BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2623
(707 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|260790203|ref|XP_002590133.1| hypothetical protein BRAFLDRAFT_114751 [Branchiostoma floridae]
gi|229275321|gb|EEN46144.1| hypothetical protein BRAFLDRAFT_114751 [Branchiostoma floridae]
Length = 541
Score = 355 bits (912), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 197/472 (41%), Positives = 276/472 (58%), Gaps = 45/472 (9%)
Query: 215 QNNIMNWLKLSS---ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA 271
++++++ L L + +C + +Q+FSVI AFDIP+FDY+ + KKF R L
Sbjct: 57 ESSMIDRLTLEAAVNDCVQGGEEDSDQVFSVIDAFDIPKFDYNSERKKFMPSTAPRSLHG 116
Query: 272 DSDAKSKLFRERYNIIRQRTLRHSLFN----NINP--NADSVKLDWVEYLMSLTNVNHKT 325
+ K++LFR+RY ++ QRT RH LF NP +L VEYL+ +
Sbjct: 117 QATDKAQLFRDRYTVLFQRTSRHELFTPPVMGANPVHQTKKFQLRPVEYLLGSVAKLGEI 176
Query: 326 VVLGMISQLKENRYFLEDPTGIVQLDLSQT----------------SYHPGLYTENCIVL 369
+VLGM++QLK Y+LEDPTG V++DLSQT ++H GL+TENC VL
Sbjct: 177 IVLGMVTQLKPGSYYLEDPTGAVKMDLSQTISFSLTRRAISLTALYNFHNGLFTENCFVL 236
Query: 370 VEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENA 429
EG Y+DQ+ HV A GFPPPE +K +R YFGN N +GGPS K+ ++ +E+ NE+A
Sbjct: 237 AEGWYEDQVFHVTAFGFPPPEPAKTTRAYFGNINFFGGPSATCAKASTKLRVIERENEDA 296
Query: 430 MIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNS-TMATNPCRVQYCSQEILVVREELLS 488
MIV LSDV LD+ KV L T + P + + N + S I +RE
Sbjct: 297 MIVFLSDVWLDDSKVMEKLRVLFTG-YSEICPTAFVLCGNFTSSPFGSSHIKTLRESF-- 353
Query: 489 KMCRNCI-KFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVL-SPALPKFITSE 546
+ N I +FP + S+ F+ VP G VL P +P +T E
Sbjct: 354 RGLGNLIAQFPSLVESSR------------FIFVPGSQDPGP--GNVLPRPNIPDCVTEE 399
Query: 547 FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQG 606
+ VP +T TNPCR+QYC+QEI+V RE++++KMCRNC+KFP + DIS HFV+TL SQG
Sbjct: 400 LRRKVPTATFTTNPCRIQYCTQEIVVFREDMVTKMCRNCVKFPSDRDISTHFVKTLASQG 459
Query: 607 TLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVF 658
L LPL++ PVYWS AL +YPLPD+V++ D+ +AY+ + DC F NPV+
Sbjct: 460 HLCPLPLHVEPVYWSHDHALRVYPLPDVVVVADKFDAYSNTHVDCTFANPVY 511
Score = 89.0 bits (219), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 48/121 (39%), Positives = 68/121 (56%), Gaps = 6/121 (4%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLF 74
+E N+C + +Q+FSVI AFDIP+FDY+ + KKF R L + K++LF
Sbjct: 66 LEAAVNDCVQGGEEDSDQVFSVIDAFDIPKFDYNSERKKFMPSTAPRSLHGQATDKAQLF 125
Query: 75 RERYNIIRQRTLRHSLFN----NINP--NADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 128
R+RY ++ QRT RH LF NP +L VEYL+ + +VLGM++QL
Sbjct: 126 RDRYTVLFQRTSRHELFTPPVMGANPVHQTKKFQLRPVEYLLGSVAKLGEIIVLGMVTQL 185
Query: 129 K 129
K
Sbjct: 186 K 186
>gi|291225848|ref|XP_002732910.1| PREDICTED: DNA-directed DNA polymerase epsilon 2-like [Saccoglossus
kowalevskii]
Length = 521
Score = 342 bits (876), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 183/440 (41%), Positives = 265/440 (60%), Gaps = 29/440 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
EC +QIF+VI+ F+ P F Y+ KKF L ++D+K+ +FRERYNI
Sbjct: 72 ECNADSEEDTDQIFNVINVFNAPHFVYNYARKKFVKSTSVPSLHGNADSKTAIFRERYNI 131
Query: 287 IRQRTLRHSLFNNINPNA------DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYF 340
+ QRT RH+LF A +L VE+L+ T+ + +VLGM++QLKE +YF
Sbjct: 132 LHQRTSRHNLFTAPVTGAPQEQKGKKFQLKPVEFLLGSTSKLGEIIVLGMLTQLKEGKYF 191
Query: 341 LEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG 400
LEDPTG VQLDLSQ +H GL+TENC VL EG Y+D++ H++A GFPPPE + +R YFG
Sbjct: 192 LEDPTGAVQLDLSQADFHSGLFTENCFVLAEGWYEDEVFHINAFGFPPPEPADTTRSYFG 251
Query: 401 NQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGF- 459
+ N +GGPS S+K+ ++ +EK+NE+A+ V LSDV LD +VR L + F GF
Sbjct: 252 SINFFGGPSATSVKTSQKLKTIEKDNEDAIFVFLSDVWLDQLQVRQKL----QALFSGFA 307
Query: 460 -VPNSTMA--TNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
VP + N Y S I +++ L ++ +FP SK
Sbjct: 308 DVPPTAFVFCGNFSSAPYGSHHIKALKDS-LHELSVILTEFPTLVKESK----------F 356
Query: 517 IFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
+F+ P+ G + + P L + IT EF+ VP S ATNPCR+QYC+QEI+V +E+
Sbjct: 357 VFVPGPQDPGPGHILPR---PPLSECITEEFRKKVPTSIFATNPCRIQYCTQEIVVFKED 413
Query: 577 LLSKMCRNCIKFPE-EGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
+++KMCRNC++FP +I HF +T++SQG L LPL++ P+YW+ AL +YPLPDL+
Sbjct: 414 IVNKMCRNCVRFPSASSEIPAHFAKTVISQGHLCPLPLHVSPIYWAYDNALRIYPLPDLI 473
Query: 636 ILGDQLNAYTIQNTDCIFIN 655
+ D+ A+T+ + +CI N
Sbjct: 474 VFADKYEAFTVNSVNCICTN 493
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/131 (36%), Positives = 70/131 (53%), Gaps = 6/131 (4%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
+P IE +EC +QIF+VI+ F+ P F Y+ KKF L +
Sbjct: 58 SPMIDQSTIEKAIHECNADSEEDTDQIFNVINVFNAPHFVYNYARKKFVKSTSVPSLHGN 117
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFNNINPNA------DSVKLDWVEYLMSLTNVNHKTV 120
+D+K+ +FRERYNI+ QRT RH+LF A +L VE+L+ T+ + +
Sbjct: 118 ADSKTAIFRERYNILHQRTSRHNLFTAPVTGAPQEQKGKKFQLKPVEFLLGSTSKLGEII 177
Query: 121 VLGMISQLKEN 131
VLGM++QLKE
Sbjct: 178 VLGMLTQLKEG 188
>gi|57529888|ref|NP_001006493.1| DNA polymerase epsilon subunit 2 [Gallus gallus]
gi|73919257|sp|Q5ZKQ6.1|DPOE2_CHICK RecName: Full=DNA polymerase epsilon subunit 2; AltName: Full=DNA
polymerase II subunit 2; AltName: Full=DNA polymerase
epsilon subunit B
gi|53130716|emb|CAG31687.1| hypothetical protein RCJMB04_9k18 [Gallus gallus]
Length = 527
Score = 340 bits (872), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 187/445 (42%), Positives = 272/445 (61%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
EC + + + +F++I AFDIP++ Y+PD K+F + L + K++LFRE
Sbjct: 73 ECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY+I++QRT RH LF I+P N +L VE L+ T + +VLGMI+QLKE
Sbjct: 133 RYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+YFLEDPTG+VQLDLS+ +H GLYTE+C VL EG Y+D++ HV+A GFPP E S +R
Sbjct: 193 GKYFLEDPTGVVQLDLSKAQFHSGLYTESCFVLAEGWYEDEVFHVNAFGFPPTEPSATTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
++GN N +GGPS S+K+ ++ ++E NE+AM V LSDV LD +V E + + F
Sbjct: 253 AFYGNINFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDVWLDQAEV----LEKLHTMF 308
Query: 457 QGF--VPNST--MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y +I ++ L + C ++P S H S
Sbjct: 309 SGYSSAPPTCFFFCGNFSSAPYGKNQIQSLKGSLKALADIIC-EYP-----SIHKSSR-- 360
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+F+ P+ G+V + P L + IT EF+ VP S TNPCRVQYC+QEI++
Sbjct: 361 ---FVFVPGPEDPGPGSVLPR---PPLAENITQEFRQLVPFSVFTTNPCRVQYCTQEIII 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PD++++ D+ + +T+ NTDC+ INP
Sbjct: 475 PDMLVIADKYDPFTVTNTDCLCINP 499
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAK 70
+E EC + + + +F++I AFDIP++ Y+PD K+F + L + K
Sbjct: 67 VEAAVQECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDK 126
Query: 71 SKLFRERYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY+I++QRT RH LF I+P N +L VE L+ T + +VLGM
Sbjct: 127 AELFRERYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGM 186
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 187 ITQLKEG 193
>gi|355712641|gb|AES04416.1| polymerase , epsilon 2 [Mustela putorius furo]
Length = 519
Score = 338 bits (866), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 182/445 (40%), Positives = 264/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP+F Y + KKF + L + K++LFRE
Sbjct: 72 ECSQSVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 131
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF + + +L VE L+ T +VLGMI+QLKE
Sbjct: 132 RYTILHQRTHRHELFTPPVIGSYPDETGSKFQLKTVETLLGSTTKIGDVIVLGMITQLKE 191
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 192 GKFFLEDPTGTVQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 251
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD +V L + F
Sbjct: 252 AYYGNVNFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQGEVLGKL----HTMF 307
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P S+ V
Sbjct: 308 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPNIHQSSRFVFVPGP 366
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 367 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 413
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 414 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 473
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 474 PDLLVIADKYDPFTLTNTECLCINP 498
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 67/128 (52%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E IF++I AFDIP+F Y + KKF + L +
Sbjct: 65 VVEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARD 124
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF + + +L VE L+ T +VLG
Sbjct: 125 KAELFRERYTILHQRTHRHELFTPPVIGSYPDETGSKFQLKTVETLLGSTTKIGDVIVLG 184
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 185 MITQLKEG 192
>gi|402876079|ref|XP_003901808.1| PREDICTED: DNA polymerase epsilon subunit 2 [Papio anubis]
Length = 502
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 183/446 (41%), Positives = 268/446 (60%), Gaps = 33/446 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L VE L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P+ + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPSPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPV 657
PDL+++ D+ + +TI NT+C+ INPV
Sbjct: 475 PDLLVIADKYDPFTITNTECLCINPV 500
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L VE L+ T +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|338718008|ref|XP_001496330.3| PREDICTED: DNA polymerase epsilon subunit 2-like [Equus caballus]
Length = 509
Score = 337 bits (865), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 182/445 (40%), Positives = 265/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 55 ECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 114
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 115 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 174
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE+C VL EG ++DQ+ HV A GFPP E S +R
Sbjct: 175 GKFFLEDPTGTVQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVSAFGFPPTEPSSITR 234
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V LSDV LD +V L + F
Sbjct: 235 AYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFLSDVWLDQVEVLEKL----HTMF 290
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P S+ V
Sbjct: 291 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPNIHQSSRFVFVPGP 349
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + +TSEF+ VP S TNPCR+QYC+QEI+V
Sbjct: 350 EDPGFGSILPR-------------PPLAESVTSEFRQRVPFSVFTTNPCRIQYCTQEIIV 396
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 397 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 456
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+CI +NP
Sbjct: 457 PDLLVIADKYDPFTLTNTECICMNP 481
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAK 70
+E EC ++ + E IF++I AFDIP+F Y+ + KKF + L + K
Sbjct: 49 VEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDK 108
Query: 71 SKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY I+ QRT RH LF ++ + + +L +E L+ T +VLGM
Sbjct: 109 AELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGM 168
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 169 ITQLKEG 175
>gi|403277942|ref|XP_003930601.1| PREDICTED: DNA polymerase epsilon subunit 2 [Saimiri boliviensis
boliviensis]
Length = 505
Score = 337 bits (863), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 181/446 (40%), Positives = 266/446 (59%), Gaps = 33/446 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP F Y+ + KKF + L + K++LFRE
Sbjct: 76 ECSQSVDETIEHVFNIIGAFDIPHFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 135
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +N + + +L +E L+ T ++LGMI+QLKE
Sbjct: 136 RYTILHQRTHRHELFTPPVIGSNTDESGSKFQLKTIETLLGSTTKIGDVIILGMITQLKE 195
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 196 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 255
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+G+ N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 256 AYYGSINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 311
Query: 457 QGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 312 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 370
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 371 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 417
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YPL
Sbjct: 418 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPL 477
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPV 657
PDL+++ D+ + +T+ NT+C+ INPV
Sbjct: 478 PDLLVIADKYDPFTMTNTECLCINPV 503
Score = 79.3 bits (194), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP F Y+ + KKF + L +
Sbjct: 69 VVEAAVQECSQSVDETIEHVFNIIGAFDIPHFVYNSERKKFLPLLMTNHPAPNLFGTARD 128
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF +N + + +L +E L+ T ++LG
Sbjct: 129 KAELFRERYTILHQRTHRHELFTPPVIGSNTDESGSKFQLKTIETLLGSTTKIGDVIILG 188
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 189 MITQLKEG 196
>gi|410962206|ref|XP_003987665.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 1 [Felis catus]
Length = 527
Score = 335 bits (858), Expect = 7e-89, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 264/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + + IF++I AFDIP+F Y + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETMDHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + +L VE L+ T +VLGMI+QLKE
Sbjct: 133 RYIILHQRTHRHELFTPPVIGSHPDETGSKFQLKTVETLLGSTTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLD+S+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDISKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD +V L + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQGEVLGKL----HTMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPNIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITDEFRQRVPFSIFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ +NP
Sbjct: 475 PDLLVIADKYDPFTVTNTECLCMNP 499
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + + IF++I AFDIP+F Y + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETMDHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + +L VE L+ T +VLG
Sbjct: 126 KAELFRERYIILHQRTHRHELFTPPVIGSHPDETGSKFQLKTVETLLGSTTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|297297779|ref|XP_001095940.2| PREDICTED: DNA polymerase epsilon subunit 2 [Macaca mulatta]
Length = 549
Score = 334 bits (857), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 181/445 (40%), Positives = 266/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 100 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 159
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 160 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 219
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 220 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 279
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 280 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 335
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 336 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 394
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 395 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 441
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 442 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 501
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +TI NT+C+ INP
Sbjct: 502 PDLLVIADKYDPFTITNTECLCINP 526
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 93 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 152
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 153 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLG 212
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 213 MITQLKEG 220
>gi|326921269|ref|XP_003206884.1| PREDICTED: DNA polymerase epsilon subunit 2-like, partial
[Meleagris gallopavo]
Length = 504
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 185/445 (41%), Positives = 270/445 (60%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
EC + + E +F++I AFDIP++ Y + K+F + L + K++LFRE
Sbjct: 50 ECSQASDETIENVFNIIGAFDIPRYIYSSERKRFLPLSMTNFPVPNLFGTARDKAELFRE 109
Query: 283 RYNIIRQRTLRHSLFNN----INPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY+I++QRT RH LF ++P+ K L VE L+ T + +VLGMI+QLKE
Sbjct: 110 RYSILQQRTHRHELFTPAAVVVHPDDSRSKFQLKTVETLLGNTVKVGEVIVLGMITQLKE 169
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+YFLEDPTG+VQLDLSQ +H GLYTE+C VL EG Y+D++ HV+A GFPP E S +R
Sbjct: 170 GKYFLEDPTGVVQLDLSQAQFHSGLYTESCFVLAEGWYEDEVFHVNAFGFPPTEPSATTR 229
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
++GN N +GGPS S+K+ ++ ++E NE+AM V LSDV LD +V E + + F
Sbjct: 230 AFYGNINFFGGPSSNSVKASAKLKQLEDENEDAMFVFLSDVWLDQAEV----LEKLHTMF 285
Query: 457 QGF--VPNST--MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y +I ++ L + C ++P S H S
Sbjct: 286 SGYSSAPPTCFFFCGNFSSAPYGKNQIQSLKGSLKALADIIC-EYP-----SIHKSSR-- 337
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+F+ P+ G+V + P L + IT EF+ VP S TNPCR+QYC+QEI++
Sbjct: 338 ---FVFVPGPEDPGPGSVLPR---PPLAENITQEFRQLVPFSVFTTNPCRIQYCTQEIII 391
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ AL +YP+
Sbjct: 392 FREDLVNKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPV 451
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PD++++ D+ + +T+ NTDC+ INP
Sbjct: 452 PDMLVIADKYDPFTVTNTDCLCINP 476
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAK 70
+E EC + + E +F++I AFDIP++ Y + K+F + L + K
Sbjct: 44 VEAAVQECSQASDETIENVFNIIGAFDIPRYIYSSERKRFLPLSMTNFPVPNLFGTARDK 103
Query: 71 SKLFRERYNIIRQRTLRHSLFNN----INPNADSVK--LDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY+I++QRT RH LF ++P+ K L VE L+ T + +VLGM
Sbjct: 104 AELFRERYSILQQRTHRHELFTPAAVVVHPDDSRSKFQLKTVETLLGNTVKVGEVIVLGM 163
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 164 ITQLKEG 170
>gi|296214941|ref|XP_002753916.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 1 [Callithrix
jacchus]
Length = 530
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 180/445 (40%), Positives = 267/445 (60%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 76 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 135
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +N + + +L +E L+ T +VLGMI+QLKE
Sbjct: 136 RYTILHQRTHRHELFTPPVIGSNPDESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 195
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG +++Q+ HV+A GFPP E S +R
Sbjct: 196 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEEQVFHVNAFGFPPTEPSSTTR 255
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+G+ N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 256 AYYGSINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 311
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V +
Sbjct: 312 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVSGP 370
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 371 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 417
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YPL
Sbjct: 418 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDYALRVYPL 477
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 478 PDLLVIADKYDPFTMTNTECLCINP 502
Score = 79.7 bits (195), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 69 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 128
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF +N + + +L +E L+ T +VLG
Sbjct: 129 KAELFRERYTILHQRTHRHELFTPPVIGSNPDESGSKFQLKTIETLLGSTTKIGDVIVLG 188
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 189 MITQLKEG 196
>gi|355693254|gb|EHH27857.1| hypothetical protein EGK_18164 [Macaca mulatta]
Length = 527
Score = 334 bits (856), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 181/445 (40%), Positives = 266/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKDQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +TI NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTITNTECLCINP 499
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|426233090|ref|XP_004010550.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 1 [Ovis aries]
Length = 527
Score = 333 bits (854), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 267/445 (60%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + + IF++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG +QLDLS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LEKLHIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N V Y ++ +++ L + C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSVPYGKNQVQALKDSLKTLADIIC-EYPNIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPFAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCINP 499
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + + IF++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|74182250|dbj|BAE42782.1| unnamed protein product [Mus musculus]
Length = 527
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 266/457 (58%), Gaps = 33/457 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++L+ E
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +++ + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ H +A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHANAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM VI+SDV LD +V E F
Sbjct: 253 AYYGNINFFGGPSNASVKTYTKLRQLEDENKDAMFVIVSDVWLDQVQV----LEKFHVMF 308
Query: 457 QGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L S C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIIC-EYPSIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT EF+ VP S TNPCR+QYC+QEI++
Sbjct: 368 EDPGFGSILPR-------------PPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIII 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPV+W+ L +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSSLDIPTHFVKTILSQGHLAPLPLYVCPVHWAYDYTLRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PDL+++ D+ + +T+ NTDC+ INP AF+V
Sbjct: 475 PDLLVIADKYDPFTVTNTDCLCINPGSFPRSEFAFKV 511
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+ ERY I+ QRT RH LF +++ + +L +E L+ T+ +VLG
Sbjct: 126 KAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|332237020|ref|XP_003267698.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 1 [Nomascus
leucogenys]
Length = 527
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 266/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPEFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTMTNTECLCINP 499
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|296483213|tpg|DAA25328.1| TPA: DNA polymerase epsilon subunit 2 [Bos taurus]
Length = 527
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 266/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + + IF++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG +QLDLS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V E + F
Sbjct: 253 AYYGNTNFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LEKLHIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPNIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPFAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCINP 499
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + + IF++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|350579062|ref|XP_003480516.1| PREDICTED: DNA polymerase epsilon subunit 2-like isoform 2 [Sus
scrofa]
Length = 527
Score = 333 bits (853), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 180/445 (40%), Positives = 265/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP+F Y+ + KKF L + K++LFRE
Sbjct: 73 ECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTSHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L VE L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG V LDLS+ +H GLYTE+C VL EG ++DQI HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVPLDLSKAQFHSGLYTESCFVLAEGWFEDQIFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V E + + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LEKLHTMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSTPYGKNQVQALKDSLKTLADIIC-EYPNIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPFAESITNEFRQRVPYSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPGSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ +NP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCLNP 499
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDA 69
++E EC ++ + E IF++I AFDIP+F Y+ + KKF L +
Sbjct: 66 VVEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTSHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L VE L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|2832262|gb|AAC40045.1| DNA polymerase epsilon small subunit [Mus musculus]
Length = 526
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 266/457 (58%), Gaps = 33/457 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++L+ E
Sbjct: 72 ECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLE 131
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +++ + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 132 RYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 191
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ H +A GFPP E S +R
Sbjct: 192 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHANAFGFPPTEPSSTTR 251
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM VI+SDV LD +V E F
Sbjct: 252 AYYGNINFFGGPSNASVKTYTKLRQLEDENKDAMFVIVSDVWLDQVQV----LEKFHVMF 307
Query: 457 QGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L S C ++P S+ V
Sbjct: 308 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIIC-EYPSIHQSSRFVFVPGP 366
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT EF+ VP S TNPCR+QYC+QEI++
Sbjct: 367 EDPGFGSILPR-------------PPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIII 413
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPV+W+ L +YP+
Sbjct: 414 FREDLVNKMCRNCVRFPSSSLDIPTHFVKTILSQGHLAPLPLYVCPVHWAYDYTLRVYPV 473
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PDL+++ D+ + +T+ NTDC+ INP AF+V
Sbjct: 474 PDLLVIADKYDPFTVTNTDCLCINPGSFPRSGFAFKV 510
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 65 VVEAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARD 124
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+ ERY I+ QRT RH LF +++ + +L +E L+ T+ +VLG
Sbjct: 125 KAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLG 184
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 185 MITQLKEG 192
>gi|33468927|ref|NP_035263.1| DNA polymerase epsilon subunit 2 [Mus musculus]
gi|73920202|sp|O54956.2|DPOE2_MOUSE RecName: Full=DNA polymerase epsilon subunit 2; AltName: Full=DNA
polymerase II subunit 2; AltName: Full=DNA polymerase
epsilon subunit B
gi|26346464|dbj|BAC36883.1| unnamed protein product [Mus musculus]
Length = 527
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 266/457 (58%), Gaps = 33/457 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++L+ E
Sbjct: 73 ECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +++ + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ H +A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHANAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM VI+SDV LD +V E F
Sbjct: 253 AYYGNINFFGGPSNASVKTYTKLRQLEDENKDAMFVIVSDVWLDQVQV----LEKFHVMF 308
Query: 457 QGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L S C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIIC-EYPSIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT EF+ VP S TNPCR+QYC+QEI++
Sbjct: 368 EDPGFGSILPR-------------PPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIII 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPV+W+ L +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSSLDIPTHFVKTILSQGHLAPLPLYVCPVHWAYDYTLRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PDL+++ D+ + +T+ NTDC+ INP AF+V
Sbjct: 475 PDLLVIADKYDPFTVTNTDCLCINPGSFPRSGFAFKV 511
Score = 75.9 bits (185), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+ ERY I+ QRT RH LF +++ + +L +E L+ T+ +VLG
Sbjct: 126 KAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|410254140|gb|JAA15037.1| polymerase (DNA directed), epsilon 2 (p59 subunit) [Pan
troglodytes]
Length = 527
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 265/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ +T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGITTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTTTNTECLCINP 499
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ +T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGITTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|114652887|ref|XP_509931.2| PREDICTED: DNA polymerase epsilon subunit 2 isoform 3 [Pan
troglodytes]
Length = 527
Score = 333 bits (853), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 265/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ +T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGITTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTTTNTECLCINP 499
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ +T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGITTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|147907164|ref|NP_001083783.1| DNA-directed DNA polymerase epsilon 2 [Xenopus laevis]
gi|9988418|dbj|BAB12726.1| DNA polymerase epsilon subunit B [Xenopus laevis]
gi|66912072|gb|AAH97773.1| POLE2 protein [Xenopus laevis]
Length = 527
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 185/446 (41%), Positives = 266/446 (59%), Gaps = 35/446 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF---KLVD-KKRKLCADSDAKSKLFRE 282
EC RT + E IF++I AFDIP++ Y+ + KKF K+ L + K++LFRE
Sbjct: 73 ECSRTCDETIEHIFNIIGAFDIPRYVYNSERKKFLPLKMTTLPSPNLFGRARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF +P+ K L VE L+ T + +VLGMI+Q+KE
Sbjct: 133 RYTILQQRTHRHELFTPPVIGSHPDESRSKFQLKTVETLLGNTAKVGEVIVLGMITQMKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+YFLEDPTG VQLDL+ +H GLYTE+C VL EG Y+D++ H++A GFPP E S +R
Sbjct: 193 GKYFLEDPTGAVQLDLTNAQFHSGLYTESCFVLAEGWYEDKVFHINAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDN----DKVRNNLCEFI 452
Y+GN N +GGPS S+K+ ++ ++E+ NE+AM+V LSD+ LD +K+ +
Sbjct: 253 AYYGNMNFFGGPSSTSVKASVKLRQLEEENEDAMLVFLSDLWLDQVEVTEKLHTMFSGYS 312
Query: 453 TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI-KFPEEGDISKHVSKNN 511
T+ F+ ++ P Y I +++ K+ + I ++P S+ V
Sbjct: 313 TAPPTCFIFCGNFSSAP----YGKNHIQSLKDSF--KILADIICEYPNIHKSSRFVFVPG 366
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
E I+P+ P + IT EF+ VP S TNPCR+QYC+QEI+
Sbjct: 367 PEDPGPGFILPR-------------PPIADHITEEFRQRVPFSIFTTNPCRIQYCTQEIV 413
Query: 572 VVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
V RE+L++KMCRNC++FP DI HFV+T++SQG L LP + PVYW+ AL LYP
Sbjct: 414 VFREDLVNKMCRNCVRFPNSSLDIPSHFVKTILSQGHLTPLPPFVSPVYWAYDYALRLYP 473
Query: 631 LPDLVILGDQLNAYTIQNTDCIFINP 656
LPDLV++ D+ + +TI NT+C+ INP
Sbjct: 474 LPDLVVIADKYDPFTITNTECLTINP 499
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF---KLVD-KKRKLCADSDAK 70
+E EC RT + E IF++I AFDIP++ Y+ + KKF K+ L + K
Sbjct: 67 VEAAVQECSRTCDETIEHIFNIIGAFDIPRYVYNSERKKFLPLKMTTLPSPNLFGRARDK 126
Query: 71 SKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY I++QRT RH LF +P+ K L VE L+ T + +VLGM
Sbjct: 127 AELFRERYTILQQRTHRHELFTPPVIGSHPDESRSKFQLKTVETLLGNTAKVGEVIVLGM 186
Query: 125 ISQLKEN 131
I+Q+KE
Sbjct: 187 ITQMKEG 193
>gi|157427892|ref|NP_001098853.1| DNA polymerase epsilon subunit 2 [Bos taurus]
gi|182645379|sp|A7YWS7.1|DPOE2_BOVIN RecName: Full=DNA polymerase epsilon subunit 2; AltName: Full=DNA
polymerase II subunit 2; AltName: Full=DNA polymerase
epsilon subunit B
gi|157279094|gb|AAI34763.1| POLE2 protein [Bos taurus]
Length = 527
Score = 332 bits (852), Expect = 3e-88, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 265/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + + IF++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG +QLDLS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V E + F
Sbjct: 253 AYYGNTNFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LEKLHIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C +P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-GYPNIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPFAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCINP 499
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + + IF++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|39793893|gb|AAH63772.1| Polymerase (DNA directed), epsilon 2 (p59 subunit) [Mus musculus]
Length = 527
Score = 332 bits (852), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 266/457 (58%), Gaps = 33/457 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++L+ E
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +++ + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ H +A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHANAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM VI+SDV LD +V E F
Sbjct: 253 AYYGNINFFGGPSNASVKTYTKLRQLEDENKDAMFVIVSDVWLDQVQV----LEKFHVMF 308
Query: 457 QGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L S C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIIC-EYPSIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT EF+ VP S TNPCR+QYC+QEI++
Sbjct: 368 EDPGFGSILPR-------------PPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIII 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPV+W+ L +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSSLDIPTHFVKTILSQGHLAPLPLYVCPVHWAYDYTLRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PDL+++ D+ + +T+ NTDC+ INP AF+V
Sbjct: 475 PDLLVIADKYDPFTVTNTDCLCINPGSFPRSGFAFKV 511
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+ ERY I+ QRT RH LF +++ + +L +E L+ T+ +VLG
Sbjct: 126 KAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|395504200|ref|XP_003756444.1| PREDICTED: DNA polymerase epsilon subunit 2 [Sarcophilus harrisii]
Length = 525
Score = 332 bits (851), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 178/443 (40%), Positives = 260/443 (58%), Gaps = 27/443 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E I ++I AFD+P F Y+P+ KKF + L + K+++FRE
Sbjct: 73 ECSQSVDETVEHILNIIGAFDVPHFVYNPERKKFLPLSMTSHSSPNLFGKARDKAEVFRE 132
Query: 283 RYNIIRQRTLRHSLFNNINPNA------DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF + A +L +E L+ T + +VLGMI+Q+KE
Sbjct: 133 RYTILWQRTQRHELFTPLATGAHPDESRSKFQLKTIETLLGSTARIGEVIVLGMITQMKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+YFLEDPTG VQL+LS+ +H GLYTE+C VL EG ++DQI HV+A GFPP E S +R
Sbjct: 193 GKYFLEDPTGTVQLNLSKAQFHSGLYTESCFVLAEGWFEDQIFHVNAFGFPPIEPSNTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGP+ S+K+ ++ +E+ NE+ M V++SDV LD +V L + S +
Sbjct: 253 AYYGNVNFFGGPTSTSVKASAKLKHLEEENEDTMFVLVSDVWLDQVEVLEKL-HIMFSGY 311
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P N Y + + + L + DI +
Sbjct: 312 SSVPPTCFIFCGNFSSAPYGKNHVQSLIDSLKAL-----------ADIICDYPNIHQSSR 360
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ G++ K P L + IT++F+ VP S TNPCR+QYC+QEI++ RE
Sbjct: 361 FVFVPGPEDPGPGSILPK---PPLAESITNDFRQRVPYSVFTTNPCRIQYCTQEIIIFRE 417
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+TL+SQG L LPL +CPVYW+ L +YP+PDL
Sbjct: 418 DLVNKMCRNCVRFPSSNMDIPHHFVKTLLSQGHLTPLPLYVCPVYWAYDHTLRVYPIPDL 477
Query: 635 VILGDQLNAYTIQNTDCIFINPV 657
+++ D+ + +TI NTDC+ INPV
Sbjct: 478 LVIADKYDPFTITNTDCLCINPV 500
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E EC ++ + E I ++I AFD+P F Y+P+ KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETVEHILNIIGAFDVPHFVYNPERKKFLPLSMTSHSSPNLFGKARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFNNINPNA------DSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF + A +L +E L+ T + +VLG
Sbjct: 126 KAEVFRERYTILWQRTQRHELFTPLATGAHPDESRSKFQLKTIETLLGSTARIGEVIVLG 185
Query: 124 MISQLKEN 131
MI+Q+KE
Sbjct: 186 MITQMKEG 193
>gi|309747081|ref|NP_001184260.1| DNA polymerase epsilon subunit 2 isoform 3 [Homo sapiens]
gi|133777480|gb|AAI12963.1| POLE2 protein [Homo sapiens]
Length = 502
Score = 332 bits (851), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 180/446 (40%), Positives = 264/446 (59%), Gaps = 33/446 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPV 657
PDL+++ D+ + +T NT+C+ INPV
Sbjct: 475 PDLLVIADKYDPFTTTNTECLCINPV 500
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|301773234|ref|XP_002922048.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Ailuropoda
melanoleuca]
Length = 591
Score = 332 bits (850), Expect = 6e-88, Method: Compositional matrix adjust.
Identities = 180/445 (40%), Positives = 263/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP+F Y + KKF + L + K++LFRE
Sbjct: 137 ECSQSVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 196
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + +L +E L+ T +VLGMI+QLKE
Sbjct: 197 RYTILHQRTHRHELFTPPVVGSHPDETGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 256
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 257 GKFFLEDPTGTVQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 316
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD +V L + F
Sbjct: 317 AYYGNVNFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQGEVLGKL----HTMF 372
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P S+ V
Sbjct: 373 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPSIHQSSRFVFVPGP 431
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + ITSEF+ VP S TNPCR+QYC+QEI+V
Sbjct: 432 EDPGFGSILPR-------------PPLGESITSEFRQRVPFSVFTTNPCRIQYCTQEIIV 478
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++ P D+ HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 479 FREDLVNKMCRNCVRSPTSNLDLPTHFVKTILSQGHLSPLPLYVCPVYWAYDYALRVYPV 538
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T NT+C+ INP
Sbjct: 539 PDLLVIADKYDPFTSTNTECLCINP 563
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E IF++I AFDIP+F Y + KKF + L +
Sbjct: 130 VVEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARD 189
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + +L +E L+ T +VLG
Sbjct: 190 KAELFRERYTILHQRTHRHELFTPPVVGSHPDETGSKFQLKTIETLLGSTTKIGDVIVLG 249
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 250 MITQLKEG 257
>gi|327286643|ref|XP_003228039.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Anolis
carolinensis]
Length = 527
Score = 331 bits (849), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 177/442 (40%), Positives = 263/442 (59%), Gaps = 27/442 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRK----LCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP++ Y+ + KKF + L + K+++FRE
Sbjct: 73 ECSQSVDETMEHIFNIIGAFDIPRYIYNSERKKFLPLSMTNHPPPCLLGSARDKAEVFRE 132
Query: 283 RYNIIRQRTLRHSLFNNINPNA------DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF A +L +E L+ ++ + +VLGMI+QLKE
Sbjct: 133 RYIILQQRTHRHELFTPSAIGALPEEGRSKFQLKTIETLLGSSSRVGEVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG+VQLD+S+ +H GLYTE+C VL EG Y+D++ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGVVQLDISKAQFHSGLYTESCFVLTEGWYEDEVFHVNAFGFPPTEPSATTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ NE+ M V LSDV LD +V L + S +
Sbjct: 253 AYYGNANFFGGPSSTSVKASAKLKQLEEENEDTMFVFLSDVWLDQVEVLEKL-RLMFSGY 311
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P N Y ++ +++ L + C +FP + S+ V E
Sbjct: 312 SAVPPTCFFFCGNFSSAPYVKNQVQSLKDSLKALADIIC-EFPSIHESSRFVFVPGSEDP 370
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
I+P+ P L + IT EF+ VP S +TNPCRVQYC+QEI++ RE
Sbjct: 371 GPGSILPR-------------PPLTESITQEFREQVPGSVFSTNPCRVQYCTQEIIIFRE 417
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+T++SQG L LPL++ PV+W+ L YPLPD+
Sbjct: 418 DLVNKMCRNCVRFPSNNLDIPNHFVKTVLSQGHLSPLPLSVSPVFWAYDYTLRTYPLPDV 477
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
++ D+ + +T+ NTDC+ INP
Sbjct: 478 IVFADKYDPFTVTNTDCLCINP 499
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRK----LCADSDA 69
++E EC ++ + E IF++I AFDIP++ Y+ + KKF + L +
Sbjct: 66 MVEAAVLECSQSVDETMEHIFNIIGAFDIPRYIYNSERKKFLPLSMTNHPPPCLLGSARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFNNINPNA------DSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I++QRT RH LF A +L +E L+ ++ + +VLG
Sbjct: 126 KAEVFRERYIILQQRTHRHELFTPSAIGALPEEGRSKFQLKTIETLLGSSSRVGEVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|397523550|ref|XP_003831792.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 1 [Pan
paniscus]
gi|426376832|ref|XP_004055186.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 1 [Gorilla
gorilla gorilla]
Length = 527
Score = 331 bits (848), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 264/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTTTNTECLCINP 499
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|348572137|ref|XP_003471850.1| PREDICTED: DNA polymerase epsilon subunit 2-like isoform 1 [Cavia
porcellus]
Length = 527
Score = 331 bits (848), Expect = 9e-88, Method: Compositional matrix adjust.
