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCcEEEEEecCCCCceeeeee-cC-------------------CCceEeeceEEecCch
Confidence 589999999999999999999999999999999999998864 11 124567777777644
Q ss_pred chHHHHHHHhCCcceeEEEEecceEEEeCCeEEe--------CC-CChHHHhhhccCChHHHHHHHHHHH---HHHhhcc
Q psy2620 85 GSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISK--------VP-VDQKEALASDLMGLFEKRRFRNFLV---YIQEFSE 152 (441)
Q Consensus 85 ~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~--------~p-~~~~~~~~~~~~~~~~k~~l~~~~~---~~~~~~~ 152 (441)
.++.+++.+.|+...+.+......+...+++... .| ......+....+++.+|..+..... ....+..
T Consensus 61 ~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~l~~~~ls~~dklr~~~~~~~~~~~~~~~~ 140 (474)
T TIGR02732 61 ANLFRLMKKVGAEDNLLLKEHTHTFVNKGGDIGELDFRFATGAPFNGLKAFFTTSQLKWVDKLRNALALGTSPIVRGLVD 140 (474)
T ss_pred HHHHHHHHHcCCccccccccceeEEEcCCCcccccccCCCCCCchhhhHHHhcCCCCCHHHHHHHHHHhhhhHHHhhccc
Confidence 4677888888887554433211112222333221 22 1122344445566666554333221 1111100
Q ss_pred c--CcccccccCCCCCcHHHHHHHhCCCcchh-HHHHHHh-hcccCccccchhHHHHHHHHHHH--HHHhhhhCCCCeee
Q psy2620 153 A--DPKTWKDINPQSATTAQLYDKFGLDPNTK-DFTGHAL-ALYRDDEYINDLAIHTIRRIKLY--SDSLARYGKSPYLY 226 (441)
Q Consensus 153 ~--~~~~~~~~~~~~~s~~~~l~~~~l~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~--~~s~~~~G~~~~~~ 226 (441)
. ....+... ++.|+.+|+++++.++.+. .++...+ ..... ++.......+... ...... ..+...+
T Consensus 141 ~~~~~~~~~~~--~~~t~~~~l~~~~~~~~~~~~~~~Pll~~~~~~-----~~~~~Sa~~~~~~~~~~~~~~-~~s~~~~ 212 (474)
T TIGR02732 141 YDGAMKTIRDL--DKISFAEWFLSHGGSLGSIKRMWDPIAYALGFI-----DCENISARCMLTIFMLFAAKT-EASKLRM 212 (474)
T ss_pred cchhhhhhhhh--ccccHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-----CHHHHHHHHHHHHHHHHHhCC-Ccceeee
Confidence 0 00111122 3589999999998886544 4443322 22221 2222121111111 111122 2235678
Q ss_pred ecCCcch-HHHHHHHHHHHcCcEEEcccceeEEEEeC---C--EEEEEEe-CC---eEEEcCEEEECCCC
Q psy2620 227 PMYGLGE-LPQSFARLSAIYGGTYMLDKPVDEIVIEN---G--KVVGVRS-GT---EIARCKQVYCDPSY 286 (441)
Q Consensus 227 ~~gG~~~-l~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~v~~-~g---~~~~a~~vI~~~~~ 286 (441)
++||.++ +.+.|.+.+++.|++|+++++|++|..++ + ++++|++ +| +++.||+||++.+.
T Consensus 213 ~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~ 282 (474)
T TIGR02732 213 LKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSDGSTRVTGLIMSKPEGKKVIKADAYVAACDV 282 (474)
T ss_pred ecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCCCceeEEEEEEecCCcceEEECCEEEECCCh
Confidence 8888776 67889999999999999999999998754 2 3777776 33 56999999997654
No 21
>PLN02487 zeta-carotene desaturase
Probab=99.77 E-value=5.1e-17 Score=165.71 Aligned_cols=255 Identities=17% Similarity=0.220 Sum_probs=155.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMAN 84 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~ 84 (441)
.+|+|||+|++||++|+.|+++|++|+|+|+++.+||.++++. .. ..+.++.+++++...
T Consensus 76 ~~v~iiG~G~~Gl~~a~~L~~~g~~v~i~E~~~~~gG~~~s~~-~~-------------------~g~~~e~G~h~~~~~ 135 (569)
T PLN02487 76 LKVAIIGAGLAGMSTAVELLDQGHEVDIYESRPFIGGKVGSFV-DK-------------------NGNHIEMGLHVFFGC 135 (569)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCeeEEEecCCCCCCceeeee-ec-------------------CCcEEecceeEecCC
Confidence 5899999999999999999999999999999999999998875 11 134567778776543
Q ss_pred -chHHHHHHHhCCcceeEEEEecceEEEeCCeEE----eCCCChH-----HHhhhccCChHHHHHHHHHH---HHHHhhc
Q psy2620 85 -GSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKIS----KVPVDQK-----EALASDLMGLFEKRRFRNFL---VYIQEFS 151 (441)
Q Consensus 85 -~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~----~~p~~~~-----~~~~~~~~~~~~k~~l~~~~---~~~~~~~ 151 (441)
.++.+++.++|+...+.+...-..+...+|... ..|.... ..+....+++.+|..+..-. ..+..+.
T Consensus 136 ~~~~~~ll~~LGl~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~pl~~~~~~l~~~~Ls~~dklr~~~~l~~~~~~~al~ 215 (569)
T PLN02487 136 YNNLFRLMKKVGADENLLVKDHTHTFVNKGGDVGELDFRFPVGAPLHGIKAFLTTNQLEPYDKARNALALATSPVVRALV 215 (569)
T ss_pred cHHHHHHHHhcCCcccccccccceeEEecCCEEeeeccCCCCCchhhhHHHHHcCCCCCHHHHHhhcccccccchhhhcc
Confidence 467888999998765543321111333345442 1222111 22233344444443321111 0001000
Q ss_pred c-c-CcccccccCCCCCcHHHHHHHhCCCcchhH-HHHHHh-hcccCccccchhHHHHHHHHHHHHHHhh-hhCCCCeee
Q psy2620 152 E-A-DPKTWKDINPQSATTAQLYDKFGLDPNTKD-FTGHAL-ALYRDDEYINDLAIHTIRRIKLYSDSLA-RYGKSPYLY 226 (441)
Q Consensus 152 ~-~-~~~~~~~~~~~~~s~~~~l~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~s~~-~~G~~~~~~ 226 (441)
. . ....+... ++.|+.+|+++++.++++.+ ++...+ +... .++.......+...+.... .-..+...+
T Consensus 216 ~~~~~~~~~~~~--d~~sv~~~l~r~~g~~~~~~~l~dPll~~~~~-----~~~d~~SA~~~~~vl~~~~~~~~~~~l~~ 288 (569)
T PLN02487 216 DPDGAMRDIRDL--DDISFSDWFTSHGGTRMSIKRMWDPIAYALGF-----IDCDNISARCMLTIFSLFATKTEASLLRM 288 (569)
T ss_pred Cccccccccccc--cCCcHHHHHHHhCCCHHHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 0 0 01112222 35899999999988764444 443222 2111 1222222222222221111 111234789
Q ss_pred ecCCcch-HHHHHHHHHHHcCcEEEcccceeEEEEeC---C--EEEEEEe--C--CeEEEcCEEEECCCC
Q psy2620 227 PMYGLGE-LPQSFARLSAIYGGTYMLDKPVDEIVIEN---G--KVVGVRS--G--TEIARCKQVYCDPSY 286 (441)
Q Consensus 227 ~~gG~~~-l~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~v~~--~--g~~~~a~~vI~~~~~ 286 (441)
++||+++ |.+.+++.++..||+|+++++|++|..++ + ++++|++ + ++++.||.||++.+.
T Consensus 289 ~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~ 358 (569)
T PLN02487 289 LKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPDGETYVTGLKVSKATEKEIVKADAYVAACDV 358 (569)
T ss_pred cCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCCCceeEEEEEEecCCCceEEECCEEEECCCH
Confidence 9999995 99999999999999999999999999863 2 4788887 3 357999999997654
No 22
>PLN02268 probable polyamine oxidase
Probab=99.68 E-value=8.6e-16 Score=154.62 Aligned_cols=254 Identities=14% Similarity=0.122 Sum_probs=139.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMAN 84 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~ 84 (441)
.+|||||||++||+||+.|.++|++|+|||+++++||++.|.. .. .+.+|++++++...
T Consensus 1 ~~VvVIGaGisGL~aA~~L~~~g~~v~vlEa~~r~GGri~t~~-~~--------------------g~~~d~G~~~i~~~ 59 (435)
T PLN02268 1 PSVIVIGGGIAGIAAARALHDASFKVTLLESRDRIGGRVHTDY-SF--------------------GFPVDMGASWLHGV 59 (435)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCeEEEEeCCCCCCceeeecC-cC--------------------CcccCCCCeeEecc
Confidence 3799999999999999999999999999999999999998866 22 24568888888632
Q ss_pred ---chHHHHHHHhCCcceeEEEEecceEEEeCC---------eEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcc
Q psy2620 85 ---GSLVKLLIHTGVTRYLEFKSVEGSYVFKGG---------KISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSE 152 (441)
Q Consensus 85 ---~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g---------~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~ 152 (441)
.++.+++.+.|+..+-. ..+..+.+.++ ....+|.+....+ ...+.++...+.....
T Consensus 60 ~~~~~~~~l~~~lgl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~ 128 (435)
T PLN02268 60 CNENPLAPLIGRLGLPLYRT--SGDNSVLYDHDLESYALFDMDGNQVPQELVTKV---------GETFERILEETEKVRD 128 (435)
T ss_pred CCCchHHHHHHHhCCceEec--cCCccccccccccccceecCCCCCCCHHHHHHH---------HHHHHHHHHHHHHHHh
Confidence 35778888888732110 11111222211 1111111100000 1122223332222110
Q ss_pred cCcccccccCCCCCcHHHHHHHhCCCc-------chhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCee
Q psy2620 153 ADPKTWKDINPQSATTAQLYDKFGLDP-------NTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYL 225 (441)
Q Consensus 153 ~~~~~~~~~~~~~~s~~~~l~~~~l~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~ 225 (441)
....+.|+.++++.+.... ..++++...+.... ..+-.++....+.. +.......| ...
T Consensus 129 --------~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ls~~~---~~~~~~~~g--~~~ 194 (435)
T PLN02268 129 --------EHEEDMSLLQAISIVLERHPELRLEGLAHEVLQWYLCRME-GWFAADADTISLKS---WDQEELLEG--GHG 194 (435)
T ss_pred --------ccCCCcCHHHHHHHHhhhCcccccchHHHHHHHHHHHHHH-HHhCCChHhCchhh---cCCccccCC--Cce
Confidence 0113578888876543111 11222221111100 00001111111110 000000012 124
Q ss_pred eecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCC-------------Cccc-
Q psy2620 226 YPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSY-------------VQDR- 290 (441)
Q Consensus 226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~-------------~~~~- 290 (441)
+..+|++.++++|++ |..|+++++|++|...++.+ .|.+ +|+++.||+||++... +|..
T Consensus 195 ~~~~G~~~l~~~l~~-----~~~i~~~~~V~~i~~~~~~v-~v~~~~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~ 268 (435)
T PLN02268 195 LMVRGYDPVINTLAK-----GLDIRLNHRVTKIVRRYNGV-KVTVEDGTTFVADAAIIAVPLGVLKANIIKFEPELPEWK 268 (435)
T ss_pred eecCCHHHHHHHHhc-----cCceeCCCeeEEEEEcCCcE-EEEECCCcEEEcCEEEEecCHHHHhcCcceecCCCCHHH
Confidence 567899999999864 55799999999998866654 3554 6778999999985421 1111
Q ss_pred ---c--ccccceEEEEEEecCCCCCC
Q psy2620 291 ---V--KKLNQVIRCICLMDHPIPNT 311 (441)
Q Consensus 291 ---~--~~~~~~~~~~~~~~~~~~~~ 311 (441)
+ ...+...|+.+.++++ .|.
T Consensus 269 ~~ai~~~~~g~~~Kv~l~f~~~-fw~ 293 (435)
T PLN02268 269 EEAISDLGVGIENKIALHFDSV-FWP 293 (435)
T ss_pred HHHHHhCCccceeEEEEEeCCC-CCC
Confidence 1 1246788898888876 343
No 23
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=99.66 E-value=1.3e-14 Score=145.54 Aligned_cols=239 Identities=13% Similarity=0.199 Sum_probs=139.6
Q ss_pred cccEEEECCChhHHHHHhhhccC----CCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVS----GKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPK 79 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~ 79 (441)
..+|+|||||++||+||++|++. |.+|+|||+++.+||++.++. .. ...|.++.+|.
T Consensus 22 ~~~a~IIGaGiAGLAAA~~L~~dg~~~G~~VtIlEk~~~~GG~~~~~~-~~------------------~~Gy~~~~G~~ 82 (576)
T PRK13977 22 NKKAYIIGSGLASLAAAVFLIRDGQMPGENITILEELDVPGGSLDGAG-NP------------------EKGYVARGGRE 82 (576)
T ss_pred CCeEEEECCCHHHHHHHHHHHHccCCCCCcEEEEeCCCCCCCCccCcc-cc------------------cCCEEEECCCC
Confidence 46899999999999999999985 689999999999999998754 21 01355566665
Q ss_pred eeecCchHHHHHHHh------C---CcceeEEEEecceE-----EEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHH
Q psy2620 80 FLMANGSLVKLLIHT------G---VTRYLEFKSVEGSY-----VFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLV 145 (441)
Q Consensus 80 ~l~~~~~~~~~l~~~------~---~~~~l~~~~~~~~~-----~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~ 145 (441)
+......+.+++.+. + ..++..+...++.+ ++.+|..+.. ..+.+-. +..+.++.
T Consensus 83 ~~~~y~~l~~ll~~ipsle~~g~sv~dd~~~~~~~~p~~s~~Rl~~~~g~~~d~----------~~~~L~~-k~r~~Ll~ 151 (576)
T PRK13977 83 MENHFECLWDLFRSIPSLEDPGASVLDEFYWFNKDDPNYSKARLIHKRGEILDT----------DKFGLSK-KDRKELLK 151 (576)
T ss_pred ccchHHHHHHHHHhccccCCCCcccccceeeeecCCcccceeeEEcCCCCEEEC----------cCCCCCH-HHHHHHHH
Confidence 433334566666543 1 11444554444442 1222322211 1122222 22222233
Q ss_pred HHHhhcccCcccccccCCCCCcHHHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCC-CCe
Q psy2620 146 YIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGK-SPY 224 (441)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~s~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~-~~~ 224 (441)
....- .+.+ +..++.||++.......+..+.....+. ..+ .++.+....+..|+..+...+. +++
T Consensus 152 l~l~~-------e~~L--d~~tI~d~f~~~Ff~t~Fw~~w~t~FaF---~~w--hSA~E~rry~~rf~~~~~~l~~~s~l 217 (576)
T PRK13977 152 LLLTP-------EEKL--DDKTIEDWFSPEFFETNFWYYWRTMFAF---EKW--HSALEMRRYMHRFIHHIGGLPDLSGL 217 (576)
T ss_pred HhccC-------HHHh--CCcCHHHHHhhcCchhHHHHHHHHHHCC---chh--hHHHHHHHHHHHHHHhhccCCccccc
Confidence 22211 0112 4589999998766543333333222211 111 1223333344445444443332 234
Q ss_pred eeecCC-cchHHHHHHHHHHHcCcEEEcccceeEEEEe--C--CEEEEEEe--CC-----eEEEcCEEEECCCC
Q psy2620 225 LYPMYG-LGELPQSFARLSAIYGGTYMLDKPVDEIVIE--N--GKVVGVRS--GT-----EIARCKQVYCDPSY 286 (441)
Q Consensus 225 ~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~--~~~~~v~~--~g-----~~~~a~~vI~~~~~ 286 (441)
.+.+|- ..++++.|.+.++.+|++|+++++|++|..+ + ++|++|.. +| ....+|.||++.|-
T Consensus 218 ~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d~~~~~VtgI~~~~~~~~~~I~l~~~DlVivTnGs 291 (576)
T PRK13977 218 KFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDITGGKKTATAIHLTRNGKEETIDLTEDDLVFVTNGS 291 (576)
T ss_pred cCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCCceEEEEEEEEeCCceeEEEecCCCEEEEeCCc
Confidence 444444 5789999999999999999999999999884 4 67888875 33 23566788875543
No 24
>PLN02529 lysine-specific histone demethylase 1
Probab=99.64 E-value=2.2e-14 Score=149.50 Aligned_cols=260 Identities=15% Similarity=0.156 Sum_probs=146.9
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA 83 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~ 83 (441)
..||+|||||++||+||..|+++|++|+|||+++++||++.|.. .. +.+..+.+|++++|+..
T Consensus 160 ~~~v~viGaG~aGl~aA~~l~~~g~~v~v~E~~~~~GG~~~t~~-~~----------------~~g~~~~~DlGaswi~g 222 (738)
T PLN02529 160 EGSVIIVGAGLAGLAAARQLLSFGFKVVVLEGRNRPGGRVYTQK-MG----------------RKGQFAAVDLGGSVITG 222 (738)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCcEEEEecCccCcCceeeec-cc----------------CCCCceEEecCCeeccc
Confidence 57999999999999999999999999999999999999998876 22 01112457888888864
Q ss_pred C--chHHHHHHHhCCcceeEEEEecce--EEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCccccc
Q psy2620 84 N--GSLVKLLIHTGVTRYLEFKSVEGS--YVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWK 159 (441)
Q Consensus 84 ~--~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~ 159 (441)
. .++..+..+.++.- ...... ++..+|.......+ +.+ + ..+.++++.+..+......
T Consensus 223 ~~~npl~~la~~lgl~~----~~~~~~~~~~~~~G~~v~~~~~--~~~--------~-~~~~~~l~~~~~l~~~~~~--- 284 (738)
T PLN02529 223 IHANPLGVLARQLSIPL----HKVRDNCPLYKPDGALVDKEID--SNI--------E-FIFNKLLDKVTELRQIMGG--- 284 (738)
T ss_pred cccchHHHHHHHhCCCc----cccCCCceEEeCCCcCcchhhh--hhH--------H-HHHHHHHHHHHHHHHhccc---
Confidence 4 34556666666532 122222 23345543311111 111 0 0111222222111110000
Q ss_pred ccCCCCCcHHHHHHHhC------CCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCCcch
Q psy2620 160 DINPQSATTAQLYDKFG------LDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGE 233 (441)
Q Consensus 160 ~~~~~~~s~~~~l~~~~------l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG~~~ 233 (441)
...+.|+.++++++. +++..++++......... .+..+. ..+. +..+......-..+.+....||++.
T Consensus 285 --~~~d~Sl~~~le~~~~~~~~~~t~~e~~ll~~~~~~le~-a~~~~~--s~LS-l~~~~~~~~~e~~G~~~~i~GG~~~ 358 (738)
T PLN02529 285 --FANDISLGSVLERLRQLYGVARSTEERQLLDWHLANLEY-ANAGCL--SDLS-AAYWDQDDPYEMGGDHCFLAGGNWR 358 (738)
T ss_pred --CccCCCHHHHHHHHHhhhccCCCHHHHHHHHHHHHHhce-ecCCCh--HHhh-hhHhhhccccccCCceEEECCcHHH
Confidence 113578999887653 333333444322211100 000111 0111 1111111011112346778999999
Q ss_pred HHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCC-------------Cccc----c--ccc
Q psy2620 234 LPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSY-------------VQDR----V--KKL 294 (441)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~-------------~~~~----~--~~~ 294 (441)
|+++|++. ..|++|++|++|..+++.+ .|.++++++.||+||++... +|.. + -..
T Consensus 359 Li~aLA~~-----L~IrLnt~V~~I~~~~dGV-tV~t~~~~~~AD~VIVTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~y 432 (738)
T PLN02529 359 LINALCEG-----VPIFYGKTVDTIKYGNDGV-EVIAGSQVFQADMVLCTVPLGVLKKRTIRFEPELPRRKLAAIDRLGF 432 (738)
T ss_pred HHHHHHhc-----CCEEcCCceeEEEEcCCeE-EEEECCEEEEcCEEEECCCHHHHHhccccCCCCCCHHHHHHHHcCCC
Confidence 99999763 3599999999999876653 45566788999999985431 2211 1 125
Q ss_pred cceEEEEEEecCCCCCC
Q psy2620 295 NQVIRCICLMDHPIPNT 311 (441)
Q Consensus 295 ~~~~~~~~~~~~~~~~~ 311 (441)
+.+.|+++.++++ .|.
T Consensus 433 G~v~KV~L~F~~~-FW~ 448 (738)
T PLN02529 433 GLLNKVAMVFPSV-FWG 448 (738)
T ss_pred ceeEEEEEEeCCc-ccc
Confidence 7789999999875 443
No 25
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.63 E-value=1.6e-14 Score=144.65 Aligned_cols=259 Identities=16% Similarity=0.154 Sum_probs=153.2
Q ss_pred HHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecC-chHHHHHHHhCC
Q psy2620 18 ILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMAN-GSLVKLLIHTGV 96 (441)
Q Consensus 18 ~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~-~~~~~~l~~~~~ 96 (441)
+||++|+++|++|+|||+++++||++.|++ .. ++ .+.+|.+++++... ..+.+++.++|+
T Consensus 1 ~AA~~L~~~G~~v~vlEa~~~~GG~~~t~~-~~----g~--------------~~~~d~G~~~~~~~~~~~~~l~~~lgl 61 (419)
T TIGR03467 1 SAAVELARAGARVTLFEARPRLGGRARSFE-DG----GL--------------GQTIDNGQHVLLGAYTNLLALLRRIGA 61 (419)
T ss_pred ChHHHHHhCCCceEEEecCCCCCCceeEee-cC----CC--------------CcceecCCEEEEcccHHHHHHHHHhCC
Confidence 489999999999999999999999999987 43 22 13467777777654 457788888888
Q ss_pred cceeEEEEecceEEEeCCeEEe-----CCC--ChHHH-hhhccCChHHHHHHHHHHHHHHhhcccCcccccccCCCCCcH
Q psy2620 97 TRYLEFKSVEGSYVFKGGKISK-----VPV--DQKEA-LASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATT 168 (441)
Q Consensus 97 ~~~l~~~~~~~~~~~~~g~~~~-----~p~--~~~~~-~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 168 (441)
.....+......+..+++.... ++. ..... .....++..++..+.+++..+.... . . ..+..|+
T Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~---~--~~~~~s~ 133 (419)
T TIGR03467 62 EPRLQGPRLPLPFYDPGGRLSRLRLSRLPAPLHLARGLLRAPGLSWADKLALARALLALRRTR---F---R--ALDDTTV 133 (419)
T ss_pred chhhhcccCCcceecCCCCceeecCCCCCCCHHHHHHHhcCCCCCHHHHHHHHHHHHHHHhcC---c---c--ccCCCCH
Confidence 6554321111111222333211 111 10011 1222344445555544443332211 0 1 1245899
Q ss_pred HHHHHHhCCCcchhHHH-HHHh-hcccCccccchhHHHHHHHHHHHHH-Hhhhh-CCCCeeeecCCcchHH-HHHHHHHH
Q psy2620 169 AQLYDKFGLDPNTKDFT-GHAL-ALYRDDEYINDLAIHTIRRIKLYSD-SLARY-GKSPYLYPMYGLGELP-QSFARLSA 243 (441)
Q Consensus 169 ~~~l~~~~l~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~-s~~~~-G~~~~~~~~gG~~~l~-~~l~~~~~ 243 (441)
.+|+++++.++.+.+.+ ...+ ..+. .+|.......+..++. ..... ....+.+|+||++++. ++|++.++
T Consensus 134 ~~~l~~~~~~~~~~~~~~~p~~~~~~~-----~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~ 208 (419)
T TIGR03467 134 GDWLQAAGQSERLIERLWEPLLLSALN-----TPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLD 208 (419)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHH
Confidence 99999988777666633 2222 2221 1232222222222221 11111 1225889999988776 55888888
Q ss_pred HcCcEEEcccceeEEEEeCCEEEEEE-eCCeEEEcCEEEECCCC------Ccc-c----cc--cccceEEEEEEecCCC
Q psy2620 244 IYGGTYMLDKPVDEIVIENGKVVGVR-SGTEIARCKQVYCDPSY------VQD-R----VK--KLNQVIRCICLMDHPI 308 (441)
Q Consensus 244 ~~G~~i~~~~~V~~i~~~~~~~~~v~-~~g~~~~a~~vI~~~~~------~~~-~----~~--~~~~~~~~~~~~~~~~ 308 (441)
+.|++|++|++|++|..+++++..+. .+|+++.||+||++... ++. . +. ....+.++.+.++++.
T Consensus 209 ~~g~~i~~~~~V~~i~~~~~~~~~~~~~~g~~~~~d~vi~a~p~~~~~~ll~~~~~~~~l~~~~~~~~~~v~l~~~~~~ 287 (419)
T TIGR03467 209 SRGGEVRLGTRVRSIEANAGGIRALVLSGGETLPADAVVLAVPPRHAASLLPGEDLGALLTALGYSPITTVHLRLDRAV 287 (419)
T ss_pred HcCCEEEcCCeeeEEEEcCCcceEEEecCCccccCCEEEEcCCHHHHHHhCCCchHHHHHhhcCCcceEEEEEEeCCCc
Confidence 89999999999999998777654333 46788999999986542 222 1 11 2356778888888874
No 26
>PLN02568 polyamine oxidase
Probab=99.63 E-value=3.6e-14 Score=144.90 Aligned_cols=77 Identities=10% Similarity=0.236 Sum_probs=63.4
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCC-----CeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeee
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSG-----KKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVD 75 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G-----~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~id 75 (441)
|++..||||||||++||+||.+|+++| ++|+|||+++++||+++|.. .. .+.++
T Consensus 2 ~~~~~~v~iiGaG~aGl~aa~~L~~~g~~~~~~~v~v~E~~~~~GGr~~t~~-~~--------------------g~~~d 60 (539)
T PLN02568 2 VAKKPRIVIIGAGMAGLTAANKLYTSSAANDMFELTVVEGGDRIGGRINTSE-FG--------------------GERIE 60 (539)
T ss_pred CCCCCcEEEECCCHHHHHHHHHHHhcccccCCceEEEEeCCCCcCCeEEEEE-eC--------------------CeEEe
Confidence 456689999999999999999999888 99999999999999999877 33 24567
Q ss_pred cccceeec--CchHHHHHHHhCCcc
Q psy2620 76 LIPKFLMA--NGSLVKLLIHTGVTR 98 (441)
Q Consensus 76 l~p~~l~~--~~~~~~~l~~~~~~~ 98 (441)
++++++.. ..++.+++.+.++..
T Consensus 61 ~G~~~~~g~~~~~~~~l~~~~g~~~ 85 (539)
T PLN02568 61 MGATWIHGIGGSPVYKIAQEAGSLE 85 (539)
T ss_pred cCCceeCCCCCCHHHHHHHHhCCcc
Confidence 77777763 356778888888754
No 27
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=99.63 E-value=7.8e-14 Score=146.06 Aligned_cols=261 Identities=17% Similarity=0.214 Sum_probs=145.4
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA 83 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~ 83 (441)
..+|+|||||++||+||++|++.|++|+|+|+++++||++.+.. .. ++ ...+.+|++++++..
T Consensus 238 ~~~v~IiGaG~aGl~aA~~L~~~g~~v~v~E~~~r~GGr~~t~~-~~----g~------------~~~~~~d~Gas~i~g 300 (808)
T PLN02328 238 PANVVVVGAGLAGLVAARQLLSMGFKVVVLEGRARPGGRVKTMK-MK----GD------------GVVAAADLGGSVLTG 300 (808)
T ss_pred CCCEEEECcCHHHHHHHHHHHHCCCcEEEEeccccCCCcccccc-cC----CC------------CcceeccCCceeecC
Confidence 47999999999999999999999999999999999999998877 43 21 122356777777754
Q ss_pred C--chHHHHHHHhCCcceeEEEEecce--EEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCccccc
Q psy2620 84 N--GSLVKLLIHTGVTRYLEFKSVEGS--YVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWK 159 (441)
Q Consensus 84 ~--~~~~~~l~~~~~~~~l~~~~~~~~--~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~ 159 (441)
. .++..++.+.++. ...+... +++.+|+.+..... +.. + ..+.++++.+..+.......
T Consensus 301 ~~~npl~~l~~~lgl~----~~~~~~~~~~~~~dG~~~~~~~~--~~v--------~-~~f~~lL~~~~klr~~~~~~-- 363 (808)
T PLN02328 301 INGNPLGVLARQLGLP----LHKVRDICPLYLPDGKAVDAEID--SKI--------E-ASFNKLLDRVCKLRQAMIEE-- 363 (808)
T ss_pred CCccHHHHHHHHcCCc----eEecCCCceEEeCCCcCcchhhh--hhH--------H-HHHHHHHHHHHHHHHhhhhc--
Confidence 3 3466677777753 2222222 34456644311111 000 0 11122222222111100000
Q ss_pred ccCCCCCcHHHHHHHh------CCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhh-CCCCeeeecCCcc
Q psy2620 160 DINPQSATTAQLYDKF------GLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARY-GKSPYLYPMYGLG 232 (441)
Q Consensus 160 ~~~~~~~s~~~~l~~~------~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~-G~~~~~~~~gG~~ 232 (441)
....+.++.++++++ ..++..+.++...+... .+........+. +..+.. -..+ ..+.+....||++
T Consensus 364 -~~~~D~SLg~~le~~~~~~~~~~~~~e~~Ll~w~lanl---E~~~gs~ls~LS-l~~w~q-d~~~e~~G~~~~v~GG~~ 437 (808)
T PLN02328 364 -VKSVDVNLGTALEAFRHVYKVAEDPQERMLLNWHLANL---EYANASLMSNLS-MAYWDQ-DDPYEMGGDHCFIPGGND 437 (808)
T ss_pred -ccccCcCHHHHHHHHhhhhccCCCHHHHHHHHHHHHHH---hccchhhHHHHH-hhhhhc-cccccCCCeEEEECCcHH
Confidence 011236888888643 12222222222111100 000111011111 000000 0011 1124667789999
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCC-------------Cccc----c--cc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSY-------------VQDR----V--KK 293 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~-------------~~~~----~--~~ 293 (441)
.|+++|++.+ .|+++++|++|...++.+ .|..+|+++.||+||++... +|.. + ..
T Consensus 438 ~Li~aLa~~L-----~I~ln~~V~~I~~~~dgV-~V~~~G~~~~AD~VIvTvPl~vLk~~~I~F~P~LP~~K~~AI~~l~ 511 (808)
T PLN02328 438 TFVRELAKDL-----PIFYERTVESIRYGVDGV-IVYAGGQEFHGDMVLCTVPLGVLKKGSIEFYPELPQRKKDAIQRLG 511 (808)
T ss_pred HHHHHHHhhC-----CcccCCeeEEEEEcCCeE-EEEeCCeEEEcCEEEECCCHHHHhhcccccCCCCCHHHHHHHHcCC
Confidence 9999998754 289999999999866554 34557889999999986432 1211 1 12
Q ss_pred ccceEEEEEEecCCCCCC
Q psy2620 294 LNQVIRCICLMDHPIPNT 311 (441)
Q Consensus 294 ~~~~~~~~~~~~~~~~~~ 311 (441)
.+.+.|+++.++++ .|.
T Consensus 512 yG~~~KV~L~F~~~-FW~ 528 (808)
T PLN02328 512 YGLLNKVALLFPYN-FWG 528 (808)
T ss_pred CcceEEEEEEeCCc-ccc
Confidence 57889999999876 454
No 28
>PLN02676 polyamine oxidase
Probab=99.60 E-value=6.9e-14 Score=141.69 Aligned_cols=266 Identities=14% Similarity=0.148 Sum_probs=138.7
Q ss_pred CcccEEEECCChhHHHHHhhhccCCC-eEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeeccccee
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFL 81 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l 81 (441)
..+||||||||++||+||++|+++|. +|+|||+++++||++.+.+ .. | +.+|++++++
T Consensus 25 ~~~~v~IIGaG~sGL~aa~~L~~~g~~~v~vlE~~~~~GG~~~~~~-~~----g----------------~~~d~g~~~~ 83 (487)
T PLN02676 25 PSPSVIIVGAGMSGISAAKTLSEAGIEDILILEATDRIGGRMRKAN-FA----G----------------VSVELGANWV 83 (487)
T ss_pred CCCCEEEECCCHHHHHHHHHHHHcCCCcEEEecCCCCCCCcceeec-CC----C----------------eEEecCCEEE
Confidence 45899999999999999999999998 6999999999999998766 22 2 3466777777
Q ss_pred ec-----CchHHHHHHHhCCcceeEEEEec--ceEEE-eCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhccc
Q psy2620 82 MA-----NGSLVKLLIHTGVTRYLEFKSVE--GSYVF-KGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEA 153 (441)
Q Consensus 82 ~~-----~~~~~~~l~~~~~~~~l~~~~~~--~~~~~-~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~ 153 (441)
.. ..++.+++.+.++..... ..+ ...++ .+|+.+ +....+.+. +.+..+.+++..+...
T Consensus 84 ~~~~~~~~~~~~~l~~~~g~~~~~~--~~~~~~~~~~~~~g~~~--~~~~~~~~~---------~~~~~~~~~~~~~~~~ 150 (487)
T PLN02676 84 EGVGGPESNPIWELANKLKLRTFYS--DFDNLSSNIYKQDGGLY--PKKVVQKSM---------KVADASDEFGENLSIS 150 (487)
T ss_pred EcccCcccChHHHHHHhcCCceeec--CccccceeEECCCCCCC--CHHHHHHHH---------HHHHHHHHHHHHHHHh
Confidence 42 245667787777643211 111 11122 234322 110000110 1111222222222111
Q ss_pred CcccccccCCCCCcH--HHHHHHhCCCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeee-cCC
Q psy2620 154 DPKTWKDINPQSATT--AQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYP-MYG 230 (441)
Q Consensus 154 ~~~~~~~~~~~~~s~--~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~-~gG 230 (441)
.. ....++.++ .+.+.... ...........+.... .+-.++....+..+.. ......+|...+... .||
T Consensus 151 ~~----~~~~~~~s~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~S~~~~~~-~~~~~~~g~~~~~~~~~~G 222 (487)
T PLN02676 151 LS----AKKAVDISILTAQRLFGQV-PKTPLEMVIDYYNYDY--EFAEPPRVTSLKNTEP-NPTFVDFGEDEYFVADPRG 222 (487)
T ss_pred hc----ccCCCCccHHHHHHHHhhC-CCCHHHHHHHHHhccc--eeccCccccchhhcCc-ccccccCCCceEEeecCCC
Confidence 00 011123444 22233221 1001111111111000 0001111111111100 000111232233332 589
Q ss_pred cchHHHHHHHHHHHc------CcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCC-------------Cccc
Q psy2620 231 LGELPQSFARLSAIY------GGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSY-------------VQDR 290 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~------G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~-------------~~~~ 290 (441)
++.|+++|++.+... +.+|++|++|++|..+++.+ .|.+ +|++++||+||++... +|..
T Consensus 223 ~~~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~gV-~V~~~~G~~~~a~~VIvtvPl~vLk~~~I~F~P~LP~~ 301 (487)
T PLN02676 223 YESLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKNGV-TVKTEDGSVYRAKYVIVSVSLGVLQSDLIKFKPPLPDW 301 (487)
T ss_pred HHHHHHHHHhhcccccccccCCCceecCCEeeEEEEcCCcE-EEEECCCCEEEeCEEEEccChHHhccCceEEeCCCCHH
Confidence 999999998865332 36799999999998876654 4554 6788999999986431 2211
Q ss_pred c------ccccceEEEEEEecCCCCCCC
Q psy2620 291 V------KKLNQVIRCICLMDHPIPNTK 312 (441)
Q Consensus 291 ~------~~~~~~~~~~~~~~~~~~~~~ 312 (441)
. ...+...|+++.++++ .|+.
T Consensus 302 k~~ai~~l~~g~~~Kv~l~f~~~-FW~~ 328 (487)
T PLN02676 302 KIEAIYQFDMAVYTKIFLKFPYK-FWPS 328 (487)
T ss_pred HHHHHHhCCceeeEEEEEEeCCC-CCCC
Confidence 1 1247789999999876 5543
No 29
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=99.59 E-value=9.3e-14 Score=127.66 Aligned_cols=249 Identities=18% Similarity=0.163 Sum_probs=135.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceee--
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLM-- 82 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~-- 82 (441)
-+|.|||+|++||+||++|++. ++|+++|+++++||+++|.. .+.. ++ .+.+|.+-.++-
T Consensus 9 ~~IAVIGsGisGLSAA~~Ls~r-hdVTLfEA~~rlGGha~Tv~-~~~d--~~--------------g~~vDtGfiVyn~~ 70 (447)
T COG2907 9 RKIAVIGSGISGLSAAWLLSRR-HDVTLFEADRRLGGHANTVA-GNTD--GG--------------GVFVDTGFIVYNER 70 (447)
T ss_pred cceEEEcccchhhhhHHhhhcc-cceEEEeccccccCccceee-cccc--CC--------------ceeecceeEEecCC
Confidence 5899999999999999999998 89999999999999999875 2210 11 123343322221
Q ss_pred cCchHHHHHHHhCCcceeEEEEecceEEEeCCeE-EeCCCChHHHhh--hccCChHHHHHHHHHHHHHHhhcc--cCccc
Q psy2620 83 ANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKI-SKVPVDQKEALA--SDLMGLFEKRRFRNFLVYIQEFSE--ADPKT 157 (441)
Q Consensus 83 ~~~~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~-~~~p~~~~~~~~--~~~~~~~~k~~l~~~~~~~~~~~~--~~~~~ 157 (441)
....+..++.+.|+...-.+.... ..+.+|.+ +.-.......+. ..++.. ++-+++..+..+.. ..+..
T Consensus 71 tYpnl~~Lf~~iGv~t~as~Msf~--v~~d~gglEy~g~tgl~~L~aqk~n~l~p----Rf~~mlaeiLrf~r~~~~~~d 144 (447)
T COG2907 71 TYPNLTRLFKTIGVDTKASFMSFS--VSLDMGGLEYSGLTGLAGLLAQKRNLLRP----RFPCMLAEILRFYRSDLAPSD 144 (447)
T ss_pred CcchHHHHHHHcCCCCcccceeEE--EEecCCceeeccCCCccchhhccccccch----hHHHHHHHHHHHhhhhccchh
Confidence 114677888887775321111110 01112211 111000001111 111111 11122222222221 11111
Q ss_pred ccccCCCCCcHHHHHHHhCCCcchhH-HHHHHh-hcccCccccchhHHHHHHHHHHHHHHhhh---hCCCCeeeecCCcc
Q psy2620 158 WKDINPQSATTAQLYDKFGLDPNTKD-FTGHAL-ALYRDDEYINDLAIHTIRRIKLYSDSLAR---YGKSPYLYPMYGLG 232 (441)
Q Consensus 158 ~~~~~~~~~s~~~~l~~~~l~~~~~~-~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~s~~~---~G~~~~~~~~gG~~ 232 (441)
.......++.+||++.+.+..+++ ++..+. +.+.. . +.+-.......+..|....|. .+...|..+.||+.
T Consensus 145 --~~~~~~~tl~~~L~~~~f~~af~e~~l~P~~aaiwst-p-~~d~~~~pa~~~~~f~~nhGll~l~~rp~wrtV~ggS~ 220 (447)
T COG2907 145 --NAGQGDTTLAQYLKQRNFGRAFVEDFLQPLVAAIWST-P-LADASRYPACNFLVFTDNHGLLYLPKRPTWRTVAGGSR 220 (447)
T ss_pred --hhcCCCccHHHHHHhcCccHHHHHHhHHHHHHHHhcC-c-HhhhhhhhHHHHHHHHhccCceecCCCCceeEcccchH
Confidence 112245899999999988876664 333222 22221 0 111111112222333333332 24446788889999
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECC
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDP 284 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~ 284 (441)
+..+.|. +..+++|.++++|.+|..--+.++.+..+|++-+.|.||.++
T Consensus 221 ~yvq~la---a~~~~~i~t~~~V~~l~rlPdGv~l~~~~G~s~rFD~vViAt 269 (447)
T COG2907 221 AYVQRLA---ADIRGRIETRTPVCRLRRLPDGVVLVNADGESRRFDAVVIAT 269 (447)
T ss_pred HHHHHHh---ccccceeecCCceeeeeeCCCceEEecCCCCccccceeeeec
Confidence 9999884 456788999999999987444445455678888899877654
No 30
>PLN03000 amine oxidase
Probab=99.59 E-value=3e-13 Score=141.73 Aligned_cols=262 Identities=18% Similarity=0.206 Sum_probs=141.8
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA 83 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~ 83 (441)
..+|+|||||++||+||..|++.|++|+|+|+++++||++.|.. .. +. ...+.+|++++|+..
T Consensus 184 ~~~VvIIGaG~aGL~aA~~L~~~G~~V~VlE~~~riGGRi~T~~-~~----g~------------~~~~~~DlGas~i~g 246 (881)
T PLN03000 184 KSSVVIVGAGLSGLAAARQLMRFGFKVTVLEGRKRPGGRVYTKK-ME----AN------------RVGAAADLGGSVLTG 246 (881)
T ss_pred CCCEEEECccHHHHHHHHHHHHCCCcEEEEEccCcCCCCcceec-cc----CC------------CCceEeecCCeEEeC
Confidence 47999999999999999999999999999999999999999887 33 11 123567888888865
Q ss_pred C-c-hHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCccccccc
Q psy2620 84 N-G-SLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDI 161 (441)
Q Consensus 84 ~-~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~ 161 (441)
. + ++..++.+.++.-+ ... ....+++.+|+.. +.+....+ ...+..+++.+..+.... ...
T Consensus 247 ~~~npl~~L~~qlgl~l~-~~~-~~~~ly~~~Gk~v--~~~~~~~v---------e~~fn~lLd~~~~lr~l~----~~~ 309 (881)
T PLN03000 247 TLGNPLGIIARQLGSSLY-KVR-DKCPLYRVDGKPV--DPDVDLKV---------EVAFNQLLDKASKLRQLM----GDV 309 (881)
T ss_pred CCccHHHHHHHHcCCcee-ecC-CCCeEEEeCCcCC--chhhhhhH---------HHHHHHHHHHHHHHHHHh----ccc
Confidence 4 2 45556677776421 111 1122344566543 22110010 011112222211111000 000
Q ss_pred CCCCCcHHHHHHHh----C--CCcchhHHHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhh-CCCCeeeecCCcchH
Q psy2620 162 NPQSATTAQLYDKF----G--LDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARY-GKSPYLYPMYGLGEL 234 (441)
Q Consensus 162 ~~~~~s~~~~l~~~----~--l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~-G~~~~~~~~gG~~~l 234 (441)
. .+.++.++++.+ + +.++.+.++...+... .+........+. . .+......+ ..+.+....||++.|
T Consensus 310 ~-~D~SLg~aLe~~~~~~g~~~t~e~~~Ll~w~lanL---E~~~as~ls~LS-l-~~wdqd~~~e~~G~~~~v~GG~~~L 383 (881)
T PLN03000 310 S-MDVSLGAALETFRQVSGNDVATEEMGLFNWHLANL---EYANAGLVSKLS-L-AFWDQDDPYDMGGDHCFLPGGNGRL 383 (881)
T ss_pred C-cCCcHHHHHHHHHHHHcccCCHHHHHHHHHHHHHH---hcccccCHHHHH-H-HHhhhcccccCCCceEEeCCCHHHH
Confidence 0 124454433321 1 1111111221111100 000000011111 0 011110111 122456678999999
Q ss_pred HHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCC-------------Ccccc------cccc
Q psy2620 235 PQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSY-------------VQDRV------KKLN 295 (441)
Q Consensus 235 ~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~-------------~~~~~------~~~~ 295 (441)
+++|++.+ .|+++++|++|...++.+ .|.++++++.||+||++... +|... ...+
T Consensus 384 ieaLa~~L-----~I~Ln~~Vt~I~~~~dgV-~V~~~~~~~~AD~VIvTVPlgVLk~~~I~F~PpLP~~K~~AI~rL~~G 457 (881)
T PLN03000 384 VQALAENV-----PILYEKTVQTIRYGSNGV-KVIAGNQVYEGDMVLCTVPLGVLKNGSIKFVPELPQRKLDCIKRLGFG 457 (881)
T ss_pred HHHHHhhC-----CcccCCcEEEEEECCCeE-EEEECCcEEEeceEEEcCCHHHHhhCceeeCCCCCHHHHHHHHcCCCc
Confidence 99998765 389999999998866554 35566678999999985431 12111 1257
Q ss_pred ceEEEEEEecCCCCCCC
Q psy2620 296 QVIRCICLMDHPIPNTK 312 (441)
Q Consensus 296 ~~~~~~~~~~~~~~~~~ 312 (441)
.+.|+++.++++ .|..
T Consensus 458 ~l~KViL~Fd~~-FW~~ 473 (881)
T PLN03000 458 LLNKVAMLFPYV-FWST 473 (881)
T ss_pred ceEEEEEEeCCc-cccC
Confidence 889999999886 5543
No 31
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=99.56 E-value=1.6e-13 Score=131.67 Aligned_cols=45 Identities=24% Similarity=0.348 Sum_probs=42.7
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 47 (441)
...||||||+|++||+||+.|.++|++|+|||+++++||++.+..
