RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy2620
(441 letters)
>d1vg0a1 c.3.1.3 (A:3-444,A:558-606) Rab escort protein 1 {Rat
(Rattus norvegicus) [TaxId: 10116]}
Length = 491
Score = 330 bits (848), Expect = e-110
Identities = 74/280 (26%), Positives = 122/280 (43%), Gaps = 20/280 (7%)
Query: 62 DEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVPV 121
GR +N+DL+ K L + G L+ LLI + V+RY EFK++ F+ G + +VP
Sbjct: 212 YSQIIKEGRRFNIDLVSKLLYSRGLLIDLLIKSNVSRYAEFKNITRILAFREGTVEQVPC 271
Query: 122 DQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPNT 181
+ + S + + EKR FL + E+ E P ++ T ++ L PN
Sbjct: 272 SRADVFNSKQLTMVEKRMLMKFLTFCVEYEE-HPDEYRAYEGT--TFSEYLKTQKLTPNL 328
Query: 182 KDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFARL 241
+ F H++A+ + + ++ K + L RYG +P+L+P+YG GELPQ F R+
Sbjct: 329 QYFVLHSIAMTSETTS---CTVDGLKATKKFLQCLGRYGNTPFLFPLYGQGELPQCFCRM 385
Query: 242 SAIYGGTYMLDKPVDEIVI--ENGKVVGVR-SGTEIARCKQVYCDPSYVQDRVKKLNQVI 298
A++GG Y L V +V+ E+ K V + K + SY+ + +
Sbjct: 386 CAVFGGIYCLRHSVQCLVVDKESRKCKAVIDQFGQRIISKHFIIEDSYLSENTC---SRV 442
Query: 299 RCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVS 338
C D P S + +D V
Sbjct: 443 SRDCYNDLP--------SNVYVCSGPDSGLGNDNAVKQAE 474
Score = 88.2 bits (218), Expect = 2e-19
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPD 62
++D IV+GTGL E I++ S SG++VLH+D YYGG AS + L S +
Sbjct: 5 SDFDVIVIGTGLPESIIAAACSRSGQRVLHVDSRSYYGGNWASFS-FSGLLSWLKEYQEN 63
Query: 63 EVTFGRGRDWNVDLI 77
W ++
Sbjct: 64 NDVVTENSMWQEQIL 78
>d1d5ta2 d.16.1.6 (A:292-388) Guanine nucleotide dissociation
inhibitor, GDI {Cow (Bos taurus) [TaxId: 9913]}
Length = 97
Score = 176 bits (449), Expect = 2e-55
Identities = 60/97 (61%), Positives = 74/97 (76%)
Query: 292 KKLNQVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIA 351
+K QVIR IC++ HPI NT DA SCQIIIPQ QVNRKSDIYV ++SY H V+A+G +IA
Sbjct: 1 RKAGQVIRIICILSHPIKNTNDANSCQIIIPQNQVNRKSDIYVCMISYAHNVAAQGKYIA 60
Query: 352 MVSTTVETDNPELEIKPGLDLLGSYKKKFVTVSDYYE 388
+ STTVET +PE E++P L LL +KFV +SD YE
Sbjct: 61 IASTTVETTDPEKEVEPALGLLEPIDQKFVAISDLYE 97
>d2bcgg3 d.16.1.6 (G:302-399) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 98
Score = 176 bits (448), Expect = 3e-55
Identities = 47/93 (50%), Positives = 72/93 (77%)
Query: 296 QVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVST 355
+VIR IC+++HP+PNT +A S QIIIPQ Q+ RKSDIYV++VS H V +KG ++A++ST
Sbjct: 6 RVIRAICILNHPVPNTSNADSLQIIIPQSQLGRKSDIYVAIVSDAHNVCSKGHYLAIIST 65
Query: 356 TVETDNPELEIKPGLDLLGSYKKKFVTVSDYYE 388
+ETD P +E++P LLG ++KF+ +++ +E
Sbjct: 66 IIETDKPHIELEPAFKLLGPIEEKFMGIAELFE 98
>d2bcgg1 c.3.1.3 (G:5-301) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 297
Score = 181 bits (459), Expect = 1e-54
Identities = 166/296 (56%), Positives = 212/296 (71%), Gaps = 7/296 (2%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFG--- 57
+D +YD IVLGTG+ ECILSG+LSV GKKVLHID+ +YGGE+AS+T L +L+ KF
Sbjct: 2 IDTDYDVIVLGTGITECILSGLLSVDGKKVLHIDKQDHYGGEAASVT-LSQLYEKFKQNP 60
Query: 58 -STLPDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKI 116