Identities = 181/445 (40%), Positives = 260/445 (58%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC R+ + E IF++I AFD+P+F Y KKF + + L + K++L+RE
Sbjct: 73 ECSRSAEETIEHIFNIIGAFDVPRFVYHSGRKKFLPLLMTNHPEPNLFGTARDKAELYRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +P+A K L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVVGSHPDAMGSKFQLKTIESLLGSTTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGP S+K+ ++ ++E N++AM V +SDV LD +V E + + F
Sbjct: 253 AYYGNINFFGGPFNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LEKLHTMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C + P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EHPNIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPYSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC+ FP DI HF +T++SQG L LPL +CPVYW+ L +YP+
Sbjct: 415 FREDLVNKMCRNCVHFPSSNLDIPNHFAKTVISQGHLTPLPLYVCPVYWAYDYTLRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NTDC+ INP
Sbjct: 475 PDLLVIADKYDPFTVTNTDCLCINP 499
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAK 70
+E EC R+ + E IF++I AFD+P+F Y KKF + + L + K
Sbjct: 67 VETAVQECSRSAEETIEHIFNIIGAFDVPRFVYHSGRKKFLPLLMTNHPEPNLFGTARDK 126
Query: 71 SKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGM 124
++L+RERY I+ QRT RH LF +P+A K L +E L+ T +VLGM
Sbjct: 127 AELYRERYTILHQRTHRHELFTPPVVGSHPDAMGSKFQLKTIESLLGSTTKIGDVIVLGM 186
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 187 ITQLKEG 193
>gi|344273567|ref|XP_003408592.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Loxodonta
africana]
Length = 502
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 181/446 (40%), Positives = 262/446 (58%), Gaps = 33/446 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDAKSKLFRE 282
EC + + + IF++I AFD P+F Y+ + KKF L + K++LFRE
Sbjct: 73 ECSQAVDETIDHIFNIIGAFDTPRFVYNSERKKFLPLLMTSHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +PN K L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGCHPNESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHNGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N+++M V +SDV LD +V E + + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEDENKDSMFVFISDVWLDQVEV----LEKLHTMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L S C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQSLKDSLKSLADIIC-EYPNIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HF++T++SQG L LPL +CPVYW+ L +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFIKTILSQGHLTPLPLYVCPVYWAYDYTLRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPV 657
PDL+++ D+ + +T+ NT+C+ INPV
Sbjct: 475 PDLLVIADKYDPFTMTNTECLCINPV 500
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDA 69
++E EC + + + IF++I AFD P+F Y+ + KKF L +
Sbjct: 66 VVEAAVQECSQAVDETIDHIFNIIGAFDTPRFVYNSERKKFLPLLMTSHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF +PN K L +E L+ T +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGCHPNESGSKFQLKTIETLLGSTTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|281182710|ref|NP_001162579.1| polymerase (DNA directed), epsilon 2 [Rattus norvegicus]
Length = 527
Score = 331 bits (848), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 266/457 (58%), Gaps = 33/457 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP F Y+ + KKF + + + K++L+RE
Sbjct: 73 ECSQSVDETIEHIFNIIGAFDIPHFIYNSERKKFLPLSMTNHAAPTIFGTARDKAELYRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ H +A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGCFEDQVFHANAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM VI+SDV LD +V L F
Sbjct: 253 AYYGNINFFGGPSNASVKASAKLRQLEEENKDAMFVIVSDVWLDQVQVLEKLHVM----F 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L S C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIIC-EYPSIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT EF+ VP S TNPCR+QYC+QEI++
Sbjct: 368 EDPGFGSILPR-------------PPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIII 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ L +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSSLDIPTHFVKTVLSQGHLAPLPLYVSPVYWAYDYTLRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PDL+++ D+ + +T+ NT+C+ INP AF+V
Sbjct: 475 PDLLVIADKYDPFTVTNTECLCINPGSFPRSGFAFKV 511
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E EC ++ + E IF++I AFDIP F Y+ + KKF + + +
Sbjct: 66 VVEAAVQECSQSVDETIEHIFNIIGAFDIPHFIYNSERKKFLPLSMTNHAAPTIFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+RERY I+ QRT RH LF ++ + + +L +E L+ T+ +VLG
Sbjct: 126 KAELYRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKVGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|334310659|ref|XP_001378853.2| PREDICTED: DNA polymerase epsilon subunit 2 [Monodelphis domestica]
Length = 530
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 177/442 (40%), Positives = 262/442 (59%), Gaps = 27/442 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDAKSKLFRE 282
EC ++ + E I ++I AFDIP F Y+ + KKF + L + K+++FRE
Sbjct: 73 ECSQSVDETVEHILNIIGAFDIPHFVYNLERKKFLPLSMISHPSPNLFGKARDKAEVFRE 132
Query: 283 RYNIIRQRTLRHSLFNNINPNA------DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF + A +L +E L+ T + +VLGMI+Q+KE
Sbjct: 133 RYTILQQRTQRHELFTPLATGAHPDESRSKFQLKTIETLLGSTAKIGEVIVLGMITQMKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+YFLEDPTG VQL+LS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 WKYFLEDPTGTVQLNLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPIEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGP+ S+KS ++ ++E+ NE+ M V++SDV LD +V L + S +
Sbjct: 253 AYYGNVNFFGGPTSTSVKSSAKLKQLEEENEDTMFVLVSDVWLDQVEVLEKL-HIMFSGY 311
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P N Y + +++ L + DI +
Sbjct: 312 SAVPPTCFIFCGNFSSAPYGKNHVQSLKDSLKAL-----------ADIICEYPNIHQSSR 360
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ G++ + P L + IT++F+ VP S +TNPCR+QYC+QEI++ RE
Sbjct: 361 FVFVPGPEDPGPGSILPR---PPLAESITNDFRQRVPFSVFSTNPCRIQYCTQEIIIFRE 417
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+TL+SQG L LPL +CPVYW+ L +YP+PDL
Sbjct: 418 DLVNKMCRNCVRFPSSNLDIPHHFVKTLLSQGHLTPLPLYVCPVYWAYDHTLRVYPVPDL 477
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
+I+ D+ + +TI NTDC+ INP
Sbjct: 478 LIIADKYDPFTITNTDCLCINP 499
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 44/127 (34%), Positives = 69/127 (54%), Gaps = 10/127 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDA 69
++E +EC ++ + E I ++I AFDIP F Y+ + KKF + L +
Sbjct: 66 VVEAAVHECSQSVDETVEHILNIIGAFDIPHFVYNLERKKFLPLSMISHPSPNLFGKARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFNNINPNA------DSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I++QRT RH LF + A +L +E L+ T + +VLG
Sbjct: 126 KAEVFRERYTILQQRTQRHELFTPLATGAHPDESRSKFQLKTIETLLGSTAKIGEVIVLG 185
Query: 124 MISQLKE 130
MI+Q+KE
Sbjct: 186 MITQMKE 192
>gi|32189369|ref|NP_002683.2| DNA polymerase epsilon subunit 2 isoform 1 [Homo sapiens]
gi|3915676|sp|P56282.2|DPOE2_HUMAN RecName: Full=DNA polymerase epsilon subunit 2; AltName: Full=DNA
polymerase II subunit 2; AltName: Full=DNA polymerase
epsilon subunit B
gi|14701864|gb|AAK72254.1|AF387034_1 DNA polymerase epsilon subunit B [Homo sapiens]
gi|2832260|gb|AAC39610.1| DNA polymerase epsilon small subunit [Homo sapiens]
gi|116496653|gb|AAI26221.1| Polymerase (DNA directed), epsilon 2 (p59 subunit) [Homo sapiens]
gi|116497139|gb|AAI26219.1| Polymerase (DNA directed), epsilon 2 (p59 subunit) [Homo sapiens]
gi|133923373|gb|ABO43040.1| polymerase (DNA directed), epsilon 2 (p59 subunit) [Homo sapiens]
gi|307686307|dbj|BAJ21084.1| polymerase (DNA directed), epsilon 2 [synthetic construct]
gi|313883442|gb|ADR83207.1| polymerase (DNA directed), epsilon 2 (p59 subunit) [synthetic
construct]
Length = 527
Score = 330 bits (847), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 263/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTTTNTECLCINP 499
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|2697123|gb|AAC51920.1| DNA polymerase epsilon subunit B [Homo sapiens]
Length = 526
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 181/445 (40%), Positives = 266/445 (59%), Gaps = 34/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C E DI H S+
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC----EYPDI--HQSR--- 359
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+F+ P+ G++ + P L + IT+EF+ VP S TNPCR+QYC+QEI V
Sbjct: 360 ---FVFVPGPEDPGFGSILPR---PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITV 413
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 414 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 473
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T NT+C+ INP
Sbjct: 474 PDLLVIADKYDPFTTTNTECLCINP 498
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|354503955|ref|XP_003514045.1| PREDICTED: DNA polymerase epsilon subunit 2 [Cricetulus griseus]
Length = 569
Score = 330 bits (846), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 264/457 (57%), Gaps = 33/457 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP F Y+ + KKF + L + K++L+RE
Sbjct: 115 ECSQSVDETIEHIFNIIGAFDIPHFVYNSERKKFLPLSMTNHAAPTLFGTARDKAELYRE 174
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + +L +E L+ T +VLGMI+QLKE
Sbjct: 175 RYTILHQRTHRHELFTPPVIGSHPEESGSKFQLKTIETLLGSTAKVGDVIVLGMITQLKE 234
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 235 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 294
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V L F
Sbjct: 295 AYYGNINFFGGPSNASVKTSAKLRQLEDENKDAMFVFVSDVWLDQVQVLEKLHIM----F 350
Query: 457 QGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L S C ++P S+ V
Sbjct: 351 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIIC-EYPSIHQSSRFVFVPGP 409
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT EF+ +P S TNPCR+QYC+QEI++
Sbjct: 410 EDPGFGSILPR-------------PPLAESITQEFRQRIPFSVFTTNPCRIQYCTQEIII 456
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPV+W+ L +YP+
Sbjct: 457 FREDLVNKMCRNCVRFPSSNLDIPTHFVKTVLSQGHLTPLPLYVCPVHWTYDYTLRVYPV 516
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PDL+++ D+ + +T+ NT+C+ INP AF+V
Sbjct: 517 PDLLVIADKYDPFTVTNTECLCINPGSFPRSGFAFKV 553
Score = 77.4 bits (189), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E EC ++ + E IF++I AFDIP F Y+ + KKF + L +
Sbjct: 108 VVEAAVQECSQSVDETIEHIFNIIGAFDIPHFVYNSERKKFLPLSMTNHAAPTLFGTARD 167
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+RERY I+ QRT RH LF ++ + +L +E L+ T +VLG
Sbjct: 168 KAELYRERYTILHQRTHRHELFTPPVIGSHPEESGSKFQLKTIETLLGSTAKVGDVIVLG 227
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 228 MITQLKEG 235
>gi|71895937|ref|NP_001025641.1| DNA-directed DNA polymerase epsilon 2 [Xenopus (Silurana)
tropicalis]
gi|60688343|gb|AAH91608.1| MGC97727 protein [Xenopus (Silurana) tropicalis]
Length = 527
Score = 330 bits (845), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 185/446 (41%), Positives = 269/446 (60%), Gaps = 35/446 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF---KLVD-KKRKLCADSDAKSKLFRE 282
EC R+ + E IF++I AFDIP++ Y+ + KKF K+ L + K++LFRE
Sbjct: 73 ECSRSCDETIEHIFNIIGAFDIPRYVYNSERKKFLPLKMTTLPSPNLFGSARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF +P+ K L VE L+ T + +VLGMI+QLKE
Sbjct: 133 RYTILQQRTHRHELFTPPVIGAHPDESRSKFQLKTVETLLGNTAKVGEVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+ FLEDPTG VQLDL+ +H GLYTE+C VL EG Y+D+I H++A GFPP E S +R
Sbjct: 193 GKIFLEDPTGAVQLDLTNAQFHSGLYTESCFVLAEGWYEDKIFHINAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLD----NDKVRNNLCEFI 452
Y+GN N +GGPS S+K+ ++ ++E+ NE+AM V LSD+ LD +K+ +
Sbjct: 253 AYYGNMNFFGGPSSTSVKTSVKLRQLEEENEDAMFVFLSDLWLDQVEVTEKLHTMFSGYS 312
Query: 453 TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI-KFPEEGDISKHVSKNN 511
T+ F+ ++ P Y I +++ K+ + I ++P H+ K++
Sbjct: 313 TAPPTCFIFCGNFSSAP----YGKNHIRSLKDSF--KILADIICEYP-------HIHKSS 359
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
+F+ P+ G + + P + IT EF+ VP S TNPCR+QYC+QEI+
Sbjct: 360 ---RFVFVPGPEDPGPGFILPR---PPIADHITEEFRQRVPFSIFTTNPCRIQYCTQEIV 413
Query: 572 VVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
V RE+L++KMCRNC++FP DI HFV+T++SQG L LP + PVYW+ AL LYP
Sbjct: 414 VFREDLVNKMCRNCVRFPNNTLDIPNHFVKTILSQGLLTPLPPFVSPVYWAYDYALRLYP 473
Query: 631 LPDLVILGDQLNAYTIQNTDCIFINP 656
LPDLV++ D+ + +TI NT+C+ INP
Sbjct: 474 LPDLVVIADKYDPFTITNTECLTINP 499
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 50/127 (39%), Positives = 71/127 (55%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF---KLVD-KKRKLCADSDAK 70
+E EC R+ + E IF++I AFDIP++ Y+ + KKF K+ L + K
Sbjct: 67 VETAVQECSRSCDETIEHIFNIIGAFDIPRYVYNSERKKFLPLKMTTLPSPNLFGSARDK 126
Query: 71 SKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY I++QRT RH LF +P+ K L VE L+ T + +VLGM
Sbjct: 127 AELFRERYTILQQRTHRHELFTPPVIGAHPDESRSKFQLKTVETLLGNTAKVGEVIVLGM 186
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 187 ITQLKEG 193
>gi|73962858|ref|XP_851216.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 1 [Canis lupus
familiaris]
Length = 527
Score = 329 bits (844), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 262/445 (58%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC + + E IF++I AFDIP+F Y + KKF + L + K++LF E
Sbjct: 73 ECSQLVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARDKAELFLE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDETGSKFQLKTIETLLGSTAKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE+C VL EG ++D++ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTESCFVLAEGWFEDRVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD +V L + F
Sbjct: 253 AYYGNVNFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQGEVLRKL----HTMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P M N Y +I +++ L + C ++P S+ V
Sbjct: 309 SGYSPAPPTCFIMCGNFSSAPYGKSQIQALKDSLKTLADIIC-EYPNIHQSSRFVFIPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P + + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPIAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCINP 499
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 66/128 (51%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC + + E IF++I AFDIP+F Y + KKF + L +
Sbjct: 66 VVEAAVQECSQLVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LF ERY I+ QRT RH LF ++ + +L +E L+ T +VLG
Sbjct: 126 KAELFLERYTILHQRTHRHELFTPPVIGSHPDETGSKFQLKTIETLLGSTAKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|432936708|ref|XP_004082240.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Oryzias latipes]
Length = 528
Score = 329 bits (843), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 178/442 (40%), Positives = 264/442 (59%), Gaps = 27/442 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
+C ++ + + IF++I AFD+P++ Y + KKF ++ LC + K++LFRE
Sbjct: 74 DCTQSCDETIDNIFNIIGAFDVPRYIYSVERKKFLPINMTGHPAPSLCGSAKDKAELFRE 133
Query: 283 RYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF + + +L +E L+ T+ + +VLGMI+QLKE
Sbjct: 134 RYTILQQRTHRHELFTPPAIGAAVEEGQNKFQLKTIEALLGSTSKLGEVIVLGMITQLKE 193
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+++LEDP+G VQLDLS+ +H GLYTE+C VL EG Y+D +LHV+ GFPP E S +R
Sbjct: 194 GKFYLEDPSGTVQLDLSKAQFHNGLYTESCFVLAEGWYEDSVLHVNGFGFPPTEPSSATR 253
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ +++ ++E+ NE+AM VI+SDV LD+ +V L + S +
Sbjct: 254 SYYGNINFFGGPSSTSVKASSKLKQLEEENEDAMFVIVSDVWLDSVEVMEKL-NIMFSGY 312
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P + N Y + ++E L + C +P S+ V E
Sbjct: 313 AAMPPTCFILCGNFSSAPYGKTQNRSLKESLKALADMICT-YPSIHSSSRFVFVPGPEDP 371
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
I+P+ P L + IT EF VP S TNPCR+QYCSQEILV+RE
Sbjct: 372 GPANILPR-------------PPLVQNITEEFSERVPFSVFTTNPCRIQYCSQEILVIRE 418
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNCI+ P DI HFV+T++SQG L LPL + PV+W+ +L +YP+PD+
Sbjct: 419 DLVNKMCRNCIRLPNSNLDIPNHFVKTILSQGHLTPLPLYVSPVFWAYDYSLRVYPVPDV 478
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
V+ D+ + +TI NTDC+ +NP
Sbjct: 479 VVFADKYDPFTITNTDCLSVNP 500
Score = 79.7 bits (195), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E +C ++ + + IF++I AFD+P++ Y + KKF ++ LC +
Sbjct: 67 VVESAVQDCTQSCDETIDNIFNIIGAFDVPRYIYSVERKKFLPINMTGHPAPSLCGSAKD 126
Query: 70 KSKLFRERYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I++QRT RH LF + + +L +E L+ T+ + +VLG
Sbjct: 127 KAELFRERYTILQQRTHRHELFTPPAIGAAVEEGQNKFQLKTIEALLGSTSKLGEVIVLG 186
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 187 MITQLKEG 194
>gi|348544243|ref|XP_003459591.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Oreochromis
niloticus]
Length = 528
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 175/442 (39%), Positives = 263/442 (59%), Gaps = 27/442 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
+C +T + + +F++I AFD+P++ Y + KKF + LC + K++LFRE
Sbjct: 74 DCTQTCDETIDNVFNIIGAFDVPRYIYSVERKKFVPISMTSHPAPSLCGLARVKAELFRE 133
Query: 283 RYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF + + +L VE L+ T + +VLGMI+QLKE
Sbjct: 134 RYTILQQRTHRHELFTPPAIGAAVEEGQNKFQLKTVEALLGSTAKLGEVIVLGMITQLKE 193
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+++LEDP+G +QLDLS+ +H GLYTE+C VL EG Y+D + HV+ GFPP E S +R
Sbjct: 194 GKFYLEDPSGTIQLDLSKAQFHNGLYTESCFVLAEGWYEDSVFHVNGFGFPPTEPSSATR 253
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K ++ ++E+ NE+AM VI+SDV LD+ +V L + S +
Sbjct: 254 AYYGNINFFGGPSTTSVKMSAKLKQLEEENEDAMFVIVSDVWLDSVEVMEKL-NIMFSGY 312
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P N Y ++ ++E L + C +P S H S
Sbjct: 313 AAMPPTCFIFCGNFSSAPYGKTQLKSLKESLKALADAIC-SYP-----SIHSSSR----- 361
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ GT+ + P L IT EF+ VP S TNPCR+QYCSQEI+++RE
Sbjct: 362 FVFVPGPEDPGPGTILPR---PPLADHITEEFRQRVPFSVFTTNPCRIQYCSQEIIIIRE 418
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++ P DI HFVRT++SQG L LPL + PV+W+ +L +YP+PD+
Sbjct: 419 DLVNKMCRNCVRLPNNNLDIPNHFVRTILSQGHLTPLPLYVSPVFWAYDFSLRVYPVPDV 478
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
++ D+ + ++I NTDC+ +NP
Sbjct: 479 IVFADKYDPFSITNTDCLCVNP 500
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDA 69
++E +C +T + + +F++I AFD+P++ Y + KKF + LC +
Sbjct: 67 VVESAVQDCTQTCDETIDNVFNIIGAFDVPRYIYSVERKKFVPISMTSHPAPSLCGLARV 126
Query: 70 KSKLFRERYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I++QRT RH LF + + +L VE L+ T + +VLG
Sbjct: 127 KAELFRERYTILQQRTHRHELFTPPAIGAAVEEGQNKFQLKTVEALLGSTAKLGEVIVLG 186
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 187 MITQLKEG 194
>gi|189230162|ref|NP_001121405.1| uncharacterized protein LOC100158493 [Xenopus (Silurana)
tropicalis]
gi|158254287|gb|AAI54198.1| Polymerase (DNA directed), epsilon 2 [Danio rerio]
gi|183985608|gb|AAI66105.1| LOC100158493 protein [Xenopus (Silurana) tropicalis]
Length = 527
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 174/441 (39%), Positives = 261/441 (59%), Gaps = 25/441 (5%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
+C ++ + + +F++I AFD+P+F + + KKF + KLC + K++LFRE
Sbjct: 73 DCSQSCDETIDHVFNIIGAFDVPRFIFSTERKKFVPISMANHPLPKLCGQARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF + + + +L VE L+ + + +VLGMI+QL+E
Sbjct: 133 RYTILQQRTHRHELFTPPVIGSAQDEGRNKFQLKTVEALLGSSARLGEVIVLGMITQLRE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+++LEDP+G VQLD+S+ +H GLYTE+C VL EG Y+D + HV A GFPP E S +R
Sbjct: 193 GKFYLEDPSGTVQLDISKAQFHSGLYTESCFVLAEGWYEDSVFHVSAFGFPPTEPSSFTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
YFGN N +GGPS ++K+ ++ ++E+ NE+AM V++SDV LD+ +V E I + F
Sbjct: 253 AYFGNVNFFGGPSSTAVKASAKLKQLEEENEDAMFVLVSDVWLDSVEV----LEKIHTMF 308
Query: 457 QGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
G+ A P +C + R+ K D+ +
Sbjct: 309 SGY-----SALPPTCFIFCGSFSSAPYGRTQLRSLRDSFK--ALADLICEFPSIHSSSRF 361
Query: 517 IFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
+F+ P+ G V + P L + IT EFQ VP S TNPCR+QYCSQE++++RE+
Sbjct: 362 VFVPGPEDPGPGAVLPR---PPLAEHITEEFQQRVPLSVFTTNPCRIQYCSQELVIIRED 418
Query: 577 LLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
L++KMCRNC + P DI HFV+T++SQG L LPL +CPV+W+ L LYP+PDL+
Sbjct: 419 LVNKMCRNCERLPSSSLDIPTHFVKTVLSQGHLTPLPLYVCPVFWAYDHTLRLYPVPDLI 478
Query: 636 ILGDQLNAYTIQNTDCIFINP 656
+ D+ + + I NTDC+ INP
Sbjct: 479 VFADKYDPFNICNTDCLCINP 499
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDA 69
++E +C ++ + + +F++I AFD+P+F + + KKF + KLC +
Sbjct: 66 VLEAAVQDCSQSCDETIDHVFNIIGAFDVPRFIFSTERKKFVPISMANHPLPKLCGQARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I++QRT RH LF + + + +L VE L+ + + +VLG
Sbjct: 126 KAELFRERYTILQQRTHRHELFTPPVIGSAQDEGRNKFQLKTVEALLGSSARLGEVIVLG 185
Query: 124 MISQLKEN 131
MI+QL+E
Sbjct: 186 MITQLREG 193
>gi|405952640|gb|EKC20427.1| DNA polymerase epsilon subunit 2 [Crassostrea gigas]
Length = 505
Score = 328 bits (842), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 182/455 (40%), Positives = 261/455 (57%), Gaps = 30/455 (6%)
Query: 223 KLSSECCRTEINSEEQ----IFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSD 274
K++ E E N+E++ +F VI AF +P++ Y D KKF L L +
Sbjct: 46 KVACEAAVQECNAEQEEGDNVFCVIDAFSVPRYTYSADRKKFIQNSTLGLPPPCLHGTAQ 105
Query: 275 AKSKLFRERYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVL 328
K LF +RY I++QRT RH LF + +A +L +EYL+ T + +VL
Sbjct: 106 DKVTLFLDRYTILQQRTQRHDLFTPPVIGAEKDESAKKFQLKPIEYLLGSTARLGEIIVL 165
Query: 329 GMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPP 388
GM++QLKE ++++EDPTG VQ+DLS ++H GL+TENC VL EG Y+D++ HV+A GFPP
Sbjct: 166 GMLTQLKEGKWYVEDPTGAVQVDLSDANFHTGLFTENCFVLAEGWYEDEVFHVNAFGFPP 225
Query: 389 PEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNL 448
PE +K +R YFGN N +GG S + K+ ++ ++E+ N +AM V LSDV LD KV L
Sbjct: 226 PEPAKVTRAYFGNINFFGGLSSICAKASVKLKQVEQENRDAMFVFLSDVWLDQVKVIEKL 285
Query: 449 CEFITSEFQGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHV 507
T + F P + N S V+RE S + ++FP + S+
Sbjct: 286 RVLFTG-YSDFPPTCFILCGNFISAPQESHRAKVLRESFHS-LIDLILEFPNIAENSR-- 341
Query: 508 SKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS 567
F+ VP G T + P +P IT E + +PNST +NPCR+QYC+
Sbjct: 342 ----------FIFVPGSQDPGPSTI-LPRPPIPNSITEEVRRKLPNSTFTSNPCRIQYCT 390
Query: 568 QEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALS 627
QEI+V RE++++KMCRNC+KFP + D+ HF +TL+SQG L LPL++CPVYW L
Sbjct: 391 QEIVVFREDIVTKMCRNCVKFPADNDVPTHFAKTLISQGHLCPLPLHVCPVYWPYDNGLR 450
Query: 628 LYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTV 662
LYPLPDLV+ D+ + + DC +NP+ V
Sbjct: 451 LYPLPDLVVCADKFDPFHTTAADCTVMNPMASRVV 485
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 42/119 (35%), Positives = 60/119 (50%), Gaps = 10/119 (8%)
Query: 23 CRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDAKSKLFRERY 78
C E + +F VI AF +P++ Y D KKF L L + K LF +RY
Sbjct: 56 CNAEQEEGDNVFCVIDAFSVPRYTYSADRKKFIQNSTLGLPPPCLHGTAQDKVTLFLDRY 115
Query: 79 NIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
I++QRT RH LF + +A +L +EYL+ T + +VLGM++QLKE
Sbjct: 116 TILQQRTQRHDLFTPPVIGAEKDESAKKFQLKPIEYLLGSTARLGEIIVLGMLTQLKEG 174
>gi|149410475|ref|XP_001515002.1| PREDICTED: DNA polymerase epsilon subunit 2 [Ornithorhynchus
anatinus]
Length = 535
Score = 327 bits (838), Expect = 1e-86, Method: Compositional matrix adjust.
Identities = 178/442 (40%), Positives = 261/442 (59%), Gaps = 27/442 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
EC ++ + E IF++I A+DIP+F Y + KKF + L + K++LFRE
Sbjct: 81 ECSQSVDEAIEHIFNIIGAYDIPRFVYSSERKKFLPLSMTNHPSPNLFGTARDKAELFRE 140
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF +P+ K L +E L+ T + +VLGMI+QLKE
Sbjct: 141 RYTILQQRTHRHELFTPPVIGAHPDESRSKFQLKTIETLLGSTAKIGELIVLGMITQLKE 200
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYT++C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 201 GKFFLEDPTGAVQLDLSKAQFHSGLYTDSCYVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 260
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E NE+AM V LSDV LD +V L + S +
Sbjct: 261 AYYGNTNFFGGPSSTSVKTSAKLKQLEDENEDAMFVFLSDVWLDQVEVLEKL-HTMFSGY 319
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P N Y ++ +++ L + C ++P S+ V E
Sbjct: 320 SSLPPTCFIFCGNFSSAPYGKNQVQALKDSLKALADIIC-EYPSIHKSSRFVFVPGPEDP 378
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
I+P+ P L + I +EF+ VP S TNPCR+QYC+QEI+V RE
Sbjct: 379 GPGFILPR-------------PPLAENIINEFKQRVPFSVFTTNPCRIQYCTQEIIVFRE 425
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ + +YP+PDL
Sbjct: 426 DLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYTMRVYPVPDL 485
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
+++ D+ + +T+ NT+C+ INP
Sbjct: 486 LVIADKYDPFTVTNTECLCINP 507
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDA 69
++E EC ++ + E IF++I A+DIP+F Y + KKF + L +
Sbjct: 74 VVEIAVQECSQSVDEAIEHIFNIIGAYDIPRFVYSSERKKFLPLSMTNHPSPNLFGTARD 133
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I++QRT RH LF +P+ K L +E L+ T + +VLG
Sbjct: 134 KAELFRERYTILQQRTHRHELFTPPVIGAHPDESRSKFQLKTIETLLGSTAKIGELIVLG 193
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 194 MITQLKEG 201
>gi|27545241|ref|NP_775353.1| DNA polymerase epsilon subunit 2 [Danio rerio]
gi|21105458|gb|AAM34672.1|AF506228_1 DNA polymerase epsilon subunit B [Danio rerio]
Length = 527
Score = 326 bits (836), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 173/441 (39%), Positives = 261/441 (59%), Gaps = 25/441 (5%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
+C ++ + + +F++I AFD+P+F + + KKF + KLC + K++LFRE
Sbjct: 73 DCSQSCDETIDHVFNIIGAFDVPRFIFSTERKKFVPISMTNHPLPKLCGQARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF + + + +L VE L+ + + +VLGMI+QL+E
Sbjct: 133 RYTILQQRTHRHELFTPPVIGSAQDEGRNKFQLKTVEALLCSSARLGEVIVLGMITQLRE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+++LEDP+G VQLD+S+ +H GLYTE+C VL EG Y+D + HV A GFPP E S +R
Sbjct: 193 GKFYLEDPSGTVQLDISKAQFHSGLYTESCFVLAEGWYEDSVFHVSAFGFPPTEPSSFTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
YFGN N +GGPS ++K+ ++ ++E+ NE+AM V++SDV LD+ +V E I + F
Sbjct: 253 AYFGNVNFFGGPSSTAVKASAKLKQLEEENEDAMFVLVSDVWLDSVEV----LEKIHTMF 308
Query: 457 QGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
G+ A P +C + R+ K D+ +
Sbjct: 309 SGY-----SALPPTCFIFCGSFSSAPYGRTQLRSLRDSFK--ALADLICEFPSIHSSSRF 361
Query: 517 IFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
+F+ P+ G V + P L + IT EFQ VP S TNPCR+QYCSQE++++RE+
Sbjct: 362 VFVPGPEDPGPGAVLPR---PPLAEHITEEFQQRVPLSVFTTNPCRIQYCSQELVIIRED 418
Query: 577 LLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
L++KMCRNC + P DI HFV+T++SQG L LPL +CPV+W+ L LYP+PD++
Sbjct: 419 LVNKMCRNCERLPSSSLDIPTHFVKTVLSQGHLTPLPLYVCPVFWAYDHTLRLYPVPDVI 478
Query: 636 ILGDQLNAYTIQNTDCIFINP 656
+ D+ + + I NTDC+ INP
Sbjct: 479 VFADKYDPFNICNTDCLCINP 499
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 42/128 (32%), Positives = 72/128 (56%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDA 69
++E +C ++ + + +F++I AFD+P+F + + KKF + KLC +
Sbjct: 66 VLEAAVQDCSQSCDETIDHVFNIIGAFDVPRFIFSTERKKFVPISMTNHPLPKLCGQARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I++QRT RH LF + + + +L VE L+ + + +VLG
Sbjct: 126 KAELFRERYTILQQRTHRHELFTPPVIGSAQDEGRNKFQLKTVEALLCSSARLGEVIVLG 185
Query: 124 MISQLKEN 131
MI+QL+E
Sbjct: 186 MITQLREG 193
>gi|156381328|ref|XP_001632217.1| predicted protein [Nematostella vectensis]
gi|156219270|gb|EDO40154.1| predicted protein [Nematostella vectensis]
Length = 523
Score = 326 bits (835), Expect = 3e-86, Method: Compositional matrix adjust.
Identities = 167/439 (38%), Positives = 257/439 (58%), Gaps = 23/439 (5%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
EC R ++ F +I AFD+P F ++ + KKF V + L +++ KS+L++ERY +
Sbjct: 72 ECSRDPSEDSDKAFCIIDAFDVPTFAFNSERKKFFPVSGRSALHPNAEVKSELYKERYTV 131
Query: 287 IRQRTLRHSLFNNI--------NPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENR 338
I+QRT+RH LF+N+ N +D L VEYL+ T +VLGM++Q+KE +
Sbjct: 132 IQQRTIRHELFSNVGDLEAVKQNQTSDKFDLKTVEYLLGSTGSLGNVIVLGMLTQIKEGK 191
Query: 339 YFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLY 398
++LEDPTG V+LD+++ +H GLYTENC VL EG+Y D+I HV A+GFPP E SK +R
Sbjct: 192 FYLEDPTGAVELDITEVKFHTGLYTENCFVLAEGNYDDEIFHVTAIGFPPAEPSKVTRAQ 251
Query: 399 FGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG 458
FGN N +GGPS K+ +++ +ME+ N++AM VI+SDVHLD +V L +T +
Sbjct: 252 FGNINFFGGPSTSCAKASSKLKEMERENKDAMFVIMSDVHLDQPRVMEKLRTLLTG-YST 310
Query: 459 FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
P+ + Q + + +E L +FP + S+ +F
Sbjct: 311 MPPSLFILCGNFNSQPYGPDQYKILKESLQVFASMVAEFPSLVEQSR----------FLF 360
Query: 519 LIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 578
+ P+ G + + P +P+ + +PN+T A+NPCR+QYC+QE+++ RE+L
Sbjct: 361 IPGPQDPGPGNILPR---PPIPESLRQVVTTKIPNATFASNPCRIQYCTQEVVIFREDLT 417
Query: 579 SKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVIL 637
+KMCRN + P + DI ++TL++Q L LPL++ PVYW +L +YP+PDL+IL
Sbjct: 418 NKMCRNSLHLPSDMKDIPNQLLKTLLAQAHLCPLPLHVRPVYWGYDASLRVYPIPDLLIL 477
Query: 638 GDQLNAYTIQNTDCIFINP 656
D+ + YT DC NP
Sbjct: 478 ADKYDPYTCSALDCQSTNP 496
Score = 94.7 bits (234), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 74/127 (58%), Gaps = 8/127 (6%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 72
+++E EC R ++ F +I AFD+P F ++ + KKF V + L +++ KS+
Sbjct: 64 EVVETAVQECSRDPSEDSDKAFCIIDAFDVPTFAFNSERKKFFPVSGRSALHPNAEVKSE 123
Query: 73 LFRERYNIIRQRTLRHSLFNNI--------NPNADSVKLDWVEYLMSLTNVNHKTVVLGM 124
L++ERY +I+QRT+RH LF+N+ N +D L VEYL+ T +VLGM
Sbjct: 124 LYKERYTVIQQRTIRHELFSNVGDLEAVKQNQTSDKFDLKTVEYLLGSTGSLGNVIVLGM 183
Query: 125 ISQLKEN 131
++Q+KE
Sbjct: 184 LTQIKEG 190
>gi|440907239|gb|ELR57408.1| DNA polymerase epsilon subunit 2 [Bos grunniens mutus]
Length = 533
Score = 324 bits (830), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 178/451 (39%), Positives = 265/451 (58%), Gaps = 39/451 (8%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + + IF++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTS------YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPE 390
++FLEDPTG +QLDL S +H GLYTE+C VL EG ++DQ+ HV+A GFPP E
Sbjct: 193 GKFFLEDPTGTIQLDLKLFSLITVYQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTE 252
Query: 391 ASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCE 450
S +R Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V E
Sbjct: 253 PSSTTRAYYGNTNFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LE 308
Query: 451 FITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKH 506
+ F G+ P + N Y ++ +++ L + C ++P S+
Sbjct: 309 KLHIMFSGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPNIHQSSRF 367
Query: 507 VSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYC 566
V E I+P+ P + IT+EF+ VP S TNPCR+QYC
Sbjct: 368 VFVPGPEDPGFGSILPR-------------PPFAESITNEFRQRVPFSVFTTNPCRIQYC 414
Query: 567 SQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGA 625
+QEI+V RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ A
Sbjct: 415 TQEIIVFREDLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDYA 474
Query: 626 LSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
L +YP+PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 LRVYPVPDLLVIADKYDPFTLTNTECLCINP 505
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + + IF++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|281343418|gb|EFB19002.1| hypothetical protein PANDA_010969 [Ailuropoda melanoleuca]
Length = 480
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 180/449 (40%), Positives = 262/449 (58%), Gaps = 37/449 (8%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP+F Y + KKF + L + K++LFRE
Sbjct: 50 ECSQSVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 109
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + +L +E L+ T +VLGMI+QLKE
Sbjct: 110 RYTILHQRTHRHELFTPPVVGSHPDETGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 169
Query: 337 NRYFLEDPTGIVQLDLSQTS----YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEAS 392
++FLEDPTG VQLDLS+ Y GLYTE+C VL EG ++DQ+ HV+A GFPP E S
Sbjct: 170 GKFFLEDPTGTVQLDLSKAISLFIYLFGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPS 229
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI 452
+R Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD +V L
Sbjct: 230 STTRAYYGNVNFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQGEVLGKL---- 285
Query: 453 TSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVS 508
+ F G+ P + N Y ++ +++ L + C ++P S+ V
Sbjct: 286 HTMFSGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPSIHQSSRFVF 344
Query: 509 KNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQ 568
E I+P+ P L + ITSEF+ VP S TNPCR+QYC+Q
Sbjct: 345 VPGPEDPGFGSILPR-------------PPLGESITSEFRQRVPFSVFTTNPCRIQYCTQ 391
Query: 569 EILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALS 627
EI+V RE+L++KMCRNC++ P D+ HFV+T++SQG L LPL +CPVYW+ AL
Sbjct: 392 EIIVFREDLVNKMCRNCVRSPTSNLDLPTHFVKTILSQGHLSPLPLYVCPVYWAYDYALR 451
Query: 628 LYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+YP+PDL+++ D+ + +T NT+C+ INP
Sbjct: 452 VYPVPDLLVIADKYDPFTSTNTECLCINP 480
Score = 78.2 bits (191), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 46/128 (35%), Positives = 68/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E IF++I AFDIP+F Y + KKF + L +
Sbjct: 43 VVEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARD 102
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + +L +E L+ T +VLG
Sbjct: 103 KAELFRERYTILHQRTHRHELFTPPVVGSHPDETGSKFQLKTIETLLGSTTKIGDVIVLG 162
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 163 MITQLKEG 170
>gi|351710609|gb|EHB13528.1| DNA polymerase epsilon subunit 2, partial [Heterocephalus glaber]
Length = 443
Score = 322 bits (826), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 180/439 (41%), Positives = 260/439 (59%), Gaps = 37/439 (8%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFK---LVDKKR-KLCADSDAKSKLFRERYNIIRQRTL 292
E IF++I AFD+P+F Y+ + KKF + D L + K++L+RERY I+ QRT
Sbjct: 1 EHIFNIIGAFDVPRFVYNSERKKFLPLLMTDHPAPNLFGTARDKAELYRERYTILHQRTH 60
Query: 293 RHSLFN----NINPN--ADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
RH LF +PN +L VE L+ T +VLGMI+QLKE ++FLEDPTG
Sbjct: 61 RHELFTPPVIGSHPNEIGGKFQLKTVETLLGSTTKIGDVIVLGMITQLKEGKFFLEDPTG 120
Query: 347 IVQLDLSQ----TSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQ 402
VQLDL++ T +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R Y+GN
Sbjct: 121 TVQLDLNKAISFTFFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTRAYYGNI 180
Query: 403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN 462
N +GGPS +S+K+ ++ ++E N++AM V +SDV LD +V L + F G+ P
Sbjct: 181 NFFGGPSNISVKTSAKLKQLEDENKDAMFVFISDVWLDQVEVLEKL----HTMFSGYSPV 236
Query: 463 ST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
+ N Y +I +++ L + C ++P S+ V E
Sbjct: 237 PPTCFILCGNFSSAPYGKNQIQALKDSLKTLADIIC-EYPNIHQSSRFVFVPGPEDPGFG 295
Query: 519 LIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 578
I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI++ RE+L+
Sbjct: 296 SILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIIFREDLV 342
Query: 579 SKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVIL 637
+KMCRNC+ FP DI HFV+T+ SQG L LPL +CPV+W+ AL +YP+PDL+++
Sbjct: 343 NKMCRNCVHFPSSNLDIPNHFVKTVFSQGHLTPLPLYVCPVHWAYDYALRVYPVPDLLVI 402
Query: 638 GDQLNAYTIQNTDCIFINP 656
D+ + +T+ NT+C+ INP
Sbjct: 403 ADKYDPFTVTNTECLCINP 421
Score = 72.8 bits (177), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 62/111 (55%), Gaps = 10/111 (9%)
Query: 31 EQIFSVISAFDIPQFDYDPDLKKFK---LVDKKR-KLCADSDAKSKLFRERYNIIRQRTL 86
E IF++I AFD+P+F Y+ + KKF + D L + K++L+RERY I+ QRT
Sbjct: 1 EHIFNIIGAFDVPRFVYNSERKKFLPLLMTDHPAPNLFGTARDKAELYRERYTILHQRTH 60
Query: 87 RHSLFN----NINPN--ADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
RH LF +PN +L VE L+ T +VLGMI+QLKE
Sbjct: 61 RHELFTPPVIGSHPNEIGGKFQLKTVETLLGSTTKIGDVIVLGMITQLKEG 111
>gi|431893721|gb|ELK03542.1| DNA polymerase epsilon subunit 2 [Pteropus alecto]
Length = 535
Score = 320 bits (821), Expect = 1e-84, Method: Compositional matrix adjust.
Identities = 179/453 (39%), Positives = 267/453 (58%), Gaps = 41/453 (9%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETIEHIFNIIGAFDIPRFIYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDL-----SQT---SYHPGLYTENCIVLVEGHYKDQILHVDALGFPP 388
++FLEDPTG VQLDL S T +H GLYTE+C VL EG ++DQ+ HV+A GFPP
Sbjct: 193 GKFFLEDPTGTVQLDLRIKLFSSTVIYQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPP 252
Query: 389 PEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNL 448
E S +R Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V
Sbjct: 253 TEPSNTTRAYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV---- 308
Query: 449 CEFITSEFQGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDIS 504
E + + F G+ P + N Y + ++ +++ L + C ++P S
Sbjct: 309 LEKLHTMFSGYSPVPPTCFILCGNFSSAPYGTNQVQALKDSLKTLADIIC-EYPSIHQSS 367
Query: 505 KHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQ 564
+ V E I+P+ P L IT+EF+ +P S TNPCR+Q
Sbjct: 368 RFVFVPGPEDPGFGSILPR-------------PPLADSITNEFRQRIPFSVFTTNPCRIQ 414
Query: 565 YCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQY 623
+C+QEI+V RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+
Sbjct: 415 FCTQEIIVFREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVSPVYWAYD 474
Query: 624 GALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
AL +YP+PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 YALRVYPVPDLLVIADKYDPFTLTNTECLCINP 507
Score = 80.1 bits (196), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 54/164 (32%), Positives = 86/164 (52%), Gaps = 20/164 (12%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E IF++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHIFNIIGAFDIPRFIYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKENITTSGLLGKH--QSPHLNLLCLIWVKIFICTLIFIF 165
MI+QLKE GK + P + + +K+F T+I+ F
Sbjct: 186 MITQLKE--------GKFFLEDPTGTVQLDLRIKLFSSTVIYQF 221
>gi|390346112|ref|XP_796825.2| PREDICTED: DNA polymerase epsilon subunit 2 [Strongylocentrotus
purpuratus]
Length = 524
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 176/441 (39%), Positives = 257/441 (58%), Gaps = 29/441 (6%)
Query: 226 SECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYN 285
+EC E++F+VI +F +P++ Y+ + KKF + + L A + K+ LFRERYN
Sbjct: 71 NECSDGGKEENEKMFNVIDSFTVPRYTYNAERKKFLMSNDAPNLHASAKYKADLFRERYN 130
Query: 286 IIRQRTLRHSLFNNINPNADS------VKLDWVEYLMSLTNVNHKTVVLGMISQLKENRY 339
I+ QRT RHSLF+ A + +L VE+L+ T + +VLGM++QLKE ++
Sbjct: 131 ILLQRTSRHSLFSPPVQGASNETQGKKFQLKPVEFLLGSTAKLGELIVLGMLTQLKEGKF 190
Query: 340 FLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYF 399
LEDPTG VQLDL++ +H GL+TENC VL EG Y+D++ HV+ GFPP E + +R YF
Sbjct: 191 HLEDPTGAVQLDLAKAQFHTGLFTENCFVLAEGWYEDEVFHVNGFGFPPAEPADTTRSYF 250
Query: 400 GNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLD----NDKVRNNLCEFITSE 455
GN N +GGPS KS ++ E+ E+AM+V LSDV LD DK+R L +
Sbjct: 251 GNLNFFGGPSATCAKSSTKLKLCEQEKEDAMMVFLSDVWLDKVDVQDKLRILLTGYSEMP 310
Query: 456 FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
FV + P Y +++E L + C + S V ++
Sbjct: 311 PMCFVFCGNFTSTP----YGPSHNKILKESLQTLANMIC-------EFSTLVEQSR---- 355
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
IF+ P+ G V + P +P+ +T VP + TNPCR+QYC+QEI+V +E
Sbjct: 356 FIFVPGPEDPGPGNVLPR---PPIPECLTEVITSKVPTAVFTTNPCRLQYCTQEIIVFKE 412
Query: 576 ELLSKMCRNCIKFPE-EGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+++ KMCRNCI+FP+ +I HFV+T+VSQG L LPL++CPVYW+ AL +YPLPD+
Sbjct: 413 DIVMKMCRNCIRFPDNNNEIPDHFVKTIVSQGHLCPLPLHVCPVYWAYDNALRIYPLPDV 472
Query: 635 VILGDQLNAYTIQNTDCIFIN 655
++LGD+ + +TI N N
Sbjct: 473 IVLGDKYDPFTITNVGTTCTN 493
Score = 85.9 bits (211), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 48/124 (38%), Positives = 72/124 (58%), Gaps = 6/124 (4%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL 73
+IE NEC E++F+VI +F +P++ Y+ + KKF + + L A + K+ L
Sbjct: 65 IIEAAINECSDGGKEENEKMFNVIDSFTVPRYTYNAERKKFLMSNDAPNLHASAKYKADL 124
Query: 74 FRERYNIIRQRTLRHSLFNNINPNADS------VKLDWVEYLMSLTNVNHKTVVLGMISQ 127
FRERYNI+ QRT RHSLF+ A + +L VE+L+ T + +VLGM++Q
Sbjct: 125 FRERYNILLQRTSRHSLFSPPVQGASNETQGKKFQLKPVEFLLGSTAKLGELIVLGMLTQ 184
Query: 128 LKEN 131
LKE
Sbjct: 185 LKEG 188
>gi|410898140|ref|XP_003962556.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Takifugu
rubripes]
Length = 528
Score = 319 bits (818), Expect = 3e-84, Method: Compositional matrix adjust.
Identities = 175/443 (39%), Positives = 261/443 (58%), Gaps = 30/443 (6%)
Query: 226 SECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFR 281
S+ C I++ +F++I AFD+P++ Y + KKF + LC + K++LFR
Sbjct: 76 SQSCDENIDN---VFNIIGAFDVPRYIYSVERKKFIPLSMTSHPAPSLCGWAKDKAELFR 132
Query: 282 ERYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLK 335
ERY I++QR RH LF ++ + +L +E L+ T + +VLGMI+QLK
Sbjct: 133 ERYTILQQRIHRHELFTPPAIGTAVDEGQNKFQLKTIEALLGSTAKMGEVIVLGMITQLK 192
Query: 336 ENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNS 395
E +++LED +G VQLD+S+ +H GLYTE+C VL EG Y+D + HV+ GFPP E S +
Sbjct: 193 EGKFYLEDLSGTVQLDMSKAQFHNGLYTESCFVLAEGWYEDSVFHVNGFGFPPTEPSSAT 252
Query: 396 RLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSE 455
R Y+G+ N +GGPS S+K+ ++ ++E+ NE+AM VILSDV LDN +V L + S
Sbjct: 253 RAYYGSMNFFGGPSSTSVKASAKLKQLEEENEDAMFVILSDVWLDNVEVLEKL-NLMFSG 311
Query: 456 FQGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P N Y + I +++ L + C H + +N +
Sbjct: 312 YSSMPPTCFIFIGNFSSAPYGNARIKSLKDSLKALADVIC----------AHPNIHNSSR 361
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVR 574
FL VP G + + P L IT EF+ VP S TNPCRVQYCSQEIL+ R
Sbjct: 362 ---FLFVPGPEDPGP-GAILPRPPLANHITEEFRQRVPFSVFTTNPCRVQYCSQEILIFR 417
Query: 575 EELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
E+L++KMCRNC++ P + DI HFV+T++SQG L LPL + PVYW+ +L +YP+PD
Sbjct: 418 EDLVNKMCRNCVRLPHDNLDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYSLRVYPVPD 477
Query: 634 LVILGDQLNAYTIQNTDCIFINP 656
+++ D+ + ++I +TDC+ INP
Sbjct: 478 VIVFADKYDPFSITSTDCLCINP 500
Score = 72.8 bits (177), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDA 69
+ E +C ++ + + +F++I AFD+P++ Y + KKF + LC +
Sbjct: 67 VAESAVQDCSQSCDENIDNVFNIIGAFDVPRYIYSVERKKFIPLSMTSHPAPSLCGWAKD 126
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I++QR RH LF ++ + +L +E L+ T + +VLG
Sbjct: 127 KAELFRERYTILQQRIHRHELFTPPAIGTAVDEGQNKFQLKTIEALLGSTAKMGEVIVLG 186
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 187 MITQLKEG 194
>gi|395838696|ref|XP_003792246.1| PREDICTED: DNA polymerase epsilon subunit 2 [Otolemur garnettii]
Length = 493
Score = 319 bits (817), Expect = 4e-84, Method: Compositional matrix adjust.
Identities = 177/441 (40%), Positives = 255/441 (57%), Gaps = 59/441 (13%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E F++I AFDIP+F Y+ + KKF + + + K++LFRE
Sbjct: 73 ECSQSFDETIEHAFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNVFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +P+ K L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYIILHQRTHRHELFTPPVIGAHPDETGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD +V L
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDRVEVLEKL-------- 304
Query: 457 QGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
TM ++ +V E +S +IS+ V E
Sbjct: 305 ------RTMFSDS-----------IVLETFISSFI----------NISRFVFVPGPEDPG 337
Query: 517 IFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
I+P+ P L + ITSEF+ VP S TNPCR+QYC+QEI+V RE+
Sbjct: 338 FGAILPR-------------PPLAESITSEFRQRVPFSVFTTNPCRIQYCTQEIIVFRED 384
Query: 577 LLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
L++KMCRNC++FP I HFV+T++SQG L LPL++ PVYW+ L +YP+PDL+
Sbjct: 385 LVNKMCRNCVRFPSSSLPIPNHFVKTILSQGHLAPLPLHVSPVYWAFDYTLRVYPVPDLI 444
Query: 636 ILGDQLNAYTIQNTDCIFINP 656
++ D+ + +T+ NT+C+ INP
Sbjct: 445 VIADKYDPFTLTNTECLCINP 465
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 68/127 (53%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAK 70
+E EC ++ + E F++I AFDIP+F Y+ + KKF + + + K
Sbjct: 67 VEAAVQECSQSFDETIEHAFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNVFGTARDK 126
Query: 71 SKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY I+ QRT RH LF +P+ K L +E L+ T+ +VLGM
Sbjct: 127 AELFRERYIILHQRTHRHELFTPPVIGAHPDETGSKFQLKTIETLLGSTSKIGDVIVLGM 186
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 187 ITQLKEG 193
>gi|449279778|gb|EMC87254.1| DNA polymerase epsilon subunit 2 [Columba livia]
Length = 509
Score = 318 bits (816), Expect = 5e-84, Method: Compositional matrix adjust.
