RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy2620
(441 letters)
>2bcg_G Secretory pathway GDP dissociation inhibitor; RABGTPase,
geranylgeranylation, vesicular transport, protein
transport; HET: GDP GER; 1.48A {Saccharomyces
cerevisiae} SCOP: c.3.1.3 c.3.1.3 d.16.1.6 PDB: 1ukv_G*
3cpi_G 3cph_G 3cpj_G*
Length = 453
Score = 492 bits (1268), Expect = e-173
Identities = 231/446 (51%), Positives = 318/446 (71%), Gaps = 8/446 (1%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFG--- 57
+D +YD IVLGTG+ ECILSG+LSV GKKVLHID+ +YGGE+AS+T L +L+ KF
Sbjct: 8 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVT-LSQLYEKFKQNP 66
Query: 58 -STLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKI 116
S E FG+ RDWNVDLIPKFLMANG L +LIHT VTRY++FK V GSYVFK GKI
Sbjct: 67 ISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKI 126
Query: 117 SKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFG 176
KVP ++ EA++S LMG+FEKRR + FL +I + E D T + ++ T ++Y KFG
Sbjct: 127 YKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFG 186
Query: 177 LDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQ 236
L +TK+F GHA+AL+ +D+Y+ A + RI LY S+ARYGKSPYLYPMYGLGELPQ
Sbjct: 187 LGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQ 246
Query: 237 SFARLSAIYGGTYMLDKPVDEIVI--ENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKL 294
FARLSAIYGGTYMLD P+DE++ + GK GV++ + V DP+Y ++ K
Sbjct: 247 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEKCKST 306
Query: 295 -NQVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMV 353
+VIR IC+++HP+PNT +A S QIIIPQ Q+ RKSDIYV++VS H V +KG ++A++
Sbjct: 307 GQRVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAII 366
Query: 354 STTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETV 413
ST +ETD P +E++P LLG ++KF+ +++ +EP + G++ I++S SYDA++HFE++
Sbjct: 367 STIIETDKPHIELEPAFKLLGPIEEKFMGIAELFEPREDGSKDNIYLSRSYDASSHFESM 426
Query: 414 CTDVVNLFKRGTGEDFDFSKIKLEEE 439
DV +++ R TG + + +E+
Sbjct: 427 TDDVKDIYFRVTGHPLVLKQRQEQEK 452
>1d5t_A Guanine nucleotide dissociation inhibitor; ultra-high resolution,
hydrolase inhibitor; 1.04A {Bos taurus} SCOP: c.3.1.3
d.16.1.6 PDB: 1lv0_A* 1gnd_A
Length = 433
Score = 489 bits (1259), Expect = e-172
Identities = 291/431 (67%), Positives = 350/431 (81%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
T GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 63 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 242
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSYV DRV+K QVIR
Sbjct: 243 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRVRKAGQVIRI 302
Query: 301 ICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETD 360
IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA+ STTVET
Sbjct: 303 ICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIAIASTTVETT 362
Query: 361 NPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTHFETVCTDVVNL 420
+PE E++P L LL +KFV +SD YEP D G+ESQ+F S SYDATTHFET C D+ ++
Sbjct: 363 DPEKEVEPALGLLEPIDQKFVAISDLYEPIDDGSESQVFCSCSYDATTHFETTCNDIKDI 422
Query: 421 FKRGTGEDFDF 431
+KR G FDF
Sbjct: 423 YKRMAGSAFDF 433
>3p1w_A Rabgdi protein; GDI RAB, malaria, structural genomics consortium,
SGC, trans PF10_0345, protein transport; 1.85A
{Plasmodium falciparum 3D7}
Length = 475
Score = 463 bits (1193), Expect = e-162
Identities = 218/455 (47%), Positives = 301/455 (66%), Gaps = 15/455 (3%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
E YD I+LGTGLKECILSG+LS GKK+L +DRN YYGGE+AS+ L L++ F
Sbjct: 17 QGEHYDVIILGTGLKECILSGLLSHYGKKILVLDRNPYYGGETASLN-LTNLYNTFKPKE 75
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGK----- 115
+G R WNVDLIPKF++ G+LVK+L T VT YLE+ VEGSYV++ K
Sbjct: 76 NIPSKYGENRHWNVDLIPKFILVGGNLVKILKKTRVTNYLEWLVVEGSYVYQHQKKGFLT 135
Query: 116 ----ISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQL 171
I KVP EAL S L+ L EK R +NF Y+ E+ TW +++P T ++
Sbjct: 136 SEKFIHKVPATDMEALVSPLLSLMEKNRCKNFYQYVSEWDANKRNTWDNLDPYKLTMLEI 195
Query: 172 YDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGL 231
Y F L T DF GHA+ALY +D+Y+ A T+ RIKLY S++ +GKSP++YP+YGL
Sbjct: 196 YKHFNLCQLTIDFLGHAVALYLNDDYLKQPAYLTLERIKLYMQSISAFGKSPFIYPLYGL 255
Query: 232 GELPQSFARLSAIYGGTYMLDKPVDEIVI-ENGKVVGVRSG-TEIARCKQVYCDPSYV-- 287
G +P+ F+R+ AI GGT+ML+K V + V ++ KV G++S EIA C +V CDPSYV
Sbjct: 256 GGIPEGFSRMCAINGGTFMLNKNVVDFVFDDDNKVCGIKSSDGEIAYCDKVICDPSYVMH 315
Query: 288 -QDRVKKLNQVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAK 346
++++KK+ QVIRCIC++ +PIP T SCQIIIPQ Q+NRKSDIY++LVS+ H V+ K
Sbjct: 316 LKNKIKKIGQVIRCICILSNPIPETNQTNSCQIIIPQNQLNRKSDIYINLVSFQHGVTLK 375
Query: 347 GWFIAMVSTTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDA 406