S E FG+ RDWNVDLIPKFLMANG L +LIHT VTRY++FK V GSYVFK GKI
Sbjct: 61 ISKEERESKFGKDRDWNVDLIPKFLMANGELTNILIHTDVTRYVDFKQVSGSYVFKQGKI 120
Query: 117 SKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFG 176
KVP ++ EA++S LMG+FEKRR + FL +I + E D T + ++ T ++Y KFG
Sbjct: 121 YKVPANEIEAISSPLMGIFEKRRMKKFLEWISSYKEDDLSTHQGLDLDKNTMDEVYYKFG 180
Query: 177 LDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQ 236
L +TK+F GHA+AL+ +D+Y+ A + RI LY S+ARYGKSPYLYPMYGLGELPQ
Sbjct: 181 LGNSTKEFIGHAMALWTNDDYLQQPARPSFERILLYCQSVARYGKSPYLYPMYGLGELPQ 240
Query: 237 SFARLSAIYGGTYMLDKPVDEIVI--ENGKVVGVRSGTEIARCKQVYCDPSYVQDR 290
FARLSAIYGGTYMLD P+DE++ + GK GV++ + V DP+Y ++
Sbjct: 241 GFARLSAIYGGTYMLDTPIDEVLYKKDTGKFEGVKTKLGTFKAPLVIADPTYFPEK 296
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 161 bits (408), Expect = 1e-46
Identities = 205/291 (70%), Positives = 244/291 (83%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
MDEEYD IVLGTGL ECILSG++SV+GKKVLH+DRN YYGGES+SITPLEEL+ +F
Sbjct: 3 MDEEYDVIVLGTGLTECILSGIMSVNGKKVLHMDRNPYYGGESSSITPLEELYKRFQLLE 62
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGSYVFKGGKISKVP 120
T GRGRDWNVDLIPKFLMANG LVK+L++T VTRYL+FK VEGS+V+KGGKI KVP
Sbjct: 63 GPPETMGRGRDWNVDLIPKFLMANGQLVKMLLYTEVTRYLDFKVVEGSFVYKGGKIYKVP 122
Query: 121 VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDKFGLDPN 180
+ EALAS+LMG+FEKRRFR FLV++ F E DPKT++ ++PQ+ + +Y KF L +
Sbjct: 123 STETEALASNLMGMFEKRRFRKFLVFVANFDENDPKTFEGVDPQNTSMRDVYRKFDLGQD 182
Query: 181 TKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGELPQSFAR 240
DFTGHALALYR D+Y++ + TI RIKLYS+SLARYGKSPYLYP+YGLGELPQ FAR
Sbjct: 183 VIDFTGHALALYRTDDYLDQPCLETINRIKLYSESLARYGKSPYLYPLYGLGELPQGFAR 242
Query: 241 LSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCDPSYVQDRV 291
LSAIYGGTYML+KPVD+I++ENGKVVGV+S E+ARCKQ+ CDPSYV DRV
Sbjct: 243 LSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCKQLICDPSYVPDRV 293
Score = 64.9 bits (156), Expect = 3e-12
Identities = 28/62 (45%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 374 GSYKKKFVTVSDYY----EPTDLGTESQIFISTSYDATTHFETVCTDVVNLFKRGTGEDF 429
+ K + Y P D G+ESQ+F S SYDATTHFET C D+ +++KR G F
Sbjct: 275 EVARCKQLICDPSYVPDRVPIDDGSESQVFCSCSYDATTHFETTCNDIKDIYKRMAGSAF 334
Query: 430 DF 431
DF
Sbjct: 335 DF 336
>d1vg0a2 d.16.1.6 (A:445-557) Rab escort protein 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 113
Score = 110 bits (276), Expect = 6e-30
Identities = 12/98 (12%), Positives = 32/98 (32%), Gaps = 2/98 (2%)
Query: 296 QVIRCICLMDHPIPNTKDALSCQIIIPQKQVNRKSDIYVSLVSYTHQVSAKGWFIAMVST 355
Q+ R + + D + T I+ + + V + + KG ++ ++
Sbjct: 4 QISRAVLITDGSVLRTDADQQVSILTVPAEEPGSFAVRVIELCSSTMTCMKGTYLVHLTC 63
Query: 356 TVETDNPELEIKPGLD-LLGSYKKKFVTVSDYYEPTDL 392
+ +++ + L Y + +P L
Sbjct: 64 M-SSKTAREDLERVVQKLFTPYTEIEAENEQVEKPRLL 100
>d2bcgg2 c.3.1.3 (G:400-446) Guanine nucleotide dissociation
inhibitor, GDI {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 47
Score = 77.1 bits (190), Expect = 1e-18