Identities = 176/444 (39%), Positives = 268/444 (60%), Gaps = 28/444 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
EC + + E +F++I AFDIP++ Y+ + KKF + L + K++LFRE
Sbjct: 57 ECSQAADETIENVFNIIGAFDIPRYVYNSERKKFLPLSMTNFPVPSLFGTARDKAELFRE 116
Query: 283 RYNIIRQRTLRHSLFNN----INPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY+I++QRT RH LF+ +PN + K L +E L+ T + +VLGMI+QLKE
Sbjct: 117 RYSILQQRTHRHELFSPPAVVAHPNDSTSKFQLKTIETLLGNTAKVGEVIVLGMITQLKE 176
Query: 337 NRYFLEDPTGIVQLDLSQT--SYHP-GLYTENCIVLVEGHYKDQILHVDALGFPPPEASK 393
++FLEDPTG+VQLDL+Q ++ P GLYTE+C VL EG Y+D++ HV+A GFPP E S
Sbjct: 177 GKFFLEDPTGVVQLDLTQCPFTFRPSGLYTESCFVLAEGWYEDEVFHVNAFGFPPTEPSA 236
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT 453
+R ++GN N +GGPS S+K+ ++ ++E NE+AM V LSDV LD +V L
Sbjct: 237 TTRAFYGNVNFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDVWLDQAEVLEKL----H 292
Query: 454 SEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGE 513
+ F G+ + P +C + + + +K + I +H S +
Sbjct: 293 TMFSGY-----SSAPPTCFFFCGNFSSAPYGKNHVQSLKGSLKALADV-ICEHPSIHKSS 346
Query: 514 KDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
+ +F+ P+ G++ + P L IT EF+ VP S TNPCR+QYC+QEI++
Sbjct: 347 R-FVFVPGPEDPGPGSILPR---PPLADNITEEFRQLVPFSVFTTNPCRIQYCTQEIIIF 402
Query: 574 REELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
RE+L++KMCRNC++FP DI HFV+T++SQ L LPL + PVYW+ +L +YP+P
Sbjct: 403 REDLVNKMCRNCVRFPSSNMDIPNHFVKTILSQAHLAPLPLYVSPVYWAYDHSLRVYPVP 462
Query: 633 DLVILGDQLNAYTIQNTDCIFINP 656
D++++ D+ + +T+ N DC+ INP
Sbjct: 463 DVLLIADKHDPFTVTNADCLCINP 486
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 47/127 (37%), Positives = 72/127 (56%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAK 70
+E EC + + E +F++I AFDIP++ Y+ + KKF + L + K
Sbjct: 51 VEAAVQECSQAADETIENVFNIIGAFDIPRYVYNSERKKFLPLSMTNFPVPSLFGTARDK 110
Query: 71 SKLFRERYNIIRQRTLRHSLFNN----INPNADSVK--LDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY+I++QRT RH LF+ +PN + K L +E L+ T + +VLGM
Sbjct: 111 AELFRERYSILQQRTHRHELFSPPAVVAHPNDSTSKFQLKTIETLLGNTAKVGEVIVLGM 170
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 171 ITQLKEG 177
>gi|224052013|ref|XP_002200478.1| PREDICTED: DNA polymerase epsilon subunit 2 [Taeniopygia guttata]
Length = 506
Score = 317 bits (813), Expect = 1e-83, Method: Compositional matrix adjust.
Identities = 181/442 (40%), Positives = 269/442 (60%), Gaps = 27/442 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF---KLVDKKR-KLCADSDAKSKLFRE 282
EC R + E +F++I AFDIP++ Y+ + KKF + D R L + K++LFRE
Sbjct: 52 ECSRAPDEAIENVFNIIGAFDIPRYIYNSERKKFLPLSMTDLPRPSLFGTAKDKAELFRE 111
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY+I++QRT RH LF+ + +P+ K L VE L+ + +VLGMI+QLKE
Sbjct: 112 RYSILQQRTHRHELFSPSPVDAHPDDGKSKFQLKTVETLLGNPAKVGEVIVLGMITQLKE 171
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG+VQLDLS+ +H GLYTE+ VL EG Y+D++ HV+A GFPP E S +R
Sbjct: 172 GKFFLEDPTGVVQLDLSKAQFHSGLYTESSFVLAEGWYEDEVFHVNAFGFPPTEPSATTR 231
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
++GN N +GGPS S+K+ ++ ++E+ NE+AM V +SDV LD +V L + S +
Sbjct: 232 AFYGNINFFGGPSSSSVKASAKLKQLEEENEDAMFVFVSDVWLDQAEVLEKL-HIMFSGY 290
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P N Y +I ++ L + C ++P S H S
Sbjct: 291 SSAPPTCFFFCGNFSSAPYGKNQIQSLKGSLKALADIIC-EYP-----SIHKSSR----- 339
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ G++ + P L + IT EF+ VP S TNPCRVQYC+QEI++ RE
Sbjct: 340 FVFVPGPEDPGPGSILPR---PPLAENITQEFRQLVPFSVFTTNPCRVQYCTQEIIIFRE 396
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+T++SQG L LPL + PV+W+ +L +YPLPDL
Sbjct: 397 DLVNKMCRNCVRFPNSTMDIPNHFVKTILSQGHLSPLPLYVSPVFWAYDYSLRVYPLPDL 456
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
++ D+ + +T+ ++DC+ INP
Sbjct: 457 LVTADKHDPFTVTSSDCLCINP 478
Score = 82.4 bits (202), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF---KLVDKKR-KLCADSDA 69
L+E EC R + E +F++I AFDIP++ Y+ + KKF + D R L +
Sbjct: 45 LVEAAVQECSRAPDEAIENVFNIIGAFDIPRYIYNSERKKFLPLSMTDLPRPSLFGTAKD 104
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY+I++QRT RH LF+ + +P+ K L VE L+ + +VLG
Sbjct: 105 KAELFRERYSILQQRTHRHELFSPSPVDAHPDDGKSKFQLKTVETLLGNPAKVGEVIVLG 164
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 165 MITQLKEG 172
>gi|335775299|gb|AEH58525.1| DNA polymerase epsilon subunit 2-like protein [Equus caballus]
Length = 412
Score = 313 bits (802), Expect = 2e-82, Method: Compositional matrix adjust.
Identities = 166/399 (41%), Positives = 240/399 (60%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T
Sbjct: 4 LFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKI 63
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE+C VL EG ++DQ+ HV
Sbjct: 64 GDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVS 123
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGPS S+K+ ++ ++E N++AM V LSDV LD
Sbjct: 124 AFGFPPTEPSSITRAYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFLSDVWLDQV 183
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V L + F G+ P + N Y ++ +++ L + C ++P
Sbjct: 184 EVLEKL----HTMFSGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYP 238
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
S+ V E I+P+ P L + +TSEF+ VP S T
Sbjct: 239 NIHQSSRFVFVPGPEDPGFGSILPR-------------PPLAESVTSEFRQRVPFSVFTT 285
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI+V RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CP
Sbjct: 286 NPCRIQYCTQEIIVFREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVCP 345
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YP+PDL+++ D+ + +T+ NT+CI +NP
Sbjct: 346 VYWAYDYALRVYPVPDLLVIADKYDPFTLTNTECICMNP 384
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T
Sbjct: 4 LFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKI 63
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 64 GDVIVLGMITQLKEG 78
>gi|410962208|ref|XP_003987666.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 2 [Felis catus]
Length = 501
Score = 312 bits (800), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 240/399 (60%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K++LFRERY I+ QRT RH LF ++ + +L VE L+ T
Sbjct: 93 LFGTARDKAELFRERYIILHQRTHRHELFTPPVIGSHPDETGSKFQLKTVETLLGSTTKI 152
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG VQLD+S+ +H GLYTE+C VL EG ++DQ+ HV+
Sbjct: 153 GDVIVLGMITQLKEGKFFLEDPTGTVQLDISKAQFHSGLYTESCFVLAEGWFEDQVFHVN 212
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD
Sbjct: 213 AFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQG 272
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V L + F G+ P + N Y ++ +++ L + C ++P
Sbjct: 273 EVLGKL----HTMFSGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYP 327
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
S+ V E I+P+ P L + IT EF+ VP S T
Sbjct: 328 NIHQSSRFVFVPGPEDPGFGSILPR-------------PPLAESITDEFRQRVPFSIFTT 374
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI+V RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CP
Sbjct: 375 NPCRIQYCTQEIIVFREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVCP 434
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YP+PDL+++ D+ + +T+ NT+C+ +NP
Sbjct: 435 VYWAYDYALRVYPVPDLLVIADKYDPFTVTNTECLCMNP 473
Score = 52.4 bits (124), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 41/75 (54%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K++LFRERY I+ QRT RH LF ++ + +L VE L+ T
Sbjct: 93 LFGTARDKAELFRERYIILHQRTHRHELFTPPVIGSHPDETGSKFQLKTVETLLGSTTKI 152
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 153 GDVIVLGMITQLKEG 167
>gi|340374779|ref|XP_003385915.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Amphimedon
queenslandica]
Length = 520
Score = 312 bits (800), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 172/457 (37%), Positives = 268/457 (58%), Gaps = 25/457 (5%)
Query: 220 NWLKLSSECCRTEINSE-EQIFSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDAKS 277
+ ++ + E C E +S+ ++ +I+AF+ P F Y+PD KKF + KL A + K+
Sbjct: 63 DVIETAVEECNQETDSDPDKALVLINAFETPPFTYNPDQKKFLPIPLPSMKLFASATQKT 122
Query: 278 KLFRERYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMI 331
KLFRERYN+I QRT+RH LF+ + +L +EYL+S + + K +VLGM+
Sbjct: 123 KLFRERYNLIYQRTVRHHLFSPPVVGAAGSSKGPKFRLHTIEYLLSSSGLPDKIIVLGML 182
Query: 332 SQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEA 391
QL+E +++LED TG ++LDLS +H GL+ EN IVL EG +KD + H+ A+G PP E+
Sbjct: 183 IQLRERKFYLEDLTGKIELDLSACLFHTGLFVENSIVLAEGLFKDGVFHLSAIGCPPIES 242
Query: 392 SKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEF 451
S +R YFG N +GGPSP++ K+ ++ M K N+ M+V SD+ LD+DKV L
Sbjct: 243 SAITRNYFGTVNFFGGPSPIAAKASVKLQDMLKGNQGVMLVFFSDLFLDDDKVLEKL-PL 301
Query: 452 ITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN 511
+ S + F P + + + S R + L F GDI +
Sbjct: 302 LFSGYSDFPPAAFIFMG----NFSSTPYGADRHKRLKD------SFKALGDIMLNYPDLL 351
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
+ F+ P G + + P +P ++TS+ + N T +NPCR+Q+C++EI+
Sbjct: 352 EKSQFFFVPGPLDPGPGDILPR---PPIPSYLTSDITSRISNVTFCSNPCRIQFCTREIV 408
Query: 572 VVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
V RE++L+KM R+C++FP EG D++ HF +T++SQG L LPL+ P+YW AL LYP
Sbjct: 409 VFREDILTKMSRHCVRFPTEGTDMANHFTKTILSQGHLCPLPLHSRPIYWMYDHALRLYP 468
Query: 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFE 667
LPDLV++GD+ N +++ + DC+ +N + +N FE
Sbjct: 469 LPDLVMIGDKCNPFSVTSGDCMVVNT--GSFPKNGFE 503
Score = 87.8 bits (216), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/155 (36%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDAKS 71
D+IE EC + + ++ +I+AF+ P F Y+PD KKF + KL A + K+
Sbjct: 63 DVIETAVEECNQETDSDPDKALVLINAFETPPFTYNPDQKKFLPIPLPSMKLFASATQKT 122
Query: 72 KLFRERYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMI 125
KLFRERYN+I QRT+RH LF+ + +L +EYL+S + + K +VLGM+
Sbjct: 123 KLFRERYNLIYQRTVRHHLFSPPVVGAAGSSKGPKFRLHTIEYLLSSSGLPDKIIVLGML 182
Query: 126 SQLKE-NITTSGLLGKHQSPHLNL-LCLIWVKIFI 158
QL+E L GK + L+L CL +F+
Sbjct: 183 IQLRERKFYLEDLTGKIE---LDLSACLFHTGLFV 214
>gi|390469050|ref|XP_003734042.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 2 [Callithrix
jacchus]
Length = 504
Score = 312 bits (799), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 242/399 (60%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K++LFRERY I+ QRT RH LF +N + + +L +E L+ T
Sbjct: 96 LFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSNPDESGSKFQLKTIETLLGSTTKI 155
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE C VL EG +++Q+ HV+
Sbjct: 156 GDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEEQVFHVN 215
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+G+ N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD
Sbjct: 216 AFGFPPTEPSSTTRAYYGSINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQV 275
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V E + F G+ P + N Y ++ +++ L + C ++P
Sbjct: 276 EV----LEKLRIMFSGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYP 330
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
+ S+ V + E I+P+ P L + IT+EF+ VP S T
Sbjct: 331 DIHQSSRFVFVSGPEDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTT 377
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI+V RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CP
Sbjct: 378 NPCRIQYCTQEIIVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTVLSQGHLTPLPLYVCP 437
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YPLPDL+++ D+ + +T+ NT+C+ INP
Sbjct: 438 VYWAYDYALRVYPLPDLLVIADKYDPFTMTNTECLCINP 476
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K++LFRERY I+ QRT RH LF +N + + +L +E L+ T
Sbjct: 96 LFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSNPDESGSKFQLKTIETLLGSTTKI 155
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 156 GDVIVLGMITQLKEG 170
>gi|426233092|ref|XP_004010551.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 2 [Ovis aries]
Length = 501
Score = 311 bits (797), Expect = 7e-82, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 242/399 (60%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T+
Sbjct: 93 LFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKI 152
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG +QLDLS+ +H GLYTE+C VL EG ++DQ+ HV+
Sbjct: 153 GDVIVLGMITQLKEGKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVN 212
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD
Sbjct: 213 AFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQV 272
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V E + F G+ P + N V Y ++ +++ L + C ++P
Sbjct: 273 EV----LEKLHIMFSGYSPAPPTCFILCGNFSSVPYGKNQVQALKDSLKTLADIIC-EYP 327
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
S+ V E I+P+ P + IT+EF+ VP S T
Sbjct: 328 NIHQSSRFVFVPGPEDPGFGSILPR-------------PPFAESITNEFRQRVPFSVFTT 374
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI+V RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CP
Sbjct: 375 NPCRIQYCTQEIIVFREDLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCP 434
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YP+PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 435 VYWAYDYALRVYPVPDLLVIADKYDPFTLTNTECLCINP 473
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T+
Sbjct: 93 LFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKI 152
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 153 GDVIVLGMITQLKEG 167
>gi|114652889|ref|XP_001152861.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 2 [Pan
troglodytes]
Length = 501
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 240/399 (60%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K+++FRERY I+ QRT RH LF ++ + + +L +E L+ +T
Sbjct: 93 LFGTARDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGITTKI 152
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+
Sbjct: 153 GDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVN 212
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD
Sbjct: 213 AFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQV 272
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V E + F G+ P + N Y ++ +++ L + C ++P
Sbjct: 273 EV----LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYP 327
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
+ S+ V E I+P+ P L + IT+EF+ VP S T
Sbjct: 328 DIHQSSRFVFVPGPEDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTT 374
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI V RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CP
Sbjct: 375 NPCRIQYCTQEITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCP 434
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YP+PDL+++ D+ + +T NT+C+ INP
Sbjct: 435 VYWAYDYALRVYPVPDLLVIADKYDPFTTTNTECLCINP 473
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K+++FRERY I+ QRT RH LF ++ + + +L +E L+ +T
Sbjct: 93 LFGTARDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGITTKI 152
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 153 GDVIVLGMITQLKEG 167
>gi|332237022|ref|XP_003267699.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 2 [Nomascus
leucogenys]
Length = 501
Score = 310 bits (795), Expect = 1e-81, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 241/399 (60%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T
Sbjct: 93 LFGTARDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKI 152
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+
Sbjct: 153 GDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVN 212
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD
Sbjct: 213 AFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQV 272
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V E + F G+ P + N Y ++ +++ L + C ++P
Sbjct: 273 EV----LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYP 327
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
+ S+ V E I+P+ P L + IT+EF+ VP S T
Sbjct: 328 DIHQSSRFVFVPGPEDPEFGSILPR-------------PPLAESITNEFRQRVPFSVFTT 374
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI+V RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CP
Sbjct: 375 NPCRIQYCTQEIIVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCP 434
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YP+PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 435 VYWAYDYALRVYPVPDLLVIADKYDPFTMTNTECLCINP 473
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T
Sbjct: 93 LFGTARDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKI 152
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 153 GDVIVLGMITQLKEG 167
>gi|350579064|ref|XP_003121854.3| PREDICTED: DNA polymerase epsilon subunit 2-like isoform 1 [Sus
scrofa]
Length = 501
Score = 310 bits (794), Expect = 2e-81, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 241/399 (60%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K++LFRERY I+ QRT RH LF ++ + + +L VE L+ T+
Sbjct: 93 LFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKI 152
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG V LDLS+ +H GLYTE+C VL EG ++DQI HV+
Sbjct: 153 GDVIVLGMITQLKEGKFFLEDPTGTVPLDLSKAQFHSGLYTESCFVLAEGWFEDQIFHVN 212
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD
Sbjct: 213 AFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQV 272
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V E + + F G+ P + N Y ++ +++ L + C ++P
Sbjct: 273 EV----LEKLHTMFSGYSPAPPTCFILCGNFSSTPYGKNQVQALKDSLKTLADIIC-EYP 327
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
S+ V E I+P+ P + IT+EF+ VP S T
Sbjct: 328 NIHQSSRFVFVPGPEDPGFGSILPR-------------PPFAESITNEFRQRVPYSVFTT 374
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI+V RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CP
Sbjct: 375 NPCRIQYCTQEIIVFREDLVNKMCRNCVRFPGSNLDIPNHFVKTILSQGHLTPLPLYVCP 434
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YP+PDL+++ D+ + +T+ NT+C+ +NP
Sbjct: 435 VYWAYDYALRVYPVPDLLVIADKYDPFTLTNTECLCLNP 473
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K++LFRERY I+ QRT RH LF ++ + + +L VE L+ T+
Sbjct: 93 LFGTARDKAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKI 152
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 153 GDVIVLGMITQLKEG 167
>gi|28193232|emb|CAD62358.1| unnamed protein product [Homo sapiens]
Length = 506
Score = 309 bits (791), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 163/392 (41%), Positives = 237/392 (60%), Gaps = 29/392 (7%)
Query: 276 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 329
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 105 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 164
Query: 330 MISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPP 389
MI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP
Sbjct: 165 MITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPT 224
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC 449
E S +R Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V
Sbjct: 225 EPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----L 280
Query: 450 EFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 505
E + F G+ P + N Y ++ +++ L + C ++P+ S+
Sbjct: 281 EKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSR 339
Query: 506 HVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQY 565
V E I+P+ P L + IT+EF+ VP S TNPCR+QY
Sbjct: 340 FVFVPGPEDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQY 386
Query: 566 CSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYG 624
C+QEI V RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+
Sbjct: 387 CTQEITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDY 446
Query: 625 ALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
AL +YP+PDL+++ D+ + +T NT+C+ INP
Sbjct: 447 ALRVYPVPDLLVIADKYDPFTTTNTECLCINP 478
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 105 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 164
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 165 MITQLKEG 172
>gi|309747079|ref|NP_001184259.1| DNA polymerase epsilon subunit 2 isoform 2 [Homo sapiens]
gi|194375524|dbj|BAG56707.1| unnamed protein product [Homo sapiens]
Length = 501
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 163/392 (41%), Positives = 237/392 (60%), Gaps = 29/392 (7%)
Query: 276 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 329
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 100 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 159
Query: 330 MISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPP 389
MI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP
Sbjct: 160 MITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPT 219
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC 449
E S +R Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V
Sbjct: 220 EPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----L 275
Query: 450 EFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 505
E + F G+ P + N Y ++ +++ L + C ++P+ S+
Sbjct: 276 EKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSR 334
Query: 506 HVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQY 565
V E I+P+ P L + IT+EF+ VP S TNPCR+QY
Sbjct: 335 FVFVPGPEDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQY 381
Query: 566 CSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYG 624
C+QEI V RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+
Sbjct: 382 CTQEITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDY 441
Query: 625 ALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
AL +YP+PDL+++ D+ + +T NT+C+ INP
Sbjct: 442 ALRVYPVPDLLVIADKYDPFTTTNTECLCINP 473
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 6/68 (8%)
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 100 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 159
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 160 MITQLKEG 167
>gi|397523552|ref|XP_003831793.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 2 [Pan
paniscus]
gi|426376834|ref|XP_004055187.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 2 [Gorilla
gorilla gorilla]
Length = 501
Score = 309 bits (791), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 164/399 (41%), Positives = 239/399 (59%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T
Sbjct: 93 LFGTARDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKI 152
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+
Sbjct: 153 GDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVN 212
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD
Sbjct: 213 AFGFPPTEPSSTTRAYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQV 272
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V E + F G+ P + N Y ++ +++ L + C ++P
Sbjct: 273 EV----LEKLRIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYP 327
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
+ S+ V E I+P+ P L + IT+EF+ VP S T
Sbjct: 328 DIHQSSRFVFVPGPEDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTT 374
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI V RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CP
Sbjct: 375 NPCRIQYCTQEITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCP 434
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YP+PDL+++ D+ + +T NT+C+ INP
Sbjct: 435 VYWAYDYALRVYPVPDLLVIADKYDPFTTTNTECLCINP 473
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T
Sbjct: 93 LFGTARDKAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKI 152
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 153 GDVIVLGMITQLKEG 167
>gi|73962856|ref|XP_863300.1| PREDICTED: DNA polymerase epsilon subunit 2 isoform 2 [Canis lupus
familiaris]
Length = 501
Score = 308 bits (788), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 163/399 (40%), Positives = 239/399 (59%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
L + K++LF ERY I+ QRT RH LF ++ + +L +E L+ T
Sbjct: 93 LFGTARDKAELFLERYTILHQRTHRHELFTPPVIGSHPDETGSKFQLKTIETLLGSTAKI 152
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE+C VL EG ++D++ HV+
Sbjct: 153 GDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTESCFVLAEGWFEDRVFHVN 212
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD
Sbjct: 213 AFGFPPTEPSSTTRAYYGNVNFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQG 272
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V L + F G+ P M N Y +I +++ L + C ++P
Sbjct: 273 EVLRKL----HTMFSGYSPAPPTCFIMCGNFSSAPYGKSQIQALKDSLKTLADIIC-EYP 327
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
S+ V E I+P+ P + + IT+EF+ VP S T
Sbjct: 328 NIHQSSRFVFIPGPEDPGFGSILPR-------------PPIAESITNEFRQRVPFSVFTT 374
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI+V RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + P
Sbjct: 375 NPCRIQYCTQEIIVFREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVSP 434
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ AL +YP+PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 435 VYWAYDYALRVYPVPDLLVIADKYDPFTLTNTECLCINP 473
Score = 49.3 bits (116), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 40/75 (53%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
L + K++LF ERY I+ QRT RH LF ++ + +L +E L+ T
Sbjct: 93 LFGTARDKAELFLERYTILHQRTHRHELFTPPVIGSHPDETGSKFQLKTIETLLGSTAKI 152
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 153 GDVIVLGMITQLKEG 167
>gi|348572139|ref|XP_003471851.1| PREDICTED: DNA polymerase epsilon subunit 2-like isoform 2 [Cavia
porcellus]
Length = 501
Score = 307 bits (786), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 236/399 (59%), Gaps = 29/399 (7%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVN 322
L + K++L+RERY I+ QRT RH LF +P+A K L +E L+ T
Sbjct: 93 LFGTARDKAELYRERYTILHQRTHRHELFTPPVVGSHPDAMGSKFQLKTIESLLGSTTKI 152
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVD 382
+VLGMI+QLKE ++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+
Sbjct: 153 GDVIVLGMITQLKEGKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVN 212
Query: 383 ALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDND 442
A GFPP E S +R Y+GN N +GGP S+K+ ++ ++E N++AM V +SDV LD
Sbjct: 213 AFGFPPTEPSSTTRAYYGNINFFGGPFNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQV 272
Query: 443 KVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+V E + + F G+ P + N Y ++ +++ L + C + P
Sbjct: 273 EV----LEKLHTMFSGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EHP 327
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT 558
S+ V E I+P+ P L + IT+EF+ VP S T
Sbjct: 328 NIHQSSRFVFVPGPEDPGFGSILPR-------------PPLAESITNEFRQRVPYSVFTT 374
Query: 559 NPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCP 617
NPCR+QYC+QEI+V RE+L++KMCRNC+ FP DI HF +T++SQG L LPL +CP
Sbjct: 375 NPCRIQYCTQEIIVFREDLVNKMCRNCVHFPSSNLDIPNHFAKTVISQGHLTPLPLYVCP 434
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
VYW+ L +YP+PDL+++ D+ + +T+ NTDC+ INP
Sbjct: 435 VYWAYDYTLRVYPVPDLLVIADKYDPFTVTNTDCLCINP 473
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/75 (41%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVN 116
L + K++L+RERY I+ QRT RH LF +P+A K L +E L+ T
Sbjct: 93 LFGTARDKAELYRERYTILHQRTHRHELFTPPVVGSHPDAMGSKFQLKTIESLLGSTTKI 152
Query: 117 HKTVVLGMISQLKEN 131
+VLGMI+QLKE
Sbjct: 153 GDVIVLGMITQLKEG 167
>gi|321461047|gb|EFX72083.1| hypothetical protein DAPPUDRAFT_308600 [Daphnia pulex]
Length = 523
Score = 305 bits (781), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 170/446 (38%), Positives = 251/446 (56%), Gaps = 31/446 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRK--LCADSDAKSKLF 280
+ + ECC+ E + + +VISAFD+P+F Y+ + KK+ D L D KS++F
Sbjct: 69 RAAKECCQNEFDETTVLLNVISAFDVPKFVYNTERKKYLSFDAPHSINLFGDPRDKSEMF 128
Query: 281 RERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
R RY I+ QRT RHSLF + + + +L +EYL+ ++ VVLGM++ L
Sbjct: 129 RHRYAILHQRTSRHSLFTPSVLGSGSTASQNKYQLQPIEYLLGMSTKLTNLVVLGMLTYL 188
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
E + LED TG V + L T++H GL+TENC VL +G+++D + H++ LG PPPE +K
Sbjct: 189 TEGKLHLEDMTGSVPISLKDTNFHGGLFTENCFVLGQGYFQDGVFHIEHLGMPPPEPAKI 248
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
+R YFGN N +GG S +LK ++ +E+ N +AM+V LSDV LD +V L
Sbjct: 249 TRTYFGNTNFFGGSSTSTLKVSVKLKAIEEQNPDAMMVFLSDVWLDQTRVMEKLRIL--- 305
Query: 455 EFQGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKN 510
F G+ + + N C+ +R +L + +FP
Sbjct: 306 -FAGYCEDPPICFVLMGNFLSGTTCNTSSSHLR-QLFKSLAEMIKEFP------------ 351
Query: 511 NGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEI 570
N + F+ VP G + + P L + I +EF +P+ TNPCR+QY ++EI
Sbjct: 352 NLVEQTRFIFVPGPSDSG-FCNILPRPPLAEVIRAEFVQRIPSGIFTTNPCRIQYGTKEI 410
Query: 571 LVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
+V+RE++L+KMCRN I FP + DI + F +TL SQG L LP +CPVYW AL LYP
Sbjct: 411 VVLREDILTKMCRNAINFPSD-DIPQQFAKTLTSQGHLCPLPGEICPVYWPYDHALYLYP 469
Query: 631 LPDLVILGDQLNAYTIQNTDCIFINP 656
LPD+V++GD+L +T QN DC+ NP
Sbjct: 470 LPDVVVVGDRLGGFTAQNMDCVIFNP 495
Score = 81.6 bits (200), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/125 (36%), Positives = 68/125 (54%), Gaps = 8/125 (6%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRK--LCADSDAKSK 72
+E ECC+ E + + +VISAFD+P+F Y+ + KK+ D L D KS+
Sbjct: 67 VERAAKECCQNEFDETTVLLNVISAFDVPKFVYNTERKKYLSFDAPHSINLFGDPRDKSE 126
Query: 73 LFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMIS 126
+FR RY I+ QRT RHSLF + + + +L +EYL+ ++ VVLGM++
Sbjct: 127 MFRHRYAILHQRTSRHSLFTPSVLGSGSTASQNKYQLQPIEYLLGMSTKLTNLVVLGMLT 186
Query: 127 QLKEN 131
L E
Sbjct: 187 YLTEG 191
>gi|196008689|ref|XP_002114210.1| hypothetical protein TRIADDRAFT_27613 [Trichoplax adhaerens]
gi|190583229|gb|EDV23300.1| hypothetical protein TRIADDRAFT_27613 [Trichoplax adhaerens]
Length = 527
Score = 300 bits (767), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 171/444 (38%), Positives = 254/444 (57%), Gaps = 32/444 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
EC + + + +IF+VI+ F P++ Y+ + KKF + + K+ FRERYN+
Sbjct: 75 ECQQNSHDEQSKIFNVINIFKTPKYYYNTEKKKFLRGNDDTNTFGLAKDKAAYFRERYNL 134
Query: 287 IRQRTLRHSLF---NNINPNADSVK------LDWVEYLMSLTNVNHKTVVLGMISQLKEN 337
I QRT+RH LF + N N D + L +EYL+S + + K VVLGMI++ +E
Sbjct: 135 IYQRTIRHDLFCPSSTGNKNIDKYRQQQQFELKSIEYLLSTSRIEDKIVVLGMITRHREG 194
Query: 338 RYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRL 397
+ LED TGIV+LD+S+T +H GL+TE C VL EG Y+D + A+GFPP E +K+
Sbjct: 195 GFALEDITGIVKLDISKTLFHAGLFTEACFVLAEGVYEDDVFRASAIGFPPAEPAKSFYR 254
Query: 398 YFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQ 457
+FG+ N++GGP S K + +E++N M++ LSDV LD V + L + F
Sbjct: 255 HFGDINLFGGPFTRSFKFSINLKAVEEHNSGTMLIFLSDVWLDQSSVLDKL----RTLFA 310
Query: 458 GFVPNSTMA----TNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGE 513
G+ MA N Y +E +++ E L + +FP + S
Sbjct: 311 GYSNAPPMAFILIGNYLSTPYGYKESKIMK-ECLQTLADLICEFPNIKERSH-------- 361
Query: 514 KDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
F+ VP I+ G + + P LP+ +T++ + +P A+NPCR+QYC+Q+I++
Sbjct: 362 ----FVFVPSIHDVG-FGNILPRPPLPESVTADIRERLPWVDFASNPCRIQYCTQDIVIF 416
Query: 574 REELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
RE+++ K+CRNCI PE+G DI HFVRT+ SQGTL LPLN+ PVYW+ ALSLYP P
Sbjct: 417 REDMIGKVCRNCIHIPEDGEDIPSHFVRTITSQGTLCPLPLNVSPVYWNYSYALSLYPSP 476
Query: 633 DLVILGDQLNAYTIQNTDCIFINP 656
DLV+L + + I +FINP
Sbjct: 477 DLVVLANNYEPFEISRIGSLFINP 500
Score = 76.6 bits (187), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 69/126 (54%), Gaps = 9/126 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLF 74
+E EC + + + +IF+VI+ F P++ Y+ + KKF + + K+ F
Sbjct: 69 VESAIQECQQNSHDEQSKIFNVINIFKTPKYYYNTEKKKFLRGNDDTNTFGLAKDKAAYF 128
Query: 75 RERYNIIRQRTLRHSLF---NNINPNADSVK------LDWVEYLMSLTNVNHKTVVLGMI 125
RERYN+I QRT+RH LF + N N D + L +EYL+S + + K VVLGMI
Sbjct: 129 RERYNLIYQRTIRHDLFCPSSTGNKNIDKYRQQQQFELKSIEYLLSTSRIEDKIVVLGMI 188
Query: 126 SQLKEN 131
++ +E
Sbjct: 189 TRHREG 194
>gi|449677395|ref|XP_002157494.2| PREDICTED: DNA polymerase epsilon subunit 2-like [Hydra
magnipapillata]
Length = 504
Score = 298 bits (764), Expect = 5e-78, Method: Compositional matrix adjust.
Identities = 165/420 (39%), Positives = 251/420 (59%), Gaps = 26/420 (6%)
Query: 248 IPQFDYDPDLKKFKLVDKKRKLCAD--SDAKSKLFRERYNIIRQRTLRHSLFN----NIN 301
+P + Y+ + KKF ++D RK C + +D K+ +F ERY ++ QRT+ H LF +
Sbjct: 73 VPHYTYNVERKKF-MLDSNRKPCLNGLADDKANMFVERYTLLYQRTMHHELFTPSAFAAS 131
Query: 302 PNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP 359
N S K L VE+L+ + +V GM+++LKE++YFLEDP+G+V+LDLS+T +H
Sbjct: 132 SNVKSAKFTLKPVEHLLGCSGNLGDIIVFGMLTRLKEDKYFLEDPSGVVELDLSKTVFHT 191
Query: 360 GLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRM 419
GLYTENC VL EG Y DQ+ HV ALGFPP E + +R +FGN N +GGPS V + S ++
Sbjct: 192 GLYTENCFVLAEGSYDDQVFHVSALGFPPLEKAATTRSFFGNINFFGGPSSVCVASSEKL 251
Query: 420 TKMEKN--NENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQ 477
++E++ N+N M V +SD+ LDN KV +N + + S + P + QYC
Sbjct: 252 KQLEQDDVNQNNMFVFISDLWLDNPKVISNF-KTLLSGYASMPPALFVICGNFLSQYCGT 310
Query: 478 EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSP 537
+ L+ ++ ++ + +F E + S+ V F+ P+ + + P
Sbjct: 311 KQLMQLKQGFDELAQLISEFDEILESSRFV----------FVPGPQDLGPANILPR---P 357
Query: 538 ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE-GDISK 596
L K I+ + + VP + +NPCR+QYCSQEI++ RE++++KMCRN I P + DI
Sbjct: 358 PLSKMISEKLKEKVPFAYFLSNPCRIQYCSQEIVIYREDIVNKMCRNSIHLPTDLQDIPS 417
Query: 597 HFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
HF +TL+SQ L LPL++ P+YWS AL LYPLPD+V+ D+ Y + +D IF+NP
Sbjct: 418 HFAKTLLSQSHLCPLPLHIRPIYWSFDNALRLYPLPDVVVCADKYEGYNVNISDTIFMNP 477
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 34/98 (34%), Positives = 56/98 (57%), Gaps = 9/98 (9%)
Query: 42 IPQFDYDPDLKKFKLVDKKRKLCAD--SDAKSKLFRERYNIIRQRTLRHSLFN----NIN 95
+P + Y+ + KKF ++D RK C + +D K+ +F ERY ++ QRT+ H LF +
Sbjct: 73 VPHYTYNVERKKF-MLDSNRKPCLNGLADDKANMFVERYTLLYQRTMHHELFTPSAFAAS 131
Query: 96 PNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
N S K L VE+L+ + +V GM+++LKE+
Sbjct: 132 SNVKSAKFTLKPVEHLLGCSGNLGDIIVFGMLTRLKED 169
>gi|355778563|gb|EHH63599.1| hypothetical protein EGM_16600, partial [Macaca fascicularis]
Length = 473
Score = 295 bits (756), Expect = 4e-77, Method: Compositional matrix adjust.
Identities = 169/443 (38%), Positives = 249/443 (56%), Gaps = 54/443 (12%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV---DKKRKLCADSDAKSKLFRER 283
EC ++ + E +F++I AFDIP+F Y+ + KKF L+ L + K++LFRER
Sbjct: 50 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLLLMTNHPAPNLFGTARDKAELFRER 109
Query: 284 YNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 337
Y I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 110 YTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKEG 169
Query: 338 RYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRL 397
++FLEDPTG VQLDLS+ +H GLYTE C VL EG R
Sbjct: 170 KFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEG-----------------------RA 206
Query: 398 YFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQ 457
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V L F
Sbjct: 207 YYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEVLEKL----RIMFA 262
Query: 458 GFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGE 513
G+ P + N Y ++ +++ L + C ++P+ S+ V E
Sbjct: 263 GYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGPE 321
Query: 514 KDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 322 DPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIVF 368
Query: 574 REELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
RE+L++KMCRNC++FP +FV+T++SQG L LPL +CPVYW+ AL +YP+PD
Sbjct: 369 REDLVNKMCRNCVRFPSSNLAIPNFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPD 428
Query: 634 LVILGDQLNAYTIQNTDCIFINP 656
L+++ D+ + +TI NT+C+ INP
Sbjct: 429 LLVIADKYDPFTITNTECLCINP 451
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/127 (36%), Positives = 71/127 (55%), Gaps = 9/127 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV---DKKRKLCADSDAK 70
++E EC ++ + E +F++I AFDIP+F Y+ + KKF L+ L + K
Sbjct: 43 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLLLMTNHPAPNLFGTARDK 102
Query: 71 SKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY I+ QRT RH LF ++ + + +L +E L+ T +VLGM
Sbjct: 103 AELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGM 162
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 163 ITQLKEG 169
>gi|312383313|gb|EFR28452.1| hypothetical protein AND_03592 [Anopheles darlingi]
Length = 524
Score = 295 bits (756), Expect = 5e-77, Method: Compositional matrix adjust.