G +IA+VS TVET+NP EI+ L+LLG+ ++KFV +SD Y T IF+++SYDA
Sbjct: 376 GKYIAIVSATVETNNPIKEIEKPLELLGTIEEKFVKISDLYVSTSKKPADNIFVTSSYDA 435
Query: 407 TTHFETVCTDVVNLFKRGTGEDFDFSKIKLEEEAS 441
T+HFET D++ +++ G+ +F + +
Sbjct: 436 TSHFETATNDLLQIWENLWGQKLNFDDLNTNADGE 470
>1vg0_A RAB proteins geranylgeranyltransferase component A 1; RAB
prenylation, post-translational modification, protein
binding/protein transport complex; HET: GER GDP PG4;
2.20A {Rattus norvegicus} SCOP: c.3.1.3 d.16.1.6 PDB:
1vg9_A* 1ltx_R*
Length = 650
Score = 375 bits (962), Expect = e-124
Identities = 92/440 (20%), Positives = 167/440 (37%), Gaps = 42/440 (9%)
Query: 26 SGKKVLHIDRNKYYGGESASITPLEELF----------SKFGSTLPDEVTFGRGRDWNVD 75
S +V + A + E + + + GR +N+D
Sbjct: 168 SSPEVNDAEATGKKENSDAKSSTEEPSENVPKVQDNTETPKKNRITYSQIIKEGRRFNID 227
Query: 76 LIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLF 135
L+ K L + G L+ LLI + V+RY EFK++ F+ G + +VP + + S + +
Sbjct: 228 LVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPCSRADVFNSKQLTMV 287
Query: 136 EKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDD 195
EKR FL + E+ E P ++ T ++ L PN + F H++A+ +
Sbjct: 288 EKRMLMKFLTFCVEY-EEHPDEYRAYEGT--TFSEYLKTQKLTPNLQYFVLHSIAMTSET 344
Query: 196 EYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPV 255
+ ++ K + L RYG +P+L+P+YG GELPQ F R+ A++GG Y L V
Sbjct: 345 TS---CTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRMCAVFGGIYCLRHSV 401
Query: 256 DEIVI--ENGKVVGVR-SGTEIARCKQVYCDPSYVQDRVKK---LNQVIRCICLMDHPIP 309
+V+ E+ K V + K + SY+ + Q+ R + + D +
Sbjct: 402 QCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTCSRVQYRQISRAVLITDGSVL 461
Query: 310 NTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVSTTVETDNPELEIKPG 369
T I+ + + V + + KG ++ ++ E +
Sbjct: 462 RTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTCMSSKTAREDLERVV 521
Query: 370 LDLLGSYKKKFVTVSDYYEPTDL-------------------GTESQIFISTSYDATTHF 410
L Y + +P L S +++ + D+
Sbjct: 522 QKLFTPYTEIEAENEQVEKPRLLWALYFNMRDSSDISRDCYNDLPSNVYVCSGPDSGLGN 581
Query: 411 ETVCTDVVNLFKRGTG-EDF 429
+ LF++ EDF
Sbjct: 582 DNAVKQAETLFQQICPNEDF 601
Score = 109 bits (273), Expect = 6e-26
Identities = 35/161 (21%), Positives = 59/161 (36%), Gaps = 10/161 (6%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
+ ++D IV+GTGL E I++ S SG++VLH+D YYGG AS + L S
Sbjct: 5 LPSDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS-FSGLLSWLKEYQ 63
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEF----KSVEGSYVFKGGKI 116
+ W ++ N + L +++E V + G +
Sbjct: 64 ENNDVVTENSMWQEQILE-----NEEAIPLSSKDKTIQHVEVFCYASQDLHKDVEEAGAL 118
Query: 117 SKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKT 157
K A +++ E + + S P
Sbjct: 119 QKNHASVTSAQSAEAAEAAETSCLPTAVEPLSMGSCEIPAE 159
>3ka7_A Oxidoreductase; structural genomics, PSI-2, protein structure
initiative, northeast structural genomics consortium,
NESG; HET: FAD; 1.80A {Methanosarcina mazei}
Length = 425
Score = 61.6 bits (150), Expect = 2e-10
Identities = 50/300 (16%), Positives = 93/300 (31%), Gaps = 70/300 (23%)
Query: 6 DAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESASIT---------PLEE 51
+V+G GL G+ LS +G +V +R GG +++
Sbjct: 2 KTVVIGAGL-----GGLLSAARLSKAGHEVEVFERLPITGGRFTNLSYKGFQLSSGAFHM 56
Query: 52 LFSKFGSTLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVF 111
L + G L F + + +V+++ + + V++ + G Y++ F
Sbjct: 57 LPNGPGGPLAC---FLKEVEASVNIVR----SEMTTVRVPLKKGNPDYVKG--------F 101
Query: 112 KGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDIN-PQSATTAQ 170
K F + L Y A N P ++
Sbjct: 102 KD---------------------ISFNDFPSLLSYKDRMKIALLIVSTRKNRPSGSSLQA 140
Query: 171 LYDKFGLDPNTK----DFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLY 226
D F G AL+L D+ + ++ + G
Sbjct: 141 WIKSQVSDEWLIKFADSFCGWALSLKSDE-------VPVEEVFEIIENMYRFGG---TGI 190
Query: 227 PMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSY 286
P G + + + + GG + V +I+IENGK G+ + I V + +
Sbjct: 191 PEGGCKGIIDALETVISANGGKIHTGQEVSKILIENGKAAGIIADDRIHDADLVISNLGH 250
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 60.4 bits (146), Expect = 7e-10
Identities = 88/556 (15%), Positives = 155/556 (27%), Gaps = 230/556 (41%)
Query: 18 ILS-GMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFGRGRDW---- 72
LS G L L + ++ +L +F LP E T G D
Sbjct: 10 TLSHGSLEHV----LLVPTASFF--------IASQLQEQFNKILP-EPTEGFAADDEPTT 56
Query: 73 NVDLIPKFLM---------ANGSLVKLL----------------IHTGV--------TRY 99
+L+ KFL G ++L IH T
Sbjct: 57 PAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHALAAKLLQENDTTL 116
Query: 100 LEFKSVEGSYVFKGGKISKVPVDQKE--AL---ASD----LMGLFEKRRFR----NFLVY 146