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 389 PTDLGTESQIFISTSYDATTHFETVCTDVVNLFKRGTGEDFDFSK 433
P + G++ I++S SYDA++HFE++ DV +++ R TG +
Sbjct: 1 PREDGSKDNIYLSRSYDASSHFESMTDDVKDIYFRVTGHPLVLKQ 45
>d2f5va1 c.3.1.2 (A:43-354,A:553-619) Pyranose 2-oxidase
{White-rot fungus (Peniophora sp. SG) [TaxId: 204723]}
Length = 379
Score = 42.7 bits (99), Expect = 6e-05
Identities = 13/48 (27%), Positives = 21/48 (43%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITP 48
MD +YD +++G+G C + L +G KV D + G
Sbjct: 1 MDIKYDVVIVGSGPIGCTYARELVGAGYKVAMFDIGEIDSGLKIGAHK 48
>d2iida1 c.3.1.2 (A:4-319,A:433-486) L-aminoacid oxidase {Malayan
pit viper (Calloselasma rhodostoma) [TaxId: 8717]}
Length = 370
Score = 39.7 bits (91), Expect = 5e-04
Identities = 42/289 (14%), Positives = 88/289 (30%), Gaps = 50/289 (17%)
Query: 8 IVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPD 62
+++G G+ +G+ L+ +G +V ++ ++ GG +
Sbjct: 34 VIVGAGM-----AGLSAAYVLAGAGHQVTVLEASERPGGRVRTYR--------------- 73
Query: 63 EVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFK-SVEGSYVFKGGKISKVP- 120
W +L P L +V+ I R EF + ++ F KV
Sbjct: 74 ----NEEAGWYANLGPMRLPEKHRIVREYIRKFDLRLNEFSQENDNAWYFIKNIRKKVGE 129
Query: 121 ------VDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATTAQLYDK 174
+ + S+ + + ++E + + +T L +
Sbjct: 130 VKKDPGLLKYPVKPSEAGKSAGQLYEESLGKVVEELKRTNCSYILNKYDTYSTKEYLIKE 189
Query: 175 FGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGLGEL 234
L P D G +N+ + + + I+ + + + G+ +L
Sbjct: 190 GDLSPGAVDMIGD---------LLNEDSGYYVSFIESLKHDDIFAYEKRFDEIVDGMDKL 240
Query: 235 PQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGVRSGTEIARCKQVYCD 283
P + R + V +I + KV V T V D
Sbjct: 241 PTAMYRD---IQDKVHFNAQVIKIQQNDQKVT-VVYETLSKETPSVTAD 285
>d1ojta1 c.3.1.5 (A:117-275,A:401-470) Dihydrolipoamide
dehydrogenase {Neisseria meningitidis [TaxId: 487]}
Length = 229
Score = 38.4 bits (88), Expect = 8e-04
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 3/108 (2%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLP 61
D EYD +VLG G + + G KV ++R K GG ++ + + +
Sbjct: 4 DAEYDVVVLGGGPGGYSAAFAAADEGLKVAIVERYKTLGGVCLNVGCIPSKALLHNAAVI 63
Query: 62 DEVTFGRG---RDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVE 106
DEV + +L L A V + G+ + + V+
Sbjct: 64 DEVRHLAANGIKYPEPELDIDMLRAYKDGVVSRLTGGLAGMAKSRKVD 111
>d2ivda1 c.3.1.2 (A:10-306,A:415-464) Protoporphyrinogen oxidase
{Myxococcus xanthus [TaxId: 34]}
Length = 347
Score = 37.0 bits (84), Expect = 0.003
Identities = 46/294 (15%), Positives = 81/294 (27%), Gaps = 44/294 (14%)
Query: 6 DAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
+ V+G G+ SG+ L G + ++ + GG +
Sbjct: 2 NVAVVGGGI-----SGLAVAHHLRSRGTDAVLLESSARLGGAVGTHA------------- 43
Query: 61 PDEVTFGRGRDWNVDLIPKFLMANGSLVKLLIHTGVTRYLEFKSVEGS--YVFKGGKISK 118
+G + FL + L + + YV+ G++
Sbjct: 44 LAGYLVEQGPNS-------FLDREPATRALAAALNLEGRIRAADPAAKRRYVYTRGRLRS 96
Query: 119 VPVDQKEALASDLMGLFEKRRFRNFLV-------YIQEFSEADPKTWKDINPQSATTAQL 171
VP LASD++ L + R L + + + Q A
Sbjct: 97 VPASPPAFLASDILPLGARLRVAGELFSRRAPEGVDESLAAFGRRHLGHRATQVLLDAVQ 156
