RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy2620
(441 letters)
>gnl|CDD|216232 pfam00996, GDI, GDP dissociation inhibitor.
Length = 439
Score = 753 bits (1947), Expect = 0.0
Identities = 312/441 (70%), Positives = 359/441 (81%), Gaps = 5/441 (1%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKF--GS 58
MDEEYD IVLGTGLKECILSG+LSV GKKVLHIDRN YYGGESAS++ LE+L+++F G
Sbjct: 1 MDEEYDVIVLGTGLKECILSGLLSVDGKKVLHIDRNDYYGGESASLS-LEQLYARFRGGE 59
Query: 59 TLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISK 118
P GR RDWNVDLIPKFLMANG LVKLLIHT VTRYLEFK+VEGSYV+KGGKI K
Sbjct: 60 EKPPSK-LGRSRDWNVDLIPKFLMANGELVKLLIHTDVTRYLEFKAVEGSYVYKGGKIHK 118
Query: 119 VPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLD 178
VP ++ EAL+S LMG+FEKRRFR FL Y+Q++ E DPKT ++P+ T ++Y KFGLD
Sbjct: 119 VPANEMEALSSPLMGIFEKRRFRKFLTYVQDYDEDDPKTHDGLDPRKRTMLEVYKKFGLD 178
Query: 179 PNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSF 238
NT DF GHALALYRDD+Y+N A+ T+ RIKLYS+SLARYGKSPYLYP+YGLGELPQ F
Sbjct: 179 ENTIDFIGHALALYRDDDYLNQPALPTVERIKLYSESLARYGKSPYLYPLYGLGELPQGF 238
Query: 239 ARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQV 297
ARLSAIYGGTYML+KPVDEIV ENGKVVGV+SG E+AR KQV CDPSY D+V+K+ QV
Sbjct: 239 ARLSAIYGGTYMLNKPVDEIVYDENGKVVGVKSGGEVARAKQVICDPSYFPDKVRKVGQV 298
Query: 298 IRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTV 357
IR IC++ HPIPNT DA S QIIIPQ QV RKSDIY+S SY H V KG +IA+VSTTV
Sbjct: 299 IRAICILSHPIPNTNDAGSVQIIIPQNQVGRKSDIYISCCSYAHNVCPKGKYIAIVSTTV 358
Query: 358 ETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDV 417
ET+NPE E+ PGLDLLG +KFV +SD YEPTD G+E QIFIS SYDATTHFET C DV
Sbjct: 359 ETENPESELAPGLDLLGPIDEKFVKISDLYEPTDDGSEDQIFISQSYDATTHFETTCNDV 418
Query: 418 VNLFKRGTGEDFDFSKIKLEE 438
+++FKR TG+ DFSK E
Sbjct: 419 LDIFKRYTGKALDFSKSPAAE 439
>gnl|CDD|185577 PTZ00363, PTZ00363, rab-GDP dissociation inhibitor; Provisional.
Length = 443
Score = 717 bits (1852), Expect = 0.0
Identities = 280/445 (62%), Positives = 348/445 (78%), Gaps = 8/445 (1%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKF--GS 58
MDE YD IV GTGLKECILSG+LSV+GKKVLH+DRN YYGGESAS+ L +L+ KF G
Sbjct: 1 MDETYDVIVCGTGLKECILSGLLSVNGKKVLHMDRNPYYGGESASLN-LTQLYKKFKPGE 59
Query: 59 TLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVF-KGGKIS 117
T P+ GR RDWNVDLIPKF+MA+G LVK+L+HT VTRYLEFK ++GSYV+ K GKI
Sbjct: 60 TPPES--LGRNRDWNVDLIPKFIMASGELVKILLHTDVTRYLEFKVIDGSYVYQKEGKIH 117
Query: 118 KVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGL 177
KVP EAL+S LMG FEK R +NFL Y+ + E DP+T K +N ++ T AQLY KFGL
Sbjct: 118 KVPATDMEALSSPLMGFFEKNRCKNFLQYVSNYDENDPETHKGLNLKTMTMAQLYKKFGL 177
Query: 178 DPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQS 237
+ NT DF GHA+ALY +D+Y+N AI T+ RIKLY DSL+RYGKSP++YP+YGLG LPQ+