++ K + +Y ++K P D+K AL + L+ +F N Y
Sbjct: 117 VKTKELIKNY-ITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIF------GGQGNTDDY 169
Query: 147 IQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTI 206
+E + LY + D + E +++L T+
Sbjct: 170 FEELRD------------------LYQTYH--VLVGDLIKFS------AETLSELIRTTL 203
Query: 207 RRIKLYSDS------LARYGKSP---YL------YPMYGLGELPQSFARLSAIYGGTYML 251
K+++ L +P YL P+ G+ +L + + + G T
Sbjct: 204 DAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAH-YVVTAKLLGFT--- 259
Query: 252 DKPVDEIVIENGKVV---GVRSGTEIA------------------------RCKQVYC-- 282
P + G G+ + IA RC + Y
Sbjct: 260 --PGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNT 317
Query: 283 --DPSYVQDRVKKLNQVIRCICLMDHPIPN--------TKDALSCQIIIPQKQVNRK--- 329
PS ++D ++ + +P+ T++ + + + N
Sbjct: 318 SLPPSILEDSLEN-----------NEGVPSPMLSISNLTQEQVQDYV----NKTNSHLPA 362
Query: 330 -SDIYVSLV-SYTHQV------SAKGWFIAMVSTTVETDNPELEIKPGLD---LLGSYKK 378
+ +SLV + V S G ++ T+ + + GLD + S +K
Sbjct: 363 GKQVEISLVNGAKNLVVSGPPQSLYG-----LNLTLR----KAKAPSGLDQSRIPFSERK 413
Query: 379 -KF------VTV---SDYYEPT------DLGTESQIFISTS-----YDATT--------- 408
KF V S P DL + F + YD
Sbjct: 414 LKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVYDTFDGSDLRVLSG 473
Query: 409 -----HFETVCTDVVN 419
+ + V
Sbjct: 474 SISERIVDCIIRLPVK 489
Score = 43.5 bits (102), Expect = 2e-04
Identities = 45/255 (17%), Positives = 69/255 (27%), Gaps = 86/255 (33%)
Query: 67 GRGRD-----------WN-VDLIPKFLMAN-G-SLVKLLIHTGVTRYLEFKSVEGSYVFK 112
G G D WN D G S++ ++I+ V + F
Sbjct: 1630 GMGMDLYKTSKAAQDVWNRAD---NHFKDTYGFSILDIVINNPVNLTIHF---------- 1676
Query: 113 GGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDI----------- 161
GG+ K + + + + L + F E + +
Sbjct: 1677 GGEKGK-------RIRENYSAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSAT 1729
Query: 162 -NPQSA--TT--AQLYD--KFGLDPNTKDFTGHALALYRDDEY-----------INDLAI 203
Q A A D GL P F GH+L EY I +
Sbjct: 1730 QFTQPALTLMEKAAFEDLKSKGLIPADATFAGHSLG-----EYAALASLADVMSIES-LV 1783
Query: 204 HTIR-RIKLYSDSLAR--YGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVI 260
+ R ++ R G+S Y M + P A L V+ +
Sbjct: 1784 EVVFYRGMTMQVAVPRDELGRSNYG--MIAIN--PGRV----AASFSQEALQYVVERVGK 1835
Query: 261 ENGKVVGVRSGTEIA 275
G +V EI
Sbjct: 1836 RTGWLV------EIV 1844
Score = 39.6 bits (92), Expect = 0.002
Identities = 51/276 (18%), Positives = 94/276 (34%), Gaps = 89/276 (32%)
Query: 14 LKECILSG------MLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVTFG 67
L++ + + MLS+S + +++ +K S LP
Sbjct: 324 LEDSLENNEGVPSPMLSISN----------------LTQEQVQDYVNKTNSHLPAG---- 363
Query: 68 RGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLE--FKSVEGSYVFKGGKISKVPVDQKE 125
+ + L+ NG+ K L+ +G + L ++ + G S++P ++
Sbjct: 364 --KQVEISLV------NGA--KNLVVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSER- 412
Query: 126 ALASDLMGLFEKRRFRN-FLVYIQE-F-----SEADPKTWKDINPQSAT--TAQL----Y 172
K +F N FL + F A KD+ + + + Y
Sbjct: 413 -----------KLKFSNRFLP-VASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQIPVY 460
Query: 173 DKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLY--P--M 228
D T F G L + I++ + I R+ + ++ ++ + L P
Sbjct: 461 D-------T--FDGSDLRVLSGS--ISERIVDCIIRLPVKWETTTQFKATHILDFGPGGA 509
Query: 229 YGLGELPQSF-----ARLSAIYGGTYMLDK-PVDEI 258
GLG L R+ I GT LD P D+
Sbjct: 510 SGLGVLTHRNKDGTGVRV--IVAGT--LDINPDDDY 541
Score = 39.3 bits (91), Expect = 0.003
Identities = 34/255 (13%), Positives = 66/255 (25%), Gaps = 92/255 (36%)
Query: 132 MGLFEKRRFRNFLVYIQEFSEADPKTWK-------DI---NPQSAT----------TAQL 171
MG ++ ++ AD DI NP + T +
Sbjct: 1631 MG---MDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEKGKRIREN 1687
Query: 172 YDKFGLDPNTKDFTGHALALYRD-DEYINDL-----------------AIHTIRRIKLYS 213
Y + D ++++ +E+ A+ +
Sbjct: 1688 YSAMIFE-TIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLM------- 1739
Query: 214 DSLARY------GKSPYLYPMYG--LGE----------LP-QSFARLSAIYGGTYMLDKP 254
A + G P G LGE + +S + G T + P
Sbjct: 1740 -EKAAFEDLKSKGLIPADATFAGHSLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVP 1798
Query: 255 VDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRCICLMDHPIPNTKDA 314
DE+ N ++ + G A Q + L V+ + +
Sbjct: 1799 RDELGRSNYGMIAINPGRVAASFSQ------------EALQYVVERVG--------KRTG 1838
Query: 315 LSCQII---IPQKQV 326
+I+ + +Q
Sbjct: 1839 WLVEIVNYNVENQQY 1853
Score = 37.3 bits (86), Expect = 0.010
Identities = 58/386 (15%), Positives = 105/386 (27%), Gaps = 131/386 (33%)
Query: 5 YDA-IVLGTGLKECILSGMLSVSGKKVLHIDRNKY--YGGESASITPLEEL--------- 52
A I+ + S + G+ + +GG+ + EEL
Sbjct: 127 ITARIMAKRPFDKKSNSALFRAVGEGNAQL----VAIFGGQGNTDDYFEELRDLYQTYHV 182