Identities = 164/452 (36%), Positives = 249/452 (55%), Gaps = 29/452 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF--KLVDKKRKLCADSDAKSKLFRERY 284
E T ++ E +F VISAF++P F Y + KKF K +L DAKS RERY
Sbjct: 74 EASNTGLDDAETVFQVISAFEVPSFVYVEEKKKFLPAPTSTKLQLLGPPDAKSNYLRERY 133
Query: 285 NIIRQRTLRHSLFNN-------INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 337
++ Q+T RH +F+ + L VE L+S + +N V+LG+++QL E
Sbjct: 134 LMLWQKTHRHEMFSQRSTPGTITGTGKSKLTLRKVENLLSTSKMND-VVMLGLLTQLTEG 192
Query: 338 RYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRL 397
R++LEDPTG V +DLS T++ GL+ E C VL G ++D L ++ +GFPPPE + +SR
Sbjct: 193 RFYLEDPTGSVPIDLSTTAFSAGLFCEGCFVLACGKFRDGTLKIEEIGFPPPELAASSRA 252
Query: 398 YFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQ 457
+FG+ N WGGPS LK+ + ++EK N + ++ +SD LD+ +V L + + +
Sbjct: 253 FFGSVNSWGGPSKTLLKNSRNLAELEKGNPDHSLIFVSDCWLDSAEVMEKLKQLLKG-YD 311
Query: 458 GFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII 517
F P + + P Q + L R ++L ++ C K + D+
Sbjct: 312 DFPPVAIVLMGPFGKQQDNVYGLKNRFQMLGELLSTCEKLKAQTDL-------------- 357
Query: 518 FLIVPKIYVEGTVTSKVL-SPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
++VP + + +L P +P I E P + +ATNPCR+QYC+Q+I+V R +
Sbjct: 358 -VLVPS--CDDPAAANILPRPPIPNAIAGELVKRYPRTILATNPCRLQYCTQQIVVCRAD 414
Query: 577 LLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI 636
L++K+CRN I FP++G + +HF RTL+SQGTL L P +WS ALSLYPLPDLV+
Sbjct: 415 LVTKLCRNTIHFPKQGHLEEHFARTLISQGTLAPLHPIAFPTHWSYDAALSLYPLPDLVV 474
Query: 637 LGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
+GD A+ DC +N + AF+V
Sbjct: 475 IGDPCQAFQTTEQDCTVMNVGSFPKSKFAFKV 506
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 44/126 (34%), Positives = 64/126 (50%), Gaps = 10/126 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF--KLVDKKRKLCADSDAKSK 72
IE E T ++ E +F VISAF++P F Y + KKF K +L DAKS
Sbjct: 68 IEQAIKEASNTGLDDAETVFQVISAFEVPSFVYVEEKKKFLPAPTSTKLQLLGPPDAKSN 127
Query: 73 LFRERYNIIRQRTLRHSLFNN-------INPNADSVKLDWVEYLMSLTNVNHKTVVLGMI 125
RERY ++ Q+T RH +F+ + L VE L+S + +N V+LG++
Sbjct: 128 YLRERYLMLWQKTHRHEMFSQRSTPGTITGTGKSKLTLRKVENLLSTSKMND-VVMLGLL 186
Query: 126 SQLKEN 131
+QL E
Sbjct: 187 TQLTEG 192
>gi|157132083|ref|XP_001662454.1| DNA polymerase epsilon subunit b [Aedes aegypti]
gi|108881739|gb|EAT45964.1| AAEL002785-PA [Aedes aegypti]
Length = 516
Score = 291 bits (744), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 158/434 (36%), Positives = 239/434 (55%), Gaps = 24/434 (5%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
E T + E IFSVI+AFD+P+F + + K F KR D K++ RERY +
Sbjct: 74 EANNTGLEDNETIFSVINAFDVPRFHFHEEKKMFMPDSGKRGFFPGPDTKAEYIRERYLM 133
Query: 287 IRQRTLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLE 342
+ Q+T RH +FN + + + L +E L+S + + + VVLG+++QL E +++LE
Sbjct: 134 LWQKTCRHEMFNTSKVSTYKDIKRLTLRKIELLLSTSKMK-EVVVLGLLTQLTEGKFYLE 192
Query: 343 DPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQ 402
DPTG+V +DL +T Y GL+ E C VL G Y D L +D LGFP E + +SR +FG
Sbjct: 193 DPTGVVPIDLRETVYSSGLFCEGCFVLASGTYSDGTLKIDELGFPVTELASSSRAFFGTV 252
Query: 403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN 462
N WGG S LK + ++E+N+ IV L+D LDN V L + + + F P
Sbjct: 253 NTWGGRSKSLLKYSRNLAELERNSGEDSIVFLADCWLDNPIVLQKLTQLLDG-YNQFPPR 311
Query: 463 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP 522
+ + P + L R + L + + +E D+ ++VP
Sbjct: 312 AIVLMGPFSKSTENPYALKERFQALGETLGSYESLKKETDV---------------VLVP 356
Query: 523 KIYVEGTVTSKVL-SPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM 581
E T+ +L P LP+++T + + P +ATNPCR+QYC+Q+I+V R +L++K+
Sbjct: 357 S--SEDPTTANILPRPPLPEYLTGDLKKSYPRLVLATNPCRLQYCTQQIVVCRSDLVTKL 414
Query: 582 CRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQL 641
CRN I FP+ G ++ HF RTL+SQGTL L CPV+W+ ALSLYPLPDL+++GD
Sbjct: 415 CRNTIHFPKSGQLADHFARTLISQGTLAPLNPIACPVHWNYDAALSLYPLPDLIVIGDTS 474
Query: 642 NAYTIQNTDCIFIN 655
+ +C +N
Sbjct: 475 QGFQTTEQECTVLN 488
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 44/130 (33%), Positives = 68/130 (52%), Gaps = 5/130 (3%)
Query: 6 DNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA 65
D P+ IE E T + E IFSVI+AFD+P+F + + K F KR
Sbjct: 59 DLPAVEKSHIELAIKEANNTGLEDNETIFSVINAFDVPRFHFHEEKKMFMPDSGKRGFFP 118
Query: 66 DSDAKSKLFRERYNIIRQRTLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVV 121
D K++ RERY ++ Q+T RH +FN + + + L +E L+S + + + VV
Sbjct: 119 GPDTKAEYIRERYLMLWQKTCRHEMFNTSKVSTYKDIKRLTLRKIELLLSTSKMK-EVVV 177
Query: 122 LGMISQLKEN 131
LG+++QL E
Sbjct: 178 LGLLTQLTEG 187
>gi|47229998|emb|CAG10412.1| unnamed protein product [Tetraodon nigroviridis]
Length = 560
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 160/429 (37%), Positives = 241/429 (56%), Gaps = 56/429 (13%)
Query: 269 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 322
LC + K++LFRERY I++QR RH LF + + +L +E L+ T
Sbjct: 119 LCGLAKDKAELFRERYTILQQRIHRHELFTPPAIGTGVEEGENKFQLKTIEALLGSTAKM 178
Query: 323 HKTVVLGMISQLKE-----------------------------NRYFLEDPTGIVQLDLS 353
+ +VLGMI+QLKE +++LEDP+G VQLD+S
Sbjct: 179 GEVIVLGMITQLKEVSSSERQDGNDTLVCVTFSFLNYFFISFKGKFYLEDPSGTVQLDMS 238
Query: 354 QT----SYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPS 409
+ +H GLYT++C VL EG Y+D + HV+ GFPP E S +R Y+GN N +GGPS
Sbjct: 239 KAIRLHQFHNGLYTDSCFVLAEGWYEDSVFHVNGFGFPPTEPSSATRAYYGNMNFFGGPS 298
Query: 410 PVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNS-TMATN 468
S+K+ ++ ++E+ NE+AM VI+SDV LD+ +V L + S + P N
Sbjct: 299 STSVKASAKLKQLEEENEDAMFVIISDVWLDDVEVLEKL-NLMLSGYSSMPPTCFIFIGN 357
Query: 469 PCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEG 528
R Y + +I +++ L + C H + +N + +F+ P+ G
Sbjct: 358 FSRAPYGNTQIKSLKDSLRALADIIC----------AHPNIHNSSR-FLFVPGPEDPGPG 406
Query: 529 TVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF 588
T+ + P L IT EF+ VP S TNPCRVQYCSQEI++ RE+L++KMCRNC++
Sbjct: 407 TILPR---PPLANHITEEFRQRVPFSVFTTNPCRVQYCSQEIIIFREDLVNKMCRNCVRL 463
Query: 589 PEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQ 647
P + DI HFV+T++SQG L LPL + PVYW+ +L +YP+PD+++ D+ + ++I
Sbjct: 464 PNDNLDIPNHFVKTVLSQGHLTPLPLYVSPVYWAYDYSLRVYPIPDVIVFADKYDPFSIT 523
Query: 648 NTDCIFINP 656
+TDC+ INP
Sbjct: 524 STDCLCINP 532
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/74 (39%), Positives = 42/74 (56%), Gaps = 6/74 (8%)
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVN 116
LC + K++LFRERY I++QR RH LF + + +L +E L+ T
Sbjct: 119 LCGLAKDKAELFRERYTILQQRIHRHELFTPPAIGTGVEEGENKFQLKTIEALLGSTAKM 178
Query: 117 HKTVVLGMISQLKE 130
+ +VLGMI+QLKE
Sbjct: 179 GEVIVLGMITQLKE 192
>gi|297695039|ref|XP_002824764.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit 2
[Pongo abelii]
Length = 534
Score = 288 bits (738), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 169/450 (37%), Positives = 255/450 (56%), Gaps = 36/450 (8%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQ-NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSE 455
Y+G N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E +
Sbjct: 253 AYYGKYFNFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIM 308
Query: 456 FQGFVPNST-----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKN 510
F G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 FAGYSPAPPTSCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVP 367
Query: 511 NGEK-DIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQ-GFVPNSTMATNPCRVQYC-S 567
E I F I+P+ +P K T Q VP S TNPCR+Q +
Sbjct: 368 GPEDPGIWFPILPRA-----------APPCXKASTKXIQTKGVPFSVFTTNPCRIQVLYT 416
Query: 568 QEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGAL 626
++L RE+L++K NC++FP I HFV+T++SQG L LPL +CPVYW+ AL
Sbjct: 417 GKLLSFREDLVNKCAENCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYAL 476
Query: 627 SLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+YP+PDL+++ D+ + + + NT+C+ INP
Sbjct: 477 RVYPVPDLLVIADKYDPFIMTNTECLCINP 506
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>gi|347972280|ref|XP_315206.3| AGAP004614-PA [Anopheles gambiae str. PEST]
gi|333469325|gb|EAA10562.3| AGAP004614-PA [Anopheles gambiae str. PEST]
Length = 521
Score = 286 bits (731), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 163/450 (36%), Positives = 243/450 (54%), Gaps = 27/450 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
E T ++ E IF VISAF++P F Y + KKF KR L A D KS RERY +
Sbjct: 74 EANNTGLDDTETIFRVISAFEVPSFVYCAEKKKFLPDTNKRSLLATPDGKSSYIRERYWL 133
Query: 287 IRQRTLRHSLFNN-INP------NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRY 339
+ Q+T RH F+ P N + + L VE ++S + +N V+LG+++QL E RY
Sbjct: 134 LWQKTSRHETFSQRTTPGMEAPGNRNKLSLRKVENILSTSKMND-VVLLGLLTQLTEGRY 192
Query: 340 FLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYF 399
+LEDPTG + +D+S +Y PGL+ E C +L G Y+D +L V+ +GFP PE + NSR +F
Sbjct: 193 YLEDPTGSIPIDISTATYSPGLFCEGCFLLAYGKYRDGVLKVEEIGFPMPELATNSRAFF 252
Query: 400 GNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGF 459
G N WGGPS LK + +EK N +V LSD LDN V L + + + F
Sbjct: 253 GTVNSWGGPSKTLLKYSRNLNDLEKANVEHSLVFLSDCWLDNPIVMEKLEQLLRG-YDDF 311
Query: 460 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL 519
P + + P + L L ++ +C K + D+ +
Sbjct: 312 PPVAIVLMGPFARSIENVYTLKGHFVKLGEILSSCEKLKSQTDL---------------V 356
Query: 520 IVPKIYVEGTVTSKVL-SPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 578
IVP I + + +L P +P+ + E + P + + TNPCR+QYC+Q+I+V R +L+
Sbjct: 357 IVPSI--DDPAAANILPRPPVPEALAGELKKRFPRTILTTNPCRLQYCTQQIVVCRADLV 414
Query: 579 SKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILG 638
+K+CRN I FP+EG + +HF RT+++Q TL L P +W+ ALSLYPLPDL+++G
Sbjct: 415 TKLCRNTIHFPKEGLLEEHFARTIINQNTLAPLTPIAFPTHWNYDAALSLYPLPDLIVIG 474
Query: 639 DQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
D + +C +N + AF+V
Sbjct: 475 DPCQGFHTTEQECTVMNVGSFPKSKYAFKV 504
Score = 73.6 bits (179), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 47/124 (37%), Positives = 66/124 (53%), Gaps = 8/124 (6%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLF 74
IE E T ++ E IF VISAF++P F Y + KKF KR L A D KS
Sbjct: 68 IELAIKEANNTGLDDTETIFRVISAFEVPSFVYCAEKKKFLPDTNKRSLLATPDGKSSYI 127
Query: 75 RERYNIIRQRTLRHSLFNN-INP------NADSVKLDWVEYLMSLTNVNHKTVVLGMISQ 127
RERY ++ Q+T RH F+ P N + + L VE ++S + +N V+LG+++Q
Sbjct: 128 RERYWLLWQKTSRHETFSQRTTPGMEAPGNRNKLSLRKVENILSTSKMN-DVVLLGLLTQ 186
Query: 128 LKEN 131
L E
Sbjct: 187 LTEG 190
>gi|391348105|ref|XP_003748292.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Metaseiulus
occidentalis]
Length = 535
Score = 284 bits (727), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 167/449 (37%), Positives = 250/449 (55%), Gaps = 30/449 (6%)
Query: 222 LKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFR 281
+K EC + Q+F VISAF++P F Y+ D KKF V+ KR L D+DAK+ L++
Sbjct: 74 VKCIKECSSLPDEQQHQVFKVISAFEVPAFTYNNDRKKFLKVETKRILFPDADAKADLYQ 133
Query: 282 ERYNIIRQRTLRHSLFNNINPNADSV---------KLDWVEYLMSLTNVNHK-TVVLGMI 331
ERY ++ QRTLRH LF P+A S+ KL E LM + ++K VVLGMI
Sbjct: 134 ERYKVVHQRTLRHRLF--APPSAASLLSSTQAEHYKLCTCESLMGMAKTDNKFVVVLGMI 191
Query: 332 SQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEA 391
+QLKE + LEDPTG V L+LS+ ++ L TE IVL EG Y D+I +V A+GF P EA
Sbjct: 192 TQLKEGKLSLEDPTGCVSLNLSKANFPEALITEGSIVLAEGTYDDKIFNVQAIGFAPAEA 251
Query: 392 SKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEF 451
+ SR +FG+ N +GG S +K+ + +ME+ +++MIV LSDV LD+ + L
Sbjct: 252 ASISREFFGSVNYFGGDSLKCMKTDAAVREMEQQLDDSMIVFLSDVWLDDVRTMERLKIL 311
Query: 452 ITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN 511
Q M N R +I+ ++ + ++ ++FP + S+ +
Sbjct: 312 FEGYNQCPPLAFVMMGNFLRDSLGFADIVTLK-DCFKQLADLILQFPAVVERSRFIFVPG 370
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
++ I+P+ P LP IT F +P + +NP R+Q SQEI+
Sbjct: 371 SRDPLVSKILPR-------------PPLPTAITEAFSSKLPKTVFTSNPARIQLYSQEIV 417
Query: 572 VVREELLSKMCRNCIKFPEEGD----ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALS 627
+ RE+++SKMCRN I P + D +++ +V+ LV L LP++L P+YW +
Sbjct: 418 LFREDVVSKMCRNSIYVPWDTDSDVAMAQLYVKNLVGNSHLCCLPIHLAPIYWQMDHSFW 477
Query: 628 LYPLPDLVILGDQLNAYTIQNTDCIFINP 656
LYP+PDLV+ GD+ A+T++ DC+F NP
Sbjct: 478 LYPMPDLVVCGDKHEAFTVKQNDCVFTNP 506
Score = 98.2 bits (243), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/131 (45%), Positives = 77/131 (58%), Gaps = 12/131 (9%)
Query: 11 TYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAK 70
T DLI EC + Q+F VISAF++P F Y+ D KKF V+ KR L D+DAK
Sbjct: 69 TKDLIVKCIKECSSLPDEQQHQVFKVISAFEVPAFTYNNDRKKFLKVETKRILFPDADAK 128
Query: 71 SKLFRERYNIIRQRTLRHSLFNNINPNADSV---------KLDWVEYLMSLTNVNHK-TV 120
+ L++ERY ++ QRTLRH LF P+A S+ KL E LM + ++K V
Sbjct: 129 ADLYQERYKVVHQRTLRHRLF--APPSAASLLSSTQAEHYKLCTCESLMGMAKTDNKFVV 186
Query: 121 VLGMISQLKEN 131
VLGMI+QLKE
Sbjct: 187 VLGMITQLKEG 197
>gi|195376835|ref|XP_002047198.1| GJ13306 [Drosophila virilis]
gi|194154356|gb|EDW69540.1| GJ13306 [Drosophila virilis]
Length = 526
Score = 281 bits (719), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 160/456 (35%), Positives = 245/456 (53%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E IFS+I AF +P++ Y+ +KKF+L + R+L KS ++
Sbjct: 70 KAINELNRVGLDEGETIFSLIDAFTVPRYRYNTRIKKFELDTQPRRLLTQPRMKSDYLQQ 129
Query: 283 RYNIIRQRTLRHSLF------NNINPNADS--VKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF + + A S KL + E L++ +++ + VVLG+++QL
Sbjct: 130 RYAMLLQKTLRHDLFAPAVIQDGVAAAAQSKKFKLQYAENLLATSHLK-EAVVLGLLTQL 188
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++F+EDPTG V+LDLS +H G + E C VL EG Y + +L VD LGFPP E + +
Sbjct: 189 KEGKFFVEDPTGCVELDLSGARFHAGFFCEGCFVLAEGSYANGVLKVDGLGFPPAEQATS 248
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK R+ ++E+ N +V LSDV LD V + L +
Sbjct: 249 SRAFFGTGNTWGGESTKLLKYSPRLQEVERTNTETTLVFLSDVRLDLPVVMDKLRQLFVG 308
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 309 -YDSCPPQAIVLMGPFTASTRNHHELRQHLDALGALAAGCEQLKKQTDL----------- 356
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A LP+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 357 ----ILVPS--AEDPTAPNILPRAPLPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 410
Query: 574 REELLSKMCRNCIKFPEEGD-ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FP + I +HF RTLV QG LV + PV+W AL LYPLP
Sbjct: 411 RLDLMAKFCRNTLHFPPDTTHIEQHFARTLVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 470
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD ++ DC +N + AF+V
Sbjct: 471 DLIVMGDSCQSFASTQHDCTVLNTGSFVKSKFAFKV 506
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 75/133 (56%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P + +E NE R ++ E IFS+I AF +P++ Y+ +KKF+L + R+L
Sbjct: 60 TPHVEREALEKAINELNRVGLDEGETIFSLIDAFTVPRYRYNTRIKKFELDTQPRRLLTQ 119
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADS--VKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF + + A S KL + E L++ +++ +
Sbjct: 120 PRMKSDYLQQRYAMLLQKTLRHDLFAPAVIQDGVAAAAQSKKFKLQYAENLLATSHLK-E 178
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 179 AVVLGLLTQLKEG 191
>gi|195492108|ref|XP_002093848.1| GE20528 [Drosophila yakuba]
gi|194179949|gb|EDW93560.1| GE20528 [Drosophila yakuba]
Length = 525
Score = 281 bits (718), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 242/456 (53%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y+ +KKF+L + R+L KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRFRYNQRVKKFELDTQPRQLLTAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ T+ + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSTMREAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDL+ +H G + E C VL EGHY + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGHYNNGVLKVDGLGFPPAEPASS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK + ++E+ N IV LSDV LD V + L +
Sbjct: 250 SRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMDKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 507
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P+F Y+ +KKF+L + R+L
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRVKKFELDTQPRQLLTA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSTMRE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|195127219|ref|XP_002008066.1| GI12037 [Drosophila mojavensis]
gi|193919675|gb|EDW18542.1| GI12037 [Drosophila mojavensis]
Length = 526
Score = 280 bits (715), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 163/456 (35%), Positives = 248/456 (54%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E IFS+I AF +P++ Y+ +KKF+L + R L KS ++
Sbjct: 70 KAINELNRVGLDEGETIFSLIDAFTVPRYRYNTRIKKFELDSRPRCLLPQPRMKSDYMQQ 129
Query: 283 RYNIIRQRTLRHSLF------NNINPNADS--VKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF + + +A + KL + E L++ +++ + VVLG+++QL
Sbjct: 130 RYAMLLQKTLRHDLFAPAVIQDGVAADAQTKKFKLQYAENLLATSSLK-EAVVLGLLTQL 188
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDLS +H G + E C VL EG Y + +L VD LGFPP E + +
Sbjct: 189 KEGKFYVEDPTGCVQLDLSGARFHAGFFCEGCFVLAEGSYANGVLKVDGLGFPPAEPATS 248
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG + LK R+ ++E+ N IV LSDV LD V L +
Sbjct: 249 SRAFFGTGNSWGGEAAKLLKYSPRLQELERTNTETTIVFLSDVRLDLPIVMEKLRQLFVG 308
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C +H+ K +
Sbjct: 309 -YDSCPPQAIVLMGPFTAGTRNHHELRQHLDALGALAAGC----------EHLKK---QT 354
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
D+I +VP VE +L A LP+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 355 DLI--LVPS--VEDPTAPNILPRAPLPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 410
Query: 574 REELLSKMCRNCIKFPEEGD-ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FP + I +HF RTLV QG LV + PV+W AL LYPLP
Sbjct: 411 RLDLMAKFCRNTLHFPPDTTHIEQHFARTLVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 470
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ DC +N + AF+V
Sbjct: 471 DLIVMGDSCQSFSSTQHDCTVLNTGSFVKSKFAFKV 506
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 75/133 (56%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P + +E NE R ++ E IFS+I AF +P++ Y+ +KKF+L + R L
Sbjct: 60 TPHVEREALEKAINELNRVGLDEGETIFSLIDAFTVPRYRYNTRIKKFELDSRPRCLLPQ 119
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADS--VKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF + + +A + KL + E L++ +++ +
Sbjct: 120 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVAADAQTKKFKLQYAENLLATSSLK-E 178
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 179 AVVLGLLTQLKEG 191
>gi|291403818|ref|XP_002718342.1| PREDICTED: DNA-directed DNA polymerase epsilon 2 [Oryctolagus
cuniculus]
Length = 474
Score = 279 bits (714), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 160/439 (36%), Positives = 234/439 (53%), Gaps = 74/439 (16%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSKSVDETIEHIFNIIGAFDIPRFVYNTERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLE 342
RY I+ Q ++FLE
Sbjct: 133 RYIILHQ-----------------------------------------------GKFFLE 145
Query: 343 DPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQ 402
DPTG VQLDL++ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R Y+GN
Sbjct: 146 DPTGTVQLDLTKAQFHSGLYTETCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTRAYYGNI 205
Query: 403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN 462
N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V E + + F G+ P
Sbjct: 206 NFFGGPSSTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LEKLHTMFSGYSPA 261
Query: 463 ST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
+ N Y ++ +++ L + C ++P S+ V E
Sbjct: 262 PPTCFILCGNFSSAPYGKNQVQALKDALKTLADIIC-EYPNIHQSSRFVFVPGPEDPGFG 320
Query: 519 LIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 578
I+P+ P L IT+EF+ VP S TNPCR+QYC+QEI+V RE+L+
Sbjct: 321 SILPR-------------PPLADSITNEFRQRVPFSVFTTNPCRIQYCTQEIIVFREDLV 367
Query: 579 SKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVIL 637
+KMCRNC++FP DI HFV+TL+SQG L LPL + PVYW+ L +YP+PDL+++
Sbjct: 368 NKMCRNCVRFPSSNLDIPNHFVKTLLSQGHLTPLPLYVSPVYWAYDYTLRVYPVPDLLVI 427
Query: 638 GDQLNAYTIQNTDCIFINP 656
D+ + +T+ NT C+ INP
Sbjct: 428 ADKYDPFTVTNTGCLCINP 446
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 4/74 (5%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E IF++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVETAVQECSKSVDETIEHIFNIIGAFDIPRFVYNTERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQ 83
K++LFRERY I+ Q
Sbjct: 126 KAELFRERYIILHQ 139
>gi|194750160|ref|XP_001957498.1| GF10439 [Drosophila ananassae]
gi|190624780|gb|EDV40304.1| GF10439 [Drosophila ananassae]
Length = 525
Score = 279 bits (713), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 242/456 (53%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P++ Y+ +KKF+L + R+L KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRYRYNNRVKKFELDTQPRQLLTAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ T+ + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDLS +H G + E C VL EG Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGCVQLDLSGARFHAGFFCEGCFVLAEGKYSNGVLKVDGLGFPPAEPATS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK R+ ++E+ N IV LSDV LD V + L +
Sbjct: 250 SRAFFGTANTWGGESAKLLKYSPRLQELERTNTETTIVFLSDVRLDLPVVMDKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTAQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 507
Score = 76.3 bits (186), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P++ Y+ +KKF+L + R+L
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRYRYNNRVKKFELDTQPRQLLTA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|195337751|ref|XP_002035489.1| GM13889 [Drosophila sechellia]
gi|194128582|gb|EDW50625.1| GM13889 [Drosophila sechellia]
Length = 525
Score = 278 bits (712), Expect = 6e-72, Method: Compositional matrix adjust.
Identities = 157/456 (34%), Positives = 243/456 (53%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y+ +KKF+L + R+L KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ T+V + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSVMKEAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDL+ +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPATS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK + ++E+ N IV LSDV LD V + L +
Sbjct: 250 SRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPIVMDKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNYHELRQHLDALGGLAAGCEQLKKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPITMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 507
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P+F Y+ +KKF+L + R+L
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ T+V +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSVMKE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|195588062|ref|XP_002083777.1| GD13171 [Drosophila simulans]
gi|194195786|gb|EDX09362.1| GD13171 [Drosophila simulans]
Length = 525
Score = 278 bits (710), Expect = 9e-72, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 242/456 (53%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y+ +KKF+L + R+L KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ T+ + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDL+ +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPATS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK + ++E+ N IV LSDV LD V + L +
Sbjct: 250 SRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMDKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 507
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P+F Y+ +KKF+L + R+L
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|170045263|ref|XP_001850235.1| DNA polymerase epsilon subunit 2 [Culex quinquefasciatus]
gi|167868222|gb|EDS31605.1| DNA polymerase epsilon subunit 2 [Culex quinquefasciatus]
Length = 520
Score = 278 bits (710), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 162/449 (36%), Positives = 246/449 (54%), Gaps = 25/449 (5%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDK--KRKLCADSDAKSKLFRERY 284
E T + E +FSVI+AFD+P+F Y + +KF V KR L D K++ R+RY
Sbjct: 74 EASNTGLEDNESVFSVINAFDVPKFRYCEEKRKFLPVSGGPKRDLLPGPDMKAEYIRDRY 133
Query: 285 NIIRQRTLRHSLFNNINPN--ADSVK---LDWVEYLMSLTNVNHKTVVLGMISQLKENRY 339
++ Q+T RH +FN +SVK L +E L++ + +N + V+LG+++QL E ++
Sbjct: 134 MMLWQKTSRHEMFNASKDGMVGNSVKRLTLRKIETLLATSKMN-EVVILGLLTQLTEGKF 192
Query: 340 FLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYF 399
+LEDPTG+V +DLS+T + GL+ E C VL G ++D L V+ +GFP E + +SR YF
Sbjct: 193 YLEDPTGVVPIDLSETVFSSGLFCEGCFVLACGKFRDGTLKVEEMGFPVSELASSSRAYF 252
Query: 400 GNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGF 459
G N WGG S LK+ + ++EK N IV LSD LDN V + L + + F
Sbjct: 253 GTMNTWGGRSRTLLKASRNLAELEKTNREDSIVFLSDCWLDNPVVLDKLKLLLQG-YNEF 311
Query: 460 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL 519
P + + P L R L ++ C + +I +
Sbjct: 312 PPIAIVLMGPFSKMTEDPYSLKGRFAALGEILAGCEGLKMQTEI---------------V 356
Query: 520 IVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLS 579
+VP + T + + P LP + ++ + P T+ATNPCR+QYC+Q+I+V R +L++
Sbjct: 357 LVPSCD-DPTAANILPRPPLPDCLVTDLKKRYPRITLATNPCRLQYCTQQIVVFRMDLVT 415
Query: 580 KMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
K+CRN I FP+ G + HF RTL+SQGTL L PV+W+ ALSLYPLPDL+++GD
Sbjct: 416 KLCRNTIHFPKSGQLEDHFARTLISQGTLAPLHPIALPVHWNFDAALSLYPLPDLIVVGD 475
Query: 640 QLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
+ + +C +N + AF+V
Sbjct: 476 PSQGFQVTEQECTVLNTGSFPKSKFAFKV 504
Score = 73.9 bits (180), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/124 (36%), Positives = 70/124 (56%), Gaps = 8/124 (6%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDK--KRKLCADSDAKSK 72
IE E T + E +FSVI+AFD+P+F Y + +KF V KR L D K++
Sbjct: 68 IELAIKEASNTGLEDNESVFSVINAFDVPKFRYCEEKRKFLPVSGGPKRDLLPGPDMKAE 127
Query: 73 LFRERYNIIRQRTLRHSLFNNINPN--ADSVK---LDWVEYLMSLTNVNHKTVVLGMISQ 127
R+RY ++ Q+T RH +FN +SVK L +E L++ + +N + V+LG+++Q
Sbjct: 128 YIRDRYMMLWQKTSRHEMFNASKDGMVGNSVKRLTLRKIETLLATSKMN-EVVILGLLTQ 186
Query: 128 LKEN 131
L E
Sbjct: 187 LTEG 190
>gi|162944948|gb|ABY20543.1| SD18661p [Drosophila melanogaster]
Length = 525
Score = 277 bits (709), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 242/456 (53%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y+ +KKF+L + R+L KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ T+ + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDL+ +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPANS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK + ++E+ N IV LSDV LD V + L +
Sbjct: 250 SRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMDKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 507
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P+F Y+ +KKF+L + R+L
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|281183399|gb|ADA53568.1| FI13109p [Drosophila melanogaster]
Length = 527
Score = 277 bits (708), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 241/456 (52%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y+ +KKF+L + R+L KS ++
Sbjct: 73 KAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTAPRMKSDYMQQ 132
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ T+ + VVLG+++QL
Sbjct: 133 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVVLGLLTQL 191
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDL+ +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 192 KEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPANS 251
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK + ++E+ N IV LSDV LD V L +
Sbjct: 252 SRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMEKLRQLFVG 311
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 312 -YDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDL----------- 359
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 360 ----ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 413
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 414 RLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 473
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 474 DLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 509
Score = 78.6 bits (192), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P+F Y+ +KKF+L + R+L
Sbjct: 63 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTA 122
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ +
Sbjct: 123 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKE 181
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 182 AVVLGLLTQLKEG 194
>gi|24658786|ref|NP_647995.1| Pole2 [Drosophila melanogaster]
gi|7295418|gb|AAF50735.1| Pole2 [Drosophila melanogaster]
Length = 525
Score = 277 bits (708), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 241/456 (52%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y+ +KKF+L + R+L KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ T+ + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDL+ +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPANS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK + ++E+ N IV LSDV LD V L +
Sbjct: 250 SRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMEKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 507
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P+F Y+ +KKF+L + R+L
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|194867277|ref|XP_001972036.1| GG14105 [Drosophila erecta]
gi|190653819|gb|EDV51062.1| GG14105 [Drosophila erecta]
Length = 525
Score = 276 bits (707), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 156/456 (34%), Positives = 242/456 (53%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y+ +KKF+L + R+L KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRFRYNQRVKKFELDTQPRQLLTAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ T+ + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDL+ +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPANS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK + ++E+ N IV LSDV LD V + L +
Sbjct: 250 SRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMDKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTTSTRNHHELRHHLDALGGLAAGCEQLRKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 507
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P+F Y+ +KKF+L + R+L
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRVKKFELDTQPRQLLTA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|125977344|ref|XP_001352705.1| GA10347 [Drosophila pseudoobscura pseudoobscura]
gi|54641454|gb|EAL30204.1| GA10347 [Drosophila pseudoobscura pseudoobscura]
Length = 525
Score = 275 bits (704), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 155/456 (33%), Positives = 242/456 (53%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P++ Y+ +KKF+ R+L + KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRYRYNTRIKKFEPDLTPRQLLSAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF N A KL + E L++ + + + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGANAQAKKFKLQFAENLLATSTI-REAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG +QLDLS +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGSIQLDLSGARFHAGFFCEGCFVLAEGNYSNGVLKVDGLGFPPAEPATS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK R+ ++E+ N IV LSDV LD V L +
Sbjct: 250 SRAFFGTANTWGGESTKLLKYSPRLQELERTNTETTIVFLSDVRLDLPVVVEKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNHHELRQHLDALGGLAAGCEQLKKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--TEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTSQIEQHFSRTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSTQHGCTVLNTGSFVKSKFAFKV 507
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P++ Y+ +KKF+ R+L +
Sbjct: 61 TPHVERAALEKAINELNRVGLDEGETVFALIDAFTVPRYRYNTRIKKFEPDLTPRQLLSA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF N A KL + E L++ + + +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGANAQAKKFKLQFAENLLATSTI-RE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|195021422|ref|XP_001985392.1| GH17033 [Drosophila grimshawi]
gi|193898874|gb|EDV97740.1| GH17033 [Drosophila grimshawi]
Length = 526
Score = 275 bits (703), Expect = 6e-71, Method: Compositional matrix adjust.
Identities = 156/455 (34%), Positives = 240/455 (52%), Gaps = 27/455 (5%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y+ +KKF+ + R L ++ K+ ++
Sbjct: 70 KAINELNRVGLDEGETVFALIDAFTVPRFRYNSRIKKFERDGQPRSLLSEPRMKADYLQQ 129
Query: 283 RYNIIRQRTLRHSLF------NNINPNADS--VKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF + + A + KL + E L++ +N+ + V+LG+++QL
Sbjct: 130 RYAMLLQKTLRHDLFAPAVIQDGVASEAQTKKFKLQFAENLLATSNLK-EAVILGLLTQL 188
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDLS YH G + E C VL EG Y + IL VD LGFPP E + +
Sbjct: 189 KEGKFYVEDPTGCVQLDLSGARYHAGFFCEGCFVLAEGSYANGILKVDGLGFPPAEPASS 248
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK R+ ++E++N +V LSDV LD V L +
Sbjct: 249 SRAFFGTGNTWGGESAKLLKYSPRLQELERSNTETTLVFLSDVRLDLPVVMEKLRQLFVG 308
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + + L + L + C + ++ D+ S +
Sbjct: 309 -YDSCPPQAIVLMGAFTASTRNHHELRQHLDALGALAAGCDQLKKQTDLILVPSAEDPTA 367
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVR 574
IF P LP+ + + P + +ATNPCR+QYC+Q+I+V R
Sbjct: 368 PNIFPRAP----------------LPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVCR 411
Query: 575 EELLSKMCRNCIKFPEEGD-ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
+L++K CRN + FP + I +HF RTLV QG LV + PV+W AL LYPLPD
Sbjct: 412 LDLMAKFCRNTLHFPPDTTHIEQHFARTLVCQGHLVPIHPIAMPVHWDYDPALWLYPLPD 471
Query: 634 LVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
LV++GD ++ C +N + AF+V
Sbjct: 472 LVVMGDSCQSFASTQHGCTVLNTGSFVKSKFAFKV 506
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 75/133 (56%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P + +E NE R ++ E +F++I AF +P+F Y+ +KKF+ + R L ++
Sbjct: 60 TPHVEREALEKAINELNRVGLDEGETVFALIDAFTVPRFRYNSRIKKFERDGQPRSLLSE 119
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADS--VKLDWVEYLMSLTNVNHK 118
K+ ++RY ++ Q+TLRH LF + + A + KL + E L++ +N+ +
Sbjct: 120 PRMKADYLQQRYAMLLQKTLRHDLFAPAVIQDGVASEAQTKKFKLQFAENLLATSNLK-E 178
Query: 119 TVVLGMISQLKEN 131
V+LG+++QLKE
Sbjct: 179 AVILGLLTQLKEG 191
>gi|195174444|ref|XP_002027984.1| GL21402 [Drosophila persimilis]
gi|194115694|gb|EDW37737.1| GL21402 [Drosophila persimilis]
Length = 525
Score = 273 bits (698), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 155/456 (33%), Positives = 241/456 (52%), Gaps = 29/456 (6%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P++ Y+ +KKF+ R+L + KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRYRYNTRIKKFEPDLTPRQLLSAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF A KL + E L++ + V + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGATAQAKKFKLQFAENLLATSTV-REAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG +QLDLS +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGSIQLDLSGARFHAGFFCEGCFVLAEGNYSNGVLKVDGLGFPPAEPATS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK R+ ++E+ N IV LSDV LD V L +
Sbjct: 250 SRAFFGTANTWGGESTKLLKYSPRLQELERTNTETTIVFLSDVRLDLPVVVEKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNHHELRQHLDALGGLAAGCEQLKKQTDL----------- 357
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++VP E +L A +P+ + + P + +ATNPCR+QYC+Q+I+V
Sbjct: 358 ----ILVPS--TEDPSAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYCTQQIVVC 411
Query: 574 REELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W AL LYPLP
Sbjct: 412 RLDLMAKFCRNTLHFPEDTSQIEQHFSRTIVCQGHLVPIHPIAMPVHWDYDPALWLYPLP 471
Query: 633 DLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
DL+++GD +++ C +N + AF+V
Sbjct: 472 DLIVMGDSCQSFSSTQHGCTVLNTGSFVKSKFAFKV 507
Score = 73.6 bits (179), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F++I AF +P++ Y+ +KKF+ R+L +
Sbjct: 61 TPHVERPALEKAINELNRVGLDEGETVFALIDAFTVPRYRYNTRIKKFEPDLTPRQLLSA 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF A KL + E L++ + V +
Sbjct: 121 PRMKSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGATAQAKKFKLQFAENLLATSTV-RE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|49900773|gb|AAH76287.1| Pole2 protein [Danio rerio]
Length = 341
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 141/336 (41%), Positives = 208/336 (61%), Gaps = 32/336 (9%)
Query: 330 MISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPP 389
MI+QL+E +++LEDP+G VQLD+S+ H GLYTE+C VL EG Y+D + HV A GFPP
Sbjct: 1 MITQLREGKFYLEDPSGTVQLDISKAQLHSGLYTESCFVLAEGWYEDSVFHVSAFGFPPT 60
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC 449
E S +R YFGN N +GGPS ++K+ ++ ++E+ NE+AM V++SDV LD+ +V
Sbjct: 61 EPSSFTRAYFGNVNFFGGPSSTAVKASAKLKQLEEENEDAMFVLVSDVWLDSVEV----L 116
Query: 450 EFITSEFQG--------FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG 501
E I + F G F+ + ++ P Y ++ +R+ + C +FP
Sbjct: 117 EKIHTMFSGYSALPPTCFIFCGSFSSAP----YGRTQLRSLRDSFKALADLIC-EFP--- 168
Query: 502 DISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPC 561
S H S+ +F+ P+ G V + P L + IT EFQ VP S TNPC
Sbjct: 169 --SIHSSR------FVFVPGPEDPGPGAVLPR---PPLAEHITEEFQQRVPLSVFTTNPC 217
Query: 562 RVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYW 620
R+QYCSQE++++RE+L++KMCRNC++ P DI HFV+T++SQG L LPL +CPV+W
Sbjct: 218 RIQYCSQELVIIREDLVNKMCRNCVRLPSSSLDIPTHFVKTVLSQGHLTPLPLYVCPVFW 277
Query: 621 SQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+ L LYP+PD+++ D+ + + I NTDC+ INP
Sbjct: 278 AYDHTLRLYPVPDVIVFADKYDPFNICNTDCLCINP 313
>gi|340714718|ref|XP_003395872.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit
2-like [Bombus terrestris]
Length = 523
Score = 266 bits (681), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 161/459 (35%), Positives = 251/459 (54%), Gaps = 34/459 (7%)
Query: 222 LKLSSECC--RTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL 279
LKL+ E C + E I +VI FDIP+ Y+ KF L L A++ KS L
Sbjct: 67 LKLAIEECIKPNALKDTETILNVIDVFDIPRIKYELSENKFVLETVTPNLVAEAQYKSIL 126
Query: 280 FRERYNIIRQRTLRHSLFNNINPNADSVKLDWVE-----YLMSLTNVNHKTVVLGMISQL 334
F++R+ ++ RT+RH LF P K DW+E +L+S + + V+G++SQL
Sbjct: 127 FKDRFELLWYRTMRHELFTP--PMPGEKKXDWIELIPIEHLLSGSKEGN-VYVMGLLSQL 183
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
E +Y+LED G +++DL + + GL E IV+ +G +KD ILHV LGFPP E+S N
Sbjct: 184 VEGQYYLEDTGGTIKVDLQKARFQDGLIMECSIVIADGDFKDGILHVKNLGFPPAESSSN 243
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT- 453
+R+ FGN N +GG S SLK ++ E++N+ MIV +S++ LD+ V +
Sbjct: 244 ARVDFGNANTFGGLSEFSLKLSEKLKTYEESNKEGMIVFISEMWLDDKTVLRKFKIMLEG 303
Query: 454 -SEFQ--GFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKN 510
SE+ FV + P + S++ L+ E L + I++P+ SK
Sbjct: 304 YSEYPPIAFVLCGHFLSFPAKPS--SRQKLI---EGLKNLADIIIQYPDINQTSK----- 353
Query: 511 NGEKDIIFLIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQE 569
F+ VP + + K+L LPK +T +F+ +P + ATNPCR+QYC++E
Sbjct: 354 -------FIFVPA--TDDIGSPKILPKLPLPKNLTEDFRKSIPGAIFATNPCRIQYCTKE 404
Query: 570 ILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLY 629
I+V+R ++L+KMCRN + FP G+I H+ ++++ Q L L L + P+YW AL +Y
Sbjct: 405 IVVLRGDILTKMCRNTLYFPFHGNIHDHYAKSIICQSHLTPLSLPMLPIYWKYNHALQIY 464
Query: 630 PLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
P PDL++ D AY ++C INP + ++F+V
Sbjct: 465 PTPDLIVTADGFEAYETTYSNCHIINPGSFSKNDHSFKV 503
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/127 (32%), Positives = 65/127 (51%), Gaps = 9/127 (7%)
Query: 11 TYDLIEFTTNECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDA 69
T + ++ EC + + E I +VI FDIP+ Y+ KF L L A++
Sbjct: 63 TTENLKLAIEECIKPNALKDTETILNVIDVFDIPRIKYELSENKFVLETVTPNLVAEAQY 122
Query: 70 KSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDW-----VEYLMSLTNVNHKTVVLGM 124
KS LF++R+ ++ RT+RH LF P K DW +E+L+S + + V+G+
Sbjct: 123 KSILFKDRFELLWYRTMRHELFT--PPMPGEKKXDWIELIPIEHLLSGSKEGN-VYVMGL 179
Query: 125 ISQLKEN 131
+SQL E
Sbjct: 180 LSQLVEG 186
>gi|189239087|ref|XP_968222.2| PREDICTED: similar to DNA polymerase epsilon subunit B [Tribolium
castaneum]
Length = 519
Score = 266 bits (680), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 157/435 (36%), Positives = 240/435 (55%), Gaps = 25/435 (5%)
Query: 228 CCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNII 287
C ++ + E IFSVI+AFD P+ Y+ D K++ L + K +L + +D+K++LF +RY I
Sbjct: 79 CLKSGYDRNETIFSVINAFDFPKVSYNLDRKQYYLTENKPRLLSSADSKAQLFADRYATI 138
Query: 288 RQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNV--NHKTVVLGMISQLKENRYFLEDPT 345
RT R+ + ++L V+YL++L+NV NH T+VLG + Q+ E +Y+LEDPT
Sbjct: 139 LHRTKRNFIQKATENTNIKLELQTVDYLLTLSNVSLNH-TLVLGSLLQVSEGKYYLEDPT 197
Query: 346 GIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIW 405
GIVQLDLS Y+ GL+ ENC VLV GHY+D+I+ V L PP E NSR +F N +
Sbjct: 198 GIVQLDLSHAVYYGGLFAENCFVLVNGHYEDKIIKVSTLILPPGEEYANSRPFFNTINYF 257
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTM 465
GGPSP LK ++ + N A + S+V LD+ + L E + F+GF P+
Sbjct: 258 GGPSPTPLKDSVKLRDHLQRNRGASFMFFSNVWLDHPSIFEKL-ELL---FEGFNPSPPA 313
Query: 466 A---TNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP 522
A + CS + +L ++ K+ ++ F+ VP
Sbjct: 314 AFVFMGNFMSESCSSNKMDTLRKLFKQLAELINKYENLATVTN------------FIFVP 361
Query: 523 KIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM 581
+ E TS V+ +P IT + V + +NPCR+QYC++EI + R ++L K+
Sbjct: 362 GL--EDPCTSYVVPRLPIPSCITEDMTKMVKKAVFTSNPCRLQYCNKEITIFRADVLPKL 419
Query: 582 CRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQL 641
+ + P++ ++S++ RT++SQG L LPLN V+W LSL PLPDLV++GD+
Sbjct: 420 LQASLHKPKKSELSENLTRTIISQGHLSPLPLNALTVHWDFDYTLSLNPLPDLVVIGDKA 479
Query: 642 NAYTIQNTDCIFINP 656
Y + C INP
Sbjct: 480 EPYEGKYKGCQLINP 494
Score = 75.5 bits (184), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 42/112 (37%), Positives = 69/112 (61%), Gaps = 3/112 (2%)
Query: 22 CCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNII 81
C ++ + E IFSVI+AFD P+ Y+ D K++ L + K +L + +D+K++LF +RY I
Sbjct: 79 CLKSGYDRNETIFSVINAFDFPKVSYNLDRKQYYLTENKPRLLSSADSKAQLFADRYATI 138
Query: 82 RQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNV--NHKTVVLGMISQLKEN 131
RT R+ + ++L V+YL++L+NV NH T+VLG + Q+ E
Sbjct: 139 LHRTKRNFIQKATENTNIKLELQTVDYLLTLSNVSLNH-TLVLGSLLQVSEG 189
>gi|443721229|gb|ELU10622.1| hypothetical protein CAPTEDRAFT_182971 [Capitella teleta]
Length = 525
Score = 260 bits (664), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 164/457 (35%), Positives = 250/457 (54%), Gaps = 33/457 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDAKSKLFRE 282
+C + + + +F+VI AF IP+F Y KKF + D R L + KS+++
Sbjct: 72 DCNQEGRENVDDVFNVIDAFSIPKFVYCKTSKKFLPADTVGDGTRSLFCEGSKKSEIYMN 131
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY++I QRT RH LF NP + K L VE+L+ T + +VLGM+SQLKE
Sbjct: 132 RYSLIHQRTARHELFTPAAIGSNPTDAAKKFVLKPVEFLLGSTAKLGEIIVLGMLSQLKE 191
Query: 337 NRYFLEDPTGIVQLDLSQT-SYHPG--LYTENCIVLVEGHYKDQILHVDALGFPPPEASK 393
++FLED TG V LDL++ S+ L+TE VL EG Y+D + HV+A GFPPPE +K
Sbjct: 192 GKWFLEDNTGAVPLDLARAISFFVSIWLFTEFSFVLAEGCYEDGVFHVNAFGFPPPELAK 251
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT 453
+R +FG+ N +GG ++ KS N + ++E++NE+ M+VILSDV LD KV + L
Sbjct: 252 TTRSFFGSVNFFGGCQEIN-KSSN-LLQIERDNEDGMMVILSDVWLDEAKVMDKLQVL-- 307
Query: 454 SEFQGF--VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN 511
FQG+ VP P C + E + R F GDI +
Sbjct: 308 --FQGYSEVP-------PICFILCGNFLSKPYGEDHND--RLIEAFNALGDILSAYTDLI 356
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
+ IF+ PK G++ + P L +T +P + A+NPCR+QYC+Q I
Sbjct: 357 TQSKFIFVPGPKDPGPGSILPR---PGLFSCLTEGITKHIPGAIFASNPCRIQYCTQHIC 413
Query: 572 VVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
++RE+++ +M RNC++FP++G I H+ +T+V Q + LPL++ P +W +L LYP+
Sbjct: 414 ILREDMVLRMGRNCVRFPQDGKIEDHYAKTVVCQSHMTPLPLHVKPTHWDFDHSLWLYPI 473
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PD+ + D + Y+ +CI NP + + F+V
Sbjct: 474 PDVYVSADSFSTYSKNEAECIVTNPGSFSKNQFTFQV 510
Score = 73.2 bits (178), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 47/128 (36%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF----KLVDKKRKLCADSDA 69
++E N+C + + + +F+VI AF IP+F Y KKF + D R L +
Sbjct: 65 ILEEALNDCNQEGRENVDDVFNVIDAFSIPKFVYCKTSKKFLPADTVGDGTRSLFCEGSK 124
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
KS+++ RY++I QRT RH LF NP + K L VE+L+ T + +VLG
Sbjct: 125 KSEIYMNRYSLIHQRTARHELFTPAAIGSNPTDAAKKFVLKPVEFLLGSTAKLGEIIVLG 184
Query: 124 MISQLKEN 131
M+SQLKE
Sbjct: 185 MLSQLKEG 192
>gi|324506820|gb|ADY42900.1| DNA polymerase epsilon subunit 2 [Ascaris suum]
Length = 513
Score = 258 bits (660), Expect = 6e-66, Method: Compositional matrix adjust.