Sbjct: 178 EDNTIDFVGHAVALYTNDDYLNKPAIETVMRIKLYMDSLSRYGKSPFIYPLYGLGGLPQA 237
Query: 238 FARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRS-GTEIARCKQVYCDPSYVQDRVKKLN 295
F+RL AIYGGTYML+ PVDE+V ENGKV GV+S G E+A+CK V CDPSY D+VKK+
Sbjct: 238 FSRLCAIYGGTYMLNTPVDEVVFDENGKVCGVKSEGGEVAKCKLVICDPSYFPDKVKKVG 297
Query: 296 QVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVST 355
+VIRCIC+++HPIPNT +A SCQIIIPQKQ+ RK+DIY+ LVS H V KG +IA++ST
Sbjct: 298 KVIRCICILNHPIPNTNNANSCQIIIPQKQLGRKNDIYIMLVSSNHGVCPKGKYIAIIST 357
Query: 356 TVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCT 415
TVET+NPE EI+P L LLG ++KFV++SD YEPT+ G + IFIS SYDAT+HFE+
Sbjct: 358 TVETNNPEKEIEPALKLLGPIEEKFVSISDLYEPTEDGKKDNIFISKSYDATSHFESATE 417
Query: 416 DVVNLFKRGTGEDFDFSKIKLEEEA 440
DV++L+KR TG+D D + I +
Sbjct: 418 DVLDLYKRITGKDLDLTNIPETADE 442
>gnl|CDD|227377 COG5044, MRS6, RAB proteins geranylgeranyltransferase component A
(RAB escort protein) [Posttranslational modification,
protein turnover, chaperones].
Length = 434
Score = 381 bits (980), Expect = e-130
Identities = 191/437 (43%), Positives = 262/437 (59%), Gaps = 14/437 (3%)
Query: 1 MDEE--YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGS 58
MDEE YD I+LGTGL+E ILS LS GK VLHID+N YYG SAS+T L +L F
Sbjct: 1 MDEETLYDVIILGTGLRESILSAALSWDGKNVLHIDKNDYYGSTSASLT-LTQLEKYFDE 59
Query: 59 TLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISK 118
G RD N+DLIPKFL AN L+K+LI TGVT YLEFK + GS++++ GKI K
Sbjct: 60 CEKRPSKGGGDRDLNIDLIPKFLFANSELLKILIETGVTEYLEFKQISGSFLYRPGKIYK 119
Query: 119 VPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLD 178
VP ++ E S L+ LFEKRR FL ++ + T +++ T L++KFGL
Sbjct: 120 VPYNEAEIFTSPLLSLFEKRRVMRFLKWVSNY-AEQKSTLQELYESKDTMEFLFEKFGLS 178
Query: 179 PNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSF 238
T++F GH +AL D ++ A + RI Y S YGKSPYLYP YGLGEL Q F
Sbjct: 179 GATEEFIGHGIALSLD---LDIPAREALERILRYMRSFGDYGKSPYLYPRYGLGELSQGF 235
Query: 239 ARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQ-- 296
AR SA+YGGTYML++ +DEI E V V G+ + ++ P+Y ++ K + Q
Sbjct: 236 ARSSAVYGGTYMLNQAIDEIN-ETKDVETVDKGSLTQKAGKIISSPTYFREDSKSVGQFY 294
Query: 297 -VIRCIC-LMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVS 354
+IR IC L+ HP+P T S QII P + RK+DI V+ + +V +G+++A +S
Sbjct: 295 RIIRAICILLVHPVPFTTGLDSLQIIFPPFSLKRKNDIQVAGLGSGSEVCPEGYYLAYIS 354
Query: 355 TTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVC 414
T ET PE EI L+LLG +KFV V + Y+P +Q+++S S D ++HFE++
Sbjct: 355 TIDETPTPEDEILAALELLGPSVEKFVDVEEIYQPD--EDTNQVYLSDSVDESSHFESLT 412
Query: 415 TDVVNLFKRGTGEDFDF 431
++ ++KR TG F
Sbjct: 413 YEIKGIYKRFTGTPLVF 429
>gnl|CDD|224154 COG1233, COG1233, Phytoene dehydrogenase and related proteins
[Secondary metabolites biosynthesis, transport, and
catabolism].