T Consensus 6 ~~~~viivGaGlaGL~AA~eL~kaG~~v~ilEar~r~GGR~~t~r 50 (450)
T COG1231 6 KTADVIIVGAGLAGLSAAYELKKAGYQVQILEARDRVGGRSLTAR 50 (450)
T ss_pred CCCcEEEECCchHHHHHHHHHhhcCcEEEEEeccCCcCceeEEEe
Confidence 468999999999999999999999999999999999999998876
No 32
>KOG0029|consensus
Probab=99.47 E-value=4.9e-13 Score=134.36 Aligned_cols=75 Identities=27% Similarity=0.298 Sum_probs=57.7
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceee
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLM 82 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~ 82 (441)
+..+|||||||++||+||.+|.+.|.+|+|||+++++||++.|+. .. +. + .+|++.+++.
T Consensus 14 ~~~~VIVIGAGiaGLsAArqL~~~G~~V~VLEARdRvGGRI~t~~-~~----~~--------------~-~vd~Gas~~~ 73 (501)
T KOG0029|consen 14 KKKKVIVIGAGLAGLSAARQLQDFGFDVLVLEARDRVGGRIYTFK-SE----GG--------------D-HVDLGASVLT 73 (501)
T ss_pred CCCcEEEECCcHHHHHHHHHHHHcCCceEEEeccCCcCceeEEEe-cC----CC--------------C-eeecCCceec
Confidence 357999999999999999999999999999999999999999988 22 11 1 3677777775
Q ss_pred cC-c-hHHHHHHHhCCc
Q psy2620 83 AN-G-SLVKLLIHTGVT 97 (441)
Q Consensus 83 ~~-~-~~~~~l~~~~~~ 97 (441)
.. + ++.-+..+.++.
T Consensus 74 g~~~npl~~l~~qlgl~ 90 (501)
T KOG0029|consen 74 GVYNNPLALLSKQLGLE 90 (501)
T ss_pred CcCccHHHHHHHHhCcc
Confidence 44 3 444445556654
No 33
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=99.44 E-value=6.8e-13 Score=129.66 Aligned_cols=68 Identities=22% Similarity=0.256 Sum_probs=57.6
Q ss_pred CeeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 223 PYLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 223 ~~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
.+..+.+| ...++++|.+.+++.|++++++++|++|..+++++.+|.+++.+++||+||.++++|...
T Consensus 135 ~~~~~~~g~i~~~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~~~v~gv~~~~g~i~ad~vV~a~G~~s~~ 205 (358)
T PF01266_consen 135 GVFFPEGGVIDPRRLIQALAAEAQRAGVEIRTGTEVTSIDVDGGRVTGVRTSDGEIRADRVVLAAGAWSPQ 205 (358)
T ss_dssp EEEETTEEEEEHHHHHHHHHHHHHHTT-EEEESEEEEEEEEETTEEEEEEETTEEEEECEEEE--GGGHHH
T ss_pred hhcccccccccccchhhhhHHHHHHhhhhccccccccchhhcccccccccccccccccceeEeccccccee
Confidence 35567777 789999999999999999999999999999999999999876569999999999998755
No 34
>KOG1276|consensus
Probab=99.42 E-value=1.4e-10 Score=109.94 Aligned_cols=223 Identities=17% Similarity=0.183 Sum_probs=133.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeE--EEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceee
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKV--LHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLM 82 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V--~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~ 82 (441)
.+|+|||||++||++|++|++.+-+| +++|+.+++||.++|.. -+ +.+.++.+|.-+.
T Consensus 12 ~~vaVvGGGiSGL~aay~L~r~~p~~~i~l~Ea~~RvGGwirS~r-~~-------------------ng~ifE~GPrtlr 71 (491)
T KOG1276|consen 12 MTVAVVGGGISGLCAAYYLARLGPDVTITLFEASPRVGGWIRSDR-MQ-------------------NGFIFEEGPRTLR 71 (491)
T ss_pred ceEEEECCchhHHHHHHHHHhcCCCceEEEEecCCcccceeeecc-CC-------------------CceeeccCCCccC
Confidence 58999999999999999999999776 45999999999999843 11 2455667787776
Q ss_pred cCch----HHHHHHHhCCcceeEEEEecc-----eEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhccc
Q psy2620 83 ANGS----LVKLLIHTGVTRYLEFKSVEG-----SYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEA 153 (441)
Q Consensus 83 ~~~~----~~~~l~~~~~~~~l~~~~~~~-----~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~ 153 (441)
..++ .++++.++|+.+.+.-..... .+.+..|++..+|.+........+. .+.+.-+..|+....+-...
T Consensus 72 pag~~g~~~l~lv~dLGl~~e~~~i~~~~paaknr~l~~~~~L~~vP~sl~~s~~~~l~-p~~k~L~~a~l~e~fr~~~~ 150 (491)
T KOG1276|consen 72 PAGPGGAETLDLVSDLGLEDELQPIDISHPAAKNRFLYVPGKLPTVPSSLVGSLKFSLQ-PFGKPLLEAFLRELFRKKVS 150 (491)
T ss_pred cCCcchhHHHHHHHHcCccceeeecCCCChhhhheeeccCcccccCCcccccccccccC-cccchhHHHHHhhhccccCC
Confidence 5554 778888888875444332221 2456678888888875442221111 22333333333322211101
Q ss_pred CcccccccCCCCCcHHHHHHH-hCCCcchhHHHHHHhhcccCccccchhHHHHHHH----H----HHH-------HHHh-
Q psy2620 154 DPKTWKDINPQSATTAQLYDK-FGLDPNTKDFTGHALALYRDDEYINDLAIHTIRR----I----KLY-------SDSL- 216 (441)
Q Consensus 154 ~~~~~~~~~~~~~s~~~~l~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~----~~~-------~~s~- 216 (441)
-+..++|+.+|+++ || +++.+.+...+ ..+-|..+|..-.+.. + +.| +..+
T Consensus 151 -------~~~~dESV~sF~~RrfG--~eV~d~~isp~---i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~ 218 (491)
T KOG1276|consen 151 -------DPSADESVESFARRRFG--KEVADRLISPF---IRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKF 218 (491)
T ss_pred -------CCCccccHHHHHHHhhh--HHHHHHHHHHH---hCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHH
Confidence 11246899999975 44 45555442221 1112222332221111 1 000 1110
Q ss_pred hh---------------hCCCCeeeecCCcchHHHHHHHHHHHcCcEEEcccceeEEEE
Q psy2620 217 AR---------------YGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVI 260 (441)
Q Consensus 217 ~~---------------~G~~~~~~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~ 260 (441)
++ .+..+....+||++.++++|++.+....+.|.++-++..+..
T Consensus 219 ~~~~~k~~e~~~~~~~~~e~~~~~sl~gGle~lP~a~~~~L~~~~v~i~~~~~~~~~sk 277 (491)
T KOG1276|consen 219 ARKRTKKAETALSAQAKKEKWTMFSLKGGLETLPKALRKSLGEREVSISLGLKLSGNSK 277 (491)
T ss_pred HhhcCCCccchhhhhhcccccchhhhhhhHhHhHHHHHHHhcccchhhhcccccccccc
Confidence 00 011123456799999999999999888888888888888765
No 35
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=99.41 E-value=2.6e-12 Score=127.53 Aligned_cols=66 Identities=20% Similarity=0.240 Sum_probs=53.2
Q ss_pred eeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 224 YLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
+..|.+| ...++++|.+.++..|++++++++|.+|..+++.+ .|.++++++.||.||.+++.|...
T Consensus 138 l~~p~~g~vd~~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~~~~-~V~~~~g~i~ad~vV~A~G~~s~~ 206 (393)
T PRK11728 138 IFVPSTGIVDYRAVAEAMAELIQARGGEIRLGAEVTALDEHANGV-VVRTTQGEYEARTLINCAGLMSDR 206 (393)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCEEEcCCEEEEEEecCCeE-EEEECCCEEEeCEEEECCCcchHH
Confidence 4445555 47899999999999999999999999998766654 566655589999999999988643
No 36
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=99.41 E-value=6.1e-12 Score=119.06 Aligned_cols=65 Identities=9% Similarity=0.132 Sum_probs=53.0
Q ss_pred Ceeeec-CCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCC--CCc
Q psy2620 223 PYLYPM-YGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPS--YVQ 288 (441)
Q Consensus 223 ~~~~~~-gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~--~~~ 288 (441)
+-.+|. .....|.++|.+.+++.|++++++++|.+|..++. ...+.+ +|++++||.+|.+.+ .||
T Consensus 101 Gr~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~-~f~l~t~~g~~i~~d~lilAtGG~S~P 169 (408)
T COG2081 101 GRMFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS-GFRLDTSSGETVKCDSLILATGGKSWP 169 (408)
T ss_pred ceecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc-eEEEEcCCCCEEEccEEEEecCCcCCC
Confidence 446777 66889999999999999999999999999988763 355666 556899999988766 455
No 37
>KOG2820|consensus
Probab=99.39 E-value=9.8e-11 Score=107.72 Aligned_cols=67 Identities=15% Similarity=0.152 Sum_probs=53.3
Q ss_pred eeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEE--eCCEEEEEEe-CCeEEEcCEEEECCCCCcccc
Q psy2620 225 LYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVI--ENGKVVGVRS-GTEIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 225 ~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~--~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~~ 291 (441)
..+.|| ..+-..+|...++.+|+.++-+..|+.+.. +++..++|++ +|.++.|+++|.++++|.+.+
T Consensus 143 ~n~~gGvi~a~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e~~~~v~V~Tt~gs~Y~akkiI~t~GaWi~kl 215 (399)
T KOG2820|consen 143 VNESGGVINAAKSLKALQDKARELGVIFRDGEKVKFIKFVDEEGNHVSVQTTDGSIYHAKKIIFTVGAWINKL 215 (399)
T ss_pred ccccccEeeHHHHHHHHHHHHHHcCeEEecCcceeeEeeccCCCceeEEEeccCCeeecceEEEEecHHHHhh
Confidence 344455 356778888889999999999999999875 4566677775 788899999999999986543
No 38
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=99.38 E-value=2.3e-12 Score=126.83 Aligned_cols=63 Identities=13% Similarity=0.142 Sum_probs=49.1
Q ss_pred CeeeecCC-cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCC
Q psy2620 223 PYLYPMYG-LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPS 285 (441)
Q Consensus 223 ~~~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~ 285 (441)
...||.-. ...+.++|.+.+++.|++|+++++|++|..+++++..|++ +++++.||.||.+.+
T Consensus 99 gr~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~~~~f~v~~~~~~~~~a~~vILAtG 163 (409)
T PF03486_consen 99 GRVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKEDGVFGVKTKNGGEYEADAVILATG 163 (409)
T ss_dssp TEEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEETTEEEEEEETTTEEEEESEEEE---
T ss_pred CEECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecCCceeEeeccCcccccCCEEEEecC
Confidence 35666653 6789999999999999999999999999998888899999 789999999998765
No 39
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=99.36 E-value=4.3e-12 Score=123.79 Aligned_cols=65 Identities=23% Similarity=0.221 Sum_probs=51.7
Q ss_pred eeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeE-EEcCEEEECCCCCc
Q psy2620 224 YLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEI-ARCKQVYCDPSYVQ 288 (441)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~-~~a~~vI~~~~~~~ 288 (441)
...|.+| .++++.+|++.+.++|+++++|++|+.|..+++.++.+.+ +|++ ++|+.||.+++...
T Consensus 142 l~~p~~giV~~~~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~dg~~~~~~~~g~~~~~ak~Vin~AGl~A 211 (429)
T COG0579 142 LLVPSGGIVDPGELTRALAEEAQANGVELRLNTEVTGIEKQSDGVFVLNTSNGEETLEAKFVINAAGLYA 211 (429)
T ss_pred EEcCCCceEcHHHHHHHHHHHHHHcCCEEEecCeeeEEEEeCCceEEEEecCCcEEEEeeEEEECCchhH
Confidence 3445555 6789999999999999999999999999986654444554 5655 99999999988654
No 40
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=99.35 E-value=8.3e-12 Score=124.23 Aligned_cols=68 Identities=24% Similarity=0.189 Sum_probs=55.0
Q ss_pred CeeeecCC--cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeC----C--eEEEcCEEEECCCCCcccc
Q psy2620 223 PYLYPMYG--LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSG----T--EIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 223 ~~~~~~gG--~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~----g--~~~~a~~vI~~~~~~~~~~ 291 (441)
++.|+.+= ..+|+-..++.+.++|+++++.++|+++..+++ ++||+.. | .+++|+.||.++++|...+
T Consensus 153 a~~y~D~~vddaRLv~~~a~~A~~~Ga~il~~~~v~~~~re~~-v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i 228 (532)
T COG0578 153 AFRYPDGVVDDARLVAANARDAAEHGAEILTYTRVESLRREGG-VWGVEVEDRETGETYEIRARAVVNAAGPWVDEI 228 (532)
T ss_pred eEEEccceechHHHHHHHHHHHHhcccchhhcceeeeeeecCC-EEEEEEEecCCCcEEEEEcCEEEECCCccHHHH
Confidence 34444433 347888888889999999999999999999888 8999852 3 4699999999999998654
No 41
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=99.33 E-value=1.4e-11 Score=126.96 Aligned_cols=61 Identities=15% Similarity=0.071 Sum_probs=52.5
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCCCcccc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~~ 291 (441)
...++.++++.+..+|++++++++|++|..+++++++|++ ++ .+|+|++||.+++.|...+
T Consensus 148 p~rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~d~~~g~~~~i~A~~VVnAaG~wa~~l 214 (546)
T PRK11101 148 PFRLTAANMLDAKEHGAQILTYHEVTGLIREGDTVCGVRVRDHLTGETQEIHAPVVVNAAGIWGQHI 214 (546)
T ss_pred HHHHHHHHHHHHHhCCCEEEeccEEEEEEEcCCeEEEEEEEEcCCCcEEEEECCEEEECCChhHHHH
Confidence 4678889999999999999999999999988888888874 23 5799999999999997654
No 42
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=99.31 E-value=3e-11 Score=122.71 Aligned_cols=60 Identities=27% Similarity=0.349 Sum_probs=50.4
Q ss_pred cCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeC---C--eEEEcCEEEECCCCC
Q psy2620 228 MYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSG---T--EIARCKQVYCDPSYV 287 (441)
Q Consensus 228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~---g--~~~~a~~vI~~~~~~ 287 (441)
.+|...+...|.+.+++.|++++++++|++|..+++++++|... + ..++|+.||++++.+
T Consensus 127 ~g~g~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~g~v~gv~~~~~~g~~~~i~a~~VIlAtGg~ 191 (466)
T PRK08274 127 WGGGKALVNALYRSAERLGVEIRYDAPVTALELDDGRFVGARAGSAAGGAERIRAKAVVLAAGGF 191 (466)
T ss_pred cCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCeEEEEEEEccCCceEEEECCEEEECCCCC
Confidence 44556789999999999999999999999999888899988752 2 578999999988754
No 43
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.31 E-value=2.1e-12 Score=129.52 Aligned_cols=74 Identities=15% Similarity=0.212 Sum_probs=55.3
Q ss_pred hhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecC-chHHHHHH
Q psy2620 14 LKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMAN-GSLVKLLI 92 (441)
Q Consensus 14 ~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~-~~~~~~l~ 92 (441)
++||+||++|+++|++|+|||+++++||++.|++ ... ..+.+|++++++... ..+.+++.
T Consensus 1 iaGL~aA~~L~~~G~~v~vlEa~~r~GGr~~t~~-~~~------------------~g~~~e~G~~~~~~~~~~~~~~~~ 61 (450)
T PF01593_consen 1 IAGLAAAYYLAKAGYDVTVLEASDRVGGRIRTFR-FDN------------------PGFTFELGAHRFFGMYPNLLNLID 61 (450)
T ss_dssp HHHHHHHHHHHHTTTEEEEEESSSSSBTTS-EEE-ETT------------------TTEEEESSS-EEETTSHHHHHHHH
T ss_pred ChHHHHHHHHHhCCCCEEEEEcCCCCCcceEEec-CCc------------------cceeecCCcccccccchhhHHHHH
Confidence 6899999999999999999999999999999988 330 146788899888644 44677777
Q ss_pred HhCCcceeEEEEec
Q psy2620 93 HTGVTRYLEFKSVE 106 (441)
Q Consensus 93 ~~~~~~~l~~~~~~ 106 (441)
+.++...+......
T Consensus 62 ~l~~~~~~~~~~~~ 75 (450)
T PF01593_consen 62 ELGLELSLETFPFP 75 (450)
T ss_dssp HHTHHTTEEEEEES
T ss_pred Hhhhcccccccccc
Confidence 77765444444433
No 44
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=99.30 E-value=8.3e-11 Score=119.13 Aligned_cols=66 Identities=14% Similarity=0.126 Sum_probs=52.4
Q ss_pred CeeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 223 PYLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 223 ~~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
+...+.+| ...++++|.+.++..|++|+.+++|++|.. + +.+.|++++.+++|++||++++.|...
T Consensus 171 g~~~~~~g~i~P~~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~-~~~~v~t~~g~v~A~~VV~Atga~s~~ 239 (460)
T TIGR03329 171 GFYSPVAASVQPGLLVRGLRRVALELGVEIHENTPMTGLEE-G-QPAVVRTPDGQVTADKVVLALNAWMAS 239 (460)
T ss_pred EEEeCCCeEECHHHHHHHHHHHHHHcCCEEECCCeEEEEee-C-CceEEEeCCcEEECCEEEEcccccccc
Confidence 34556666 678999999999999999999999999974 3 335577765579999999998887543
No 45
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=99.30 E-value=8.4e-11 Score=116.27 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=51.4
Q ss_pred eeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 225 LYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 225 ~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
..+.+| ...+.++|.+.++..|++++.+++|++|..+++.+ .|.+++.++.||+||++++.|...
T Consensus 135 ~~~~~g~i~p~~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~~~~-~v~~~~~~i~a~~vV~aaG~~~~~ 202 (380)
T TIGR01377 135 LDPNGGVLYAEKALRALQELAEAHGATVRDGTKVVEIEPTELLV-TVKTTKGSYQANKLVVTAGAWTSK 202 (380)
T ss_pred EcCCCcEEcHHHHHHHHHHHHHHcCCEEECCCeEEEEEecCCeE-EEEeCCCEEEeCEEEEecCcchHH
Confidence 344444 46788999998999999999999999998766654 466655589999999988887643
No 46
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=99.29 E-value=1.4e-11 Score=123.02 Aligned_cols=68 Identities=16% Similarity=0.162 Sum_probs=51.5
Q ss_pred CeeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEE-eC----CeEEEcCEEEECCCCCccc
Q psy2620 223 PYLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR-SG----TEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 223 ~~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~-~~----g~~~~a~~vI~~~~~~~~~ 290 (441)
++..|..| ...++++|.+.++..|++++.+++|++|..+++.+.... .. +.+++|++||.+++.|...
T Consensus 185 a~~~~~~g~~~~~~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~~~~~v~~~~~~~~~~~~i~a~~vV~a~G~~s~~ 260 (410)
T PRK12409 185 GYYTPSDSTGDIHKFTTGLAAACARLGVQFRYGQEVTSIKTDGGGVVLTVQPSAEHPSRTLEFDGVVVCAGVGSRA 260 (410)
T ss_pred EEEcCCCCccCHHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEcCCCCccceEecCEEEECCCcChHH
Confidence 34555544 457788999999999999999999999987766654322 22 2379999999999998643
No 47
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=99.28 E-value=1.5e-10 Score=115.83 Aligned_cols=67 Identities=18% Similarity=0.338 Sum_probs=56.5
Q ss_pred eeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 224 YLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
+..|..| ...++++|.+.++..|++|+++++|++|..+++++++|++++.++.||+||.+++.|...
T Consensus 190 ~~~p~~g~~~p~~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~t~~~~~~a~~VV~a~G~~~~~ 259 (416)
T PRK00711 190 LRLPNDETGDCQLFTQRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGVITADAYVVALGSYSTA 259 (416)
T ss_pred EECCCcccCCHHHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEEEEEEeCCcEEeCCEEEECCCcchHH
Confidence 4556554 558899999999999999999999999988788877888877789999999999988643
No 48
>PF13450 NAD_binding_8: NAD(P)-binding Rossmann-like domain; PDB: 3KA7_A 1V0J_D 3INR_B 3KYB_B 3GF4_A 2BI8_A 3INT_B 1WAM_A 2BI7_A 3MJ4_G ....
Probab=99.27 E-value=5.8e-12 Score=91.38 Aligned_cols=39 Identities=23% Similarity=0.454 Sum_probs=37.0
Q ss_pred EECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccC
Q psy2620 9 VLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47 (441)
Q Consensus 9 IIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 47 (441)
|||||++||++|++|+++|++|+|+|+++++||++++..
T Consensus 1 IiGaG~sGl~aA~~L~~~g~~v~v~E~~~~~GG~~~~~~ 39 (68)
T PF13450_consen 1 IIGAGISGLAAAYYLAKAGYRVTVFEKNDRLGGRARSFR 39 (68)
T ss_dssp EES-SHHHHHHHHHHHHTTSEEEEEESSSSSSGGGCEEE
T ss_pred CEeeCHHHHHHHHHHHHCCCcEEEEecCcccCcceeEEE
Confidence 899999999999999999999999999999999999887
No 49
>KOG0685|consensus
Probab=99.27 E-value=8.1e-11 Score=113.28 Aligned_cols=72 Identities=19% Similarity=0.358 Sum_probs=58.8
Q ss_pred CcccEEEECCChhHHHHHhhhccCC-CeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeeccccee
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFL 81 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l 81 (441)
....|||||||++||+||-+|-+.| .+|+|||+.+++||++.|.. +. +-.++++.+|+
T Consensus 20 ~~~kIvIIGAG~AGLaAA~rLle~gf~~~~IlEa~dRIGGRI~ti~-~~--------------------d~~ielGAqwi 78 (498)
T KOG0685|consen 20 GNAKIVIIGAGIAGLAAATRLLENGFIDVLILEASDRIGGRIHTIP-FA--------------------DGVIELGAQWI 78 (498)
T ss_pred CCceEEEECCchHHHHHHHHHHHhCCceEEEEEeccccCceEeeEE-cC--------------------CCeEeecceee
Confidence 3468999999999999999999655 89999999999999999988 43 23688889988
Q ss_pred ec-Cc-hHHHHHHHhC
Q psy2620 82 MA-NG-SLVKLLIHTG 95 (441)
Q Consensus 82 ~~-~~-~~~~~l~~~~ 95 (441)
.. .+ ++.++..+.|
T Consensus 79 hG~~gNpVY~la~~~g 94 (498)
T KOG0685|consen 79 HGEEGNPVYELAKEYG 94 (498)
T ss_pred cCCCCChHHHHHHHhC
Confidence 75 33 6667777655
No 50
>PLN02976 amine oxidase
Probab=99.27 E-value=1.1e-10 Score=126.42 Aligned_cols=44 Identities=20% Similarity=0.226 Sum_probs=41.5
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 47 (441)
.+||+|||+|++|+++|++|+++|++|+|||+++.+||++.+..
T Consensus 693 ~~dV~IIGAG~AGLaAA~~L~~~G~~V~VlEa~~~vGGri~t~~ 736 (1713)
T PLN02976 693 RKKIIVVGAGPAGLTAARHLQRQGFSVTVLEARSRIGGRVYTDR 736 (1713)
T ss_pred CCcEEEECchHHHHHHHHHHHHCCCcEEEEeeccCCCCceeecc
Confidence 47999999999999999999999999999999999999987765
No 51
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.25 E-value=4.2e-11 Score=117.35 Aligned_cols=240 Identities=19% Similarity=0.148 Sum_probs=126.9
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecCc
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMANG 85 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~~ 85 (441)
.|+|+|||++||+||.+|+.+|++|+|+|+++++||.++|+. ... |- .+--.++ -++....
T Consensus 2 rVai~GaG~AgL~~a~~La~~g~~vt~~ea~~~~GGk~~s~~-~~d---g~--------------~~E~glh-~f~~~Y~ 62 (485)
T COG3349 2 RVAIAGAGLAGLAAAYELADAGYDVTLYEARDRLGGKVASWR-DSD---GN--------------HVEHGLH-VFFGCYY 62 (485)
T ss_pred eEEEEcccHHHHHHHHHHHhCCCceEEEeccCccCceeeeee-cCC---CC--------------eeeeeeE-EechhHH
Confidence 599999999999999999999999999999999999999987 220 11 0101111 1223335
Q ss_pred hHHHHHHHhCCcceeEEEEecceEEE---eCCeEE--eC-----CCChH-HHhhhccCChHHHHHHHHHHHHHHhhcccC
Q psy2620 86 SLVKLLIHTGVTRYLEFKSVEGSYVF---KGGKIS--KV-----PVDQK-EALASDLMGLFEKRRFRNFLVYIQEFSEAD 154 (441)
Q Consensus 86 ~~~~~l~~~~~~~~l~~~~~~~~~~~---~~g~~~--~~-----p~~~~-~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~ 154 (441)
+++.++.+.+....+.++..-..+.- ..|.+- .. |.... +.+....+ ..+...+|.-.........
T Consensus 63 n~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~p~p~~~~~~~l~~~~~---~~~~~~~~~~~l~~~~~g~ 139 (485)
T COG3349 63 NLLTLLKELPIEDRLQLREHTKTFVGSGTRPGAIGRFARPDAPQPTNGLKAFLRLPQL---PRREKIRFVLRLGDAPIGA 139 (485)
T ss_pred HHHHHhhhCCchheeehHhhhhhhcccCCCCCcccccccCCCCCcchhhhhhhhcccc---CHHHHhHHhhccccccchh
Confidence 67788888776544443332222211 112111 11 11111 11111111 1222222221111110000
Q ss_pred cccccccCCCCCcHHHHHHHhCCCcchh--HHHHHHhhcccCc-cccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCC-
Q psy2620 155 PKTWKDINPQSATTAQLYDKFGLDPNTK--DFTGHALALYRDD-EYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYG- 230 (441)
Q Consensus 155 ~~~~~~~~~~~~s~~~~l~~~~l~~~~~--~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG- 230 (441)
...++.+ ++.++.+|+++.+..+... .+...+.++...+ +-. ++...+. +.. ..++...+.+-....+|+
T Consensus 140 ~~~~~el--d~~s~~d~l~~~g~~~~~~k~~~~~~~~~l~f~~~e~~--sa~~~lt-~~~-~~~~~~~~~~i~~~~~g~~ 213 (485)
T COG3349 140 DRSLREL--DKISFADWLKEKGAREGAYKAAFAPIALALTFIDPEGC--SARFFLT-ILN-LFLIVTLEASILRNLRGSP 213 (485)
T ss_pred HHHHHHH--hcccHHHHHHHhCCCchhHHHHHHHHHHhhcccCcccC--cchhHHH-HHH-HHHHhccCcchhhhhcCCC
Confidence 1112223 4689999999987754332 2443344433221 111 1111111 111 112222232333445566
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEe----CCEEEEEEeCCe
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIE----NGKVVGVRSGTE 273 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~----~~~~~~v~~~g~ 273 (441)
...+.+.+.++..+.|.+++++.+|+.|..+ +.+++|+...+.
T Consensus 214 ~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~~~~~~~~g~~~~~~ 260 (485)
T COG3349 214 DEVLLQPWTEYIPERGRKVHADYPVKELDLDGARGLAKVTGGDVTGP 260 (485)
T ss_pred cceeeehhhhhccccCceeeccceeeeeeccccccccceEeeeecCc
Confidence 4557788888899999999999999999863 345778776553
No 52
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=99.23 E-value=2.1e-10 Score=111.56 Aligned_cols=236 Identities=13% Similarity=0.148 Sum_probs=119.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeecC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMAN 84 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~~ 84 (441)
+||+|||||++||++|+.|++.|.+|+|+|+++.+||.+.+.. .. ++ ...+.+++++...
T Consensus 2 ~DvvIIGaG~aGlsaA~~La~~G~~V~viEk~~~iGG~~~~~~-~~----g~---------------~~~~~G~h~f~t~ 61 (377)
T TIGR00031 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGGNCYDEV-DE----TI---------------LFHQYGPHIFHTN 61 (377)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCeEEEEecCCCCCCceeeec-CC----Cc---------------eEEeecceeEecC
Confidence 7999999999999999999999999999999999999886654 11 11 1124566766654
Q ss_pred c-hHHHHHHHhCCcceeEEEEecceEEEeCCeEEeCCCChHHHhhhccCChHHHHHHHHHHHHHHhhcccCcccccccCC
Q psy2620 85 G-SLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINP 163 (441)
Q Consensus 85 ~-~~~~~l~~~~~~~~l~~~~~~~~~~~~~g~~~~~p~~~~~~~~~~~~~~~~k~~l~~~~~~~~~~~~~~~~~~~~~~~ 163 (441)
. .+.+.+.+..-.. .+. .....+.+|+++.+|.+. ..+. .+.....+..+..++......... .
T Consensus 62 ~~~v~~~~~~~~~~~--~~~--~~~~~~~~g~~~~~P~~~-~~i~-~l~~~~~~~~~~~~l~~~~~~~~~-------~-- 126 (377)
T TIGR00031 62 NQYVWDYISPFFELN--NYQ--HRVLALYNNLDLTLPFNF-NQFR-KLLGVKDAQELQNFFNAQFKYGDH-------V-- 126 (377)
T ss_pred cHHHHHHHHhhcccc--cee--EEEEEEECCeEEccCCCH-HHHH-HhcccchHHHHHHHHHHHhhcccC-------C--
Confidence 4 3444443321001 111 112345578899999873 3332 112212333344444322211000 0
Q ss_pred CCCcHHHHH----HHhCCCcchhHHHHHHhhcccCccccchhHHHHHH---HHHHHHHHhhhh-CCCCeeeecCCcchHH
Q psy2620 164 QSATTAQLY----DKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIR---RIKLYSDSLARY-GKSPYLYPMYGLGELP 235 (441)
Q Consensus 164 ~~~s~~~~l----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~~s~~~~-G~~~~~~~~gG~~~l~ 235 (441)
...++.+|. +++| +.+.+.+ ...+..-.|-.+|...... ++-..+.--.+| -..-+.+|++|..++.
T Consensus 127 ~~~~~~e~~d~~~~~~G--~~lye~f---f~~Yt~K~Wg~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt~~~ 201 (377)
T TIGR00031 127 PLEELQEIADPDIQLLY--QFLYQKV---YKPYTVKQWGLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYTKLF 201 (377)
T ss_pred CCCCHHHHHHHHHHHHH--HHHHHHh---ccccCceeeCCChHHCCHHHeEecceEecCCCCcccccccccccccHHHHH
Confidence 012333333 2222 1121111 1111111111112110000 000000000111 2234689999988888
Q ss_pred HHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCc
Q psy2620 236 QSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 288 (441)
++|+ +..+.+|++|+.+..+..++++ +..+++.+. +.||.+ ++++
T Consensus 202 ~~ml---~~~~i~v~l~~~~~~~~~~~~~---~~~~~~~~~-~~vi~T-g~id 246 (377)
T TIGR00031 202 EKML---DHPLIDVKLNCHINLLKDKDSQ---LHFANKAIR-KPVIYT-GLID 246 (377)
T ss_pred HHHH---hcCCCEEEeCCccceeeccccc---eeecccccc-CcEEEe-cCch
Confidence 8874 4457889999988877654443 222322333 667764 4444
No 53
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=99.23 E-value=2.5e-10 Score=112.77 Aligned_cols=59 Identities=15% Similarity=0.176 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
...++.++.+.+...|++++++++|++|..+++. +.|.+++.+++||+||.+++.|...
T Consensus 148 p~~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~a~~vV~A~G~~~~~ 206 (376)
T PRK11259 148 PELAIKAHLRLAREAGAELLFNEPVTAIEADGDG-VTVTTADGTYEAKKLVVSAGAWVKD 206 (376)
T ss_pred HHHHHHHHHHHHHHCCCEEECCCEEEEEEeeCCe-EEEEeCCCEEEeeEEEEecCcchhh
Confidence 4678888888888899999999999999887665 4566655589999999999988644
No 54
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=99.21 E-value=2.1e-10 Score=114.96 Aligned_cols=55 Identities=22% Similarity=0.305 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCC
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYV 287 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~ 287 (441)
.+-+.|.+.+++.|++++.+++|+++..++++++++..+|++++|+.||.+.+..
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~g~v~~v~~~g~~i~A~~VI~A~G~~ 163 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVN 163 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeCCEEEEEEcCCcEEECCEEEEEeCCC
Confidence 3445566777889999999999999988888887787778889999999887764
No 55
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=99.20 E-value=1.2e-10 Score=118.94 Aligned_cols=60 Identities=18% Similarity=0.015 Sum_probs=48.4
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCCCcccc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~~ 291 (441)
..+++.++++.+..+|++++++++|++|..+++. ++|.+ +| .+++|+.||.+++.|...+
T Consensus 154 ~~rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~~g~~~~i~a~~VVnAaG~wa~~l 219 (508)
T PRK12266 154 DARLVVLNARDAAERGAEILTRTRVVSARRENGL-WHVTLEDTATGKRYTVRARALVNAAGPWVKQF 219 (508)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEeCCE-EEEEEEEcCCCCEEEEEcCEEEECCCccHHHH
Confidence 3678888888899999999999999999876664 45543 24 4799999999999997554
No 56
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=99.19 E-value=2e-10 Score=117.47 Aligned_cols=60 Identities=17% Similarity=0.018 Sum_probs=48.3
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CC----eEEEcCEEEECCCCCcccc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GT----EIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g----~~~~a~~vI~~~~~~~~~~ 291 (441)
...++.+++..++.+|++++.+++|++|..+++. ++|.+ ++ .+++|+.||.+++.|...+
T Consensus 154 ~~rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~~~-~~v~~~~~~g~~~~i~a~~VVnAaG~wa~~l 218 (502)
T PRK13369 154 DARLVVLNALDAAERGATILTRTRCVSARREGGL-WRVETRDADGETRTVRARALVNAAGPWVTDV 218 (502)
T ss_pred HHHHHHHHHHHHHHCCCEEecCcEEEEEEEcCCE-EEEEEEeCCCCEEEEEecEEEECCCccHHHH
Confidence 3678888888899999999999999999876554 45654 32 4699999999999997654
No 57
>PRK10015 oxidoreductase; Provisional
Probab=99.19 E-value=3.6e-10 Score=113.18 Aligned_cols=54 Identities=24% Similarity=0.322 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCC
Q psy2620 234 LPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYV 287 (441)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~ 287 (441)
+-+.|.+.+++.|++++.+++|+.|..+++++.+++.++.+++|+.||.+.+..
T Consensus 110 fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~~~v~~v~~~~~~i~A~~VI~AdG~~ 163 (429)
T PRK10015 110 LDPWLMEQAEQAGAQFIPGVRVDALVREGNKVTGVQAGDDILEANVVILADGVN 163 (429)
T ss_pred HHHHHHHHHHHcCCEEECCcEEEEEEEeCCEEEEEEeCCeEEECCEEEEccCcc
Confidence 444566677788999999999999988888888888777889999999987763
No 58
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=99.16 E-value=1.2e-09 Score=109.16 Aligned_cols=58 Identities=17% Similarity=0.202 Sum_probs=48.3
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEeCCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRSGTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 289 (441)
..++.+|++.+...|++++.+++|++|..+ ++++++|+++..++.|++||++++.|..
T Consensus 183 ~~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~~~~~~v~t~~g~i~a~~vVvaagg~~~ 241 (407)
T TIGR01373 183 DAVAWGYARGADRRGVDIIQNCEVTGFIRRDGGRVIGVETTRGFIGAKKVGVAVAGHSS 241 (407)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCCcEEEEEeCCceEECCEEEECCChhhH
Confidence 467888999999999999999999999764 5777788876557999999888877754
No 59
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=99.15 E-value=6.5e-10 Score=103.15 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=37.6
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
++||+|||||++||+||++|+++|++|+++|++..+||..
T Consensus 25 ~~DVvIVGgGpAGl~AA~~la~~G~~V~liEk~~~~Ggg~ 64 (257)
T PRK04176 25 EVDVAIVGAGPSGLTAAYYLAKAGLKVAVFERKLSFGGGM 64 (257)
T ss_pred cCCEEEECccHHHHHHHHHHHhCCCeEEEEecCCCCCCcc
Confidence 5899999999999999999999999999999999888754
No 60
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=99.14 E-value=6e-10 Score=112.61 Aligned_cols=60 Identities=17% Similarity=0.114 Sum_probs=50.7
Q ss_pred cchHHHHHHHHHHH----cC--cEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 231 LGELPQSFARLSAI----YG--GTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 231 ~~~l~~~l~~~~~~----~G--~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
.+.++++|.+.++. .| ++|+++++|++|..+++..+.|.++..+++|++||++++.|...
T Consensus 210 ~~~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~~~~~~V~T~~G~i~A~~VVvaAG~~S~~ 275 (497)
T PTZ00383 210 YQKLSESFVKHARRDALVPGKKISINLNTEVLNIERSNDSLYKIHTNRGEIRARFVVVSACGYSLL 275 (497)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecCCCeEEEEECCCEEEeCEEEECcChhHHH
Confidence 47899999999988 78 67899999999988766677788765589999999999988643
No 61
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=99.12 E-value=1.3e-09 Score=115.32 Aligned_cols=66 Identities=18% Similarity=0.135 Sum_probs=52.9
Q ss_pred CeeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeC-CeEEEcCEEEECCCCCccc
Q psy2620 223 PYLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSG-TEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 223 ~~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~-g~~~~a~~vI~~~~~~~~~ 290 (441)
++.+|.+| ...++++|.+.+.. |++++.+++|++|..+++++. |.++ |..+.|+.||.+++.|...
T Consensus 396 g~~~p~~G~v~p~~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~~~~~-v~t~~g~~~~ad~VV~A~G~~s~~ 465 (662)
T PRK01747 396 GIFYPQGGWLCPAELCRALLALAGQ-QLTIHFGHEVARLEREDDGWQ-LDFAGGTLASAPVVVLANGHDAAR 465 (662)
T ss_pred cEEeCCCCeeCHHHHHHHHHHhccc-CcEEEeCCEeeEEEEeCCEEE-EEECCCcEEECCEEEECCCCCccc
Confidence 45566666 46899999999888 999999999999988777654 6664 5567899999999988644
No 62
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=99.11 E-value=9e-10 Score=109.14 Aligned_cols=66 Identities=18% Similarity=0.188 Sum_probs=52.4
Q ss_pred eeeecCC---cchHHHHHHHHHHHcC-cEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 224 YLYPMYG---LGELPQSFARLSAIYG-GTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
+..+.+| ...++++|++.+.+.| ..+..+++|..+..++ ++++|.+++.++.|++||.+++.|...
T Consensus 145 ~~~~~~~~~~p~~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~-~~~~v~t~~g~i~a~~vv~a~G~~~~~ 214 (387)
T COG0665 145 LFDPTGGHLDPRLLTRALAAAAEELGVVIIEGGTPVTSLERDG-RVVGVETDGGTIEADKVVLAAGAWAGE 214 (387)
T ss_pred EecCCCCcCCHHHHHHHHHHHHHhcCCeEEEccceEEEEEecC-cEEEEEeCCccEEeCEEEEcCchHHHH
Confidence 4555555 4689999999999999 4666699999987654 678888866569999999999988654
No 63
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=99.11 E-value=7.7e-10 Score=108.80 Aligned_cols=61 Identities=20% Similarity=0.150 Sum_probs=46.4
Q ss_pred eeecCC---cchHHHHHHHHHHHc-CcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 225 LYPMYG---LGELPQSFARLSAIY-GGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 225 ~~~~gG---~~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
.++.+| ...++++|.+.+.+. |++++.+++|++|.. + .|++++.+++|++||.+++.|...
T Consensus 135 ~~~~~g~v~p~~~~~~l~~~~~~~~Gv~i~~~t~V~~i~~--~---~v~t~~g~i~a~~VV~A~G~~s~~ 199 (365)
T TIGR03364 135 HSPDELRVEPREAIPALAAYLAEQHGVEFHWNTAVTSVET--G---TVRTSRGDVHADQVFVCPGADFET 199 (365)
T ss_pred EcCCCeeECHHHHHHHHHHHHHhcCCCEEEeCCeEEEEec--C---eEEeCCCcEEeCEEEECCCCChhh
Confidence 344444 467888998887765 999999999999953 2 466655568999999999988644
No 64
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=99.10 E-value=2.1e-09 Score=99.42 Aligned_cols=40 Identities=33% Similarity=0.486 Sum_probs=37.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
++||+|||||++||+||++|+++|++|+|+||+..+||..
T Consensus 21 ~~DVvIVGgGpAGL~aA~~la~~G~~V~vlEk~~~~Ggg~ 60 (254)
T TIGR00292 21 ESDVIIVGAGPSGLTAAYYLAKNGLKVCVLERSLAFGGGS 60 (254)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCccc
Confidence 6899999999999999999999999999999999988764
No 65
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=99.09 E-value=1.1e-09 Score=112.01 Aligned_cols=56 Identities=21% Similarity=0.262 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe---CC--eEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS---GT--EIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~---~g--~~~~a~~vI~~~~~~ 287 (441)
..+.+.|.+.+++.|++++++++|++|..+++++++|.. ++ .++.|+.||++.+-+
T Consensus 190 ~~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~g~V~Gv~~~~~~g~~~~i~a~~VVlAtGG~ 250 (506)
T PRK06481 190 GYLVDGLLKNVQERKIPLFVNADVTKITEKDGKVTGVKVKINGKETKTISSKAVVVTTGGF 250 (506)
T ss_pred HHHHHHHHHHHHHcCCeEEeCCeeEEEEecCCEEEEEEEEeCCCeEEEEecCeEEEeCCCc
Confidence 368899999999999999999999999887888888875 22 469999999877644
No 66
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=99.08 E-value=1.1e-09 Score=114.31 Aligned_cols=61 Identities=21% Similarity=0.225 Sum_probs=51.4
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEe--CCEEEEEEe----CCe--EEEcCEEEECCCCCcccc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIE--NGKVVGVRS----GTE--IARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~~----~g~--~~~a~~vI~~~~~~~~~~ 291 (441)
...++.+|++.++.+|++++.+++|++|..+ ++++++|+. +++ +++|+.||.+++.|...+
T Consensus 231 p~rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~g~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l 299 (627)
T PLN02464 231 DSRLNVALACTAALAGAAVLNYAEVVSLIKDESTGRIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEV 299 (627)
T ss_pred HHHHHHHHHHHHHhCCcEEEeccEEEEEEEecCCCcEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHH
Confidence 5789999999999999999999999999876 577877764 343 689999999999997554
No 67
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=99.07 E-value=3.7e-09 Score=105.01 Aligned_cols=56 Identities=9% Similarity=-0.045 Sum_probs=44.9
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+.+.|.+.++..|++++.+++|+++..+++.+. |++ +|++++||.||.+.+.++
T Consensus 113 ~~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~a~~vV~AdG~~S 169 (392)
T PRK08773 113 DLLVDRLWAALHAAGVQLHCPARVVALEQDADRVR-LRLDDGRRLEAALAIAADGAAS 169 (392)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCeEEEEEecCCeEE-EEECCCCEEEeCEEEEecCCCc
Confidence 35667777778888999999999999987666544 554 578899999999888765
No 68
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=99.06 E-value=9.3e-10 Score=110.26 Aligned_cols=59 Identities=20% Similarity=0.269 Sum_probs=48.0
Q ss_pred CcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCCCc
Q psy2620 230 GLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSYVQ 288 (441)
Q Consensus 230 G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~ 288 (441)
+...+.+.|.+.++++|++|+++++|+++..++++|+||.. +| .+++|+.||.+++-+.
T Consensus 139 ~g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~g~V~Gv~~~~~~~g~~~~i~A~aVIlAtGG~~ 203 (417)
T PF00890_consen 139 GGKALIEALAKAAEEAGVDIRFNTRVTDLITEDGRVTGVVAENPADGEFVRIKAKAVILATGGFG 203 (417)
T ss_dssp HHHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTEEEEEEEEETTTCEEEEEEESEEEE----BG
T ss_pred cHHHHHHHHHHHHhhcCeeeeccceeeeEEEeCCceeEEEEEECCCCeEEEEeeeEEEeccCccc
Confidence 45678999999999999999999999999999999999984 34 4688999999877654
No 69
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=99.05 E-value=3.4e-09 Score=109.30 Aligned_cols=59 Identities=12% Similarity=0.049 Sum_probs=47.8
Q ss_pred cCCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe--CC--eEEEcC-EEEECCCCC
Q psy2620 228 MYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS--GT--EIARCK-QVYCDPSYV 287 (441)
Q Consensus 228 ~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~--~g--~~~~a~-~vI~~~~~~ 287 (441)
.+| ..|+.+|.+.+++.|++|+++++|+++..++|+|+||.. +| ..+.|+ .||++++-+
T Consensus 214 ~~G-~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~a~kaVILAtGGf 277 (564)
T PRK12845 214 AGG-QALAAGLFAGVLRAGIPIWTETSLVRLTDDGGRVTGAVVDHRGREVTVTARRGVVLAAGGF 277 (564)
T ss_pred CCh-HHHHHHHHHHHHHCCCEEEecCEeeEEEecCCEEEEEEEEECCcEEEEEcCCEEEEecCCc
Confidence 345 899999999999999999999999999877899999864 44 346675 688876644
No 70
>PRK07121 hypothetical protein; Validated
Probab=99.05 E-value=4.5e-09 Score=107.43 Aligned_cols=59 Identities=24% Similarity=0.306 Sum_probs=48.4
Q ss_pred CcchHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEe--CC--eEEEc-CEEEECCCCCc
Q psy2620 230 GLGELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRS--GT--EIARC-KQVYCDPSYVQ 288 (441)
Q Consensus 230 G~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~--~g--~~~~a-~~vI~~~~~~~ 288 (441)
+...+.+.|.+.+++.|++|+++++|++|..+ +++++||.. ++ ..++| +.||++++-+.