Query: 172 YDKFGLDPNTKDFTGHALALYRDDEYINDLAIHTIRRIKLYSDSLARYGKSPYLYPMYGL 231
+ D L + + L + IR K + G +P L
Sbjct: 157 TGIYAGDVEQLSVAATFPMLVKMEREHRSLILGAIRAQKAQRQAALPAGTAPKLSGALST 216
Query: 232 --GELPQSFARLSAIYGGTYMLDKPVDEIVIENGKVVGV---RSGTEIARCKQV 280
G L L+A G + V+ + E+G + QV
Sbjct: 217 FDGGLQVLIDALAASLGDAAHVGARVEGLAREDGGWRLIIEEHGRRAELSVAQV 270
>d3coxa1 c.3.1.2 (A:5-318,A:451-506) Cholesterol oxidase of GMC
family {Brevibacterium sterolicum [TaxId: 1702]}
Length = 370
Score = 34.9 bits (79), Expect = 0.018
Identities = 8/55 (14%), Positives = 21/55 (38%), Gaps = 4/55 (7%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKF 56
+ A+V+G+G + + L+ +G ++ G + ++F
Sbjct: 5 GDRVPALVIGSGYGGAVAALRLTQAGIPTQIVEM----GRSWDTPGSDGKIFCGM 55
>d1y0pa2 c.3.1.4 (A:111-361,A:512-568) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 308
Score = 34.6 bits (78), Expect = 0.021
Identities = 11/43 (25%), Positives = 21/43 (48%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44
+ D +V+G+G + + SG KV+ I++ GG +
Sbjct: 14 HDTVDVVVVGSGGAGFSAAISATDSGAKVILIEKEPVIGGNAK 56
>d1v59a1 c.3.1.5 (A:1-160,A:283-355) Dihydrolipoamide
dehydrogenase {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 233
Score = 34.1 bits (77), Expect = 0.022
Identities = 6/42 (14%), Positives = 19/42 (45%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42
+++ +D +++G G + + + G +++ GG
Sbjct: 2 INKSHDVVIIGGGPAGYVAAIKAAQLGFNTACVEKRGKLGGT 43
>d1i8ta1 c.4.1.3 (A:1-244,A:314-367) UDP-galactopyranose mutase,
N-terminal domain {Escherichia coli [TaxId: 562]}
Length = 298
Score = 33.6 bits (76), Expect = 0.032
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
YD I++G+GL + + L KKVL I++ + GG + + K+G+ +
Sbjct: 2 YDYIIVGSGLFGAVCANELKKLNKKVLVIEKRNHIGGNAYTEDCEGIQIHKYGAHI 57
>d1ryia1 c.3.1.2 (A:1-218,A:307-364) Glycine oxidase ThiO
{Bacillus sp. [TaxId: 1409]}
Length = 276
Score = 33.6 bits (75), Expect = 0.040
Identities = 9/44 (20%), Positives = 19/44 (43%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44
M Y+A+V+G G+ ++ L+ K + G ++
Sbjct: 1 MKRHYEAVVIGGGIIGSAIAYYLAKENKNTALFESGTMGGRTTS 44
>d1dxla1 c.3.1.5 (A:4-152,A:276-347) Dihydrolipoamide
dehydrogenase {Garden pea (Pisum sativum) [TaxId:
3888]}
Length = 221
Score = 33.3 bits (75), Expect = 0.041
Identities = 9/40 (22%), Positives = 18/40 (45%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42
+E D +++G G + + + G K I++ GG
Sbjct: 2 DENDVVIIGGGPGGYVAAIKAAQLGFKTTCIEKRGALGGT 41
>d2gqfa1 c.3.1.8 (A:1-194,A:343-401) Hypothetical protein HI0933
{Haemophilus influenzae [TaxId: 727]}
Length = 253
Score = 32.9 bits (74), Expect = 0.061
Identities = 11/41 (26%), Positives = 17/41 (41%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41
M + + I++G G + L+ GK V D K G
Sbjct: 1 MSQYSENIIIGAGAAGLFCAAQLAKLGKSVTVFDNGKKIGR 41
>d1n4wa1 c.3.1.2 (A:9-318,A:451-507) Cholesterol oxidase of GMC
family {Streptomyces sp. [TaxId: 1931]}
Length = 367
Score = 33.0 bits (74), Expect = 0.064
Identities = 8/45 (17%), Positives = 18/45 (40%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPL 49