Length = 487
Score = 44.7 bits (106), Expect = 7e-05
Identities = 59/315 (18%), Positives = 99/315 (31%), Gaps = 60/315 (19%)
Query: 3 EEYDAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESASITPLEELFSKFG 57
YD +V+G GL +G+ L+ +G KV +++N GG + + EL
Sbjct: 2 PMYDVVVIGAGL-----NGLAAAALLARAGLKVTVLEKNDRVGGRART----FEL----- 47
Query: 58 STLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGG--- 114
D F G W +LM + + + L+ + +Y
Sbjct: 48 ----DGFRFDTGPSW-------YLMPDPGPLFRELGNLDADGLDLLPPDPAYRVFLPDGD 96
Query: 115 --KISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEAD-----PKTWKDINPQSAT 167
+ E L S G + +L + E ++ T
Sbjct: 97 AIDVYTDLEATAELLESLEPG--DGEALARYLRLLARLYELLAALLLAPPRSELLLVPDT 154
Query: 168 TAQLYDKFGLDPNTKDFTGHALALYRDDE---YINDLAIHTIRRIK-------LYSDSLA 217
+L G + + + A++ L S
Sbjct: 155 PERLLRLLGFS--LTSALDFFRGRFGSELLRALLAYSAVYGGAPPSTPPALYLLLSHLGL 212
Query: 218 RYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGT-EIAR 276
G YP G+G L + A L+ +GG V +I++E GK VGVR+ E
Sbjct: 213 SGG---VFYPRGGMGALVDALAELAREHGGEIRTGAEVSQILVEGGKGVGVRTSDGENIE 269
Query: 277 CKQVYC--DPSYVQD 289
V DP+ +
Sbjct: 270 ADAVVSNADPALLAR 284
>gnl|CDD|233988 TIGR02734, crtI_fam, phytoene desaturase. Phytoene is converted to
lycopene by desaturation at four (two symmetrical pairs
of) sites. This is achieved by two enzymes (crtP and
crtQ) in cyanobacteria (Gloeobacter being an exception)
and plants, but by a single enzyme in most other
bacteria and in fungi. This single enzyme is called the
bacterial-type phytoene desaturase, or CrtI. Most
members of this family, part of the larger Pfam family
pfam01593, which also contains amino oxidases, are CrtI
itself; it is likely that all members act on either
phytoene or on related compounds such as
dehydrosqualene, for carotenoid biosynthesis
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 502
Score = 39.2 bits (92), Expect = 0.004
Identities = 14/48 (29%), Positives = 20/48 (41%)
Query: 226 YPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTE 273
+P G G L + A+L+ GG L+ V I E G+ V
Sbjct: 213 FPRGGTGALVAAMAKLAEDLGGELRLNAEVIRIETEGGRATAVHLADG 260
>gnl|CDD|224169 COG1249, Lpd, Pyruvate/2-oxoglutarate dehydrogenase complex,
dihydrolipoamide dehydrogenase (E3) component, and
related enzymes [Energy production and conversion].
Length = 454
Score = 35.6 bits (83), Expect = 0.046
Identities = 12/47 (25%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSV------SGKKVLHIDRNKYYGG 41
M +EYD +V+G G G KV +++ + GG
Sbjct: 1 MMKEYDVVVIGAG------PAGYVAAIRAAQLGLKVALVEKGERLGG 41
>gnl|CDD|235977 PRK07233, PRK07233, hypothetical protein; Provisional.
Length = 434
Score = 34.5 bits (80), Expect = 0.097
Identities = 24/72 (33%), Positives = 27/72 (37%), Gaps = 7/72 (9%)
Query: 216 LARYGKSPYLYPMYGLGELPQSFARL-----SAIY--GGTYMLDKPVDEIVIENGKVVGV 268
+ R G Y LG L FA L AI GG L PV +VI+ G V GV
Sbjct: 175 IKRRGNRRYSLFGEKLGYLEGGFATLIDALAEAIEARGGEIRLGTPVTSVVIDGGGVTGV 234
Query: 269 RSGTEIARCKQV 280
E V
Sbjct: 235 EVDGEEEDFDAV 246
>gnl|CDD|180907 PRK07251, PRK07251, pyridine nucleotide-disulfide oxidoreductase;
Provisional.
Length = 438
Score = 34.3 bits (79), Expect = 0.13
Identities = 17/45 (37%), Positives = 25/45 (55%), Gaps = 1/45 (2%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKY-YGGESASI 46
YD IV+G G L+ L+ +GKKV ++ +K YGG +I
Sbjct: 2 LTYDLIVIGFGKAGKTLAAKLASAGKKVALVEESKAMYGGTCINI 46
>gnl|CDD|131777 TIGR02730, carot_isom, carotene isomerase. Members of this family,
including sll0033 (crtH) of Synechocystis sp. PCC 6803,
catalyze a cis-trans isomerization of carotenes to the
all-trans lycopene, a reaction that can also occur
non-enzymatically in light through photoisomerization
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Other].