T Consensus 175 ~g~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~~~~~i~a~k~VVlAtGg~~ 239 (492)
T PRK07121 175 GGAMLMDPLAKRAAALGVQIRYDTRATRLIVDDDGRVVGVEARRYGETVAIRARKGVVLAAGGFA 239 (492)
T ss_pred chHHHHHHHHHHHHhCCCEEEeCCEEEEEEECCCCCEEEEEEEeCCcEEEEEeCCEEEECCCCcC
Confidence 34578999999999999999999999999876 568999875 33 46889 89999887654
No 71
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=99.04 E-value=4.7e-09 Score=106.50 Aligned_cols=67 Identities=15% Similarity=0.055 Sum_probs=49.6
Q ss_pred eeeecCC---cchHHHHHHHHHHHcC-cEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCCCccc
Q psy2620 224 YLYPMYG---LGELPQSFARLSAIYG-GTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~ 290 (441)
...|.+| .+.++++|.+.++..| ++++++++|++|..+++..+.|.+ +| .+++|++||++++.|...
T Consensus 172 l~~p~~g~Vd~~~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~dg~~~v~~~~~~~G~~~~i~A~~VVvaAGg~s~~ 248 (494)
T PRK05257 172 TRIEIGTDVNFGALTRQLVGYLQKQGNFELQLGHEVRDIKRNDDGSWTVTVKDLKTGEKRTVRAKFVFIGAGGGALP 248 (494)
T ss_pred EEcCCceEECHHHHHHHHHHHHHhCCCeEEEeCCEEEEEEECCCCCEEEEEEEcCCCceEEEEcCEEEECCCcchHH
Confidence 4455555 5789999999999887 699999999999874332122322 24 369999999999988644
No 72
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=99.02 E-value=5.2e-09 Score=106.00 Aligned_cols=68 Identities=10% Similarity=0.027 Sum_probs=51.3
Q ss_pred eeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEE---e-CC--eEEEcCEEEECCCCCcccc
Q psy2620 224 YLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR---S-GT--EIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~---~-~g--~~~~a~~vI~~~~~~~~~~ 291 (441)
...|.+| ...++++|.+.++..|++++++++|++|..+++..+.|. + +| .+++|++||++++.|...+
T Consensus 167 l~~p~~g~Vdp~~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~~~v~v~~~~~~~g~~~~i~A~~VV~AAG~~s~~L 243 (483)
T TIGR01320 167 NWAAEGTDVDFGALTKQLLGYLVQNGTTIRFGHEVRNLKRQSDGSWTVTVKNTRTGGKRTLNTRFVFVGAGGGALPL 243 (483)
T ss_pred EEeCCCEEECHHHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCCeEEEEEeeccCCceEEEECCEEEECCCcchHHH
Confidence 4455565 578999999999999999999999999987543222232 2 23 3699999999999987543
No 73
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=98.99 E-value=1.2e-09 Score=104.16 Aligned_cols=63 Identities=16% Similarity=0.217 Sum_probs=45.1
Q ss_pred eecCCcchHHHHHHHHHHHc-CcEEEcccceeEEEEe--CCEEEEEEe---CC----eEEEcCEEEECCCCCc
Q psy2620 226 YPMYGLGELPQSFARLSAIY-GGTYMLDKPVDEIVIE--NGKVVGVRS---GT----EIARCKQVYCDPSYVQ 288 (441)
Q Consensus 226 ~~~gG~~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~--~~~~~~v~~---~g----~~~~a~~vI~~~~~~~ 288 (441)
.+.|--.....++...+... +.+|++++.|++|..+ ++++++|+. ++ ..+.++.||++++.+.
T Consensus 186 ~~~g~r~s~~~~~L~~a~~~~n~~l~~~~~V~~i~~~~~~~~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~ 258 (296)
T PF00732_consen 186 CPNGARSSAATTYLPPALKRPNLTLLTNARVTRIIFDGDGGRATGVEYVDNDGGVQRRIVAAKEVILAAGAIG 258 (296)
T ss_dssp ECTTCBBHHHHHHHHHHTTTTTEEEEESEEEEEEEEETTSTEEEEEEEEETTTSEEEEEEEEEEEEE-SHHHH
T ss_pred ccchhceehhhcccchhhccCCccEEcCcEEEEEeeeccccceeeeeeeecCCcceeeeccceeEEeccCCCC
Confidence 34444455556665555555 8999999999999875 889999984 23 3567889999988763
No 74
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=98.99 E-value=5.5e-09 Score=103.77 Aligned_cols=43 Identities=23% Similarity=0.428 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
++|||||||||++|++||+.|+++|.+|+|||+++.+|....+
T Consensus 2 ~~~DVvIVGaGPAGs~aA~~la~~G~~VlvlEk~~~~G~k~~~ 44 (396)
T COG0644 2 MEYDVVIVGAGPAGSSAARRLAKAGLDVLVLEKGSEPGAKPCC 44 (396)
T ss_pred ceeeEEEECCchHHHHHHHHHHHcCCeEEEEecCCCCCCCccc
Confidence 3699999999999999999999999999999999999987654
No 75
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=98.98 E-value=7.1e-09 Score=104.51 Aligned_cols=67 Identities=10% Similarity=-0.018 Sum_probs=50.5
Q ss_pred CeeeecCC---cchHHHHHHHHHHH-cCcEEEcccceeEEEEe-CCEEEEEE---e-CC--eEEEcCEEEECCCCCccc
Q psy2620 223 PYLYPMYG---LGELPQSFARLSAI-YGGTYMLDKPVDEIVIE-NGKVVGVR---S-GT--EIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 223 ~~~~~~gG---~~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~-~~~~~~v~---~-~g--~~~~a~~vI~~~~~~~~~ 290 (441)
+...|.++ .+.++++|++.+.. .|++++++++|+.|..+ ++.. .|. + ++ .+++||+||++++.|...
T Consensus 172 Al~~p~~~~VD~~~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d~~w-~v~v~~t~~g~~~~i~Ad~VV~AAGawS~~ 249 (497)
T PRK13339 172 ASKIDEGTDVNFGALTRKLAKHLESHPNAQVKYNHEVVDLERLSDGGW-EVTVKDRNTGEKREQVADYVFIGAGGGAIP 249 (497)
T ss_pred EEECCCceecCHHHHHHHHHHHHHhCCCcEEEeCCEEEEEEECCCCCE-EEEEEecCCCceEEEEcCEEEECCCcchHH
Confidence 45566666 67899999999865 48999999999999876 5443 232 3 34 269999999999998743
No 76
>PRK06175 L-aspartate oxidase; Provisional
Probab=98.97 E-value=1.3e-08 Score=102.00 Aligned_cols=56 Identities=7% Similarity=0.020 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHH-cCcEEEcccceeEEEEeCCEEEEEEe--CCe--EEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAI-YGGTYMLDKPVDEIVIENGKVVGVRS--GTE--IARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~v~~--~g~--~~~a~~vI~~~~~~ 287 (441)
..+.++|.+.++. .|++|+++++|++|..++++++||.. +++ ++.|+.||.+++-+
T Consensus 128 ~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~~~v~Gv~~~~~g~~~~i~Ak~VILAtGG~ 188 (433)
T PRK06175 128 KKVEKILLKKVKKRKNITIIENCYLVDIIENDNTCIGAICLKDNKQINIYSKVTILATGGI 188 (433)
T ss_pred HHHHHHHHHHHHhcCCCEEEECcEeeeeEecCCEEEEEEEEECCcEEEEEcCeEEEccCcc
Confidence 4688888887765 59999999999999888888888652 443 68999999877643
No 77
>PRK02106 choline dehydrogenase; Validated
Probab=98.94 E-value=2.1e-08 Score=104.16 Aligned_cols=38 Identities=32% Similarity=0.526 Sum_probs=34.9
Q ss_pred CCCcccEEEECCChhHHHHHhhhcc-CCCeEEEEcCCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSV-SGKKVLHIDRNKY 38 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~-~G~~V~vlE~~~~ 38 (441)
|..+||+||||+|.+|+++|..|++ +|++|+|||+.+.
T Consensus 2 ~~~~~D~iIVG~G~aG~vvA~rLae~~g~~VlvlEaG~~ 40 (560)
T PRK02106 2 TTMEYDYIIIGAGSAGCVLANRLSEDPDVSVLLLEAGGP 40 (560)
T ss_pred CCCcCcEEEECCcHHHHHHHHHHHhCCCCeEEEecCCCc
Confidence 4467999999999999999999999 8999999999864
No 78
>PRK06847 hypothetical protein; Provisional
Probab=98.93 E-value=1.2e-08 Score=100.66 Aligned_cols=56 Identities=18% Similarity=0.135 Sum_probs=44.6
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+.+.|.+.+...|++++.+++|++|..+++.+ .|.. +|+++.||.||.+.+.++
T Consensus 107 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~~-~v~~~~g~~~~ad~vI~AdG~~s 163 (375)
T PRK06847 107 PALARILADAARAAGADVRLGTTVTAIEQDDDGV-TVTFSDGTTGRYDLVVGADGLYS 163 (375)
T ss_pred HHHHHHHHHHHHHhCCEEEeCCEEEEEEEcCCEE-EEEEcCCCEEEcCEEEECcCCCc
Confidence 3566777777788899999999999998766654 3444 788899999999988765
No 79
>PRK07190 hypothetical protein; Provisional
Probab=98.93 E-value=1.2e-08 Score=103.84 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCc
Q psy2620 234 LPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 288 (441)
+-+.|.+.++..|++++.+++|++|..+++.++....+|++++|++||.+.+...
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~~v~v~~~~g~~v~a~~vVgADG~~S 165 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQAGCLTTLSNGERIQSRYVIGADGSRS 165 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeeEEEECCCcEEEeCEEEECCCCCH
Confidence 4445556677889999999999999887666543334678999999999887653
No 80
>COG0562 Glf UDP-galactopyranose mutase [Cell envelope biogenesis, outer membrane]
Probab=98.93 E-value=1.2e-08 Score=93.73 Aligned_cols=119 Identities=17% Similarity=0.375 Sum_probs=74.5
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccCchHHHhhhhCCCCCCccccCCCCceeeecccceeec
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMA 83 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p~~~~~g~~~~~~idl~p~~l~~ 83 (441)
.+|.+|||+|++|++.|..|++.|++|+|+||++++||.+-+.. -.+ .|.. .-.-+|+++..
T Consensus 1 ~fd~lIVGaGlsG~V~A~~a~~~gk~VLIvekR~HIGGNaYde~-d~~--tGIl---------------vHkYGpHIFHT 62 (374)
T COG0562 1 MFDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGGNAYDEA-DDQ--TGIL---------------VHKYGPHIFHT 62 (374)
T ss_pred CCcEEEECCchhHHHHHHHHHHcCCEEEEEeccccCCCcccccc-CCC--CCeE---------------EeeccCceeec
Confidence 38999999999999999999999999999999999999996544 110 0110 01236888876
Q ss_pred Cc-hHHHHHHHhCCcceeEEEEec-ceEEEeCCeEEeCCCChHHHhhhccCC-hHHHHHHHHHHHHH
Q psy2620 84 NG-SLVKLLIHTGVTRYLEFKSVE-GSYVFKGGKISKVPVDQKEALASDLMG-LFEKRRFRNFLVYI 147 (441)
Q Consensus 84 ~~-~~~~~l~~~~~~~~l~~~~~~-~~~~~~~g~~~~~p~~~~~~~~~~~~~-~~~k~~l~~~~~~~ 147 (441)
.+ .+.+.+.. +.+|.+.. ....+.+|..+.+|.+. ..+. ++.+ -+......+|....
T Consensus 63 ~~~~Vwdyv~~-----F~e~~~Y~hrVla~~ng~~~~lP~nl-~ti~-ql~G~~~~p~~a~~~i~~~ 122 (374)
T COG0562 63 DNKRVWDYVNQ-----FTEFNPYQHRVLALVNGQLYPLPFNL-NTIN-QLFGKNFTPDEARKFIEEQ 122 (374)
T ss_pred CchHHHHHHhh-----hhhhhhhccceeEEECCeeeeccccH-HHHH-HHhCccCCHHHHHHHHHHh
Confidence 65 33343322 22333322 22345688999999883 4332 2333 22334445555433
No 81
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.93 E-value=1.9e-08 Score=104.48 Aligned_cols=55 Identities=13% Similarity=0.078 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..|...|.+.+...|+++++++.|+++..+ +|+|+||.. +| ..+.|+.||++++-
T Consensus 143 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 143 HALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHhhhcCCEEEeCcEEEEEEECCCCEEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 468899988888889999999999999884 789999874 34 46889999987664
No 82
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.93 E-value=1.9e-08 Score=104.05 Aligned_cols=56 Identities=21% Similarity=0.335 Sum_probs=46.8
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe--CC--eEEEcC-EEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS--GT--EIARCK-QVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~--~g--~~~~a~-~vI~~~~~~ 287 (441)
..+...|.+.+++.|++++++++|++|+.++++|+||.. +| .++.|+ .||++++-+
T Consensus 208 ~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~g~~~~i~A~~aVIlAtGG~ 268 (557)
T PRK12844 208 AALIGRMLEAALAAGVPLWTNTPLTELIVEDGRVVGVVVVRDGREVLIRARRGVLLASGGF 268 (557)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEEEECCeEEEEEecceEEEecCCc
Confidence 568889999999999999999999999988999999875 45 458885 588876654
No 83
>PRK06185 hypothetical protein; Provisional
Probab=98.92 E-value=2.7e-08 Score=99.41 Aligned_cols=56 Identities=21% Similarity=0.257 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHc-CcEEEcccceeEEEEeCCEEEEEEe---CC-eEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIY-GGTYMLDKPVDEIVIENGKVVGVRS---GT-EIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~~---~g-~~~~a~~vI~~~~~~~ 288 (441)
.+.+.|.+.++.. |++++.+++|+++..+++++++|.. +| .+++|+.||.+.|.+.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~~~v~~v~~~~~~g~~~i~a~~vI~AdG~~S 169 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEGGRVTGVRARTPDGPGEIRADLVVGADGRHS 169 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeCCEEEEEEEEcCCCcEEEEeCEEEECCCCch
Confidence 4455566656554 7899999999999988888776653 45 4799999999888764
No 84
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=98.92 E-value=8.6e-08 Score=99.75 Aligned_cols=59 Identities=19% Similarity=0.178 Sum_probs=50.0
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe--CC--eEEEc-CEEEECCCCCcc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS--GT--EIARC-KQVYCDPSYVQD 289 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~--~g--~~~~a-~~vI~~~~~~~~ 289 (441)
...++++|.+.+++.|++|+++++|++|..+++++++|.. ++ .+++| +.||++++.|..
T Consensus 216 g~~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~g~v~GV~~~~~~~~~~i~a~k~VVlAtGg~~~ 279 (581)
T PRK06134 216 GNALVARLLKSAEDLGVRIWESAPARELLREDGRVAGAVVETPGGLQEIRARKGVVLAAGGFPH 279 (581)
T ss_pred HHHHHHHHHHHHHhCCCEEEcCCEEEEEEEeCCEEEEEEEEECCcEEEEEeCCEEEEcCCCccc
Confidence 3568899999999999999999999999888899998875 33 35889 889999888764
No 85
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=98.92 E-value=3.5e-08 Score=103.09 Aligned_cols=55 Identities=13% Similarity=0.189 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEE-eCCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..+..+|.+.+...|++++.++.|+++.. ++|+|.||.. +| ..+.|+.||.+++-
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 227 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDEDGECRGVIAMSMEDGSIHRFRAHYTVIATGG 227 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCCCEEEEEEEEECCCCeEEEEECCcEEEeCCC
Confidence 47889999989899999999999999988 6889999863 34 46899999987653
No 86
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=98.89 E-value=7.2e-08 Score=98.93 Aligned_cols=56 Identities=27% Similarity=0.390 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHc-CcEEEcccceeEEEEeCCEEEEEEe--CC--eEEEcC-EEEECCCCC
Q psy2620 232 GELPQSFARLSAIY-GGTYMLDKPVDEIVIENGKVVGVRS--GT--EIARCK-QVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~~--~g--~~~~a~-~vI~~~~~~ 287 (441)
..+...|.+.+... |++|+++++|++++.++++|+||.. +| .+++|+ .||++++-+
T Consensus 173 ~~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~g~v~Gv~~~~~g~~~~i~A~k~VIlAtGG~ 234 (513)
T PRK12837 173 RALIGRFLAALARFPNARLRLNTPLVELVVEDGRVVGAVVERGGERRRVRARRGVLLAAGGF 234 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEeCCEEEEEEecCCEEEEEEEEECCcEEEEEeCceEEEeCCCc
Confidence 35777887777664 9999999999999888899999874 44 468896 688877654
No 87
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.88 E-value=3.9e-08 Score=101.88 Aligned_cols=55 Identities=16% Similarity=0.083 Sum_probs=46.1
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..+.++|.+.+...|++++.++.++++..++|+|+||.. +| ..+.|+.||++++-
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDNKKVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEECCEEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 468888988888889999999999999998999999874 23 46899999987763
No 88
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=98.88 E-value=5.2e-08 Score=97.22 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=34.4
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
||..+||+|||||++||++|..|+++|++|+|+|++
T Consensus 1 ~m~~~dV~IvGaG~~Gl~~A~~L~~~G~~v~viE~~ 36 (405)
T PRK08850 1 MMQSVDVAIIGGGMVGLALAAALKESDLRIAVIEGQ 36 (405)
T ss_pred CCCcCCEEEECccHHHHHHHHHHHhCCCEEEEEcCC
Confidence 677899999999999999999999999999999996
No 89
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=98.88 E-value=1.9e-08 Score=101.53 Aligned_cols=57 Identities=25% Similarity=0.315 Sum_probs=46.7
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEe---CCe--EEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRS---GTE--IARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~---~g~--~~~a~~vI~~~~~~~ 288 (441)
..+.+.|.+.+++.|++++++++|++|..+ ++++++|.. +++ .+.++.||++++.+.
T Consensus 130 ~~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~g~v~Gv~~~~~~g~~~~~~a~~VVlAtGg~~ 192 (439)
T TIGR01813 130 AEIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQGTVVGVVVKGKGKGIYIKAAKAVVLATGGFG 192 (439)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEeeEeEECCCCcEEEEEEEeCCCeEEEEecceEEEecCCCC
Confidence 468899999999999999999999999884 578888764 233 478999999887654
No 90
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.88 E-value=1.8e-08 Score=100.55 Aligned_cols=55 Identities=4% Similarity=-0.092 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
.+.++|.+.++..|++++.+++|+++..+++.+ .|.. +|++++||.||.+.+.+.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v-~v~~~~g~~~~a~~vVgAdG~~S 168 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGDDW-LLTLADGRQLRAPLVVAADGANS 168 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCCeE-EEEECCCCEEEeCEEEEecCCCc
Confidence 455667676777899999999999998766554 3554 677899999999888765
No 91
>PRK09126 hypothetical protein; Provisional
Probab=98.88 E-value=2.4e-08 Score=99.21 Aligned_cols=38 Identities=32% Similarity=0.360 Sum_probs=35.5
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
|+ ++||+|||||++||++|..|+++|++|+|+||.+.+
T Consensus 1 ~~-~~dviIvGgG~aGl~~A~~L~~~G~~v~v~E~~~~~ 38 (392)
T PRK09126 1 MM-HSDIVVVGAGPAGLSFARSLAGSGLKVTLIERQPLA 38 (392)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEeCCCcc
Confidence 66 699999999999999999999999999999998765
No 92
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=98.87 E-value=6.5e-08 Score=100.16 Aligned_cols=44 Identities=34% Similarity=0.587 Sum_probs=40.8
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC--CCCCccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK--YYGGESA 44 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~--~~GG~~~ 44 (441)
|..++||||||+|.+||+||..++++|.+|+|||+.+ .+||.+.
T Consensus 1 ~~~~~DVvVVG~G~AGl~AAl~Aa~~G~~VivlEK~~~~~~GG~s~ 46 (549)
T PRK12834 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLDQENEANLGGQAF 46 (549)
T ss_pred CCccCCEEEECcCHHHHHHHHHHHHCCCeEEEEeCCCCCCCCCcee
Confidence 6778999999999999999999999999999999999 7888753
No 93
>KOG2844|consensus
Probab=98.87 E-value=2.3e-08 Score=99.72 Aligned_cols=60 Identities=20% Similarity=0.201 Sum_probs=54.0
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCccc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~ 290 (441)
...++++|++.++..|+.|.-+++|++|..+.++..+|++.-..|+|.+||.+++.|...
T Consensus 186 P~~lC~ala~~A~~~GA~viE~cpV~~i~~~~~~~~gVeT~~G~iet~~~VNaaGvWAr~ 245 (856)
T KOG2844|consen 186 PAGLCQALARAASALGALVIENCPVTGLHVETDKFGGVETPHGSIETECVVNAAGVWARE 245 (856)
T ss_pred HHHHHHHHHHHHHhcCcEEEecCCcceEEeecCCccceeccCcceecceEEechhHHHHH
Confidence 578999999999999999999999999999888788999865579999999999999754
No 94
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.87 E-value=6e-08 Score=101.10 Aligned_cols=55 Identities=11% Similarity=0.159 Sum_probs=45.8
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeC-CEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIEN-GKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..+.++|.+.+...|+++++++.|+++..++ |+|+||.. +| ..+.|+.||++++-
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDGGVCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCCCEEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 3688999998888999999999999998865 78999873 34 47899999987764
No 95
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=98.87 E-value=8.1e-08 Score=99.96 Aligned_cols=56 Identities=16% Similarity=0.178 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~ 287 (441)
..+..+|.+.+...|++++.++.|++|..++|+++||.. +| ..+.|+.||.+++-+
T Consensus 129 ~~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG~ 190 (566)
T TIGR01812 129 HALLHTLYEQCLKLGVSFFNEYFALDLIHDDGRVRGVVAYDLKTGEIVFFRAKAVVLATGGY 190 (566)
T ss_pred HHHHHHHHHHHHHcCCEEEeccEEEEEEEeCCEEEEEEEEECCCCcEEEEECCeEEECCCcc
Confidence 367888888888889999999999999988899988863 45 368999999877643
No 96
>PRK08163 salicylate hydroxylase; Provisional
Probab=98.86 E-value=4.4e-08 Score=97.48 Aligned_cols=40 Identities=20% Similarity=0.287 Sum_probs=36.9
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
|+...||+|||||++||++|..|+++|++|+|+||++..+
T Consensus 1 ~~~~~~V~IvGaGiaGl~~A~~L~~~g~~v~v~Er~~~~~ 40 (396)
T PRK08163 1 MTKVTPVLIVGGGIGGLAAALALARQGIKVKLLEQAAEIG 40 (396)
T ss_pred CCCCCeEEEECCcHHHHHHHHHHHhCCCcEEEEeeCcccc
Confidence 7778999999999999999999999999999999987543
No 97
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=98.85 E-value=1.9e-09 Score=93.67 Aligned_cols=41 Identities=29% Similarity=0.402 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
+.||+|||||++||+||++||++|.+|+++||+-.+||...
T Consensus 30 esDViIVGaGPsGLtAAyyLAk~g~kV~i~E~~ls~GGG~w 70 (262)
T COG1635 30 ESDVIIVGAGPSGLTAAYYLAKAGLKVAIFERKLSFGGGIW 70 (262)
T ss_pred hccEEEECcCcchHHHHHHHHhCCceEEEEEeecccCCccc
Confidence 46999999999999999999999999999999999998863
No 98
>PRK12839 hypothetical protein; Provisional
Probab=98.85 E-value=5.6e-08 Score=100.65 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=39.9
Q ss_pred CCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 2 ~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
+.++||||||+|.+|++||+.|+++|.+|+|||++..+||.+.
T Consensus 6 ~~~~dv~ViG~G~aG~~aa~~~~~~g~~v~~iek~~~~gg~~~ 48 (572)
T PRK12839 6 THTYDVVVVGSGAGGLSAAVAAAYGGAKVLVVEKASTCGGATA 48 (572)
T ss_pred CCcCCEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcccc
Confidence 3579999999999999999999999999999999999999764
No 99
>PRK08013 oxidoreductase; Provisional
Probab=98.84 E-value=2.5e-08 Score=99.28 Aligned_cols=38 Identities=21% Similarity=0.281 Sum_probs=35.0
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
|+ .+||+|||||++|+++|+.|+++|++|+|+|+++..
T Consensus 1 m~-~~dV~IvGaGpaGl~~A~~La~~G~~v~viE~~~~~ 38 (400)
T PRK08013 1 MQ-SVDVVIAGGGMVGLAVACGLQGSGLRVAVLEQRVPE 38 (400)
T ss_pred CC-cCCEEEECcCHHHHHHHHHHhhCCCEEEEEeCCCCc
Confidence 54 599999999999999999999999999999998763
No 100
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=98.84 E-value=9.1e-08 Score=100.07 Aligned_cols=55 Identities=7% Similarity=0.123 Sum_probs=45.7
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..+.++|.+.+...|++++.++.+.++..+ +|++.||.. +| ..+.|+.||.+++-
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSDGACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCCCEEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 468899998888899999999999998876 789999864 35 47899999987664
No 101
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=98.84 E-value=3.3e-08 Score=97.85 Aligned_cols=56 Identities=14% Similarity=0.036 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHcC-cEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYG-GTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+.+.|.+.+.+.| ++++.+++|++|..+++.+ .|.. +|+++.+|.||.+.+...
T Consensus 106 ~~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~~~~-~v~~~~g~~~~~~~vi~adG~~S 163 (385)
T TIGR01988 106 RVLQQALWERLQEYPNVTLLCPARVVELPRHSDHV-ELTLDDGQQLRARLLVGADGANS 163 (385)
T ss_pred HHHHHHHHHHHHhCCCcEEecCCeEEEEEecCCee-EEEECCCCEEEeeEEEEeCCCCC
Confidence 356777878788888 9999999999998766654 3554 678899999998877653
No 102
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=98.84 E-value=7.7e-08 Score=95.40 Aligned_cols=55 Identities=5% Similarity=0.018 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHHcC-cEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYG-GTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+.++|.+.++..| ++++ ++.|+++..+++.+ .|.+ +|++++||.||.+.+.+.
T Consensus 111 ~~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~~~~-~v~~~~g~~~~a~~vI~adG~~S 167 (388)
T PRK07608 111 SLIERALWAALRFQPNLTWF-PARAQGLEVDPDAA-TLTLADGQVLRADLVVGADGAHS 167 (388)
T ss_pred HHHHHHHHHHHHhCCCcEEE-cceeEEEEecCCeE-EEEECCCCEEEeeEEEEeCCCCc
Confidence 356677777788887 8888 99999997666654 4655 667899999999888764
No 103
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=98.83 E-value=1.5e-07 Score=97.83 Aligned_cols=57 Identities=21% Similarity=0.275 Sum_probs=47.9
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe--C-C-eEEEcC-EEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS--G-T-EIARCK-QVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~--~-g-~~~~a~-~vI~~~~~~~ 288 (441)
..+.++|.+.+++.|++|+++++|+++..+++++++|.. . + ..+.++ .||++++-++
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~g~V~GV~~~~~~~~~~i~a~k~VVlAtGg~~ 275 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEGGRVVGARVIDAGGERRITARRGVVLACGGFS 275 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEEcCCceEEEEeCCEEEEcCCCcc
Confidence 568899999999999999999999999988899999875 2 3 257886 6998888776
No 104
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=98.83 E-value=1.5e-07 Score=97.86 Aligned_cols=57 Identities=16% Similarity=0.188 Sum_probs=47.4
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe--CC--eEEEc-CEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS--GT--EIARC-KQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~--~g--~~~~a-~~vI~~~~~~~ 288 (441)
..+.++|.+.++..|++++++++|+++..+++++++|.. +| .++.| +.||++++.+.
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~g~V~GV~~~~~g~~~~i~A~~~VVlAtGg~~ 282 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDHGRVIGATVVQGGVRRRIRARGGVVLATGGFN 282 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeCCEEEEEEEecCCeEEEEEccceEEECCCCcc
Confidence 468899999999999999999999999888899999875 34 35776 57998887654
No 105
>PRK06184 hypothetical protein; Provisional
Probab=98.83 E-value=3.3e-08 Score=101.46 Aligned_cols=55 Identities=11% Similarity=0.012 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEE---eCCeEEEcCEEEECCCCCc
Q psy2620 234 LPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR---SGTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 234 l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~---~~g~~~~a~~vI~~~~~~~ 288 (441)
+-+.|.+.+...|++|+.+++|++|..+++.++... .++++++||+||.+.+...
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~~v~v~~~~~~~~~~i~a~~vVgADG~~S 168 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDADGVTARVAGPAGEETVRARYLVGADGGRS 168 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCCcEEEEEEeCCCeEEEEeCEEEECCCCch
Confidence 445666667778999999999999987665544332 2457899999999888764
No 106
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=98.83 E-value=5.1e-08 Score=96.87 Aligned_cols=56 Identities=11% Similarity=0.099 Sum_probs=46.6
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCC
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYV 287 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~ 287 (441)
...+.+.|.+.+++.|++++++++|++|..+++ .+.|+++++++.||.||.+++.+
T Consensus 104 a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~~-~~~v~~~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 104 AADVLDALLNELKELGVEILTNSKVKSIKKDDN-GFGVETSGGEYEADKVILATGGL 159 (400)
T ss_pred HHHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC-eEEEEECCcEEEcCEEEECCCCc
Confidence 568889999999999999999999999976555 45677777789999999987753
No 107
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=98.82 E-value=2.1e-09 Score=94.03 Aligned_cols=41 Identities=32% Similarity=0.400 Sum_probs=34.8
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
++||+|||||++||+||++|+++|++|+++|++..+||...
T Consensus 17 ~~DV~IVGaGpaGl~aA~~La~~g~kV~v~E~~~~~GGg~~ 57 (230)
T PF01946_consen 17 EYDVAIVGAGPAGLTAAYYLAKAGLKVAVIERKLSPGGGMW 57 (230)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHTS-EEEEESSSS-BTTTT
T ss_pred cCCEEEECCChhHHHHHHHHHHCCCeEEEEecCCCCCcccc
Confidence 58999999999999999999999999999999999998763
No 108
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.82 E-value=4.3e-08 Score=97.26 Aligned_cols=56 Identities=9% Similarity=-0.018 Sum_probs=42.4
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+.+.|.+.+..+|+..+.+++|+++..+++.+. |.+ +|++++||.||.+.+.+.
T Consensus 111 ~~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~~~~~-v~~~~g~~~~a~~vI~AdG~~S 167 (388)
T PRK07494 111 WLLNRALEARVAELPNITRFGDEAESVRPREDEVT-VTLADGTTLSARLVVGADGRNS 167 (388)
T ss_pred HHHHHHHHHHHhcCCCcEEECCeeEEEEEcCCeEE-EEECCCCEEEEeEEEEecCCCc
Confidence 35667777777777766688999999987666644 554 677899999999887764
No 109
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=98.82 E-value=7.6e-08 Score=95.39 Aligned_cols=57 Identities=11% Similarity=0.031 Sum_probs=45.6
Q ss_pred chHHHHHHHHHHHcC-cEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYG-GTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+-++|.+.+...+ ++++.+++|+.+..+++.+..... +|++++||.||.+.|.+.
T Consensus 104 ~~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~~v~v~l~~dG~~~~a~llVgADG~~S 162 (387)
T COG0654 104 SDLLNALLEAARALPNVTLRFGAEVEAVEQDGDGVTVTLSFDGETLDADLLVGADGANS 162 (387)
T ss_pred HHHHHHHHHHHhhCCCcEEEcCceEEEEEEcCCceEEEEcCCCcEEecCEEEECCCCch
Confidence 466777777787776 799999999999988777663334 788999999999888754
No 110
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=98.81 E-value=7.7e-08 Score=95.55 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=33.3
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IvGaGpaGl~~A~~L~~~G~~v~v~E~~~~ 36 (392)
T PRK08243 2 RTQVAIIGAGPAGLLLGQLLHLAGIDSVVLERRSR 36 (392)
T ss_pred cceEEEECCCHHHHHHHHHHHhcCCCEEEEEcCCc
Confidence 58999999999999999999999999999999874
No 111
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.80 E-value=9.8e-08 Score=100.10 Aligned_cols=51 Identities=16% Similarity=0.139 Sum_probs=42.4
Q ss_pred HHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 236 QSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 236 ~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
+.|.+.++..|++|+.++.|+++..++++|+||.. +| ..+.|+.||.+++-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~g~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVDGRARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeCCEEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 66777788889999999999999988899999874 34 36899999987664
No 112
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.80 E-value=9.3e-08 Score=95.74 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=35.2
Q ss_pred CCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 2 ~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
+.++||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 16 ~~~~dV~IvGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 53 (415)
T PRK07364 16 SLTYDVAIVGGGIVGLTLAAALKDSGLRIALIEAQPAE 53 (415)
T ss_pred ccccCEEEECcCHHHHHHHHHHhcCCCEEEEEecCCcc
Confidence 45789999999999999999999999999999998754
No 113
>PLN02985 squalene monooxygenase
Probab=98.80 E-value=1.7e-07 Score=95.88 Aligned_cols=36 Identities=28% Similarity=0.459 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
..+||+|||||++|+++|..|+++|++|+|+||...
T Consensus 42 ~~~DViIVGAG~aGlalA~aLa~~G~~V~vlEr~~~ 77 (514)
T PLN02985 42 GATDVIIVGAGVGGSALAYALAKDGRRVHVIERDLR 77 (514)
T ss_pred CCceEEEECCCHHHHHHHHHHHHcCCeEEEEECcCC
Confidence 368999999999999999999999999999999753
No 114
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=1.3e-07 Score=98.44 Aligned_cols=55 Identities=13% Similarity=0.193 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..|.+.|.+.+...|++++.++.|+++..+ +|++.||.. +| ..+.|+.||.+++-
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDADGDVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCCCeEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 468899988888899999999999999875 688999864 34 36889999987653
No 115
>PRK08401 L-aspartate oxidase; Provisional
Probab=98.79 E-value=1.4e-07 Score=95.65 Aligned_cols=56 Identities=16% Similarity=0.214 Sum_probs=48.2
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 288 (441)
..+.+.|.+.++..|++++.+ .|+.+..+++++++|..+++.+.|+.||++++-+.
T Consensus 120 ~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~g~v~Gv~~~g~~i~a~~VVLATGG~~ 175 (466)
T PRK08401 120 KHIIKILYKHARELGVNFIRG-FAEELAIKNGKAYGVFLDGELLKFDATVIATGGFS 175 (466)
T ss_pred HHHHHHHHHHHHhcCCEEEEe-EeEEEEeeCCEEEEEEECCEEEEeCeEEECCCcCc
Confidence 468899999999999999865 78888878889999988888899999999887664
No 116
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.79 E-value=1.2e-07 Score=98.65 Aligned_cols=56 Identities=20% Similarity=0.200 Sum_probs=47.1
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~ 287 (441)
..+.++|.+.+...|+++++++.|+++..+++++.|+.. +| ..+.|+.||++++-+
T Consensus 135 ~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVlATGG~ 196 (575)
T PRK05945 135 HAILHELVNNLRRYGVTIYDEWYVMRLILEDNQAKGVVMYHIADGRLEVVRAKAVMFATGGY 196 (575)
T ss_pred HHHHHHHHHHHhhCCCEEEeCcEEEEEEEECCEEEEEEEEEcCCCeEEEEECCEEEECCCCC
Confidence 568899999888899999999999999888899888863 44 368999999877654
No 117
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=98.79 E-value=5.6e-08 Score=96.94 Aligned_cols=56 Identities=9% Similarity=0.054 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+.+.|.+.+...|++++.+++|+++..+++.+ .|.. +|+++.||.||.+.+.++
T Consensus 111 ~~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~~v-~v~~~~g~~~~ad~vI~AdG~~S 167 (403)
T PRK07333 111 RVLINALRKRAEALGIDLREATSVTDFETRDEGV-TVTLSDGSVLEARLLVAADGARS 167 (403)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCEE-EEEECCCCEEEeCEEEEcCCCCh
Confidence 4677778888888899999999999998766654 3554 678899999999888764
No 118
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=98.79 E-value=1.4e-07 Score=89.58 Aligned_cols=56 Identities=20% Similarity=0.234 Sum_probs=42.6
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEE-EeCCeEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGV-RSGTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v-~~~g~~~~a~~vI~~~~~~~ 288 (441)
.+-+.|.+.+++.|++++.+++|+++..+++++... +.++.+++||.||.+.+...
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~a~~vv~a~G~~s 148 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHDDRVVVIVRGGEGTVTAKIVIGADGSRS 148 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeCCEEEEEEcCccEEEEeCEEEECCCcch
Confidence 455677777888899999999999998877664322 23457899999998887653
No 119
>PRK07804 L-aspartate oxidase; Provisional
Probab=98.79 E-value=1.5e-07 Score=97.18 Aligned_cols=56 Identities=11% Similarity=0.049 Sum_probs=45.4
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeC-CEEEEEEeC--------C-eEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIEN-GKVVGVRSG--------T-EIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~~~--------g-~~~~a~~vI~~~~~~ 287 (441)
..+.++|.+.++..|++++.++.|+++..++ |+++||... + ..+.|+.||.+++-+
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG~ 209 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGTGAVAGVTLHVLGEGSPDGVGAVHAPAVVLATGGL 209 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCCCeEEEEEEEeccCCCCCcEEEEEcCeEEECCCCC
Confidence 4688999998989999999999999998764 688887641 2 468999999877643
No 120
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=98.78 E-value=6.4e-08 Score=98.79 Aligned_cols=42 Identities=36% Similarity=0.492 Sum_probs=37.6
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCC-CCCCCc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN-KYYGGE 42 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~-~~~GG~ 42 (441)
|+.+|||||||||++|+.||..+|+.|.+|+++|++ +.+|+.
T Consensus 1 ~~~~yDVIVVGGGpAG~eAA~~aAR~G~kV~LiE~~~d~iG~m 43 (618)
T PRK05192 1 MPEEYDVIVVGGGHAGCEAALAAARMGAKTLLLTHNLDTIGQM 43 (618)
T ss_pred CCccceEEEECchHHHHHHHHHHHHcCCcEEEEeccccccccc
Confidence 566799999999999999999999999999999998 466653
No 121
>PRK06834 hypothetical protein; Provisional
Probab=98.78 E-value=5.7e-08 Score=98.92 Aligned_cols=55 Identities=11% Similarity=0.030 Sum_probs=42.9
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
.+-+.|.+.++..|++|+.+++|++|..+++.+. |+. +|++++||+||.+.+..+
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~~v~-v~~~~g~~i~a~~vVgADG~~S 156 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDTGVD-VELSDGRTLRAQYLVGCDGGRS 156 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCCeEE-EEECCCCEEEeCEEEEecCCCC
Confidence 4555666777788999999999999988766543 444 567899999999887764
No 122
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.77 E-value=9e-08 Score=99.43 Aligned_cols=57 Identities=19% Similarity=0.165 Sum_probs=45.5
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEe--CC--eEEEcC-EEEECCCCC
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRS--GT--EIARCK-QVYCDPSYV 287 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~--~g--~~~~a~-~vI~~~~~~ 287 (441)
...+...|.+.++..|++|+++++|++|..+ +|+|+||.. +| .+++|+ .||++++-+
T Consensus 212 g~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~g~V~Gv~~~~~~~~~~i~a~~aVilAtGGf 274 (584)
T PRK12835 212 GQSLVARLRLALKDAGVPLWLDSPMTELITDPDGAVVGAVVEREGRTLRIGARRGVILATGGF 274 (584)
T ss_pred cHHHHHHHHHHHHhCCceEEeCCEEEEEEECCCCcEEEEEEEeCCcEEEEEeceeEEEecCcc
Confidence 3567778888888899999999999999985 689999875 44 458887 488877654
No 123
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=98.77 E-value=1.6e-07 Score=96.95 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=42.8
Q ss_pred cchHHHHHHHHHH-HcCcEEEcccceeEEEEeCCEEEEEEe--CCe---EEEcCEEEECCCCC
Q psy2620 231 LGELPQSFARLSA-IYGGTYMLDKPVDEIVIENGKVVGVRS--GTE---IARCKQVYCDPSYV 287 (441)
Q Consensus 231 ~~~l~~~l~~~~~-~~G~~i~~~~~V~~i~~~~~~~~~v~~--~g~---~~~a~~vI~~~~~~ 287 (441)
-.....++...+. ..|.+|++++.|++|..++++++||+. +++ .+.++.||++++.+
T Consensus 192 r~s~~~~~l~~a~~r~nl~i~~~~~V~rI~~~~~ra~GV~~~~~~~~~~~~~ak~VIlaAGai 254 (532)
T TIGR01810 192 RVSAARAYLHPAMKRPNLEVQTRAFVTKINFEGNRATGVEFKKGGRKEHTEANKEVILSAGAI 254 (532)
T ss_pred EEcHHHHHhhhhccCCCeEEEeCCEEEEEEecCCeEEEEEEEeCCcEEEEEEeeeEEEccCCC
Confidence 3344555555554 457999999999999999899999985 332 35788899988874
No 124
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=98.77 E-value=9.4e-08 Score=96.15 Aligned_cols=62 Identities=18% Similarity=0.126 Sum_probs=51.5
Q ss_pred eecCCcchHHHHHHHHHHHcCcEEEcccceeEEEEe--CCEEEEEEe--CCeEEEcCEEEECCCCC
Q psy2620 226 YPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIE--NGKVVGVRS--GTEIARCKQVYCDPSYV 287 (441)
Q Consensus 226 ~~~gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~--~~~~~~v~~--~g~~~~a~~vI~~~~~~ 287 (441)
++.++...+.++|.+.++++|++|+++++|++|..+ ++++++|.. ++.++.|+.||++++-+
T Consensus 117 ~~~~~g~~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~~g~v~gv~~~~~~~~i~ak~VIlAtGG~ 182 (432)
T TIGR02485 117 FLRGGGKALTNALYSSAERLGVEIRYGIAVDRIPPEAFDGAHDGPLTTVGTHRITTQALVLAAGGL 182 (432)
T ss_pred eecCCHHHHHHHHHHHHHHcCCEEEeCCEEEEEEecCCCCeEEEEEEcCCcEEEEcCEEEEcCCCc
Confidence 445666789999999999999999999999999876 678888875 33689999999887744
No 125
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=98.76 E-value=2.4e-07 Score=94.60 Aligned_cols=57 Identities=18% Similarity=0.160 Sum_probs=46.9
Q ss_pred chHHHHHHHHHHH-cCcEEEcccceeEEEEeCCEEEEEEeC--C--eEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAI-YGGTYMLDKPVDEIVIENGKVVGVRSG--T--EIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~v~~~--g--~~~~a~~vI~~~~~~~ 288 (441)
..+.++|.+.+++ .|++++.++.|++|..++++++||... + ..+.|+.||.+++-+.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~g~v~Gv~~~~~~~~~~i~A~~VVlAtGG~~ 189 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIETGRVVGVWVWNRETVETCHADAVVLATGGAG 189 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccCCEEEEEEEEECCcEEEEEcCEEEECCCccc
Confidence 4688999988887 699999999999998888888888752 3 5789999999877553
No 126
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=98.76 E-value=5.3e-08 Score=96.38 Aligned_cols=56 Identities=16% Similarity=0.083 Sum_probs=43.8
Q ss_pred chHHHHHHHHHHH-cCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAI-YGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+.+.|.+.+.. .|++++.+++|++|..+++.+ .|.. +|++++||.||.+.+.+.
T Consensus 105 ~~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~~~~-~v~~~~g~~~~ad~vV~AdG~~S 162 (382)
T TIGR01984 105 ADLGQALLSRLALLTNIQLYCPARYKEIIRNQDYV-RVTLDNGQQLRAKLLIAADGANS 162 (382)
T ss_pred HHHHHHHHHHHHhCCCcEEEcCCeEEEEEEcCCeE-EEEECCCCEEEeeEEEEecCCCh
Confidence 4577778777777 499999999999998766654 3554 677899999999888764
No 127
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.74 E-value=2.1e-07 Score=96.88 Aligned_cols=55 Identities=15% Similarity=0.117 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeC----CEEEEEEe----CCe--EEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIEN----GKVVGVRS----GTE--IARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~----~~~~~v~~----~g~--~~~a~~vI~~~~~ 286 (441)
..+.+.|.+.+...|++++.++.|++|..++ |+++||.. +|+ .+.|+.||++++-
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 204 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGPVAAGVVAYELATGEIHVFHAKAVVFATGG 204 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCCcEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence 4688899998888999999999999998765 78998864 343 6899999987664
No 128
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.73 E-value=3.7e-07 Score=95.70 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (441)
++||||||+|.+||.||..++++|.+|+|+|++...||.