A+V+GTG + + L +G + L ++ + +
Sbjct: 3 VPAVVIGTGYGAAVSALRLGEAGVQTLMLEMGQLWNQPGPDGNIF 47
>d1kdga1 c.3.1.2 (A:215-512,A:694-755) Flavoprotein domain of
flavocytochrome cellobiose dehydrogenase (CDH),
FAD-binding domain {Fungus (Phanerochaete
chrysosporium) [TaxId: 5306]}
Length = 360
Score = 33.1 bits (74), Expect = 0.069
Identities = 13/28 (46%), Positives = 17/28 (60%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVL 31
YD I++G G I + LS +GKKVL
Sbjct: 2 PYDYIIVGAGPGGIIAADRLSEAGKKVL 29
>d1d4ca2 c.3.1.4 (A:103-359,A:506-570) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
putrefaciens [TaxId: 24]}
Length = 322
Score = 32.3 bits (72), Expect = 0.12
Identities = 9/43 (20%), Positives = 20/43 (46%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44
E D +++G+G + +G KV+ +++ GG +
Sbjct: 21 KETTDVVIIGSGGAGLAAAVSARDAGAKVILLEKEPIPGGNTK 63
>d1qo8a2 c.3.1.4 (A:103-359,A:506-565) Flavocytochrome c3
(respiratory fumarate reductase) {Shewanella
frigidimarina [TaxId: 56812]}
Length = 317
Score = 31.5 bits (70), Expect = 0.16
Identities = 11/43 (25%), Positives = 18/43 (41%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44
E +V+G G S +G V+ +D+ + GG S
Sbjct: 17 SETTQVLVVGAGSAGFNASLAAKKAGANVILVDKAPFSGGNSM 59
>d1mo9a1 c.3.1.5 (A:2-192,A:314-383) NADH-dependent 2-ketopropyl
coenzyme M oxidoreductase/carboxylase {Xanthobacter
sp., py2 [TaxId: 35809]}
Length = 261
Score = 31.5 bits (70), Expect = 0.17
Identities = 14/38 (36%), Positives = 18/38 (47%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40
EYDAI +G G S L G + L +DR + G
Sbjct: 41 REYDAIFIGGGAAGRFGSAYLRAMGGRQLIVDRWPFLG 78
>d2i0za1 c.3.1.8 (A:1-192,A:362-420) Flavoprotein BC4706 {Bacillus
cereus [TaxId: 1396]}
Length = 251
Score = 31.6 bits (70), Expect = 0.17
Identities = 12/42 (28%), Positives = 19/42 (45%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45
YD IV+G G + + + G VL +D+ G + A
Sbjct: 2 HYDVIVIGGGPSGLMAAIGAAEEGANVLLLDKGNKLGRKLAI 43
>d1cf3a1 c.3.1.2 (A:3-324,A:521-583) Glucose oxidase {Aspergillus
niger [TaxId: 5061]}
Length = 385
Score = 31.4 bits (70), Expect = 0.20
Identities = 16/81 (19%), Positives = 27/81 (33%), Gaps = 11/81 (13%)
Query: 2 DEEYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRNKYYGGESASITPLEELFSKFGSTL 60
D I+ G GL + L+ + VL I+ G + P+ E + +G
Sbjct: 15 GRTVDYIIAGGGLTGLTTAARLTENPNISVLVIES----GSYESDRGPIIEDLNAYGD-- 68
Query: 61 PDEVTFGRGRDWNVDLIPKFL 81
FG D + +
Sbjct: 69 ----IFGSSVDHAYETVELAT 85
>d1ju2a1 c.3.1.2 (A:1-293,A:464-521) Hydroxynitrile lyase {Almond
(Prunus dulcis) [TaxId: 3755]}
Length = 351
Score = 31.0 bits (69), Expect = 0.26
Identities = 17/77 (22%), Positives = 30/77 (38%), Gaps = 5/77 (6%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFS----KF 56
++ YD +++G G C L+ LS KVL ++R +T +++
Sbjct: 23 LEGSYDYVIVGGGTSGCPLAATLS-EKYKVLVLERGSLPTAYPNVLTADGFVYNLQQEDD 81
Query: 57 GSTLPDEVTFGRGRDWN 73
G T + G D
Sbjct: 82 GKTPVERFVSEDGIDNV 98
>d2hqsa2 c.51.2.1 (A:29-162) TolB, N-terminal domain {Escherichia