Query: 53 -----FSKFGSTLPDEVT--------FGRGRD---W--NVDLIPK--FLMANG-S--LVK 89
TL + + F +G + W N P +L++ S L+
Sbjct: 183 LVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIG 242
Query: 90 L--LIH-------TGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEK-RR 139
+ L H G T ++G+ G ++ V + A F R+
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAI----AETDSWESFFVSVRK 298
Query: 140 FRNFLVYI----QE---FSEADPKTWKD-----------------------------INP 163
L +I E + P +D N
Sbjct: 299 AITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQDYVNKTNS 358
Query: 164 QSATTAQLYDKFGLDPNTKD-F--TGHALALYRDDEYINDLAIHTIRRIK---------- 210
Q+ L N +G +LY L + +R+ K
Sbjct: 359 HLPAGKQVE--ISL-VNGAKNLVVSGPPQSLYG-------LNLT-LRKAKAPSGLDQSRI 407
Query: 211 LYSDSLARYGK----------SPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPV-DEIV 259
+S+ ++ S L P L + + + + + + PV D
Sbjct: 408 PFSERKLKFSNRFLPVASPFHSHLLVPASDL--INKDLVKNNVSFNAKD-IQIPVYD--- 461
Query: 260 IENGKVVGVRSGTEIAR-CKQVYCDP 284
+G + V SG+ R + P
Sbjct: 462 TFDGSDLRVLSGSISERIVDCIIRLP 487
>3nrn_A Uncharacterized protein PF1083; alpha-beta protein, structural
genomics, PSI-2, protein STRU initiative; HET: AMP;
2.10A {Pyrococcus furiosus}
Length = 421
Score = 57.8 bits (140), Expect = 3e-09
Identities = 53/399 (13%), Positives = 108/399 (27%), Gaps = 98/399 (24%)
Query: 6 DAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
A+V+G GL G+ L+ +G +++ ++++ GG +
Sbjct: 2 RAVVVGAGL-----GGLLAGAFLARNGHEIIVLEKSAMIGGRFTN-------LPY----- 44
Query: 61 PDEVTFGRGRDWNVDLIPKFLM---ANGSLVKLLIHTGVTRYLEFKSVEGSY-VFKGGKI 116
++ +G L LL G +E + + GKI
Sbjct: 45 -KGFQL--------STGALHMIPHGEDGPLAHLLRILGA--KVEIVNSNPKGKILWEGKI 93
Query: 117 SKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFG 176
K + + EK + L I+ + + +K G
Sbjct: 94 FHYRESWK------FLSVKEKAKALKLLAEIRMNKLPKEEI--------PADEWIKEKIG 139
Query: 177 LDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQ 236
+ + + ++ + + K +L G G +
Sbjct: 140 ENEFLLSV---LESFAGWADSVSLSDLTALELAKEIRAALRWGG---PGLIRGGCKAVID 193
Query: 237 SFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCD------------- 283
R+ G + K V EI IE KV R E +
Sbjct: 194 ELERIIMENKGKILTRKEVVEINIEEKKVY-TRDNEEY-SFDVAISNVGVRETVKLIGRD 251
Query: 284 --PSYVQDRVKKLNQV--------IRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIY 333
+V + + + + I + P +N
Sbjct: 252 YFDRDYLKQVDSIEPSEGIKFNLAVPGEPRIGNTI----------VFTPGLMIN-----G 296
Query: 334 VSLVSYTHQVSA-KGWFIAMVSTTVETDNPELEIKPGLD 371
+ S + A +G+ + M ++ N + I+ G +
Sbjct: 297 FNEPSALDKSLAREGYTLIMAHMALKNGNVKKAIEKGWE 335
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 50.2 bits (119), Expect = 1e-06
Identities = 57/458 (12%), Positives = 125/458 (27%), Gaps = 133/458 (29%)
Query: 18 ILSGMLSVSGKKVLHID--RNKYYGGESASITPLEELFSKFGSTLPDEV---TFGRGRDW 72
++ G+L SGK + +D + K + ++
Sbjct: 154 LIDGVLG-SGKTWVALDVCLSY-----------------KVQCKMDFKIFWLNLKNCNS- 194
Query: 73 NVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPVDQKEALASDLM 132
P+ ++ L KLL ++ ++ + S + + ++ ++L
Sbjct: 195 -----PETVLEM--LQKLLYQ-----------IDPNWTSRSDHSSNIKLR-IHSIQAELR 235
Query: 133 GLFEKRRFRNFL-----VYIQEFSEADPKTWKDINPQS---ATT--AQLYDKFGLDPNTK 182
L + + + N L V + K W N TT Q+ D T
Sbjct: 236 RLLKSKPYENCLLVLLNVQ-------NAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288
Query: 183 DFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGK--SPYLYPMYGLGELPQSFAR 240
H DE + L + + L R +P + + A
Sbjct: 289 ISLDHHSMTLTPDEVKSLLL----KYLDCRPQDLPREVLTTNPRRLSIIAE-SIRDGLAT 343
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKKLNQVIRC 300
DK + I I V +P+ + +L +
Sbjct: 344 WD--NWKHVNCDK-LTTI---------------IESSLNVL-EPAEYRKMFDRL--SV-- 380
Query: 301 ICLMDH-PIP--------NTKDALSCQIIIPQKQVNRKSDI---YVSLVSYTHQVSAKGW 348
IP +++ ++++ S + +
Sbjct: 381 --FPPSAHIPTILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKESTISIPSIY---- 432
Query: 349 FIAMVSTTVETDN-PELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQ---IFISTSY 404
+ V+ +N L ++ Y ++ DL + +
Sbjct: 433 ----LELKVKLENEYALHRS----IVDHYNIP-----KTFDSDDLIPPYLDQYFYSHIGH 479
Query: 405 DATTHFETV-CTDVVNLFKRGTGEDFDFSKIKLEEEAS 441
H + + + + LF+ DF F + K+ +++
Sbjct: 480 ----HLKNIEHPERMTLFRM-VFLDFRFLEQKIRHDST 512
Score = 44.1 bits (103), Expect = 1e-04
Identities = 43/251 (17%), Positives = 69/251 (27%), Gaps = 85/251 (33%)
Query: 32 HIDRNKYYGGE------SASITPLE-----ELFSKFGSTLPDEV-----TFGRGRDWN-- 73
D K+ + +S+ LE ++F + S P W
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL-SVFPPSAHIPTILLSL--IWFDV 399
Query: 74 ----VDLIPKFLMANGSLVK-------LLIHTGVTRYLEFKS------------VEGSY- 109
V ++ L SLV+ + I + YLE K V+ Y
Sbjct: 400 IKSDVMVVVNKL-HKYSLVEKQPKESTISIPS---IYLELKVKLENEYALHRSIVD-HYN 454