Length = 493
Score = 33.6 bits (77), Expect = 0.19
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 226 YPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR-SGTEIARCKQV 280
YP G+G++ +S + +GG V +I++ENGK VGV+ + E K++
Sbjct: 223 YPKGGVGQIAESLVKGLEKHGGQIRYRARVTKIILENGKAVGVKLADGEKIYAKRI 278
Score = 32.9 bits (75), Expect = 0.35
Identities = 25/89 (28%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLP--D 62
YDAIV+G+G+ + + L+V G KVL ++R GG + F + G
Sbjct: 1 YDAIVIGSGIGGLVTATQLAVKGAKVLVLERYLIPGGSAG-------YFEREGYRFDVGA 53
Query: 63 EVTFGRGRDWNVDLIPKFLMANGSLVKLL 91
+ FG G +L+ + L A G ++ +
Sbjct: 54 SMIFGFGDKGTTNLLTRALAAVGRKLETI 82
>gnl|CDD|240384 PTZ00367, PTZ00367, squalene epoxidase; Provisional.
Length = 567
Score = 33.3 bits (76), Expect = 0.27
Identities = 12/32 (37%), Positives = 21/32 (65%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDR 35
+YD I++G + +L+ LS G+KVL ++R
Sbjct: 33 DYDVIIVGGSIAGPVLAKALSKQGRKVLMLER 64
>gnl|CDD|216593 pfam01593, Amino_oxidase, Flavin containing amine oxidoreductase.
This family consists of various amine oxidases,
including maze polyamine oxidase (PAO) and various
flavin containing monoamine oxidases (MAO). The aligned
region includes the flavin binding site of these
enzymes. The family also contains phytoene
dehydrogenases and related enzymes. In vertebrates MAO
plays an important role regulating the intracellular
levels of amines via there oxidation; these include
various neurotransmitters, neurotoxins and trace amines.
In lower eukaryotes such as aspergillus and in bacteria
the main role of amine oxidases is to provide a source
of ammonium. PAOs in plants, bacteria and protozoa
oxidase spermidine and spermine to an aminobutyral,
diaminopropane and hydrogen peroxide and are involved in
the catabolism of polyamines. Other members of this
family include tryptophan 2-monooxygenase, putrescine
oxidase, corticosteroid binding proteins and
antibacterial glycoproteins.
Length = 444
Score = 32.9 bits (75), Expect = 0.31
Identities = 37/198 (18%), Positives = 55/198 (27%), Gaps = 19/198 (9%)
Query: 97 TRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQ------EF 150
++ K G Y G + P+ +L E+ R L+ + E
Sbjct: 75 DPFVRLKYRGGPYPDLPGDL-PPPLFLLLRSLLELELSLEEPIRRALLLLVALLLLAPEL 133
Query: 151 SEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIK 210
E D ++ D+ + F AL + E LA+ ++R
Sbjct: 134 LELDLLSFSDLLSAAGFLELFLLLFR------SLLAGAL-GFLPLELSARLALLSLR--- 183
Query: 211 LYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRS 270
D P LG LPQ A + GG L+ V I V
Sbjct: 184 -LFDLEDGGVVFPGGGFTLPLGGLPQLIAAALGLLGGRVRLNTRVRSITKSGDGVTVTTV 242
Query: 271 GTEIARCKQV-YCDPSYV 287
V P V
Sbjct: 243 DGRTIEADAVIVTVPLGV 260
>gnl|CDD|182273 PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.
Length = 428
Score = 33.0 bits (75), Expect = 0.31
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 6/69 (8%)
Query: 1 MDEE-YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS-----ITPLEELFS 54
M E+ +DAI++G GL + + +L+ G +VL I+R G ++ + LE +
Sbjct: 1 MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIP 60
Query: 55 KFGSTLPDE 63
F + P E
Sbjct: 61 GFADSAPVE 69
>gnl|CDD|232791 TIGR00031, UDP-GALP_mutase, UDP-galactopyranose mutase. This
enzyme is involved in the conversion of UDP-GALP into
UDP-GALF through a 2-keto intermediate. It contains FAD
as a cofactor. The gene is known as glf, ceoA, and
rfbD. It is known experimentally in E. coli,
Mycobacterium tuberculosis, and Klebsiella pneumoniae
[Cell envelope, Biosynthesis and degradation of surface
polysaccharides and lipopolysaccharides].