coli [TaxId: 562]}
Length = 134
Score = 29.6 bits (66), Expect = 0.30
Identities = 12/64 (18%), Positives = 18/64 (28%), Gaps = 2/64 (3%)
Query: 111 FKGGKISKVPVDQKEALASDLM--GLFEKRRFRNFLVYIQEFSEADPKTWKDINPQSATT 168
F+ P D +A+DL G F E P W + +
Sbjct: 15 FQWAGPGAAPEDIGGIVAADLRNSGKFNPLDRARLPQQPGSAQEVQPAAWSALGIDAVVV 74
Query: 169 AQLY 172
Q+
Sbjct: 75 GQVT 78
>d3lada1 c.3.1.5 (A:1-158,A:278-348) Dihydrolipoamide
dehydrogenase {Azotobacter vinelandii [TaxId: 354]}
Length = 229
Score = 30.0 bits (66), Expect = 0.51
Identities = 11/42 (26%), Positives = 22/42 (52%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESA 44
+++D IV+G G + + + G K I++ K G++A
Sbjct: 2 QKFDVIVIGAGPGGYVAAIKSAQLGLKTALIEKYKGKEGKTA 43
>d1gpea1 c.3.1.2 (A:1-328,A:525-587) Glucose oxidase {Penicillium
amagasakiense [TaxId: 63559]}
Length = 391
Score = 29.9 bits (66), Expect = 0.72
Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 11/74 (14%)
Query: 1 MDEEYDAIVLGTGLKECILSGMLSVSGK-KVLHIDRNKYYGGESASITPLEELFSKFGST 59
+ YD I+ G GL ++ L+ + K KVL I++ G ++ + E + +G
Sbjct: 21 AGKTYDYIIAGGGLTGLTVAAKLTENPKIKVLVIEK----GFYESNDGAIIEDPNAYGQ- 75
Query: 60 LPDEVTFGRGRDWN 73
FG D N
Sbjct: 76 -----IFGTTVDQN 84
>d2gf3a1 c.3.1.2 (A:1-217,A:322-385) Sarcosine oxidase {Bacillus
sp., strain b0618 [TaxId: 1409]}
Length = 281
Score = 29.3 bits (64), Expect = 0.78
Identities = 10/41 (24%), Positives = 15/41 (36%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45
+D IV+G G L+ G K L +D +
Sbjct: 4 FDVIVVGAGSMGMAAGYQLAKQGVKTLLVDAFDPPHTNGSH 44
>d1ebda1 c.3.1.5 (A:7-154,A:272-346) Dihydrolipoamide
dehydrogenase {Bacillus stearothermophilus [TaxId:
1422]}
Length = 223
Score = 28.7 bits (63), Expect = 1.1
Identities = 8/37 (21%), Positives = 18/37 (48%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40
E + +V+G G + + + G+KV +++ G
Sbjct: 3 ETETLVVGAGPGGYVAAIRAAQLGQKVTIVEKGNLGG 39
>d1onfa1 c.3.1.5 (A:1-153,A:271-376) Glutathione reductase
{Plasmodium falciparum [TaxId: 5833]}
Length = 259
Score = 28.9 bits (63), Expect = 1.2
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 5 YDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40
YD IV+G G + + KV +++++ G
Sbjct: 2 YDLIVIGGGSGGMAAARRAARHNAKVALVEKSRLGG 37
>d1chua2 c.3.1.4 (A:2-237,A:354-422) L-aspartate oxidase
{Escherichia coli [TaxId: 562]}
Length = 305
Score = 28.7 bits (63), Expect = 1.3
Identities = 7/47 (14%), Positives = 21/47 (44%), Gaps = 9/47 (19%)
Query: 2 DEEYDAIVLGTGLKECILSGM---LSVS-GKKVLHIDRNKYYGGESA 44
+ D +++G+G +G+ L ++ +V+ + + G +
Sbjct: 5 EHSCDVLIIGSG-----AAGLSLALRLADQHQVIVLSKGPVTEGSTF 46
>d3grsa1 c.3.1.5 (A:18-165,A:291-363) Glutathione reductase {Human
(Homo sapiens) [TaxId: 9606]}
Length = 221
Score = 27.9 bits (61), Expect = 1.8
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40
YD +V+G G + + G + ++ +K G
Sbjct: 2 ASYDYLVIGGGSGGLASARRAAELGARAAVVESHKLGG 39
>d2bs2a2 c.3.1.4 (A:1-250,A:372-457) Fumarate reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 336
Score = 28.2 bits (61), Expect = 1.8