Identities = 155/453 (34%), Positives = 233/453 (51%), Gaps = 28/453 (6%)
Query: 226 SECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYN 285
+ C E +F+VI F P+FDYD L K L+ + + D L R R
Sbjct: 74 ANCANKNAAKSESLFNVIDIFSAPRFDYDDSLNKLVLIPGEASAIGNCDDAVNLLRNRLK 133
Query: 286 IIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPT 345
+ QR LR S F + + L VE L+ + +VLG+++Q + Y +ED T
Sbjct: 134 FVTQRVLRSSAFEHYH-------LSTVETLLGSASRADNVIVLGLLTQCSADSYQVEDLT 186
Query: 346 GIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIW 405
G + +DLS ++H GL+T+ CI+L+EG Y +L V +G P E + +R +FGN+N +
Sbjct: 187 GSMPVDLSNATFHSGLFTDGCIMLLEGSYSAGLLTVSGVGLAPIETADATRAFFGNENWF 246
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTM 465
GG S V+ ++V R+ +A IV LSDV LD+ KV L F GF + +
Sbjct: 247 GGESAVAYRTVPRLRSANLKYTDARIVFLSDVWLDDPKVMKGLYNL----FVGFSESPPI 302
Query: 466 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIY 525
A C +CS L+ R+ IS+ + +N+ + F+ VP
Sbjct: 303 AFVFCG-NFCSCAGTPDAYNRLTDGFRHLANI-----ISEQIDENSQLAESHFVFVPG-S 355
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNC 585
+ T+ + + P LP F E +PN + A+NPCR+QY +QEI+++R +++ KMCRN
Sbjct: 356 DDPTIGTILPRPPLP-FALFEQMKKIPNCSFASNPCRIQYANQEIVILRHDIIEKMCRNS 414
Query: 586 IKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAY 644
I P DI++HF RT+ S G L LPL++CPV W L LYPLPDLV++ DQ +
Sbjct: 415 IHMPSATRDIAEHFCRTIASVGHLTPLPLHVCPVLWQMDYCLRLYPLPDLVVIADQFQQF 474
Query: 645 TIQNTDCIFINPV--------FHNTVRNAFEVE 669
+ +C+F NP FH +A E+E
Sbjct: 475 ALSQHECLFANPGSFARSQLEFHVYYPSAGEIE 507
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 7/125 (5%)
Query: 3 LHRDNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRK 62
L ++P + + C E +F+VI F P+FDYD L K L+ +
Sbjct: 57 LSLNSPLLDLETFQSAVANCANKNAAKSESLFNVIDIFSAPRFDYDDSLNKLVLIPGEAS 116
Query: 63 LCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVL 122
+ D L R R + QR LR S F + + L VE L+ + +VL
Sbjct: 117 AIGNCDDAVNLLRNRLKFVTQRVLRSSAFEHYH-------LSTVETLLGSASRADNVIVL 169
Query: 123 GMISQ 127
G+++Q
Sbjct: 170 GLLTQ 174
>gi|357605568|gb|EHJ64679.1| DNA-directed DNA polymerase epsilon 2 [Danaus plexippus]
Length = 373
Score = 252 bits (643), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 142/372 (38%), Positives = 213/372 (57%), Gaps = 25/372 (6%)
Query: 303 NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLY 362
N + +L +E L S ++ + +VLG+I+QL E +Y+LEDPTG V LD+SQT YH GL+
Sbjct: 3 NENRFQLRTIEVLQSSSSRVDEVIVLGLITQLTEGKYYLEDPTGSVPLDMSQTRYHSGLF 62
Query: 363 TENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKM 422
TE+ VL EG+Y D++LHV L PP E + S YFGN N +GG S LK ++K+
Sbjct: 63 TESSFVLAEGYYDDKVLHVMGLVLPPSETRETSLPYFGNLNTFGGISKTLLKHSKNLSKI 122
Query: 423 EKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATN-----PCRVQYCSQ 477
E+ NE+ MI+ LS+V DN KV + L + + S + F P + + P ++ +Q
Sbjct: 123 EQENEDGMIIFLSEVWFDNIKVISKL-KTLFSGYNDFPPIAIVFMGEFLSCPYGYEHSTQ 181
Query: 478 EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSP 537
+ L +C + F + + K F+ VP + + + P
Sbjct: 182 -----LKAALGNLCDMILPFKKLRESCK------------FIFVPG-RGDPAAPNILPRP 223
Query: 538 ALPKFITSEFQGFVPNSTM-ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 596
A+P FIT + + + +S + TNPCR+QYC+QEI+V+R++L++KMCRN + FP+ GDI
Sbjct: 224 AIPSFITQDIKSKLGDSVIFTTNPCRIQYCTQEIVVIRQDLVTKMCRNSVHFPDAGDIPD 283
Query: 597 HFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
H +TL+SQ TL L L + P+YW +LSLYP+PDLV++ D YT +C INP
Sbjct: 284 HLTKTLLSQCTLSPLSLAVQPIYWKHADSLSLYPMPDLVVVADSFQPYTRSYQNCQIINP 343
Query: 657 VFHNTVRNAFEV 668
+F+V
Sbjct: 344 GSFPHTEYSFKV 355
>gi|328778914|ref|XP_001120791.2| PREDICTED: DNA polymerase epsilon subunit 2-like [Apis mellifera]
Length = 499
Score = 250 bits (638), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 143/424 (33%), Positives = 237/424 (55%), Gaps = 40/424 (9%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 296
E + +VI FD+P+ YD KKF L + L A++ KS +F++R+ ++ RTLRH L
Sbjct: 84 ETVLNVIDVFDVPKIKYDLSKKKFILENILPDLYAEAQYKSTIFKDRFELLWYRTLRHEL 143
Query: 297 FNNINPNADSVKLDWVE-----YLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
F I P K +W+E YL+S T + V+G++++L E +Y+LED G ++LD
Sbjct: 144 F--IPPKLGEKKENWIELTSIEYLLSETKKGN-VYVMGLLTELTEGQYYLEDTGGFIKLD 200
Query: 352 LSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
L ++S IV+V G++++ +LHV+ +G PP E+S N+R+ FGN N +GG +
Sbjct: 201 LKKSS----------IVIVNGNFQEGVLHVENIGLPPAESSNNARVDFGNSNTFGGSHNL 250
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCR 471
SLK ++ E++N++ MIV +S++ LD+ V I +G+ +A C
Sbjct: 251 SLKFSEKLKIFEESNKDGMIVFVSEIWLDDVTVLRKFKTMI----EGYSECPPIAFVLCG 306
Query: 472 VQYCSQEILVVREELLSKMCRNC----IKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVE 527
+ S + + L K +N I++P+ SK F+ VP
Sbjct: 307 -HFLSFSTNISSKHKLKKGLKNLADIIIQYPDIKQTSK------------FIFVPAPDDI 353
Query: 528 GTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK 587
G+ SP LPK +T +F+ +P + TNPCR+QYC++EI+V+RE++L+KMCRN +
Sbjct: 354 GSPKILPRSP-LPKHLTEDFRKNIPGAIFTTNPCRIQYCTKEIVVLREDILTKMCRNALH 412
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQ 647
FP +G+I H+ ++++ Q L L L++ P+YW +L +YP PDL++ D+ Y
Sbjct: 413 FPSQGNIYDHYAKSIICQSHLSPLSLSIIPIYWKYNHSLQIYPTPDLIVAADRFAEYETN 472
Query: 648 NTDC 651
++C
Sbjct: 473 YSNC 476
Score = 67.0 bits (162), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 69/131 (52%), Gaps = 9/131 (6%)
Query: 7 NPSCTYDLIEFTTNECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA 65
+P+ T ++ E R + E + +VI FD+P+ YD KKF L + L A
Sbjct: 59 DPNVTIATLKLAIQEYIRPNTLKDTETVLNVIDVFDVPKIKYDLSKKKFILENILPDLYA 118
Query: 66 DSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDW-----VEYLMSLTNVNHKTV 120
++ KS +F++R+ ++ RTLRH LF I P K +W +EYL+S T +
Sbjct: 119 EAQYKSTIFKDRFELLWYRTLRHELF--IPPKLGEKKENWIELTSIEYLLSETKKGN-VY 175
Query: 121 VLGMISQLKEN 131
V+G++++L E
Sbjct: 176 VMGLLTELTEG 186
>gi|195428747|ref|XP_002062427.1| GK17530 [Drosophila willistoni]
gi|194158512|gb|EDW73413.1| GK17530 [Drosophila willistoni]
Length = 531
Score = 247 bits (630), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 152/464 (32%), Positives = 231/464 (49%), Gaps = 41/464 (8%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +E R ++ E +F+VI AF +P++ Y+ KKF+L + R+L KS ++
Sbjct: 71 KAINELNRVGLDEGETVFAVIDAFTVPRYRYNQRNKKFELDAQPRQLLTQPGMKSTYLQQ 130
Query: 283 RYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF + A KL + E L++ TN + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGADAQAKKFKLQFAENLLA-TNSMKEAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFP------- 387
KE ++++EDPTG VQLDLS +H G + E C VL EG Y + +L +
Sbjct: 190 KEGKFYVEDPTGCVQLDLSGARFHAGFFCEGCFVLAEGKYSNGVLKGKHILMAWDSHQRR 249
Query: 388 -PPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRN 446
PP +FG N WGG S LK R+ ++E+ N IV LSDV LD V
Sbjct: 250 QPPAVVP----FFGTANSWGGESGKLLKYSQRLQELERTNTETTIVFLSDVRLDLPIVME 305
Query: 447 NLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKH 506
L + + P + + P +Q + + L + C + + D+
Sbjct: 306 KLRQLFVG-YDSCPPQAIVLMGPFSSSSKNQHEMRQHFDALGGLAAGCDQLKRQTDL--- 361
Query: 507 VSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQY 565
++VP E +L A LP+ + + P + +ATNPCR+QY
Sbjct: 362 ------------ILVPS--TEDPTAPNILPRAPLPECLAAGLIKAWPRTQLATNPCRLQY 407
Query: 566 CSQEILVVREELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYG 624
C+Q+I+V R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W
Sbjct: 408 CTQQIVVCRLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDP 467
Query: 625 ALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
AL LYPLPDL+++GD ++ C +N + AF+V
Sbjct: 468 ALWLYPLPDLIVMGDSCQSFQSTQHACTVLNTGSFVKSKFAFKV 511
Score = 79.0 bits (193), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 9/133 (6%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +E NE R ++ E +F+VI AF +P++ Y+ KKF+L + R+L
Sbjct: 61 TPHVERSALEKAINELNRVGLDEGETVFAVIDAFTVPRYRYNQRNKKFELDAQPRQLLTQ 120
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHK 118
KS ++RY ++ Q+TLRH LF + A KL + E L++ TN +
Sbjct: 121 PGMKSTYLQQRYAMLLQKTLRHDLFAPAVIQDGVGADAQAKKFKLQFAENLLA-TNSMKE 179
Query: 119 TVVLGMISQLKEN 131
VVLG+++QLKE
Sbjct: 180 AVVLGLLTQLKEG 192
>gi|16769320|gb|AAL28879.1| LD25702p [Drosophila melanogaster]
gi|42407253|dbj|BAD10843.1| DNA polymerase epsilon second subunit [Drosophila melanogaster]
Length = 403
Score = 246 bits (627), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 139/403 (34%), Positives = 211/403 (52%), Gaps = 29/403 (7%)
Query: 276 KSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVV 327
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ + VV
Sbjct: 2 KSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVV 60
Query: 328 LGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFP 387
LG+++QLKE ++++EDPTG VQLDL+ +H G + E C VL EG+Y + +L VD LGFP
Sbjct: 61 LGLLTQLKEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFP 120
Query: 388 PPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNN 447
P E + +SR +FG N WGG S LK + ++E+ N IV LSDV LD V
Sbjct: 121 PAEPANSSRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMEK 180
Query: 448 LCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHV 507
L + + P + + P + L + L + C + ++ D+
Sbjct: 181 LRQLFVG-YDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDL---- 235
Query: 508 SKNNGEKDIIFLIVPKIYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMATNPCRVQYC 566
++VP E +L A +P+ + + P + +ATNPCR+QYC
Sbjct: 236 -----------ILVPS--SEDPTAPNILPRAPIPECLAAGLLKAWPRTQLATNPCRLQYC 282
Query: 567 SQEILVVREELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGA 625
+Q+I+V R +L++K CRN + FPE+ I +HF RT+V QG LV + PV+W A
Sbjct: 283 TQQIVVCRLDLMAKFCRNTLHFPEDTSQIEQHFARTIVCQGHLVPIHPIAMPVHWDYDPA 342
Query: 626 LSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
L LYPLPDL+++GD +++ C +N + AF+V
Sbjct: 343 LWLYPLPDLIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 385
Score = 44.7 bits (104), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 38/70 (54%), Gaps = 9/70 (12%)
Query: 70 KSKLFRERYNIIRQRTLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVV 121
KS ++RY ++ Q+TLRH LF A KL + E L++ T+ + VV
Sbjct: 2 KSDYMQQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVV 60
Query: 122 LGMISQLKEN 131
LG+++QLKE
Sbjct: 61 LGLLTQLKEG 70
>gi|383849187|ref|XP_003700227.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Megachile
rotundata]
Length = 492
Score = 244 bits (623), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 149/453 (32%), Positives = 240/453 (52%), Gaps = 53/453 (11%)
Query: 222 LKLS-SECCRTE-INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL 279
LKL+ EC R + + + E + +VI AFDIP+ YD + KKF L L A++ KS++
Sbjct: 67 LKLAIEECIRPDTLKATETVLNVIDAFDIPKIKYDLNKKKFILSTVAPDLYAEAQYKSEI 126
Query: 280 FRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRY 339
F+ R+ ++ RTLRH LFN P K DW+E L + H ++S+ K
Sbjct: 127 FKNRFELLWYRTLRHELFNP--PRLGEKKDDWIE----LVPIEH------LLSESK---- 170
Query: 340 FLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYF 399
TG ++ GL E +V+ G Y+D +L+V+ LGFPP E+S N+R+ F
Sbjct: 171 -----TG--------NNFQDGLIMEASVVIANGDYRDGVLYVEELGFPPAESSYNARVDF 217
Query: 400 GNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDN----DKVRNNLCEFITSE 455
G+ N +GGP +SLK ++ E++N++ MI+ +S+V LD+ K R L +
Sbjct: 218 GDANTFGGPHNLSLKFSEKLKHYEESNKDGMIIFVSEVWLDDITVLQKFRTMLAGYAECP 277
Query: 456 FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
FV + P + + +E L + +++P + SK
Sbjct: 278 PIAFVLCGHFLSFPANITSAHK-----LKEGLKDLRDMIMQYPSIKESSK---------- 322
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
F+ VP G+ SP LPK+IT F+ +P + TNPCR+QYC++EI+V+RE
Sbjct: 323 --FIFVPASDDVGSPKILPRSP-LPKYITENFRKNIPGAIFTTNPCRIQYCTKEIVVIRE 379
Query: 576 ELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
++L+KMCRN + FP G+I H+ ++++ Q L L L++ P+YW AL + P PDL+
Sbjct: 380 DILTKMCRNTLNFPHTGNIYDHYAKSIICQSHLTPLSLSIVPIYWKHDHALQINPTPDLI 439
Query: 636 ILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
+ D+ +Y ++++C INP ++F+V
Sbjct: 440 VSADKFESYETKHSNCHIINPGLFPKNDHSFKV 472
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 59/103 (57%), Gaps = 3/103 (2%)
Query: 6 DNPSCTYDLIEFTTNECCRTE-INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLC 64
++P T + ++ EC R + + + E + +VI AFDIP+ YD + KKF L L
Sbjct: 58 NDPHVTVENLKLAIEECIRPDTLKATETVLNVIDAFDIPKIKYDLNKKKFILSTVAPDLY 117
Query: 65 ADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVE 107
A++ KS++F+ R+ ++ RTLRH LFN P K DW+E
Sbjct: 118 AEAQYKSEIFKNRFELLWYRTLRHELFN--PPRLGEKKDDWIE 158
>gi|242014786|ref|XP_002428066.1| DNA polymerase epsilon subunit, putative [Pediculus humanus
corporis]
gi|212512585|gb|EEB15328.1| DNA polymerase epsilon subunit, putative [Pediculus humanus
corporis]
Length = 524
Score = 238 bits (607), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 156/447 (34%), Positives = 249/447 (55%), Gaps = 40/447 (8%)
Query: 235 SEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRER--YNIIRQRTL 292
S E ++VI+AF++P F Y+ + KK+ D K +DA +K+F ++ Y + Q+TL
Sbjct: 81 SSETTWNVINAFEVPCFIYNREKKKYIKDDTVLKKGIFADAATKIFIKKRIYTSLIQKTL 140
Query: 293 RHSLFNNINP-NADSVKLDW--VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
R++L + N +V+ + VE+ + T V+LG++ Q + Y +ED TG +
Sbjct: 141 RNNLLKEVFAINGKNVQFIFKTVEWFLCATEKIDYAVILGLLVQKIDGNYAVEDDTGTLD 200
Query: 350 LDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPS 409
+D+S+ + GL+TE+ V +EG Y+D++ +V G P PE+SK SR++F + N +GGPS
Sbjct: 201 IDISEAIFSDGLFTEHSFVFLEGCYEDKVFYVSKFGLPLPESSKKSRMFFDDMNTFGGPS 260
Query: 410 PVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT--SEF--QGFVPNSTM 465
SL + + ++E+ N + MIV +SDV LD +V L SE+ FV
Sbjct: 261 LYSLSNSKALKEIEEKNPDEMIVFISDVWLDKPEVLKKLKILFDGFSEYPPYAFVLLGNF 320
Query: 466 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII----FLIV 521
++P YCS EL++ F E G++ + K+II F++V
Sbjct: 321 ISSPKGPNYCS--------ELIN-------GFNELGNLLESY------KNIINTSKFVLV 359
Query: 522 PKIYVEGTVTSKVL-SPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
P + G + ++L P K + +P T+ TNPCR+QYC++EI+V RE L++K
Sbjct: 360 PGPFDVG--SPRILPRPPFSKNLVKGLISKIPYLTLGTNPCRLQYCTKEIIVFRENLVTK 417
Query: 581 MCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
+CR+ I FP G+IS HF +T++SQGTL + L PVYWS +L LYPLPDL+++ D
Sbjct: 418 LCRSTIHFPNNGGNISNHFTKTIISQGTLAPMSLVSFPVYWSFSHSLDLYPLPDLIVVSD 477
Query: 640 QLNAYTIQNTDCIFINPVFHNTVRNAF 666
Q ++T + DC +P + VR F
Sbjct: 478 QSISFTEKYLDCTVTSP--GSFVREKF 502
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 58/104 (55%), Gaps = 5/104 (4%)
Query: 29 SEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRER--YNIIRQRTL 86
S E ++VI+AF++P F Y+ + KK+ D K +DA +K+F ++ Y + Q+TL
Sbjct: 81 SSETTWNVINAFEVPCFIYNREKKKYIKDDTVLKKGIFADAATKIFIKKRIYTSLIQKTL 140
Query: 87 RHSLFNNINP-NADSVKLDW--VEYLMSLTNVNHKTVVLGMISQ 127
R++L + N +V+ + VE+ + T V+LG++ Q
Sbjct: 141 RNNLLKEVFAINGKNVQFIFKTVEWFLCATEKIDYAVILGLLVQ 184
>gi|344253162|gb|EGW09266.1| DNA polymerase epsilon subunit 2 [Cricetulus griseus]
Length = 320
Score = 231 bits (590), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 121/306 (39%), Positives = 180/306 (58%), Gaps = 23/306 (7%)
Query: 357 YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSV 416
+H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R Y+GN N +GGPS S+K+
Sbjct: 27 FHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTRAYYGNINFFGGPSNASVKTS 86
Query: 417 NRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNST----MATNPCRV 472
++ ++E N++AM V +SDV LD +V L F G+ P + N
Sbjct: 87 AKLRQLEDENKDAMFVFVSDVWLDQVQVLEKL----HIMFSGYSPAPPTCFILCGNFSSA 142
Query: 473 QYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTS 532
Y ++ +++ L S C ++P S+ V E I+P+
Sbjct: 143 PYGKNQVQALKDSLKSLADIIC-EYPSIHQSSRFVFVPGPEDPGFGSILPR--------- 192
Query: 533 KVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG 592
P L + IT EF+ +P S TNPCR+QYC+QEI++ RE+L++KMCRNC++FP
Sbjct: 193 ----PPLAESITQEFRQRIPFSVFTTNPCRIQYCTQEIIIFREDLVNKMCRNCVRFPSSN 248
Query: 593 -DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDC 651
DI HFV+T++SQG L LPL +CPV+W+ L +YP+PDL+++ D+ + +T+ NT+C
Sbjct: 249 LDIPTHFVKTVLSQGHLTPLPLYVCPVHWTYDYTLRVYPVPDLLVIADKYDPFTVTNTEC 308
Query: 652 IFINPV 657
+ INPV
Sbjct: 309 LCINPV 314
>gi|350412390|ref|XP_003489629.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Bombus impatiens]
Length = 492
Score = 231 bits (589), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 153/454 (33%), Positives = 235/454 (51%), Gaps = 55/454 (12%)
Query: 222 LKLSSECC--RTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL 279
LKL+ E C + E + +VI FDIP+ Y+ KF L L A++ KS L
Sbjct: 67 LKLAIEECIKPNALKDTETVLNVIDVFDIPRIKYELFENKFVLETVTPNLVAEAQYKSIL 126
Query: 280 FRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRY 339
F++R+ ++ RT+RH LF P K DW+E L + H ++S KE
Sbjct: 127 FKDRFELLWYRTMRHELFTP--PMPGERKKDWIE----LVPIEH------LLSGSKEGNG 174
Query: 340 FLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYF 399
F + GL E IV+ G +KD ILHV LGFPP E+S N+R+ F
Sbjct: 175 FQD-----------------GLIMECSIVIANGDFKDGILHVKNLGFPPAESSSNARVDF 217
Query: 400 GNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT--SEFQ 457
GN N +GG S SLK ++ E++N++ MIV +S++ LD+ V + SE+
Sbjct: 218 GNANTFGGLSKFSLKLSEKLKTYEESNKDGMIVFVSEMWLDDKIVLRKFKIMLEGYSEYP 277
Query: 458 --GFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
FV + P + S++ L+ E L + I++P+ SK
Sbjct: 278 PIAFVLCGHFLSFPAKPS--SRQKLI---EGLKNLADIIIQYPDINQSSK---------- 322
Query: 516 IIFLIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVR 574
F+ VP I + + K+L LPK +T +F+ +P + ATNPCR+QYC++EI+V+R
Sbjct: 323 --FIFVPAI--DDIGSPKILPKLPLPKNLTEDFRKNIPGAIFATNPCRIQYCTKEIVVLR 378
Query: 575 EELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
++L+KMCRN + FP +G+I H+ ++++SQ L L L + P+YW AL +YP PDL
Sbjct: 379 GDILTKMCRNTLYFPFQGNIHDHYAKSIISQSHLTPLSLPMLPIYWKYNHALQIYPTPDL 438
Query: 635 VILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
++ D AY ++C INP + ++F+V
Sbjct: 439 IVTADGFEAYETTYSNCHIINPGSFSKNDHSFKV 472
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 50/98 (51%), Gaps = 3/98 (3%)
Query: 11 TYDLIEFTTNECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDA 69
T + ++ EC + + E + +VI FDIP+ Y+ KF L L A++
Sbjct: 63 TIENLKLAIEECIKPNALKDTETVLNVIDVFDIPRIKYELFENKFVLETVTPNLVAEAQY 122
Query: 70 KSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVE 107
KS LF++R+ ++ RT+RH LF P K DW+E
Sbjct: 123 KSILFKDRFELLWYRTMRHELFT--PPMPGERKKDWIE 158
>gi|326426544|gb|EGD72114.1| hypothetical protein PTSG_00131 [Salpingoeca sp. ATCC 50818]
Length = 564
Score = 229 bits (584), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 160/476 (33%), Positives = 245/476 (51%), Gaps = 68/476 (14%)
Query: 224 LSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRER 283
L++ T + ++F +++AF++P FDYDPD K+F L AD+DAKS +FR R
Sbjct: 81 LNNSGGTTSVLDRTKMFQIVNAFEVPAFDYDPDKKRFLPHKTAPTLAADADAKSAMFRHR 140
Query: 284 YNIIRQRTLRHSLF-NNINPNADSVKLDWVEYLMSLT----------------------- 319
+N IRQR LR F + + N+ ++KL V+ L+ L+
Sbjct: 141 FNAIRQRLLRRKEFATHASANSAAIKLTTVDALLGLSSSEFDDDDDSDSDANELDEDGVV 200
Query: 320 -NVNHKT-----VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGH 373
+T VLGMIS L+E++ FLEDP G V+L + + L TE I+LVEG
Sbjct: 201 ERAQRRTKGPLVTVLGMISLLQEDKCFLEDPDGKVELVVQNAVFPDALLTETSIILVEGV 260
Query: 374 YKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKN-NENAMIV 432
Y+D+ L+ + PP E + F N +GG K +R +E+ +++M V
Sbjct: 261 YRDRKLYAHNIASPPAEPRAQTDNVFSGTNFFGG----HFKEDDRAALIEEEMTQDSMFV 316
Query: 433 ILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLS---- 488
ILSDV LD +V L F+G+ P V+Y ++ LS
Sbjct: 317 ILSDVWLDKPEVLAKLRTL----FEGY-----SGAEPETVKY------ILMGNFLSAPYG 361
Query: 489 KMCRNCIK--FPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSE 546
K R ++ F E DI +++ N DI+ +VP G+ S + P LP +T
Sbjct: 362 KDARQTLEQCFNELADI---IAQFNITSDIV--LVPGPLDPGS-PSILPRPPLPTTLTRR 415
Query: 547 FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGD------ISKHFVR 600
F+ VPN+T TNP R+++ +QEI++ RE+L SK+ RNC+ P + D I H ++
Sbjct: 416 FRTRVPNATFTTNPARLRFGAQEIVLFREDLTSKLRRNCLLPPRDQDGNDAEDIKLHVIK 475
Query: 601 TLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
TLV Q TLV LPL++ PV W AL LYP+PD+++ GD+ + ++ C+++NP
Sbjct: 476 TLVDQSTLVPLPLHVRPVMWGFSQALQLYPVPDVLVTGDRTDTSSMAYEGCVWLNP 531
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/94 (40%), Positives = 57/94 (60%), Gaps = 1/94 (1%)
Query: 20 NECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYN 79
N T + ++F +++AF++P FDYDPD K+F L AD+DAKS +FR R+N
Sbjct: 83 NSGGTTSVLDRTKMFQIVNAFEVPAFDYDPDKKRFLPHKTAPTLAADADAKSAMFRHRFN 142
Query: 80 IIRQRTLRHSLF-NNINPNADSVKLDWVEYLMSL 112
IRQR LR F + + N+ ++KL V+ L+ L
Sbjct: 143 AIRQRLLRRKEFATHASANSAAIKLTTVDALLGL 176
>gi|380027429|ref|XP_003697426.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Apis florea]
Length = 493
Score = 228 bits (581), Expect = 8e-57, Method: Compositional matrix adjust.
Identities = 138/436 (31%), Positives = 231/436 (52%), Gaps = 50/436 (11%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 296
E + +VI FD+P+ YD KKF L + L A++ KS +F++R+ ++ RTLRH L
Sbjct: 84 ETVLNVIDIFDVPKITYDLSKKKFILENISPDLYAEAQYKSTIFKDRFELLWYRTLRHEL 143
Query: 297 FNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTS 356
F P K +W+E LT++ + ++S+ K+ ++ D
Sbjct: 144 FTP--PKLGEKKENWIE----LTSIEY------LLSESKKGNVYVMD------------- 178
Query: 357 YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSV 416
GL E IV+V G++++ +LHV+ +G PP E+S N+R+ FGN N +GG +SLK
Sbjct: 179 ---GLIMEASIVIVNGNFQEGVLHVENIGLPPAESSNNARVDFGNTNTFGGSHNLSLKFS 235
Query: 417 NRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCS 476
++ E++N++ MIV +S++ LD+ V I +G+ +A C + S
Sbjct: 236 EKLKIFEESNKDGMIVFVSEIWLDDVTVLRKFKTMI----EGYSECPPIAFVLCG-HFLS 290
Query: 477 QEILVVREELLSKMCRNC----IKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTS 532
+ + L K +N I++P+ SK F+ VP G+
Sbjct: 291 FSTNISSKHKLKKGLKNLADIIIQYPDIKQTSK------------FIFVPASDDIGSPKI 338
Query: 533 KVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG 592
SP LPK +T +F+ +P + TNPCR+QYC++EI+V+RE++L+KMCRN + FP +G
Sbjct: 339 LPRSP-LPKHLTEDFRKNIPGAIFTTNPCRIQYCTKEIVVLREDILTKMCRNALHFPNQG 397
Query: 593 DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCI 652
+I H+ ++++ Q L L L++ P+YW +L +YP PDL++ D+ Y ++C
Sbjct: 398 NIYDHYAKSIICQSHLSPLSLSVIPIYWKYNHSLQIYPTPDLIVAADRFAEYETNYSNCH 457
Query: 653 FINPVFHNTVRNAFEV 668
INP + +F+V
Sbjct: 458 VINPGLFSKNDYSFKV 473
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/127 (30%), Positives = 66/127 (51%), Gaps = 8/127 (6%)
Query: 7 NPSCTYDLIEFTTNECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA 65
+P+ T + ++ E R + E + +VI FD+P+ YD KKF L + L A
Sbjct: 59 DPNVTIETLKLAIQEYIRPNTLKDTETVLNVIDIFDVPKITYDLSKKKFILENISPDLYA 118
Query: 66 DSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDW-----VEYLMSLTNVNHKTV 120
++ KS +F++R+ ++ RTLRH LF P K +W +EYL+S + + V
Sbjct: 119 EAQYKSTIFKDRFELLWYRTLRHELFT--PPKLGEKKENWIELTSIEYLLSESKKGNVYV 176
Query: 121 VLGMISQ 127
+ G+I +
Sbjct: 177 MDGLIME 183
>gi|340386636|ref|XP_003391814.1| PREDICTED: DNA polymerase epsilon subunit 2-like, partial
[Amphimedon queenslandica]
Length = 421
Score = 228 bits (581), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 133/373 (35%), Positives = 209/373 (56%), Gaps = 22/373 (5%)
Query: 220 NWLKLSSECCRTEINSE-EQIFSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDAKS 277
+ ++ + E C E +S+ ++ +I+AF+ P F Y+PD KKF + KL A + K+
Sbjct: 63 DVIETAVEECNQETDSDPDKALVLINAFETPPFTYNPDQKKFLPIPLPSMKLFASALQKT 122
Query: 278 KLFRERYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMI 331
K+FRERYN+I QRT+RH LF+ + +L +EYL+S + + K +VLGM+
Sbjct: 123 KVFRERYNLIYQRTVRHHLFSPPVVGAAGSSKGPKFRLHTIEYLLSSSGLPDKIIVLGML 182
Query: 332 SQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEA 391
QL+E +++LED TG ++LDLS +H GL+ EN IVL EG +KD + H+ A+G PP E+
Sbjct: 183 IQLRERKFYLEDLTGKIELDLSACLFHTGLFVENSIVLAEGLFKDGVFHLSAIGCPPIES 242
Query: 392 SKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEF 451
S +R YFG N +GGPSP++ K+ ++ M K N+ M+V SD+ LD+DKV L
Sbjct: 243 SAITRNYFGTVNFFGGPSPIAAKASVKLQDMLKGNQGVMLVFFSDLFLDDDKVLEKL-PL 301
Query: 452 ITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN 511
+ S + F P + + + S R + L F GDI +
Sbjct: 302 LFSGYSDFPPAAFIFMG----NFSSTPYGADRHKRLKD------SFKALGDIMLNYPDLL 351
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
+ F+ P G + + P +P +TS+ + N T +NPCR+Q+C++EI+
Sbjct: 352 EKSQFFFVPGPLDPGPGDILPR---PPIPSCLTSDITSRISNVTFCSNPCRIQFCTREIV 408
Query: 572 VVREELLSKMCRN 584
V RE++L+KM R+
Sbjct: 409 VFREDILTKMSRH 421
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 56/155 (36%), Positives = 85/155 (54%), Gaps = 12/155 (7%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDAKS 71
D+IE EC + + ++ +I+AF+ P F Y+PD KKF + KL A + K+
Sbjct: 63 DVIETAVEECNQETDSDPDKALVLINAFETPPFTYNPDQKKFLPIPLPSMKLFASALQKT 122
Query: 72 KLFRERYNIIRQRTLRHSLFN------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMI 125
K+FRERYN+I QRT+RH LF+ + +L +EYL+S + + K +VLGM+
Sbjct: 123 KVFRERYNLIYQRTVRHHLFSPPVVGAAGSSKGPKFRLHTIEYLLSSSGLPDKIIVLGML 182
Query: 126 SQLKE-NITTSGLLGKHQSPHLNL-LCLIWVKIFI 158
QL+E L GK + L+L CL +F+
Sbjct: 183 IQLRERKFYLEDLTGKIE---LDLSACLFHTGLFV 214
>gi|345489517|ref|XP_001602987.2| PREDICTED: DNA polymerase epsilon subunit 2 [Nasonia vitripennis]
Length = 521
Score = 226 bits (577), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 148/474 (31%), Positives = 241/474 (50%), Gaps = 45/474 (9%)
Query: 199 LVPLILHPVIPVSNREQNNIMNWLKLSSECCRTE--INSEEQIFSVISAFDIPQFDYDPD 256
+V IL +P + E NI LK EC + E + E + +VI F +P+ YD +
Sbjct: 47 VVEQILTQNLPTAQVELENIKQALK---ECVKPESTLKESESVLNVIDVFTVPKVVYDLN 103
Query: 257 LKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN---PNADSVKLDWVE 313
KK+ L +L D+ KS +F+ER +++ RTL+H+ F + ++L +E
Sbjct: 104 KKKYVLQKINEELFPDAKYKSLVFKERLDLLWYRTLKHATFAPSKFGKTEENKLQLVPIE 163
Query: 314 YLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGH 373
YL+S + V+G+++QLKE +Y+LED G V+++L + S IV+ +G
Sbjct: 164 YLLSESKTKD-VCVMGLLAQLKEGQYYLEDYGGSVKINLKEGS----------IVVAKGR 212
Query: 374 YKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVI 433
Y D +L V+ + FPPPE S++SR FG+ N +GG P+ LK ++ E N+ ++
Sbjct: 213 YIDGVLRVENIDFPPPEVSESSRANFGDANTFGGSHPILLKLSEKLKAYEDANKANFLIF 272
Query: 434 LSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRN 493
+S+ +DN+ + N + S + P + + S + + +E K+
Sbjct: 273 VSEFWVDNEAILNKF-KVCMSGYSDTPPVAFVICGHFLSSPASMDSVKKLKEGFKKLAGM 331
Query: 494 CIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVL-SPALPKFITSEFQGFVP 552
+FP I +H F+ VP + K+L P LPK+I +F VP
Sbjct: 332 ITEFPL---IHQHTE---------FIFVPGPF--DLSAPKILPRPPLPKYIMEDFMKVVP 377
Query: 553 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP-----EEGD-----ISKHFVRTL 602
+ +ATNPCR+QYC++EI+V RE +LSK+ RN + +P E G+ + + F R++
Sbjct: 378 KTRLATNPCRIQYCTKEIVVFRENMLSKLSRNTLYYPKTEIDENGEDRGQKVYESFARSI 437
Query: 603 VSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+ Q L L ++ PVYW AL LYP PD+++ D Y +C INP
Sbjct: 438 IRQSHLAPLLFSVIPVYWQYDQALQLYPTPDVIVAADDFQPYKTTYYNCQVINP 491
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 3 LHRDNPSCTYDL--IEFTTNECCRTE--INSEEQIFSVISAFDIPQFDYDPDLKKFKLVD 58
L ++ P+ +L I+ EC + E + E + +VI F +P+ YD + KK+ L
Sbjct: 52 LTQNLPTAQVELENIKQALKECVKPESTLKESESVLNVIDVFTVPKVVYDLNKKKYVLQK 111
Query: 59 KKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNI---NPNADSVKLDWVEYLMSLTNV 115
+L D+ KS +F+ER +++ RTL+H+ F + ++L +EYL+S +
Sbjct: 112 INEELFPDAKYKSLVFKERLDLLWYRTLKHATFAPSKFGKTEENKLQLVPIEYLLSESKT 171
Query: 116 NHKTVVLGMISQLKEN 131
V+G+++QLKE
Sbjct: 172 KD-VCVMGLLAQLKEG 186
>gi|307171610|gb|EFN63395.1| DNA polymerase epsilon subunit 2 [Camponotus floridanus]
Length = 490
Score = 217 bits (553), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 143/440 (32%), Positives = 221/440 (50%), Gaps = 53/440 (12%)
Query: 222 LKLSSECC--RTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL 279
+KL+ E C ++ E +F+VIS +DIP+ YD KKF + L ++ KS +
Sbjct: 67 IKLAIEECVEPNKLKDTETVFNVISGYDIPKIKYDICKKKFTI--DNENLYPETQYKSLI 124
Query: 280 FRERYNIIRQRTLRHSLFNNIN---PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
F+ R+ ++ +TLRH F + AD + +EYL+S +LK
Sbjct: 125 FKHRFEMVWYKTLRHKQFQSSKFEKQQADKTNIIPIEYLLS---------------ELKT 169
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
R F + E CIV+V G YKD +LHV+ + FPP E+S++ R
Sbjct: 170 GRDFQD-----------------TFIMEGCIVIVNGVYKDDVLHVENVNFPPIESSESMR 212
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
FG+ N +GGP +SLK ++ E+N+ + MI+ ++++ LD + N L +F T
Sbjct: 213 SDFGDTNTFGGPHNLSLKMSEKLQIHEENDPDGMIIFIAELWLD---MPNVLQKFKTV-L 268
Query: 457 QGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
+G+ +A C + S V + L +N + K SK
Sbjct: 269 EGYTDYPPIAFVLCG-HFLSFPTNVTSPQALITGFKNLADVIAQYPNVKESSK------- 320
Query: 517 IFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
F+ VP + G+ P K I E VPN+ TNPCR+QYC++EI+++RE+
Sbjct: 321 -FVFVPGPHDLGSPKILPKPPLP-KCIVEEVTKLVPNAIFTTNPCRIQYCTKEIVILRED 378
Query: 577 LLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI 636
+L+KMCRN ++FP+E KHF +T+VSQ L +PL + P+YW AL ++P PDL++
Sbjct: 379 MLTKMCRNALRFPKEEHFFKHFAKTIVSQSHLTPVPLQVVPIYWRYDHALQVFPTPDLIV 438
Query: 637 LGDQLNAYTIQNTDCIFINP 656
+ D YT DC INP
Sbjct: 439 IADNFGTYTTDYADCYVINP 458
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/110 (30%), Positives = 57/110 (51%), Gaps = 6/110 (5%)
Query: 6 DNPSCTYDLIEFTTNECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLC 64
++P + + I+ EC ++ E +F+VIS +DIP+ YD KKF + L
Sbjct: 58 NDPHVSAEHIKLAIEECVEPNKLKDTETVFNVISGYDIPKIKYDICKKKFTI--DNENLY 115
Query: 65 ADSDAKSKLFRERYNIIRQRTLRHSLFNNI---NPNADSVKLDWVEYLMS 111
++ KS +F+ R+ ++ +TLRH F + AD + +EYL+S
Sbjct: 116 PETQYKSLIFKHRFEMVWYKTLRHKQFQSSKFEKQQADKTNIIPIEYLLS 165
>gi|241816109|ref|XP_002414662.1| DNA polymerase epsilon subunit B, putative [Ixodes scapularis]
gi|215508873|gb|EEC18327.1| DNA polymerase epsilon subunit B, putative [Ixodes scapularis]
Length = 482
Score = 214 bits (545), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 146/470 (31%), Positives = 240/470 (51%), Gaps = 50/470 (10%)
Query: 216 NNIMNWLKLS------------SECC-----RTEINSEEQIFSVISAFDIPQFDYDPDLK 258
NNI+ WL+ ++C R E +S + +V+ AF + D K
Sbjct: 4 NNILTWLQEQRLESALVNQQTLAKCIQEWSHRGEEDSHSREVTVVDAFQLSPLSVD--RK 61
Query: 259 KFKLVDKKR--KLCADSDAKSKLFRERYNIIRQRTLRHSLF-------NNINPNADSVKL 309
KF D R KL DSD+K+ LF+ERY ++ Q+T RH F ++ S +L
Sbjct: 62 KFLPRDGARSPKLFGDSDSKAFLFQERYCLVLQKTARHPCFATKTCRVSSSEETGSSFEL 121
Query: 310 DWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVL 369
VE L L ++ + VVLGM++Q ++ +YFLEDPTG V +D+S+ ++ GL+TE+ VL
Sbjct: 122 RNVEQL--LGTISERVVVLGMLTQFEQGKYFLEDPTGSVAVDVSKATFTEGLFTESSFVL 179
Query: 370 VEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENA 429
EG Y+D + ++A+G PP E + + Y G+ I+ S + K R+ ++E +A
Sbjct: 180 AEGLYEDSVFRIEAIGLPPVEPASETLKYLGSTTIF---SKLPEKVRTRL-EIEDLPPDA 235
Query: 430 MIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 489
M+V LSDV LD+ KV + L Q +A N +++ + E K
Sbjct: 236 MMVFLSDVWLDSAKVLDKLRVLFAGYSQAPPTCFVLAGNFLSRPMGTRKDAALLAECFKK 295
Query: 490 MCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQG 549
+ ++FP+ + S+ F+++P G +++ + P LP+ + EF
Sbjct: 296 LADLVLEFPQLLEHSQ------------FVLLPGPMDPG-LSNILPRPGLPRTLVEEFTK 342
Query: 550 FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP-EEG--DISKHFVRTLVSQG 606
V +A+NPCR+ +E+++ RE+ +++ CRN + P ++G D+ + + + L S
Sbjct: 343 KVSRCHLASNPCRLLLGGREVVLFREDGVARACRNALHLPWQKGGLDVPQLYTKCLASNA 402
Query: 607 TLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
L L L + PVYW AL L PLPD V L D + +++ DC+F NP
Sbjct: 403 HLCPLNLGVSPVYWEWDFALWLLPLPDAVALADSHDPFSVVQGDCLFFNP 452
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 61/117 (52%), Gaps = 13/117 (11%)
Query: 24 RTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR--KLCADSDAKSKLFRERYNII 81
R E +S + +V+ AF + D KKF D R KL DSD+K+ LF+ERY ++
Sbjct: 35 RGEEDSHSREVTVVDAFQLSPLSVD--RKKFLPRDGARSPKLFGDSDSKAFLFQERYCLV 92
Query: 82 RQRTLRHSLF-------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
Q+T RH F ++ S +L VE L L ++ + VVLGM++Q ++
Sbjct: 93 LQKTARHPCFATKTCRVSSSEETGSSFELRNVEQL--LGTISERVVVLGMLTQFEQG 147
>gi|299470367|emb|CBN78416.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 518
Score = 211 bits (538), Expect = 9e-52, Method: Compositional matrix adjust.