Length = 377
Score = 32.8 bits (75), Expect = 0.31
Identities = 12/37 (32%), Positives = 24/37 (64%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41
+D I++G GL +L+ +L+ K+VL +++ + GG
Sbjct: 2 FDYIIVGAGLSGIVLANILAQLNKRVLVVEKRNHIGG 38
>gnl|CDD|235362 PRK05192, PRK05192, tRNA uridine 5-carboxymethylaminomethyl
modification enzyme GidA; Validated.
Length = 618
Score = 33.1 bits (77), Expect = 0.35
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 3/28 (10%)
Query: 255 VDEIVIENGKVVGVR--SGTEIARCKQV 280
V+++++ENG+VVGV G E R K V
Sbjct: 123 VEDLIVENGRVVGVVTQDGLEF-RAKAV 149
>gnl|CDD|182194 PRK10015, PRK10015, oxidoreductase; Provisional.
Length = 429
Score = 32.6 bits (74), Expect = 0.39
Identities = 18/67 (26%), Positives = 36/67 (53%), Gaps = 5/67 (7%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS-----ITPLEELFSKF 56
D+++DAIV+G G+ + + +++ +G VL I+R G ++ + LE + F
Sbjct: 3 DDKFDAIVVGAGVAGSVAALVMARAGLDVLVIERGDSAGCKNMTGGRLYAHTLEAIIPGF 62
Query: 57 GSTLPDE 63
++ P E
Sbjct: 63 AASAPVE 69
>gnl|CDD|221837 pfam12895, Apc3, Anaphase-promoting complex, cyclosome, subunit 3.
Apc3, otherwise known as Cdc27, is one of the subunits
of the anaphase-promoting complex or cyclosome. The
anaphase-promoting complex is a multiprotein subunit E3
ubiquitin ligase complex that controls segregation of
chromosomes and exit from mitosis in eukaryotes. The
protein members of this family contain TPR repeats just
as those of Apc7 do, and it appears that these TPR units
bind the C-termini of the APC co-activators CDH1 and
CDC20.
Length = 80
Score = 29.9 bits (68), Expect = 0.48
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
Query: 171 LYDK-FGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARY 219
L +K L P+ +D A + +Y A +R++KL + S RY
Sbjct: 11 LAEKLLALTPSNEDAYLLAQCYFLQGQY--KRAYELLRKLKLDNSSGCRY 58
>gnl|CDD|180419 PRK06134, PRK06134, putative FAD-binding dehydrogenase; Reviewed.
Length = 581
Score = 32.4 bits (74), Expect = 0.55
Identities = 22/73 (30%), Positives = 31/73 (42%), Gaps = 9/73 (12%)
Query: 203 IHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARL--SA-IYGGTYMLDKPVDEIV 259
+H RR + LAR+G+ +L L ARL SA G P E++
Sbjct: 191 LHVARRFARHLIDLARHGRGMHLVNGNAL------VARLLKSAEDLGVRIWESAPARELL 244
Query: 260 IENGKVVGVRSGT 272
E+G+V G T
Sbjct: 245 REDGRVAGAVVET 257
>gnl|CDD|183020 PRK11180, rluD, 23S rRNA pseudouridine synthase D; Provisional.
Length = 325
Score = 31.2 bits (71), Expect = 1.2
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 14 LKECILSGMLSVSGKKVLHIDRNKYYGGESASI 46
+KE IL + V+G KV++ + K GGE +I
Sbjct: 36 IKEWILDQRVLVNG-KVINKPKEKVLGGEQVAI 67
>gnl|CDD|223636 COG0562, Glf, UDP-galactopyranose mutase [Cell envelope
biogenesis, outer membrane].
Length = 374
Score = 30.8 bits (70), Expect = 1.5
Identities = 10/37 (27%), Positives = 24/37 (64%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41
+D +++G GL +++ + + GK+VL +++ + GG
Sbjct: 2 FDYLIVGAGLSGAVIAEVAAQLGKRVLIVEKRNHIGG 38
>gnl|CDD|214575 smart00234, START, in StAR and phosphatidylcholine transfer
protein. putative lipid-binding domain in StAR and
phosphatidylcholine transfer protein.
Length = 205
Score = 30.1 bits (68), Expect = 1.7
Identities = 8/30 (26%), Positives = 11/30 (36%)
Query: 337 VSYTHQVSAKGWFIAMVSTTVETDNPELEI 366
V Y + + + VS T T PE
Sbjct: 112 VRYWREDEDGSYAVVDVSVTHPTSPPESGY 141
>gnl|CDD|225186 COG2303, BetA, Choline dehydrogenase and related flavoproteins
[Amino acid transport and metabolism].