Query: 110 ---VFKGGKISKVPVDQ----------KEALASDLMGLFEKRRFRNFLVYIQEFSEADPK 156
F + +DQ K + M LF F +F F E
Sbjct: 455 IPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMV-FLDF-----RFLEQ--- 505
Query: 157 TWKDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSL 216
K + +A A + + L Y+ YI D R + D L
Sbjct: 506 --KIRHDSTAWNA----SGSILNTLQQ-----LKFYKP--YICDNDPKYERLVNAILDFL 552
Query: 217 ARYGKSPYLYP 227
+ ++
Sbjct: 553 PKIEENLICSK 563
Score = 34.4 bits (78), Expect = 0.075
Identities = 37/240 (15%), Positives = 67/240 (27%), Gaps = 76/240 (31%)
Query: 252 DKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRVKK----LNQVIRCICLMDHP 307
+ +D I++ V G KQ +V++ ++ L I+ P
Sbjct: 48 KEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR--QP 105
Query: 308 IPNTKDALSCQ-------IIIPQKQVNR--------------KSDIYVSLVSYTHQV--S 344
T+ + + + + V+R + V + V S
Sbjct: 106 SMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLI----DGVLGS 161
Query: 345 AKGWFIAMV--STTVET--------------DNPELEIKPGLDLLGSYKKKFVTVSDYYE 388
K W V S V+ ++PE ++ LL + + SD+
Sbjct: 162 GKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS 221
Query: 389 PTDLGTES------QIFISTSY-------DATTHFETVCTDVVNLFKRGTGEDFDFS-KI 434
L S ++ S Y +V N F+ S KI
Sbjct: 222 NIKLRIHSIQAELRRLLKSKPYENCLLVLL----------NVQN---AKAWNAFNLSCKI 268
Score = 29.8 bits (66), Expect = 2.1
Identities = 17/98 (17%), Positives = 34/98 (34%), Gaps = 20/98 (20%)
Query: 357 VETDNPELEIKPGLDLLGSYKKKFVTVSDYYEPTDLGTESQIFISTSYDATTH------- 409
++ + E + + D+L ++ FV D + D+ I D
Sbjct: 7 MDFETGEHQYQYK-DILSVFEDAFVDNFDCKDVQDM--PKSILSKEEIDHIIMSKDAVSG 63
Query: 410 ----FETVCTDVVNLFKRGTGE----DFDF--SKIKLE 437
F T+ + + ++ E ++ F S IK E
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTE 101
>3utf_A UDP-galactopyranose mutase; nucleotide binding, flavin adenine
dinucleotide BIND isomerase; HET: FDA; 2.25A
{Aspergillus fumigatus} PDB: 3ute_A* 3utg_A* 3uth_A*
3ukh_A* 3ukf_A* 3uka_A* 3ukl_A* 3ukk_A* 3ukq_A* 3ukp_A*
Length = 513
Score = 38.7 bits (89), Expect = 0.003
Identities = 42/301 (13%), Positives = 91/301 (30%), Gaps = 47/301 (15%)
Query: 2 DEEYDAIVLGTGLKECILSGM------LSVSGKKVLHIDRNKYYGGESASITPLEELFSK 55
D D +V+G G +G+ + G + +D N+ GG +++
Sbjct: 8 DISVDVLVIGAGP-----TGLGAAKRLNQIDGPSWMIVDSNETPGGLAST---------- 52
Query: 56 FGSTLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVE-GSYVFKGG 114
+VT + D+ + ++ + + + ++ + + SYV G
Sbjct: 53 -------DVTPE---GFLYDVGGHVIFSHYKYFDDCLDEALPKEDDWYTHQRISYVRCQG 102
Query: 115 KISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQ----SATTAQ 170
+ P +++ L ++ + + I EA K
Sbjct: 103 QWVPYP------FQNNISMLPKEEQVKCIDGMIDAALEARVANTKPKTFDEWIVRMMGTG 156
Query: 171 LYDKFGLDPNTKDFTGHALALYRD--DEYINDLAI-HTIRRIKLYSDSLARYGKSPYLYP 227
+ D F N K + + E + + + L + + + +P
Sbjct: 157 IADLFMRPYNFKVWAVPTTKMQCAWLGERVAAPNLKAVTTNVILGKTAGNWGPNATFRFP 216
Query: 228 M-YGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSY 286
G G + + A + V ++ N V ++ GT I K V
Sbjct: 217 ARGGTGGIWIAVANTLPKEKTRFGEKGKVTKVNANNKTVT-LQDGTTIGYKKLVSTMAVD 275
Query: 287 V 287
Sbjct: 276 F 276
>3hdq_A UDP-galactopyranose mutase; substrate and inhibitor, isomerase;
HET: GDU FAD; 2.36A {Deinococcus radiodurans} PDB:
3hdy_A* 3he3_A* 3mj4_A*
Length = 397
Score = 35.1 bits (80), Expect = 0.037
Identities = 13/41 (31%), Positives = 25/41 (60%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41
+ +D +++G G +L+ L+ SG++VL +DR + GG
Sbjct: 26 ESKGFDYLIVGAGFAGSVLAERLASSGQRVLIVDRRPHIGG 66
>2bi7_A UDP-galactopyranose mutase; FAD, flavoprotein, isomerase,
lipopolysaccharide biosynthesi; HET: FAD; 2.0A
{Klebsiella pneumoniae} SCOP: c.4.1.3 d.16.1.7 PDB:
2bi8_A* 1wam_A* 3inr_A* 3gf4_A* 3int_A* 3kyb_A*
Length = 384
Score = 33.5 bits (76), Expect = 0.12
Identities = 9/39 (23%), Positives = 19/39 (48%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41
+ +++G G ++ L+ G +V ID+ + GG
Sbjct: 2 KSKKILIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGG 40
>1v0j_A UDP-galactopyranose mutase; flavoprotein, isomerase; HET: FAD
BCN; 2.25A {Mycobacterium tuberculosis}
Length = 399
Score = 33.2 bits (75), Expect = 0.14
Identities = 11/42 (26%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSV-SGKKVLHIDRNKYYGG 41
M +D V+G+G ++ ++ K+VL ++R + GG
Sbjct: 4 MTARFDLFVVGSGFFGLTIAERVATQLDKRVLVLERRPHIGG 45
>3pl8_A Pyranose 2-oxidase; substrate complex, H167A mutant,
homotetramer, GMC oxidoredu PHBH fold, rossmann domain,
oxidoreductase; HET: FAD MES G3F; 1.35A {Trametes
ochracea} PDB: 2igo_A* 3lsm_A* 2ign_A* 3k4c_A* 1tt0_A*
2igk_A* 3k4b_A* 3lsk_A* 3bg6_A* 3lsh_A* 3lsi_A* 2igm_A*
3k4j_A* 3k4m_A* 3bg7_A* 3k4k_A* 3k4l_A* 3bly_A* 1tzl_A*
3fdy_A* ...