Identities = 139/449 (30%), Positives = 233/449 (51%), Gaps = 49/449 (10%)
Query: 231 TEINSEEQIFSVIS-----AFDIPQFDYDPDLKKFKLVD---KKRKLCADSDAKSKLFRE 282
++ S EQ + S AF P+ +DP L D +KR + +++K++++RE
Sbjct: 71 ADLTSREQDLADSSTQMQNAFVRPRLYFDPVRNTLLLEDAGTRKRSMHGPAESKARMYRE 130
Query: 283 RYNIIRQRTLRHSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYF 340
R+ ++RQR RH LF P +S + ++++ L SL +LGM++Q +E +YF
Sbjct: 131 RFLMVRQRVQRHDLFRP--PIIESSRREYIKLSPLDSLVGSADLRWLLGMLTQPEEGKYF 188
Query: 341 LEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG 400
LED + LDLS GL+TE+C+V+VEG + V +GFPP EA ++S G
Sbjct: 189 LEDEVTRLPLDLSNAHKTEGLFTEHCVVIVEGKMTAGVFQVAMVGFPPIEAREDSLRALG 248
Query: 401 NQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGF- 459
+++G + V+ + + RM ++E +AM VI+SDV+LD +V E + + F GF
Sbjct: 249 RADLFG--TGVNPQQMERMRQLELKATDAMFVIVSDVNLDKPQV----MEKLEALFDGFQ 302
Query: 460 ----VPNSTMATNPCRVQYCSQEILVVREEL------LSKMCRNCIKFPEEGDISKHVSK 509
P+ + N +CS I + + +C+ +KFP+ +K
Sbjct: 303 YAQPPPHFVLMGN-----FCSSPITHAADSVAQAVARFDSLCKLILKFPDLASSAK---- 353
Query: 510 NNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQE 569
F+ VP G + P LP + T + + +++ ATNPCR+++ +QE
Sbjct: 354 --------FVFVPGPQDPGA-GDTLPRPPLPAYFTQSLRENLKHASFATNPCRLRFFTQE 404
Query: 570 ILVVREELLSKMCRNCIKFPEEG--DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALS 627
++ R+++L KM R+ + P + D+++H +TL+ QG L LPL+ P++W ALS
Sbjct: 405 MVFFRDDILKKMQRHALFPPSDPDMDVTEHCTKTLLHQGHLCPLPLSARPIHWELDDALS 464
Query: 628 LYPLPDLVILGDQLNAYTIQNTDCIFINP 656
LYPLP + +L D+ Y DC +NP
Sbjct: 465 LYPLPHVAVLADRTEQYRWLLNDCCSLNP 493
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 12/129 (9%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVIS-----AFDIPQFDYDPDLKKFKLVD---KKRKLC 64
++++ T ++ S EQ + S AF P+ +DP L D +KR +
Sbjct: 59 NVVDVDTVSAVVADLTSREQDLADSSTQMQNAFVRPRLYFDPVRNTLLLEDAGTRKRSMH 118
Query: 65 ADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVL 122
+++K++++RER+ ++RQR RH LF P +S + ++++ L SL +L
Sbjct: 119 GPAESKARMYRERFLMVRQRVQRHDLFR--PPIIESSRREYIKLSPLDSLVGSADLRWLL 176
Query: 123 GMISQLKEN 131
GM++Q +E
Sbjct: 177 GMLTQPEEG 185
>gi|328698886|ref|XP_001952286.2| PREDICTED: DNA polymerase epsilon subunit 2-like [Acyrthosiphon
pisum]
Length = 593
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 158/515 (30%), Positives = 258/515 (50%), Gaps = 56/515 (10%)
Query: 165 FIILIISLCSFSFNSSQVPTDVQG--PVTAFETYHNLVPLILHPVIPVSNREQNNIMNWL 222
FI+ SL F+ VQ P+ + E + I+ + VS+ NI+ +
Sbjct: 10 FIVSTFSLNGFTIQERACAYLVQQLEPLESREDRDKWLDKIVD-YVRVSSTNDGNIVTYE 68
Query: 223 KLSSE---CCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL 279
LS CC +I ++E I V A+ +P++ Y P KKF+ + + + D+ +K
Sbjct: 69 LLSKALKFCCNLQILNDEDILHVTPAYKLPRYRYCPTTKKFQRIKSEISMFGDAQSKIAQ 128
Query: 280 FRERYNIIRQRTLRHSLFNNI---NPNADSVKLDWVEYLMSL--------TNVNHKTVVL 328
+ +RY +IRQR R ++ P K+ V+YL+S ++ ++ ++L
Sbjct: 129 YVDRYTVIRQRMARIKTTSDGTLNQPLTIGDKIRDVDYLLSSGACRKFDHSSKSNSILLL 188
Query: 329 GMISQLKE-NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHY--KDQILHVDALG 385
G++ QLKE R++LEDPTG + LD++ T + G +TENC VL EG Y ++ V +
Sbjct: 189 GVLVQLKEGGRHYLEDPTGAIPLDITATDFQKGYFTENCCVLAEGRYCSDRRVFFVTNMA 248
Query: 386 FPPPEASKNSRLYFGNQNIWGGPSPVSLKSVN-RMTKMEKNNENAMIVILSDVHLDNDKV 444
PP E ++ S++YFG + + + ++LKS N ++ + EK ++N MIV +SDV LD+ KV
Sbjct: 249 LPPCERTEISKIYFGESSNFSDSNDLNLKSCNPKLLEYEK-SKNRMIVFVSDVFLDDPKV 307
Query: 445 RNNLCEFITSEFQGFVPNSTMATN---PCRV--QYCSQEILVVREELLSKMCRNCIKFPE 499
+ S F P + + CR+ +QE+ +L + N
Sbjct: 308 LRKFHTLLNS-FNDLAPVAIVMMGDYLSCRIPSHAYAQELKTHLNQLGHFLHDNTPV--- 363
Query: 500 EGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVL-SPALPKFITSEFQGFVPNSTMAT 558
+ KH + L P G + +L P +P+F+T EF+ VP T
Sbjct: 364 ---LCKHTM-------FVLLSGPGDRYSGAAGASILPRPLIPEFLTEEFRRLVPRCVFTT 413
Query: 559 NPCRVQYCSQEILVVREELLSK-----------MCRNCIKFPEEG--DISKHFVRTLVSQ 605
NPCR+QYC+Q+I ++R + L K M RN E DI K++++TL SQ
Sbjct: 414 NPCRMQYCTQQIHIIRADGLMKKTANYDIRHGSMDRNKSTSATESDDDIIKNYIKTLESQ 473
Query: 606 GTLVSLPLNLCPVYWSQYG-ALSLYPLPDLVILGD 639
L+++PL++CP YW +LSLYP+PD+V + D
Sbjct: 474 SHLITVPLDVCPTYWPLASHSLSLYPMPDVVCIAD 508
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 68/132 (51%), Gaps = 11/132 (8%)
Query: 11 TYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAK 70
TY+L+ CC +I ++E I V A+ +P++ Y P KKF+ + + + D+ +K
Sbjct: 66 TYELLSKALKFCCNLQILNDEDILHVTPAYKLPRYRYCPTTKKFQRIKSEISMFGDAQSK 125
Query: 71 SKLFRERYNIIRQRTLRHSLFNNI---NPNADSVKLDWVEYLMSL--------TNVNHKT 119
+ +RY +IRQR R ++ P K+ V+YL+S ++ ++
Sbjct: 126 IAQYVDRYTVIRQRMARIKTTSDGTLNQPLTIGDKIRDVDYLLSSGACRKFDHSSKSNSI 185
Query: 120 VVLGMISQLKEN 131
++LG++ QLKE
Sbjct: 186 LLLGVLVQLKEG 197
>gi|320163097|gb|EFW39996.1| DNA polymerase epsilon subunit 2 [Capsaspora owczarzaki ATCC 30864]
Length = 599
Score = 210 bits (535), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 225/447 (50%), Gaps = 44/447 (9%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
+S +++ + I AF +P+ Y+ D K F+LV L +D+ +K+ ++ +R+ +++QRTLR
Sbjct: 140 SSMDRLLTCIDAFSVPKLAYNADRKTFQLVPSNPMLHSDAASKAAIYADRFALLKQRTLR 199
Query: 294 HSLF------NNINPNADSVKLDWVEYLMSLTNVN----------HKTVVLGMISQLKEN 337
F ++ + + + SLT ++ + GM++Q++E
Sbjct: 200 AEHFLQPIVVTHVPSSGADDAFEQKQERFSLTPLDALIGAAEKDLQNLMTFGMLTQMEEG 259
Query: 338 RYFLEDPTGIVQLDLSQ-TSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+ FLED ++LDLSQ G++TENC VL EG ++L +G P E+ + +R
Sbjct: 260 KLFLEDAGSTIELDLSQLEEVLTGIFTENCFVLTEGEVVGKVLKARWIGLPASESRETAR 319
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDN----DKVRNNLCEFI 452
F N +GG S++ + +E+ NE+A V+LSDV LD +K+R +
Sbjct: 320 KNFSAVNFFGG--NYSIQDAPQYKVLERQNEDAFFVVLSDVWLDQPKTMEKLRVLFTGYA 377
Query: 453 TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
+S F+ + P + + + + C+ + G + S+
Sbjct: 378 SSPPVAFILIGDFTSPPYGRNH-------------APLLKQCLT--QLGKLVAEFSQIKR 422
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+ +F+ G + + P L IT F+ VPN +NPCR++YC+QEI++
Sbjct: 423 KSRFVFVPGNNDPGPGNILPR---PGLSASITEGFRELVPNVEFGSNPCRLRYCTQEIVI 479
Query: 573 VREELLSKMCRNCI-KFPEEGDIS--KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLY 629
RE+LLSKM RNCI PE+ D+S F +T++ Q L LPL++ PVYW AL +Y
Sbjct: 480 FREDLLSKMRRNCILPTPEKSDVSLAAAFTKTVIDQAHLCPLPLHVRPVYWDFDHALRIY 539
Query: 630 PLPDLVILGDQLNAYTIQNTDCIFINP 656
P PD++IL D+ Y + C+ +NP
Sbjct: 540 PAPDVLILADKAEPYDHRYNGCVCLNP 566
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/127 (24%), Positives = 66/127 (51%), Gaps = 9/127 (7%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
+S +++ + I AF +P+ Y+ D K F+LV L +D+ +K+ ++ +R+ +++QRTLR
Sbjct: 140 SSMDRLLTCIDAFSVPKLAYNADRKTFQLVPSNPMLHSDAASKAAIYADRFALLKQRTLR 199
Query: 88 HSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKH 141
F ++ + + + SLT ++ ++G + +N+ T G+L +
Sbjct: 200 AEHFLQPIVVTHVPSSGADDAFEQKQERFSLTPLD---ALIGAAEKDLQNLMTFGMLTQM 256
Query: 142 QSPHLNL 148
+ L L
Sbjct: 257 EEGKLFL 263
>gi|427785195|gb|JAA58049.1| Putative dna polymerase epsilon subunit b [Rhipicephalus
pulchellus]
Length = 531
Score = 207 bits (527), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/417 (32%), Positives = 214/417 (51%), Gaps = 37/417 (8%)
Query: 268 KLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN--PNADSVKLDWVEYLMSLTNVNHKT 325
+L D+ AK+ FRERY ++ Q+T RH F++ + P A L +E+L+ T +
Sbjct: 118 RLFGDAGAKAFFFRERYQLVLQKTARHHCFSSRSRLPTASGFDLRPIEHLLGTTG--ERV 175
Query: 326 VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALG 385
VVLGM+ QL+E YFLED TG V++D S T + L+ EN VL EG Y+D + HVDA+G
Sbjct: 176 VVLGMLCQLEEGNYFLEDTTGSVKIDTSGTKFTADLFVENSFVLAEGCYEDMVFHVDAMG 235
Query: 386 FPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNN--ENAMIVILSDVHLDNDK 443
PP E++ + Y G +I+ P L+ T++E ++ +NA+ V+LSDV LD K
Sbjct: 236 LPPIESASETLKYMGGASIF-DKFPEKLR-----TQLELSDVPDNALFVLLSDVWLDQPK 289
Query: 444 VRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDI 503
V ++L T QG +A N Q+ V+ E + +FP +
Sbjct: 290 VLSHLRVLFTGFAQGAPACFVLAGNFLSRSTGLQKDRVLLREGFKALAEMLNEFPL---L 346
Query: 504 SKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQ---------GFVPNS 554
KH F+ +P G +++ + P LP +T +
Sbjct: 347 VKHSR---------FIFIPGSRDPG-LSNVLPRPGLPHQVTEPLRSRGSSEAENALAERC 396
Query: 555 TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG---DISKHFVRTLVSQGTLVSL 611
A+NPCR+ YC +++++ R++ L+K CRN + P + D+++ + R+L + L +
Sbjct: 397 HWASNPCRLLYCGRQVVLWRQDGLAKACRNAVHRPWDKTGLDLAQVYTRSLAANAHLSPV 456
Query: 612 PLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
+ PVYW AL L+PLPD V+ D +A+T+++ C+F NP AF+V
Sbjct: 457 SPAVTPVYWEWDFALWLHPLPDAVVCFDACDAFTVEHAGCVFFNPGSFPKTDYAFKV 513
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 9/133 (6%)
Query: 6 DNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF---KLVDKKR- 61
D P T D + E R++ + + V AF + Y + +KF +L
Sbjct: 57 DGPFLTKDDLLGCIREFERSDNDGTDVRLLVADAFTLAPLTYCQERRKFVPRELAGHSGP 116
Query: 62 -KLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN--PNADSVKLDWVEYLMSLTNVNHK 118
+L D+ AK+ FRERY ++ Q+T RH F++ + P A L +E+L+ T +
Sbjct: 117 PRLFGDAGAKAFFFRERYQLVLQKTARHHCFSSRSRLPTASGFDLRPIEHLLGTT--GER 174
Query: 119 TVVLGMISQLKEN 131
VVLGM+ QL+E
Sbjct: 175 VVVLGMLCQLEEG 187
>gi|307203235|gb|EFN82390.1| DNA polymerase epsilon subunit 2 [Harpegnathos saltator]
Length = 487
Score = 207 bits (526), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 134/434 (30%), Positives = 216/434 (49%), Gaps = 55/434 (12%)
Query: 227 ECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYN 285
EC ++ + E +F+VI ++IP+ YD KK+ ++D K+ + KS +F+ R+
Sbjct: 73 ECLEPNKLKNTETVFNVIDGYNIPKITYDICKKKY-IIDS-NKIYPEVQCKSLIFKHRFE 130
Query: 286 IIRQRTLRHSLFNNIN---PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLE 342
++ +TLRH F + AD + L +EYL+S + ++
Sbjct: 131 MVWYKTLRHKQFLSSKFERQPADMINLIPIEYLLSELKTGNDAFIM-------------- 176
Query: 343 DPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQ 402
E C+V+ G YKD ILHV+ + FPP E+ ++ R FG+
Sbjct: 177 ---------------------EGCMVIANGMYKDDILHVENISFPPIESWESFRSDFGDA 215
Query: 403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN 462
N +GGP SLK ++ EKNNE+ +IV ++++ LD N+ + +G++
Sbjct: 216 NTFGGPHSTSLKMSEKLQVFEKNNEDGIIVFIAELWLD----FPNVLQKFRMILEGYMDY 271
Query: 463 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP 522
+A C + S + + L R+ +K + K SK F+ VP
Sbjct: 272 PPIAFVLCG-HFLSFPTNMTSIQALITGFRDLVKIIVQYTNVKETSK--------FVFVP 322
Query: 523 KIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMC 582
+ G+ P K I E + N+ TNPCR+QYC++EI+V+RE++L+KMC
Sbjct: 323 GPHDLGSPKILPKPPLP-KCIIDEVTKSISNAIFTTNPCRIQYCTKEIVVLREDMLTKMC 381
Query: 583 RNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN 642
RN ++FP+E D KHF R ++SQ L+ +PL + PVYW AL ++P PDL+++ D
Sbjct: 382 RNALRFPKEEDFFKHFARAIISQSHLIPVPLEVVPVYWKYDHALQIFPTPDLIVVADNFE 441
Query: 643 AYTIQNTDCIFINP 656
YT +DC INP
Sbjct: 442 TYTASYSDCYVINP 455
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/110 (30%), Positives = 60/110 (54%), Gaps = 6/110 (5%)
Query: 6 DNPSCTYDLIEFTTNECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLC 64
+NP T + I+ EC ++ + E +F+VI ++IP+ YD KK+ ++D K+
Sbjct: 58 NNPHVTAEHIKSAIEECLEPNKLKNTETVFNVIDGYNIPKITYDICKKKY-IIDS-NKIY 115
Query: 65 ADSDAKSKLFRERYNIIRQRTLRHSLFNNIN---PNADSVKLDWVEYLMS 111
+ KS +F+ R+ ++ +TLRH F + AD + L +EYL+S
Sbjct: 116 PEVQCKSLIFKHRFEMVWYKTLRHKQFLSSKFERQPADMINLIPIEYLLS 165
>gi|224007899|ref|XP_002292909.1| hypothetical protein THAPSDRAFT_263717 [Thalassiosira pseudonana
CCMP1335]
gi|220971771|gb|EED90105.1| hypothetical protein THAPSDRAFT_263717 [Thalassiosira pseudonana
CCMP1335]
Length = 504
Score = 202 bits (515), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 139/445 (31%), Positives = 220/445 (49%), Gaps = 34/445 (7%)
Query: 226 SECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYN 285
++ R + E+ ++ AF P+ +YD K F LV+ + +C ++ K +F +RY+
Sbjct: 66 ADMSRGAKDVTEEAVQLLDAFKTPRLEYDSMRKVFSLVEGGKSVCGEAVDKVDMFSQRYS 125
Query: 286 IIRQRTLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFL 341
+I QR LR +F + L VE L+ + + +LGMI Q++E +Y+L
Sbjct: 126 LIHQRILRQDIFQPKLITARGGGTTHTLTPVESLLGRSG---RRFLLGMIVQVEEGKYYL 182
Query: 342 EDPTGIVQLDLSQTS-YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG 400
ED T V L+ SQ S G TEN +VLVEG D +LHV +G P E +S G
Sbjct: 183 EDHTSQVLLNFSQASLLTDGFVTENSVVLVEGEAIDGVLHVHHMGNPIVENRSDSIKAIG 242
Query: 401 NQNIWGGPSPVSLKSVNRMTKME-KNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGF 459
QN S SL + ++ E K+ ++ M V+LSDVHLD+ V + E + + F
Sbjct: 243 LQNTDIFNSIGSLSELEKLRDQEMKHGQDGMFVVLSDVHLDSPAVIEKI-ELMLEGYSDF 301
Query: 460 VP------NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGE 513
P + P + ++ E L+ + KFP N
Sbjct: 302 TPLPIFVFMGNFTSKPLSGASDGTKAMIGYFEDLAAV---ITKFP------------NIA 346
Query: 514 KDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
+ F+ VP G +T + +P F TS + V ++ A+NPCR+++ S+EI+
Sbjct: 347 AEGRFVFVPGPNDPG-ITGVLPRGPIPNFFTSSLRSKVKHAVFASNPCRMRFFSKEIVFF 405
Query: 574 REELLSKMCRNCIKFPEEG--DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
R++L+ KM R+C+ P +S+ V+T++ QG L LPL+ P+YW AL LYP
Sbjct: 406 RDDLVGKMRRHCLLQPRSSVHKLSQFAVKTVLDQGHLSPLPLSASPIYWQHDHALRLYPF 465
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PD +I+GD+++ Y +C INP
Sbjct: 466 PDALIVGDRVDQYYENYEECDAINP 490
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 10 CTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDA 69
T DL+E + R + E+ ++ AF P+ +YD K F LV+ + +C ++
Sbjct: 56 VTTDLLEDVVADMSRGAKDVTEEAVQLLDAFKTPRLEYDSMRKVFSLVEGGKSVCGEAVD 115
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMI 125
K +F +RY++I QR LR +F + L VE L+ + + +LGMI
Sbjct: 116 KVDMFSQRYSLIHQRILRQDIFQPKLITARGGGTTHTLTPVESLLGRSG---RRFLLGMI 172
Query: 126 SQLKEN 131
Q++E
Sbjct: 173 VQVEEG 178
>gi|301114509|ref|XP_002999024.1| DNA polymerase epsilon subunit, putative [Phytophthora infestans
T30-4]
gi|262111118|gb|EEY69170.1| DNA polymerase epsilon subunit, putative [Phytophthora infestans
T30-4]
Length = 982
Score = 198 bits (504), Expect = 8e-48, Method: Compositional matrix adjust.
Identities = 142/456 (31%), Positives = 226/456 (49%), Gaps = 51/456 (11%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKL-VDKKRKLCADSDAKSKLFRERYNIIRQRTL 292
N EQI V AFD P+ ++ + L D R+L A +A+ +L R R+ + R
Sbjct: 527 NDYEQI-QVFGAFDTPRLHFNMHNNSYDLRADTHRRLHAGPEARIQLLRNRFMSVDLRVK 585
Query: 293 RHSLFNNINPN-ADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
R+ LF ++ A++++ + + SL V+ V+GM+ Q + R++LED T + +D
Sbjct: 586 RNRLFAPLSAAVANTIEYMELSRIESLLGVSGVRRVIGMLGQDERKRFYLEDFTSRIIID 645
Query: 352 LSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
L+ +Y GL+T NC+VLVEG D +LHV ++GFPPPE + S G + G V
Sbjct: 646 LTNAAYTDGLFTINCVVLVEGEVIDDVLHVQSMGFPPPETKEASLEVLGGIDPLG--VEV 703
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG--------FVPNS 463
S + ++ ++E ++ +A ++LSDVHLD+ V + L E FQG F+
Sbjct: 704 SAQQREQIRELEASDHHAAFIVLSDVHLDDPLVMSKLDEL----FQGLESVQPTLFILMG 759
Query: 464 TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPK 523
+ S + +R E L ++ +K+P + S+ F++VP
Sbjct: 760 DFMSTSIGGGAGSNSLQDLR-EYLEELGSLILKYPGIAENSR------------FILVPG 806
Query: 524 IYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR 583
G+ + P LP T E VPN T +TNPCR++Y +Q+I++ R++L KM R
Sbjct: 807 PNDPGSSRAFPRHP-LPDLCTRELIRKVPNVTCSTNPCRIRYYTQDIVIFRDDLQQKMQR 865
Query: 584 NCIKFP---EEG----------------DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYG 624
+ I P E+G DISKH +T++ Q L LPL P+ W
Sbjct: 866 HAILPPTPSEQGEAMDEDGETVHSVSQTDISKHLAKTVIDQAHLCPLPLMANPINWDFDS 925
Query: 625 ALSLYPLPDLVILGDQLNAYTIQNTDCIFINPV-FH 659
+L L+P PD++ILGD Y + + +P FH
Sbjct: 926 SLQLFPAPDVLILGDSTEQYQLGYSSIGVFHPGPFH 961
>gi|168036141|ref|XP_001770566.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678087|gb|EDQ64549.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 517
Score = 197 bits (502), Expect = 1e-47, Method: Compositional matrix adjust.
Identities = 139/437 (31%), Positives = 218/437 (49%), Gaps = 40/437 (9%)
Query: 238 QIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 297
++ V+ AF+IP+ +DP K L ++ AK+ +RER+ +++QR L+ F
Sbjct: 79 RVLQVVDAFNIPKICFDPARKILYTQPGNFPLHGEAQAKASFYRERFLLLQQRILKDKYF 138
Query: 298 ------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
+++ S + + L SL V+G+I Q+++ R+ LED + +V +D
Sbjct: 139 AKPAFEGHVSSQFGSCE---ITPLQSLVGCTGNRWVMGVILQVEDGRFHLEDMSAVVPVD 195
Query: 352 LSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSP 410
+S+ G +TEN +VL EG + + V +GFPP E + S ++ GP P
Sbjct: 196 ISEAKITAGFFTENSVVLAEGELLVNGVFKVYTMGFPPLERRQTSLRSAAGLSLLAGP-P 254
Query: 411 VSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS-EFQGFVPN-----ST 464
++++ R+ K+EK N M V+LSDV LD+++ L E + E VP+
Sbjct: 255 LTMEEFVRLEKLEKQAVNDMFVVLSDVWLDSEETMGKLEEVLDGYESMEVVPSLFVLLGN 314
Query: 465 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGD-ISKHVSKNNGEKDIIFLIVPK 523
+ PC + S + +RE+ F G I+ H +G + FL+VP
Sbjct: 315 FCSYPCNL--ASHDFAELREQ-----------FSRLGSLIASHPRIKDGSQ---FLLVPG 358
Query: 524 IYVEGTVTSKVL-SPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMC 582
G S VL PALPK+ T E VPN+ +NPCR+++ +Q+++V RE+L +M
Sbjct: 359 PGDPGP--SNVLPRPALPKYFTKEVLKHVPNAIFGSNPCRIRFYAQDLVVFREDLQYRMR 416
Query: 583 RNCIKFPEE---GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
R+CI P E D +H V T++ Q L LPL P+ WS ALSLYP PD +ILGD
Sbjct: 417 RSCICTPSEEETNDPFEHLVVTMLHQNHLCPLPLTTQPINWSFDHALSLYPTPDTIILGD 476
Query: 640 QLNAYTIQNTDCIFINP 656
+ I NP
Sbjct: 477 RAAQNVIAYMGVTCFNP 493
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 64/138 (46%), Gaps = 15/138 (10%)
Query: 6 DNPSCTYDLIEFTTNECCRTEINS------EEQIFSVISAFDIPQFDYDPDLKKFKLVDK 59
D+PS ++++ TT E E+ ++ V+ AF+IP+ +DP K
Sbjct: 47 DHPSLKSNMLDKTTVETIIAEVKGLDDHTQGRRVLQVVDAFNIPKICFDPARKILYTQPG 106
Query: 60 KRKLCADSDAKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLT 113
L ++ AK+ +RER+ +++QR L+ F +++ S + + L SL
Sbjct: 107 NFPLHGEAQAKASFYRERFLLLQQRILKDKYFAKPAFEGHVSSQFGSCE---ITPLQSLV 163
Query: 114 NVNHKTVVLGMISQLKEN 131
V+G+I Q+++
Sbjct: 164 GCTGNRWVMGVILQVEDG 181
>gi|218196149|gb|EEC78576.1| hypothetical protein OsI_18564 [Oryza sativa Indica Group]
gi|222630291|gb|EEE62423.1| hypothetical protein OsJ_17214 [Oryza sativa Japonica Group]
Length = 533
Score = 194 bits (494), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 133/438 (30%), Positives = 213/438 (48%), Gaps = 35/438 (7%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
S V+ +F +P+F YDP K F + + ++ K+ L+R+RY ++ QR R
Sbjct: 90 TSARSALRVVDSFVVPRFHYDPIKKVFYEHTSRLAIHGEAGDKAALYRDRYQVLLQRLAR 149
Query: 294 HSLFNNINPNADSVKLD----WVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
F+ P D+V + + + SL + ++G+ISQL+E +++LED TG V
Sbjct: 150 DIYFSK--PAFDTVMTEDDNCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVP 207
Query: 350 LDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGP 408
+DLS G + EN +++ EG + I V+ GFPP E + S + +GG
Sbjct: 208 IDLSNAKITSGFFVENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGG- 266
Query: 409 SPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC------EFITSEFQGFVPN 462
+ + R++ +EK N M VILSDV LDN + L + + + FV
Sbjct: 267 GVIPTEETVRLSTLEKKAMNDMFVILSDVWLDNYETMEKLGVVLDGYDSLEAVPSLFVLM 326
Query: 463 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP 522
+ PC + + S E L ++ L +M +++ ++ FL +P
Sbjct: 327 GNFCSRPCNLAFNSFEELRLQFGKLGEMI---------------AARSRLKEHSRFLFIP 371
Query: 523 KIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM 581
G SK L ALPK++T E Q +PN+ +NPCRV++ +QEI+ R++LL +M
Sbjct: 372 GPDDAGP--SKALPRCALPKYLTEELQKHIPNAIFVSNPCRVKFYTQEIVFFRQDLLYRM 429
Query: 582 CRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILG 638
R+C+ P E D +H V T+ Q L LPL + P+ WS L LYP P ++LG
Sbjct: 430 RRSCLIPPTTEETSDPFEHLVATITHQSHLCPLPLTVQPIIWSYDHCLRLYPTPHTIVLG 489
Query: 639 DQLNAYTIQNTDCIFINP 656
D+ + + T NP
Sbjct: 490 DKSDQKAFKYTGITCFNP 507
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
S V+ +F +P+F YDP K F + + ++ K+ L+R+RY ++ QR R
Sbjct: 90 TSARSALRVVDSFVVPRFHYDPIKKVFYEHTSRLAIHGEAGDKAALYRDRYQVLLQRLAR 149
Query: 88 HSLFNNINPNADSVKLD----WVEYLMSLTNVNHKTVVLGMISQLKEN 131
F+ P D+V + + + SL + ++G+ISQL+E
Sbjct: 150 DIYFS--KPAFDTVMTEDDNCEITSIQSLIGCTGRRWIMGVISQLEER 195
>gi|348684070|gb|EGZ23885.1| hypothetical protein PHYSODRAFT_478820 [Phytophthora sojae]
Length = 987
Score = 194 bits (493), Expect = 1e-46, Method: Compositional matrix adjust.
Identities = 140/460 (30%), Positives = 226/460 (49%), Gaps = 58/460 (12%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKL-VDKKRKLCADSDAKSKLFRERYNIIRQRTL 292
N EQI V AFD P+ ++ ++L D R+L A +++ +L R R+ + R
Sbjct: 531 NDYEQI-QVFGAFDTPRLHFNTHNNSYELKADAHRRLHAGPESRIQLLRNRFMSVDLRVK 589
Query: 293 RHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIV 348
R+ LF + + ++L +E L+ ++ V V+GM+ Q + R++LED T +
Sbjct: 590 RNRLFAPPSVAVANTTEYMELSRIESLLGVSGVRR---VIGMLGQDERKRFYLEDFTSRI 646
Query: 349 QLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGP 408
+DL+ +Y GL+T NC+VLVEG D +LHV ++GFPPPE + S G + G
Sbjct: 647 IVDLTNAAYTDGLFTINCVVLVEGEVIDDVLHVQSMGFPPPETKEASLEVLGGIDPLG-- 704
Query: 409 SPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG--------FV 460
VS + ++ ++E ++ +A ++LS V+LD+ +V + L E FQG F+
Sbjct: 705 VEVSAQQREQIRELEASDHHATFIVLSAVYLDDPQVMSKLDEL----FQGLESVQPTLFI 760
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLI 520
+ S + +R E L ++ +K+P + S+ F++
Sbjct: 761 LMGDFMSTSIGGGAGSNSLQDLR-EYLEELGNLILKYPGIAENSR------------FVL 807
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
VP G+ + P LP T E VPN T +TNPCR++Y +Q+I++ R++L K
Sbjct: 808 VPGPNDPGSSRAFPRHP-LPDLCTRELIRKVPNVTCSTNPCRIRYYTQDIVIFRDDLQQK 866
Query: 581 MCRNCIKFP-----------EEG---------DISKHFVRTLVSQGTLVSLPLNLCPVYW 620
M R+ I P E G DISKH +TL+ Q L LPL P+ W
Sbjct: 867 MQRHAILTPMPSEQEEAVMDESGEPAQSVSQTDISKHLAKTLIDQAHLCPLPLMANPINW 926
Query: 621 SQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPV-FH 659
+L L+P+PD++ILGD Y + + +P FH
Sbjct: 927 DFDSSLQLFPVPDVLILGDSTEQYQLGYSSVGVFHPGPFH 966
>gi|332018917|gb|EGI59463.1| DNA polymerase epsilon subunit 2 [Acromyrmex echinatior]
Length = 491
Score = 194 bits (492), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 132/440 (30%), Positives = 221/440 (50%), Gaps = 52/440 (11%)
Query: 222 LKLSSECCR--TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL 279
+K++ E C ++ E +F+VI ++IP+ YD KKF ++D + ++ KS +
Sbjct: 67 IKIAIEECLEPNKLKDTETVFNVIDGYNIPKIKYDISKKKF-VIDNENSY-PETQYKSLV 124
Query: 280 FRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLG---MISQLKE 336
F+ R+ + +TLRH F S K + + HKT ++ ++S+L+
Sbjct: 125 FKYRFEMAWYKTLRHKQFL-------SSKFEKQQ--------THKTNLIPIEYLLSELRT 169
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+ +D E IV+ G YKD +LHV + PP E+S++ R
Sbjct: 170 GNVYFQD----------------TFIMEGFIVIANGVYKDDVLHVKTIDLPPIESSESLR 213
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
FG+ N +GG +SLK ++ E+ N++ MIV ++++ LD V + L +F T
Sbjct: 214 SDFGDTNTFGGSHNISLKMSEKLQIHEETNQDGMIVFIAELWLD---VPHVLQKFKTI-L 269
Query: 457 QGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
G++ +A C + S + + L +N ++ I+++ S K
Sbjct: 270 DGYMDYPPIAFVLCG-HFLSFPTNITSAKTLITGFKNLVEI-----ITQYTSIKEFTK-- 321
Query: 517 IFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
F+ VP + G+ P K I E +PN+ TNPCR+QYC++EI+++RE+
Sbjct: 322 -FIFVPGPHDLGSPKILPKPPLP-KCIIEEVTKMIPNAIFTTNPCRIQYCTKEIVILRED 379
Query: 577 LLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI 636
+L+KMCRN + FP+E KHF + ++SQ L +PL + PVYW AL ++P PDL++
Sbjct: 380 MLTKMCRNALHFPKEEHFFKHFAKAIISQSHLTPVPLQVVPVYWKYDHALQIFPTPDLIV 439
Query: 637 LGDQLNAYTIQNTDCIFINP 656
+ D YT +DC INP
Sbjct: 440 IADNFETYTTNYSDCYVINP 459
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 46/87 (52%), Gaps = 3/87 (3%)
Query: 6 DNPSCTYDLIEFTTNECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLC 64
D+P + I+ EC ++ E +F+VI ++IP+ YD KKF ++D +
Sbjct: 58 DDPHVGAEHIKIAIEECLEPNKLKDTETVFNVIDGYNIPKIKYDISKKKF-VIDNENSY- 115
Query: 65 ADSDAKSKLFRERYNIIRQRTLRHSLF 91
++ KS +F+ R+ + +TLRH F
Sbjct: 116 PETQYKSLVFKYRFEMAWYKTLRHKQF 142
>gi|145361161|ref|NP_680197.2| DNA polymerase epsilon subunit B2 [Arabidopsis thaliana]
gi|63147392|gb|AAY34169.1| At5g22110 [Arabidopsis thaliana]
gi|332005601|gb|AED92984.1| DNA polymerase epsilon subunit B2 [Arabidopsis thaliana]
Length = 526
Score = 193 bits (490), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 129/415 (31%), Positives = 212/415 (51%), Gaps = 33/415 (7%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
++I AF +P+F YD KKF + ++ AK+ L+RER+ ++ QR R F+
Sbjct: 91 LAIIDAFLVPKFGYDSVKKKFNEHTSSLPIHGEASAKTALYRERFMLLSQRVSRAEHFSR 150
Query: 300 INPNADSVKLD--WVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSY 357
+A+ + + + + SL + + V+G+ISQL++ ++LED + V++DLS+
Sbjct: 151 PAFDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDGHFYLEDLSASVEIDLSKAKI 210
Query: 358 HPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSV 416
G +TEN I+L EG + + I V GFPP E + + +GG + ++ + +
Sbjct: 211 TTGFFTENTIILAEGEMQVNGIFQVITCGFPPLEDRDKTLKAHSEYDFFGGGT-LTKEEM 269
Query: 417 NRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-------FVPNSTMATNP 469
++ +E+ N VILSD+ LD+++V L E + F+ FV + P
Sbjct: 270 IKLADLERQAVNDTFVILSDIWLDDEEVMRKL-ETVLDGFESVETVPSLFVFMGNFCSRP 328
Query: 470 CRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGT 529
C + + S L E K+ R P + S+ FL +P E
Sbjct: 329 CNLSFGSYSSL---REQFGKLGRMIGNHPRLKENSR------------FLFIPG--PEDA 371
Query: 530 VTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF 588
S VL ALPK++T E + +PN+ ++NPCRV++ +QEI+ R++LL +M R+C+
Sbjct: 372 GPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSCLVT 431
Query: 589 P---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ 640
P E D KH V T+ Q L LPL + P+ W+ AL LYP P ++LGD+
Sbjct: 432 PSSEETNDPFKHLVYTITHQSHLCPLPLMVQPIIWNYDHALRLYPTPHTIVLGDK 486
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
++I AF +P+F YD KKF + ++ AK+ L+RER+ ++ QR R F+
Sbjct: 91 LAIIDAFLVPKFGYDSVKKKFNEHTSSLPIHGEASAKTALYRERFMLLSQRVSRAEHFSR 150
Query: 94 INPNADSVKLD--WVEYLMSLTNVNHKTVVLGMISQLKEN 131
+A+ + + + + SL + + V+G+ISQL++
Sbjct: 151 PAFDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDG 190
>gi|226531428|ref|NP_001147081.1| DNA polymerase epsilon subunit 2 [Zea mays]
gi|195607112|gb|ACG25386.1| DNA polymerase epsilon subunit 2 [Zea mays]
gi|414869832|tpg|DAA48389.1| TPA: DNA polymerase epsilon subunit 2 [Zea mays]
Length = 533
Score = 192 bits (489), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 138/442 (31%), Positives = 210/442 (47%), Gaps = 43/442 (9%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
S V+ AF +P+F YDP K F + + ++ K+ L+R+RY ++ QR R
Sbjct: 90 TSARSALRVVDAFLVPRFHYDPIKKVFYEHTGRLAVHGEAGDKASLYRDRYQVLLQRLSR 149
Query: 294 HSLFNNINPNADSVKLDW----VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
F+ P D+V + + + SL + ++G+ISQL+E +++LED TG V
Sbjct: 150 DKYFSK--PAFDTVATEHCSCEITSVQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVP 207
Query: 350 LDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNS-RLYFGNQNIWGG 407
+DLS G + EN +++ EG + I V+ GFPP E + S L G GG
Sbjct: 208 IDLSNAKITSGFFVENTVIVAEGELLSNGIFQVNTCGFPPLEDREASVSLLMGFDFFGGG 267
Query: 408 PSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC---------EFITSEFQG 458
P + R++ +EK N M VILSDV LDN + L E + S F
Sbjct: 268 VIPT--EETLRLSSLEKKAVNDMFVILSDVWLDNPETMEKLAVVLDGYDSVEVVPSLF-- 323
Query: 459 FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
V + PC + + S E L + L +M +++ ++ F
Sbjct: 324 -VLMGNFCSRPCNLAFNSFEELRFQFGKLGEMI---------------AARSRLKEHSRF 367
Query: 519 LIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREEL 577
L +P G SK L ALPK++ E Q +PNS +NPCRV++ +QEI+ R++L
Sbjct: 368 LFIPGPDDAGP--SKALPRCALPKYLIEELQKHIPNSIFVSNPCRVKFYTQEIVFFRQDL 425
Query: 578 LSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
L +M R+C+ P E D +H V T+ Q L LPL + P+ W+ L LYP P
Sbjct: 426 LYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHT 485
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
++LGD+ + T NP
Sbjct: 486 IVLGDKSEQKAFKYTGITCFNP 507
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
S V+ AF +P+F YDP K F + + ++ K+ L+R+RY ++ QR R
Sbjct: 90 TSARSALRVVDAFLVPRFHYDPIKKVFYEHTGRLAVHGEAGDKASLYRDRYQVLLQRLSR 149
Query: 88 HSLFNNINPNADSVKLDW----VEYLMSLTNVNHKTVVLGMISQLKEN 131
F+ P D+V + + + SL + ++G+ISQL+E
Sbjct: 150 DKYFS--KPAFDTVATEHCSCEITSVQSLIGCTGRRWIMGVISQLEER 195
>gi|225455720|ref|XP_002267181.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Vitis vinifera]
Length = 527
Score = 191 bits (486), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 129/434 (29%), Positives = 211/434 (48%), Gaps = 29/434 (6%)
Query: 235 SEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 294
S ++ AF + +F YDP K F + + D+ AKS L+R R+ ++ QR R
Sbjct: 87 STRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRLSRD 146
Query: 295 SLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDL 352
F+ + + E + SL K V+G+ISQL++ +FLED T V+++L
Sbjct: 147 QHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDGHFFLEDLTASVEINL 206
Query: 353 SQTSYHPGLYTENCIVLVEGH-YKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
S G ++EN I++ EG + D I V GFPP E S + +GG + +
Sbjct: 207 SNAKITTGFFSENTIIVAEGEMFLDGIFQVSTCGFPPLEDRDESLASLSGLDFFGGGT-L 265
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS-EFQGFVPN-----STM 465
+ + R+ +EK N M VILSDV LDN++ L + E VP+
Sbjct: 266 TREETLRLAGLEKKAVNDMFVILSDVWLDNEETMGKLATVLDGYENVEVVPSLFIFMGNF 325
Query: 466 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIY 525
++PC + + S L ++ L +M + + E +F+ P
Sbjct: 326 CSHPCNLSFHSFSSLRLQFGKLGQMIASHPRLKEH-------------SQFLFIPGPDDA 372
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNC 585
TV + ALP ++T EF+ ++PN+ ++NPCR+++ +QEI++ R++LL +M R+C
Sbjct: 373 GPSTVLPRC---ALPNYLTEEFKKYIPNAIFSSNPCRIKFYTQEIVLFRQDLLYRMRRSC 429
Query: 586 IKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN 642
+ P E D +H V T+ Q L LPL++ P+ W+ L LYP P ++LGD+
Sbjct: 430 LVPPSPEETSDPFEHLVATITHQSHLCPLPLSVQPIIWNYDHCLHLYPNPHTIVLGDRSE 489
Query: 643 AYTIQNTDCIFINP 656
+ T + NP
Sbjct: 490 QKAFKYTGIMCFNP 503
Score = 43.9 bits (102), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 29 SEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 88
S ++ AF + +F YDP K F + + D+ AKS L+R R+ ++ QR R
Sbjct: 87 STRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRLSRD 146
Query: 89 SLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
F+ + + E + SL K V+G+ISQL++
Sbjct: 147 QHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDG 191
>gi|66816615|ref|XP_642317.1| hypothetical protein DDB_G0278367 [Dictyostelium discoideum AX4]
gi|74856646|sp|Q54Y85.1|DPOE2_DICDI RecName: Full=DNA polymerase epsilon subunit 2; AltName: Full=DNA
polymerase II subunit 2; AltName: Full=DNA polymerase
epsilon subunit B
gi|60470376|gb|EAL68356.1| hypothetical protein DDB_G0278367 [Dictyostelium discoideum AX4]
Length = 676
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 130/431 (30%), Positives = 224/431 (51%), Gaps = 29/431 (6%)
Query: 236 EEQIFSVISAFDIPQFDYDPDLKKF-KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 294
E++ VI AF+ P F++D + K+F K + R L S++KS L+R+RY + QRT R+
Sbjct: 76 EKEALKVIDAFNTPLFNFDSNSKQFIKSENFDRSLHGSSNSKSDLYRKRYLKVLQRTERN 135
Query: 295 SLFNNINPNADSVKLDW--VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDL 352
F+ +D +K ++ + L SL + VLG ISQ++E+++++ED V++D+
Sbjct: 136 DYFSTPVLASDKLKNEYQTITPLSSLLGNTGRKHVLGTISQIEEDQFYIEDLNTNVKIDI 195
Query: 353 SQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVS 412
S+ + G+ T N I+ G + D + D + PP E + + N +++G
Sbjct: 196 SKAKFEFGIVTINSIIQASGEFIDGVFIADKIQLPPTEERCETLKFLQNIDMFG--ERPQ 253
Query: 413 LKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRV 472
K++ ++ K EK E+ I+ LSDV LD+++V L +++ ++ P + +
Sbjct: 254 KKTMEQLIKYEKEKEDNSILFLSDVWLDSERVMERL-DYLFGGYKDCPPFAMILMGNFTE 312
Query: 473 QYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTS 532
++ +++ K+P ++ F+ VP T +
Sbjct: 313 HPLINGTQYQLKKYFNQLAMVIQKYPNIHQFTQ------------FIFVPG----PTDPT 356
Query: 533 KVLSPALPKFITS-----EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK 587
L LPKF S +F +P ST TNPCR++YCSQEI++ R++L +KM R+CI
Sbjct: 357 GSLLNILPKFPISNVFIKDFISLIPKSTFTTNPCRIRYCSQEIIIFRDDLTNKMRRHCIL 416
Query: 588 FPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTI 646
P + DIS+H + + S L +L L P+YW+ A+S+YPLPDL+++GD+ N Y
Sbjct: 417 EPSQSCDISQHLIELICSNSHLCNLTLEDKPIYWNYDHAMSVYPLPDLLVIGDKSNQYEH 476
Query: 647 QNTDCIF-INP 656
D + +NP
Sbjct: 477 SRADGTYSMNP 487
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 30 EEQIFSVISAFDIPQFDYDPDLKKF-KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 88
E++ VI AF+ P F++D + K+F K + R L S++KS L+R+RY + QRT R+
Sbjct: 76 EKEALKVIDAFNTPLFNFDSNSKQFIKSENFDRSLHGSSNSKSDLYRKRYLKVLQRTERN 135
Query: 89 SLFNNINPNADSVKLDW--VEYLMSLTNVNHKTVVLGMISQLKEN 131
F+ +D +K ++ + L SL + VLG ISQ++E+
Sbjct: 136 DYFSTPVLASDKLKNEYQTITPLSSLLGNTGRKHVLGTISQIEED 180
>gi|224029473|gb|ACN33812.1| unknown [Zea mays]
Length = 533
Score = 191 bits (484), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 137/442 (30%), Positives = 210/442 (47%), Gaps = 43/442 (9%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
S V+ AF +P+F YDP K F + + ++ K+ L+R+RY ++ QR R
Sbjct: 90 TSARSALRVVDAFLVPRFHYDPIKKVFYEHTGRLAVHGEAGDKASLYRDRYQVLLQRLSR 149
Query: 294 HSLFNNINPNADSVKLDW----VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
F+ P D+V + + + SL + ++G+ISQL+E +++LED TG V
Sbjct: 150 DKYFSK--PAFDTVATEHCSCEITSVQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVP 207
Query: 350 LDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNS-RLYFGNQNIWGG 407
+DLS G + EN +++ EG + I V+ GFPP E + S L G GG
Sbjct: 208 IDLSNAKITSGFFVENTVIVAEGELLSNGIFQVNTCGFPPLEDREASVSLLMGFDFFGGG 267
Query: 408 PSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC---------EFITSEFQG 458
P + R++ ++K N M VILSDV LDN + L E + S F
Sbjct: 268 VIPT--EETLRLSSLKKKAVNDMFVILSDVWLDNPETMEKLAVVLDGYDSVEVVPSLF-- 323
Query: 459 FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
V + PC + + S E L + L +M +++ ++ F
Sbjct: 324 -VLMGNFCSRPCNLAFNSFEELRFQFGKLGEMI---------------AARSRLKEHSRF 367
Query: 519 LIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREEL 577
L +P G SK L ALPK++ E Q +PNS +NPCRV++ +QEI+ R++L
Sbjct: 368 LFIPGPDDAGP--SKALPRCALPKYLIEELQKHIPNSIFVSNPCRVKFYTQEIVFFRQDL 425
Query: 578 LSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
L +M R+C+ P E D +H V T+ Q L LPL + P+ W+ L LYP P
Sbjct: 426 LYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHT 485
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
++LGD+ + T NP
Sbjct: 486 IVLGDKSEQKAFKYTGITCFNP 507
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 6/108 (5%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
S V+ AF +P+F YDP K F + + ++ K+ L+R+RY ++ QR R
Sbjct: 90 TSARSALRVVDAFLVPRFHYDPIKKVFYEHTGRLAVHGEAGDKASLYRDRYQVLLQRLSR 149
Query: 88 HSLFNNINPNADSVKLDW----VEYLMSLTNVNHKTVVLGMISQLKEN 131
F+ P D+V + + + SL + ++G+ISQL+E
Sbjct: 150 DKYFS--KPAFDTVATEHCSCEITSVQSLIGCTGRRWIMGVISQLEER 195
>gi|62320640|dbj|BAD95306.1| DNA polymerase epsilon subunit B -like protein [Arabidopsis
thaliana]
Length = 526
Score = 190 bits (483), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 127/415 (30%), Positives = 212/415 (51%), Gaps = 33/415 (7%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
++I AF +P+F YD K+F + ++ AK+ L+RE++ ++ QR R F+
Sbjct: 91 LAIIDAFLVPKFGYDSVKKRFNEHTSSLPIHGEASAKTALYREQFMLLSQRVSRAEHFSR 150
Query: 300 INPNADSVKLD--WVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSY 357
+A+ + + + + SL + + V+G+ISQL++ ++LED + V++DLS+
Sbjct: 151 PAFDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDGHFYLEDLSASVEIDLSKAKI 210
Query: 358 HPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSV 416
G +TEN I+L EG + + I V GFPP E + + +GG + ++ + +
Sbjct: 211 TTGFFTENTIILAEGEMQVNGIFQVITCGFPPLEDRDKTLKAHSEYDFFGGGT-LTKEEM 269
Query: 417 NRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-------FVPNSTMATNP 469
++ +E+ N VILSD+ LD+++V L E + F+ FV + P
Sbjct: 270 IKLADLERQAVNDTFVILSDIWLDDEEVMRKL-ETVLDGFESVETVPSLFVFMGNFCSRP 328
Query: 470 CRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGT 529
C + + S L E K+ R P + S+ FL +P E
Sbjct: 329 CNLSFGSYSSL---REQFGKLGRMIGNHPRLKENSR------------FLFIPG--PEDA 371
Query: 530 VTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF 588
S VL ALPK++T E + +PN+ ++NPCRV++ +QEI+ R++LL +M R+C+
Sbjct: 372 GPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSCLVT 431
Query: 589 P---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ 640
P E D KH V T+ Q L LPL + P+ W+ AL LYP P ++LGD+
Sbjct: 432 PSSEETNDPFKHLVYTITHQSHLCPLPLMVQPIIWNYDHALRLYPTPHTIVLGDK 486
Score = 48.5 bits (114), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
++I AF +P+F YD K+F + ++ AK+ L+RE++ ++ QR R F+
Sbjct: 91 LAIIDAFLVPKFGYDSVKKRFNEHTSSLPIHGEASAKTALYREQFMLLSQRVSRAEHFSR 150
Query: 94 INPNADSVKLD--WVEYLMSLTNVNHKTVVLGMISQLKEN 131
+A+ + + + + SL + + V+G+ISQL++
Sbjct: 151 PAFDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDG 190
>gi|297812329|ref|XP_002874048.1| hypothetical protein ARALYDRAFT_489063 [Arabidopsis lyrata subsp.
lyrata]
gi|297319885|gb|EFH50307.1| hypothetical protein ARALYDRAFT_489063 [Arabidopsis lyrata subsp.
lyrata]
Length = 526
Score = 189 bits (481), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 127/416 (30%), Positives = 209/416 (50%), Gaps = 35/416 (8%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
+VI AF IP+F YD KKF + ++ AK+ L+RER+ ++ QR R F+
Sbjct: 91 LAVIDAFLIPKFGYDSVKKKFNEHTSSLPIHGEASAKTALYRERFMLLSQRVSRAEHFSR 150
Query: 300 INPNADSVKLD--WVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSY 357
+A+ + + + + SL + + V+G+ISQL++ ++LED + V++DLS+
Sbjct: 151 PAFDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDGHFYLEDLSASVEIDLSKAKI 210
Query: 358 HPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSV 416
G +TEN I+L EG + + I V GFPP E + + +GG + +++
Sbjct: 211 TTGFFTENTIILAEGEMQVNGIFQVITCGFPPLEDRDKTLKAHSEYDFFGGGTLTKEETI 270
Query: 417 NRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-------FVPNSTMATNP 469
R+ +E+ + VILSD+ LD+++V L E + F+ FV + P
Sbjct: 271 -RLADLERQAVSDTFVILSDIWLDDEEVIRKL-ETVLDGFESVETVPSLFVFMGNFCSRP 328
Query: 470 CRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGT 529
C + + S L E K+ R P + S+ FL +P G
Sbjct: 329 CNLSFGSYSSL---REQFGKLGRMIGNHPRLKENSR------------FLFIPG---PGD 370
Query: 530 VTSKVLSP--ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK 587
+ P ALP ++T E + +PN+ ++NPCRV++ +QEI+ R++LL +M R+C+
Sbjct: 371 AGPSTVLPRCALPNYLTEELRNIIPNAIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSCLV 430
Query: 588 FP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ 640
P E D KH V T+ Q L LPL + P+ W+ +L LYP P ++LGD+
Sbjct: 431 APSTEETKDPFKHLVYTITHQSHLCPLPLMVQPIIWNYDHSLRLYPTPHTIVLGDK 486
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 54/100 (54%), Gaps = 2/100 (2%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
+VI AF IP+F YD KKF + ++ AK+ L+RER+ ++ QR R F+
Sbjct: 91 LAVIDAFLIPKFGYDSVKKKFNEHTSSLPIHGEASAKTALYRERFMLLSQRVSRAEHFSR 150
Query: 94 INPNADSVKLD--WVEYLMSLTNVNHKTVVLGMISQLKEN 131
+A+ + + + + SL + + V+G+ISQL++
Sbjct: 151 PAFDAEMSQFENNEISSIQSLISQRGRKWVMGVISQLEDG 190
>gi|449507384|ref|XP_004163016.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Cucumis sativus]
Length = 536
Score = 189 bits (480), Expect = 4e-45, Method: Compositional matrix adjust.