Identities = 9/47 (19%), Positives = 17/47 (36%), Gaps = 10/47 (21%)
Query: 3 EEYDAIVLGTGLKECILSGM-----LSVSGKKVLHIDRNKYYGGESA 44
+ D++V+G G L+G+ G + + SA
Sbjct: 4 QYCDSLVIGGG-----LAGLRAAVATQQKGLSTIVLSLIPVKRSHSA 45
>d1gesa1 c.3.1.5 (A:3-146,A:263-335) Glutathione reductase
{Escherichia coli [TaxId: 562]}
Length = 217
Score = 28.0 bits (61), Expect = 2.2
Identities = 9/37 (24%), Positives = 15/37 (40%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYG 40
YD I +G G ++ G+K I+ + G
Sbjct: 2 HYDYIAIGGGSGGIASINRAAMYGQKCALIEAKELGG 38
>d2gmha1 c.3.1.2 (A:4-236,A:336-482) Electron transfer
flavoprotein-ubiquinone oxidoreductase, EFT-QO {Pig (Sus
scrofa) [TaxId: 9823]}
Length = 380
Score = 28.3 bits (62), Expect = 2.3
Identities = 13/86 (15%), Positives = 25/86 (29%), Gaps = 11/86 (12%)
Query: 1 MDEEYDAIVLGTGLKECILSGML------SVSGKKVLHIDRNKY-----YGGESASITPL 49
EE D +++G G + L +V +++ + G
Sbjct: 29 FAEEADVVIVGAGPAGLSAATRLKQLAAQHEKDLRVCLVEKAAHIGAHTLSGACLDPRAF 88
Query: 50 EELFSKFGSTLPDEVTFGRGRDWNVD 75
EELF + T + +
Sbjct: 89 EELFPDWKEKGAPLNTPVTEDRFGIL 114
>d1lvla1 c.3.1.5 (A:1-150,A:266-335) Dihydrolipoamide
dehydrogenase {Pseudomonas putida [TaxId: 303]}
Length = 220
Score = 27.3 bits (59), Expect = 3.1
Identities = 5/39 (12%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGE 42
+ +++G G + + G + ++ GG
Sbjct: 5 QTTLLIIGGGPGGYVAAIRAGQLGIPTVLVEGQ-ALGGT 42
>d1h6va1 c.3.1.5 (A:10-170,A:293-366) Mammalian thioredoxin
reductase {Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 235
Score = 27.4 bits (59), Expect = 3.2
Identities = 8/38 (21%), Positives = 16/38 (42%)
Query: 4 EYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGG 41
++D I++G G + + KKV+ +D
Sbjct: 3 DFDLIIIGGGSGGLAAAKEAAKFDKKVMVLDFVTPTPL 40
>d1wmub_ a.1.1.2 (B:) Hemoglobin, beta-chain {Aldabra giant tortoise
(Geochelone gigantea) [TaxId: 167804]}
Length = 146
Score = 26.6 bits (58), Expect = 4.1
Identities = 11/92 (11%), Positives = 29/92 (31%), Gaps = 8/92 (8%)
Query: 149 EFSEADP----KTWKDINPQSATTAQLYDKFGLDPNTKDFTGHALALYRDDEYINDLAI- 203
++ + W +N L + P T+ F L + +++ +
Sbjct: 2 HWTSEEKQYITSLWAKVNVGEVGGEALARLLIVYPWTQRFFASFGNLSSANAILHNAKVL 61
Query: 204 -HTIRRIKLYSDSLARYGKSPYLYPMYGLGEL 234
H + + + +++ + L EL
Sbjct: 62 AHGQKVLTSFGEAVKNLDNIKKTFAQ--LSEL 91
>d1neka2 c.3.1.4 (A:1-235,A:356-450) Succinate dehydogenase
{Escherichia coli [TaxId: 562]}
Length = 330
Score = 27.1 bits (59), Expect = 4.4
Identities = 10/43 (23%), Positives = 19/43 (44%)
Query: 3 EEYDAIVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESAS 45
E+DA+V+G G + +S SG+ + + + S
Sbjct: 6 REFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVS 48
>d1lama2 c.50.1.1 (A:1-159) Leucine aminopeptidase (Aminopeptidase
A), N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Length = 159
Score = 26.3 bits (57), Expect = 5.5
Identities = 14/97 (14%), Positives = 28/97 (28%), Gaps = 9/97 (9%)
Query: 106 EGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDINPQS 165
K GK ++ + ++GL +K + QE + +
Sbjct: 41 ISGPPLKAGKTRTFYGLHEDFPSVVVVGLGKKTAGIDE----QENWHEGKENIRAAVAAG 96