Length = 623
Score = 33.7 bits (76), Expect = 0.15
Identities = 12/35 (34%), Positives = 19/35 (54%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDR 35
MD +YD +++G+G C + L +G KV D
Sbjct: 43 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDI 77
>1n4w_A CHOD, cholesterol oxidase; flavoenzyme, steroid metabolism,
oxidoreductase, atomic RESO; HET: FAD; 0.92A
{Streptomyces SP} SCOP: c.3.1.2 d.16.1.1 PDB: 1b4v_A*
1n1p_A* 1n4u_A* 1n4v_A* 1mxt_A* 2gew_A* 1b8s_A* 3gyi_A*
1cc2_A* 3gyj_A* 1ijh_A* 1cbo_A* 3b3r_A* 3b6d_A* 3cnj_A*
Length = 504
Score = 33.1 bits (75), Expect = 0.17
Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 7/104 (6%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPD 62
A+V+GTG + + L +G + L ++ G P +F +
Sbjct: 4 GYVPAVVIGTGYGAAVSALRLGEAGVQTLMLEM----GQLWNQPGPDGNIFCGMLNPDKR 59
Query: 63 EVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVE 106
F + + FL + + + GV + + +
Sbjct: 60 SSWFKNRTEAPL---GSFLWLDVVNRNIDPYAGVLDRVNYDQMS 100
>3ces_A MNMG, tRNA uridine 5-carboxymethylaminomethyl modificat GIDA, GIDA;
tRNA modification, FAD binding domain, structural
genomics; 2.41A {Escherichia coli} PDB: 3cp2_A 3g05_A
Length = 651
Score = 33.2 bits (77), Expect = 0.18
Identities = 10/28 (35%), Positives = 17/28 (60%), Gaps = 3/28 (10%)
Query: 255 VDEIVIENGKVVGVR--SGTEIARCKQV 280
V+++++EN +VVG G + R K V
Sbjct: 147 VEDLIVENDRVVGAVTQMGLKF-RAKAV 173
>4at0_A 3-ketosteroid-delta4-5alpha-dehydrogenase; oxidoreductase,
dehydogenase, steroid catabolism; HET: FAD; 1.60A
{Rhodococcus jostii} PDB: 4at2_A*
Length = 510
Score = 33.1 bits (76), Expect = 0.18
Identities = 13/45 (28%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSV--SGKKVLHIDRNKYYGGESA 44
D E D +V G G+ ++ + +G VL ++R +GG +A
Sbjct: 39 DYEADVVVAGYGI--AGVAASIEAARAGADVLVLERTSGWGGATA 81
>1i8t_A UDP-galactopyranose mutase; rossman fold, FAD, contractase,
isomerase; HET: FAD; 2.40A {Escherichia coli} SCOP:
c.4.1.3 d.16.1.7
Length = 367
Score = 32.7 bits (74), Expect = 0.20
Identities = 16/53 (30%), Positives = 27/53 (50%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFG 57
YD I++G+GL + + L KKVL I++ + GG + + K+G
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYG 54
>2zxi_A TRNA uridine 5-carboxymethylaminomethyl modificat MNMG;
modification, 5-carboxymethylaminomethyl uridine, WOBB
uridine, FAD; HET: FAD; 2.30A {Aquifex aeolicus} PDB:
2zxh_A* 2e57_A*
Length = 637
Score = 32.8 bits (76), Expect = 0.21
Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 3/28 (10%)
Query: 255 VDEIVIENGKVVGVR--SGTEIARCKQV 280
V +I+++N +VVGVR G E + K V
Sbjct: 146 VVDIIVKNNQVVGVRTNLGVEY-KTKAV 172
>3cp8_A TRNA uridine 5-carboxymethylaminomethyl modification enzyme GIDA;
rossmann fold, FAD-binding domain, dinucleotide-binding
motif; HET: FAD; 3.20A {Chlorobium tepidum}
Length = 641
Score = 32.8 bits (76), Expect = 0.21
Identities = 8/28 (28%), Positives = 11/28 (39%), Gaps = 3/28 (10%)
Query: 255 VDEIVIENGKVVGVR--SGTEIARCKQV 280
V + +GK V SG I + K
Sbjct: 140 VIGVSANSGKFSSVTVRSGRAI-QAKAA 166
>2cul_A Glucose-inhibited division protein A-related PROT probable
oxidoreductase; rossmann fold, protein-FAD complex; HET:
FAD; 1.65A {Thermus thermophilus} SCOP: c.3.1.7
Length = 232
Score = 32.2 bits (74), Expect = 0.22
Identities = 9/28 (32%), Positives = 15/28 (53%), Gaps = 3/28 (10%)
Query: 255 VDEIVIENGKVVGVR--SGTEIARCKQV 280
+++E +VVGVR G R ++V
Sbjct: 91 ATGLLLEGNRVVGVRTWEGPPA-RGEKV 117
>1y0p_A Fumarate reductase flavoprotein subunit; flavocytochrome,
mesaconate, oxidoreductase; HET: HEM FAD; 1.50A
{Shewanella frigidimarina} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1qjd_A* 2b7s_A* 1jry_A* 2b7r_A* 1ksu_A*
1jrz_A* 1jrx_A* 1m64_A* 1p2h_A* 1p2e_A* 1kss_A* 1e39_A*
1q9i_A* 1lj1_A*
Length = 571
Score = 31.6 bits (72), Expect = 0.51
Identities = 12/45 (26%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVS--GKKVLHIDRNKYYGGESA 44
+ D +V+G+G S +S + G KV+ I++ GG +
Sbjct: 124 HDTVDVVVVGSGG--AGFSAAISATDSGAKVILIEKEPVIGGNAK 166
>1qo8_A Flavocytochrome C3 fumarate reductase; oxidoreductase; HET: HEM
FAD; 2.15A {Shewanella frigidimarina} SCOP: a.138.1.3
c.3.1.4 d.168.1.1
Length = 566
Score = 30.8 bits (70), Expect = 0.88
Identities = 11/45 (24%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSV--SGKKVLHIDRNKYYGGESA 44
E +V+G G + L+ +G V+ +D+ + GG S
Sbjct: 119 SETTQVLVVGAGS--AGFNASLAAKKAGANVILVDKAPFSGGNSM 161
Score = 27.7 bits (62), Expect = 9.7
Identities = 10/41 (24%), Positives = 18/41 (43%), Gaps = 6/41 (14%)
Query: 246 GGTYMLDKPVDEIVI-ENGKVVGVR-----SGTEIARCKQV 280
G L+ V ++V+ ++ VVG +G + K V
Sbjct: 264 GIDTRLNSRVVKLVVNDDHSVVGAVVHGKHTGYYMIGAKSV 304
>2ivd_A PPO, PPOX, protoporphyrinogen oxidase; porphyrin biosynthesis,