Identities = 135/435 (31%), Positives = 210/435 (48%), Gaps = 38/435 (8%)
Query: 242 VISAFDIPQFDYDPDLKKF-------KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 294
+I+AFDIP+F YDP + F K + + D+ AK+ L+R+R+ ++ QR R
Sbjct: 96 IINAFDIPKFRYDPIKRSFCMHIPWAKKHTENLPIHGDASAKAALYRDRFLLLSQRLSRD 155
Query: 295 SLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDL 352
F+ + E + SL + V+G+ISQ+++ ++LED T V+++L
Sbjct: 156 QHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDGHFYLEDLTASVEINL 215
Query: 353 SQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
S GL+TEN I++ EG + I V GFPP E S Q+ +G +
Sbjct: 216 SSAKITTGLFTENTIIVAEGEMLVEGIFQVVTCGFPPLEERGKSLKLLAGQDFFGD-GVL 274
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-------FVPNST 464
+ R +EK N M VILSD+ LD+++ L E I F+ FV
Sbjct: 275 PKEETLRRADLEKKAVNDMFVILSDIWLDSEEAMGKL-ETILDGFENVEVVPSLFVLMGN 333
Query: 465 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKI 524
++PC + + S L ++ L KM I+ H N K +F+ P
Sbjct: 334 FCSHPCNIAFNSFSSLRLQFGKLGKM------------IAAHPRLNEHSK-FLFIPGPDD 380
Query: 525 YVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRN 584
TV + ALPK++T E Q V N+ ++NPCRV++ +QEI+ R++LL +M R+
Sbjct: 381 AGPSTVLPRC---ALPKYLTEELQMHVSNAIFSSNPCRVRFYTQEIVFFRQDLLYRMRRS 437
Query: 585 CIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQL 641
C+ P E D +H V T+ Q L LPL + P+ W+ L LYP P +++LGD+
Sbjct: 438 CLIPPSTEETSDPFEHLVATITHQSHLCPLPLVIQPIIWNYDHCLHLYPTPHVIVLGDRS 497
Query: 642 NAYTIQNTDCIFINP 656
+ T NP
Sbjct: 498 KQQAFKYTGITCFNP 512
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 52/105 (49%), Gaps = 9/105 (8%)
Query: 36 VISAFDIPQFDYDPDLKKF-------KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 88
+I+AFDIP+F YDP + F K + + D+ AK+ L+R+R+ ++ QR R
Sbjct: 96 IINAFDIPKFRYDPIKRSFCMHIPWAKKHTENLPIHGDASAKAALYRDRFLLLSQRLSRD 155
Query: 89 SLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
F+ + E + SL + V+G+ISQ+++
Sbjct: 156 QHFSKPAFDIGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDG 200
>gi|393907080|gb|EJD74509.1| DNA polymerase epsilon subunit 2 [Loa loa]
Length = 347
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 109/329 (33%), Positives = 184/329 (55%), Gaps = 18/329 (5%)
Query: 330 MISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPP 389
M++Q Y +ED TG +++DL ++++H GL+T+ CI+++EG + V A+G P
Sbjct: 1 MLTQRNPGVYEIEDLTGAIEVDLKESTFHKGLFTDGCIMMLEGRSIGGVFRVSAVGLAPI 60
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC 449
E++K +R YFG N +GG V+ S R+ + + N+ A +++SDV LD+ ++ N +
Sbjct: 61 ESAKMTRNYFGITNWFGGKGTVACGSQIRLRTLCERNDRARFILMSDVWLDDSRILNAIN 120
Query: 450 EFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSK 509
E I + F + +A C +CSQ V + ++ + ++ + K
Sbjct: 121 ELIFA----FTDSQLLAFIICG-NFCSQ---VGTADAYHRI------YDGFSHLAAILQK 166
Query: 510 NN-GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQ 568
+ ++++ F+ +P + ++ S + P LP F E VPN + A+NPCR+QY +Q
Sbjct: 167 DVLADRNVHFIFIPGP-DDPSLNSILPRPPLP-FELFELMKDVPNCSFASNPCRIQYTNQ 224
Query: 569 EILVVREELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALS 627
EI+++R +L+ KMCRN I P DI +HF T+ S G L LPL++ PV W L+
Sbjct: 225 EIVIMRHDLVEKMCRNSIHMPSTTADIPEHFCHTVASVGHLSPLPLHISPVIWQMDSYLT 284
Query: 628 LYPLPDLVILGDQLNAYTIQNTDCIFINP 656
LYPLPDLV++ D+ + Q +F+NP
Sbjct: 285 LYPLPDLVVIADKFEHFHYQLEGTLFVNP 313
>gi|357148046|ref|XP_003574603.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Brachypodium
distachyon]
Length = 533
Score = 187 bits (475), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 131/442 (29%), Positives = 208/442 (47%), Gaps = 43/442 (9%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
S V+ +F +P+F YDP K F + + ++ K+ L+R+RY ++ QR R
Sbjct: 90 TSARSALRVVDSFVVPRFQYDPIKKVFYEHTGRLAIHGEASDKAALYRDRYQVLLQRLAR 149
Query: 294 HSLFN-----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIV 348
F+ + DS ++ ++ L+ T + ++G+ISQL+E +++LED TG V
Sbjct: 150 DKYFSRPAFETVMTEKDSCEITSIQSLIGCTG---RRWIMGVISQLEERQFYLEDLTGAV 206
Query: 349 QLDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGG 407
+DLS G + EN +++ EG + I V+ GFPP E + S + +GG
Sbjct: 207 PIDLSNAKITSGFFVENTVIVAEGELLSNGIFQVNTCGFPPLEDREASLSLLMGLDFFGG 266
Query: 408 PSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC---------EFITSEFQG 458
+ + R++ +E N M VILSDV LD+ + L E + S F
Sbjct: 267 -GVIPTEETLRLSSLENKAVNDMFVILSDVWLDSAETMEKLAVVLDGYDSVEVVPSLF-- 323
Query: 459 FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
V + PC + + S E L ++ L +M + E F
Sbjct: 324 -VLMGNFCSRPCNLAFNSFEELRLQFGKLGEMIAARTRLKEHSR---------------F 367
Query: 519 LIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREEL 577
L +P G SK L ALPK++ E Q +PN+ +NPCRV++ +QEI+ R++L
Sbjct: 368 LFIPGPDDAGP--SKALPRCALPKYLIEELQKHIPNAIFVSNPCRVRFYTQEIVFFRQDL 425
Query: 578 LSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
L +M R+C+ P E D +H V T+ Q L LPL + P+ W+ L LYP P
Sbjct: 426 LYRMRRSCLIPPTTEETSDPFEHLVATITHQSHLCPLPLTVQPIIWNFDHCLRLYPTPHT 485
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
++LGD+ + T NP
Sbjct: 486 IVLGDRSEQKAFKYTGITCFNP 507
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/109 (26%), Positives = 54/109 (49%), Gaps = 8/109 (7%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
S V+ +F +P+F YDP K F + + ++ K+ L+R+RY ++ QR R
Sbjct: 90 TSARSALRVVDSFVVPRFQYDPIKKVFYEHTGRLAIHGEASDKAALYRDRYQVLLQRLAR 149
Query: 88 HSLFN-----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
F+ + DS ++ ++ L+ T + ++G+ISQL+E
Sbjct: 150 DKYFSRPAFETVMTEKDSCEITSIQSLIGCTG---RRWIMGVISQLEER 195
>gi|403168904|ref|XP_003328477.2| hypothetical protein PGTG_09771 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167711|gb|EFP84058.2| hypothetical protein PGTG_09771 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 573
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 145/457 (31%), Positives = 221/457 (48%), Gaps = 53/457 (11%)
Query: 236 EEQIFSVISAFDIPQFDYDPDLKKFK---LVDKKRKLCADSDAKSKLFRERYNIIRQRTL 292
E Q VI AF IP+ + + K F+ K L +K R+RY+ IRQ
Sbjct: 106 ELQTLKVIDAFSIPRLRWSEERKMFEEPTAEGSKPSLLGQPISKISYLRDRYHTIRQVIF 165
Query: 293 RHSLFNNINPNADSVKLDWVEY--LMSLTNVN-------HKTVVLGMISQLKENRYFLED 343
R+ F+ P A + L E M LT+ N + ++ G IS++K+ Y LED
Sbjct: 166 RNEHFS---PPAVAGALGEAEREEYMKLTSSNNLLGRAGQRFLLFGRISRMKDQSYCLED 222
Query: 344 PTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQ 402
G V+LDLS S GL+TE C+VL EG Y+ ++ V +G PP E +R F N
Sbjct: 223 LEGWVKLDLSIASAAEGLFTEGCLVLAEGEYQSNETFKVLEIGHPPSEQRGATRKLFANI 282
Query: 403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN 462
+ + G P+SL R+ K E+N+++ IV +SD HLDN V N + + + +
Sbjct: 283 D-FSGAGPLSLAEEARLKKREQNSDSQFIV-MSDFHLDNPNVLGNFEQILQGYQDVLIES 340
Query: 463 STMATNPCRVQYC---SQEILVVR-------EELLSKMCRNCIKFPEEGDISKHVSKNNG 512
+ + P C SQ+ + + L SK+ + KF +++H+
Sbjct: 341 NNVVRPPALWILCGNFSQKPFIFDGPNISFYQSLFSKLAVSFSKF---SLVTEHI----- 392
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPA--LPKFITSEFQGFVPNSTM--ATNPCRVQYCSQ 568
+IF+ P + T+ + PA + + S Q +P+ + +NPCR+++ SQ
Sbjct: 393 --HLIFVPGPNDPWDSTMLPRQALPASIVKPLLHSTSQ--IPSGHLHFGSNPCRIRWMSQ 448
Query: 569 EILVVREELLSKMCRNCI---KFP------EEGDISKHFVRTLVSQGTLVSLPLNLCPVY 619
EI++ RE L SKMCRN I K P E+ DI+K V+T++ Q L P+ + PV
Sbjct: 449 EIVIFRENLASKMCRNVIEALKDPTIAADEEDIDITKFLVQTILDQAHLSPFPITVSPVL 508
Query: 620 WSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
W AL LYP+P ++L D AYT+ C NP
Sbjct: 509 WEHDQALRLYPMPTALVLADSYPAYTLTYEGCHVFNP 545
>gi|328869891|gb|EGG18266.1| putative DNA polymerase epsilon subunit B [Dictyostelium
fasciculatum]
Length = 595
Score = 187 bits (474), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 150/456 (32%), Positives = 229/456 (50%), Gaps = 37/456 (8%)
Query: 214 EQNNIMNWLK-LSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRK-LCA 271
++ I N LK L S+ I E++ VISAFD+P F YD + K F +K K L
Sbjct: 73 DKETISNSLKELESQSDSGSI--EKEAIKVISAFDVPLFHYDQNKKLFVKEEKPEKSLHG 130
Query: 272 DSDAKSKLFRERYNIIRQRTLRHSLFNN-INPNA----DSVKLDWVEYLMSLTNVNHKTV 326
++ +KS+LFR RY Q RH F I PN D L + L L N K
Sbjct: 131 NAKSKSELFRRRYQTALQILERHPTFAAPILPNQKKSLDQFTLTPINSL--LGNPGMK-C 187
Query: 327 VLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGF 386
VLG ISQ+ E +Y+LED VQLDL+ + GL TEN IVLV G ++D + ++
Sbjct: 188 VLGTISQIVEGKYYLEDLNSKVQLDLTNATSEYGLITENGIVLVWGEFEDGLFKAASIRP 247
Query: 387 PPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAM---IVILSDVHLDNDK 443
E + S +++G + +RM K EN + I++ SDV LDN
Sbjct: 248 SNTEERQKSLDLLQGLDMFGD------RPNDRMMHKLKQYENEVENSIILFSDVWLDNPT 301
Query: 444 VRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDI 503
V ++L E + ++ F P + + + + IK+PE
Sbjct: 302 VVSHL-ESVFEKYVHFPPIAVVLMGNFTEHPLIGGTQYKLKTHFDNLASIIIKYPELLIK 360
Query: 504 SKHVSKNNGEKDIIFLIVPK-IYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCR 562
+K F+ VP G++ + + PA+ + T F+ +PNS TNPCR
Sbjct: 361 TK------------FIFVPGPTDPTGSLLNILPKPAIVDYFTKGFKQRIPNSIFTTNPCR 408
Query: 563 VQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWS 621
++YC+QEI++ R++++++M R+ IK P G D+ + + TL S L LPL++ P+YW+
Sbjct: 409 LRYCTQEIVIFRDDIVNRMRRHIIKEPNPGTDLHQSVINTLSSNSHLSCLPLDIRPIYWN 468
Query: 622 QYGALSLYPLPDLVILGDQLNAYTIQNTDCIF-INP 656
+LSLYPLPDL++LGD+ + + Q+ +F NP
Sbjct: 469 YDHSLSLYPLPDLLVLGDKYDTFQYQSDSGLFTFNP 504
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 54/108 (50%), Gaps = 9/108 (8%)
Query: 30 EEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRK-LCADSDAKSKLFRERYNIIRQRTLRH 88
E++ VISAFD+P F YD + K F +K K L ++ +KS+LFR RY Q RH
Sbjct: 94 EKEAIKVISAFDVPLFHYDQNKKLFVKEEKPEKSLHGNAKSKSELFRRRYQTALQILERH 153
Query: 89 SLFNN-INPNA----DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
F I PN D L + L L N K VLG ISQ+ E
Sbjct: 154 PTFAAPILPNQKKSLDQFTLTPINSL--LGNPGMK-CVLGTISQIVEG 198
>gi|356560075|ref|XP_003548321.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Glycine max]
Length = 525
Score = 186 bits (472), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 133/437 (30%), Positives = 210/437 (48%), Gaps = 35/437 (8%)
Query: 232 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 291
E + V+ AF IP++ YD K+F + ++ AKS L+RER+ ++ QR
Sbjct: 81 ETSDAAAAIRVVDAFLIPKYKYDYSRKQFYEHTGSLSIHGEASAKSDLYRERFLLLFQRL 140
Query: 292 LRHSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
R F+ ++ E + SL + V+G+ISQL++ Y+LED T V+
Sbjct: 141 SRDQHFSAPAFESEFSHFGSCEISPIQSLVGQTGRRWVMGVISQLEDGHYYLEDLTAAVK 200
Query: 350 LDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGP 408
++LS GL++EN IV+ EG + I V GFPP E S + +G
Sbjct: 201 INLSNARITTGLFSENTIVVAEGEMLVEGIFQVLTCGFPPLEDRDKSVTLLAGHDFFGAG 260
Query: 409 SPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-------FVP 461
+ +++ R+ +ME+ N M +ILSD+ LDN++ L E + F+ FV
Sbjct: 261 TFTKEETI-RLAEMEEKAVNDMFIILSDIWLDNEETLKKL-EVVLDGFEKEIVVPSLFVF 318
Query: 462 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIV 521
++ PC + + L ++ L +M I+ H K FL +
Sbjct: 319 MGNFSSKPCNLSFHFYSSLRMQFGKLGEM------------IAAHTRLKEHSK---FLFI 363
Query: 522 PKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
P G S VL ALPK++T E Q +PN+ ++NPCRV++ +QEI+ R+++L +
Sbjct: 364 PGPDDAGP--SNVLPRCALPKYLTEELQKHIPNAIFSSNPCRVKFYTQEIVFFRQDMLYR 421
Query: 581 MCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVIL 637
M R+C+ P E D +H V T+ Q L LPL + P+ W+ L LYP P ++L
Sbjct: 422 MRRSCLMPPSTEETCDHFEHLVATITHQSHLCPLPLTVQPIIWNYDHCLYLYPTPHTIVL 481
Query: 638 GD--QLNAYTIQNTDCI 652
GD Q A+ C
Sbjct: 482 GDRSQQKAFKYTGITCF 498
Score = 45.4 bits (106), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 51/108 (47%), Gaps = 2/108 (1%)
Query: 26 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 85
E + V+ AF IP++ YD K+F + ++ AKS L+RER+ ++ QR
Sbjct: 81 ETSDAAAAIRVVDAFLIPKYKYDYSRKQFYEHTGSLSIHGEASAKSDLYRERFLLLFQRL 140
Query: 86 LRHSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
R F+ ++ E + SL + V+G+ISQL++
Sbjct: 141 SRDQHFSAPAFESEFSHFGSCEISPIQSLVGQTGRRWVMGVISQLEDG 188
>gi|297734108|emb|CBI15355.3| unnamed protein product [Vitis vinifera]
Length = 527
Score = 185 bits (470), Expect = 7e-44, Method: Compositional matrix adjust.
Identities = 128/434 (29%), Positives = 208/434 (47%), Gaps = 29/434 (6%)
Query: 235 SEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 294
S ++ AF + +F YDP K F + + D+ AKS L+R R+ ++ QR R
Sbjct: 87 STRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRLSRD 146
Query: 295 SLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDL 352
F+ + + E + SL K V+G+ISQL++ +FLED T + L
Sbjct: 147 QHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDGHFFLEDLTASLALLH 206
Query: 353 SQTSYHPGLYTENCIVLVEGH-YKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
Q G ++EN I++ EG + D I V GFPP E S + +GG + +
Sbjct: 207 QQYKITTGFFSENTIIVAEGEMFLDGIFQVSTCGFPPLEDRDESLASLSGLDFFGGGT-L 265
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS-EFQGFVPN-----STM 465
+ + R+ +EK N M VILSDV LDN++ L + E VP+
Sbjct: 266 TREETLRLAGLEKKAVNDMFVILSDVWLDNEETMGKLATVLDGYENVEVVPSLFIFMGNF 325
Query: 466 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIY 525
++PC + + S L ++ L +M + + E +F+ P
Sbjct: 326 CSHPCNLSFHSFSSLRLQFGKLGQMIASHPRLKEH-------------SQFLFIPGPDDA 372
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNC 585
TV + ALP ++T EF+ ++PN+ ++NPCR+++ +QEI++ R++LL +M R+C
Sbjct: 373 GPSTVLPRC---ALPNYLTEEFKKYIPNAIFSSNPCRIKFYTQEIVLFRQDLLYRMRRSC 429
Query: 586 IKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN 642
+ P E D +H V T+ Q L LPL++ P+ W+ L LYP P ++LGD+
Sbjct: 430 LVPPSPEETSDPFEHLVATITHQSHLCPLPLSVQPIIWNYDHCLHLYPNPHTIVLGDRSE 489
Query: 643 AYTIQNTDCIFINP 656
+ T + NP
Sbjct: 490 QKAFKYTGIMCFNP 503
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 29 SEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 88
S ++ AF + +F YDP K F + + D+ AKS L+R R+ ++ QR R
Sbjct: 87 STRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRLSRD 146
Query: 89 SLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
F+ + + E + SL K V+G+ISQL++
Sbjct: 147 QHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDG 191
>gi|255580392|ref|XP_002531023.1| DNA polymerase epsilon subunit B, putative [Ricinus communis]
gi|223529398|gb|EEF31361.1| DNA polymerase epsilon subunit B, putative [Ricinus communis]
Length = 536
Score = 185 bits (469), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 134/430 (31%), Positives = 208/430 (48%), Gaps = 35/430 (8%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
V+ AF +P+F +DP K+F + DS AK+ L+++RY ++ QR R F+
Sbjct: 103 VVDAFLVPKFRFDPIKKQFYQYTGGLSIHGDSSAKAALYKDRYLLLFQRVSRDQHFSK-- 160
Query: 302 PNADSVKLDW----VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSY 357
P D+ D+ + + SL + V+G+ISQL++ ++LED T V+++LS+
Sbjct: 161 PAFDTEISDYGSCEIATIQSLVGQTGRRWVMGVISQLEDGHFYLEDLTASVEINLSKAKI 220
Query: 358 HPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSV 416
G +EN IV+ EG D + V GFPP E S + +GG S +++
Sbjct: 221 TTGFLSENTIVVAEGEMLLDGVFQVFTCGFPPLEDRDKSLKVLAKHDFFGGGSLTKEETL 280
Query: 417 NRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS-EFQGFVPN-----STMATNPC 470
K N M VILSD+ LD+++ L + E Q VP+ ++PC
Sbjct: 281 GLEELECKAV-NDMFVILSDIWLDSEEAMGKLEMVLDGFEIQEVVPSLFVFMGNFCSHPC 339
Query: 471 RVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTV 530
+ + S L ++ L KM I+ H + FL +P G
Sbjct: 340 NLSFHSFSTLRLQFGKLGKM------------IAAHQRLKEHSR---FLFIPGPDDAGP- 383
Query: 531 TSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 589
S VL ALPK++T + Q +PN+ +TNPCRV++ +QEI+ R +LL +M R+C+ P
Sbjct: 384 -STVLPRCALPKYLTEDLQKHIPNAIFSTNPCRVKFYTQEIVFFRHDLLYRMHRSCLMPP 442
Query: 590 ---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTI 646
E D +H V T+ Q L LPL + P+ W+ L LYP P ++LGD+
Sbjct: 443 STEETADPFEHLVATITHQSHLCPLPLIVQPIIWNYDHCLHLYPSPHTIVLGDKSEQKAF 502
Query: 647 QNTDCIFINP 656
+ T NP
Sbjct: 503 KYTGITCFNP 512
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 53/100 (53%), Gaps = 6/100 (6%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
V+ AF +P+F +DP K+F + DS AK+ L+++RY ++ QR R F+
Sbjct: 103 VVDAFLVPKFRFDPIKKQFYQYTGGLSIHGDSSAKAALYKDRYLLLFQRVSRDQHFS--K 160
Query: 96 PNADSVKLDW----VEYLMSLTNVNHKTVVLGMISQLKEN 131
P D+ D+ + + SL + V+G+ISQL++
Sbjct: 161 PAFDTEISDYGSCEIATIQSLVGQTGRRWVMGVISQLEDG 200
>gi|403180543|ref|XP_003338843.2| hypothetical protein PGTG_20380 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375167598|gb|EFP94424.2| hypothetical protein PGTG_20380 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 561
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 148/453 (32%), Positives = 217/453 (47%), Gaps = 55/453 (12%)
Query: 236 EEQIFSVISAFDIPQFDYDPDLKKFKLV---DKKRKLCADSDAKSKLFRERYNIIRQRTL 292
E Q VI AF IP+ + + K F+ K L +K R+RY+ IRQ
Sbjct: 106 ELQTLKVIDAFSIPRLRWSEERKMFEEPTGEGSKPSLLGQPISKISYLRDRYHTIRQVIF 165
Query: 293 RHSLFNNINPNADSVKLDWVEY--LMSLTNVN-------HKTVVLGMISQLKENRYFLED 343
R+ F+ P A + L E M LT+ N + ++ G IS++K+ Y LED
Sbjct: 166 RNEHFS---PPAVAGALGEAEREEYMKLTSSNNLLGRAGQRFLLFGRISRMKDQSYCLED 222
Query: 344 PTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQ 402
G V+LDLS S GL+TE C+VL EG Y+ ++ V +G PP E +R F N
Sbjct: 223 LEGWVKLDLSIASAAEGLFTEGCLVLAEGEYQSNETFKVLEIGHPPSEQRGATRKLFANI 282
Query: 403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN 462
+ + G P+SL R+ K E+N+++ IV +SD HLDN V N + + QG+
Sbjct: 283 D-FSGAGPLSLAEEARLKKREQNSDSQFIV-MSDFHLDNPNVLGNFEQIL----QGYQDV 336
Query: 463 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE-EGDISKHVSKNNGEKDIIFLIV 521
+ N VVR L +C N + +G IS S N + ++ +
Sbjct: 337 LIESNN------------VVRPPALWILCGNFFQSHHIDGTIS--ASTNFSKFSLVTEHI 382
Query: 522 PKIYVEGT----VTSKVLSPALPKFITSEF---QGFVPNSTM--ATNPCRVQYCSQEILV 572
I+V G ++ + ALP I +P+ + +NPCR+++ SQEI++
Sbjct: 383 HLIFVPGPNDPWDSTMLPRQALPASIVKPLLHSTSQIPSGHLHFGSNPCRIRWMSQEIVI 442
Query: 573 VREELLSKMCRNCI---KFP------EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQY 623
RE L SKMCRN I K P E+ DI+K V+T++ Q L P+ + PV W
Sbjct: 443 FRENLASKMCRNVIEALKDPTIAADEEDIDITKFLVQTILDQAHLSPFPITVSPVLWEHD 502
Query: 624 GALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
AL LYP+P ++L D AYT+ C NP
Sbjct: 503 QALRLYPMPTALVLADSYPAYTLTYEGCHVFNP 535
>gi|358338036|dbj|GAA56372.1| DNA polymerase epsilon subunit 2 [Clonorchis sinensis]
Length = 859
Score = 184 bits (468), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 155/523 (29%), Positives = 229/523 (43%), Gaps = 94/523 (17%)
Query: 229 CRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKK-------RKLCADSDAKSKLFR 281
C+ + N + I VI AF++P+F Y LKKF +D A S KS L+
Sbjct: 285 CKADRNVDNPILFVIDAFEVPRFHYSRTLKKFIPLDNSDLDGQWNSLFPASSQVKSFLYA 344
Query: 282 ERYNIIRQRTLRHSLFN------NINPNADS-VKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY +I Q LRH LF+ +++ N ++ +EYL++ + +VLGM+ QL
Sbjct: 345 NRYEVIYQHVLRHQLFSQTAAHGHVDANGSGNYRIRPIEYLLASGSRIESAIVLGMLCQL 404
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
+E + LEDPTGIV+LDL + +H GL+ E C+VLVEG Y+DQILHV +G PP E S
Sbjct: 405 REGIWHLEDPTGIVRLDLKEAVFHEGLFPEGCVVLVEGAYEDQILHVMGMGLPPCEMSDA 464
Query: 395 SRLYFGNQNIWGGPSPVSLK-----SVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC 449
SR F N +GG ++ ++R+ + +AM+V+L + LD L
Sbjct: 465 SRRAFSVSNPFGGGLAGAVAAPQDPKMHRLLMTTQAGADAMLVLLGETRLDQGDCLERLS 524
Query: 450 EFITSEFQ----GFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 505
T FV + + C + + +R L + FPE +
Sbjct: 525 TLFTGYSACPPVAFVLTGNFLSPDSNGRSCGERLSCLRSLLHQLLSIYKSAFPEIDSLGP 584
Query: 506 HVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNST--------M 556
S + +++P S +L P + EF G + +
Sbjct: 585 SQSPH-------LILIPGPDDPVCKPSHLLPKRGFPAELIVEFLGRRADMAVECPSWLHL 637
Query: 557 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---------------EEGDISKH---- 597
A+NPCR++ ++E++V R + + R+CI P +E + K
Sbjct: 638 ASNPCRIRLYTREVVVFRADYTRLLVRHCIHLPTLTGPQEENTDTTGSQETQLPKSLQSP 697
Query: 598 -------------------------FVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
R L SQ L+ L ++ PVYWS ALSL PLP
Sbjct: 698 NRNDDLPTDTAIVKPATPAARLGVGLARCLASQAHLLPLMGHIAPVYWSWDQALSLNPLP 757
Query: 633 DLVI------LGDQLNAYT---IQNTDCIFINPV-FHNTVRNA 665
+LV+ L D LNA T IQ +C FINP F TV A
Sbjct: 758 NLVVAVEPQALAD-LNASTANPIQTGNCRFINPGQFGQTVAAA 799
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/141 (32%), Positives = 70/141 (49%), Gaps = 15/141 (10%)
Query: 6 DNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKK----- 60
D+ + L E NEC + + N + I VI AF++P+F Y LKKF +D
Sbjct: 269 DDTRISKALCEQAVNEC-KADRNVDNPILFVIDAFEVPRFHYSRTLKKFIPLDNSDLDGQ 327
Query: 61 --RKLCADSDAKSKLFRERYNIIRQRTLRHSLFN------NINPNADS-VKLDWVEYLMS 111
A S KS L+ RY +I Q LRH LF+ +++ N ++ +EYL++
Sbjct: 328 WNSLFPASSQVKSFLYANRYEVIYQHVLRHQLFSQTAAHGHVDANGSGNYRIRPIEYLLA 387
Query: 112 LTNVNHKTVVLGMISQLKENI 132
+ +VLGM+ QL+E I
Sbjct: 388 SGSRIESAIVLGMLCQLREGI 408
>gi|353234438|emb|CCA66463.1| related to DNA polymerase epsilon subunit B [Piriformospora indica
DSM 11827]
Length = 542
Score = 183 bits (464), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 129/429 (30%), Positives = 211/429 (49%), Gaps = 33/429 (7%)
Query: 243 ISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINP 302
I+AF++P++ Y + K F+ K L +++K+ R+R+NII+Q LR+ N +P
Sbjct: 102 INAFEMPRWHYSQERKSFERAAAKPSLAGSAESKAVFLRDRHNIIKQIVLRN---ENFSP 158
Query: 303 NADSVKLDWVEYLMS------LTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTS 356
A + K D YL L + ++ GM+++ E R LED G+V LD+S T
Sbjct: 159 PAFAGK-DRANYLKLTSTRNLLGRAGGRFLLFGMLTRSPEGRLCLEDLDGVVPLDISATG 217
Query: 357 YHPGLYTENCIVLVEGHYKD-QILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKS 415
G +TE C VLVEG Y D + L V A+G PP E + +R +G+ + G + L+
Sbjct: 218 PSEGFFTEGCFVLVEGDYSDEETLVVVAVGHPPTERRRIARGIYGHVDFLGKGNTTVLED 277
Query: 416 VNRMTKMEK-NNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-FVPNSTMATNPCRVQ 473
N + + N + +++LSDVHLD+++ L + + +P +
Sbjct: 278 DNWAKQAARPENADITLLVLSDVHLDDERTLKGLRKLFEQAVEAEVIPKIFILCGDFTSG 337
Query: 474 YCSQEILVVR-EELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTS 532
+I + R ++ + + ++FP I ++ FL VP +S
Sbjct: 338 NIKNDIEMDRYKDGFTSLGDLILEFP---SIKRYSH---------FLFVPG--PNDPWSS 383
Query: 533 KVL-SPALPKFITSEFQGFVPNSTM-ATNPCRVQYCSQEILVVREELLSKMCRNCIKFP- 589
+VL +P T+ + +P + + ATNPCR+++ QEI++ RE ++ KM RN I
Sbjct: 384 EVLPRRPIPTAFTNRLEAKLPKTAVFATNPCRIKFMGQEIVIFRENMMGKMMRNLIGVKP 443
Query: 590 --EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQ 647
E GD+ ++ V+TL+ Q L L L + YW AL LYP+P V+L D AY +
Sbjct: 444 DQESGDLKRYLVQTLIDQAHLCPLSLTVQATYWEFDQALRLYPMPTAVVLADSYEAYQLT 503
Query: 648 NTDCIFINP 656
C NP
Sbjct: 504 YEGCHVFNP 512
Score = 45.4 bits (106), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 29/101 (28%), Positives = 52/101 (51%), Gaps = 10/101 (9%)
Query: 37 ISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINP 96
I+AF++P++ Y + K F+ K L +++K+ R+R+NII+Q LR+ N +P
Sbjct: 102 INAFEMPRWHYSQERKSFERAAAKPSLAGSAESKAVFLRDRHNIIKQIVLRN---ENFSP 158
Query: 97 NADSVKLDWVEYLM------SLTNVNHKTVVLGMISQLKEN 131
A + K D YL L + ++ GM+++ E
Sbjct: 159 PAFAGK-DRANYLKLTSTRNLLGRAGGRFLLFGMLTRSPEG 198
>gi|25150040|ref|NP_501489.2| Protein POLE-2 [Caenorhabditis elegans]
gi|21431777|sp|Q19196.2|DPOE2_CAEEL RecName: Full=Probable DNA polymerase epsilon subunit 2; AltName:
Full=DNA polymerase II subunit 2; AltName: Full=DNA
polymerase epsilon subunit B
gi|351060026|emb|CCD67651.1| Protein POLE-2 [Caenorhabditis elegans]
Length = 534
Score = 182 bits (462), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 215/436 (49%), Gaps = 30/436 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
+C ++ +V AF + +D+D DL+K L +K L ADS + S R+R+ I
Sbjct: 77 QCKSKGTQDAGKLLNVFDAFSLQPYDFDADLRKMVLRKEKTSLAADSSSFSHAARQRFFI 136
Query: 287 IRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
++QR +R + N K E L S T VVLGM++Q K + Y +ED +G
Sbjct: 137 VKQRAMRCASLKNF-------KFTTCEILGSSTKHLQSVVVLGMLTQQKADCYHIEDLSG 189
Query: 347 IVQLDLSQ-TSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG-NQNI 404
V+++ + T +H L+ E+ I + EG +++ +L V+ + P E+++ +R N+N
Sbjct: 190 SVEVEFKEDTKFHHALFHEHSIAIFEGTFENSVLTVNEVAMVPVESAEVTRKELSSNENW 249
Query: 405 WGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNST 464
+GG ++ + +R+ E+ +V LSDV LD+ KV + + + QG+
Sbjct: 250 FGGDDKIAFRCSDRLRSALAKQEDTSLVFLSDVFLDDKKVMKAVFKLL----QGYKDQPP 305
Query: 465 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKI 524
+A C +CS+ +LL + R + + K+ + IF+ P
Sbjct: 306 VAIVFCG-NFCSRPRQTDTIDLLDRGFRWL------ANQLTPLRKDYEKTQFIFVPGPDD 358
Query: 525 YVEGTVTSKVLSPALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMC 582
TV + P LP + F+ P + T A+NPCR+Q+ SQEI+V R +L+ K C
Sbjct: 359 PFVDTVLPR---PHLPSLL---FKHISPIISCTFASNPCRIQFASQEIVVFRSDLIKKTC 412
Query: 583 RNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN 642
R+ I I + R+++SQ L LP ++ PV +LSL+PLPDL+I D+
Sbjct: 413 RHSINSITVESIPSRYARSVLSQAHLCPLPQHITPVLPDFSHSLSLHPLPDLLITADRFE 472
Query: 643 AYT--IQNTDCIFINP 656
+T + D I NP
Sbjct: 473 TFTEKVVGADTIVSNP 488
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 72
+LI T +C ++ +V AF + +D+D DL+K L +K L ADS + S
Sbjct: 69 ELIRDTFRQCKSKGTQDAGKLLNVFDAFSLQPYDFDADLRKMVLRKEKTSLAADSSSFSH 128
Query: 73 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
R+R+ I++QR +R + N K E L S T VVLGM++Q K +
Sbjct: 129 AARQRFFIVKQRAMRCASLKNF-------KFTTCEILGSSTKHLQSVVVLGMLTQQKAD 180
>gi|428167521|gb|EKX36479.1| DNA polymerase epsilon subunit B, partial [Guillardia theta
CCMP2712]
Length = 472
Score = 181 bits (459), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 138/459 (30%), Positives = 213/459 (46%), Gaps = 43/459 (9%)
Query: 223 KLSSECCRTEINSEEQ-------IFSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSD 274
K++SE + IN EQ +I + P YD D K F D R + A
Sbjct: 8 KITSELVQEIINETEQRDGESTEAIVIIDHKETPISRYDKDRKVFLREDGSSRSISAKKV 67
Query: 275 AKSKL--FRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMIS 332
++L FRERY II QR +R+ +F DS + N + VLG+++
Sbjct: 68 QFNRLQAFRERYEIINQRVMRNEIFEKKKFVQDSTYQEISSITSLRRNPGQSSCVLGLLT 127
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEAS 392
Q KE ++ LED TG +++DLS GL+TENC+V+ +G K I V L PP E
Sbjct: 128 QPKEGKFHLEDLTGEIEIDLSNADTSVGLFTENCVVVAQGMMKGDIFVVQVLAMPPAEDR 187
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNL---- 448
K + F ++ P + + + + E +++LSDV LD KV N L
Sbjct: 188 KETCRIFPTLSVPTNRKPYTNEELESLRAEESQQAGTRVIVLSDVWLDRAKVMNGLKMML 247
Query: 449 ------CEFITSE---FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE 499
C+ + F FV + P Y + EL ++
Sbjct: 248 FRYDSACKEAGEDSDLFLIFVFMGNFTSQPAPKNY------TLHRELFDQL--------- 292
Query: 500 EGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATN 559
G I + + IF+ P V G+ + +LP IT F+ VP+ST ++
Sbjct: 293 -GTIIQSFKNLENKSSFIFIPGPN-DVLGSNGMILPRNSLPTVITEPFKNKVPSSTFTSD 350
Query: 560 PCRVQYCSQEILVVREELLSKMCRNCIKFPE--EGDISKHFVRTLVSQGTLVSLPLNLCP 617
PCR+++ SQE+L R+++ SK+ R + P E + +H +T++ QG L LPL++ P
Sbjct: 351 PCRIKFYSQELLFHRDDICSKL-RQYSRRPSNTEKSVYEHAAKTILCQGHLCPLPLHVAP 409
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+ W+ AL +YPLP+++ILGD+ +AYTI NP
Sbjct: 410 IDWNYDHALRMYPLPNVLILGDKASAYTITFKSTQVANP 448
Score = 43.9 bits (102), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 56/124 (45%), Gaps = 4/124 (3%)
Query: 11 TYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDA 69
T +L++ NE + + S E I +I + P YD D K F D R + A
Sbjct: 10 TSELVQEIINETEQRDGESTEAIV-IIDHKETPISRYDKDRKVFLREDGSSRSISAKKVQ 68
Query: 70 KSKL--FRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQ 127
++L FRERY II QR +R+ +F DS + N + VLG+++Q
Sbjct: 69 FNRLQAFRERYEIINQRVMRNEIFEKKKFVQDSTYQEISSITSLRRNPGQSSCVLGLLTQ 128
Query: 128 LKEN 131
KE
Sbjct: 129 PKEG 132
>gi|302824345|ref|XP_002993816.1| hypothetical protein SELMODRAFT_236823 [Selaginella moellendorffii]
gi|300138336|gb|EFJ05108.1| hypothetical protein SELMODRAFT_236823 [Selaginella moellendorffii]
Length = 523
Score = 180 bits (457), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 127/425 (29%), Positives = 206/425 (48%), Gaps = 37/425 (8%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
+SE+ V+ AF +P+F YDP K F +K + D+ +KS L+++R ++ QR +R
Sbjct: 78 SSEQNALIVVDAFKLPRFCYDPIRKMFYRYNKTPSVHGDARSKSALYKDRLQLLHQRLIR 137
Query: 294 HSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
F + D + E L SL + V+G++SQL++ RY+LED + + +D
Sbjct: 138 DRHFAKPAFDMDGSRSGTCELSSLQSLLGCIGRRWVMGIVSQLEDGRYYLEDLSATIPID 197
Query: 352 LSQTSYHPGLYT---ENC---IVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIW 405
LSQ + NC I + H+ L + GFPP E S + +
Sbjct: 198 LSQAISFGKISNGELHNCCGRIAASKRHFSGSFL-ISTCGFPPLEGRNISLSVTAGLDFF 256
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG------- 458
G + +S ++R+ +E+ N M V++SDV LD+++ NL E + F+
Sbjct: 257 GAGA-LSYDEISRLEVLERKAVNDMFVVISDVWLDDEQTMRNL-EVVLDGFENVDVVPSV 314
Query: 459 FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
F+ + PC + + S L + L + I+ H ++ K F
Sbjct: 315 FILMGNFLSRPCNLSFHSFGELRSHFDKLGTL------------IASHTRISSTSK---F 359
Query: 519 LIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 578
+++P G +S + PALP + T E VPN T A+NPCR+++ SQEI++ RE LL
Sbjct: 360 VLIPGPEDPGP-SSVLPRPALPSYFTKELAKHVPNVTFASNPCRIRFFSQEIVLFRENLL 418
Query: 579 SKMCRNCIKFPEEGDIS---KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
+M R CI P + + + +H V T+ Q L LPL P+ W A+ LYP P +
Sbjct: 419 YRMRRLCIVTPSDEETTEPFEHLVATITHQSHLCPLPLTSQPIVWEYDHAMRLYPTPHTI 478
Query: 636 ILGDQ 640
+LGD+
Sbjct: 479 VLGDR 483
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
+SE+ V+ AF +P+F YDP K F +K + D+ +KS L+++R ++ QR +R
Sbjct: 78 SSEQNALIVVDAFKLPRFCYDPIRKMFYRYNKTPSVHGDARSKSALYKDRLQLLHQRLIR 137
Query: 88 HSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
F + D + E L SL + V+G++SQL++
Sbjct: 138 DRHFAKPAFDMDGSRSGTCELSSLQSLLGCIGRRWVMGIVSQLEDG 183
>gi|384493557|gb|EIE84048.1| hypothetical protein RO3G_08753 [Rhizopus delemar RA 99-880]
Length = 486
Score = 179 bits (455), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 129/437 (29%), Positives = 218/437 (49%), Gaps = 25/437 (5%)
Query: 224 LSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRER 283
+SS+ I+ Q F V++AFDIP+ +YD + F+ L + K+++ RER
Sbjct: 37 ISSQAIEETIDVA-QHFHVVNAFDIPKLEYDDFTRTFRKSKSSCNLLSQPREKTEMIRER 95
Query: 284 YNIIRQRTLRHSLFNNINPN-ADSVKLDWVEYLMSLTNVNHKTVVL-GMISQLKENRYFL 341
Y + +QR LR+ F + +DS + + SL + K VL GM++Q+ + + +L
Sbjct: 96 YVLAKQRLLRNETFRPAEMSISDSAYFTKITPIKSLIGQDGKDFVLFGMLTQITDGKLYL 155
Query: 342 EDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFG 400
ED ++LD+SQ+ Y GL+T+ +VEG + +D I HV + PP EA +
Sbjct: 156 EDDDAYIELDVSQSKYGYGLFTDGAFAIVEGTFGEDHIFHVSEINLPPAEARDMTDAILN 215
Query: 401 NQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFV 460
N + +G P P L N + K E+ +E+ VI+SDV LD KV + L + +E+ V
Sbjct: 216 NIDFFGLPKP--LVDENLLKKEERIHEDIFFVIISDVRLDQPKVLDGL-RTMFNEYNNQV 272
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLI 520
P + + + S+ E+++ KF D+ + + +F+
Sbjct: 273 PLAIIFIG----SFTSKPFTASSEDVVEYKD----KFNALADLISEYDELATHTNFVFVP 324
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
G + + SP LP + + V + TNPCR++YC+Q+I++ RE+LL+K
Sbjct: 325 GAGDPWGGQILPQ--SP-LPLSFVTRIKQKVKKAHFTTNPCRIRYCTQDIVIFREDLLNK 381