T Consensus 8 ~~DVvVIG~G~AGl~AAl~Aae~G~~V~lieK~~~~~g~ 46 (626)
T PRK07803 8 SYDVVVIGAGGAGLRAAIEARERGLRVAVVCKSLFGKAH 46 (626)
T ss_pred eecEEEECcCHHHHHHHHHHHHCCCCEEEEeccCCCCCc
Confidence 589999999999999999999999999999999876654
No 129
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.72 E-value=3.4e-07 Score=95.33 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHH-cCcEEEcccceeEEEEeCCEEEEEEe----CCe--EEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAI-YGGTYMLDKPVDEIVIENGKVVGVRS----GTE--IARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~~~~~v~~----~g~--~~~a~~vI~~~~~ 286 (441)
..+.++|.+.+.. .|++++.++.|.++..++++++||.. +|+ .+.|+.||.+++-
T Consensus 137 ~~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (577)
T PRK06069 137 FYIMHTLYSRALRFDNIHFYDEHFVTSLIVENGVFKGVTAIDLKRGEFKVFQAKAGIIATGG 198 (577)
T ss_pred HHHHHHHHHHHHhcCCCEEEECCEEEEEEEECCEEEEEEEEEcCCCeEEEEECCcEEEcCch
Confidence 4588888887766 58999999999999888899988763 343 6899999987664
No 130
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=98.71 E-value=2.1e-07 Score=92.26 Aligned_cols=35 Identities=17% Similarity=0.368 Sum_probs=33.2
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
.+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 2 ~~dV~IVGaG~aGl~~A~~L~~~G~~v~viE~~~~ 36 (390)
T TIGR02360 2 KTQVAIIGAGPSGLLLGQLLHKAGIDNVILERQSR 36 (390)
T ss_pred CceEEEECccHHHHHHHHHHHHCCCCEEEEECCCC
Confidence 48999999999999999999999999999999874
No 131
>PLN02697 lycopene epsilon cyclase
Probab=98.71 E-value=1.5e-07 Score=95.80 Aligned_cols=57 Identities=18% Similarity=0.205 Sum_probs=43.1
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEE-eCCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR-SGTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~-~~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.|.+.+...|+++ +++.|++|..+++.+..+. .+|.+++|+.||.+.+.++.
T Consensus 192 ~~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~~~~~vv~~~dG~~i~A~lVI~AdG~~S~ 249 (529)
T PLN02697 192 TLLHEELLRRCVESGVSY-LSSKVDRITEASDGLRLVACEDGRVIPCRLATVASGAASG 249 (529)
T ss_pred HHHHHHHHHHHHhcCCEE-EeeEEEEEEEcCCcEEEEEEcCCcEEECCEEEECCCcChh
Confidence 345566777777789998 7889999987656544444 46788999999999888763
No 132
>PRK08275 putative oxidoreductase; Provisional
Probab=98.71 E-value=1.9e-07 Score=96.76 Aligned_cols=55 Identities=13% Similarity=0.068 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..+.+.|.+.++..|++|+.++.|++|..+ ++++.||.. +| ..+.|+.||.+++-
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDADGRVAGALGFDCRTGEFLVIRAKAVILCCGA 198 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCCCeEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence 468889999888899999999999999886 788888863 34 35899999987654
No 133
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=98.71 E-value=8.2e-07 Score=88.04 Aligned_cols=56 Identities=20% Similarity=0.201 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CC--eEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GT--EIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~~ 288 (441)
++.++|.+.+++.|+++++++.|.++..+++++..+.. +| .+++||.||++.+.+.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~~~V~~v~~~~g~~~~i~AD~VVLAtGrf~ 318 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEGGRVTAVWTRNHGDIPLRARHFVLATGSFF 318 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCEEEEEEeeCCceEEEECCEEEEeCCCcc
Confidence 79999999999999999999999999988887777654 44 5699999998877654
No 134
>PRK07395 L-aspartate oxidase; Provisional
Probab=98.70 E-value=2.7e-07 Score=95.22 Aligned_cols=55 Identities=9% Similarity=0.038 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHc-CcEEEcccceeEEEEeC--CEEEEEEe--CCe--EEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIY-GGTYMLDKPVDEIVIEN--GKVVGVRS--GTE--IARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~--~~~~~v~~--~g~--~~~a~~vI~~~~~ 286 (441)
..+.++|.+.+++. |++|++++.|+++..++ |+++||.. +|. .+.|+.||++++-
T Consensus 134 ~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~~g~v~Gv~~~~~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 134 RAIVTTLTEQVLQRPNIEIISQALALSLWLEPETGRCQGISLLYQGQITWLRAGAVILATGG 195 (553)
T ss_pred HHHHHHHHHHHhhcCCcEEEECcChhhheecCCCCEEEEEEEEECCeEEEEEcCEEEEcCCC
Confidence 56888998888654 89999999999998763 78999874 453 4899999987664
No 135
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=98.70 E-value=2e-07 Score=97.27 Aligned_cols=56 Identities=7% Similarity=0.102 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHHcC-cEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYG-GTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~ 287 (441)
..+..+|.+.++..| ++++.++.|.++..++++++||.. ++ ..+.|+.||.+++-+
T Consensus 132 ~~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG~ 194 (608)
T PRK06854 132 ESYKPIVAEAAKKALGDNVLNRVFITDLLVDDNRIAGAVGFSVRENKFYVFKAKAVIVATGGA 194 (608)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCCEEEEEEEeCCEEEEEEEEEccCCcEEEEECCEEEECCCch
Confidence 357778877787776 999999999999888889888852 34 378999999977744
No 136
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=98.69 E-value=1.8e-07 Score=91.70 Aligned_cols=61 Identities=11% Similarity=0.106 Sum_probs=53.1
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CC--eEEEcCEEEECCCCC-cccc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GT--EIARCKQVYCDPSYV-QDRV 291 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~-~~~~ 291 (441)
-.++.++|.+.++++|++++.+++|.++..+++++++|.+ ++ .++.||+||.+++.| ...+
T Consensus 262 G~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~~~v~~V~t~~g~~~~l~AD~vVLAaGaw~S~gL 326 (419)
T TIGR03378 262 GIRLEEALKHRFEQLGGVMLPGDRVLRAEFEGNRVTRIHTRNHRDIPLRADHFVLASGSFFSNGL 326 (419)
T ss_pred HHHHHHHHHHHHHHCCCEEEECcEEEEEEeeCCeEEEEEecCCccceEECCEEEEccCCCcCHHH
Confidence 3578999999999999999999999999999998888885 43 589999999999999 6554
No 137
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=98.69 E-value=2.9e-07 Score=91.47 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHc-CcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIY-GGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
.+-+.|.+.++.. |++++.+++|+++..+++. +.|.+ +|++++||.||.+.+.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~~-~~v~~~~g~~~~a~~vI~AdG~~S 169 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDDDG-WELTLADGEEIQAKLVIGADGANS 169 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcCCe-EEEEECCCCEEEeCEEEEeCCCCc
Confidence 4455666666666 8999999999999876555 34554 667899999999888765
No 138
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.69 E-value=3.4e-07 Score=94.69 Aligned_cols=56 Identities=7% Similarity=-0.012 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCE-EEEEEe----CC--eEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGK-VVGVRS----GT--EIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~-~~~v~~----~g--~~~~a~~vI~~~~~~ 287 (441)
..+...|.+.+...|+++++++.|+++..++++ ++||.. +| ..+.|+.||.+++-+
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~~~v~Gv~~~~~~~g~~~~i~AkaVIlATGG~ 196 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDENREVIGAIFLDLRNGEIFPIYAKATILATGGA 196 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCCcEEEEEEEEECCCCcEEEEEcCcEEECCCCC
Confidence 468888888888899999999999999887654 888752 34 468999999877643
No 139
>PRK08071 L-aspartate oxidase; Provisional
Probab=98.68 E-value=3.7e-07 Score=93.51 Aligned_cols=55 Identities=18% Similarity=0.144 Sum_probs=44.4
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe---CC--eEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS---GT--EIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~---~g--~~~~a~~vI~~~~~~ 287 (441)
..+.++|.+.+. .|++++.++.|++|..+++++.||.. +| ..+.|+.||++++-+
T Consensus 130 ~~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~g~~~~i~Ak~VVlATGG~ 189 (510)
T PRK08071 130 KNLLEHLLQELV-PHVTVVEQEMVIDLIIENGRCIGVLTKDSEGKLKRYYADYVVLASGGC 189 (510)
T ss_pred HHHHHHHHHHHh-cCCEEEECeEhhheeecCCEEEEEEEEECCCcEEEEEcCeEEEecCCC
Confidence 358888888775 69999999999999888899998875 23 368999999877654
No 140
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=98.67 E-value=1.7e-07 Score=98.47 Aligned_cols=56 Identities=7% Similarity=-0.069 Sum_probs=46.1
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
-..+..+|.+.+...|++|+.++.|++|..++|++.||.. +| ..+.|+.||++++-
T Consensus 157 G~~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~g~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 157 GHTMLYAVDNEAIKLGVPVHDRKEAIALIHDGKRCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHHHHHHHHhCCCEEEeeEEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 3467788888888899999999999999988899988864 35 35789999987763
No 141
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=98.67 E-value=8e-07 Score=92.57 Aligned_cols=40 Identities=20% Similarity=0.125 Sum_probs=36.9
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
.+||||||+|.+||+||..++++|.+|+|+|+....||.+
T Consensus 3 ~~DVlVVG~G~AGl~AAi~Aa~~G~~V~lieK~~~~~g~s 42 (589)
T PRK08641 3 KGKVIVVGGGLAGLMATIKAAEAGVHVDLFSLVPVKRSHS 42 (589)
T ss_pred CccEEEECchHHHHHHHHHHHHcCCcEEEEEccCCCCCcc
Confidence 5799999999999999999999999999999999877654
No 142
>PRK07236 hypothetical protein; Provisional
Probab=98.65 E-value=4.9e-07 Score=89.64 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=33.1
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
..||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 6 ~~~ViIVGaG~aGl~~A~~L~~~G~~v~v~E~~~~ 40 (386)
T PRK07236 6 GPRAVVIGGSLGGLFAALLLRRAGWDVDVFERSPT 40 (386)
T ss_pred CCeEEEECCCHHHHHHHHHHHhCCCCEEEEecCCC
Confidence 58999999999999999999999999999999864
No 143
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=98.64 E-value=1.9e-06 Score=84.79 Aligned_cols=44 Identities=16% Similarity=0.275 Sum_probs=38.3
Q ss_pred cccEEEECCChhHHHHHhhhccC----CCeEEEEcCCCCCCCcccccC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVS----GKKVLHIDRNKYYGGESASIT 47 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~~ 47 (441)
..++=|||+|+++|+||.+|-|. |.+|.+||+.+..||...+..
T Consensus 2 ~~~AyivGsGiAsLAAAvfLIrDa~~pg~nIhIlE~~~~~GGsldg~g 49 (500)
T PF06100_consen 2 NKKAYIVGSGIASLAAAVFLIRDAKMPGENIHILEELDVPGGSLDGAG 49 (500)
T ss_pred CceEEEECCCHHHHHhhhhhhccCCCCccceEEEeCCCCCCCcccCCC
Confidence 35678999999999999999775 679999999999999986544
No 144
>PRK07512 L-aspartate oxidase; Provisional
Probab=98.62 E-value=6e-07 Score=92.07 Aligned_cols=56 Identities=11% Similarity=0.125 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHHc-CcEEEcccceeEEEEeCCEEEEEEe--CC--eEEEcCEEEECCCC
Q psy2620 231 LGELPQSFARLSAIY-GGTYMLDKPVDEIVIENGKVVGVRS--GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~~--~g--~~~~a~~vI~~~~~ 286 (441)
...+.++|.+.+... |++++.++.|++|..++++++||.. ++ ..+.|+.||++++-
T Consensus 135 G~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~g~v~Gv~~~~~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 135 GAAIMRALIAAVRATPSITVLEGAEARRLLVDDGAVAGVLAATAGGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECcChhheeecCCEEEEEEEEeCCeEEEEECCEEEEcCCC
Confidence 346889998888765 8999999999999878889999875 33 36899999987654
No 145
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=98.61 E-value=3.9e-07 Score=94.28 Aligned_cols=37 Identities=24% Similarity=0.388 Sum_probs=34.6
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
.+||+|||||++||++|..|+++|++|+|+|+++.++
T Consensus 10 ~~dV~IVGaGp~Gl~lA~~L~~~G~~v~v~Er~~~~~ 46 (538)
T PRK06183 10 DTDVVIVGAGPVGLTLANLLGQYGVRVLVLERWPTLY 46 (538)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCC
Confidence 6899999999999999999999999999999987654
No 146
>PRK08244 hypothetical protein; Provisional
Probab=98.61 E-value=3.1e-07 Score=94.10 Aligned_cols=36 Identities=31% Similarity=0.493 Sum_probs=33.6
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
++||+|||||++||++|..|+++|.+|+|+||++..
T Consensus 2 ~~dVlIVGaGpaGl~lA~~L~~~G~~v~viEr~~~~ 37 (493)
T PRK08244 2 KYEVIIIGGGPVGLMLASELALAGVKTCVIERLKET 37 (493)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCC
Confidence 489999999999999999999999999999998653
No 147
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=98.61 E-value=4e-07 Score=101.74 Aligned_cols=41 Identities=29% Similarity=0.494 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
++||||||+|.+|++||..++++|.+|+||||.+..||.+.
T Consensus 409 ~~DVvVVG~G~AGl~AAi~Aae~Ga~VivlEK~~~~GG~s~ 449 (1167)
T PTZ00306 409 PARVIVVGGGLAGCSAAIEAASCGAQVILLEKEAKLGGNSA 449 (1167)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEEccCCCCCchh
Confidence 58999999999999999999999999999999999999753
No 148
>PRK07588 hypothetical protein; Provisional
Probab=98.60 E-value=4.5e-07 Score=90.08 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=31.4
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
||+|||||++||++|..|+++|++|+|+|+.+.
T Consensus 2 ~V~IVGgG~aGl~~A~~L~~~G~~v~v~E~~~~ 34 (391)
T PRK07588 2 KVAISGAGIAGPTLAYWLRRYGHEPTLIERAPE 34 (391)
T ss_pred eEEEECccHHHHHHHHHHHHCCCceEEEeCCCC
Confidence 899999999999999999999999999999754
No 149
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=98.58 E-value=1e-06 Score=91.65 Aligned_cols=55 Identities=16% Similarity=0.146 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHc-CcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIY-GGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..|.++|.+.+... |++++.++.|+++..+++++.||.. +| ..+.|+.||.+++-
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDDGHVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeCCEEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 35778888777665 7899999999999988899988753 45 47899999987764
No 150
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=98.58 E-value=8.2e-08 Score=86.20 Aligned_cols=43 Identities=19% Similarity=0.310 Sum_probs=41.1
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 47 (441)
-+++|||+|++||+||..|+.+|++|+|+||..=+||+..|-.
T Consensus 2 ~siaIVGaGiAGl~aA~~L~~aG~~vtV~eKg~GvGGRlAtRR 44 (331)
T COG3380 2 PSIAIVGAGIAGLAAAYALREAGREVTVFEKGRGVGGRLATRR 44 (331)
T ss_pred CcEEEEccchHHHHHHHHHHhcCcEEEEEEcCCCcccchheec
Confidence 3799999999999999999999999999999999999999877
No 151
>KOG1298|consensus
Probab=98.58 E-value=1.4e-06 Score=81.94 Aligned_cols=34 Identities=29% Similarity=0.528 Sum_probs=32.1
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
..+||||||||++|.+.|+.|+|.|++|.|+||.
T Consensus 44 ~~~DvIIVGAGV~GsaLa~~L~kdGRrVhVIERD 77 (509)
T KOG1298|consen 44 GAADVIIVGAGVAGSALAYALAKDGRRVHVIERD 77 (509)
T ss_pred CcccEEEECCcchHHHHHHHHhhCCcEEEEEecc
Confidence 4689999999999999999999999999999984
No 152
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=98.58 E-value=6.2e-07 Score=92.26 Aligned_cols=37 Identities=32% Similarity=0.557 Sum_probs=34.1
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|..+||+||||+|.+|+++|..|+.+|++|+|||+..
T Consensus 4 ~~~~~D~vIVGsG~aG~~lA~rLs~~g~~VllLEaG~ 40 (542)
T COG2303 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEAGG 40 (542)
T ss_pred ccCCCCEEEECCCchhHHHHHHhcCCCCeEEEEeCCC
Confidence 4568999999999999999999999999999999963
No 153
>PLN02815 L-aspartate oxidase
Probab=98.56 E-value=9.9e-07 Score=91.55 Aligned_cols=39 Identities=18% Similarity=0.288 Sum_probs=36.3
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
++||||||+|.+||.||..++++| +|+|||+....||.+
T Consensus 29 ~~DVlVVG~G~AGl~AAl~Aae~G-~VvlleK~~~~gg~s 67 (594)
T PLN02815 29 YFDFLVIGSGIAGLRYALEVAEYG-TVAIITKDEPHESNT 67 (594)
T ss_pred ccCEEEECccHHHHHHHHHHhhCC-CEEEEECCCCCCCcH
Confidence 589999999999999999999999 899999999988754
No 154
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=98.55 E-value=2.1e-06 Score=89.23 Aligned_cols=55 Identities=13% Similarity=0.118 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHc-CcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIY-GGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..|.++|.+.+... |++++.++.|+++..+++++.||.. +| ..+.|+.||.+++-
T Consensus 132 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~g~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 132 FHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDDGRVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeCCEEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 46888888877664 7899999999999988899998863 45 57899999987653
No 155
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=98.55 E-value=1.7e-07 Score=90.82 Aligned_cols=50 Identities=20% Similarity=0.251 Sum_probs=37.2
Q ss_pred HHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCC
Q psy2620 237 SFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSY 286 (441)
Q Consensus 237 ~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~ 286 (441)
.+.+.++.+...-+....|++|..++++++||.+ +|+++.|+.||.+++.
T Consensus 100 ~~~~~l~~~~nl~i~~~~V~~l~~e~~~v~GV~~~~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 100 AMREKLESHPNLTIIQGEVTDLIVENGKVKGVVTKDGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHTSTTEEEEES-EEEEEECTTEEEEEEETTSEEEEECEEEE-TTT
T ss_pred HHHHHHhcCCCeEEEEcccceEEecCCeEEEEEeCCCCEEecCEEEEeccc
Confidence 3444455543333358899999999999999998 6899999999998876
No 156
>PRK05868 hypothetical protein; Validated
Probab=98.52 E-value=1.3e-06 Score=86.18 Aligned_cols=35 Identities=17% Similarity=0.182 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
.||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~~V~IvGgG~aGl~~A~~L~~~G~~v~viE~~~~~ 36 (372)
T PRK05868 2 KTVVVSGASVAGTAAAYWLGRHGYSVTMVERHPGL 36 (372)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCCEEEEcCCCCC
Confidence 38999999999999999999999999999998654
No 157
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=98.51 E-value=3.4e-06 Score=77.99 Aligned_cols=58 Identities=17% Similarity=0.219 Sum_probs=47.2
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-C--CeEEEcCEEEE-CCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-G--TEIARCKQVYC-DPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~--g~~~~a~~vI~-~~~~~~~ 289 (441)
-++-+.|.+..+..||.++.+.+|.+....+++++.|-+ + ...++|+.+|. +.+++.+
T Consensus 258 iRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~~~v~~i~trn~~diP~~a~~~VLAsGsffsk 319 (421)
T COG3075 258 IRLHNQLQRQFEQLGGLWMPGDEVKKATCKGGRVTEIYTRNHADIPLRADFYVLASGSFFSK 319 (421)
T ss_pred hhHHHHHHHHHHHcCceEecCCceeeeeeeCCeEEEEEecccccCCCChhHeeeeccccccc
Confidence 368899999999999999999999999999999998876 3 35688996655 4455543
No 158
>PRK09077 L-aspartate oxidase; Provisional
Probab=98.50 E-value=2.8e-06 Score=87.70 Aligned_cols=56 Identities=14% Similarity=0.106 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHc-CcEEEcccceeEEEEeC------CEEEEEEe----CC--eEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIY-GGTYMLDKPVDEIVIEN------GKVVGVRS----GT--EIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~------~~~~~v~~----~g--~~~~a~~vI~~~~~~ 287 (441)
..+...|.+.+... |++|+.++.|.++..++ ++++||.. +| ..+.|+.||.+++-+
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG~ 206 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGRRVVGAYVLNRNKERVETIRAKFVVLATGGA 206 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCCEEEEEEEEECCCCcEEEEecCeEEECCCCC
Confidence 35778888877765 89999999999998653 78999874 24 468999999877654
No 159
>KOG0042|consensus
Probab=98.49 E-value=1.2e-06 Score=85.80 Aligned_cols=69 Identities=22% Similarity=0.214 Sum_probs=51.0
Q ss_pred eeeecCC--cchHHHHHHHHHHHcCcEEEcccceeEEEE-eCCEEEEEEe----CC--eEEEcCEEEECCCCCccccc
Q psy2620 224 YLYPMYG--LGELPQSFARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRS----GT--EIARCKQVYCDPSYVQDRVK 292 (441)
Q Consensus 224 ~~~~~gG--~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~~~ 292 (441)
+.|-.|- -.++.-+++=-+..+|+.+..+.+|.++.. +++++.|++. .| -+|+|+.||.+++++.+.++
T Consensus 214 ~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~~kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsDsIr 291 (680)
T KOG0042|consen 214 MVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKDGKVIGARARDHITGKEYEIRAKVVVNATGPFSDSIR 291 (680)
T ss_pred EEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCCCceeeeEEEEeecCcEEEEEEEEEEeCCCCccHHHH
Confidence 4444443 345666666667889999999999999987 4566778764 45 45889999999999987654
No 160
>PRK06475 salicylate hydroxylase; Provisional
Probab=98.46 E-value=1.7e-06 Score=86.12 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
-+|+|||||++||++|..|+++|++|+|+|+.+..
T Consensus 3 ~~V~IvGgGiaGl~~A~~L~~~G~~V~i~E~~~~~ 37 (400)
T PRK06475 3 GSPLIAGAGVAGLSAALELAARGWAVTIIEKAQEL 37 (400)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 58999999999999999999999999999997643
No 161
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=98.45 E-value=1.5e-07 Score=95.64 Aligned_cols=57 Identities=11% Similarity=0.095 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|++++++++|+++..+++.+. +.. +|+++.+|.||.+.+..|+
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~~~~~-v~~~~g~~i~~D~vi~a~G~~p~ 273 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGDDGVI-VHLKSGKKIKADCLLYANGRTGN 273 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeCCeEE-EEECCCCEEEeCEEEEeecCCcc
Confidence 46778888888999999999999999986555433 443 6778999999998887663
No 162
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=98.45 E-value=1.6e-07 Score=94.66 Aligned_cols=44 Identities=23% Similarity=0.296 Sum_probs=40.9
Q ss_pred CCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 2 ~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
....+|+|||||++||+||.+|++.|++|+|+|+++.+||.|.-
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~vfE~~~~vGG~W~~ 51 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVVVFEREKQVGGLWVY 51 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEEEEecCCCCcceeec
Confidence 34689999999999999999999999999999999999999854
No 163
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=98.45 E-value=2.8e-07 Score=92.51 Aligned_cols=55 Identities=15% Similarity=0.223 Sum_probs=46.8
Q ss_pred CCcccEEEECCChhHHHHHhhhccCCCe-EEEEcCCCCCCCcccccCchHHHhhhhCCCCC
Q psy2620 2 DEEYDAIVLGTGLKECILSGMLSVSGKK-VLHIDRNKYYGGESASITPLEELFSKFGSTLP 61 (441)
Q Consensus 2 ~~~~DVvIIGaG~~Gl~aA~~La~~G~~-V~vlE~~~~~GG~~~t~~~~~~~~~g~~~d~p 61 (441)
++.+||+|||||.+|+++|++|.++|.. +++|||++.+||.|+... +++...+.|
T Consensus 6 ~~~~~v~IIGaG~sGlaaa~~L~~~g~~~~~i~Ek~~~~Gg~W~~~r-----y~~l~~~~p 61 (443)
T COG2072 6 ATHTDVAIIGAGQSGLAAAYALKQAGVPDFVIFEKRDDVGGTWRYNR-----YPGLRLDSP 61 (443)
T ss_pred CCcccEEEECCCHHHHHHHHHHHHcCCCcEEEEEccCCcCCcchhcc-----CCceEECCc
Confidence 4578999999999999999999999988 999999999999987654 335555554
No 164
>PRK06116 glutathione reductase; Validated
Probab=98.45 E-value=1.3e-07 Score=95.60 Aligned_cols=43 Identities=30% Similarity=0.476 Sum_probs=39.7
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
|+.+|||+|||||++|+.||..|+++|++|+++|++ .+||.+.
T Consensus 1 m~~~~DvvVIG~GpaG~~aA~~~a~~G~~V~liE~~-~~GG~c~ 43 (450)
T PRK06116 1 MTKDYDLIVIGGGSGGIASANRAAMYGAKVALIEAK-RLGGTCV 43 (450)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHHHCCCeEEEEecc-chhhhhh
Confidence 777899999999999999999999999999999995 7898763
No 165
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.45 E-value=1.5e-07 Score=95.61 Aligned_cols=44 Identities=20% Similarity=0.265 Sum_probs=41.4
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
|+.+|||||||||.+|+.||..|++.|++|+++|+++.+||.|.
T Consensus 1 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~V~lie~~~~~GG~c~ 44 (471)
T PRK06467 1 MEIKTQVVVLGAGPAGYSAAFRAADLGLETVCVERYSTLGGVCL 44 (471)
T ss_pred CCccceEEEECCCHHHHHHHHHHHHCCCcEEEEecCCccccccc
Confidence 77789999999999999999999999999999999889999763
No 166
>PRK06996 hypothetical protein; Provisional
Probab=98.44 E-value=2.5e-06 Score=84.97 Aligned_cols=53 Identities=9% Similarity=-0.003 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CC---eEEEcCEEEECCCC
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GT---EIARCKQVYCDPSY 286 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g---~~~~a~~vI~~~~~ 286 (441)
.+-+.|.+.++..|++++.+++|+++..+++.+ .+.. ++ ++++||.||.+.+.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~~v-~v~~~~~~g~~~i~a~lvIgADG~ 172 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDADGV-TLALGTPQGARTLRARIAVQAEGG 172 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCCeE-EEEECCCCcceEEeeeEEEECCCC
Confidence 566777777888899999999999997655443 3443 32 68999999988774
No 167
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=98.43 E-value=3.9e-06 Score=87.61 Aligned_cols=35 Identities=26% Similarity=0.227 Sum_probs=32.5
Q ss_pred EEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 7 AIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 7 VvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
|||||+|.+||+||..++++|.+|+|+||++.+|+
T Consensus 1 VlVVG~G~AGl~AAl~Aae~G~~VilleK~~~~~~ 35 (603)
T TIGR01811 1 VIVVGTGLAGGMAAAKLAELGYHVKLFSYVDAPRR 35 (603)
T ss_pred CEEECccHHHHHHHHHHHHcCCCEEEEEecCCCCC
Confidence 79999999999999999999999999999996654
No 168
>PRK06370 mercuric reductase; Validated
Probab=98.42 E-value=2.1e-07 Score=94.51 Aligned_cols=43 Identities=35% Similarity=0.482 Sum_probs=38.7
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
|+.+|||||||+|++|+.||.+|++.|++|+++|+. ..||.+.
T Consensus 2 ~~~~~DvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~ 44 (463)
T PRK06370 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG-LLGGTCV 44 (463)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEecC-ccCCcee
Confidence 778899999999999999999999999999999996 5666653
No 169
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=98.39 E-value=2.7e-07 Score=93.98 Aligned_cols=44 Identities=23% Similarity=0.396 Sum_probs=40.5
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
|...|||||||||++|+.||.+|++.|++|+++|++ .+||.|..
T Consensus 1 ~~~~ydvvVIG~GpaG~~aA~~aa~~G~~v~lie~~-~~GG~c~~ 44 (472)
T PRK05976 1 MAKEYDLVIIGGGPGGYVAAIRAGQLGLKTALVEKG-KLGGTCLH 44 (472)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCeEEEEEcc-CCCcceEc
Confidence 777899999999999999999999999999999996 78998743
No 170
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.39 E-value=2.4e-07 Score=94.08 Aligned_cols=43 Identities=23% Similarity=0.339 Sum_probs=39.8
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
|. +|||+|||+|++|+.||.++++.|++|+++|+++.+||.|.
T Consensus 1 m~-~~DvvVIG~GpaG~~AA~~aa~~G~~V~liE~~~~~GG~c~ 43 (466)
T PRK06115 1 MA-SYDVVIIGGGPGGYNAAIRAGQLGLKVACVEGRSTLGGTCL 43 (466)
T ss_pred CC-cccEEEECCCHHHHHHHHHHHhCCCeEEEEecCCceeeeec
Confidence 54 59999999999999999999999999999999888999873
No 171
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=98.39 E-value=7.2e-06 Score=85.28 Aligned_cols=55 Identities=9% Similarity=0.127 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeC---CEEEEEEe----CC--eEEEcCEEEECCCCC
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIEN---GKVVGVRS----GT--EIARCKQVYCDPSYV 287 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~~~~~v~~----~g--~~~~a~~vI~~~~~~ 287 (441)
.+...+.+.+...+++++.++.|+++..++ |+|+||.. +| ..+.|+.||++++-+
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~GrV~Gv~~~~~~~g~~~~i~AkaVVLATGG~ 190 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPNRIAGAVGFNVRANEVHVFKAKTVIVAAGGA 190 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCCeEEEEEEEEeCCCcEEEEECCEEEECCCcc
Confidence 444445555566678999999999999864 79999874 34 468999999987754
No 172
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.38 E-value=2.6e-07 Score=93.20 Aligned_cols=57 Identities=14% Similarity=0.155 Sum_probs=45.1
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.+++.|+++++++.|++|..+++.+ .+..++.++.+|.||.+++..|+
T Consensus 199 ~~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~~~v-~v~~~~g~i~~D~vl~a~G~~pn 255 (441)
T PRK08010 199 RDIADNIATILRDQGVDIILNAHVERISHHENQV-QVHSEHAQLAVDALLIASGRQPA 255 (441)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCEE-EEEEcCCeEEeCEEEEeecCCcC
Confidence 4677888888999999999999999998665543 34554456899999998887764
No 173
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=98.38 E-value=4.8e-06 Score=82.08 Aligned_cols=34 Identities=32% Similarity=0.388 Sum_probs=32.3
Q ss_pred cEEEECCChhHHHHHhhh--ccCCCeEEEEcCCCCC
Q psy2620 6 DAIVLGTGLKECILSGML--SVSGKKVLHIDRNKYY 39 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~L--a~~G~~V~vlE~~~~~ 39 (441)
||||||||++||++|++| ++.|++|+++|++...
T Consensus 1 DviIvGaGpAGlslA~~l~~~~~g~~Vllid~~~~~ 36 (374)
T PF05834_consen 1 DVIIVGAGPAGLSLARRLADARPGLSVLLIDPKPKP 36 (374)
T ss_pred CEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCccc
Confidence 899999999999999999 8899999999998776
No 174
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.37 E-value=3.4e-07 Score=93.05 Aligned_cols=43 Identities=28% Similarity=0.488 Sum_probs=39.0
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
|+.+|||+|||+|++|++||.+|++.|++|+++|++ .+||.+.
T Consensus 1 ~~~~~DvvIIG~GpaG~~AA~~aa~~G~~V~lie~~-~~GG~c~ 43 (466)
T PRK07818 1 MMTHYDVVVLGAGPGGYVAAIRAAQLGLKTAVVEKK-YWGGVCL 43 (466)
T ss_pred CCCcCCEEEECCCHHHHHHHHHHHhCCCeEEEEecC-CCCCcee
Confidence 667899999999999999999999999999999985 6777764
No 175
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=98.36 E-value=2.7e-07 Score=89.99 Aligned_cols=56 Identities=16% Similarity=0.063 Sum_probs=42.7
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe---CC--eEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS---GT--EIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~---~g--~~~~a~~vI~~~~~~~ 288 (441)
.+-+.|.+.++..|++++.+++|.++..+++.+..+.. +| ++++||.||.+.|...
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~~~~~~~~~~~~~g~~~~i~adlvVgADG~~S 172 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDDDGVTVVVRDGEDGEEETIEADLVVGADGAHS 172 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEETTEEEEEEEETCTCEEEEEEESEEEE-SGTT-
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccccccccccccccCCceeEEEEeeeecccCccc
Confidence 56677778888899999999999999887776554433 34 4799999999888764
No 176
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=98.35 E-value=3.3e-07 Score=91.94 Aligned_cols=40 Identities=30% Similarity=0.488 Sum_probs=34.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
||||||||++|++||..+|++|.+|+++|+.+.+||...+
T Consensus 1 DVVVvGgG~aG~~AAi~AAr~G~~VlLiE~~~~lGG~~t~ 40 (428)
T PF12831_consen 1 DVVVVGGGPAGVAAAIAAARAGAKVLLIEKGGFLGGMATS 40 (428)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTS-EEEE-SSSSSTGGGGG
T ss_pred CEEEECccHHHHHHHHHHHHCCCEEEEEECCccCCCcceE
Confidence 8999999999999999999999999999999999998754
No 177
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.34 E-value=1.2e-05 Score=87.92 Aligned_cols=35 Identities=20% Similarity=0.384 Sum_probs=33.4
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
++||||||+|.+||.||..++++|.+|+|+||...
T Consensus 13 ~~DVlVVG~G~AGl~AAl~Aa~~G~~V~lleK~~~ 47 (897)
T PRK13800 13 DCDVLVIGGGTAGTMAALTAAEHGANVLLLEKAHV 47 (897)
T ss_pred ecCEEEECcCHHHHHHHHHHHHCCCeEEEEecccc
Confidence 58999999999999999999999999999999885
No 178
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=98.34 E-value=3.9e-07 Score=91.90 Aligned_cols=57 Identities=14% Similarity=0.122 Sum_probs=43.6
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|.+++++++|++|..+++.+ .+..+|+++.+|.||.+.+..|.
T Consensus 198 ~~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~~~v-~v~~~g~~i~~D~viva~G~~p~ 254 (438)
T PRK07251 198 PSVAALAKQYMEEDGITFLLNAHTTEVKNDGDQV-LVVTEDETYRFDALLYATGRKPN 254 (438)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEecCCEE-EEEECCeEEEcCEEEEeeCCCCC
Confidence 3456666677788999999999999998655543 34557788999999998776653
No 179
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=98.34 E-value=4.2e-07 Score=92.55 Aligned_cols=45 Identities=24% Similarity=0.406 Sum_probs=40.7
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcC------CCCCCCcccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDR------NKYYGGESAS 45 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~------~~~~GG~~~t 45 (441)
|+.+||+||||+|++|++||.+|+++|++|+++|+ +..+||.|..
T Consensus 1 ~~~~~DviIIG~G~aG~~aA~~~~~~g~~v~lie~~~~~~g~~~~Gg~c~n 51 (475)
T PRK06327 1 MSKQFDVVVIGAGPGGYVAAIRAAQLGLKVACIEAWKNPKGKPALGGTCLN 51 (475)
T ss_pred CCcceeEEEECCCHHHHHHHHHHHhCCCeEEEEecccCCCCCCCcCCcccc
Confidence 77789999999999999999999999999999998 4678887754
No 180
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.33 E-value=4.4e-07 Score=94.02 Aligned_cols=43 Identities=26% Similarity=0.419 Sum_probs=39.5
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
|.+.|||+|||||++||+||.+|+++|++|+|+|++ .+||.+.
T Consensus 1 m~~~yDVvIIGgGpAGL~AA~~lar~g~~V~liE~~-~~GG~~~ 43 (555)
T TIGR03143 1 MEEIYDLIIIGGGPAGLSAGIYAGRAKLDTLIIEKD-DFGGQIT 43 (555)
T ss_pred CCCcCcEEEECCCHHHHHHHHHHHHCCCCEEEEecC-CCCceEE
Confidence 777899999999999999999999999999999995 6888764
No 181
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=98.30 E-value=5.6e-07 Score=91.41 Aligned_cols=41 Identities=34% Similarity=0.524 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.+|||||||||++|++||.+|++.|++|+++|+ +.+||.+.
T Consensus 2 ~~yDvvIIG~G~aGl~aA~~l~~~g~~v~lie~-~~~GG~~~ 42 (460)
T PRK06292 2 EKYDVIVIGAGPAGYVAARRAAKLGKKVALIEK-GPLGGTCL 42 (460)
T ss_pred CcccEEEECCCHHHHHHHHHHHHCCCeEEEEeC-Ccccccee
Confidence 469999999999999999999999999999999 78899764
No 182
>PLN02785 Protein HOTHEAD
Probab=98.29 E-value=8.2e-06 Score=84.67 Aligned_cols=35 Identities=37% Similarity=0.563 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
..||+||||+|.+|+++|..|++ +.+|+|||+...
T Consensus 54 ~~yD~IIVG~G~aG~~lA~~Ls~-~~~VLllE~G~~ 88 (587)
T PLN02785 54 SAYDYIVVGGGTAGCPLAATLSQ-NFSVLLLERGGV 88 (587)
T ss_pred ccCCEEEECcCHHHHHHHHHHhc-CCcEEEEecCCC
Confidence 36999999999999999999999 699999999764
No 183
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=98.28 E-value=6.3e-07 Score=91.04 Aligned_cols=56 Identities=16% Similarity=0.181 Sum_probs=44.7
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CC--eEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GT--EIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g--~~~~a~~vI~~~~~~~ 288 (441)
..+.+.+.+.+++.|.++++++.|++|..+++++. +.. +| +++.+|.||.+.+..|
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~~~v~-v~~~~g~~~~i~~D~vi~a~G~~p 269 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKNDDQVV-YENKGGETETLTGEKVLVAVGRKP 269 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeCCEEE-EEEeCCcEEEEEeCEEEEecCCcc
Confidence 56777888888899999999999999987666654 443 55 5899999998877655
No 184
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=98.27 E-value=6.3e-07 Score=90.52 Aligned_cols=57 Identities=12% Similarity=0.024 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
.++.+.+.+.+++.|+++++++.|++|..+++.. .|.+ +|+++.+|.||.+.+..|+
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~~-~v~~~~g~~i~~D~viva~G~~pn 264 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDDGL-KVTLSHGEEIVADVVLFATGRSPN 264 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCCeE-EEEEcCCcEeecCEEEEeeCCCcC
Confidence 4566777778888999999999999997654443 3444 6788999999998877653
No 185
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=98.27 E-value=7.1e-07 Score=90.67 Aligned_cols=43 Identities=30% Similarity=0.448 Sum_probs=39.1
Q ss_pred CCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 2 ~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
+..|||||||||++|+.||..|+++|++|+++|++. +||.+..
T Consensus 2 ~~~yDvvVIGaGpaG~~aA~~aa~~G~~V~liE~~~-~GG~c~~ 44 (462)
T PRK06416 2 AFEYDVIVIGAGPGGYVAAIRAAQLGLKVAIVEKEK-LGGTCLN 44 (462)
T ss_pred CccccEEEECCCHHHHHHHHHHHHCCCcEEEEeccc-cccceee
Confidence 457999999999999999999999999999999987 8997643
No 186
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=98.26 E-value=1.1e-05 Score=82.60 Aligned_cols=55 Identities=15% Similarity=0.166 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHc-CcEEEcccceeEEEEe-CCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIY-GGTYMLDKPVDEIVIE-NGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~-~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
.+.++|.+.++.. |.++ ....|..+..+ ++++.+|.+ +|..+.|+.||.+++.|.
T Consensus 97 ~y~~~L~e~Le~~pgV~I-le~~Vv~li~e~~g~V~GV~t~~G~~I~Ad~VILATGtfL 154 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSL-FQGEVEDLILEDNDEIKGVVTQDGLKFRAKAVIITTGTFL 154 (617)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEEecCCcEEEEEECCCCEEECCEEEEccCccc
Confidence 4455566666766 4555 56678888765 778899987 567899999999988873
No 187
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=98.26 E-value=7.1e-07 Score=90.16 Aligned_cols=58 Identities=3% Similarity=-0.107 Sum_probs=43.9
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CC-eEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GT-EIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g-~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|.++++++.|++|..+++....|.. +| +++.+|.||.+.+..|+
T Consensus 207 ~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~~~~~v~~~~g~~~i~~D~vi~a~G~~pn 266 (450)
T TIGR01421 207 SMISETITEEYEKEGINVHKLSKPVKVEKTVEGKLVIHFEDGKSIDDVDELIWAIGRKPN 266 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCCceEEEEECCCcEEEEcCEEEEeeCCCcC
Confidence 456777778888899999999999999764333234444 56 67999999998877654
No 188
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=98.25 E-value=2e-05 Score=76.30 Aligned_cols=56 Identities=23% Similarity=0.357 Sum_probs=49.8
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCC
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSY 286 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~ 286 (441)
.-.+...+.+.++.+|++|+.++.|..|..+++.+.+|.+ +|+++.+|+||.+++.
T Consensus 172 l~~vvkni~~~l~~~G~ei~f~t~VeDi~~~~~~~~~v~~~~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 172 LPKVVKNIREYLESLGGEIRFNTEVEDIEIEDNEVLGVKLTKGEEIEADYVVLAPGR 228 (486)
T ss_pred hHHHHHHHHHHHHhcCcEEEeeeEEEEEEecCCceEEEEccCCcEEecCEEEEccCc
Confidence 4567888899999999999999999999998887888886 6789999999998875
No 189
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=5.9e-07 Score=85.12 Aligned_cols=44 Identities=25% Similarity=0.301 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 46 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 46 (441)
+.|||+|||||++||+||.|++|+|+++.+++....+||.....
T Consensus 2 ~~~DviIIG~GPAGl~AAiya~r~~l~~~li~~~~~~gg~~~~~ 45 (305)
T COG0492 2 KIYDVIIIGGGPAGLTAAIYAARAGLKVVLILEGGEPGGQLTKT 45 (305)
T ss_pred ceeeEEEECCCHHHHHHHHHHHHcCCCcEEEEecCCcCCccccc
Confidence 46999999999999999999999999955555557777765433
No 190
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=98.25 E-value=7.4e-07 Score=89.68 Aligned_cols=35 Identities=20% Similarity=0.316 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.+|||+|||||++|++||..|+++|++|+++|++.
T Consensus 38 ~~~DViIVGaGPAG~~aA~~LA~~G~~VlllEr~~ 72 (450)
T PLN00093 38 RKLRVAVIGGGPAGACAAETLAKGGIETFLIERKL 72 (450)
T ss_pred CCCeEEEECCCHHHHHHHHHHHhCCCcEEEEecCC
Confidence 35999999999999999999999999999999974
No 191
>KOG2665|consensus
Probab=98.24 E-value=2e-06 Score=78.91 Aligned_cols=45 Identities=24% Similarity=0.351 Sum_probs=39.0
Q ss_pred CcccEEEECCChhHHHHHhhhccC--CCeEEEEcCCCCCCCcccccC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVS--GKKVLHIDRNKYYGGESASIT 47 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~t~~ 47 (441)
+.||.||||||+.||+.|..|.-+ +++|.|||+....+-..++.+
T Consensus 47 ~~~D~VvvGgGiVGlAsARel~lrhp~l~V~vleke~~la~hqSghN 93 (453)
T KOG2665|consen 47 ERYDLVVVGGGIVGLASARELSLRHPSLKVAVLEKEKSLAVHQSGHN 93 (453)
T ss_pred ccccEEEECCceeehhhhHHHhhcCCCceEEeeehhhhhceeecccc
Confidence 469999999999999999999866 899999999988776665555
No 192
>PRK07045 putative monooxygenase; Reviewed
Probab=98.24 E-value=8.4e-07 Score=88.04 Aligned_cols=37 Identities=22% Similarity=0.427 Sum_probs=34.7
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
..+||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 4 ~~~~V~IiGgGpaGl~~A~~L~~~G~~v~v~E~~~~~ 40 (388)
T PRK07045 4 NPVDVLINGSGIAGVALAHLLGARGHSVTVVERAARN 40 (388)
T ss_pred ceeEEEEECCcHHHHHHHHHHHhcCCcEEEEeCCCcc
Confidence 6789999999999999999999999999999998754
No 193
>KOG2404|consensus
Probab=98.24 E-value=1.5e-05 Score=73.56 Aligned_cols=40 Identities=25% Similarity=0.360 Sum_probs=36.9
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..|||||+|++||+|+-.+-..|-.|++||++...||...
T Consensus 10 spvvVIGgGLAGLsasn~iin~gg~V~llek~~s~GGNSi 49 (477)
T KOG2404|consen 10 SPVVVIGGGLAGLSASNDIINKGGIVILLEKAGSIGGNSI 49 (477)
T ss_pred CcEEEECCchhhhhhHHHHHhcCCeEEEEeccCCcCCcce
Confidence 3699999999999999999999888999999999999874
No 194
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=98.24 E-value=8.7e-07 Score=87.77 Aligned_cols=36 Identities=25% Similarity=0.430 Sum_probs=33.5
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|. ++||+|||||++||++|..|+++|++|+|+|+.+
T Consensus 1 ~~-~~dv~IvGgG~aGl~~A~~L~~~G~~v~l~E~~~ 36 (384)
T PRK08849 1 MN-KYDIAVVGGGMVGAATALGFAKQGRSVAVIEGGE 36 (384)
T ss_pred CC-cccEEEECcCHHHHHHHHHHHhCCCcEEEEcCCC
Confidence 55 5899999999999999999999999999999875
No 195
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=98.23 E-value=8.8e-07 Score=87.87 Aligned_cols=32 Identities=25% Similarity=0.482 Sum_probs=31.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
|||||||||++|++||..|+++|++|+|+|++
T Consensus 1 yDVvIVGaGpAG~~aA~~La~~G~~V~l~E~~ 32 (388)
T TIGR02023 1 YDVAVIGGGPSGATAAETLARAGIETILLERA 32 (388)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECC
Confidence 79999999999999999999999999999997
No 196
>PLN02661 Putative thiazole synthesis
Probab=98.22 E-value=9.8e-07 Score=84.29 Aligned_cols=40 Identities=25% Similarity=0.315 Sum_probs=36.8
Q ss_pred cccEEEECCChhHHHHHhhhccC-CCeEEEEcCCCCCCCcc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVS-GKKVLHIDRNKYYGGES 43 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~GG~~ 43 (441)
++||+|||+|++|++||++|+++ |++|+++|++..+||..