chlorophyll biosynthesis, oxidoreductase, HAEM
biosynthesis, heme biosynthesis; HET: ACJ FAD TWN; 2.3A
{Myxococcus xanthus} SCOP: c.3.1.2 d.16.1.5 PDB: 2ive_A*
Length = 478
Score = 30.7 bits (69), Expect = 1.1
Identities = 43/312 (13%), Positives = 82/312 (26%), Gaps = 72/312 (23%)
Query: 3 EEYDAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESASITPLEELFSKFG 57
+ V+G G+ SG+ L G + ++ + GG +
Sbjct: 15 TGMNVAVVGGGI-----SGLAVAHHLRSRGTDAVLLESSARLGGAVGTH----------- 58
Query: 58 STLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHT-GVTRYLEFKSVEG--SYVFKGG 114
+ V+ P + + L + + YV+ G
Sbjct: 59 ----------ALAGYLVEQGPNSFLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRG 108
Query: 115 KISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDK 174
++ VP LASD++ L + R + + + + A +
Sbjct: 109 RLRSVPASPPAFLASDILPLGARLRVA-----------GELFSRRAPEGVDESLAAFGRR 157
Query: 175 -FG-------LDP--------NTKDFTGHAL--ALYRDDEYINDLAIHTIRRIKL----- 211
G LD + + + A L + + L + IR K
Sbjct: 158 HLGHRATQVLLDAVQTGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAA 217
Query: 212 YSDSLARYGKSPYLYPMYGLGELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSG 271
A GL L + A G + V+ + E+G +
Sbjct: 218 LPAGTAPKLSGALSTFDGGLQVLIDALAASL---GDAAHVGARVEGLAREDGGWR-LIIE 273
Query: 272 TEIARCKQVYCD 283
R +
Sbjct: 274 EHGRRAELSVAQ 285
>3cgv_A Geranylgeranyl reductase related protein; NP_393992.1,
geranylgeranyl bacteriochlorophyll reductase- like FIXC
homolog; HET: MSE FAD UNL; 1.60A {Thermoplasma
acidophilum dsm 1728} PDB: 3oz2_A*
Length = 397
Score = 30.4 bits (69), Expect = 1.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40
E YD +V+G G + + G K L I++ G
Sbjct: 3 ETYDVLVVGGGPGGSTAARYAAKYGLKTLMIEKRPEIG 40
Score = 28.8 bits (65), Expect = 3.6
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 204 HTIRRIKLYSDSLARYGKSPYLYPMYGLG------ELPQSFARLSAIYGGTYMLDKPVDE 257
+ ++ ++Y S R +G + + A L+A G + P
Sbjct: 68 NEVKGARIYGPSEKRPIILQSEKAGNEVGYVLERDKFDKHLAALAAKAGADVWVKSPALG 127
Query: 258 IVIENGKVVGVRSGTE 273
++ ENGKV G +
Sbjct: 128 VIKENGKVAGAKIRHN 143
>3atr_A Conserved archaeal protein; saturating double bonds, archaeal
membrane precursor, like 2 geranylgeranylglyceryl
phosphate; HET: FDA; 1.80A {Sulfolobus acidocaldarius}
PDB: 3atq_A*
Length = 453
Score = 30.2 bits (68), Expect = 1.5
Identities = 13/90 (14%), Positives = 24/90 (26%), Gaps = 8/90 (8%)
Query: 184 FTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGL----GELPQSFA 239
+ + + I IKLYS ++ + G Q
Sbjct: 52 VSKAHFDKLGMPYPKGEELENKINGIKLYSPD----MQTVWTVNGEGFELNAPLYNQRVL 107
Query: 240 RLSAIYGGTYMLDKPVDEIVIENGKVVGVR 269
+ + G + + E+G V G
Sbjct: 108 KEAQDRGVEIWDLTTAMKPIFEDGYVKGAV 137
>1y56_B Sarcosine oxidase; dehydrogenase, protein-protein complex,
oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus
horikoshii}
Length = 382
Score = 29.8 bits (68), Expect = 2.0
Identities = 12/45 (26%), Positives = 21/45 (46%)
Query: 236 QSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQV 280
+FA + YG + V +IEN ++ GV++ I + V
Sbjct: 153 TAFAVKAKEYGAKLLEYTEVKGFLIENNEIKGVKTNKGIIKTGIV 197
>1d4d_A Flavocytochrome C fumarate reductase; oxidoreductase; HET: HEM FAD;
2.50A {Shewanella oneidensis} SCOP: a.138.1.3 c.3.1.4
d.168.1.1 PDB: 1d4e_A* 1d4c_A*
Length = 572
Score = 29.7 bits (67), Expect = 2.3
Identities = 10/49 (20%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
Query: 1 MDEEYDAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESA 44
+ E D +++G+G +G+ +G KV+ +++ GG +
Sbjct: 123 VKETTDVVIIGSG-----GAGLAAAVSARDAGAKVILLEKEPIPGGNTK 166
>2uzz_A N-methyl-L-tryptophan oxidase; N-methyltryptophan oxidase (MTOX),
oxidative demethylation of N-methyl-L-tryptophan, FAD,
flavoenzyme; HET: FAD; 3.2A {Escherichia coli}
Length = 372
Score = 29.2 bits (66), Expect = 2.8
Identities = 8/45 (17%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
Query: 236 QSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQV 280
+++ +L+ G + + PV I ++ V + E + K+
Sbjct: 153 KTWIQLAKEAGCAQLFNCPVTAIRHDDDGVTIETADGEY-QAKKA 196
>2gag_B Heterotetrameric sarcosine oxidase beta-subunit; flavoenzyme,
electron transfer, folate-ME enzyme, oxidoreductase;
HET: NAD FAD FMN; 1.85A {Stenotrophomonas maltophilia}
PDB: 2gah_B* 1x31_B* 1vrq_B* 3ad7_B* 3ad8_B* 3ad9_B*
3ada_B*
Length = 405
Score = 28.7 bits (65), Expect = 3.7
Identities = 10/45 (22%), Positives = 19/45 (42%)
Query: 236 QSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQV 280
+FAR + G + + V + + KV GV++ +V
Sbjct: 178 WAFARKANEMGVDIIQNCEVTGFIKDGEKVTGVKTTRGTIHAGKV 222
>1pj5_A N,N-dimethylglycine oxidase; channelling, FAD binding, folate
binding, amine oxidase, oxidoreductase; HET: FAD; 1.61A
{Arthrobacter globiformis} SCOP: b.44.2.1 c.3.1.2