Length = 542
Score = 30.5 bits (69), Expect = 2.0
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDR 35
M EYD +++G+G +L+ LS +G VL ++
Sbjct: 4 MKMEYDYVIVGSGSAGSVLAARLSDAGLSVLVLEA 38
>gnl|CDD|183782 PRK12834, PRK12834, putative FAD-binding dehydrogenase; Reviewed.
Length = 549
Score = 29.9 bits (68), Expect = 2.8
Identities = 9/15 (60%), Positives = 12/15 (80%)
Query: 255 VDEIVIENGKVVGVR 269
VDE+V+ +G V GVR
Sbjct: 175 VDELVVTDGAVTGVR 189
Score = 28.7 bits (65), Expect = 6.7
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHID 34
M + D IV+G GL + + L+ +GK+VL +D
Sbjct: 1 MAMDADVIVVGAGLAGLVAAAELADAGKRVLLLD 34
>gnl|CDD|240672 cd12226, RRM_NOL8, RNA recognition motif in nucleolar protein 8
(NOL8) and similar proteins. This model corresponds to
the RRM of NOL8 (also termed Nop132) encoded by a novel
NOL8 gene that is up-regulated in the majority of
diffuse-type, but not intestinal-type, gastric cancers.
Thus, NOL8 may be a good molecular target for treatment
of diffuse-type gastric cancer. Also, NOL8 is a
phosphorylated protein that contains an N-terminal RNA
recognition motif (RRM), also known as RBD (RNA binding
domain) or RNP (ribonucleoprotein domain), suggesting
NOL8 is likely to function as a novel RNA-binding
protein. It may be involved in regulation of gene
expression at the post-transcriptional level or in
ribosome biogenesis in cancer cells.
Length = 78
Score = 27.5 bits (62), Expect = 2.9
Identities = 13/29 (44%), Positives = 18/29 (62%), Gaps = 2/29 (6%)
Query: 38 YYGGESASITP--LEELFSKFGSTLPDEV 64
+ GG S S+T LEE FS+FG+ E+
Sbjct: 3 FVGGLSPSVTESDLEERFSRFGTVSDVEI 31
>gnl|CDD|237225 PRK12843, PRK12843, putative FAD-binding dehydrogenase; Reviewed.
Length = 578
Score = 29.7 bits (67), Expect = 3.4
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 10/48 (20%)
Query: 2 DEEYDAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESA 44
D E+D IV+G G +GM +++G KVL ++R +Y GG +A
Sbjct: 14 DAEFDVIVIGAGA-----AGMSAALFAAIAGLKVLLVERTEYVGGTTA 56
>gnl|CDD|236887 PRK11259, solA, N-methyltryptophan oxidase; Provisional.
Length = 376
Score = 29.4 bits (67), Expect = 3.4
Identities = 13/41 (31%), Positives = 17/41 (41%), Gaps = 14/41 (34%)
Query: 2 DEEYDAIVLGTGLKECILSGM-------LSVSGKKVLHIDR 35
YD IV+G G M L+ G +VL +DR
Sbjct: 1 TMRYDVIVIGLG-------SMGSAAGYYLARRGLRVLGLDR 34
>gnl|CDD|113799 pfam05042, Caleosin, Caleosin related protein. This family
contains plant proteins related to caleosin. Caleosins
contain calcium-binding domains and have an oleosin-like
association with lipid bodies. Caleosins are present at
relatively low levels and are mainly bound to microsomal
membrane fractions at the early stages of seed
development. As the seeds mature, overall levels of
caleosins increased dramatically and they were
associated almost exclusively with storage lipid bodies.
This family is probably related to EF hands pfam00036.
Length = 174
Score = 28.9 bits (65), Expect = 3.4
Identities = 10/19 (52%), Positives = 13/19 (68%)
Query: 49 LEELFSKFGSTLPDEVTFG 67
EE+FSK+ T PD +T G
Sbjct: 98 FEEIFSKYARTHPDALTLG 116
>gnl|CDD|148624 pfam07124, Phytoreo_P8, Phytoreovirus outer capsid protein P8.
This family consists of several Phytoreovirus outer
capsid protein P8 sequences.