T Consensus 92 ~~DVlIVGaG~AGl~AA~~La~~~g~kV~viEk~~~~GGG~ 132 (357)
T PLN02661 92 DTDVVIVGAGSAGLSCAYELSKNPNVKVAIIEQSVSPGGGA 132 (357)
T ss_pred cCCEEEECCHHHHHHHHHHHHHcCCCeEEEEecCcccccce
Confidence 58999999999999999999976 89999999999998754
No 197
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=98.22 E-value=7.8e-07 Score=79.69 Aligned_cols=39 Identities=23% Similarity=0.345 Sum_probs=32.8
Q ss_pred EEECCChhHHHHHhhhccCCCe-EEEEcCCCCCCCccccc
Q psy2620 8 IVLGTGLKECILSGMLSVSGKK-VLHIDRNKYYGGESASI 46 (441)
Q Consensus 8 vIIGaG~~Gl~aA~~La~~G~~-V~vlE~~~~~GG~~~t~ 46 (441)
+|||||++||++|++|.+.|.+ |+|||+++.+||.+...
T Consensus 1 ~IIGaG~aGl~~a~~l~~~g~~~v~v~e~~~~~Gg~w~~~ 40 (203)
T PF13738_consen 1 VIIGAGPAGLAAAAHLLERGIDPVVVLERNDRPGGVWRRY 40 (203)
T ss_dssp EEE--SHHHHHHHHHHHHTT---EEEEESSSSSTTHHHCH
T ss_pred CEECcCHHHHHHHHHHHhCCCCcEEEEeCCCCCCCeeEEe
Confidence 6999999999999999999999 99999999999998743
No 198
>PTZ00052 thioredoxin reductase; Provisional
Probab=98.20 E-value=1.3e-06 Score=89.39 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=44.0
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|.++++++.|+++...++.+ .+.. +|+++.+|.||.+.+..|+
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~~~~-~v~~~~g~~i~~D~vl~a~G~~pn 279 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMDDKI-KVLFSDGTTELFDTVLYATGRKPD 279 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcCCeE-EEEECCCCEEEcCEEEEeeCCCCC
Confidence 3466778888889999999999999997654443 3444 6788999999998876653
No 199
>KOG1399|consensus
Probab=98.19 E-value=1.2e-06 Score=87.00 Aligned_cols=44 Identities=23% Similarity=0.252 Sum_probs=41.0
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASI 46 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~ 46 (441)
..-+|+|||||.+||++|..|.+.|++|+|+||.+.+||.|.--
T Consensus 5 ~~~~vaIIGAG~sGL~~ar~l~~~g~~v~vfEr~~~iGGlW~y~ 48 (448)
T KOG1399|consen 5 MSKDVAVIGAGPAGLAAARELLREGHEVVVFERTDDIGGLWKYT 48 (448)
T ss_pred CCCceEEECcchHHHHHHHHHHHCCCCceEEEecCCccceEeec
Confidence 35799999999999999999999999999999999999999654
No 200
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=98.19 E-value=1.4e-06 Score=86.93 Aligned_cols=45 Identities=27% Similarity=0.446 Sum_probs=41.9
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
|+.+||+||||+|.+|.+||.++++.|++|+++|+...+||.|..
T Consensus 1 ~~~~yDvvVIG~GpaG~~aA~raa~~G~kvalvE~~~~lGGtCln 45 (454)
T COG1249 1 MMKEYDVVVIGAGPAGYVAAIRAAQLGLKVALVEKGERLGGTCLN 45 (454)
T ss_pred CCccccEEEECCCHHHHHHHHHHHhCCCCEEEEeecCCcCceEEe
Confidence 677899999999999999999999999999999999899998843
No 201
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=98.18 E-value=1.4e-06 Score=86.63 Aligned_cols=36 Identities=17% Similarity=0.261 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
+||+|||||++|++||..|+++|++|+|+|++...+
T Consensus 1 ~~VvIVGaGPAG~~aA~~la~~G~~V~llE~~~~~~ 36 (398)
T TIGR02028 1 LRVAVVGGGPAGASAAETLASAGIQTFLLERKPDNA 36 (398)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCcEEEEecCCCCC
Confidence 599999999999999999999999999999986544
No 202
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=98.18 E-value=1.3e-06 Score=83.16 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=36.4
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
|||+|||||++||+||..|++.|++|+++|+++ +||.+..
T Consensus 1 ~dvvIIG~G~aGl~aA~~l~~~g~~v~lie~~~-~gg~~~~ 40 (300)
T TIGR01292 1 YDVIIIGAGPAGLTAAIYAARANLKTLIIEGME-PGGQLTT 40 (300)
T ss_pred CcEEEECCCHHHHHHHHHHHHCCCCEEEEeccC-CCcceee
Confidence 799999999999999999999999999999987 7776643
No 203
>KOG2852|consensus
Probab=98.18 E-value=0.00012 Score=66.76 Aligned_cols=44 Identities=14% Similarity=0.235 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHhhhccCC------CeEEEEcCCCCCCCccccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSG------KKVLHIDRNKYYGGESASI 46 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G------~~V~vlE~~~~~GG~~~t~ 46 (441)
+...++|||||+.|..+|++|++.+ ..|+++|+....||...-.
T Consensus 9 nsk~I~IvGGGIiGvctayyLt~~~sf~~~~~~ItifEs~~IA~gaSGka 58 (380)
T KOG2852|consen 9 NSKKIVIVGGGIIGVCTAYYLTEHPSFKKGELDITIFESKEIAGGASGKA 58 (380)
T ss_pred CceEEEEECCCceeeeeehhhhcCCccCCCceeEEEEeeccccccccccc
Confidence 4468999999999999999999998 8999999999999887543
No 204
>PRK13748 putative mercuric reductase; Provisional
Probab=98.17 E-value=1.4e-06 Score=90.71 Aligned_cols=57 Identities=7% Similarity=0.107 Sum_probs=45.0
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|.++++++.|++|..+++.+ .+.++++++.+|.||.+++..|+
T Consensus 310 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~~~-~v~~~~~~i~~D~vi~a~G~~pn 366 (561)
T PRK13748 310 PAIGEAVTAAFRAEGIEVLEHTQASQVAHVDGEF-VLTTGHGELRADKLLVATGRAPN 366 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecCCEE-EEEecCCeEEeCEEEEccCCCcC
Confidence 4677788888889999999999999998665543 35555557999999998887664
No 205
>PRK14694 putative mercuric reductase; Provisional
Probab=98.15 E-value=1.8e-06 Score=87.83 Aligned_cols=57 Identities=7% Similarity=0.053 Sum_probs=45.5
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.+++.|.++++++.|++|..+++. +.+.+++.++.+|.||.+++..|+
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~~~-~~v~~~~~~i~~D~vi~a~G~~pn 274 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNGRE-FILETNAGTLRAEQLLVATGRTPN 274 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCCE-EEEEECCCEEEeCEEEEccCCCCC
Confidence 467788888889999999999999999765554 345556667999999998887663
No 206
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=98.13 E-value=2e-06 Score=87.41 Aligned_cols=39 Identities=23% Similarity=0.450 Sum_probs=35.9
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
|||||||||++|++||.+|++.|++|+++|+.. +||.|.
T Consensus 1 yDvvVIGaGpaG~~aA~~aa~~g~~v~lie~~~-~GG~c~ 39 (463)
T TIGR02053 1 YDLVIIGSGAAAFAAAIKAAELGASVAMVERGP-LGGTCV 39 (463)
T ss_pred CCEEEECCCHHHHHHHHHHHHCCCeEEEEeCCc-ccCCee
Confidence 799999999999999999999999999999976 777753
No 207
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.13 E-value=2.1e-06 Score=85.38 Aligned_cols=35 Identities=29% Similarity=0.350 Sum_probs=32.6
Q ss_pred CcccEEEECCChhHHHHHhhhccC---CCeEEEEcCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVS---GKKVLHIDRNK 37 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~---G~~V~vlE~~~ 37 (441)
..+||+|||||++|+++|+.|+++ |++|+|+|+..
T Consensus 2 ~~~dv~IvGaG~aGl~~A~~L~~~~~~G~~v~v~E~~~ 39 (395)
T PRK05732 2 SRMDVIIVGGGMAGATLALALSRLSHGGLPVALIEAFA 39 (395)
T ss_pred CcCCEEEECcCHHHHHHHHHhhhcccCCCEEEEEeCCC
Confidence 469999999999999999999998 99999999963
No 208
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=98.12 E-value=2.2e-06 Score=92.71 Aligned_cols=41 Identities=20% Similarity=0.259 Sum_probs=38.9
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.++|+|||||++||+||++|++.|++|+|+|+++.+||..+
T Consensus 537 ~kkVaIIGGGPAGLSAA~~LAr~G~~VTV~Ek~~~lGG~l~ 577 (1012)
T TIGR03315 537 AHKVAVIGAGPAGLSAGYFLARAGHPVTVFEKKEKPGGVVK 577 (1012)
T ss_pred CCcEEEECCCHHHHHHHHHHHHCCCeEEEEecccccCceee
Confidence 47999999999999999999999999999999999999874
No 209
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=98.11 E-value=2.5e-06 Score=84.68 Aligned_cols=37 Identities=24% Similarity=0.288 Sum_probs=34.3
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCc
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (441)
||||||||++|+++|+.|+++|++|+|+|+++..|+.
T Consensus 1 DviIiGaG~AGl~~A~~la~~g~~v~liE~~~~~~~~ 37 (388)
T TIGR01790 1 DLAVIGGGPAGLAIALELARPGLRVQLIEPHPPIPGN 37 (388)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCCC
Confidence 8999999999999999999999999999998776653
No 210
>PTZ00058 glutathione reductase; Provisional
Probab=98.09 E-value=2.8e-06 Score=87.58 Aligned_cols=42 Identities=26% Similarity=0.435 Sum_probs=38.0
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
.+|||||||||.+|..||..+++.|++|+++|++ .+||.|..
T Consensus 47 ~~yDvvVIG~G~aG~~aA~~aa~~G~~ValIEk~-~~GGtCln 88 (561)
T PTZ00058 47 MVYDLIVIGGGSGGMAAARRAARNKAKVALVEKD-YLGGTCVN 88 (561)
T ss_pred ccccEEEECcCHHHHHHHHHHHHcCCeEEEEecc-cccccccc
Confidence 3699999999999999999999999999999996 78997743
No 211
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=98.08 E-value=0.0003 Score=68.90 Aligned_cols=62 Identities=18% Similarity=0.146 Sum_probs=48.2
Q ss_pred eeecCC----cchHHHHHHHHHHHc-CcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 225 LYPMYG----LGELPQSFARLSAIY-GGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 225 ~~~~gG----~~~l~~~l~~~~~~~-G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
.+...| .|+|++.|.+.+... |.+++++++|+.|...++..+.|.. +| .+++|+.|++.++-
T Consensus 170 t~~~~GTDVnFG~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~dg~W~v~~~~~~~~~~~~v~a~FVfvGAGG 242 (488)
T PF06039_consen 170 TRVEEGTDVNFGALTRQLVEYLQKQKGFELHLNHEVTDIKRNGDGRWEVKVKDLKTGEKREVRAKFVFVGAGG 242 (488)
T ss_pred eecCCCccccHHHHHHHHHHHHHhCCCcEEEecCEeCeeEECCCCCEEEEEEecCCCCeEEEECCEEEECCch
Confidence 444555 789999999999887 9999999999999985444344442 23 78999999987764
No 212
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=98.08 E-value=2.8e-06 Score=92.59 Aligned_cols=41 Identities=24% Similarity=0.246 Sum_probs=38.8
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||||++||+||.+|+++|++|+|+|+++.+||..+
T Consensus 306 gkkVaVIGsGPAGLsaA~~Lar~G~~VtVfE~~~~~GG~l~ 346 (944)
T PRK12779 306 KPPIAVVGSGPSGLINAYLLAVEGFPVTVFEAFHDLGGVLR 346 (944)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEeeCCCCCceEE
Confidence 47899999999999999999999999999999999999864
No 213
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=98.08 E-value=2.8e-06 Score=83.85 Aligned_cols=56 Identities=7% Similarity=0.043 Sum_probs=41.4
Q ss_pred chHHHHHHHHHHHcC-cEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYG-GTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G-~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~ 288 (441)
..|-+.|.+.+...+ .+++.+++|++|..+++.+ .|..++.+++||.||.+.|...
T Consensus 104 ~~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~~v-~v~~~~~~~~adlvIgADG~~S 160 (374)
T PRK06617 104 SDFKKILLSKITNNPLITLIDNNQYQEVISHNDYS-IIKFDDKQIKCNLLIICDGANS 160 (374)
T ss_pred HHHHHHHHHHHhcCCCcEEECCCeEEEEEEcCCeE-EEEEcCCEEeeCEEEEeCCCCc
Confidence 356666777677665 7899999999998766654 3565555899999998877653
No 214
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=98.06 E-value=3.4e-06 Score=85.06 Aligned_cols=34 Identities=26% Similarity=0.399 Sum_probs=31.8
Q ss_pred ccEEEECCChhHHHHHhhhcc----CCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSV----SGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~----~G~~V~vlE~~~~ 38 (441)
|||+|||||++|+++|+.|++ +|++|+|+|+++.
T Consensus 1 ~DV~IVGaGp~Gl~~A~~La~~~~~~G~~v~viE~~~~ 38 (437)
T TIGR01989 1 FDVVIVGGGPVGLALAAALGNNPLTKDLKVLLLDAVDN 38 (437)
T ss_pred CcEEEECCcHHHHHHHHHHhcCcccCCCeEEEEeCCCC
Confidence 799999999999999999999 8999999999653
No 215
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=98.06 E-value=4e-06 Score=77.57 Aligned_cols=41 Identities=34% Similarity=0.569 Sum_probs=36.0
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC--CCCCcc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK--YYGGES 43 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~--~~GG~~ 43 (441)
.++||||||+|++||+||+.||.+|++|+++|+.. .+||.+
T Consensus 4 ~~~dvivvgaglaglvaa~elA~aG~~V~ildQEgeqnlGGQA 46 (552)
T COG3573 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQEGEQNLGGQA 46 (552)
T ss_pred ccccEEEECccHHHHHHHHHHHhcCceEEEEccccccccccee
Confidence 36899999999999999999999999999999874 366653
No 216
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=98.05 E-value=2.8e-05 Score=78.45 Aligned_cols=54 Identities=15% Similarity=0.183 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEE-eCCEEEEEEe-CCeEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRS-GTEIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~-~~~~~~~v~~-~g~~~~a~~vI~~~~~ 286 (441)
..+-+.|.+.+.+.|++++.++ |..+.. ++|.+++|++ +|++++||.||=+.|.
T Consensus 154 ~~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~g~i~~v~~~~g~~i~ad~~IDASG~ 209 (454)
T PF04820_consen 154 AKFDQFLRRHAEERGVEVIEGT-VVDVELDEDGRITAVRLDDGRTIEADFFIDASGR 209 (454)
T ss_dssp HHHHHHHHHHHHHTT-EEEET--EEEEEE-TTSEEEEEEETTSEEEEESEEEE-SGG
T ss_pred HHHHHHHHHHHhcCCCEEEeCE-EEEEEEcCCCCEEEEEECCCCEEEEeEEEECCCc
Confidence 5677788888999999998775 777766 4778889987 6799999999976654
No 217
>COG1148 HdrA Heterodisulfide reductase, subunit A and related polyferredoxins [Energy production and conversion]
Probab=98.05 E-value=3.1e-06 Score=82.03 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=40.1
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccccC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t~~ 47 (441)
-+++|||||++|++||..||+.|++|.++|+++.+||+...++
T Consensus 125 ~svLVIGGGvAGitAAl~La~~G~~v~LVEKepsiGGrmak~~ 167 (622)
T COG1148 125 KSVLVIGGGVAGITAALELADMGFKVYLVEKEPSIGGRMAKLN 167 (622)
T ss_pred cceEEEcCcHHHHHHHHHHHHcCCeEEEEecCCcccccHHhhh
Confidence 4799999999999999999999999999999999999986654
No 218
>KOG2853|consensus
Probab=98.05 E-value=5.7e-05 Score=70.30 Aligned_cols=41 Identities=22% Similarity=0.328 Sum_probs=34.5
Q ss_pred CcccEEEECCChhHHHHHhhhcc----CCCeEEEEcCCCCCCCcc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSV----SGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~----~G~~V~vlE~~~~~GG~~ 43 (441)
..+||+|||||..|+++|+-|.+ .|.+|+|+|+++.|--.+
T Consensus 85 ~~~dVvIIGGG~~GsS~AfWLKer~rd~gl~VvVVErddtytqss 129 (509)
T KOG2853|consen 85 YHCDVVIIGGGGSGSSTAFWLKERARDEGLNVVVVERDDTYTQSS 129 (509)
T ss_pred cccCEEEECCCccchhhHHHHHHHhhcCCceEEEEeccCcccccc
Confidence 46899999999999999998853 479999999999874433
No 219
>PRK12831 putative oxidoreductase; Provisional
Probab=98.05 E-value=4e-06 Score=84.88 Aligned_cols=42 Identities=21% Similarity=0.222 Sum_probs=39.1
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
...||+|||||++||+||.+|++.|++|+|+|+++.+||.+.
T Consensus 139 ~~~~V~IIG~GpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 180 (464)
T PRK12831 139 KGKKVAVIGSGPAGLTCAGDLAKMGYDVTIFEALHEPGGVLV 180 (464)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCeEEEEecCCCCCCeee
Confidence 357999999999999999999999999999999999999874
No 220
>PLN02463 lycopene beta cyclase
Probab=98.04 E-value=3.6e-06 Score=84.45 Aligned_cols=54 Identities=15% Similarity=0.137 Sum_probs=40.0
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
.+-+.|.+.+...|++++ ...|++|..+++. +.|.+ +|.+++|+.||.+.|..+
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~~~-~~V~~~dG~~i~A~lVI~AdG~~s 169 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEESK-SLVVCDDGVKIQASLVLDATGFSR 169 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcCCe-EEEEECCCCEEEcCEEEECcCCCc
Confidence 445566666777899986 6799999876665 45665 677899999999887643
No 221
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=98.04 E-value=4e-06 Score=86.90 Aligned_cols=56 Identities=20% Similarity=0.343 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe--CC--eEEEcC-EEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS--GT--EIARCK-QVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~--~g--~~~~a~-~vI~~~~~~ 287 (441)
..+...|.+.+++.|++++++++|++|..++++|+||.. ++ ..++|+ .||++++-+
T Consensus 208 ~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~g~v~Gv~~~~~g~~~~i~A~~~VIlAtGG~ 268 (557)
T PRK07843 208 QALAAGLRIGLQRAGVPVLLNTPLTDLYVEDGRVTGVHAAESGEPQLIRARRGVILASGGF 268 (557)
T ss_pred HHHHHHHHHHHHcCCCEEEeCCEEEEEEEeCCEEEEEEEEeCCcEEEEEeceeEEEccCCc
Confidence 457888888888999999999999999988899999875 45 458897 588765543
No 222
>PRK14727 putative mercuric reductase; Provisional
Probab=98.04 E-value=3.6e-06 Score=85.83 Aligned_cols=42 Identities=17% Similarity=0.271 Sum_probs=39.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
.|||||||+|.+|+.+|..|++.|++|+++|+++.+||.|..
T Consensus 16 ~~dvvvIG~G~aG~~~a~~~~~~g~~v~~ie~~~~~GG~c~n 57 (479)
T PRK14727 16 QLHVAIIGSGSAAFAAAIKAAEHGARVTIIEGADVIGGCCVN 57 (479)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEEccCcceeEecc
Confidence 599999999999999999999999999999999899999854
No 223
>PRK06126 hypothetical protein; Provisional
Probab=98.03 E-value=3.8e-06 Score=87.19 Aligned_cols=36 Identities=19% Similarity=0.252 Sum_probs=33.4
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
..+||+|||||++||++|..|+++|++|+|+|+++.
T Consensus 6 ~~~~VlIVGaGpaGL~~Al~La~~G~~v~viEr~~~ 41 (545)
T PRK06126 6 SETPVLIVGGGPVGLALALDLGRRGVDSILVERKDG 41 (545)
T ss_pred ccCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCC
Confidence 358999999999999999999999999999999763
No 224
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=98.03 E-value=4.6e-06 Score=86.54 Aligned_cols=37 Identities=22% Similarity=0.268 Sum_probs=34.4
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
.++||+|||||++||++|..|++.|.+|+|+|+++.+
T Consensus 22 ~~~dVlIVGaGpaGl~lA~~L~~~G~~v~viE~~~~~ 58 (547)
T PRK08132 22 ARHPVVVVGAGPVGLALAIDLAQQGVPVVLLDDDDTL 58 (547)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEeCCCCC
Confidence 4589999999999999999999999999999998754
No 225
>PRK11445 putative oxidoreductase; Provisional
Probab=98.02 E-value=4.3e-06 Score=81.76 Aligned_cols=34 Identities=29% Similarity=0.511 Sum_probs=32.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
|||+|||||++|+++|..|+++ ++|+|+|+++..
T Consensus 2 ~dV~IvGaGpaGl~~A~~La~~-~~V~liE~~~~~ 35 (351)
T PRK11445 2 YDVAIIGLGPAGSALARLLAGK-MKVIAIDKKHQC 35 (351)
T ss_pred ceEEEECCCHHHHHHHHHHhcc-CCEEEEECCCcc
Confidence 8999999999999999999999 999999998754
No 226
>PTZ00367 squalene epoxidase; Provisional
Probab=98.02 E-value=4.3e-06 Score=86.19 Aligned_cols=35 Identities=34% Similarity=0.628 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.++||||||||++|+++|..|+++|++|+|+||+.
T Consensus 32 ~~~dViIVGaGiaGlalA~aLar~G~~V~VlEr~~ 66 (567)
T PTZ00367 32 YDYDVIIVGGSIAGPVLAKALSKQGRKVLMLERDL 66 (567)
T ss_pred cCccEEEECCCHHHHHHHHHHHhcCCEEEEEcccc
Confidence 35899999999999999999999999999999975
No 227
>PRK06753 hypothetical protein; Provisional
Probab=98.01 E-value=4.1e-06 Score=82.60 Aligned_cols=34 Identities=18% Similarity=0.386 Sum_probs=32.5
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
||+|||||++||++|..|+++|++|+|+|+++..
T Consensus 2 ~V~IvGgG~aGl~~A~~L~~~g~~v~v~E~~~~~ 35 (373)
T PRK06753 2 KIAIIGAGIGGLTAAALLQEQGHEVKVFEKNESV 35 (373)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEecCCcc
Confidence 7999999999999999999999999999998865
No 228
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=98.01 E-value=5e-06 Score=87.32 Aligned_cols=38 Identities=21% Similarity=0.340 Sum_probs=34.6
Q ss_pred CCCcccEEEECCChhHHHHHhhhcc-CCCeEEEEcCCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSV-SGKKVLHIDRNKY 38 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~-~G~~V~vlE~~~~ 38 (441)
|.+++||+|||||++||++|+.|++ +|.+|+|+|+++.
T Consensus 29 ~~~~~dVlIVGAGPaGL~lA~~Lar~~Gi~v~IiE~~~~ 67 (634)
T PRK08294 29 LPDEVDVLIVGCGPAGLTLAAQLSAFPDITTRIVERKPG 67 (634)
T ss_pred CCCCCCEEEECCCHHHHHHHHHHhcCCCCcEEEEEcCCC
Confidence 5568999999999999999999999 5999999999753
No 229
>PLN02507 glutathione reductase
Probab=98.01 E-value=5e-06 Score=85.04 Aligned_cols=57 Identities=14% Similarity=0.060 Sum_probs=44.1
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
.++.+.+.+.++..|.++++++.|+++..+++.+ .+.. +|+++.+|.||.+++..|+
T Consensus 244 ~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~~~~-~v~~~~g~~i~~D~vl~a~G~~pn 301 (499)
T PLN02507 244 DEMRAVVARNLEGRGINLHPRTNLTQLTKTEGGI-KVITDHGEEFVADVVLFATGRAPN 301 (499)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEeCCeE-EEEECCCcEEEcCEEEEeecCCCC
Confidence 4566777777888999999999999998655553 3444 5778999999998776553
No 230
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=98.00 E-value=5.4e-06 Score=84.33 Aligned_cols=58 Identities=10% Similarity=0.063 Sum_probs=45.2
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|.++++++.|++|..+++....|.+ +|+++.+|.||.+++..|+
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~~~~~v~~~~g~~i~~D~vl~a~G~~Pn 289 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNADGSKHVTFESGKTLDVDVVMMAIGRVPR 289 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCCceEEEEEcCCCEEEcCEEEEeeCCCcC
Confidence 567788888889999999999999999764333344554 6778999999998776553
No 231
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=97.99 E-value=6.3e-05 Score=74.42 Aligned_cols=66 Identities=11% Similarity=0.122 Sum_probs=53.4
Q ss_pred eeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcccc
Q psy2620 224 YLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 224 ~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~~~ 291 (441)
..+|.+| ...++++|.+.+.+ |++++.+++|++|..++++ +.|++ +|..+.||+||.+++.|...+
T Consensus 124 l~~~~~g~idp~~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~~~-~~v~t~~g~~~~a~~vV~a~G~~~~~l 193 (381)
T TIGR03197 124 LFFPQGGWLSPPQLCRALLAHAGI-RLTLHFNTEITSLERDGEG-WQLLDANGEVIAASVVVLANGAQAGQL 193 (381)
T ss_pred eEeCCCcccChHHHHHHHHhccCC-CcEEEeCCEEEEEEEcCCe-EEEEeCCCCEEEcCEEEEcCCcccccc
Confidence 4555556 57899999999988 9999999999999877666 55766 566699999999999986543
No 232
>PRK09897 hypothetical protein; Provisional
Probab=97.98 E-value=0.00014 Score=74.30 Aligned_cols=55 Identities=9% Similarity=-0.052 Sum_probs=40.0
Q ss_pred chHHHHHHHHHHHcC--cEEEcccceeEEEEeCCEEEEEEe-C-CeEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYG--GTYMLDKPVDEIVIENGKVVGVRS-G-TEIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G--~~i~~~~~V~~i~~~~~~~~~v~~-~-g~~~~a~~vI~~~~~~ 287 (441)
....+.+.+.+...| +.++.+++|+.|..+++.+ .|.+ + |..+.||+||.+.|..
T Consensus 107 ~~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~~g~-~V~t~~gg~~i~aD~VVLAtGh~ 165 (534)
T PRK09897 107 RDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGV-MLATNQDLPSETFDLAVIATGHV 165 (534)
T ss_pred HHHHHHHHHHHHHcCCeEEEEECCEEEEEEEeCCEE-EEEECCCCeEEEcCEEEECCCCC
Confidence 444555666666777 6788899999998776654 4554 4 4789999999987754
No 233
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.96 E-value=7.1e-05 Score=77.11 Aligned_cols=61 Identities=18% Similarity=0.140 Sum_probs=52.9
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCCCcccc
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~~~~~~ 291 (441)
...++.++++.+..+|++|+++++|++|..+++++++|++ +| .+++|++||++++.|...+
T Consensus 127 p~~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~~~v~gv~v~~~~~g~~~~i~a~~VVnAaG~wa~~l 193 (516)
T TIGR03377 127 PFRLVAANVLDAQEHGARIFTYTKVTGLIREGGRVTGVKVEDHKTGEEERIEAQVVINAAGIWAGRI 193 (516)
T ss_pred HHHHHHHHHHHHHHcCCEEEcCcEEEEEEEECCEEEEEEEEEcCCCcEEEEEcCEEEECCCcchHHH
Confidence 5788999999999999999999999999988888888774 24 4799999999999997654
No 234
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=97.96 E-value=6.9e-06 Score=88.65 Aligned_cols=41 Identities=22% Similarity=0.306 Sum_probs=38.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||||++|++||++|++.|++|+|+|+++.+||..+
T Consensus 539 gKkVaIIGgGPAGLsAA~~Lar~G~~VtV~Ek~~~~GG~lr 579 (1019)
T PRK09853 539 RKKVAVIGAGPAGLAAAYFLARAGHPVTVFEREENAGGVVK 579 (1019)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCeEEEEecccccCccee
Confidence 46899999999999999999999999999999999999874
No 235
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=97.95 E-value=6.4e-06 Score=84.35 Aligned_cols=41 Identities=20% Similarity=0.195 Sum_probs=35.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
..|+|||||++||++|..|.+.|++|+++||++.+||.|+-
T Consensus 2 krVaVIGaG~sGL~a~k~l~e~g~~~~~fE~~~~iGG~W~~ 42 (531)
T PF00743_consen 2 KRVAVIGAGPSGLAAAKNLLEEGLEVTCFEKSDDIGGLWRY 42 (531)
T ss_dssp -EEEEE--SHHHHHHHHHHHHTT-EEEEEESSSSSSGGGCH
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCeEEecCCCCCccCee
Confidence 36999999999999999999999999999999999999963
No 236
>KOG2614|consensus
Probab=97.95 E-value=8.2e-06 Score=78.14 Aligned_cols=36 Identities=17% Similarity=0.232 Sum_probs=33.0
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
+-+|||||||++||++|..|+|+|++|+|||++.-+
T Consensus 2 ~~~VvIvGgGI~Gla~A~~l~r~G~~v~VlE~~e~~ 37 (420)
T KOG2614|consen 2 EPKVVIVGGGIVGLATALALHRKGIDVVVLESREDP 37 (420)
T ss_pred CCcEEEECCcHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 458999999999999999999999999999997554
No 237
>PRK07538 hypothetical protein; Provisional
Probab=97.95 E-value=6.6e-06 Score=82.32 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=32.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
||+|||||++||++|..|+++|++|+|+|+++.+
T Consensus 2 dV~IVGaG~aGl~~A~~L~~~G~~v~v~E~~~~~ 35 (413)
T PRK07538 2 KVLIAGGGIGGLTLALTLHQRGIEVVVFEAAPEL 35 (413)
T ss_pred eEEEECCCHHHHHHHHHHHhCCCcEEEEEcCCcc
Confidence 8999999999999999999999999999998654
No 238
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=97.94 E-value=7.6e-06 Score=90.30 Aligned_cols=41 Identities=22% Similarity=0.336 Sum_probs=39.1
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.+||+|||||++||+||.+|+++|++|+|+|+++.+||...
T Consensus 163 ~~dVvIIGaGPAGLaAA~~aar~G~~V~liD~~~~~GG~~~ 203 (985)
T TIGR01372 163 HCDVLVVGAGPAGLAAALAAARAGARVILVDEQPEAGGSLL 203 (985)
T ss_pred cCCEEEECCCHHHHHHHHHHHhCCCcEEEEecCCCCCCeee
Confidence 58999999999999999999999999999999999999874
No 239
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=97.94 E-value=8.2e-06 Score=80.18 Aligned_cols=37 Identities=24% Similarity=0.451 Sum_probs=34.5
Q ss_pred cEEEECCChhHHHHHhhhccC--CCeEEEEcCCCCCCCc
Q psy2620 6 DAIVLGTGLKECILSGMLSVS--GKKVLHIDRNKYYGGE 42 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~--G~~V~vlE~~~~~GG~ 42 (441)
||+|||||++||++|+.|+++ |++|+|+|+.+..||.
T Consensus 1 DviIvGaG~AGl~lA~~L~~~~~g~~V~lle~~~~~~~~ 39 (370)
T TIGR01789 1 DCIIVGGGLAGGLIALRLQRARPDFRIRVIEAGRTIGGN 39 (370)
T ss_pred CEEEECccHHHHHHHHHHHhcCCCCeEEEEeCCCCCCCc
Confidence 899999999999999999987 9999999999877764
No 240
>PRK10262 thioredoxin reductase; Provisional
Probab=97.93 E-value=7.8e-06 Score=78.90 Aligned_cols=42 Identities=14% Similarity=0.186 Sum_probs=37.1
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
+.+||+|||||++||.||.+|++.|++|+++|+. ..||.+..
T Consensus 5 ~~~~vvIIGgGpaGl~aA~~l~~~g~~~~~ie~~-~~gg~~~~ 46 (321)
T PRK10262 5 KHSKLLILGSGPAGYTAAVYAARANLQPVLITGM-EKGGQLTT 46 (321)
T ss_pred CcCCEEEECCCHHHHHHHHHHHHCCCCeEEEEee-cCCCceec
Confidence 4689999999999999999999999999999965 57887643
No 241
>PLN02546 glutathione reductase
Probab=97.93 E-value=8.2e-06 Score=84.16 Aligned_cols=42 Identities=19% Similarity=0.215 Sum_probs=37.2
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCC---------CCCCCcccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN---------KYYGGESAS 45 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~---------~~~GG~~~t 45 (441)
+|||+|||+|.+|..||..+++.|++|+++|++ ..+||.|-.
T Consensus 79 ~yDvvVIG~GpaG~~aA~~aa~~G~~V~liE~~~~~~~~~~~~~~GGtC~n 129 (558)
T PLN02546 79 DFDLFTIGAGSGGVRASRFASNFGASAAVCELPFATISSDTLGGVGGTCVL 129 (558)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCeEEEEeccccccccccCCCccCcccC
Confidence 599999999999999999999999999999962 567887743
No 242
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=97.93 E-value=0.00017 Score=72.98 Aligned_cols=57 Identities=16% Similarity=0.121 Sum_probs=46.5
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|.+++++++|++|.. ++++..+.++++++.||.||.+++..|+
T Consensus 191 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~-~~~~~~v~~~~~~i~~d~vi~a~G~~p~ 247 (444)
T PRK09564 191 KEITDVMEEELRENGVELHLNEFVKSLIG-EDKVEGVVTDKGEYEADVVIVATGVKPN 247 (444)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEec-CCcEEEEEeCCCEEEcCEEEECcCCCcC
Confidence 46777888888999999999999999964 4555667777778999999999887764
No 243
>KOG2415|consensus
Probab=97.93 E-value=8.1e-06 Score=77.70 Aligned_cols=44 Identities=23% Similarity=0.293 Sum_probs=38.1
Q ss_pred CcccEEEECCChhHHHHHhhhcc------CCCeEEEEcCCCCCCCccccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSV------SGKKVLHIDRNKYYGGESASI 46 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~------~G~~V~vlE~~~~~GG~~~t~ 46 (441)
+.+||+|||||++||+||.+|.+ .-.+|+|+|+...+||.+-|.
T Consensus 75 e~~Dv~IVG~GPAGLsaAIrlKQla~~~~~dlrVcvvEKaa~~GghtlSG 124 (621)
T KOG2415|consen 75 EEVDVVIVGAGPAGLSAAIRLKQLAAKANKDLRVCVVEKAAEVGGHTLSG 124 (621)
T ss_pred ccccEEEECCCchhHHHHHHHHHHHHhcCCceEEEEEeeccccCCceecc
Confidence 46999999999999999998843 247899999999999998654
No 244
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=97.92 E-value=8.7e-06 Score=83.80 Aligned_cols=39 Identities=21% Similarity=0.355 Sum_probs=36.1
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.|||+|||||++|++||.+|++.|++|+|+|+ .+||.+.
T Consensus 211 ~~dvvIIGgGpaGl~aA~~la~~G~~v~li~~--~~GG~~~ 249 (517)
T PRK15317 211 PYDVLVVGGGPAGAAAAIYAARKGIRTGIVAE--RFGGQVL 249 (517)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCeee
Confidence 58999999999999999999999999999986 4899875
No 245
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=97.91 E-value=9.3e-06 Score=82.83 Aligned_cols=39 Identities=21% Similarity=0.292 Sum_probs=37.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
|||+|||+|++|+++|++|+++|++|+++|++...||.+
T Consensus 1 ~dv~ivg~Gp~G~~~a~~l~~~g~~v~~~e~~~~~~~~~ 39 (544)
T TIGR02462 1 YDVFIAGSGPIGCTYARLCVDAGLKVAMVEIGAADSFLK 39 (544)
T ss_pred CcEEEECCchHHHHHHHHHHHCCCeEEEEeccCccCCCc
Confidence 799999999999999999999999999999999998765
No 246
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.91 E-value=9.6e-06 Score=85.86 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||+|++||+||.+|++.|++|+|+|+.+.+||...
T Consensus 327 ~~~VaIIGaGpAGLsaA~~L~~~G~~V~V~E~~~~~GG~l~ 367 (654)
T PRK12769 327 DKRVAIIGAGPAGLACADVLARNGVAVTVYDRHPEIGGLLT 367 (654)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceee
Confidence 46999999999999999999999999999999999999864
No 247
>PRK05335 tRNA (uracil-5-)-methyltransferase Gid; Reviewed
Probab=97.90 E-value=1e-05 Score=79.45 Aligned_cols=37 Identities=19% Similarity=0.096 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
.||+|||||++|+.||+.|+++|++|+|+|+++....
T Consensus 3 ~dVvVIGGGlAGleAAlaLAr~Gl~V~LiE~rp~~~s 39 (436)
T PRK05335 3 KPVNVIGAGLAGSEAAWQLAKRGVPVELYEMRPVKKT 39 (436)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccCc
Confidence 5999999999999999999999999999998776543
No 248
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=97.90 E-value=9.1e-06 Score=89.36 Aligned_cols=41 Identities=17% Similarity=0.096 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||||++||+||.+|++.|++|+|+|+.+.+||..+
T Consensus 430 ~~kVaIIG~GPAGLsaA~~La~~G~~VtV~E~~~~~GG~l~ 470 (1006)
T PRK12775 430 LGKVAICGSGPAGLAAAADLVKYGVDVTVYEALHVVGGVLQ 470 (1006)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCcceee
Confidence 47999999999999999999999999999999999999764
No 249
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=97.90 E-value=1e-05 Score=81.71 Aligned_cols=41 Identities=20% Similarity=0.229 Sum_probs=38.4
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
..+||+|||+|++||+||..|++.|++|+|+|+++.+||.+
T Consensus 132 ~~~~V~IIG~G~aGl~aA~~l~~~G~~V~vie~~~~~GG~l 172 (449)
T TIGR01316 132 THKKVAVIGAGPAGLACASELAKAGHSVTVFEALHKPGGVV 172 (449)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHCCCcEEEEecCCCCCcEe
Confidence 35799999999999999999999999999999999999875
No 250
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=97.88 E-value=0.00019 Score=61.43 Aligned_cols=31 Identities=13% Similarity=0.181 Sum_probs=27.7
Q ss_pred EEECCChhHHHHHhhhccC-----CCeEEEEcCCCC
Q psy2620 8 IVLGTGLKECILSGMLSVS-----GKKVLHIDRNKY 38 (441)
Q Consensus 8 vIIGaG~~Gl~aA~~La~~-----G~~V~vlE~~~~ 38 (441)
+|||+|++|++++..|.+. ..+|+|+|+++.
T Consensus 1 AIIG~G~~G~~~l~~L~~~~~~~~~~~I~vfd~~~~ 36 (156)
T PF13454_consen 1 AIIGGGPSGLAVLERLLRQADPKPPLEITVFDPSPF 36 (156)
T ss_pred CEECcCHHHHHHHHHHHHhcCCCCCCEEEEEcCCCc
Confidence 5999999999999999876 579999999766
No 251
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=97.85 E-value=1.2e-05 Score=83.59 Aligned_cols=35 Identities=17% Similarity=0.296 Sum_probs=32.9
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
...+|+|||||++||++|..|+++|++|+|+||++
T Consensus 80 ~~~~VlIVGgGIaGLalAlaL~r~Gi~V~V~Er~~ 114 (668)
T PLN02927 80 KKSRVLVAGGGIGGLVFALAAKKKGFDVLVFEKDL 114 (668)
T ss_pred CCCCEEEECCCHHHHHHHHHHHhcCCeEEEEeccc
Confidence 45899999999999999999999999999999975
No 252
>TIGR00137 gid_trmFO tRNA:m(5)U-54 methyltransferase. This model represents an orthologous set of proteins present in relatively few bacteria but very tightly conserved where it occurs. It is closely related to gidA (glucose-inhibited division protein A), which appears to be present in all complete eubacterial genomes so far and in Saccharomyces cerevisiae. It was designated gid but is now recognized as a tRNA:m(5)U-54 methyltransferase and is now designated trmFO.
Probab=97.85 E-value=1.2e-05 Score=79.35 Aligned_cols=36 Identities=19% Similarity=0.128 Sum_probs=33.7
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
||+|||||++|+.||..|++.|++|+|+|+++..|-
T Consensus 2 ~VvVIGgGlAGleaA~~LAr~G~~V~LiE~rp~~~~ 37 (433)
T TIGR00137 2 PVHVIGGGLAGSEAAWQLAQAGVPVILYEMRPEKLT 37 (433)
T ss_pred CEEEECCCHHHHHHHHHHHhCCCcEEEEeccccccC
Confidence 799999999999999999999999999999887654
No 253
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=97.85 E-value=1.4e-05 Score=81.26 Aligned_cols=41 Identities=24% Similarity=0.314 Sum_probs=38.4
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||+|++|++||.+|++.|++|+|+|+.+.+||...
T Consensus 143 ~~~VvIIGaGpAGl~aA~~l~~~G~~V~vie~~~~~GG~l~ 183 (471)
T PRK12810 143 GKKVAVVGSGPAGLAAADQLARAGHKVTVFERADRIGGLLR 183 (471)
T ss_pred CCEEEEECcCHHHHHHHHHHHhCCCcEEEEecCCCCCceee
Confidence 47999999999999999999999999999999999998753
No 254
>KOG1238|consensus
Probab=97.85 E-value=0.00044 Score=70.25 Aligned_cols=37 Identities=32% Similarity=0.487 Sum_probs=33.8
Q ss_pred CcccEEEECCChhHHHHHhhhccC-CCeEEEEcCCCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVS-GKKVLHIDRNKYY 39 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~-G~~V~vlE~~~~~ 39 (441)
..||.||||||-+|++.|+.|++. .++|++||+...+
T Consensus 56 ~~yDyIVVGgGtAGcvlAarLSEn~~~~VLLLEaGg~~ 93 (623)
T KOG1238|consen 56 SSYDYIVVGGGTAGCVLAARLSENPNWSVLLLEAGGDP 93 (623)
T ss_pred cCCCEEEECCCchhHHHHHhhccCCCceEEEEecCCCC
Confidence 579999999999999999999987 5999999997665
No 255
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=97.85 E-value=1.4e-05 Score=85.92 Aligned_cols=41 Identities=22% Similarity=0.263 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||||++||+||.+|++.|++|+|+|+++.+||..+
T Consensus 431 ~~~V~IIGaGpAGl~aA~~l~~~G~~V~v~e~~~~~GG~l~ 471 (752)
T PRK12778 431 GKKVAVIGSGPAGLSFAGDLAKRGYDVTVFEALHEIGGVLK 471 (752)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 46999999999999999999999999999999999999864
No 256
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.84 E-value=1.4e-05 Score=82.14 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=35.9
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.|||+|||||++|++||.+|++.|++|+++|. .+||.+.
T Consensus 212 ~~dVvIIGgGpAGl~AA~~la~~G~~v~li~~--~~GG~~~ 250 (515)
T TIGR03140 212 PYDVLVVGGGPAGAAAAIYAARKGLRTAMVAE--RIGGQVK 250 (515)
T ss_pred CCCEEEECCCHHHHHHHHHHHHCCCcEEEEec--CCCCccc
Confidence 59999999999999999999999999999985 6898775
No 257
>PLN02852 ferredoxin-NADP+ reductase
Probab=97.83 E-value=1.7e-05 Score=80.06 Aligned_cols=42 Identities=24% Similarity=0.169 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHhhhcc--CCCeEEEEcCCCCCCCcccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSV--SGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~--~G~~V~vlE~~~~~GG~~~t 45 (441)
..+|+|||||++|+.||..|++ .|++|+|+|+.+.+||..+.
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vtv~E~~p~pgGlvr~ 69 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGARVDIIERLPTPFGLVRS 69 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCCeEEEEecCCCCcceEee
Confidence 4689999999999999999987 79999999999999998764
No 258
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=97.82 E-value=1.6e-05 Score=83.18 Aligned_cols=41 Identities=24% Similarity=0.340 Sum_probs=37.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCC-CCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN-KYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~-~~~GG~~~ 44 (441)
+|||||||+|.+|..||..+++.|++|+++|+. +.+||.|.