Query: 166 ATTAQLYDKFGLDPNTKDF-----TGHALALYRDDEY 197
Q + ++ + G L LY D+
Sbjct: 97 CRQIQDLEIPSVEVDPCGDAQAAAEGAVLGLYEYDDL 133
>d1m7ja2 b.92.1.6 (A:420-480) N-acyl-D-aminoacid amidohydrolase
{Alcaligenes faecalis [TaxId: 511]}
Length = 61
Score = 24.7 bits (54), Expect = 6.0
Identities = 5/20 (25%), Positives = 8/20 (40%)
Query: 257 EIVIENGKVVGVRSGTEIAR 276
V E+ G +G + R
Sbjct: 42 AAVWEDQSFTGQHAGRVLNR 61
>d1hq0a_ d.194.1.1 (A:) Type 1 cytotoxic necrotizing factor,
catalytic domain {Escherichia coli [TaxId: 562]}
Length = 295
Score = 26.4 bits (58), Expect = 6.9
Identities = 10/40 (25%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 232 GELPQSFARLSAIYGGTYMLDKPVDEIVIENGK--VVGVR 269
GE+P + L + Y Y L I + N G++
Sbjct: 86 GEIPSDSSSLGSTYWKKYNLTNETSIIRVSNSARGANGIK 125
>d1m7sa_ e.5.1.1 (A:) Catalase I {Pseudomonas syringae [TaxId: 317]}
Length = 484
Score = 26.4 bits (58), Expect = 7.6
Identities = 16/66 (24%), Positives = 32/66 (48%), Gaps = 1/66 (1%)
Query: 102 FKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDI 161
+KS++G ++++V L +DL+G +K F + +Y+Q + + D
Sbjct: 212 WKSLQGIKNLDPKEVAQVQSKDYSHLTNDLVGAIKKGDFPKWDLYVQVLKPEELAKF-DF 270
Query: 162 NPQSAT 167
+P AT
Sbjct: 271 DPLDAT 276
>d2bi7a1 c.4.1.3 (A:2-247,A:317-384) UDP-galactopyranose mutase,
N-terminal domain {Klebsiella pneumoniae [TaxId: 573]}
Length = 314
Score = 26.3 bits (57), Expect = 7.8
Identities = 10/40 (25%), Positives = 19/40 (47%)
Query: 8 IVLGTGLKECILSGMLSVSGKKVLHIDRNKYYGGESASIT 47
+++G G ++ L+ G +V ID+ + GG S
Sbjct: 6 LIVGAGFSGAVIGRQLAEKGHQVHIIDQRDHIGGNSYDAR 45
>d1khba1 c.91.1.1 (A:260-622) Cytosolic phosphoenolpyruvate
carboxykinase (GTP-hydrolyzing) {Human (Homo sapiens)
[TaxId: 9606]}
Length = 363
Score = 26.3 bits (58), Expect = 8.8
Identities = 9/47 (19%), Positives = 22/47 (46%), Gaps = 3/47 (6%)
Query: 19 LSGMLSVSGKKVLHIDRNKYYGGESASITPLEELFSKFGSTLPDEVT 65
L G+ ++ ++ I + +++ E I + L + + LP E+
Sbjct: 307 LKGLGHINMMELFSISK-EFWDKEVEDIE--KYLVDQVNADLPCEIE 350
>d1dgfa_ e.5.1.1 (A:) Catalase I {Human (Homo sapiens) [TaxId:
9606]}
Length = 497
Score = 26.4 bits (58), Expect = 9.3
Identities = 13/78 (16%), Positives = 30/78 (38%), Gaps = 1/78 (1%)
Query: 102 FKSVEGSYVFKGGKISKVPVDQKEALASDLMGLFEKRRFRNFLVYIQEFSEADPKTWKDI 161
+K+ +G +++ + + DL ++ ++ YIQ + +T+
Sbjct: 232 YKTDQGIKNLSVEDAARLSQEDPDYGIRDLFNAIATGKYPSWTFYIQVMTFNQAETF-PF 290
Query: 162 NPQSATTAQLYDKFGLDP 179
NP T + + L P
Sbjct: 291 NPFDLTKVWPHKDYPLIP 308
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.137 0.401
Gapped
Lambda K H
0.267 0.0415 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,711,877
Number of extensions: 83192
Number of successful extensions: 312
Number of sequences better than 10.0: 1
Number of HSP's gapped: 302
Number of HSP's successfully gapped: 56
Length of query: 441
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 353
Effective length of database: 1,199,356
Effective search space: 423372668
Effective search space used: 423372668
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)