Length = 426
Score = 29.5 bits (66), Expect = 3.7
Identities = 42/184 (22%), Positives = 67/184 (36%), Gaps = 35/184 (19%)
Query: 198 INDLAIHTIRRIKLYSDSLA--RYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDK-- 253
+N+L++ + KLYS A + PY P+ P R +A G Y +
Sbjct: 119 VNNLSLQPSAKPKLYSRQNAIMKALDIPYSTPID-----PCKLFRSTAGQTGNYPQRRAL 173
Query: 254 ---------PVDEIVIENGKVV-GVRSGTEIARCKQVYCDPSYVQD------RVKKLNQV 297
VD V E +++ G RS I + P++ RV N
Sbjct: 174 ATPLGGGAQQVDFFVAERDRIIFGRRSLNAIPAGQYQINVPAWWSVLSVTNARVYFTNSF 233
Query: 298 IRC-ICLMDHPIPNTKDALSCQIIIP--QKQVNRKSDIYVSL------VSYTHQVSAKGW 348
+ C I + N D ++ I +P + SD VS ++ T V G+
Sbjct: 234 LGCTITNVQVNAANGADPVA-TITVPTDANDLPVDSDSIVSFSLSGGNINVTTAVPLTGF 292
Query: 349 FIAM 352
IA+
Sbjct: 293 AIAI 296
>gnl|CDD|237224 PRK12842, PRK12842, putative succinate dehydrogenase; Reviewed.
Length = 574
Score = 29.7 bits (67), Expect = 3.7
Identities = 23/95 (24%), Positives = 35/95 (36%), Gaps = 22/95 (23%)
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDS--LARYGKSPYLYPMYGLGELPQSF 238
T+ T R ++ DLA++ R ++ S + AR KS +
Sbjct: 181 TRSLTSFIYVAKRLATHLKDLALYR-RGTQVTSGNALAARLAKS--------------AL 225
Query: 239 ARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTE 273
I GT P E++ E G+VVG R
Sbjct: 226 DLGIPILTGT-----PARELLTEGGRVVGARVIDA 255
>gnl|CDD|226103 COG3573, COG3573, Predicted oxidoreductase [General function
prediction only].
Length = 552
Score = 29.4 bits (66), Expect = 3.8
Identities = 12/33 (36%), Positives = 20/33 (60%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDR 35
D IV+G GL + + L+ +GK+VL +D+
Sbjct: 4 LTADVIVVGAGLAGLVAAAELADAGKRVLILDQ 36
>gnl|CDD|234819 PRK00711, PRK00711, D-amino acid dehydrogenase small subunit;
Validated.
Length = 416
Score = 29.0 bits (66), Expect = 5.3
Identities = 11/39 (28%), Positives = 23/39 (58%)
Query: 236 QSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEI 274
Q A ++ G + + PVD +++E G++ GV++G +
Sbjct: 205 QRLAAMAEQLGVKFRFNTPVDGLLVEGGRITGVQTGGGV 243
>gnl|CDD|235787 PRK06370, PRK06370, mercuric reductase; Validated.
Length = 463
Score = 29.0 bits (66), Expect = 5.7
Identities = 13/36 (36%), Positives = 18/36 (50%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRN 36
+ YDAIV+G G L+ + G KV I+R
Sbjct: 2 PAQRYDAIVIGAGQAGPPLAARAAGLGMKVALIERG 37
>gnl|CDD|235868 PRK06826, dnaE, DNA polymerase III DnaE; Reviewed.
Length = 1151
Score = 29.1 bits (66), Expect = 6.0
Identities = 10/29 (34%), Positives = 16/29 (55%)
Query: 412 TVCTDVVNLFKRGTGEDFDFSKIKLEEEA 440
TV D V+L K+ G + D KI +++
Sbjct: 558 TVIRDAVDLIKKNRGIEIDLDKIDYDDKK 586
>gnl|CDD|239993 cd04621, CBS_pair_8, The CBS domain, named after human CBS, is a
small domain originally identified in cystathionine
beta-synthase and is subsequently found in a wide range
of different proteins. CBS domains usually occur in
tandem repeats. They associate to form a so-called
Bateman domain or a CBS pair based on crystallographic
studies in bacteria. The CBS pair was used as a basis
for this cd hierarchy since the human CBS proteins can
adopt the typical core structure and form an
intramolecular CBS pair. The interface between the two
CBS domains forms a cleft that is a potential ligand
binding site. The CBS pair coexists with a variety of
other functional domains and this has been used to help
in its classification here. It has been proposed that
the CBS domain may play a regulatory role, although its
exact function is unknown. Mutations of conserved
residues within this domain are associated with a
variety of human hereditary diseases, including
congenital myotonia, idiopathic generalized epilepsy,
hypercalciuric nephrolithiasis, and classic Bartter
syndrome (CLC chloride channel family members),
Wolff-Parkinson-White syndrome (gamma 2 subunit of
AMP-activated protein kinase), retinitis pigmentosa (IMP
dehydrogenase-1), and homocystinuria (cystathionine
beta-synthase).