T Consensus 116 ~yDviVIG~G~gG~~aA~~aa~~G~kV~lie~~~~~lGGtCv 157 (659)
T PTZ00153 116 EYDVGIIGCGVGGHAAAINAMERGLKVIIFTGDDDSIGGTCV 157 (659)
T ss_pred cCCEEEECCCHHHHHHHHHHHHCCCcEEEEeCCCCcccccee
Confidence 699999999999999999999999999999974 47899874
No 259
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=97.78 E-value=2.1e-05 Score=83.09 Aligned_cols=41 Identities=22% Similarity=0.243 Sum_probs=38.6
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||+|++||+||.+|++.|++|+|+|+++.+||..+
T Consensus 193 ~k~VaIIGaGpAGl~aA~~La~~G~~Vtv~e~~~~~GG~l~ 233 (652)
T PRK12814 193 GKKVAIIGAGPAGLTAAYYLLRKGHDVTIFDANEQAGGMMR 233 (652)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCcEEEEecCCCCCceee
Confidence 46899999999999999999999999999999999999864
No 260
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=97.78 E-value=2e-05 Score=78.83 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=31.8
Q ss_pred cEEEECCChhHHHHHhhhccCC-CeEEEEcCCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSG-KKVLHIDRNKYYG 40 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~~~G 40 (441)
+|+|||||++||++|..|+++| .+|+|+||++.++
T Consensus 2 ~V~IiGgGiaGla~A~~L~~~g~~~v~v~Er~~~~~ 37 (414)
T TIGR03219 2 RVAIIGGGIAGVALALNLCKHSHLNVQLFEAAPAFG 37 (414)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCCCEEEEecCCcCC
Confidence 6999999999999999999998 5999999987653
No 261
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=97.76 E-value=2.6e-05 Score=79.14 Aligned_cols=40 Identities=20% Similarity=0.203 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
..+|+|||||++|+.+|..|++.|++|+|+|+++.+||..
T Consensus 140 ~~~VvIIGgGpaGl~aA~~l~~~g~~V~lie~~~~~gG~l 179 (457)
T PRK11749 140 GKKVAVIGAGPAGLTAAHRLARKGYDVTIFEARDKAGGLL 179 (457)
T ss_pred CCcEEEECCCHHHHHHHHHHHhCCCeEEEEccCCCCCcEe
Confidence 4699999999999999999999999999999999999875
No 262
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=97.72 E-value=3.1e-05 Score=78.57 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=38.5
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||+|++|++||.+|++.|++|+++|+.+.+||..+
T Consensus 141 ~~~V~IIG~GpaGl~aA~~l~~~G~~V~i~e~~~~~gG~l~ 181 (467)
T TIGR01318 141 GKRVAVIGAGPAGLACADILARAGVQVVVFDRHPEIGGLLT 181 (467)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 46899999999999999999999999999999999999764
No 263
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=97.72 E-value=2.9e-05 Score=79.17 Aligned_cols=57 Identities=9% Similarity=-0.101 Sum_probs=42.6
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CC---eEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GT---EIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g---~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|.++++++.+++|...++.+ .|.. ++ +++.+|.||.+.+..|+
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~-~v~~~~~~~~~~i~~D~vl~a~G~~pn 280 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIEAKV-KVTFTDSTNGIEEEYDTVLLAIGRDAC 280 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcCCeE-EEEEecCCcceEEEeCEEEEEecCCcC
Confidence 4567777778888999999999999987655543 3443 33 47999999988776653
No 264
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=97.72 E-value=2.8e-05 Score=79.84 Aligned_cols=44 Identities=20% Similarity=0.237 Sum_probs=39.9
Q ss_pred CCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 2 ~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
..++||||||||.+||.||..++.+|.+|+++|+....+|.+..
T Consensus 4 ~~~~DvvVIG~G~AGl~AAi~aa~~g~~V~l~~K~~~~rg~t~~ 47 (562)
T COG1053 4 IHEFDVVVIGGGGAGLRAAIEAAEAGLKVALLSKAPPKRGHTVA 47 (562)
T ss_pred cccCCEEEECCcHHHHHHHHHHHhcCCcEEEEEccccCCCchhh
Confidence 45799999999999999999999999999999999998876543
No 265
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=97.72 E-value=3e-05 Score=81.81 Aligned_cols=41 Identities=24% Similarity=0.289 Sum_probs=38.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||+|++||++|..|++.|++|+|+|+++.+||..+
T Consensus 310 ~kkVaIIG~GpaGl~aA~~L~~~G~~Vtv~e~~~~~GG~l~ 350 (639)
T PRK12809 310 SEKVAVIGAGPAGLGCADILARAGVQVDVFDRHPEIGGMLT 350 (639)
T ss_pred CCEEEEECcCHHHHHHHHHHHHcCCcEEEEeCCCCCCCeee
Confidence 47899999999999999999999999999999999999864
No 266
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=97.66 E-value=4.1e-05 Score=68.25 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
||||||||++|+.||..|++.|.+|+++|+.+
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 79999999999999999999999999997754
No 267
>PTZ00188 adrenodoxin reductase; Provisional
Probab=97.65 E-value=4.8e-05 Score=75.96 Aligned_cols=42 Identities=14% Similarity=0.050 Sum_probs=37.4
Q ss_pred cccEEEECCChhHHHHHhhh-ccCCCeEEEEcCCCCCCCcccc
Q psy2620 4 EYDAIVLGTGLKECILSGML-SVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~L-a~~G~~V~vlE~~~~~GG~~~t 45 (441)
...|+|||||++|+.||.+| ++.|++|+++|+.+.+||.++.
T Consensus 39 ~krVAIVGaGPAGlyaA~~Ll~~~g~~VtlfEk~p~pgGLvR~ 81 (506)
T PTZ00188 39 PFKVGIIGAGPSALYCCKHLLKHERVKVDIFEKLPNPYGLIRY 81 (506)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCeEEEEecCCCCccEEEE
Confidence 35799999999999999975 5679999999999999998864
No 268
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=97.63 E-value=7.2e-05 Score=56.11 Aligned_cols=35 Identities=29% Similarity=0.373 Sum_probs=33.3
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
.|+|||||..|+-+|..|++.|.+|+++++++.+.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vtli~~~~~~~ 35 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVTLIERSDRLL 35 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEEESSSSSS
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEEEEeccchhh
Confidence 38999999999999999999999999999999887
No 269
>KOG1335|consensus
Probab=97.60 E-value=5.4e-05 Score=71.58 Aligned_cols=42 Identities=21% Similarity=0.393 Sum_probs=39.8
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.+|||+|||+|+.|-.||...++.|.+...+|++..+||.+-
T Consensus 38 ~d~DvvvIG~GpGGyvAAikAaQlGlkTacvEkr~~LGGTcL 79 (506)
T KOG1335|consen 38 NDYDVVVIGGGPGGYVAAIKAAQLGLKTACVEKRGTLGGTCL 79 (506)
T ss_pred ccCCEEEECCCCchHHHHHHHHHhcceeEEEeccCccCceee
Confidence 369999999999999999999999999999999999999884
No 270
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=97.60 E-value=5.7e-05 Score=80.85 Aligned_cols=39 Identities=33% Similarity=0.260 Sum_probs=35.8
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (441)
...|+|||+|++||+||++|++.|++|+++|+.+..|+.
T Consensus 383 gKKVaVVGaGPAGLsAA~~La~~Gh~Vtv~E~~~i~gl~ 421 (1028)
T PRK06567 383 NYNILVTGLGPAGFSLSYYLLRSGHNVTAIDGLKITLLP 421 (1028)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCCeEEEEccccccccc
Confidence 468999999999999999999999999999998877665
No 271
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=97.59 E-value=5.5e-05 Score=76.77 Aligned_cols=57 Identities=4% Similarity=-0.070 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCC--eEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGT--EIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g--~~~~a~~vI~~~~~~~~ 289 (441)
.++.+.+.+.++..|.++++++.|++|..+++. +.+..+| +++.+|.||.+++..|+
T Consensus 211 ~e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~~~-v~~~~~g~~~~i~~D~vivA~G~~p~ 269 (458)
T PRK06912 211 EDIAHILREKLENDGVKIFTGAALKGLNSYKKQ-ALFEYEGSIQEVNAEFVLVSVGRKPR 269 (458)
T ss_pred HHHHHHHHHHHHHCCCEEEECCEEEEEEEcCCE-EEEEECCceEEEEeCEEEEecCCccC
Confidence 467778888888899999999999999765443 3344444 47999999998876653
No 272
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=97.58 E-value=6.6e-05 Score=76.54 Aligned_cols=40 Identities=23% Similarity=0.312 Sum_probs=37.9
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.+|+|||+|++|+.||.+|++.|++|+|+|+.+++||...
T Consensus 144 ~~V~IIGaG~aGl~aA~~L~~~g~~V~v~e~~~~~gG~l~ 183 (485)
T TIGR01317 144 KKVAVVGSGPAGLAAADQLNRAGHTVTVFEREDRCGGLLM 183 (485)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCCCceee
Confidence 6999999999999999999999999999999999998763
No 273
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=97.57 E-value=5.5e-05 Score=75.68 Aligned_cols=41 Identities=24% Similarity=0.247 Sum_probs=38.8
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
..|.|||||++||+||..|+++|++|+|+|+.+..||....
T Consensus 124 ~~VaviGaGPAGl~~a~~L~~~G~~Vtv~e~~~~~GGll~y 164 (457)
T COG0493 124 KKVAVIGAGPAGLAAADDLSRAGHDVTVFERVALDGGLLLY 164 (457)
T ss_pred CEEEEECCCchHhhhHHHHHhCCCeEEEeCCcCCCceeEEe
Confidence 58999999999999999999999999999999999999853
No 274
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=97.55 E-value=8.4e-05 Score=72.70 Aligned_cols=41 Identities=22% Similarity=0.249 Sum_probs=38.2
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||+|++|+.+|..|++.|++|+++|+.+.+||...
T Consensus 18 ~~~VvIIG~G~aGl~aA~~l~~~g~~v~lie~~~~~gg~~~ 58 (352)
T PRK12770 18 GKKVAIIGAGPAGLAAAGYLACLGYEVHVYDKLPEPGGLML 58 (352)
T ss_pred CCEEEEECcCHHHHHHHHHHHHCCCcEEEEeCCCCCCceee
Confidence 35999999999999999999999999999999999998763
No 275
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=97.53 E-value=7.2e-05 Score=77.91 Aligned_cols=40 Identities=20% Similarity=0.170 Sum_probs=37.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.+|+|||+|++||++|..|++.|++|+|+|+++.+||..+
T Consensus 138 ~~V~VIGaGpaGL~aA~~l~~~G~~V~v~e~~~~~GG~l~ 177 (564)
T PRK12771 138 KRVAVIGGGPAGLSAAYHLRRMGHAVTIFEAGPKLGGMMR 177 (564)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCCeee
Confidence 5899999999999999999999999999999999999763
No 276
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=97.49 E-value=8.3e-05 Score=73.69 Aligned_cols=36 Identities=33% Similarity=0.415 Sum_probs=33.4
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
|++.||||||||||+|+-||...||-|.+++++--+
T Consensus 1 ~~~~~DVIVIGgGHAG~EAA~AaARmG~ktlLlT~~ 36 (621)
T COG0445 1 MPKEYDVIVIGGGHAGVEAALAAARMGAKTLLLTLN 36 (621)
T ss_pred CCCCCceEEECCCccchHHHHhhhccCCeEEEEEcC
Confidence 566799999999999999999999999999998875
No 277
>KOG0399|consensus
Probab=97.48 E-value=8.8e-05 Score=78.50 Aligned_cols=41 Identities=20% Similarity=0.281 Sum_probs=38.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
-..|.|||+|++||+||..|-++|+.|+|+||.+++||...
T Consensus 1785 g~~vaiigsgpaglaaadqlnk~gh~v~vyer~dr~ggll~ 1825 (2142)
T KOG0399|consen 1785 GKRVAIIGSGPAGLAAADQLNKAGHTVTVYERSDRVGGLLM 1825 (2142)
T ss_pred CcEEEEEccCchhhhHHHHHhhcCcEEEEEEecCCcCceee
Confidence 36899999999999999999999999999999999999874
No 278
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=97.46 E-value=0.00012 Score=74.00 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
.+.+.+.+. ...|.++++++.|+++..+++.+ .|.+ +|+++.+|.||.+++..|+
T Consensus 211 ~~~~~l~~~-~~~gI~i~~~~~V~~i~~~~~~v-~v~~~~g~~i~~D~vl~a~G~~pn 266 (452)
T TIGR03452 211 DISDRFTEI-AKKKWDIRLGRNVTAVEQDGDGV-TLTLDDGSTVTADVLLVATGRVPN 266 (452)
T ss_pred HHHHHHHHH-HhcCCEEEeCCEEEEEEEcCCeE-EEEEcCCCEEEcCEEEEeeccCcC
Confidence 445555443 34689999999999998665553 3444 5778999999998876653
No 279
>PRK07846 mycothione reductase; Reviewed
Probab=97.45 E-value=0.00013 Score=73.84 Aligned_cols=55 Identities=15% Similarity=0.179 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
++.+.+.+. ...|.+++++++|+++..+++.+ .|.+ +|+++.+|.||.+++..|+
T Consensus 208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~~~v-~v~~~~g~~i~~D~vl~a~G~~pn 263 (451)
T PRK07846 208 DISERFTEL-ASKRWDVRLGRNVVGVSQDGSGV-TLRLDDGSTVEADVLLVATGRVPN 263 (451)
T ss_pred HHHHHHHHH-HhcCeEEEeCCEEEEEEEcCCEE-EEEECCCcEeecCEEEEEECCccC
Confidence 455555443 35689999999999997655543 3444 6788999999988776653
No 280
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.44 E-value=0.00042 Score=67.09 Aligned_cols=69 Identities=16% Similarity=0.163 Sum_probs=58.6
Q ss_pred CeeeecCC---cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeCCeEEEcCEEEECCCCCcccc
Q psy2620 223 PYLYPMYG---LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRV 291 (441)
Q Consensus 223 ~~~~~~gG---~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~g~~~~a~~vI~~~~~~~~~~ 291 (441)
++..|.+| ...++++|.+.+.+.|++++.+++|++|..+++++++|.+++++++||+||.++++|...+
T Consensus 125 g~~~~~~g~v~p~~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~~~~~~v~~~~g~~~a~~vV~a~G~~~~~l 196 (337)
T TIGR02352 125 AVFYPDDAHVDPRALLKALEKALEKLGVEIIEHTEVQHIEIRGEKVTAIVTPSGDVQADQVVLAAGAWAGEL 196 (337)
T ss_pred EEEcCCCceEChHHHHHHHHHHHHHcCCEEEccceEEEEEeeCCEEEEEEcCCCEEECCEEEEcCChhhhhc
Confidence 34455566 6899999999999999999999999999988888888888656899999999999886544
No 281
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=97.43 E-value=0.00013 Score=74.08 Aligned_cols=57 Identities=12% Similarity=0.092 Sum_probs=44.3
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.++..|++++++++|++|..+++.+. +.. +|+++.+|.||.+++..|+
T Consensus 218 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~~~~~-v~~~~g~~l~~D~vl~a~G~~pn 275 (466)
T PRK07845 218 ADAAEVLEEVFARRGMTVLKRSRAESVERTGDGVV-VTLTDGRTVEGSHALMAVGSVPN 275 (466)
T ss_pred HHHHHHHHHHHHHCCcEEEcCCEEEEEEEeCCEEE-EEECCCcEEEecEEEEeecCCcC
Confidence 45667777788889999999999999976555543 443 6788999999988776653
No 282
>PRK13984 putative oxidoreductase; Provisional
Probab=97.42 E-value=0.00014 Score=76.54 Aligned_cols=41 Identities=17% Similarity=0.176 Sum_probs=38.2
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..+|+|||+|++|++||..|++.|++|+|+|+.+.+||...
T Consensus 283 ~~~v~IIGaG~aGl~aA~~L~~~G~~v~vie~~~~~gG~~~ 323 (604)
T PRK13984 283 NKKVAIVGSGPAGLSAAYFLATMGYEVTVYESLSKPGGVMR 323 (604)
T ss_pred CCeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCCceEe
Confidence 46899999999999999999999999999999999998753
No 283
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=97.37 E-value=0.00014 Score=78.32 Aligned_cols=33 Identities=15% Similarity=0.321 Sum_probs=31.5
Q ss_pred cEEEECCChhHHHHHhhhccC--CCeEEEEcCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVS--GKKVLHIDRNKY 38 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~--G~~V~vlE~~~~ 38 (441)
+|+|||||++||++|..|+++ |++|+|+|+++.
T Consensus 2 ~V~IIGaGpAGLaaAi~L~~~~~G~~V~vlEr~~~ 36 (765)
T PRK08255 2 RIVCIGGGPAGLYFALLMKLLDPAHEVTVVERNRP 36 (765)
T ss_pred eEEEECCCHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 699999999999999999998 899999999986
No 284
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=97.22 E-value=0.023 Score=54.10 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=36.2
Q ss_pred ccEEEECCChhHHHHHhhhccC----CCeEEEEcCCCCCCCccccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVS----GKKVLHIDRNKYYGGESASI 46 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~----G~~V~vlE~~~~~GG~~~t~ 46 (441)
..+-|||+|++||++|.+|-|. |.++-+||--+..||..-..
T Consensus 23 KsaY~vG~GlAsLA~AvfLIRDg~m~G~~IHilEelpl~GGSlDG~ 68 (587)
T COG4716 23 KSAYIVGGGLASLAAAVFLIRDGQMDGKRIHILEELPLAGGSLDGA 68 (587)
T ss_pred ceeEEEccchHhhhheeEEEeccccCCceeEeeecCcccCCCCCCC
Confidence 4578999999999999999765 68999999999999986543
No 285
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=97.08 E-value=0.00063 Score=66.96 Aligned_cols=54 Identities=20% Similarity=0.175 Sum_probs=42.3
Q ss_pred chHHHHHHHHHHH-cCcEEEcccceeEEEEeCC-EEEEEEe--C-C--eEEEcCEEEECCC
Q psy2620 232 GELPQSFARLSAI-YGGTYMLDKPVDEIVIENG-KVVGVRS--G-T--EIARCKQVYCDPS 285 (441)
Q Consensus 232 ~~l~~~l~~~~~~-~G~~i~~~~~V~~i~~~~~-~~~~v~~--~-g--~~~~a~~vI~~~~ 285 (441)
..+.++|.+.+++ -+.+++.++.+.+|..+++ .+.||.+ . + .++.|+.||.+++
T Consensus 133 ~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~~~~~Gv~~~~~~~~~~~~~a~~vVLATG 193 (518)
T COG0029 133 KEIMTALLKKVRNRPNITVLEGAEALDLIIEDGIGVAGVLVLNRNGELGTFRAKAVVLATG 193 (518)
T ss_pred HHHHHHHHHHHhcCCCcEEEecchhhhhhhcCCceEeEEEEecCCCeEEEEecCeEEEecC
Confidence 4688888888876 5889999999999998888 4448875 2 3 6789999998665
No 286
>KOG2960|consensus
Probab=97.03 E-value=0.00033 Score=61.03 Aligned_cols=40 Identities=23% Similarity=0.313 Sum_probs=35.5
Q ss_pred cccEEEECCChhHHHHHhhhccC--CCeEEEEcCCCCCCCcc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVS--GKKVLHIDRNKYYGGES 43 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~ 43 (441)
+.||||||+|-+||+||++.+++ ..+|.++|+.--+||..
T Consensus 76 esDvviVGAGSaGLsAAY~I~~~rPdlkvaIIE~SVaPGGGa 117 (328)
T KOG2960|consen 76 ESDVVIVGAGSAGLSAAYVIAKNRPDLKVAIIESSVAPGGGA 117 (328)
T ss_pred ccceEEECCCccccceeeeeeccCCCceEEEEEeeecCCCcc
Confidence 35999999999999999999954 58999999999888765
No 287
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=97.02 E-value=0.0014 Score=63.59 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=26.9
Q ss_pred cccEEEECCChhHHHHHhhhccCC-CeEEEEcCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRNK 37 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~ 37 (441)
.||+|+||.|+.+|+.|+.|...+ .+++.||+++
T Consensus 2 ~~D~igIG~GP~nLslA~~l~~~~~~~~~f~e~~~ 36 (341)
T PF13434_consen 2 IYDLIGIGFGPFNLSLAALLEEHGDLKALFLERRP 36 (341)
T ss_dssp EESEEEE--SHHHHHHHHHHHHHH---EEEEES-S
T ss_pred ceeEEEEeeCHHHHHHHHHhhhcCCCCEEEEecCC
Confidence 589999999999999999999877 9999999865
No 288
>KOG2311|consensus
Probab=96.94 E-value=0.00065 Score=66.17 Aligned_cols=34 Identities=26% Similarity=0.525 Sum_probs=31.3
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
..||||||||||+|+-||++.||-|.+.++|-.+
T Consensus 27 ~~~dVvVIGgGHAG~EAAaAaaR~Ga~TlLlT~~ 60 (679)
T KOG2311|consen 27 STYDVVVIGGGHAGCEAAAAAARLGARTLLLTHN 60 (679)
T ss_pred CcccEEEECCCccchHHHHHHHhcCCceEEeecc
Confidence 4689999999999999999999999998888776
No 289
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=96.93 E-value=0.012 Score=63.73 Aligned_cols=56 Identities=18% Similarity=0.117 Sum_probs=43.7
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
.+.+.+.+.++.+|+++++++.|++|.. ++++.+|.+ +|+++.+|.||.+++..|+
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~-~~~~~~v~~~dG~~i~~D~Vi~a~G~~Pn 239 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVG-ATKADRIRFKDGSSLEADLIVMAAGIRPN 239 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEc-CCceEEEEECCCCEEEcCEEEECCCCCcC
Confidence 3455666778889999999999999864 345566765 6889999999998887653
No 290
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=96.75 E-value=0.0015 Score=65.05 Aligned_cols=56 Identities=13% Similarity=0.142 Sum_probs=43.2
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.+++.|++++++++|++|.. ++. +.+.+ +|+++.||.||.+.+..|+
T Consensus 186 ~~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~~~-~~v~l~~g~~i~aD~Vv~a~G~~pn 242 (396)
T PRK09754 186 PPVQRYLLQRHQQAGVRILLNNAIEHVVD-GEK-VELTLQSGETLQADVVIYGIGISAN 242 (396)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEEc-CCE-EEEEECCCCEEECCEEEECCCCChh
Confidence 34556677778889999999999999865 343 34554 6788999999999888764
No 291
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=96.72 E-value=0.024 Score=59.08 Aligned_cols=55 Identities=18% Similarity=0.170 Sum_probs=46.2
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEe-CCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIE-NGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~-~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..|.++|.+.+...|++++.++.++++..+ +|+|+||.. +| ..+.|+.||++++-
T Consensus 126 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~g~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 126 HALLHTLYQGNLKNGTTFLNEWYAVDLVKNQDGAVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHHHHHhccCCEEEECcEEEEEEEcCCCeEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 568899999888899999999999999884 789999974 34 46899999987653
No 292
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=96.59 E-value=0.0023 Score=64.20 Aligned_cols=53 Identities=15% Similarity=0.045 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.+++.|++++++++|+++. .+. |.+ +|+++.+|.||.+++.-|+
T Consensus 228 ~~~~~~~~~~L~~~gV~v~~~~~v~~v~--~~~---v~~~~g~~i~~d~vi~~~G~~~~ 281 (424)
T PTZ00318 228 QALRKYGQRRLRRLGVDIRTKTAVKEVL--DKE---VVLKDGEVIPTGLVVWSTGVGPG 281 (424)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeEEEEe--CCE---EEECCCCEEEccEEEEccCCCCc
Confidence 3567777788899999999999999985 233 334 6889999999998876543
No 293
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=96.59 E-value=0.002 Score=65.07 Aligned_cols=53 Identities=11% Similarity=0.102 Sum_probs=41.3
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.+++.|.+++++++|++|. +. .|.+ +|+++.+|.||.+++..|+
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~~---~v~~~~g~~~~~D~vl~a~G~~pn 242 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN--GN---EVTFKSGKVEHYDMIIEGVGTHPN 242 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe--CC---EEEECCCCEEEeCEEEECcCCCcC
Confidence 3567777888889999999999999985 22 2333 5778999999998887663
No 294
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=96.55 E-value=0.002 Score=64.17 Aligned_cols=40 Identities=28% Similarity=0.344 Sum_probs=38.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.+|+|||+|..|+.+|..|+++|++|+++|+++++||...
T Consensus 137 ~~v~vvG~G~~gle~A~~~~~~G~~v~l~e~~~~~~~~~~ 176 (415)
T COG0446 137 KDVVVVGAGPIGLEAAEAAAKRGKKVTLIEAADRLGGQLL 176 (415)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEcccccchhhh
Confidence 5899999999999999999999999999999999999863
No 295
>KOG4716|consensus
Probab=96.39 E-value=0.0028 Score=59.32 Aligned_cols=34 Identities=29% Similarity=0.306 Sum_probs=31.7
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
-+||.||||||-+||+||-..++-|.+|.+||--
T Consensus 18 ydyDLIviGgGSgGLacaKeAa~~G~kV~~lDfV 51 (503)
T KOG4716|consen 18 YDYDLIVIGGGSGGLACAKEAADLGAKVACLDFV 51 (503)
T ss_pred CCccEEEEcCCcchhhHHHHHHhcCCcEEEEeec
Confidence 4699999999999999999999999999999963
No 296
>KOG1800|consensus
Probab=96.31 E-value=0.0047 Score=58.79 Aligned_cols=42 Identities=12% Similarity=-0.005 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHhhhccC--CCeEEEEcCCCCCCCcccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVS--GKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~--G~~V~vlE~~~~~GG~~~t 45 (441)
...|.|||+|++|..+|..|.++ +.+|.++|+.+.++|..+.
T Consensus 20 ~p~vcIVGsGPAGfYtA~~LLk~~~~~~Vdi~Ek~PvPFGLvRy 63 (468)
T KOG1800|consen 20 TPRVCIVGSGPAGFYTAQHLLKRHPNAHVDIFEKLPVPFGLVRY 63 (468)
T ss_pred CceEEEECCCchHHHHHHHHHhcCCCCeeEeeecCCcccceeee
Confidence 45899999999999999998874 6899999999999999864
No 297
>COG1206 Gid NAD(FAD)-utilizing enzyme possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=96.29 E-value=0.004 Score=58.10 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=35.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
.--|.|||||++|+-||+.++++|..|.+.|-++.-+--.+
T Consensus 3 ~~~i~VIGaGLAGSEAAwqiA~~Gv~V~L~EMRp~k~TpaH 43 (439)
T COG1206 3 QQPINVIGAGLAGSEAAWQIAKRGVPVILYEMRPVKGTPAH 43 (439)
T ss_pred CCceEEEcccccccHHHHHHHHcCCcEEEEEcccccCCCcc
Confidence 34689999999999999999999999999999877665443
No 298
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.10 E-value=0.0027 Score=59.62 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=33.3
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
..|||+|||+|++|.+||.|.||+|.+.=++- .+.||..
T Consensus 210 ~~yDVLvVGgGPAgaaAAiYaARKGiRTGl~a--erfGGQv 248 (520)
T COG3634 210 DAYDVLVVGGGPAGAAAAIYAARKGIRTGLVA--ERFGGQV 248 (520)
T ss_pred CCceEEEEcCCcchhHHHHHHHhhcchhhhhh--hhhCCee
Confidence 46999999999999999999999998876543 5678876
No 299
>KOG0405|consensus
Probab=96.01 E-value=0.0072 Score=56.87 Aligned_cols=43 Identities=21% Similarity=0.295 Sum_probs=39.6
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~t 45 (441)
..||..|||||-.|+.+|.+.+..|.+|.++|..-.+||.|.-
T Consensus 19 k~fDylvIGgGSGGvasARrAa~~GAkv~l~E~~f~lGGTCVn 61 (478)
T KOG0405|consen 19 KDFDYLVIGGGSGGVASARRAASHGAKVALCELPFGLGGTCVN 61 (478)
T ss_pred cccceEEEcCCcchhHHhHHHHhcCceEEEEecCCCcCceEEe
Confidence 3699999999999999999999999999999998899998743
No 300
>KOG3855|consensus
Probab=95.98 E-value=0.0074 Score=58.11 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=30.7
Q ss_pred cccEEEECCChhHHHHHhhhccC----CCeEEEEcCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVS----GKKVLHIDRNKY 38 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~----G~~V~vlE~~~~ 38 (441)
.|||||||||+.|++.|+.|... -++|++||..+.
T Consensus 36 ~~dVvIvGgGpvg~aLAa~l~snp~~~~~kv~Lld~~~s 74 (481)
T KOG3855|consen 36 KYDVVIVGGGPVGLALAAALGSNPPFQDKKVLLLDAGDS 74 (481)
T ss_pred cCCEEEECCchHHHHHHHHhccCCccchheeeEEecccC
Confidence 69999999999999999999854 479999998743
No 301
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=95.90 E-value=0.0073 Score=53.08 Aligned_cols=32 Identities=25% Similarity=0.427 Sum_probs=26.5
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||.|..||.+|..||++|++|+.+|.+.
T Consensus 2 ~I~ViGlGyvGl~~A~~lA~~G~~V~g~D~~~ 33 (185)
T PF03721_consen 2 KIAVIGLGYVGLPLAAALAEKGHQVIGVDIDE 33 (185)
T ss_dssp EEEEE--STTHHHHHHHHHHTTSEEEEE-S-H
T ss_pred EEEEECCCcchHHHHHHHHhCCCEEEEEeCCh
Confidence 48999999999999999999999999999865
No 302
>KOG0404|consensus
Probab=95.82 E-value=0.0071 Score=53.40 Aligned_cols=51 Identities=22% Similarity=0.262 Sum_probs=39.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcC---CCC-CCCcccccCchHHHhhhh
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDR---NKY-YGGESASITPLEELFSKF 56 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~---~~~-~GG~~~t~~~~~~~~~g~ 56 (441)
-.|+|||+|+++-+||.|++|+-.+-+++|- ++. +||...|.+ --+-+|||
T Consensus 9 e~v~IiGSGPAa~tAAiYaaraelkPllfEG~~~~~i~pGGQLtTTT-~veNfPGF 63 (322)
T KOG0404|consen 9 ENVVIIGSGPAAHTAAIYAARAELKPLLFEGMMANGIAPGGQLTTTT-DVENFPGF 63 (322)
T ss_pred eeEEEEccCchHHHHHHHHhhcccCceEEeeeeccCcCCCceeeeee-ccccCCCC
Confidence 4899999999999999999999999999995 343 477766554 22234555
No 303
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=95.81 E-value=0.01 Score=58.32 Aligned_cols=53 Identities=13% Similarity=0.056 Sum_probs=41.5
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+.+.+.+.+++.|+++++++.|++|. ++ .|.+ +|+++.+|.||.+++..|+
T Consensus 191 ~~~~~~~~~~l~~~gV~v~~~~~v~~i~--~~---~v~~~~g~~i~~D~vi~a~G~~p~ 244 (364)
T TIGR03169 191 AKVRRLVLRLLARRGIEVHEGAPVTRGP--DG---ALILADGRTLPADAILWATGARAP 244 (364)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCeeEEEc--CC---eEEeCCCCEEecCEEEEccCCChh
Confidence 3466777778889999999999999884 23 3444 6789999999998887653
No 304
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.74 E-value=0.01 Score=50.80 Aligned_cols=32 Identities=25% Similarity=0.385 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||||-.|.++|..|+++|++|.++.++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g~~V~l~~~~~ 32 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNGHEVTLWGRDE 32 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCTEEEEEETSCH
T ss_pred CEEEECcCHHHHHHHHHHHHcCCEEEEEeccH
Confidence 37899999999999999999999999999875
No 305
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=95.57 E-value=0.014 Score=57.68 Aligned_cols=57 Identities=7% Similarity=0.082 Sum_probs=44.8
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
..+...+.+.++..|.+++++++|++|..+++. ..|.+ +|+++.||.||.+++..|+
T Consensus 183 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~~-~~v~~~~g~~i~~D~vI~a~G~~p~ 240 (377)
T PRK04965 183 PEVSSRLQHRLTEMGVHLLLKSQLQGLEKTDSG-IRATLDSGRSIEVDAVIAAAGLRPN 240 (377)
T ss_pred HHHHHHHHHHHHhCCCEEEECCeEEEEEccCCE-EEEEEcCCcEEECCEEEECcCCCcc
Confidence 345667777788899999999999999765544 34554 6789999999999888764
No 306
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.52 E-value=0.015 Score=57.05 Aligned_cols=53 Identities=21% Similarity=0.195 Sum_probs=40.6
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCe-EEEcCEEEECCCCCcc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTE-IARCKQVYCDPSYVQD 289 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~-~~~a~~vI~~~~~~~~ 289 (441)
.++.+...+.++++|++|+++++|++|.. + +|.+ +|+ +|.++.||-+++.-++
T Consensus 209 ~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~--~---~v~~~~g~~~I~~~tvvWaaGv~a~ 263 (405)
T COG1252 209 PKLSKYAERALEKLGVEVLLGTPVTEVTP--D---GVTLKDGEEEIPADTVVWAAGVRAS 263 (405)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCceEEECC--C---cEEEccCCeeEecCEEEEcCCCcCC
Confidence 46667777788999999999999999963 2 2444 454 6999999998886543
No 307
>COG4529 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=0.015 Score=57.41 Aligned_cols=40 Identities=15% Similarity=0.281 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHhhhccC--C-CeEEEEcCCCCCCCccc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVS--G-KKVLHIDRNKYYGGESA 44 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~--G-~~V~vlE~~~~~GG~~~ 44 (441)
++|+|||+|.+|+.+|..|.+. . .+|.|+|+.+..|+...
T Consensus 2 ~~VAIIGgG~sGi~~A~~Ll~~~~~~~~Isi~e~~~~~G~Gia 44 (474)
T COG4529 2 FKVAIIGGGFSGIYMAAHLLKSPRPSGLISIFEPRPNFGQGIA 44 (474)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCCCCceEEeccccccCCCcc
Confidence 7899999999999999999765 2 23999999999997653
No 308
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=95.32 E-value=0.016 Score=57.57 Aligned_cols=38 Identities=18% Similarity=0.167 Sum_probs=34.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (441)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.++
T Consensus 145 ~~vvViGgG~ig~E~A~~l~~~g~~Vtlv~~~~~~l~~ 182 (396)
T PRK09754 145 RSVVIVGAGTIGLELAASATQRRCKVTVIELAATVMGR 182 (396)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCcchhh
Confidence 46999999999999999999999999999998877554
No 309
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=95.27 E-value=0.02 Score=50.14 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=27.8
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||+|.-|...|..++++|++|+++|.++
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~ 32 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSP 32 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECCh
Confidence 37899999999999999999999999999854
No 310
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=95.22 E-value=0.021 Score=48.24 Aligned_cols=31 Identities=19% Similarity=0.448 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 7 AIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 7 VvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|+|+|+|-.|+..|++|+++|++|.++-+..
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc
Confidence 6899999999999999999999999999743
No 311
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.90 E-value=0.024 Score=57.88 Aligned_cols=34 Identities=21% Similarity=0.279 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
-.|+|||+|.+|+.+|..|++.|++|+++|+++.
T Consensus 17 ~~v~viG~G~~G~~~A~~L~~~G~~V~~~d~~~~ 50 (480)
T PRK01438 17 LRVVVAGLGVSGFAAADALLELGARVTVVDDGDD 50 (480)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 3799999999999999999999999999998764
No 312
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=94.84 E-value=0.18 Score=49.50 Aligned_cols=62 Identities=13% Similarity=0.108 Sum_probs=49.6
Q ss_pred CCeeeecCC-cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe--CCeEEEcCEEEECCCC
Q psy2620 222 SPYLYPMYG-LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS--GTEIARCKQVYCDPSY 286 (441)
Q Consensus 222 ~~~~~~~gG-~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~--~g~~~~a~~vI~~~~~ 286 (441)
.+..||.-. +..+.++|.+.+++.|++|+++++|++| ++++ ..+.+ ++..++||.||.+++-
T Consensus 75 ~grvfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~~~-~~v~~~~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 75 SGRVFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QGGT-LRFETPDGQSTIEADAVVLALGG 139 (376)
T ss_pred CCEECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eCCc-EEEEECCCceEEecCEEEEcCCC
Confidence 356888655 8899999999999999999999999999 4443 55665 2357999999987653
No 313
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.78 E-value=0.033 Score=60.69 Aligned_cols=57 Identities=14% Similarity=-0.017 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHHcCcEEEcccceeEEEEeC-CEEEEEEe-CCeEEEcCEEEECCCCCcc
Q psy2620 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIEN-GKVVGVRS-GTEIARCKQVYCDPSYVQD 289 (441)
Q Consensus 233 ~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~-~~~~~v~~-~g~~~~a~~vI~~~~~~~~ 289 (441)
.+.+.+.+.++..|+++++++.|++|..++ +....|.. +|+++.+|.||.+++.-|+
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~~~~~~v~~~dG~~i~~D~Vv~A~G~rPn 246 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGVEARKTMRFADGSELEVDFIVFSTGIRPQ 246 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCCCceEEEEECCCCEEEcCEEEECCCcccC
Confidence 445667777889999999999999997532 33455554 7889999999998887653
No 314
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.75 E-value=0.033 Score=55.03 Aligned_cols=36 Identities=28% Similarity=0.266 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 142 ~~vvViGgG~~g~e~A~~L~~~g~~Vtlv~~~~~~l 177 (377)
T PRK04965 142 QRVLVVGGGLIGTELAMDLCRAGKAVTLVDNAASLL 177 (377)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEecCCccc
Confidence 479999999999999999999999999999988754
No 315
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.74 E-value=0.029 Score=57.01 Aligned_cols=34 Identities=29% Similarity=0.298 Sum_probs=31.6
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
.|.|||.|.+|+++|..|+++|++|++.|++...
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~~~D~~~~~ 35 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVVVSDRNDSP 35 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEEEECCCCch
Confidence 4899999999999999999999999999998765
No 316
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=94.67 E-value=0.035 Score=56.05 Aligned_cols=38 Identities=18% Similarity=0.154 Sum_probs=34.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (441)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++.+.
T Consensus 158 ~~vvIIGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~~ 195 (438)
T PRK07251 158 ERLGIIGGGNIGLEFAGLYNKLGSKVTVLDAASTILPR 195 (438)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCccCCC
Confidence 36999999999999999999999999999998876543
No 317
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.61 E-value=0.039 Score=52.36 Aligned_cols=37 Identities=22% Similarity=0.182 Sum_probs=33.3
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|+..-.|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 1 ~~~~~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~ 37 (292)
T PRK07530 1 MMAIKKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSA 37 (292)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 5555679999999999999999999999999999864
No 318
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=94.60 E-value=0.032 Score=56.86 Aligned_cols=36 Identities=17% Similarity=0.198 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++.
T Consensus 181 ~~vvIIGgG~~G~E~A~~l~~~g~~Vtli~~~~~il 216 (472)
T PRK05976 181 KSLVIVGGGVIGLEWASMLADFGVEVTVVEAADRIL 216 (472)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEecCccC
Confidence 479999999999999999999999999999988653
No 319
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.48 E-value=0.032 Score=53.41 Aligned_cols=32 Identities=19% Similarity=0.303 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
+|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 4 ~V~VIG~G~mG~~iA~~la~~G~~V~v~d~~~ 35 (308)
T PRK06129 4 SVAIIGAGLIGRAWAIVFARAGHEVRLWDADP 35 (308)
T ss_pred EEEEECccHHHHHHHHHHHHCCCeeEEEeCCH
Confidence 69999999999999999999999999999875
No 320
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=94.43 E-value=0.04 Score=52.08 Aligned_cols=38 Identities=18% Similarity=0.256 Sum_probs=32.9
Q ss_pred CCCc-ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 1 MDEE-YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 1 m~~~-~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
|+.. -.|.|||+|.-|...|..|+++|++|+++|+++.
T Consensus 1 ~~~~~~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~ 39 (286)
T PRK07819 1 MSDAIQRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEE 39 (286)
T ss_pred CCCCccEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHH
Confidence 4443 3689999999999999999999999999998754
No 321
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=94.39 E-value=0.04 Score=55.98 Aligned_cols=37 Identities=16% Similarity=0.207 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-+|+|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus 171 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l~ 207 (461)
T TIGR01350 171 ESLVIIGGGVIGIEFASIFASLGSKVTVIEMLDRILP 207 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCCCCC
Confidence 4799999999999999999999999999999887643
No 322
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=94.20 E-value=0.045 Score=55.66 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++..
T Consensus 167 ~~vvIIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 203 (463)
T TIGR02053 167 ESLAVIGGGAIGVELAQAFARLGSEVTILQRSDRLLP 203 (463)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcCCcCCC
Confidence 4799999999999999999999999999999876643
No 323
>PRK06370 mercuric reductase; Validated
Probab=94.11 E-value=0.053 Score=55.13 Aligned_cols=38 Identities=18% Similarity=0.227 Sum_probs=34.4
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (441)
-+|+|||+|..|+-+|..|++.|.+|+++|+.+++...
T Consensus 172 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l~~ 209 (463)
T PRK06370 172 EHLVIIGGGYIGLEFAQMFRRFGSEVTVIERGPRLLPR 209 (463)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCCCcc
Confidence 47999999999999999999999999999998876543
No 324
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=94.07 E-value=0.053 Score=55.04 Aligned_cols=36 Identities=19% Similarity=0.334 Sum_probs=33.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 171 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~ll 206 (458)
T PRK06912 171 SSLLIVGGGVIGCEFASIYSRLGTKVTIVEMAPQLL 206 (458)
T ss_pred CcEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 379999999999999999999999999999988764
No 325
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.04 E-value=0.054 Score=55.13 Aligned_cols=37 Identities=16% Similarity=0.178 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIIGgG~ig~E~A~~l~~~G~~Vtlie~~~~il~ 211 (466)
T PRK06115 175 KHLVVIGAGVIGLELGSVWRRLGAQVTVVEYLDRICP 211 (466)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCCCCC
Confidence 4799999999999999999999999999999887643
No 326
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=94.00 E-value=0.053 Score=55.28 Aligned_cols=37 Identities=14% Similarity=0.097 Sum_probs=33.8
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-+++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 175 ~~vvIiGgG~iG~E~A~~l~~~G~~Vtlv~~~~~il~ 211 (471)
T PRK06467 175 KRLLVMGGGIIGLEMGTVYHRLGSEVDVVEMFDQVIP 211 (471)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCEEEEecCCCCCC
Confidence 3799999999999999999999999999999887654
No 327
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.99 E-value=0.052 Score=54.94 Aligned_cols=36 Identities=19% Similarity=0.276 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.|+|||+|..|+-.|..|++.|.+|+++|+.+.+.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~g~~Vtli~~~~~il 202 (450)
T TIGR01421 167 KRVVIVGAGYIAVELAGVLHGLGSETHLVIRHERVL 202 (450)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCC
Confidence 379999999999999999999999999999988764
No 328
>PRK07846 mycothione reductase; Reviewed
Probab=93.93 E-value=0.058 Score=54.61 Aligned_cols=36 Identities=17% Similarity=0.290 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-+++|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 167 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~~~ll 202 (451)
T PRK07846 167 ESLVIVGGGFIAAEFAHVFSALGVRVTVVNRSGRLL 202 (451)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCccc
Confidence 479999999999999999999999999999988664
No 329
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.92 E-value=0.057 Score=54.88 Aligned_cols=37 Identities=14% Similarity=0.130 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-.|+|||+|..|+-+|..|++.|.+|+++|+++++..
T Consensus 173 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 209 (462)
T PRK06416 173 KSLVVIGGGYIGVEFASAYASLGAEVTIVEALPRILP 209 (462)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCCcCC
Confidence 3699999999999999999999999999999887643
No 330
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.90 E-value=0.063 Score=51.53 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||+|..|...|.+|+++|++|+++.|+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCC
Confidence 479999999999999999999999999998864
No 331
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=93.87 E-value=0.054 Score=49.25 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
+++|||+|-.|...|..|++.|++|+++|+++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~ 33 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDE 33 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCH
Confidence 58999999999999999999999999999865
No 332
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.79 E-value=0.062 Score=54.70 Aligned_cols=36 Identities=14% Similarity=0.062 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.|+|||+|..|+-+|..|++.|.+|+++|+.+++.
T Consensus 173 ~~vvVIGgG~ig~E~A~~l~~~G~~Vtlv~~~~~~l 208 (466)
T PRK07818 173 KSIVIAGAGAIGMEFAYVLKNYGVDVTIVEFLDRAL 208 (466)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEecCCCcC
Confidence 379999999999999999999999999999877654
No 333
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=93.74 E-value=0.062 Score=54.24 Aligned_cols=37 Identities=22% Similarity=0.179 Sum_probs=33.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 149 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~~l~~ 185 (438)
T PRK13512 149 DKALVVGAGYISLEVLENLYERGLHPTLIHRSDKINK 185 (438)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEecccccch
Confidence 3799999999999999999999999999999887643
No 334
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=93.72 E-value=0.069 Score=54.23 Aligned_cols=37 Identities=27% Similarity=0.211 Sum_probs=34.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++..