d.16.1.5 d.250.1.1 PDB: 1pj6_A* 1pj7_A* 3gsi_A*
Length = 830
Score = 28.9 bits (65), Expect = 4.1
Identities = 11/45 (24%), Positives = 17/45 (37%)
Query: 236 QSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQV 280
Q + + G TY V I G+V GV++ + V
Sbjct: 155 QLLIKRTESAGVTYRGSTTVTGIEQSGGRVTGVQTADGVIPADIV 199
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 28.0 bits (61), Expect = 4.2
Identities = 7/19 (36%), Positives = 10/19 (52%), Gaps = 7/19 (36%)
Query: 208 RIKLYS-DSLARYGKSPYL 225
+KLY+ DS +P L
Sbjct: 28 SLKLYADDS------APAL 40
>2crz_A Fibronectin type-III domain containing protein 3A; structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} SCOP:
b.1.2.1
Length = 110
Score = 27.3 bits (61), Expect = 4.4
Identities = 6/36 (16%), Positives = 11/36 (30%), Gaps = 3/36 (8%)
Query: 146 YIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNT 181
Y E S + +++ S + L P
Sbjct: 44 YSVEMSPIEKDEPREVYQGSEVECTV---SSLLPGK 76
>1mo9_A ORF3; nucleotide binding motifs, nucleotide binding domain,
oxidor; HET: FAD KPC; 1.65A {Xanthobacter
autotrophicus} SCOP: c.3.1.5 c.3.1.5 d.87.1.1 PDB:
1mok_A* 2c3c_A* 2c3d_A* 3q6j_A*
Length = 523
Score = 28.8 bits (65), Expect = 4.4
Identities = 14/47 (29%), Positives = 19/47 (40%), Gaps = 12/47 (25%)
Query: 1 MDEEYDAIVLGTGLKECILSG------MLSVSGKKVLHIDRNKYYGG 41
EYDAI +G G + L G + L +DR + GG
Sbjct: 40 DPREYDAIFIGGG------AAGRFGSAYLRAMGGRQLIVDRWPFLGG 80
>1kdg_A CDH, cellobiose dehydrogenase; GMC oxidoreductase, PHBH fold,
alpha/beta structure, rossman 6-hydroxylated FAD,
oxidoreductase; HET: NAG MAN 6FA EMT; 1.50A
{Phanerochaete chrysosporium} SCOP: c.3.1.2 d.16.1.1
PDB: 1naa_A*
Length = 546
Score = 28.3 bits (64), Expect = 5.9
Identities = 13/31 (41%), Positives = 17/31 (54%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVL 31
YD I++G G I + LS +GKKVL
Sbjct: 4 SATPYDYIIVGAGPGGIIAADRLSEAGKKVL 34
>3nlc_A Uncharacterized protein VP0956; FAD-binding protein, NESG,
structural genomics, PSI-2, prote structure initiative;
HET: FAD; 2.15A {Vibrio parahaemolyticus}
Length = 549
Score = 28.4 bits (63), Expect = 6.1
Identities = 11/40 (27%), Positives = 19/40 (47%), Gaps = 1/40 (2%)
Query: 246 GGTYMLDKPVDEIVIENGKVVGVR-SGTEIARCKQVYCDP 284
GG VD++ +E+G++ GV S E + + V
Sbjct: 234 GGEIRFSTRVDDLHMEDGQITGVTLSNGEEIKSRHVVLAV 273
>2r9z_A Glutathione amide reductase; NAD, FAD, substrate specificity,
oxidoreductase; HET: FAD; 2.10A {Marichromatium
gracile} PDB: 2rab_A*
Length = 463
Score = 28.2 bits (64), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 13/47 (27%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVS------GKKVLHIDRNKYYGG 41
M + +D I +G G SG L+V+ GK+V I+ K GG
Sbjct: 1 MTQHFDLIAIGGG------SGGLAVAEKAAAFGKRVALIES-KALGG 40
>3dje_A Fructosyl amine: oxygen oxidoreductase; fructosyl-amino acid,
amadoriase, deglycation, fructosamine oxidase; HET: MSE
FAD FSA EPE; 1.60A {Aspergillus fumigatus} PDB: 3djd_A*
Length = 438
Score = 27.9 bits (62), Expect = 6.9
Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)
Query: 236 QSFARLSAIYGGTYMLDKP---VDEIVIENGKVVGVR--SGTEIARCKQV 280
+ AR + G ++ P V ++ EN V G G R ++
Sbjct: 165 VAAAREAQRMGVKFVTGTPQGRVVTLIFENNDVKGAVTADGKIW-RAERT 213
>2gqf_A Hypothetical protein HI0933; structural genomics, FAD-utilizing
protein, flavoprotein, PS protein structure initiative;
HET: FAD; 2.70A {Haemophilus influenzae} SCOP: c.3.1.8
e.74.1.1
Length = 401
Score = 27.8 bits (63), Expect = 7.6
Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 10/42 (23%)
Query: 1 MDEEYDAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNK 37
M + + I++G G +G+ L+ GK V D K
Sbjct: 1 MSQYSENIIIGAG-----AAGLFCAAQLAKLGKSVTVFDNGK 37
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain
cytoplasmic; motor protein, AAA+ protein, ASCE protein,
P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma
japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Length = 2695
Score = 27.9 bits (62), Expect = 9.6
Identities = 5/31 (16%), Positives = 9/31 (29%), Gaps = 2/31 (6%)
Query: 155 PKTWKDINPQSATTAQLYDKFGLDPNTKDFT 185
I+ + T LY T ++
Sbjct: 954 ANVVYVIDTKVLTKESLYGSM--LKATLEWR 982
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.137 0.401
Gapped
Lambda K H
0.267 0.0722 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,985,540
Number of extensions: 431998
Number of successful extensions: 1262
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1239
Number of HSP's successfully gapped: 64
Length of query: 441
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 345
Effective length of database: 4,021,377
Effective search space: 1387375065
Effective search space used: 1387375065
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (26.5 bits)