Length = 135
Score = 27.4 bits (61), Expect = 7.8
Identities = 10/28 (35%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Query: 250 MLDKPVDEI-VIENGKVVGVRSGTEIAR 276
ML+ + + V++N +VGV + T+I R
Sbjct: 107 MLEANISGLPVVDNDNIVGVITKTDICR 134
>gnl|CDD|233186 TIGR00920, 2A060605, 3-hydroxy-3-methylglutaryl-coenzyme A
reductase. [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 889
Score = 28.7 bits (64), Expect = 7.9
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 233 ELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVR 269
E+ + AR AI G T LD V+ +VI G + GVR
Sbjct: 152 EVRDNIARGMAILGPTITLDTVVETLVIGVGTMSGVR 188
>gnl|CDD|130208 TIGR01138, cysM, cysteine synthase B. CysM differs from CysK in
that it can also use thiosulfate instead of sulfide, to
produce cysteine thiosulfonate instead of cysteine.
Alternate name: O-acetylserine (thiol)-lyase [Amino acid
biosynthesis, Serine family].
Length = 290
Score = 28.3 bits (63), Expect = 8.4
Identities = 17/86 (19%), Positives = 33/86 (38%), Gaps = 15/86 (17%)
Query: 207 RRIKLYSDSLARYGKSP-YLYPMYGLGELPQSFARLSAIYGGTYMLDKPVD--------- 256
R +K + + G P + G+ P + L I+ + +D+ +D
Sbjct: 182 RFLKEQNPPVQIVGLQPEEGSSIPGIRRWPTEY--LPGIFDASL-VDRVLDIHQRDAENT 238
Query: 257 --EIVIENGKVVGVRSGTEIARCKQV 280
E+ + G GV SG +A ++
Sbjct: 239 MRELAVREGIFCGVSSGGAVAAALRL 264
>gnl|CDD|235967 PRK07208, PRK07208, hypothetical protein; Provisional.
Length = 479
Score = 28.3 bits (64), Expect = 8.5
Identities = 11/45 (24%), Positives = 20/45 (44%)
Query: 224 YLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGV 268
+ YP G G+L ++ A GG +L+ V + + + V
Sbjct: 210 FRYPKLGPGQLWETAAEKLEALGGKVVLNAKVVGLHHDGDGRIAV 254
>gnl|CDD|222872 PHA02555, 14, neck protein; Provisional.
Length = 216
Score = 28.1 bits (63), Expect = 9.1
Identities = 10/16 (62%), Positives = 12/16 (75%)
Query: 51 ELFSKFGSTLPDEVTF 66
+ FSKFG + DEVTF
Sbjct: 77 DFFSKFGMQINDEVTF 92
>gnl|CDD|222114 pfam13416, SBP_bac_8, Bacterial extracellular solute-binding
protein. This family includes bacterial extracellular
solute-binding proteins.
Length = 281
Score = 28.1 bits (63), Expect = 9.3
Identities = 26/130 (20%), Positives = 44/130 (33%), Gaps = 18/130 (13%)
Query: 150 FSEADPKTWKDINPQSATTAQLYDKFGL-DPNTKDFTGHALALYRDDEYINDLAIHTIRR 208
+ADPKTW D+ + KFGL DP + LA D + +
Sbjct: 104 LEKADPKTWDDLL---DAAKAVKGKFGLPDPPSGFLLAALLADGVDFDDDGK----GVED 156
Query: 209 IKLYSDSLARYGKSPYLYPMYGLGELPQSFA--RLSAIYGGTYML------DKPVDEIVI 260
+K L + + Y + Q FA ++A G++ +
Sbjct: 157 LKKALAYLKKLKDNGKFYGTG--ADAIQLFADGEVAAYINGSWDAAAAKEAGDNLGAAAP 214
Query: 261 ENGKVVGVRS 270
++G G +
Sbjct: 215 KDGSFAGGKG 224
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.318 0.137 0.401
Gapped
Lambda K H
0.267 0.0671 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 23,002,991
Number of extensions: 2269760
Number of successful extensions: 1961
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1945
Number of HSP's successfully gapped: 53
Length of query: 441
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 341
Effective length of database: 6,502,202
Effective search space: 2217250882
Effective search space used: 2217250882
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (27.4 bits)