T Consensus 170 k~v~VIGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 206 (460)
T PRK06292 170 KSLAVIGGGVIGLELGQALSRLGVKVTVFERGDRILP 206 (460)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCcCc
Confidence 4799999999999999999999999999999987754
No 335
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=93.70 E-value=0.27 Score=51.31 Aligned_cols=55 Identities=13% Similarity=0.140 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe----CC--eEEEcCEEEECCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS----GT--EIARCKQVYCDPSY 286 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~----~g--~~~~a~~vI~~~~~ 286 (441)
..|.++|.+.+...|++|+.++.|+++..++|+|+||.. +| ..+.|+.||++++-
T Consensus 119 ~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~g~v~Ga~~~~~~~g~~~~i~AkaVILATGG 179 (565)
T TIGR01816 119 HAILHTLYQQNLKADTSFFNEYFALDLLMEDGECRGVIAYCLETGEIHRFRAKAVVLATGG 179 (565)
T ss_pred HHHHHHHHHHHHhCCCEEEeccEEEEEEeeCCEEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence 468899999898899999999999999988899999874 34 46899999987664
No 336
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=93.66 E-value=0.063 Score=52.16 Aligned_cols=31 Identities=39% Similarity=0.601 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
.|.|||+|..|...|..|+++|++|++++++
T Consensus 4 kI~IiG~G~mG~~~A~~L~~~G~~V~~~~r~ 34 (341)
T PRK08229 4 RICVLGAGSIGCYLGGRLAAAGADVTLIGRA 34 (341)
T ss_pred eEEEECCCHHHHHHHHHHHhcCCcEEEEecH
Confidence 5999999999999999999999999999985
No 337
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.66 E-value=0.068 Score=53.74 Aligned_cols=35 Identities=23% Similarity=0.359 Sum_probs=32.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
-.|+|||+|..|+-+|..|++.|.+|+++++.+.+
T Consensus 138 ~~vvViGgG~~g~e~A~~l~~~g~~Vtli~~~~~~ 172 (427)
T TIGR03385 138 ENVVIIGGGYIGIEMAEALRERGKNVTLIHRSERI 172 (427)
T ss_pred CeEEEECCCHHHHHHHHHHHhCCCcEEEEECCccc
Confidence 47999999999999999999999999999998766
No 338
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.63 E-value=0.065 Score=50.73 Aligned_cols=33 Identities=18% Similarity=0.172 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 469999999999999999999999999999864
No 339
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.61 E-value=0.079 Score=53.65 Aligned_cols=34 Identities=26% Similarity=0.436 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
...|+|+|+|..|+.+|..|++.|++|++.|++.
T Consensus 5 ~k~v~iiG~g~~G~~~A~~l~~~G~~V~~~d~~~ 38 (450)
T PRK14106 5 GKKVLVVGAGVSGLALAKFLKKLGAKVILTDEKE 38 (450)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 4679999999999999999999999999999875
No 340
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.58 E-value=0.071 Score=54.16 Aligned_cols=37 Identities=22% Similarity=0.366 Sum_probs=33.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-.|+|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus 176 ~~v~IiGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 212 (461)
T PRK05249 176 RSLIIYGAGVIGCEYASIFAALGVKVTLINTRDRLLS 212 (461)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCcCC
Confidence 4699999999999999999999999999999887644
No 341
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.55 E-value=0.06 Score=51.03 Aligned_cols=32 Identities=22% Similarity=0.353 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~ 34 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQ 34 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCH
Confidence 58999999999999999999999999999874
No 342
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.54 E-value=0.067 Score=51.12 Aligned_cols=32 Identities=25% Similarity=0.250 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
.+|.|||+|-.|...|++|+++|.+|+++.|.
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~ 34 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRD 34 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEec
Confidence 36999999999999999999999999999995
No 343
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=93.41 E-value=0.08 Score=54.02 Aligned_cols=37 Identities=16% Similarity=0.183 Sum_probs=33.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-.|+|||+|..|+-+|..|++.|.+|+++|+++.+..
T Consensus 184 ~~vvVvGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l~ 220 (475)
T PRK06327 184 KKLAVIGAGVIGLELGSVWRRLGAEVTILEALPAFLA 220 (475)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCeEEEEeCCCccCC
Confidence 4799999999999999999999999999999887643
No 344
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=93.35 E-value=0.078 Score=53.00 Aligned_cols=36 Identities=22% Similarity=0.255 Sum_probs=32.2
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|. ...|.|||.|..|+..|..|+++|++|+++|++.
T Consensus 1 m~-~~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~ 36 (415)
T PRK11064 1 MS-FETISVIGLGYIGLPTAAAFASRQKQVIGVDINQ 36 (415)
T ss_pred CC-ccEEEEECcchhhHHHHHHHHhCCCEEEEEeCCH
Confidence 44 3579999999999999999999999999999864
No 345
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=93.33 E-value=0.2 Score=44.37 Aligned_cols=55 Identities=11% Similarity=0.125 Sum_probs=40.3
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeC-CeEEEcCEEEECCCCC
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSG-TEIARCKQVYCDPSYV 287 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~-g~~~~a~~vI~~~~~~ 287 (441)
.++.+-|.+.++.+|..++++++|+++..++++ +.|++. +++++|++||.+.+.+
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~~-w~v~~~~~~~~~a~~VVlAtG~~ 137 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDGDG-WTVTTRDGRTIRADRVVLATGHY 137 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEETTT-EEEEETTS-EEEEEEEEE---SS
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEeccE-EEEEEEecceeeeeeEEEeeecc
Confidence 456677777788889999999999999988776 677774 5699999999998864
No 346
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.31 E-value=0.08 Score=50.74 Aligned_cols=33 Identities=15% Similarity=0.114 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||+|.-|...|..++.+|++|+++|.++
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 458999999999999999999999999999865
No 347
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=93.28 E-value=0.08 Score=50.43 Aligned_cols=31 Identities=23% Similarity=0.422 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
.|.|||+|..|...|..|+++|++|++++++
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECC
Confidence 4899999999999999999999999999984
No 348
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=93.27 E-value=0.092 Score=50.34 Aligned_cols=37 Identities=19% Similarity=0.335 Sum_probs=32.8
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|..--.|.|||+|.-|...|..|+++|++|+++|++.
T Consensus 1 ~~~~~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~ 37 (311)
T PRK06130 1 MNPIQNLAIIGAGTMGSGIAALFARKGLQVVLIDVME 37 (311)
T ss_pred CCCccEEEEECCCHHHHHHHHHHHhCCCeEEEEECCH
Confidence 5555579999999999999999999999999999754
No 349
>COG1004 Ugd Predicted UDP-glucose 6-dehydrogenase [Cell envelope biogenesis, outer membrane]
Probab=93.22 E-value=0.079 Score=51.22 Aligned_cols=32 Identities=25% Similarity=0.428 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.+.|||+|..||+.|..||+.|++|+.+|...
T Consensus 2 kI~viGtGYVGLv~g~~lA~~GHeVv~vDid~ 33 (414)
T COG1004 2 KITVIGTGYVGLVTGACLAELGHEVVCVDIDE 33 (414)
T ss_pred ceEEECCchHHHHHHHHHHHcCCeEEEEeCCH
Confidence 58899999999999999999999999999753
No 350
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=93.22 E-value=0.091 Score=52.84 Aligned_cols=36 Identities=17% Similarity=0.292 Sum_probs=33.4
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
.++|||||..|+=-|..+++-|.+|+|+|+++++-.
T Consensus 175 ~lvIiGgG~IGlE~a~~~~~LG~~VTiie~~~~iLp 210 (454)
T COG1249 175 SLVIVGGGYIGLEFASVFAALGSKVTVVERGDRILP 210 (454)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCcEEEEecCCCCCC
Confidence 589999999999999999999999999999987654
No 351
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=93.20 E-value=0.09 Score=53.28 Aligned_cols=36 Identities=17% Similarity=0.295 Sum_probs=33.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.++|||+|..|+-.|..|++.|.+|+++|+.+++.
T Consensus 170 k~vvVIGgG~ig~E~A~~l~~~G~~Vtli~~~~~ll 205 (452)
T TIGR03452 170 ESLVIVGGGYIAAEFAHVFSALGTRVTIVNRSTKLL 205 (452)
T ss_pred CcEEEECCCHHHHHHHHHHHhCCCcEEEEEccCccc
Confidence 479999999999999999999999999999988764
No 352
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=93.13 E-value=0.086 Score=57.23 Aligned_cols=36 Identities=25% Similarity=0.093 Sum_probs=33.1
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.|+|||+|..|+-+|..|++.|.+|+|+|+.+.+-
T Consensus 141 k~vvVVGgG~~GlE~A~~L~~~G~~Vtvv~~~~~ll 176 (785)
T TIGR02374 141 KKAAVIGGGLLGLEAAVGLQNLGMDVSVIHHAPGLM 176 (785)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEccCCchh
Confidence 369999999999999999999999999999988764
No 353
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.00 E-value=0.12 Score=50.02 Aligned_cols=37 Identities=24% Similarity=0.245 Sum_probs=32.7
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|.....|.|||+|.-|...|..|+++|++|++++++.
T Consensus 1 ~~~~m~I~iIG~G~mG~~ia~~L~~~G~~V~~~~r~~ 37 (328)
T PRK14618 1 MHHGMRVAVLGAGAWGTALAVLAASKGVPVRLWARRP 37 (328)
T ss_pred CCCCCeEEEECcCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 4445579999999999999999999999999999853
No 354
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=92.99 E-value=0.096 Score=54.04 Aligned_cols=35 Identities=17% Similarity=0.050 Sum_probs=32.1
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
-+|+|||||..|+-+|..|++.|.+|+++|+.+.+
T Consensus 353 k~VvViGgG~~g~E~A~~L~~~g~~Vtli~~~~~l 387 (515)
T TIGR03140 353 KDVAVIGGGNSGIEAAIDLAGIVRHVTVLEFADEL 387 (515)
T ss_pred CEEEEECCcHHHHHHHHHHHhcCcEEEEEEeCCcC
Confidence 37999999999999999999999999999987655
No 355
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=92.95 E-value=0.12 Score=49.05 Aligned_cols=37 Identities=22% Similarity=0.289 Sum_probs=33.2
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|+.--.|.|||+|.-|...|..|+++|++|.++|++.
T Consensus 1 ~~~~~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~ 37 (295)
T PLN02545 1 MAEIKKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDP 37 (295)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 5655679999999999999999999999999999864
No 356
>PRK04148 hypothetical protein; Provisional
Probab=92.94 E-value=0.078 Score=43.56 Aligned_cols=33 Identities=30% Similarity=0.289 Sum_probs=29.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
-.+++||.| .|...|..|++.|++|+.+|-++.
T Consensus 18 ~kileIG~G-fG~~vA~~L~~~G~~ViaIDi~~~ 50 (134)
T PRK04148 18 KKIVELGIG-FYFKVAKKLKESGFDVIVIDINEK 50 (134)
T ss_pred CEEEEEEec-CCHHHHHHHHHCCCEEEEEECCHH
Confidence 359999999 998889999999999999998765
No 357
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=92.85 E-value=0.083 Score=49.24 Aligned_cols=43 Identities=23% Similarity=0.364 Sum_probs=36.9
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCC--------CCCCCccccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN--------KYYGGESASI 46 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~--------~~~GG~~~t~ 46 (441)
.-+|+|||+|..|.-||..+.--|.+|+++|.| +..||+..+.
T Consensus 168 ~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~~rv~~~ 218 (371)
T COG0686 168 PAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFGGRVHTL 218 (371)
T ss_pred CccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhCceeEEE
Confidence 358999999999999999999999999999998 5567775543
No 358
>KOG3923|consensus
Probab=92.84 E-value=0.082 Score=48.96 Aligned_cols=32 Identities=19% Similarity=0.052 Sum_probs=25.9
Q ss_pred cccEEEECCChhHHHHHhhhccCC-------CeEEEEcC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSG-------KKVLHIDR 35 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G-------~~V~vlE~ 35 (441)
..+++|||+|+.||++|..+.+.+ .+|.|++-
T Consensus 3 ~~~iaViGaGVIGlsTA~~i~~~~~~~~ip~~~vtv~~D 41 (342)
T KOG3923|consen 3 TPRIAVIGAGVIGLSTALCILELYHSVLIPVAKVTVISD 41 (342)
T ss_pred CccEEEEcCCeechhHHHHHHHhhhhccCCcceEEEecC
Confidence 468999999999999998777744 46777764
No 359
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.84 E-value=0.12 Score=52.52 Aligned_cols=37 Identities=19% Similarity=0.228 Sum_probs=33.7
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCc
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~ 42 (441)
.++|||+|..|+-.|..|++.|.+|+++|+.+++...
T Consensus 179 ~vvVIGgG~ig~E~A~~l~~~g~~Vtli~~~~~~l~~ 215 (466)
T PRK07845 179 HLIVVGSGVTGAEFASAYTELGVKVTLVSSRDRVLPG 215 (466)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEEcCCcCCCC
Confidence 6899999999999999999999999999998876544
No 360
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=92.69 E-value=0.1 Score=49.73 Aligned_cols=30 Identities=27% Similarity=0.397 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDR 35 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~ 35 (441)
.|.|||+|..|...|..|+++|++|+++.+
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec
Confidence 489999999999999999999999999987
No 361
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=92.66 E-value=0.12 Score=52.36 Aligned_cols=36 Identities=22% Similarity=0.277 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.++|||+|..|+-+|..|++.|.+|+++|+.+.+.
T Consensus 167 ~~vvVIGgG~~g~E~A~~l~~~G~~Vtli~~~~~~l 202 (446)
T TIGR01424 167 KSILILGGGYIAVEFAGIWRGLGVQVTLIYRGELIL 202 (446)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCeEEEEEeCCCCC
Confidence 368999999999999999999999999999987653
No 362
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=92.62 E-value=0.12 Score=52.29 Aligned_cols=36 Identities=17% Similarity=0.140 Sum_probs=32.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.|+|||+|..|+-+|..|++.|.+|+++++.+++.
T Consensus 150 ~~vvVvGgG~~g~e~A~~l~~~g~~Vtli~~~~~~l 185 (444)
T PRK09564 150 KNIVIIGAGFIGLEAVEAAKHLGKNVRIIQLEDRIL 185 (444)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCcEEEEeCCcccC
Confidence 479999999999999999999999999999877653
No 363
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=92.59 E-value=0.12 Score=54.54 Aligned_cols=36 Identities=11% Similarity=0.144 Sum_probs=33.6
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
.|+|||+|..|+-.|..|++.|.+|+++|+.+++..
T Consensus 314 ~VvIVGgG~iGvE~A~~l~~~G~eVTLIe~~~~ll~ 349 (659)
T PTZ00153 314 YMGIVGMGIIGLEFMDIYTALGSEVVSFEYSPQLLP 349 (659)
T ss_pred ceEEECCCHHHHHHHHHHHhCCCeEEEEeccCcccc
Confidence 699999999999999999999999999999988654
No 364
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.57 E-value=0.11 Score=52.46 Aligned_cols=34 Identities=18% Similarity=0.140 Sum_probs=31.4
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
-.|+|||+|..|+-+|..|++.|.+|+++++++.
T Consensus 273 k~VvVIGgG~~a~d~A~~l~~~G~~Vtlv~~~~~ 306 (449)
T TIGR01316 273 KSVVVIGGGNTAVDSARTALRLGAEVHCLYRRTR 306 (449)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 3799999999999999999999999999998764
No 365
>PTZ00058 glutathione reductase; Provisional
Probab=92.48 E-value=0.12 Score=53.78 Aligned_cols=36 Identities=14% Similarity=0.109 Sum_probs=33.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.|+|||+|..|+-.|..|++.|.+|+++|+++++.
T Consensus 238 k~VvIIGgG~iGlE~A~~l~~~G~~Vtli~~~~~il 273 (561)
T PTZ00058 238 KRIGIAGSGYIAVELINVVNRLGAESYIFARGNRLL 273 (561)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCcEEEEEeccccc
Confidence 479999999999999999999999999999988764
No 366
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=92.36 E-value=0.16 Score=43.90 Aligned_cols=33 Identities=18% Similarity=0.141 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|+|+|+|..|..||..|..-|.+|+++|.+.
T Consensus 21 ~~vvv~G~G~vg~gA~~~~~~lGa~v~~~d~~~ 53 (168)
T PF01262_consen 21 AKVVVTGAGRVGQGAAEIAKGLGAEVVVPDERP 53 (168)
T ss_dssp -EEEEESTSHHHHHHHHHHHHTT-EEEEEESSH
T ss_pred eEEEEECCCHHHHHHHHHHhHCCCEEEeccCCH
Confidence 579999999999999999999999999999743
No 367
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=92.35 E-value=0.14 Score=48.92 Aligned_cols=32 Identities=22% Similarity=0.412 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHhhhccCC--CeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSG--KKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G--~~V~vlE~~~ 37 (441)
.|.|||+|..|+++|+.|+++| ..|.++|++.
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~~ 35 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDINK 35 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECCc
Confidence 5899999999999999999999 5899999864
No 368
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=92.35 E-value=0.12 Score=56.24 Aligned_cols=35 Identities=23% Similarity=0.195 Sum_probs=32.6
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
.++|||+|..|+-+|..|++.|.+|+|+|+.+++-
T Consensus 147 ~vvVIGgG~iGlE~A~~L~~~G~~VtvVe~~~~ll 181 (847)
T PRK14989 147 RGAVVGGGLLGLEAAGALKNLGVETHVIEFAPMLM 181 (847)
T ss_pred eEEEECCCHHHHHHHHHHHHcCCeEEEEeccccch
Confidence 68999999999999999999999999999988753
No 369
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=92.34 E-value=0.12 Score=48.98 Aligned_cols=33 Identities=18% Similarity=0.226 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCH
Confidence 369999999999999999999999999999865
No 370
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=92.34 E-value=0.18 Score=43.41 Aligned_cols=33 Identities=15% Similarity=0.102 Sum_probs=29.6
Q ss_pred cccEEEECCCh-hHHHHHhhhccCCCeEEEEcCC
Q psy2620 4 EYDAIVLGTGL-KECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~-~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
...|+|||+|- .|..+|.+|.+.|.+|.++.++
T Consensus 44 gk~vlViG~G~~~G~~~a~~L~~~g~~V~v~~r~ 77 (168)
T cd01080 44 GKKVVVVGRSNIVGKPLAALLLNRNATVTVCHSK 77 (168)
T ss_pred CCEEEEECCcHHHHHHHHHHHhhCCCEEEEEECC
Confidence 46899999996 6999999999999999999975
No 371
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=92.29 E-value=0.13 Score=48.53 Aligned_cols=33 Identities=21% Similarity=0.284 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||+|..|...|..|+++|++|+++|.++
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceEEEeCCH
Confidence 369999999999999999999999999999764
No 372
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=92.27 E-value=0.14 Score=53.41 Aligned_cols=35 Identities=26% Similarity=0.323 Sum_probs=32.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
-.|+|||||..|+-+|..|++.|.+|+++++.+..
T Consensus 144 ~~VvVIGgG~~g~E~A~~L~~~g~~Vtli~~~~~~ 178 (555)
T TIGR03143 144 MDVFVIGGGFAAAEEAVFLTRYASKVTVIVREPDF 178 (555)
T ss_pred CEEEEECCCHHHHHHHHHHHccCCEEEEEEeCCcc
Confidence 47999999999999999999999999999998764
No 373
>PRK10262 thioredoxin reductase; Provisional
Probab=92.14 E-value=0.15 Score=49.09 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=32.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
-.|+|||+|.+|+-+|..|++.|.+|+++++.+..
T Consensus 147 ~~vvVvGgG~~g~e~A~~l~~~~~~Vtlv~~~~~~ 181 (321)
T PRK10262 147 QKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGF 181 (321)
T ss_pred CEEEEECCCHHHHHHHHHHHhhCCEEEEEEECCcc
Confidence 37999999999999999999999999999997754
No 374
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=92.07 E-value=0.14 Score=52.78 Aligned_cols=35 Identities=17% Similarity=0.007 Sum_probs=32.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
-+|+|||||.+|+-+|..|+..|.+|+++++.+.+
T Consensus 352 k~VvVVGgG~~g~e~A~~L~~~~~~Vtlv~~~~~l 386 (517)
T PRK15317 352 KRVAVIGGGNSGVEAAIDLAGIVKHVTVLEFAPEL 386 (517)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCEEEEEEECccc
Confidence 37999999999999999999999999999987765
No 375
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=92.03 E-value=0.17 Score=49.46 Aligned_cols=32 Identities=25% Similarity=0.411 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHhhhccCC-CeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSG-KKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~ 36 (441)
-+|+|||+|..|.++|..|++.| .+|++.+|.
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCC
Confidence 37999999999999999999999 999999986
No 376
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.99 E-value=0.17 Score=51.12 Aligned_cols=36 Identities=19% Similarity=0.237 Sum_probs=32.8
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~G 40 (441)
-.|+|||+|..|+-.|..|++.|.+|+++|+++.+.
T Consensus 159 ~~v~ViGgG~~g~E~A~~l~~~g~~Vtli~~~~~~l 194 (441)
T PRK08010 159 GHLGILGGGYIGVEFASMFANFGSKVTILEAASLFL 194 (441)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCeEEEEecCCCCC
Confidence 379999999999999999999999999999987654
No 377
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=91.95 E-value=0.18 Score=39.58 Aligned_cols=34 Identities=24% Similarity=0.246 Sum_probs=30.6
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
...|+|||+|-.|..-+..|.+.|.+|+|+-...
T Consensus 7 ~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~~ 40 (103)
T PF13241_consen 7 GKRVLVVGGGPVAARKARLLLEAGAKVTVISPEI 40 (103)
T ss_dssp T-EEEEEEESHHHHHHHHHHCCCTBEEEEEESSE
T ss_pred CCEEEEECCCHHHHHHHHHHHhCCCEEEEECCch
Confidence 4579999999999999999999999999998764
No 378
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=91.95 E-value=0.18 Score=48.60 Aligned_cols=32 Identities=28% Similarity=0.321 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||+|.-|...|..|+++|++|.+++++.
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~ 34 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDP 34 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence 59999999999999999999999999999853
No 379
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=91.91 E-value=0.14 Score=51.21 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=30.5
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
.|.|||.|..|+..|..|+++|++|++++++..
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~~V~~~d~~~~ 34 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGHEVTGVDIDQE 34 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCCeEEEEECCHH
Confidence 489999999999999999999999999998653
No 380
>PRK12831 putative oxidoreductase; Provisional
Probab=91.83 E-value=0.16 Score=51.66 Aligned_cols=34 Identities=18% Similarity=0.060 Sum_probs=31.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
-.|+|||+|.+|+-+|..|++.|.+|+++++++.
T Consensus 282 k~VvVIGgG~va~d~A~~l~r~Ga~Vtlv~r~~~ 315 (464)
T PRK12831 282 KKVAVVGGGNVAMDAARTALRLGAEVHIVYRRSE 315 (464)
T ss_pred CeEEEECCcHHHHHHHHHHHHcCCEEEEEeecCc
Confidence 3799999999999999999999999999998654
No 381
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=91.77 E-value=0.2 Score=44.81 Aligned_cols=33 Identities=18% Similarity=0.192 Sum_probs=30.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.|+|||||-.|...+..|.+.|.+|+|+....
T Consensus 10 k~vlVvGgG~va~rk~~~Ll~~ga~VtVvsp~~ 42 (205)
T TIGR01470 10 RAVLVVGGGDVALRKARLLLKAGAQLRVIAEEL 42 (205)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 479999999999999999999999999998753
No 382
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=91.56 E-value=0.16 Score=49.63 Aligned_cols=33 Identities=21% Similarity=0.241 Sum_probs=29.9
Q ss_pred cEEEECCChhHHHHHhhhccCCCe-EEEEcCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKK-VLHIDRNKY 38 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~-V~vlE~~~~ 38 (441)
.|+|||+|..|+-+|..|++.|.+ |+|+++.+.
T Consensus 174 ~vvViG~G~~g~e~A~~l~~~g~~~Vtvi~~~~~ 207 (352)
T PRK12770 174 KVVVVGAGLTAVDAALEAVLLGAEKVYLAYRRTI 207 (352)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCeEEEEeecch
Confidence 699999999999999999999986 999998654
No 383
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=91.50 E-value=0.74 Score=48.02 Aligned_cols=41 Identities=24% Similarity=0.536 Sum_probs=38.3
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
+++||||||+|.+|++||..++++|.+|+|||+++.+||.+
T Consensus 6 ~~~DvvVvG~G~aG~~aA~~aa~~G~~v~llEk~~~~gG~~ 46 (557)
T PRK07843 6 QEYDVVVVGSGAAGMVAALTAAHRGLSTVVVEKAPHYGGST 46 (557)
T ss_pred CcCCEEEECcCHHHHHHHHHHHHCCCCEEEEeCCCCCCccc
Confidence 46899999999999999999999999999999999988864
No 384
>PRK13748 putative mercuric reductase; Provisional
Probab=91.48 E-value=0.2 Score=52.28 Aligned_cols=33 Identities=21% Similarity=0.264 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.++|||+|..|+-.|..|++.|.+|++++++.
T Consensus 271 ~~vvViGgG~ig~E~A~~l~~~g~~Vtli~~~~ 303 (561)
T PRK13748 271 ERLAVIGSSVVALELAQAFARLGSKVTILARST 303 (561)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEecCc
Confidence 369999999999999999999999999999854
No 385
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.43 E-value=0.23 Score=48.22 Aligned_cols=39 Identities=28% Similarity=0.385 Sum_probs=34.8
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCC-CeEEEEcCCCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRNKYY 39 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~~~ 39 (441)
|++.+|+|.||-|+.-|+.|+.|...+ .+++.|||.+..
T Consensus 2 ~~~~~DliGIG~GPfNL~LA~ll~e~~~~~~lFLerkp~F 41 (436)
T COG3486 2 MAEVLDLIGIGIGPFNLSLAALLEEHSGLKSLFLERKPDF 41 (436)
T ss_pred CCcceeeEEEccCchHHHHHHHhccccCcceEEEecCCCC
Confidence 667899999999999999999999876 889999998653
No 386
>PLN02546 glutathione reductase
Probab=91.32 E-value=0.2 Score=52.02 Aligned_cols=37 Identities=16% Similarity=0.117 Sum_probs=33.4
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG 41 (441)
-+|+|||+|..|+-.|..|++.|.+|+++|+.+.+..
T Consensus 253 k~V~VIGgG~iGvE~A~~L~~~g~~Vtlv~~~~~il~ 289 (558)
T PLN02546 253 EKIAIVGGGYIALEFAGIFNGLKSDVHVFIRQKKVLR 289 (558)
T ss_pred CeEEEECCCHHHHHHHHHHHhcCCeEEEEEecccccc
Confidence 4799999999999999999999999999999877543
No 387
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=91.31 E-value=0.22 Score=47.51 Aligned_cols=32 Identities=16% Similarity=0.182 Sum_probs=29.1
Q ss_pred cEEEECCChhHHHHHhhhccCCC-eEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGK-KVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~~ 37 (441)
.|.|||+|..|+.+|+.|+..|+ +|+++|.+.
T Consensus 3 KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi~~ 35 (305)
T TIGR01763 3 KISVIGAGFVGATTAFRLAEKELADLVLLDVVE 35 (305)
T ss_pred EEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence 58999999999999999999887 899999843
No 388
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=91.31 E-value=0.25 Score=43.95 Aligned_cols=33 Identities=18% Similarity=0.203 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHhhhccCCC-eEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~ 36 (441)
...|+|||+|-.|+.+|..|+++|. +++++|..
T Consensus 21 ~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 21 QATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4579999999999999999999997 69999974
No 389
>PF13478 XdhC_C: XdhC Rossmann domain; PDB: 3ON5_A 2WE8_B 2WE7_A.
Probab=91.28 E-value=0.21 Score=41.47 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=27.3
Q ss_pred EEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 7 AIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 7 VvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
++|+|+|+.+...|..++.-|++|+|+|-++
T Consensus 1 L~I~GaG~va~al~~la~~lg~~v~v~d~r~ 31 (136)
T PF13478_consen 1 LVIFGAGHVARALARLAALLGFRVTVVDPRP 31 (136)
T ss_dssp EEEES-STCHHHHHHHHHHCTEEEEEEES-C
T ss_pred CEEEeCcHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 5899999999999999999999999999874
No 390
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=91.17 E-value=0.3 Score=41.67 Aligned_cols=30 Identities=17% Similarity=0.161 Sum_probs=28.2
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEc
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHID 34 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE 34 (441)
-.|+|||||-.|..-|..|.++|.+|+|+.
T Consensus 14 ~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 14 KVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 479999999999999999999999999995
No 391
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=91.17 E-value=0.28 Score=39.18 Aligned_cols=31 Identities=26% Similarity=0.413 Sum_probs=27.9
Q ss_pred EEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 7 AIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 7 VvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|||+|.|-.|...+..|.+.+.+|+++|++.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vvvid~d~ 31 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVVVIDRDP 31 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEEEEESSH
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEEEEECCc
Confidence 7999999999999999999888999999865
No 392
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=91.04 E-value=0.23 Score=48.80 Aligned_cols=33 Identities=24% Similarity=0.250 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.+|+|||+|..|+.+|..|.+.|.+|++++++.
T Consensus 168 ~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~ 200 (370)
T TIGR00518 168 GDVTIIGGGVVGTNAAKMANGLGATVTILDINI 200 (370)
T ss_pred ceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCH
Confidence 579999999999999999999999999999863
No 393
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=91.03 E-value=0.29 Score=43.65 Aligned_cols=33 Identities=15% Similarity=0.172 Sum_probs=29.9
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
...|+|||||-.|...|..|.++|.+|+|+++.
T Consensus 10 ~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs~~ 42 (202)
T PRK06718 10 NKRVVIVGGGKVAGRRAITLLKYGAHIVVISPE 42 (202)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCeEEEEcCC
Confidence 357999999999999999999999999999763
No 394
>PRK14727 putative mercuric reductase; Provisional
Probab=90.86 E-value=0.27 Score=50.26 Aligned_cols=33 Identities=15% Similarity=0.262 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.|+|||+|..|+-.|..|++.|.+|+++++..
T Consensus 189 k~vvVIGgG~iG~E~A~~l~~~G~~Vtlv~~~~ 221 (479)
T PRK14727 189 ASLTVIGSSVVAAEIAQAYARLGSRVTILARST 221 (479)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCEEEEEEcCC
Confidence 369999999999999999999999999999753
No 395
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=90.80 E-value=0.24 Score=47.80 Aligned_cols=32 Identities=25% Similarity=0.190 Sum_probs=29.6
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||+|--|.+.|..|+++|++|.++.++.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCH
Confidence 48999999999999999999999999999853
No 396
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=90.64 E-value=0.27 Score=50.41 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGIDVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 469999999999999999999999999999863
No 397
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=90.61 E-value=0.34 Score=40.14 Aligned_cols=33 Identities=21% Similarity=0.377 Sum_probs=29.5
Q ss_pred cccEEEECCChhHHHHHhhhccCCCe-EEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKK-VLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~-V~vlE~~ 36 (441)
...|+|||+|-+|-.++.+|+..|.+ |+|+-|+
T Consensus 12 ~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt 45 (135)
T PF01488_consen 12 GKRVLVIGAGGAARAVAAALAALGAKEITIVNRT 45 (135)
T ss_dssp TSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESS
T ss_pred CCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECC
Confidence 35799999999999999999999966 9999875
No 398
>PTZ00052 thioredoxin reductase; Provisional
Probab=90.53 E-value=0.26 Score=50.58 Aligned_cols=32 Identities=19% Similarity=0.210 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
-+++|||+|..|+-.|..|++.|.+|+++++.
T Consensus 183 ~~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 214 (499)
T PTZ00052 183 GKTLIVGASYIGLETAGFLNELGFDVTVAVRS 214 (499)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCcEEEEEcC
Confidence 37999999999999999999999999999974
No 399
>PLN02353 probable UDP-glucose 6-dehydrogenase
Probab=90.52 E-value=0.26 Score=49.93 Aligned_cols=32 Identities=13% Similarity=0.192 Sum_probs=28.6
Q ss_pred cEEEECCChhHHHHHhhhccCC--CeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSG--KKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G--~~V~vlE~~~ 37 (441)
.|.|||+|..|+.+|..||++| ++|+.+|.+.
T Consensus 3 ~I~ViG~GyvGl~~A~~lA~~g~g~~V~gvD~~~ 36 (473)
T PLN02353 3 KICCIGAGYVGGPTMAVIALKCPDIEVVVVDISV 36 (473)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCeEEEEECCH
Confidence 4999999999999999999884 8899999753
No 400
>KOG2304|consensus
Probab=90.47 E-value=0.26 Score=43.84 Aligned_cols=38 Identities=24% Similarity=0.325 Sum_probs=33.3
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
|.+...|.|||+|.-|.-.|-..+.+|++|.+++++..
T Consensus 8 ~~~~~~V~ivGaG~MGSGIAQv~a~sg~~V~l~d~~~~ 45 (298)
T KOG2304|consen 8 MAEIKNVAIVGAGQMGSGIAQVAATSGLNVWLVDANED 45 (298)
T ss_pred cccccceEEEcccccchhHHHHHHhcCCceEEecCCHH
Confidence 34456899999999999999999999999999998753
No 401
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=90.46 E-value=0.28 Score=50.19 Aligned_cols=31 Identities=23% Similarity=0.312 Sum_probs=29.4
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
.++|||+|..|+-+|..|++.|.+|+++++.
T Consensus 182 ~vvIIGgG~iG~E~A~~l~~~G~~Vtli~~~ 212 (484)
T TIGR01438 182 KTLVVGASYVALECAGFLAGIGLDVTVMVRS 212 (484)
T ss_pred CEEEECCCHHHHHHHHHHHHhCCcEEEEEec
Confidence 6899999999999999999999999999974
No 402
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=90.40 E-value=0.32 Score=45.30 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=30.8
Q ss_pred cccEEEECCChhHHHHHhhhccCC-CeEEEEcCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRNK 37 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~ 37 (441)
...|+|||.|-.|+.+|-.|+++| .+++++|...
T Consensus 30 ~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~ 64 (268)
T PRK15116 30 DAHICVVGIGGVGSWAAEALARTGIGAITLIDMDD 64 (268)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCE
Confidence 468999999999999999999999 8999999644
No 403
>PRK15057 UDP-glucose 6-dehydrogenase; Provisional
Probab=90.09 E-value=0.29 Score=48.41 Aligned_cols=31 Identities=16% Similarity=0.177 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||.|..|+..|..|+. |++|+++|.+.
T Consensus 2 kI~VIGlGyvGl~~A~~lA~-G~~VigvD~d~ 32 (388)
T PRK15057 2 KITISGTGYVGLSNGLLIAQ-NHEVVALDILP 32 (388)
T ss_pred EEEEECCCHHHHHHHHHHHh-CCcEEEEECCH
Confidence 48999999999999988885 99999999864
No 404
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=90.02 E-value=0.4 Score=46.07 Aligned_cols=37 Identities=14% Similarity=0.208 Sum_probs=32.2
Q ss_pred CcccEEEECCChhHHHHHhhhccCCC-eEEEEcCCCCC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRNKYY 39 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~~~~ 39 (441)
....|+|||+|..|..+|..|+..|+ +|.++|.++..
T Consensus 5 ~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~~~ 42 (321)
T PTZ00082 5 KRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVKNI 42 (321)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCCch
Confidence 34579999999999999999999996 89999987653
No 405
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=89.83 E-value=0.39 Score=45.99 Aligned_cols=33 Identities=27% Similarity=0.411 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||+|.-|...|..|+++|++|.+..++.
T Consensus 5 m~I~iiG~G~~G~~lA~~l~~~G~~V~~~~r~~ 37 (308)
T PRK14619 5 KTIAILGAGAWGSTLAGLASANGHRVRVWSRRS 37 (308)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence 469999999999999999999999999999865
No 406
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=89.71 E-value=0.33 Score=49.29 Aligned_cols=34 Identities=18% Similarity=0.132 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCC-eEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGK-KVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~~~ 38 (441)
-.|+|||+|..|+-+|..|++.|. +|+++++++.
T Consensus 274 ~~VvViGgG~~g~e~A~~l~~~G~~~Vtlv~~~~~ 308 (457)
T PRK11749 274 KRVVVIGGGNTAMDAARTAKRLGAESVTIVYRRGR 308 (457)
T ss_pred CeEEEECCCHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 479999999999999999999997 8999998653
No 407
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.49 E-value=0.36 Score=49.01 Aligned_cols=32 Identities=28% Similarity=0.403 Sum_probs=30.4
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|+|.|.+|+++|..|.+.|++|.+.|+++
T Consensus 16 ~i~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 47 (458)
T PRK01710 16 KVAVVGIGVSNIPLIKFLVKLGAKVTAFDKKS 47 (458)
T ss_pred eEEEEcccHHHHHHHHHHHHCCCEEEEECCCC
Confidence 69999999999999999999999999999875
No 408
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=89.45 E-value=0.35 Score=48.26 Aligned_cols=35 Identities=23% Similarity=0.179 Sum_probs=32.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
..|+|+|-|.+|++||..|.+.|.+|++.|.+...
T Consensus 8 ~kv~V~GLG~sG~a~a~~L~~~G~~v~v~D~~~~~ 42 (448)
T COG0771 8 KKVLVLGLGKSGLAAARFLLKLGAEVTVSDDRPAP 42 (448)
T ss_pred CEEEEEecccccHHHHHHHHHCCCeEEEEcCCCCc
Confidence 46999999999999999999999999999987766
No 409
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=89.37 E-value=0.41 Score=45.73 Aligned_cols=33 Identities=21% Similarity=0.351 Sum_probs=29.7
Q ss_pred cEEEECCChhHHHHHhhhccCC--CeEEEEcCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSG--KKVLHIDRNKY 38 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G--~~V~vlE~~~~ 38 (441)
.|+|||+|..|.++|+.|+..| .++.++|++..
T Consensus 2 kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~ 36 (306)
T cd05291 2 KVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE 36 (306)
T ss_pred EEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc
Confidence 4899999999999999999999 58999998653
No 410
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=89.33 E-value=0.35 Score=45.53 Aligned_cols=32 Identities=25% Similarity=0.274 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||.|.-|.+.|..|+++|++|++++++.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCH
Confidence 48999999999999999999999999999853
No 411
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=89.33 E-value=0.3 Score=46.61 Aligned_cols=33 Identities=24% Similarity=0.447 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
.+.|+|+|-.|+..|++|+++|.+|+++=|.++
T Consensus 2 kI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~ 34 (307)
T COG1893 2 KILILGAGAIGSLLGARLAKAGHDVTLLVRSRR 34 (307)
T ss_pred eEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH
Confidence 489999999999999999999988888887664
No 412
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.31 E-value=0.36 Score=48.81 Aligned_cols=33 Identities=21% Similarity=0.206 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.|+|+|+|-.|+++|..|+++|.+|++.|++.
T Consensus 6 k~v~v~G~g~~G~s~a~~l~~~G~~V~~~d~~~ 38 (447)
T PRK02472 6 KKVLVLGLAKSGYAAAKLLHKLGANVTVNDGKP 38 (447)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCC
Confidence 358999999999999999999999999999765
No 413
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=89.23 E-value=0.46 Score=42.33 Aligned_cols=32 Identities=28% Similarity=0.254 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
..++|+|.|-.|..+|..|.+.|.+|++.|++
T Consensus 29 k~v~I~G~G~vG~~~A~~L~~~G~~Vvv~D~~ 60 (200)
T cd01075 29 KTVAVQGLGKVGYKLAEHLLEEGAKLIVADIN 60 (200)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 46999999999999999999999999999876
No 414
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=89.09 E-value=0.34 Score=49.34 Aligned_cols=33 Identities=21% Similarity=0.286 Sum_probs=30.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.|+|+|+|..|+.|+..+...|.+|.++|.++
T Consensus 166 ~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~ 198 (509)
T PRK09424 166 AKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRP 198 (509)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999864
No 415
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=89.06 E-value=0.42 Score=47.40 Aligned_cols=33 Identities=21% Similarity=0.132 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.|+|+|+|..|+.+|..|...|.+|+++|.++
T Consensus 203 ktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~ 235 (413)
T cd00401 203 KVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDP 235 (413)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEECCh
Confidence 479999999999999999999999999999865
No 416
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.97 E-value=0.45 Score=48.08 Aligned_cols=35 Identities=20% Similarity=0.160 Sum_probs=31.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYY 39 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~ 39 (441)
..++|+|.|.+|+++|.+|++.|++|++.|..+..
T Consensus 6 ~~~~v~G~g~~G~~~a~~l~~~g~~v~~~d~~~~~ 40 (445)
T PRK04308 6 KKILVAGLGGTGISMIAYLRKNGAEVAAYDAELKP 40 (445)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCCCc
Confidence 36999999999999999999999999999987653
No 417
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=88.94 E-value=0.44 Score=43.11 Aligned_cols=32 Identities=31% Similarity=0.314 Sum_probs=28.9
Q ss_pred cEEEEC-CChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLG-TGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIG-aG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.||| +|.-|.+.|..|+++|++|.++.+++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G~~V~v~~r~~ 34 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAGNKIIIGSRDL 34 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCCCEEEEEEcCH
Confidence 489997 79999999999999999999998754
No 418
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=88.93 E-value=0.39 Score=45.73 Aligned_cols=31 Identities=19% Similarity=0.328 Sum_probs=28.4
Q ss_pred EEEECCChhHHHHHhhhccCCC-eEEEEcCCC
Q psy2620 7 AIVLGTGLKECILSGMLSVSGK-KVLHIDRNK 37 (441)
Q Consensus 7 VvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~~ 37 (441)
|.|||+|..|..+|..|+..|+ +|+++|.+.
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~e 32 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIVE 32 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCCC
Confidence 5799999999999999999887 999999874
No 419
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.83 E-value=0.41 Score=48.73 Aligned_cols=34 Identities=9% Similarity=-0.182 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
-.|+|+|.|.+|.++|..|.+.|.+|++.|.++.
T Consensus 9 ~~v~v~G~G~sG~~~~~~l~~~g~~v~~~d~~~~ 42 (468)
T PRK04690 9 RRVALWGWGREGRAAYRALRAHLPAQALTLFCNA 42 (468)
T ss_pred CEEEEEccchhhHHHHHHHHHcCCEEEEEcCCCc
Confidence 3699999999999999999999999999997654
No 420
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=88.76 E-value=0.38 Score=49.28 Aligned_cols=33 Identities=21% Similarity=0.315 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||+|.-|...|..|+++|++|+++|+++
T Consensus 6 ~kV~VIGaG~MG~gIA~~la~aG~~V~l~d~~~ 38 (503)
T TIGR02279 6 VTVAVIGAGAMGAGIAQVAASAGHQVLLYDIRA 38 (503)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence 458999999999999999999999999999874
No 421
>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC. Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.
Probab=88.74 E-value=0.62 Score=42.90 Aligned_cols=35 Identities=17% Similarity=0.190 Sum_probs=31.7
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
...++|+|+|+.+...|..++..|++|+|+|.++.
T Consensus 100 ~~~L~IfGaG~va~~la~la~~lGf~V~v~D~R~~ 134 (246)
T TIGR02964 100 APHVVLFGAGHVGRALVRALAPLPCRVTWVDSREA 134 (246)
T ss_pred CCEEEEECCcHHHHHHHHHHhcCCCEEEEEeCCcc
Confidence 46899999999999999999999999999996643
No 422
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=88.65 E-value=0.52 Score=45.68 Aligned_cols=33 Identities=30% Similarity=0.461 Sum_probs=30.1
Q ss_pred cccEEEECCChhHHHHHhhhccCCC-eEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~ 36 (441)
...|+|||+|-.|..+|.+|+++|. +++++|..
T Consensus 24 ~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 24 EKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4579999999999999999999997 89999973
No 423
>KOG2755|consensus
Probab=88.61 E-value=0.27 Score=44.83 Aligned_cols=34 Identities=21% Similarity=0.313 Sum_probs=28.7
Q ss_pred EEEECCChhHHHHHhhhccC--CCeEEEEcCCCCCC
Q psy2620 7 AIVLGTGLKECILSGMLSVS--GKKVLHIDRNKYYG 40 (441)
Q Consensus 7 VvIIGaG~~Gl~aA~~La~~--G~~V~vlE~~~~~G 40 (441)
.+|||||++|.+||-.|+.. ..+|+++-+.+.+-
T Consensus 2 fivvgggiagvscaeqla~~~psa~illitass~vk 37 (334)
T KOG2755|consen 2 FIVVGGGIAGVSCAEQLAQLEPSAEILLITASSFVK 37 (334)
T ss_pred eEEEcCccccccHHHHHHhhCCCCcEEEEeccHHHH
Confidence 58999999999999999854 56899998876654
No 424
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=88.59 E-value=0.51 Score=40.47 Aligned_cols=32 Identities=22% Similarity=0.253 Sum_probs=27.9
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|-+||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~~a~~L~~~g~~v~~~d~~~ 34 (163)
T PF03446_consen 3 KIGFIGLGNMGSAMARNLAKAGYEVTVYDRSP 34 (163)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTTEEEEEESSH
T ss_pred EEEEEchHHHHHHHHHHHHhcCCeEEeeccch
Confidence 68999999999999999999999999999753
No 425
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=88.50 E-value=0.48 Score=47.56 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=31.2
Q ss_pred cEEEECCChhHHHHHhhhcc--------------CCCeEEEEcCCCCCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSV--------------SGKKVLHIDRNKYYGG 41 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~--------------~G~~V~vlE~~~~~GG 41 (441)
.|+|||+|..|+-.|..|+. .|.+|+++|+.+.+..
T Consensus 175 ~vvVvGgG~~GvE~A~~l~~~~~~~~~~~~~~~~~~~~Vtlv~~~~~ll~ 224 (424)
T PTZ00318 175 HFVVVGGGPTGVEFAAELADFFRDDVRNLNPELVEECKVTVLEAGSEVLG 224 (424)
T ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHhhhhcccccCEEEEEcCCCcccc
Confidence 79999999999999998875 4899999999876643
No 426
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.45 E-value=0.46 Score=48.61 Aligned_cols=32 Identities=19% Similarity=0.248 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
-.|+|+|.|.+|++++..|.+.|.+|++.|.+
T Consensus 13 ~~v~V~G~G~sG~aa~~~L~~~G~~v~~~D~~ 44 (488)
T PRK03369 13 APVLVAGAGVTGRAVLAALTRFGARPTVCDDD 44 (488)
T ss_pred CeEEEEcCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 36899999999999999999999999999965
No 427
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=88.41 E-value=0.64 Score=44.57 Aligned_cols=34 Identities=24% Similarity=0.314 Sum_probs=30.4
Q ss_pred cccEEEECCChhHHHHHhhhccCCC--eEEEEcCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGK--KVLHIDRNK 37 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~--~V~vlE~~~ 37 (441)
...|.|||+|..|.++|+.|+..|. .+.++|.+.
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~~ 41 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDINK 41 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 3689999999999999999999997 799999854
No 428
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=88.29 E-value=1.9 Score=42.30 Aligned_cols=109 Identities=14% Similarity=0.127 Sum_probs=60.3
Q ss_pred CCcHHHHHHHhCCCcchhH-HHHHHhhcccCccccchhHHHHHHHHHHHHHHhhhhCCCCeeeecCCcchHHHHHHHHHH
Q psy2620 165 SATTAQLYDKFGLDPNTKD-FTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSA 243 (441)
Q Consensus 165 ~~s~~~~l~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~s~~~~G~~~~~~~~gG~~~l~~~l~~~~~ 243 (441)
..++.+++++.|+++.+.+ ++..+... .|-++....+ +...+...+ ..++...++||...+++.|.+
T Consensus 69 ~~t~~e~L~~~gi~~~fi~Elv~a~tRv----NYgQ~~~i~a---~~G~vSla~--a~~gl~sV~GGN~qI~~~ll~--- 136 (368)
T PF07156_consen 69 KVTGEEYLKENGISERFINELVQAATRV----NYGQNVNIHA---FAGLVSLAG--ATGGLWSVEGGNWQIFEGLLE--- 136 (368)
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHhheEe----ecccccchhh---hhhheeeee--ccCCceEecCCHHHHHHHHHH---
Confidence 3577788888888776654 43322221 1222111112 222221111 123566789999999999966
Q ss_pred HcCcEEEcccceeEEE-E-eCCE-EEEEEe---CC-eEEEcCEEEECCCC
Q psy2620 244 IYGGTYMLDKPVDEIV-I-ENGK-VVGVRS---GT-EIARCKQVYCDPSY 286 (441)
Q Consensus 244 ~~G~~i~~~~~V~~i~-~-~~~~-~~~v~~---~g-~~~~a~~vI~~~~~ 286 (441)
.-|+.+ ++++|++|. . .++. ...|.. .+ ..-..|.||+++..
T Consensus 137 ~S~A~v-l~~~Vt~I~~~~~~~~~~y~v~~~~~~~~~~~~yD~VVIAtPl 185 (368)
T PF07156_consen 137 ASGANV-LNTTVTSITRRSSDGYSLYEVTYKSSSGTESDEYDIVVIATPL 185 (368)
T ss_pred HccCcE-ecceeEEEEeccCCCceeEEEEEecCCCCccccCCEEEECCCc
Confidence 457889 999999993 3 2332 223332 22 23345988876543
No 429
>PRK06116 glutathione reductase; Validated
Probab=87.98 E-value=2 Score=43.44 Aligned_cols=57 Identities=4% Similarity=-0.064 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+.+.+.+.++..|++++++++|++|..+++....|.+ +|+++.+|.||++.+..|
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~g~~~v~~~~g~~i~~D~Vv~a~G~~p 265 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNADGSLTLTLEDGETLTVDCLIWAIGREP 265 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCCceEEEEEcCCcEEEeCEEEEeeCCCc
Confidence 457777888888999999999999999865433233554 678899999999877655
No 430
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=87.97 E-value=0.45 Score=51.56 Aligned_cols=34 Identities=18% Similarity=0.096 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCe-EEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKK-VLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~-V~vlE~~~~ 38 (441)
-.|||||+|.+|+-+|..|.+.|.+ |+++++++.
T Consensus 571 k~VvVIGgG~~a~d~A~~~~r~Ga~~Vtlv~r~~~ 605 (752)
T PRK12778 571 KKVAVVGGGNTAMDSARTAKRLGAERVTIVYRRSE 605 (752)
T ss_pred CcEEEECCcHHHHHHHHHHHHcCCCeEEEeeecCc
Confidence 3799999999999999999999986 999998654
No 431
>PRK06223 malate dehydrogenase; Reviewed
Probab=87.95 E-value=0.58 Score=44.72 Aligned_cols=34 Identities=18% Similarity=0.223 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCC-eEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGK-KVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~~~ 38 (441)
..|.|||+|..|...|..|+..|+ +|.++|.+..
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~~~~ 37 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDIVEG 37 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEECCCc
Confidence 379999999999999999999876 9999998543
No 432
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=87.90 E-value=0.44 Score=51.17 Aligned_cols=32 Identities=28% Similarity=0.309 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||+|.-|...|..++++|++|+++|.++
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (715)
T PRK11730 315 QAAVLGAGIMGGGIAYQSASKGVPVIMKDINQ 346 (715)
T ss_pred eEEEECCchhHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999999999999999999999999999864
No 433
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=87.90 E-value=0.51 Score=38.97 Aligned_cols=32 Identities=22% Similarity=0.335 Sum_probs=28.5
Q ss_pred cccEEEECCChhHHHHHhhhccCCC-eEEEEcC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGK-KVLHIDR 35 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~ 35 (441)
+..|+|||+|-.|+.+|..|++.|. +++++|.
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~ 34 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDD 34 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEES
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCC
Confidence 3579999999999999999999995 7999996
No 434
>PF03853 YjeF_N: YjeF-related protein N-terminus; InterPro: IPR004443 The YjeF N-terminal domains occur either as single proteins or fusions with other domains and are commonly associated with enzymes. In bacteria and archaea, YjeF N-terminal domains are often fused to a YjeF C-terminal domain with high structural homology to the members of a ribokinase-like superfamily (see PDOC00806 from PROSITEDOC)and/or belong to operons that encode enzymes of diverse functions: pyridoxal phosphate biosynthetic protein PdxJ; phosphopanteine-protein transferase; ATP/GTP hydrolase; and pyruvate-formate lyase 1-activating enzyme. In plants, the YjeF N-terminal domain is fused to a C-terminal putative pyridoxamine 5'-phosphate oxidase. In eukaryotes, proteins that consist of (Sm)-FDF-YjeF N-terminal domains may be involved in RNA processing [, ]. The YjeF N-terminal domains represent a novel version of the Rossmann fold, one of the most common protein folds in nature observed in numerous enzyme families, that has acquired a set of catalytic residues and structural features that distinguish them from the conventional dehydrogenases. The YjeF N-terminal domain is comprised of a three-layer alpha-beta-alpha sandwich with a central beta-sheet surrounded by helices. The conservation of the acidic residues in the predicted active site of the YjeF N-terminal domains is reminiscent of the presence of such residues in the active sites of diverse hydrolases [, ].; PDB: 3K5W_A 2O8N_A 2DG2_F 3RNO_A 1JZT_B 3D3K_A 3D3J_A 3RSG_A 3RT9_A 3RRF_A ....
Probab=87.82 E-value=0.58 Score=40.41 Aligned_cols=26 Identities=23% Similarity=0.267 Sum_probs=23.0
Q ss_pred EEEECCChh---HHHHHhhhccCCCeEEE
Q psy2620 7 AIVLGTGLK---ECILSGMLSVSGKKVLH 32 (441)
Q Consensus 7 VvIIGaG~~---Gl~aA~~La~~G~~V~v 32 (441)
+|++|.|-| |+++|++|+++|++|.|
T Consensus 29 ~il~G~GnNGgDgl~~AR~L~~~G~~V~v 57 (169)
T PF03853_consen 29 LILCGPGNNGGDGLVAARHLANRGYNVTV 57 (169)
T ss_dssp EEEE-SSHHHHHHHHHHHHHHHTTCEEEE
T ss_pred EEEECCCCChHHHHHHHHHHHHCCCeEEE
Confidence 688999988 69999999999999998
No 435
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=87.69 E-value=0.84 Score=34.38 Aligned_cols=32 Identities=34% Similarity=0.433 Sum_probs=29.0
Q ss_pred cccEEEECCChhHHHHHhhhccC-CCeEEEEcC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVS-GKKVLHIDR 35 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~-G~~V~vlE~ 35 (441)
...++|+|+|..|..+|.+|.+. +.+|.++++
T Consensus 23 ~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 23 GKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 35799999999999999999998 689999988
No 436
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=87.65 E-value=0.65 Score=44.98 Aligned_cols=34 Identities=24% Similarity=0.320 Sum_probs=30.2
Q ss_pred cccEEEECCChhHHHHHhhhccCCC-eEEEEcCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRNK 37 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~~ 37 (441)
...|+|||+|-.|..+|..|+++|. +++++|...
T Consensus 24 ~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 24 EKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 3579999999999999999999996 899899743
No 437
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=87.63 E-value=0.65 Score=47.68 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
-.|.|||+|.-|...|..|+++|++|+++|++..
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~~V~l~D~~~e 41 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGHTVLLYDARAG 41 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEeCCHH
Confidence 4589999999999999999999999999998753
No 438
>KOG3851|consensus
Probab=87.29 E-value=0.47 Score=44.58 Aligned_cols=57 Identities=12% Similarity=0.117 Sum_probs=37.6
Q ss_pred CCcchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEeC--C--eEEEcCEEEECCC
Q psy2620 229 YGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSG--T--EIARCKQVYCDPS 285 (441)
Q Consensus 229 gG~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~~--g--~~~~a~~vI~~~~ 285 (441)
-|....++||.+.+++...++.+.....++..++..++=-.++ | +++..+.+-+.|.
T Consensus 233 FgVk~Y~~AL~k~~~~rni~vn~krnLiEV~~~~~~AvFe~L~kPG~t~ei~yslLHv~Pp 293 (446)
T KOG3851|consen 233 FGVKHYADALEKVIQERNITVNYKRNLIEVRTNDRKAVFENLDKPGVTEEIEYSLLHVTPP 293 (446)
T ss_pred ecHHHHHHHHHHHHHhcceEeeeccceEEEeccchhhHHHhcCCCCceeEEeeeeeeccCC
Confidence 4567889999999999898998888887776544432111122 4 5566665555544
No 439
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=87.25 E-value=0.58 Score=44.31 Aligned_cols=32 Identities=16% Similarity=0.132 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||.|.-|...|..|+++|++|++++++.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~~~dr~~ 32 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLHVTTIGP 32 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 37899999999999999999999999999874
No 440
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.21 E-value=0.67 Score=46.72 Aligned_cols=33 Identities=18% Similarity=0.245 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|.|||-|.+|.+++.+|++.|++|++.|.+.
T Consensus 7 ~~i~v~G~G~sG~s~~~~l~~~G~~v~~~D~~~ 39 (438)
T PRK03806 7 KKVVIIGLGLTGLSCVDFFLARGVTPRVIDTRI 39 (438)
T ss_pred CEEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCC
Confidence 469999999999999999999999999999765
No 441
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=87.10 E-value=0.68 Score=46.85 Aligned_cols=37 Identities=22% Similarity=0.257 Sum_probs=32.7
Q ss_pred CCCcccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
|..+--|+|||-|-+|.++|..|.+.|++|.+.|.++
T Consensus 3 ~~~~~~~~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 39 (448)
T PRK03803 3 MQSDGLHIVVGLGKTGLSVVRFLARQGIPFAVMDSRE 39 (448)
T ss_pred cccCCeEEEEeecHhHHHHHHHHHhCCCeEEEEeCCC
Confidence 4445568999999999999999999999999999765
No 442
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=87.09 E-value=0.68 Score=43.71 Aligned_cols=33 Identities=18% Similarity=0.228 Sum_probs=29.7
Q ss_pred ccEEEECCChhHHHHHhhhccCCC-eEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGK-KVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~~ 37 (441)
..|+|||+|-+|.++|+.|++.|. +|+|++|+.
T Consensus 128 k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~ 161 (284)
T PRK12549 128 ERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP 161 (284)
T ss_pred CEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH
Confidence 369999999999999999999995 899999864
No 443
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=86.99 E-value=0.6 Score=50.04 Aligned_cols=32 Identities=25% Similarity=0.314 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||+|.-|...|..++++|++|+++|.+.
T Consensus 315 ~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~ 346 (714)
T TIGR02437 315 QAAVLGAGIMGGGIAYQSASKGTPIVMKDINQ 346 (714)
T ss_pred eEEEECCchHHHHHHHHHHhCCCeEEEEeCCH
Confidence 58999999999999999999999999999864
No 444
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=86.82 E-value=0.64 Score=44.06 Aligned_cols=32 Identities=19% Similarity=0.363 Sum_probs=30.1
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
..|.|||||.-|.-.|..++.+|++|+++|.+
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAGYDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcCCceEEEeCC
Confidence 46899999999999999999988999999997
No 445
>PRK14694 putative mercuric reductase; Provisional
Probab=86.64 E-value=2.7 Score=42.80 Aligned_cols=41 Identities=22% Similarity=0.322 Sum_probs=37.7
Q ss_pred CcccEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~~ 44 (441)
..|||||||||++|++||.+|++.|++|+++|++ .+||.|.
T Consensus 5 ~~~dviVIGaG~aG~~aA~~l~~~g~~v~lie~~-~~GGtc~ 45 (468)
T PRK14694 5 NNLHIAVIGSGGSAMAAALKATERGARVTLIERG-TIGGTCV 45 (468)
T ss_pred CcCCEEEECCCHHHHHHHHHHHhCCCcEEEEEcc-cccccee
Confidence 4699999999999999999999999999999996 6888774
No 446
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=86.64 E-value=0.74 Score=43.75 Aligned_cols=34 Identities=26% Similarity=0.295 Sum_probs=31.3
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
...|+|||.|..|..+|..|.+.|.+|.+++++.
T Consensus 152 g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~ 185 (296)
T PRK08306 152 GSNVLVLGFGRTGMTLARTLKALGANVTVGARKS 185 (296)
T ss_pred CCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence 3579999999999999999999999999999874
No 447
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=86.53 E-value=0.79 Score=45.13 Aligned_cols=33 Identities=21% Similarity=0.461 Sum_probs=30.5
Q ss_pred ccEEEEC-CChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLG-TGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIG-aG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.|.||| .|.-|...|..|.++|++|.++++++
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~~V~~~d~~~ 132 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGYQVRILEQDD 132 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCCeEEEeCCCc
Confidence 4699999 89999999999999999999999865
No 448
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.45 E-value=0.69 Score=46.99 Aligned_cols=34 Identities=24% Similarity=0.110 Sum_probs=30.8
Q ss_pred ccEEEECCChhHHH-HHhhhccCCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECI-LSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~-aA~~La~~G~~V~vlE~~~~ 38 (441)
-.|.|||.|-+|++ +|.+|.+.|++|.+.|.+..
T Consensus 8 ~~v~viG~G~sG~s~~a~~L~~~G~~V~~~D~~~~ 42 (461)
T PRK00421 8 KRIHFVGIGGIGMSGLAEVLLNLGYKVSGSDLKES 42 (461)
T ss_pred CEEEEEEEchhhHHHHHHHHHhCCCeEEEECCCCC
Confidence 36999999999999 69999999999999998764
No 449
>PRK08017 oxidoreductase; Provisional
Probab=86.36 E-value=0.89 Score=41.79 Aligned_cols=32 Identities=19% Similarity=0.109 Sum_probs=28.9
Q ss_pred cEEEECC-ChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGT-GLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGa-G~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|+|.|+ |..|..+|..|+++|++|+++.++.
T Consensus 4 ~vlVtGasg~IG~~la~~l~~~g~~v~~~~r~~ 36 (256)
T PRK08017 4 SVLITGCSSGIGLEAALELKRRGYRVLAACRKP 36 (256)
T ss_pred EEEEECCCChHHHHHHHHHHHCCCEEEEEeCCH
Confidence 4999998 9999999999999999999988753
No 450
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=86.24 E-value=0.84 Score=43.32 Aligned_cols=32 Identities=25% Similarity=0.285 Sum_probs=29.8
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||.|.-|...|..|++.|++|++++++.
T Consensus 4 ~IgviG~G~mG~~~a~~l~~~g~~v~~~d~~~ 35 (296)
T PRK11559 4 KVGFIGLGIMGKPMSKNLLKAGYSLVVYDRNP 35 (296)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 69999999999999999999999999999864
No 451
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=86.21 E-value=0.96 Score=39.94 Aligned_cols=32 Identities=28% Similarity=0.400 Sum_probs=29.0
Q ss_pred ccEEEECC-ChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGT-GLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGa-G~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
..++|+|+ |-.|..+|..|++.|.+|+++.|+
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~~R~ 61 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLAREGARVVLVGRD 61 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHCCCEEEEEcCC
Confidence 47999996 999999999999999999999875
No 452
>PRK14573 bifunctional D-alanyl-alanine synthetase A/UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=86.04 E-value=0.72 Score=50.44 Aligned_cols=37 Identities=19% Similarity=0.060 Sum_probs=33.6
Q ss_pred CCCcccEEEECCChhHHHH-HhhhccCCCeEEEEcCCC
Q psy2620 1 MDEEYDAIVLGTGLKECIL-SGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGaG~~Gl~a-A~~La~~G~~V~vlE~~~ 37 (441)
|++...+.|||-|-+|+++ |..|++.|++|++.|.+.
T Consensus 1 ~~~~~~i~viG~G~sG~salA~~L~~~G~~V~~sD~~~ 38 (809)
T PRK14573 1 MMKSLFYHFIGIGGIGMSALAHILLDRGYSVSGSDLSE 38 (809)
T ss_pred CCCcceEEEEEecHHhHHHHHHHHHHCCCeEEEECCCC
Confidence 6666679999999999999 999999999999999865
No 453
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.03 E-value=0.76 Score=46.54 Aligned_cols=31 Identities=19% Similarity=0.071 Sum_probs=28.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
-.|+|+|.|.+|.++|..|.+ |.+|+|.|.+
T Consensus 7 ~~v~v~G~G~sG~a~~~~L~~-g~~v~v~D~~ 37 (454)
T PRK01368 7 QKIGVFGLGKTGISVYEELQN-KYDVIVYDDL 37 (454)
T ss_pred CEEEEEeecHHHHHHHHHHhC-CCEEEEECCC
Confidence 469999999999999999995 9999999965
No 454
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=86.00 E-value=0.72 Score=47.37 Aligned_cols=32 Identities=19% Similarity=0.256 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|+|.|.+|+++|.+|.+.|++|.+.|.+.
T Consensus 9 ~i~v~G~G~sG~s~a~~L~~~G~~v~~~D~~~ 40 (498)
T PRK02006 9 MVLVLGLGESGLAMARWCARHGARLRVADTRE 40 (498)
T ss_pred EEEEEeecHhHHHHHHHHHHCCCEEEEEcCCC
Confidence 59999999999999999999999999999765
No 455
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=85.96 E-value=0.95 Score=41.55 Aligned_cols=33 Identities=21% Similarity=0.389 Sum_probs=29.1
Q ss_pred cccEEEECCChhHHHHHhhhccCC-CeEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~ 36 (441)
...|+|||+|-.|..+|..|+++| .+++++|..
T Consensus 24 ~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 24 ASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred CCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 468999999999999999999999 578888863
No 456
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=85.95 E-value=0.74 Score=43.76 Aligned_cols=32 Identities=19% Similarity=0.240 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
+|.|||.|.-|...|..|+++|++|.+++++.
T Consensus 3 ~Ig~IGlG~mG~~mA~~l~~~G~~V~v~d~~~ 34 (296)
T PRK15461 3 AIAFIGLGQMGSPMASNLLKQGHQLQVFDVNP 34 (296)
T ss_pred eEEEEeeCHHHHHHHHHHHHCCCeEEEEcCCH
Confidence 68999999999999999999999999999864
No 457
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=85.94 E-value=1 Score=37.53 Aligned_cols=31 Identities=26% Similarity=0.287 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHhhhccCCC-eEEEEcCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGK-KVLHIDRN 36 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~ 36 (441)
.|+|||.|-.|..+|..|++.|. +++++|..
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 38999999999999999999996 79999864
No 458
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=85.94 E-value=0.9 Score=39.43 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=28.1
Q ss_pred cEEEECCChhHHHHHhhhccCCC-eEEEEcCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGK-KVLHIDRN 36 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~ 36 (441)
.|+|||+|-.|..+|..|+++|. +++++|..
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 38999999999999999999996 59999974
No 459
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=85.83 E-value=1.1 Score=37.50 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=28.5
Q ss_pred cEEEECC-ChhHHHHHhhhccCC--CeEEEEcCCC
Q psy2620 6 DAIVLGT-GLKECILSGMLSVSG--KKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGa-G~~Gl~aA~~La~~G--~~V~vlE~~~ 37 (441)
.|.|||+ |..|..+|..|...| .++.++|.+.
T Consensus 2 KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~ 36 (141)
T PF00056_consen 2 KVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINE 36 (141)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSH
T ss_pred EEEEECCCChHHHHHHHHHHhCCCCCceEEeccCc
Confidence 5899999 999999999999887 4799999864
No 460
>PLN02507 glutathione reductase
Probab=85.82 E-value=3.3 Score=42.57 Aligned_cols=42 Identities=21% Similarity=0.228 Sum_probs=37.8
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcC---------CCCCCCcccc
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDR---------NKYYGGESAS 45 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~---------~~~~GG~~~t 45 (441)
+|||||||+|++|+.||.++++.|++|+++|+ .+.+||.|..
T Consensus 25 ~yDvvVIG~GpaG~~aA~~a~~~G~~V~liE~~~~~~~~~~~~~~GGtc~n 75 (499)
T PLN02507 25 DFDLFVIGAGSGGVRAARFSANFGAKVGICELPFHPISSESIGGVGGTCVI 75 (499)
T ss_pred ccCEEEECCCHHHHHHHHHHHHCCCeEEEEeccCcccccccCCCccceeec
Confidence 59999999999999999999999999999996 3678998743
No 461
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=85.71 E-value=0.73 Score=46.92 Aligned_cols=33 Identities=21% Similarity=0.291 Sum_probs=30.4
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|+|+|+|..|+.++..+...|.+|+++|.+.
T Consensus 165 akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~ 197 (511)
T TIGR00561 165 AKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRP 197 (511)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 579999999999999999999999999999864
No 462
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.65 E-value=0.83 Score=46.60 Aligned_cols=33 Identities=30% Similarity=0.365 Sum_probs=30.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.|.|+|.|-+|.++|.+|.+.|.+|.+.|++.
T Consensus 16 ~~v~v~G~G~sG~a~a~~L~~~G~~V~~~D~~~ 48 (473)
T PRK00141 16 GRVLVAGAGVSGRGIAAMLSELGCDVVVADDNE 48 (473)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCCEEEEECCCh
Confidence 359999999999999999999999999999753
No 463
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=85.53 E-value=0.69 Score=49.79 Aligned_cols=32 Identities=25% Similarity=0.263 Sum_probs=30.1
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|.|||+|.-|.-.|..++.+|++|+++|.++
T Consensus 337 ~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~ 368 (737)
T TIGR02441 337 TLAVLGAGLMGAGIAQVSVDKGLKTVLKDATP 368 (737)
T ss_pred EEEEECCCHhHHHHHHHHHhCCCcEEEecCCH
Confidence 58999999999999999999999999999864
No 464
>PRK06849 hypothetical protein; Provisional
Probab=85.36 E-value=1.1 Score=44.49 Aligned_cols=38 Identities=21% Similarity=0.365 Sum_probs=34.2
Q ss_pred CCCcccEEEECCCh-hHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 1 MDEEYDAIVLGTGL-KECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 1 m~~~~DVvIIGaG~-~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
|.+...|+|+|++. .|+..|..|.++|++|++++.+..
T Consensus 1 ~~~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~ 39 (389)
T PRK06849 1 MNTKKTVLITGARAPAALELARLFHNAGHTVILADSLKY 39 (389)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCch
Confidence 66778899999998 699999999999999999998764
No 465
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=85.32 E-value=0.8 Score=50.68 Aligned_cols=34 Identities=18% Similarity=0.149 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY 38 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~ 38 (441)
-+|||||||-+|+=+|..+.+.|.+|+++.+++.
T Consensus 448 k~VvVIGGG~tA~D~A~ta~R~Ga~Vtlv~rr~~ 481 (944)
T PRK12779 448 KEVFVIGGGNTAMDAARTAKRLGGNVTIVYRRTK 481 (944)
T ss_pred CEEEEECCCHHHHHHHHHHHHcCCEEEEEEecCc
Confidence 3699999999999999999999999999998753
No 466
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=85.32 E-value=3.4 Score=38.80 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=43.0
Q ss_pred chHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe-CCeEEEcCEEEECCCCCc
Q psy2620 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS-GTEIARCKQVYCDPSYVQ 288 (441)
Q Consensus 232 ~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~-~g~~~~a~~vI~~~~~~~ 288 (441)
..+...+.+.++.+|+++++ +.|++|..+++. ..|.+ ++.++.+|+||.+++..|
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~~~-~~v~~~~~~~~~~d~liiAtG~~~ 112 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSDRP-FKVKTGDGKEYTAKAVIIATGASA 112 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecCCe-eEEEeCCCCEEEeCEEEECCCCCc
Confidence 36777888888889999998 899999875544 34554 567899999999888765
No 467
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=85.31 E-value=1 Score=41.42 Aligned_cols=33 Identities=24% Similarity=0.385 Sum_probs=29.4
Q ss_pred cccEEEECCChhHHHHHhhhccCC-CeEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~ 36 (441)
...|+|||.|-.|+.+|..|+++| .+++++|..
T Consensus 32 ~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 32 AARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred CCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 468999999999999999999999 588888863
No 468
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=85.24 E-value=0.69 Score=37.79 Aligned_cols=33 Identities=18% Similarity=0.300 Sum_probs=28.4
Q ss_pred cccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
...|.|||+|-.|-..|.+|.++|+.|.-+..+
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 358999999999999999999999999877653
No 469
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=85.23 E-value=1.1 Score=40.21 Aligned_cols=33 Identities=18% Similarity=0.167 Sum_probs=29.4
Q ss_pred cccEEEECCChhHHHHHhhhccCCC-eEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~ 36 (441)
...|+|||+|-.|..+|..|++.|. +++++|..
T Consensus 28 ~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 28 KAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred CCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4679999999999999999999995 59999874
No 470
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.20 E-value=0.88 Score=45.59 Aligned_cols=33 Identities=24% Similarity=0.426 Sum_probs=30.5
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.|.|||-|.+|.++|..|.+.|++|.+.|++.
T Consensus 4 ~~i~iiGlG~~G~slA~~l~~~G~~V~g~D~~~ 36 (418)
T PRK00683 4 QRVVVLGLGVTGKSIARFLAQKGVYVIGVDKSL 36 (418)
T ss_pred CeEEEEEECHHHHHHHHHHHHCCCEEEEEeCCc
Confidence 469999999999999999999999999999764
No 471
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=85.02 E-value=0.78 Score=46.40 Aligned_cols=32 Identities=28% Similarity=0.377 Sum_probs=30.0
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.|+|+|+|..|...|..|.+.|++|+++|+++
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~~v~vid~~~ 33 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENNDVTVIDTDE 33 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCcEEEEECCH
Confidence 58999999999999999999999999999864
No 472
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=84.90 E-value=0.9 Score=44.34 Aligned_cols=32 Identities=22% Similarity=0.409 Sum_probs=27.2
Q ss_pred cEEEECCChhHHHHHhhhccCC-CeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSG-KKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~ 37 (441)
.|+|+|+|..||.++..+...| .+|++.|.++
T Consensus 171 ~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~ 203 (350)
T COG1063 171 TVVVVGAGPIGLLAIALAKLLGASVVIVVDRSP 203 (350)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCceEEEeCCCH
Confidence 4999999999999988888888 6777778754
No 473
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=84.87 E-value=1.2 Score=39.65 Aligned_cols=33 Identities=15% Similarity=0.282 Sum_probs=29.6
Q ss_pred cccEEEECCChhHHHHHhhhccCCC-eEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G~-~V~vlE~~ 36 (441)
...|+|||.|-.|..+|..|++.|. +++++|..
T Consensus 21 ~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 21 NSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred CCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4679999999999999999999995 89999863
No 474
>TIGR02440 FadJ fatty oxidation complex, alpha subunit FadJ. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Plays a minor role in aerobic beta-oxidation of fatty acids. FadJI complex is necessary for anaerobic growth on short-chain acids with nitrate as an electron acceptor. Activities include: enoyl-CoA hydratase (EC 4.2.1.17),3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadJ (aka YfcX). This model excludes the FadB of TIGR02437 equivalog.
Probab=84.81 E-value=0.8 Score=49.05 Aligned_cols=32 Identities=25% Similarity=0.231 Sum_probs=29.3
Q ss_pred cEEEECCChhHHHHHhhhc-cCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLS-VSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La-~~G~~V~vlE~~~ 37 (441)
.|.|||+|.-|...|..++ ++|++|+++|.++
T Consensus 306 ~v~ViGaG~mG~~iA~~~a~~~G~~V~l~d~~~ 338 (699)
T TIGR02440 306 KVGILGGGLMGGGIASVTATKAGIPVRIKDINP 338 (699)
T ss_pred EEEEECCcHHHHHHHHHHHHHcCCeEEEEeCCH
Confidence 5899999999999999998 6999999999874
No 475
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=84.76 E-value=1.2 Score=44.04 Aligned_cols=33 Identities=15% Similarity=0.107 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|+|||.|..|..+|..|...|.+|+|+|.++
T Consensus 196 k~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp 228 (406)
T TIGR00936 196 KTVVVAGYGWCGKGIAMRARGMGARVIVTEVDP 228 (406)
T ss_pred CEEEEECCCHHHHHHHHHHhhCcCEEEEEeCCh
Confidence 479999999999999999999999999998765
No 476
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=84.61 E-value=1 Score=42.51 Aligned_cols=33 Identities=24% Similarity=0.351 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|+|||.|-.|..+|..|+..|.+|++++|+.
T Consensus 152 k~v~IiG~G~iG~avA~~L~~~G~~V~v~~R~~ 184 (287)
T TIGR02853 152 SNVMVLGFGRTGMTIARTFSALGARVFVGARSS 184 (287)
T ss_pred CEEEEEcChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence 479999999999999999999999999999864
No 477
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=84.61 E-value=1.1 Score=44.71 Aligned_cols=33 Identities=18% Similarity=0.083 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
..|+|+|.|..|..+|..|...|.+|++.|.++
T Consensus 213 k~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp 245 (425)
T PRK05476 213 KVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDP 245 (425)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCc
Confidence 469999999999999999999999999999865
No 478
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=84.39 E-value=1.1 Score=42.50 Aligned_cols=33 Identities=15% Similarity=0.226 Sum_probs=29.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCe-EEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKK-VLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~-V~vlE~~~ 37 (441)
..++|+|+|=+|.++|..|++.|.+ |.|+.|+.
T Consensus 127 k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 127 KKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4689999999999999999999976 99998864
No 479
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=84.38 E-value=0.85 Score=47.59 Aligned_cols=33 Identities=21% Similarity=0.387 Sum_probs=31.0
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-.++|+|.|-.|-..|..|.++|++|+++|+++
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~ 450 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSR 450 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCH
Confidence 468999999999999999999999999999875
No 480
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=84.36 E-value=1.1 Score=41.90 Aligned_cols=32 Identities=16% Similarity=0.199 Sum_probs=29.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
-.++|+|+|-.|..+|..|++.|.+|+++.|+
T Consensus 118 k~vliiGaGg~g~aia~~L~~~g~~v~v~~R~ 149 (270)
T TIGR00507 118 QRVLIIGAGGAARAVALPLLKADCNVIIANRT 149 (270)
T ss_pred CEEEEEcCcHHHHHHHHHHHHCCCEEEEEeCC
Confidence 46899999999999999999999999999875
No 481
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=84.26 E-value=3.7 Score=42.02 Aligned_cols=43 Identities=23% Similarity=0.308 Sum_probs=38.7
Q ss_pred CcccEEEECCChhHHHHHhhhccC-CCeEEEEcCC--------CCCCCcccc
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVS-GKKVLHIDRN--------KYYGGESAS 45 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~-G~~V~vlE~~--------~~~GG~~~t 45 (441)
.+|||||||+|.+|..||..+++. |++|+++|++ +.+||.|-.
T Consensus 2 ~~~DviVIG~G~~G~~aA~~aa~~~g~~V~lie~~~~~~~~~~~~~GGtCln 53 (486)
T TIGR01423 2 KAFDLVVIGAGSGGLEAGWNAATLYKKRVAVIDVQTHHGPPHYAALGGTCVN 53 (486)
T ss_pred CccCEEEECCChHHHHHHHHHHHhcCCEEEEEecccCccccccCCccCeecC
Confidence 579999999999999999999997 9999999984 578998743
No 482
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=84.19 E-value=1.2 Score=42.55 Aligned_cols=33 Identities=21% Similarity=0.335 Sum_probs=29.3
Q ss_pred ccEEEECCChhHHHHHhhhccCCC--eEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGK--KVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~--~V~vlE~~~ 37 (441)
-.|.|||+|..|.+.|..|+++|. +|.+++++.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 369999999999999999999994 899998864
No 483
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=84.17 E-value=1.2 Score=40.83 Aligned_cols=33 Identities=15% Similarity=0.112 Sum_probs=28.0
Q ss_pred CcccEEEECCChhHHHHHhhhccCC-----------CeEEEEcC
Q psy2620 3 EEYDAIVLGTGLKECILSGMLSVSG-----------KKVLHIDR 35 (441)
Q Consensus 3 ~~~DVvIIGaG~~Gl~aA~~La~~G-----------~~V~vlE~ 35 (441)
+...|+|||+|-.|+.++-.|++.| .+++++|.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~ 53 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDD 53 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECC
Confidence 4578999999999999999999975 27777775
No 484
>COG0062 Uncharacterized conserved protein [Function unknown]
Probab=84.15 E-value=1.1 Score=39.82 Aligned_cols=29 Identities=17% Similarity=0.206 Sum_probs=25.1
Q ss_pred EEEECCChh---HHHHHhhhccCCCeEEEEcC
Q psy2620 7 AIVLGTGLK---ECILSGMLSVSGKKVLHIDR 35 (441)
Q Consensus 7 VvIIGaG~~---Gl~aA~~La~~G~~V~vlE~ 35 (441)
.|++|.|-| |++||.+|..+|++|.|+=.
T Consensus 53 ~vlcG~GnNGGDG~VaAR~L~~~G~~V~v~~~ 84 (203)
T COG0062 53 LVLCGPGNNGGDGLVAARHLKAAGYAVTVLLL 84 (203)
T ss_pred EEEECCCCccHHHHHHHHHHHhCCCceEEEEe
Confidence 578899998 79999999999999888643
No 485
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=84.14 E-value=0.86 Score=46.26 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=30.6
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
-+|+|||+|.+|+=.|..|++.+.+|+++.++.
T Consensus 205 k~VvVVG~G~Sg~diA~~L~~~a~~V~l~~r~~ 237 (461)
T PLN02172 205 EVVVVIGNFASGADISRDIAKVAKEVHIASRAS 237 (461)
T ss_pred CEEEEECCCcCHHHHHHHHHHhCCeEEEEEeec
Confidence 479999999999999999999999999999865
No 486
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=84.13 E-value=1.3 Score=42.37 Aligned_cols=32 Identities=22% Similarity=0.338 Sum_probs=28.0
Q ss_pred cEEEECCChhHHHHHhhhccCCC--eEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGK--KVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~--~V~vlE~~~ 37 (441)
.|.|||+|..|.++|+.|+..|. ++.++|.+.
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~~ 34 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVNE 34 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 47999999999999999998885 689999753
No 487
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=84.07 E-value=3.3 Score=30.47 Aligned_cols=39 Identities=15% Similarity=0.046 Sum_probs=31.6
Q ss_pred cchHHHHHHHHHHHcCcEEEcccceeEEEEeCCEEEEEEe
Q psy2620 231 LGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS 270 (441)
Q Consensus 231 ~~~l~~~l~~~~~~~G~~i~~~~~V~~i~~~~~~~~~v~~ 270 (441)
...+.+.+.+.+++.|+++++++.|++|..+++.+. |++
T Consensus 39 ~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~~~~-V~~ 77 (80)
T PF00070_consen 39 DPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGDGVE-VTL 77 (80)
T ss_dssp SHHHHHHHHHHHHHTTEEEEESEEEEEEEEETTSEE-EEE
T ss_pred CHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCCEEE-EEE
Confidence 356777778888999999999999999998765555 665
No 488
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=84.03 E-value=1.3 Score=43.66 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=30.7
Q ss_pred CcccEEEECC-ChhHHHHHhhhccCCCeEEEEcCC
Q psy2620 3 EEYDAIVLGT-GLKECILSGMLSVSGKKVLHIDRN 36 (441)
Q Consensus 3 ~~~DVvIIGa-G~~Gl~aA~~La~~G~~V~vlE~~ 36 (441)
..-.|+|.|+ |..|..++.+|.++|++|+.+.+.
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~r~ 54 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASDWK 54 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEEec
Confidence 3457999998 999999999999999999999875
No 489
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=84.01 E-value=1.1 Score=40.63 Aligned_cols=33 Identities=15% Similarity=0.378 Sum_probs=29.9
Q ss_pred ccEEEECCChhHHHHHhhhccCCC---eEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGK---KVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~---~V~vlE~~~ 37 (441)
-.|+|+|+|-+|..+|..|.+.|. ++.+++|+.
T Consensus 26 ~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 26 VKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 479999999999999999999996 599999974
No 490
>KOG1335|consensus
Probab=83.98 E-value=0.55 Score=45.25 Aligned_cols=38 Identities=21% Similarity=0.263 Sum_probs=35.9
Q ss_pred cEEEECCChhHHHHHhhhccCCCeEEEEcCCCCCCCcc
Q psy2620 6 DAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGES 43 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~~~GG~~ 43 (441)
..+|||+|..||-.+.--.|-|-+|+++|..+.+||..
T Consensus 213 ~~~viG~G~IGLE~gsV~~rLGseVT~VEf~~~i~~~m 250 (506)
T KOG1335|consen 213 KLTVIGAGYIGLEMGSVWSRLGSEVTVVEFLDQIGGVM 250 (506)
T ss_pred eEEEEcCceeeeehhhHHHhcCCeEEEEEehhhhcccc
Confidence 57899999999999999999999999999999999885
No 491
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=83.95 E-value=0.96 Score=45.86 Aligned_cols=33 Identities=18% Similarity=0.139 Sum_probs=30.9
Q ss_pred ccEEEECCChhHHHHHhhhccCCCeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G~~V~vlE~~~ 37 (441)
.+|-|||.|.-|...|..|+++|++|.+++++.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~~V~v~dr~~ 34 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGFKISVYNRTY 34 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCCeEEEEeCCH
Confidence 479999999999999999999999999999864
No 492
>PRK08328 hypothetical protein; Provisional
Probab=83.90 E-value=1.4 Score=40.28 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=29.0
Q ss_pred cccEEEECCChhHHHHHhhhccCC-CeEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~ 36 (441)
...|+|||+|-.|+.+|..|+++| .+++++|..
T Consensus 27 ~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 27 KAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 357999999999999999999999 578888753
No 493
>PRK05442 malate dehydrogenase; Provisional
Probab=83.80 E-value=1.3 Score=42.61 Aligned_cols=37 Identities=14% Similarity=0.057 Sum_probs=32.1
Q ss_pred CCCcccEEEECC-ChhHHHHHhhhccCCC-------eEEEEcCCC
Q psy2620 1 MDEEYDAIVLGT-GLKECILSGMLSVSGK-------KVLHIDRNK 37 (441)
Q Consensus 1 m~~~~DVvIIGa-G~~Gl~aA~~La~~G~-------~V~vlE~~~ 37 (441)
|.+...|.|||+ |..|.++|+.|...|. ++.++|.+.
T Consensus 1 ~~~~~KV~IiGaaG~VG~~~a~~l~~~~~~~~~~~~el~LiDi~~ 45 (326)
T PRK05442 1 MKAPVRVAVTGAAGQIGYSLLFRIASGDMLGKDQPVILQLLEIPP 45 (326)
T ss_pred CCCCcEEEEECCCcHHHHHHHHHHHhhhhcCCCCccEEEEEecCC
Confidence 777889999998 9999999999988774 789999754
No 494
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=83.77 E-value=1.5 Score=36.96 Aligned_cols=33 Identities=21% Similarity=0.347 Sum_probs=29.2
Q ss_pred ccEEEECCChhHHHHHhhhccCC-CeEEEEcCCC
Q psy2620 5 YDAIVLGTGLKECILSGMLSVSG-KKVLHIDRNK 37 (441)
Q Consensus 5 ~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~ 37 (441)
-.++|||+|..|...|..|++.| .+|.+++++.
T Consensus 20 ~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 20 KKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 46899999999999999999986 8999998753
No 495
>PLN03050 pyridoxine (pyridoxamine) 5'-phosphate oxidase; Provisional
Probab=83.73 E-value=1.1 Score=41.25 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.4
Q ss_pred EEEECCChh---HHHHHhhhccCCCeEEEEc
Q psy2620 7 AIVLGTGLK---ECILSGMLSVSGKKVLHID 34 (441)
Q Consensus 7 VvIIGaG~~---Gl~aA~~La~~G~~V~vlE 34 (441)
+|++|.|-| |+++|++|..+|++|.|+=
T Consensus 64 ~VlcG~GNNGGDGlv~AR~L~~~G~~V~v~~ 94 (246)
T PLN03050 64 LLVCGPGNNGGDGLVAARHLAHFGYEVTVCY 94 (246)
T ss_pred EEEECCCCCchhHHHHHHHHHHCCCeEEEEE
Confidence 466799988 7999999999999999875
No 496
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=83.64 E-value=1.1 Score=48.26 Aligned_cols=32 Identities=28% Similarity=0.188 Sum_probs=29.5
Q ss_pred cEEEECCChhHHHHHhhhc-cCCCeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLS-VSGKKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La-~~G~~V~vlE~~~ 37 (441)
.|.|||+|.-|...|..++ ++|++|+++|.+.
T Consensus 311 ~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~ 343 (708)
T PRK11154 311 KVGVLGGGLMGGGIAYVTATKAGLPVRIKDINP 343 (708)
T ss_pred EEEEECCchhhHHHHHHHHHHcCCeEEEEeCCH
Confidence 5899999999999999998 9999999999854
No 497
>PTZ00117 malate dehydrogenase; Provisional
Probab=83.62 E-value=1.4 Score=42.37 Aligned_cols=34 Identities=15% Similarity=0.154 Sum_probs=30.3
Q ss_pred cccEEEECCChhHHHHHhhhccCC-CeEEEEcCCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRNK 37 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~~ 37 (441)
...|.|||+|..|.++|..|+..| .++.++|.+.
T Consensus 5 ~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~~ 39 (319)
T PTZ00117 5 RKKISMIGAGQIGSTVALLILQKNLGDVVLYDVIK 39 (319)
T ss_pred CcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECCC
Confidence 457999999999999999999999 6899999865
No 498
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=83.59 E-value=1.1 Score=42.65 Aligned_cols=31 Identities=19% Similarity=0.349 Sum_probs=27.9
Q ss_pred EEEECCChhHHHHHhhhccCC--CeEEEEcCCC
Q psy2620 7 AIVLGTGLKECILSGMLSVSG--KKVLHIDRNK 37 (441)
Q Consensus 7 VvIIGaG~~Gl~aA~~La~~G--~~V~vlE~~~ 37 (441)
|.|||+|..|.++|+.|+..| ..++++|.+.
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~ 33 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE 33 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc
Confidence 579999999999999999999 6899999864
No 499
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=83.56 E-value=1.2 Score=43.30 Aligned_cols=32 Identities=13% Similarity=0.142 Sum_probs=29.2
Q ss_pred cEEEECCChhHHHHHhhhccCC--------CeEEEEcCCC
Q psy2620 6 DAIVLGTGLKECILSGMLSVSG--------KKVLHIDRNK 37 (441)
Q Consensus 6 DVvIIGaG~~Gl~aA~~La~~G--------~~V~vlE~~~ 37 (441)
+|.|||+|-.|.+.|..|+++| ++|.+..++.
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~~~ 40 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVFEE 40 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEecc
Confidence 4789999999999999999999 9999998744
No 500
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=83.47 E-value=1.4 Score=40.00 Aligned_cols=33 Identities=21% Similarity=0.301 Sum_probs=29.2
Q ss_pred cccEEEECCChhHHHHHhhhccCC-CeEEEEcCC
Q psy2620 4 EYDAIVLGTGLKECILSGMLSVSG-KKVLHIDRN 36 (441)
Q Consensus 4 ~~DVvIIGaG~~Gl~aA~~La~~G-~~V~vlE~~ 36 (441)
...|+|||.|-.|..+|..|++.| .+++++|..
T Consensus 21 ~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 21 NARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred CCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 468999999999999999999999 578888863
Done!