Query: 581 MCRNC---IKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVIL 637
+ + I + KH ++T++ QG L PL+ P+YW AL L+PLP +I+
Sbjct: 382 ILSDTLLPINLSVDSHRVKHLIQTILDQGHL--YPLSKKPIYWDYDHALRLFPLPHALII 439
Query: 638 GDQLNAY--TIQNTDCI 652
D+ Y T + T C+
Sbjct: 440 ADKCENYGITYEGTHCV 456
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 54/102 (52%), Gaps = 2/102 (1%)
Query: 32 QIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 91
Q F V++AFDIP+ +YD + F+ L + K+++ RERY + +QR LR+ F
Sbjct: 50 QHFHVVNAFDIPKLEYDDFTRTFRKSKSSCNLLSQPREKTEMIRERYVLAKQRLLRNETF 109
Query: 92 NNINPN-ADSVKLDWVEYLMSLTNVNHKTVVL-GMISQLKEN 131
+ +DS + + SL + K VL GM++Q+ +
Sbjct: 110 RPAEMSISDSAYFTKITPIKSLIGQDGKDFVLFGMLTQITDG 151
>gi|303279376|ref|XP_003058981.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226460141|gb|EEH57436.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 627
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 137/483 (28%), Positives = 219/483 (45%), Gaps = 78/483 (16%)
Query: 241 SVISAFDIPQFDYDPDLKKF---KLVDKKRKLCADS-DAKSKLFRERYNIIRQRTLRHSL 296
+++ AFD+P+F YD K F + R +CA S D+K +L+RER+ +++QR RH +
Sbjct: 131 TIVDAFDVPRFTYDTQRKVFHEDAAGPRARSVCATSADSKIELYRERFLLLQQRLARHRM 190
Query: 297 FN--NINPNADSVKLDWVEY--LMSLTNVNHKT-VVLGMISQLKENRYFLEDPTGIVQLD 351
F + A + + + E L L H+T V+G +SQL+++R+FLED TG +Q+D
Sbjct: 191 FTKPSFAAGARASERTYCEITPLTGLLGCAHQTRYVMGCLSQLEDDRFFLEDLTGQIQVD 250
Query: 352 LSQTSYHPGLYTENCIVLVEGHY--KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPS 409
++ + GLYTENCIV+ EG +D + V ALGFPP E+ + +R + + +G
Sbjct: 251 VTNAATSSGLYTENCIVVAEGEVRKRDGVFEVRALGFPPAESREETRSATNHVDFFGA-G 309
Query: 410 PVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNP 469
+S V+R+T+ E M V+L+DV LD + L + F+GF ++ T P
Sbjct: 310 RLSPSDVSRLTEDEAAASEDMFVVLADVWLDKEATFKRL----RTVFEGF---DSLETIP 362
Query: 470 CRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGT 529
+ F + + + + E +F+ P +
Sbjct: 363 GMFVFMGDFTSEPFGPTKYDYSGYAAGFDQLATLIEDFPRLRQEARWVFVPGPG---DPG 419
Query: 530 VTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 589
V + + P L +T + +P A+NP R++Y SQ+++ +RE+L S+M RNCI P
Sbjct: 420 VAAALPRPPLLPSLTGRLRDALPRVAFASNPARIRYKSQDLVFMREDLQSRMRRNCILPP 479
Query: 590 ---------------------------------------------EEGD----------I 594
+EGD +
Sbjct: 480 TELDDVRGKDIRAKEKDIAAGGGGSAADAAFDAARDDEMDAETDADEGDDEPSEWERRPL 539
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQN-TDCIF 653
+H TLV Q L LPL PVYW A+ LYP P ++LGD+ + D
Sbjct: 540 FRHLAATLVQQAHLAPLPLAQLPVYWEHDHAMRLYPAPHCLVLGDRTEQQALAKFEDTEL 599
Query: 654 INP 656
+NP
Sbjct: 600 VNP 602
Score = 55.8 bits (133), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 60/106 (56%), Gaps = 9/106 (8%)
Query: 35 SVISAFDIPQFDYDPDLKKF---KLVDKKRKLCADS-DAKSKLFRERYNIIRQRTLRHSL 90
+++ AFD+P+F YD K F + R +CA S D+K +L+RER+ +++QR RH +
Sbjct: 131 TIVDAFDVPRFTYDTQRKVFHEDAAGPRARSVCATSADSKIELYRERFLLLQQRLARHRM 190
Query: 91 FN--NINPNADSVKLDWVEY--LMSLTNVNHKT-VVLGMISQLKEN 131
F + A + + + E L L H+T V+G +SQL+++
Sbjct: 191 FTKPSFAAGARASERTYCEITPLTGLLGCAHQTRYVMGCLSQLEDD 236
>gi|302826241|ref|XP_002994634.1| hypothetical protein SELMODRAFT_236997 [Selaginella moellendorffii]
gi|300137271|gb|EFJ04303.1| hypothetical protein SELMODRAFT_236997 [Selaginella moellendorffii]
Length = 523
Score = 179 bits (454), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 126/425 (29%), Positives = 206/425 (48%), Gaps = 37/425 (8%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
+S++ V+ AF +P+F YDP K F +K + D+ +KS L+++R ++ QR +R
Sbjct: 78 SSQQNALLVVDAFKLPRFCYDPIRKMFYRYNKTPSVHGDARSKSALYKDRLQLLHQRLIR 137
Query: 294 HSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
F + D + E L SL + V+G++SQL++ RY+LED + + +D
Sbjct: 138 DRHFAKPAFDMDGSRSGTCELSSLQSLLGCIGRRWVMGIVSQLEDGRYYLEDLSATIPID 197
Query: 352 LSQTSYHPGLYT---ENC---IVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIW 405
LSQ + NC I + H+ L + GFPP E S + +
Sbjct: 198 LSQAISFGKISNGELHNCCGRIAASKRHFSGSFL-ISTCGFPPLEGRNISLSVTAGLDFF 256
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG------- 458
G + +S ++R+ +E+ N M V++SDV LD+++ NL E + F+
Sbjct: 257 GAGA-LSYDEISRLEVLERKAVNDMFVVISDVWLDDEQTMRNL-EVVLDGFENVDVVPSV 314
Query: 459 FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
F+ + PC + + S L + L + I+ H ++ K F
Sbjct: 315 FILMGNFLSRPCNLSFHSFGELRSHFDKLGTL------------IASHTRISSTSK---F 359
Query: 519 LIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 578
+++P G +S + PALP + T E VPN T A+NPCR+++ SQEI++ RE LL
Sbjct: 360 VLIPGPEDPGP-SSVLPRPALPSYFTKELAKHVPNVTFASNPCRIRFFSQEIVLFRENLL 418
Query: 579 SKMCRNCIKFPEEGDIS---KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
+M R CI P + + + +H V T+ Q L LPL P+ W A+ LYP P +
Sbjct: 419 YRMRRLCIVTPSDEETTEPFEHLVATITHQSHLCPLPLTSQPIVWEYDHAMRLYPTPHTI 478
Query: 636 ILGDQ 640
+LGD+
Sbjct: 479 VLGDR 483
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 55/106 (51%), Gaps = 2/106 (1%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
+S++ V+ AF +P+F YDP K F +K + D+ +KS L+++R ++ QR +R
Sbjct: 78 SSQQNALLVVDAFKLPRFCYDPIRKMFYRYNKTPSVHGDARSKSALYKDRLQLLHQRLIR 137
Query: 88 HSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
F + D + E L SL + V+G++SQL++
Sbjct: 138 DRHFAKPAFDMDGSRSGTCELSSLQSLLGCIGRRWVMGIVSQLEDG 183
>gi|58269040|ref|XP_571676.1| epsilon DNA polymerase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134112784|ref|XP_774935.1| hypothetical protein CNBF1000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338818003|sp|P0CN25.1|DPB2_CRYNB RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|338818004|sp|P0CN24.1|DPB2_CRYNJ RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|50257583|gb|EAL20288.1| hypothetical protein CNBF1000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227911|gb|AAW44369.1| epsilon DNA polymerase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 541
Score = 178 bits (452), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 129/438 (29%), Positives = 208/438 (47%), Gaps = 32/438 (7%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+E+N E FSV+ +FD+P YDP F + + + ++S RER+ II++
Sbjct: 90 SEVNVESH-FSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRSAFLRERWAIIKEI 148
Query: 291 TLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
LR+ F + A+ +KL + L L ++ GM+++ +E + LED
Sbjct: 149 ILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLFGMLARNEEGKLCLEDGES 206
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIW 405
V LD+ GL+TE C+VL+EG Y ++ + V A+G PP E +R G+ +
Sbjct: 207 RVVLDMEDAVPGEGLFTEGCMVLIEGEYTVEETVRVLAMGHPPSERRNIARSLHGHVDFL 266
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI-----TSEFQGFV 460
GG + VSLK + N VILSDV LD+ + L + T+E++ V
Sbjct: 267 GGGA-VSLKEEQKYNPTVLANTQISFVILSDVWLDHPRTMPALRQMFEGYANTAEYRPMV 325
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLI 520
+ N C+ + QE L + + P H S F+
Sbjct: 326 --FVLCGNFCQGGWEGQEGLKRYSRGFNSLAELLQSIP-----LLHSSH--------FVF 370
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
VP + T+ + P+LP T+ +PN+ +NPCR++Y EI++ RE+L+ K
Sbjct: 371 VPGPSDPWSSTT-LPRPSLPSAFTTRLSNRIPNARFVSNPCRLKYFGMEIVICREDLMGK 429
Query: 581 MCRN--CIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILG 638
M RN +K EE ++ ++ V+T++ Q L LP+++ P W AL LYP+P V+L
Sbjct: 430 MMRNLVVVKEGEEMNMKRYLVQTILDQAHLSPLPISVRPTLWEYDHALRLYPMPSAVVLA 489
Query: 639 DQLNAYTIQNTDCIFINP 656
D+ Y + C NP
Sbjct: 490 DKYERYELTYEGCHVFNP 507
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 11 TYDLIEFTTNECCR----TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
Y+ ++ T E + +E+N E FSV+ +FD+P YDP F + +
Sbjct: 72 AYENLQLGTTEDTQVADPSEVNVESH-FSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQ 130
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVL 122
+ ++S RER+ II++ LR+ F + A+ +KL + L L ++
Sbjct: 131 ASSRSAFLRERWAIIKEIILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLF 188
Query: 123 GMISQLKEN 131
GM+++ +E
Sbjct: 189 GMLARNEEG 197
>gi|401882688|gb|EJT46935.1| epsilon DNA polymerase [Trichosporon asahii var. asahii CBS 2479]
Length = 591
Score = 177 bits (448), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 134/459 (29%), Positives = 212/459 (46%), Gaps = 48/459 (10%)
Query: 225 SSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERY 284
+ E +E+N E FSV+ +F++P +DP F + +K + + ++S RER+
Sbjct: 69 TQEADPSEVNVEAH-FSVVDSFNMPPVRFDPVRAAFSVAKRKPSIAGQAASRSSYLRERW 127
Query: 285 NIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKT----VVLGMISQLKENRYF 340
IIR+ LR+ F P D L S N+ + ++ GM+S+ E R
Sbjct: 128 GIIREIILRNENFTP--PALGGQDRDNYLKLTSTRNLLGRAGQLFLLFGMLSRNPEGRLT 185
Query: 341 LEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYF 399
LED G V LD+ GL+TE C+VL+EG Y D L V A+G PP E +R
Sbjct: 186 LEDGDGRVVLDMEDAVPGEGLFTEGCMVLIEGEYTVDDTLRVLAMGHPPSEKRHIARGLH 245
Query: 400 GNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGF 459
G+ + GG + +S+K + N V+LSDV LD+ L F+G+
Sbjct: 246 GHVDFLGGGA-MSVKEEKKYQPTVLANTQVSFVVLSDVWLDHPSTLVALRRL----FEGY 300
Query: 460 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK--FPEEGDISKHVSKNNGEKDII 517
+ +Y ++ +C N ++ + EG + + + N D+I
Sbjct: 301 AEAA---------EY---------RPMVFVLCGNFVQRGWEGEGGLKQCTNGFNALTDLI 342
Query: 518 ----------FLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS 567
F+ VP T T+ + PALPK T +P + +NPCR++Y
Sbjct: 343 LSFPLLLQSHFVFVPGPLDPWTGTT-LPRPALPKNFTQRLASRIPKAKFVSNPCRLRYFG 401
Query: 568 QEILVVREELLSKMCRNC--IKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGA 625
Q+I++ RE+L+ +M RN +K EG K + T++ Q L LP ++ P W A
Sbjct: 402 QDIVICREDLMGRMLRNLVGVKSANEGADMKRY--TILDQAHLSPLPESVRPTLWEFDHA 459
Query: 626 LSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRN 664
L LYP+P V+L D+ Y + C NP ++VR+
Sbjct: 460 LRLYPMPTAVVLADKYERYELTYEGCHVFNPGRFSSVRH 498
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 19 TNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERY 78
T E +E+N E FSV+ +F++P +DP F + +K + + ++S RER+
Sbjct: 69 TQEADPSEVNVEAH-FSVVDSFNMPPVRFDPVRAAFSVAKRKPSIAGQAASRSSYLRERW 127
Query: 79 NIIRQRTLRHSLFN 92
IIR+ LR+ F
Sbjct: 128 GIIREIILRNENFT 141
>gi|405121150|gb|AFR95919.1| epsilon DNA polymerase [Cryptococcus neoformans var. grubii H99]
Length = 541
Score = 176 bits (446), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 208/438 (47%), Gaps = 32/438 (7%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+E+N E FSV+ +FD+P YDP F + + + +++ RER+ II++
Sbjct: 90 SEVNVESH-FSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRASFLRERWAIIKEI 148
Query: 291 TLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
LR+ F + A+ +KL + L L ++ GM+++ +E + LED
Sbjct: 149 ILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLFGMLARNEEGKLCLEDGES 206
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIW 405
V LD+ GL+TE C+VL+EG Y ++ + V A+G PP E +R G+ +
Sbjct: 207 RVVLDMEDAVPGEGLFTEGCMVLIEGQYTVEETVRVLAMGHPPSERRDIARSLHGHVDFL 266
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI-----TSEFQGFV 460
GG + VSLK + N VILSDV LD+ + L + T+E++ V
Sbjct: 267 GGGA-VSLKEEQKFNPTVLANTQISFVILSDVWLDHPRTMPALRQMFEGYANTAEYRPMV 325
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLI 520
+ N C+ + Q+ L + + P H S F+
Sbjct: 326 --FVLCGNFCQGGWEGQDGLKRYSRGFNYLAELLQSIP-----LLHSSH--------FVF 370
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
VP + T+ + P+LP T+ +PN+ +NPCR++Y EI++ RE+L+ K
Sbjct: 371 VPGPSDPWSSTT-LPRPSLPSAFTTRLSNRIPNAKFVSNPCRLKYFGMEIVICREDLMGK 429
Query: 581 MCRN--CIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILG 638
M RN +K EE ++ ++ V+T++ Q L LP+++ P W AL LYP+P V+L
Sbjct: 430 MMRNLVVVKEGEEMNMKRYLVQTILDQAHLSPLPISVRPTLWEYDHALRLYPMPSAVVLA 489
Query: 639 DQLNAYTIQNTDCIFINP 656
D+ Y + C NP
Sbjct: 490 DKYERYELTYEGCHVFNP 507
Score = 46.2 bits (108), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 11 TYDLIEFTTNECCR----TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
Y+ ++ T E + +E+N E FSV+ +FD+P YDP F + +
Sbjct: 72 AYENLQLGTTEDTQVADPSEVNVESH-FSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQ 130
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVL 122
+ +++ RER+ II++ LR+ F + A+ +KL + L L ++
Sbjct: 131 ASSRASFLRERWAIIKEIILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLF 188
Query: 123 GMISQLKEN 131
GM+++ +E
Sbjct: 189 GMLARNEEG 197
>gi|167522699|ref|XP_001745687.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163776036|gb|EDQ89658.1| predicted protein [Monosiga brevicollis MX1]
Length = 460
Score = 175 bits (444), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 135/450 (30%), Positives = 207/450 (46%), Gaps = 84/450 (18%)
Query: 249 PQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN--INPNADS 306
P+ Y D K F D+ + +DAK+ LFR+RY++IRQR LRH +F I+ +
Sbjct: 13 PRLTYYVDKKLFLPRDEPASIAGTADAKAVLFRDRYHLIRQRLLRHPVFAEGLIDDQGNL 72
Query: 307 VK--LDWVEYLMS----LTNVNHK-TVVLGMISQLKENRYFLEDPTGIVQLDL------- 352
VK L + L++ LT + VVLG+++Q+ + LED G++ L L
Sbjct: 73 VKQTLTPINALIAKSGMLTGQQRQIAVVLGLLTQIDNGKLALEDLDGVINLHLPTPDELR 132
Query: 353 ---SQTS--------------YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNS 395
+QT +H GLYT+NCIV+V G+++D +G PP EA ++
Sbjct: 133 AFYTQTMGYSEADITPEVLNIFHEGLYTDNCIVVVRGYFEDGRFVALTIGMPPAEARADT 192
Query: 396 RLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNEN-AMIVILSDVHLDNDKVRNNLCEFIT- 453
F N +GG S +R + + EN AM+ LSD +LD+ V N +
Sbjct: 193 LAAFPGLNFFGG----SYNHRDRASLLRSERENEAMVCFLSDFYLDDPDVLRNFDHMLAG 248
Query: 454 -SEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
S Q + + N +CS+ P+ D+
Sbjct: 249 FSAIQSYPTAFVLMGN-----FCSE--------------------PQRSDVHA------- 276
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+I + P+ G V + P LP + F FV ATNPCR++Y +Q I+V
Sbjct: 277 ---VIQVPGPQDPGAGNVLPR---PPLPSALVRRFMTFVKRVHNATNPCRIRYGTQGIVV 330
Query: 573 VREELLSKMCRNCIKFP------EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGAL 626
R+ +++KM RN + P +E + + +TLV Q L LPL++ P+ W +L
Sbjct: 331 FRDNIVNKMRRNVMVKPFDNNSDDEDMLPQMLAKTLVDQAHLCPLPLHVRPILWQYDQSL 390
Query: 627 SLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
SLYP+P+LV+LGD Y C +NP
Sbjct: 391 SLYPVPELVVLGDDGAGYETLYHGCRVVNP 420
Score = 49.3 bits (116), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 10/99 (10%)
Query: 43 PQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN--INPNADS 100
P+ Y D K F D+ + +DAK+ LFR+RY++IRQR LRH +F I+ +
Sbjct: 13 PRLTYYVDKKLFLPRDEPASIAGTADAKAVLFRDRYHLIRQRLLRHPVFAEGLIDDQGNL 72
Query: 101 VKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTS-GLL 138
VK +LT +N GM++ + I GLL
Sbjct: 73 VK-------QTLTPINALIAKSGMLTGQQRQIAVVLGLL 104
>gi|321259866|ref|XP_003194653.1| epsilon DNA polymerase [Cryptococcus gattii WM276]
gi|317461125|gb|ADV22866.1| epsilon DNA polymerase, putative [Cryptococcus gattii WM276]
Length = 542
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 127/438 (28%), Positives = 207/438 (47%), Gaps = 32/438 (7%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+E+N E FSV+ +F +P YDP F + + ++S RER+ II++
Sbjct: 90 SEVNVESH-FSVVDSFSMPAIRYDPVRSGFVQSKVPPSVAGQASSRSTFLRERWAIIKEI 148
Query: 291 TLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
LR+ F + A+ +KL + L L ++ GM+++ +E + LED G
Sbjct: 149 ILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLFGMLARNEEGKLCLEDGEG 206
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIW 405
V LD+ GL+TE C+VL+EG Y ++ + V A+G PP E +R G+ +
Sbjct: 207 RVVLDMEDAVPGEGLFTEGCMVLIEGEYTAEETVRVLAMGHPPSERRDIARSLHGHVDFL 266
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI-----TSEFQGFV 460
GG + VSLK + N VILSDV LD+ + L + + T+E++ V
Sbjct: 267 GGGA-VSLKEEQKYNSTVLANTQISFVILSDVWLDHPRTMPALRQMLEGYANTAEYRPMV 325
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLI 520
+ N C+ + +E L + + P H S F+
Sbjct: 326 --FILCGNFCQGGWDGEEGLKRYTRGFNSLAELLQSIP-----LLHSSH--------FVF 370
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
VP + T+ + P+LP T+ +PN+ +NPCR++Y EI++ RE+L+ K
Sbjct: 371 VPGPSDPWSSTT-LPRPSLPSAFTTRLSNRIPNAKFVSNPCRLKYFGMEIVICREDLMGK 429
Query: 581 MCRN--CIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILG 638
M RN +K EE ++ ++ V+T++ Q L P+++ P W AL LYP+P V+L
Sbjct: 430 MMRNLVVVKEGEEINMKRYLVQTILDQAHLTPFPISVRPTLWEYDHALRLYPMPSAVVLA 489
Query: 639 DQLNAYTIQNTDCIFINP 656
D+ Y + C NP
Sbjct: 490 DKYERYELTYEGCHVFNP 507
>gi|397621191|gb|EJK66164.1| hypothetical protein THAOC_12930 [Thalassiosira oceanica]
Length = 411
Score = 175 bits (443), Expect = 8e-41, Method: Compositional matrix adjust.
Identities = 125/399 (31%), Positives = 205/399 (51%), Gaps = 42/399 (10%)
Query: 279 LFRERYNIIRQRTLRHSLFN-----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQ 333
+F +RY +I+QR LR +F +N L VE L+ + + +LGMI Q
Sbjct: 1 MFAQRYALIQQRILRQDIFQPKLVQGMNSEGAHHTLTPVESLLGRSG---RRFLLGMIVQ 57
Query: 334 LKENRYFLEDPTGIVQLDLSQTS-YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEAS 392
++E +Y+LED TG + L+ S++S G TEN IVL+EG D +L+V LG P E
Sbjct: 58 VEERKYYLEDHTGQIPLNFSESSLLTDGFITENSIVLIEGEAIDGVLYVHNLGSPIVENR 117
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTKME-KNNENAMIVILSDVHLDNDKVRNNLCEF 451
+++ G QN S SL + + + E K+ + M V+LSDVHLD+ V +
Sbjct: 118 QDAINAIGLQNTDMFNSIGSLGELENLREQEIKHGQEGMFVVLSDVHLDSPAVVEKIDRM 177
Query: 452 IT--SEFQG---FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKH 506
+ S+F FV + P + ++ ++ ++L + +C++ DI+
Sbjct: 178 LEGYSDFSPLPIFVFMGNFTSKPLSGE-GTRAMMSYFDDLTNVICKHP-------DIA-- 227
Query: 507 VSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYC 566
+D F+ VP G ++ + +P +ITS + V ++ A+NPCR++Y
Sbjct: 228 -------RDGRFVFVPGPNDAG-ISGILPRGPIPNYITSSLRSKVRHAIFASNPCRMRYF 279
Query: 567 SQEILVVREELLSKMCRNCIKFPEEGD---------ISKHFVRTLVSQGTLVSLPLNLCP 617
S+EI+ R++L+ KM R+ + P E + +S+H ++T++ QG L LPL P
Sbjct: 280 SKEIVFFRDDLVGKMRRHTLIEPREDEDEMTSGHRQLSRHAIKTVLDQGHLSPLPLLASP 339
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+YW AL LYP PD +I+GD++ Y +C INP
Sbjct: 340 IYWQHDHALRLYPFPDALIVGDRVEQYYENYEECDTINP 378
>gi|392573772|gb|EIW66910.1| hypothetical protein TREMEDRAFT_45435 [Tremella mesenterica DSM
1558]
Length = 540
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 127/446 (28%), Positives = 211/446 (47%), Gaps = 48/446 (10%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+E+N E FSV+ AFD+P +D F L + +++ RER+ II++
Sbjct: 90 SEVNIETH-FSVVDAFDMPAVHFDAVRGGFTTSKHTPSLAGQASSRAAFLRERWGIIKEI 148
Query: 291 TLRHSLFNNINPNA-------DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLED 343
LR+ N P A + +KL L L V ++ GM+S+ E R LED
Sbjct: 149 ILRN---ENFTPPAIAGHDRDNYLKLTSTRNL--LGRVGQLFLLFGMLSRDPEGRLCLED 203
Query: 344 PTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQ 402
G V+LD+ G++TE C+VL+EG Y D+ + V A+G PP E + +R G+
Sbjct: 204 GEGRVRLDMDDAVPGEGMFTEGCMVLIEGEYTIDETIRVLAMGHPPSEKREVARSLHGHV 263
Query: 403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN 462
+ GG + +SLK + N V+LSDV LD+ + L + F+G+
Sbjct: 264 DFIGGGA-ISLKEEQKFLPTVAVNTQVSFVVLSDVWLDHPRCLPALRKM----FEGYA-- 316
Query: 463 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII----- 517
++ P C S+ EEG + ++ + N D++
Sbjct: 317 ESVEFRPMAFVLCGN---------FSQKGWET----EEG-LKRYSNGFNALTDLLVSFPL 362
Query: 518 -----FLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
F+ VP ++ +S + PALP +++ + +PN +NPCR++Y E+++
Sbjct: 363 LQSSHFIFVPGP-LDPWSSSTLPRPALPSLLSARLKQRLPNVHFVSNPCRIRYFGMELVI 421
Query: 573 VREELLSKMCRNC--IKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
RE+L+ +M RN +K + D+ ++ V+T++ Q L LPL++ P W AL LYP
Sbjct: 422 CREDLMGRMVRNLVGVKDVKGADMKRYLVQTILDQTHLSPLPLSVRPTLWEFDHALRLYP 481
Query: 631 LPDLVILGDQLNAYTIQNTDCIFINP 656
+P ++L D+ Y + C NP
Sbjct: 482 MPSALVLADKYERYELTYEGCHVFNP 507
>gi|328769828|gb|EGF79871.1| hypothetical protein BATDEDRAFT_25340 [Batrachochytrium
dendrobatidis JAM81]
Length = 648
Score = 175 bits (443), Expect = 9e-41, Method: Compositional matrix adjust.
Identities = 128/445 (28%), Positives = 213/445 (47%), Gaps = 32/445 (7%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
T I Q S+I A+ +P Y D F V K A +D+++ LFR+R+++++QR
Sbjct: 173 TNIQEISQCISIIDAYQVPHNQYWADKNTFISVTSKETPVASADSRTALFRDRFDLLKQR 232
Query: 291 TLRHSLFNNINPNADSVKLDWVEYLMSLTNVN-HKTVVLGMISQLKENRYFLEDPTGIVQ 349
LR+ F AD + ++ L + ++ GM++ +++ Y LED +Q
Sbjct: 233 LLRNEAFRVPTFTADDSSYFQITPIIHLKGKKPGRYLLFGMLTSIQDGNYHLEDTDAFIQ 292
Query: 350 LDLSQ-TSYHPGLYTENCIVLVEGHYKDQ-ILHVDALGFPPPEASKNSRLYFGNQ-NIWG 406
L+ + PG+ T NC +L++G Y DQ VD +G P PE ++S FGN + +G
Sbjct: 293 LEFQKIMQQGPGMITRNCFMLIQGDYTDQGTFKVDVIGHPLPERREDSISAFGNNVDFFG 352
Query: 407 GPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVP----- 461
G + V + K+E + + +V +SDV LD +V + L + VP
Sbjct: 353 GARFSDEQHV--LEKIELDAVDISMVFISDVWLDQTRVLDKLRILLKGFSDAVVPLVFVF 410
Query: 462 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIV 521
+ ++ P Y E + E + +FP + + F+ V
Sbjct: 411 SGNFSSTP--YIYNGSESKRYKAEGFDNLADLISEFPLIAEQAH------------FVFV 456
Query: 522 PKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM 581
P + +P +PK +T + + V ++ T+PCR++YC+QEI++ R++L++ M
Sbjct: 457 PGPHDPWAPNILPRAP-IPKSLTEKIRQKVVHTYFTTSPCRIKYCTQEIVIFRDDLVNTM 515
Query: 582 CRNCIKFP----EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVIL 637
R+CI P + + H V TL+ Q LV LP++L P YW AL LYP P L+IL
Sbjct: 516 RRHCI-LPVSENHDSPLEGHLVSTLLDQSHLVPLPIDLKPRYWDYDHALRLYPQPHLLIL 574
Query: 638 GDQLNAYTIQNTDCIFINP-VFHNT 661
D+ + Y + + NP F NT
Sbjct: 575 ADKYDPYQQEYEGTLCANPGSFPNT 599
Score = 53.1 bits (126), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 7/126 (5%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
+PS D IE TTN I Q S+I A+ +P Y D F V K A
Sbjct: 161 DPSNEADEIEPTTN------IQEISQCISIIDAYQVPHNQYWADKNTFISVTSKETPVAS 214
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVN-HKTVVLGMI 125
+D+++ LFR+R+++++QR LR+ F AD + ++ L + ++ GM+
Sbjct: 215 ADSRTALFRDRFDLLKQRLLRNEAFRVPTFTADDSSYFQITPIIHLKGKKPGRYLLFGML 274
Query: 126 SQLKEN 131
+ +++
Sbjct: 275 TSIQDG 280
>gi|406700722|gb|EKD03887.1| epsilon DNA polymerase [Trichosporon asahii var. asahii CBS 8904]
Length = 579
Score = 174 bits (442), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 131/447 (29%), Positives = 205/447 (45%), Gaps = 53/447 (11%)
Query: 225 SSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERY 284
+ E +E+N E FSV+ +F++P +DP F + +K + + ++S RER+
Sbjct: 64 TQEADPSEVNVEAH-FSVVDSFNMPPVRFDPVRAAFSVAKRKPSIAGQAASRSSYLRERW 122
Query: 285 NIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDP 344
IIR+ LR+ N P A + D YL ++ GM+S+ E R LED
Sbjct: 123 GIIREIILRN---ENFTPPALGGQ-DRDNYLKLF-------LLFGMLSRNPEGRLTLEDG 171
Query: 345 TGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQN 403
G V LD+ GL+TE C+VL+EG Y D L V A+G PP E +R G+ +
Sbjct: 172 DGRVVLDMEDAVPGEGLFTEGCMVLIEGEYTVDDTLRVLAMGHPPSEKRHIARGLHGHVD 231
Query: 404 IWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNS 463
GG + +S+K + N V+LSDV LD+ L F+G+ +
Sbjct: 232 FLGGGA-MSVKEEKKYQPTVIANTQVSFVVLSDVWLDHPSTLVALRRL----FEGYAEAA 286
Query: 464 TMATNPCRVQYCSQEILVVREELLSKMCRNCIK--FPEEGDISKHVSKNNGEKDII---- 517
++ +C N ++ + EG + ++ + N D+I
Sbjct: 287 EY------------------RPMVFVLCGNFVQRGWEGEGGLKQYTNGFNALTDLILSFP 328
Query: 518 ------FLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
F+ VP T T+ + PALPK T +P + +NPCR++Y Q+I+
Sbjct: 329 LLLQSHFVFVPGPLDPWTGTT-LPRPALPKNFTQRLASRIPKAKFVSNPCRLRYFGQDIV 387
Query: 572 VVREELLSKMCRNC--IKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLY 629
+ RE+L+ +M RN +K EG K + T++ Q L LP ++ P W AL LY
Sbjct: 388 ICREDLMGRMLRNLVGVKSANEGADMKRY--TILDQAHLSPLPESVRPTLWEFDHALRLY 445
Query: 630 PLPDLVILGDQLNAYTIQNTDCIFINP 656
P+P V+L D+ Y + C NP
Sbjct: 446 PMPTAVVLADKYERYELTYEGCHVFNP 472
Score = 50.1 bits (118), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/74 (32%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 19 TNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERY 78
T E +E+N E FSV+ +F++P +DP F + +K + + ++S RER+
Sbjct: 64 TQEADPSEVNVEAH-FSVVDSFNMPPVRFDPVRAAFSVAKRKPSIAGQAASRSSYLRERW 122
Query: 79 NIIRQRTLRHSLFN 92
IIR+ LR+ F
Sbjct: 123 GIIREIILRNENFT 136
>gi|308470244|ref|XP_003097356.1| CRE-POLE-2 protein [Caenorhabditis remanei]
gi|308240205|gb|EFO84157.1| CRE-POLE-2 protein [Caenorhabditis remanei]
Length = 520
Score = 174 bits (441), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 121/436 (27%), Positives = 213/436 (48%), Gaps = 30/436 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
+C ++ +V AF + +D+DP+L+K + L ADS + S R+R+ +
Sbjct: 77 QCKSKGTQDAGKLLNVFDAFSLQPYDFDPELRKMVVRKGTTTLAADSSSFSHATRQRFLL 136
Query: 287 IRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
++QR R + + S K E L + T VVLGM++Q K + Y +ED +G
Sbjct: 137 VKQRAARCA-------SLKSFKFTTCEILCNSTKTLKSVVVLGMLTQQKADCYHIEDLSG 189
Query: 347 IVQLDLSQ-TSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG-NQNI 404
++++ + T +H L+ E+ I + EG++++ +L V+ + P E+++ +R N+N
Sbjct: 190 SIEVEFKEDTKFHHALFHEHSIAIFEGNFENSVLKVNEVAMVPVESAEMTRKELSSNENW 249
Query: 405 WGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNST 464
+GG ++ + R+ E+ ++ LSDV LD+ K L + + G+
Sbjct: 250 FGGEDKIAFRCSERLRSALAKQEDTSMIFLSDVFLDDVKTMRALNKLLI----GYKDQPP 305
Query: 465 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKI 524
+A C +CSQ +LL + R + + K + IF+ P
Sbjct: 306 VAIILCG-NFCSQPRQTDTIDLLDRGFRYL------ANQLMQMKKEYEKTQFIFVPGPD- 357
Query: 525 YVEGTVTSKVLSPALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMC 582
+ V S + P LP + F+ P + T A+NPCR+Q+ SQEI+V R +L+ KMC
Sbjct: 358 --DPFVDSVLPRPHLPSLL---FKHVSPIISCTFASNPCRIQFASQEIVVFRNDLIKKMC 412
Query: 583 RNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN 642
R+ I I + R+++SQ L LP ++ P+ +LSL+PLPDL++ D+
Sbjct: 413 RHSINAITVESIPSRYARSVLSQAHLCPLPQHITPILPDFSSSLSLHPLPDLLVTADRFE 472
Query: 643 AYT--IQNTDCIFINP 656
+ + +D I NP
Sbjct: 473 TFNEKVTGSDTIVSNP 488
Score = 53.5 bits (127), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/119 (28%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 72
+LI T +C ++ +V AF + +D+DP+L+K + L ADS + S
Sbjct: 69 ELIRDTFRQCKSKGTQDAGKLLNVFDAFSLQPYDFDPELRKMVVRKGTTTLAADSSSFSH 128
Query: 73 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
R+R+ +++QR R + + S K E L + T VVLGM++Q K +
Sbjct: 129 ATRQRFLLVKQRAARCA-------SLKSFKFTTCEILCNSTKTLKSVVVLGMLTQQKAD 180
>gi|256070995|ref|XP_002571827.1| DNA polymerase epsilon subunit B [Schistosoma mansoni]
Length = 637
Score = 172 bits (437), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 150/523 (28%), Positives = 236/523 (45%), Gaps = 104/523 (19%)
Query: 229 CRTEINSEEQIFSVISAFDIPQFDYDPDLKKF------KLVDKKRKLCADSDAKSKLFRE 282
CR E +++ + VI AF +P F + LKKF + + DAK+ L+
Sbjct: 87 CRAEHSTDNIVLYVIDAFSVPYFRFSKPLKKFVPFVPADSSENRLIFPVSPDAKAFLYAH 146
Query: 283 RYNIIRQRTLRHSLFNNI----NPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENR 338
RY +I QR LRH LF+ ++ + +L +EYL++ + TVVLG+ISQL+E +
Sbjct: 147 RYEVIYQRILRHQLFSQTAALDGSHSTNYRLRQIEYLLASGSRIDSTVVLGLISQLREGK 206
Query: 339 YFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLY 398
++ EDP+GIVQL+L Q +H GL E I L+EG Y ++IL+V +G PP E + SR
Sbjct: 207 WYAEDPSGIVQLNLQQAVFHEGLLPEGSIALIEGFYDEKILYVTGIGLPPCEPPEISRRA 266
Query: 399 FGNQNIWGGPSPVSLKSVNRMTKMEK------NNENAMIVILSDVHLDNDKVRNNLCEFI 452
F N +GG + + TKM K +AM+VIL + +LD R + + +
Sbjct: 267 FSVGNPFGGCDTSDSLAASLDTKMHKLLTTTQAGSDAMLVILGETNLD----RPDTLDQL 322
Query: 453 TSEFQG--------FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDIS 504
T+ F G F+ + + + C++ L++R L + FP+ S
Sbjct: 323 TTLFSGYSTCAPVAFILSGNFLSADSIGKTCTERRLILRRLLRQLITIFKNNFPDSE--S 380
Query: 505 KHVSKNNGEKDIIFLIVPK--IYVEGTVTSKVLSPALPKFITSEFQGFVPNST-----MA 557
+H S++N +I + P+ +Y + + P L + S+ + +S +A
Sbjct: 381 QHTSQSNQSPKLILIPGPEDPVYAPKHILPR---PGLGIDLISDNKDRSSSSCPPWLHLA 437
Query: 558 TNPCRVQYCSQEILVVREELLSKMCRNCIKFP---------------------------- 589
+NPCR++ ++EI++ R + R+CI P
Sbjct: 438 SNPCRLRLYTREIVIFRVNYSRLLVRHCIHLPTLNNLDSYVETSENIESSTSRENSETAV 497
Query: 590 ---EEG---------DISKH----------------FVRTLVSQGTLVSLPLNLCPVYWS 621
EG I +H R L SQ L+ L ++ PVYW
Sbjct: 498 DMDSEGVATTSSSTPSIKQHTTSKKYKTTNEYLGQCLARCLASQAHLLPLLGHIAPVYWY 557
Query: 622 QYGALSLYPLPDLVILGD-----QLNAYT---IQNTDCIFINP 656
ALSL PLP+LVI + LNA + +C FINP
Sbjct: 558 YDQALSLNPLPNLVIAIEPEPLANLNASQPGLVTTGNCRFINP 600
Score = 70.9 bits (172), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 6 DNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF------KLVDK 59
DN + L E EC R E +++ + VI AF +P F + LKKF +
Sbjct: 71 DNNRISKALCEAAVKEC-RAEHSTDNIVLYVIDAFSVPYFRFSKPLKKFVPFVPADSSEN 129
Query: 60 KRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNI----NPNADSVKLDWVEYLMSLTNV 115
+ DAK+ L+ RY +I QR LRH LF+ ++ + +L +EYL++ +
Sbjct: 130 RLIFPVSPDAKAFLYAHRYEVIYQRILRHQLFSQTAALDGSHSTNYRLRQIEYLLASGSR 189
Query: 116 NHKTVVLGMISQLKEN 131
TVVLG+ISQL+E
Sbjct: 190 IDSTVVLGLISQLREG 205
>gi|281202149|gb|EFA76354.1| putative DNA polymerase epsilon subunit B [Polysphondylium pallidum
PN500]
Length = 650
Score = 172 bits (436), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 146/453 (32%), Positives = 220/453 (48%), Gaps = 47/453 (10%)
Query: 223 KLSSECCRTEINSEEQIFS-------VISAFDIPQFDYDPDLKKFKLVDK-KRKLCADSD 274
KL+ E C +I S+ I S VI AF P F +D ++F V++ R L D+
Sbjct: 61 KLALEKCIKDIKSQNDITSIESDALKVIDAFSAPLFSFDLAKRQFLKVEQPNRSLHGDAK 120
Query: 275 AKSKLFRERYNIIRQRTLRHSLFNN-INPNAD-SVKLDWVEYLMSLTNVNHKTVVLGMIS 332
+K+ LFR RY + QR RH F+ + PN S + + L SL K VLG IS
Sbjct: 121 SKADLFRRRYLSVLQRVERHQFFSKPVLPNEQQSRDYNSITPLNSLLGNPGKKYVLGTIS 180
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEAS 392
Q++E Y +ED V LD+ ++ GL TEN IV G + + D + P E
Sbjct: 181 QIEEGSYHIEDLNKNVPLDIENATFS-GLVTENTIVQAYGELVNGVFVADEIMLPIVEER 239
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKN--NENAMIVILSDVHLDNDKVRN--NL 448
+ S + G P S K R+ + E++ E+ +V LSDV LD+ V N NL
Sbjct: 240 EESLRHLQGIGDMFGARP-SDKLAARLLEYERDPDTEDNALVFLSDVWLDSPMVMNKLNL 298
Query: 449 CEFITSEFQ--GFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKH 506
+ E F+ P +Q L + L+ + + K+P SK
Sbjct: 299 LFYGHKELPPFAFIFMGNFTEKPLIA--GTQYKLKTYFDQLASLIQ---KYPTVQSKSK- 352
Query: 507 VSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKF-----ITSEFQGFVPNSTMATNPC 561
F+ +P T + L LPKF F+ + N+ TNPC
Sbjct: 353 -----------FIFIPG----PTDPTGSLLNILPKFPIPDTFVRNFKNKISNAIFTTNPC 397
Query: 562 RVQYCSQEILVVREELLSKMCRNCIKFPE-EGDISKHFVRTLVSQGTLVSLPLNLCPVYW 620
R++YCSQEI++ R++++++M R+CIK P + DI++H + + S L +LPL + P+YW
Sbjct: 398 RIRYCSQEIVIFRDDIVNRMRRHCIKEPSNQLDITQHLLENICSNSHLCNLPLEIRPIYW 457
Query: 621 SQYGALSLYPLPDLVILGDQLNAYT--IQNTDC 651
+ ALSLYPLP++++L D+ N Y QNT+C
Sbjct: 458 NFDHALSLYPLPNVLVLSDKYNQYQHDYQNTNC 490
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 66/135 (48%), Gaps = 10/135 (7%)
Query: 6 DNPSCTYDLIEFTTNECCRTEINSEEQIFS-------VISAFDIPQFDYDPDLKKFKLVD 58
D + T + ++ E C +I S+ I S VI AF P F +D ++F V+
Sbjct: 50 DKSTLTGNYVDKLALEKCIKDIKSQNDITSIESDALKVIDAFSAPLFSFDLAKRQFLKVE 109
Query: 59 K-KRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN-INPNA-DSVKLDWVEYLMSLTNV 115
+ R L D+ +K+ LFR RY + QR RH F+ + PN S + + L SL
Sbjct: 110 QPNRSLHGDAKSKADLFRRRYLSVLQRVERHQFFSKPVLPNEQQSRDYNSITPLNSLLGN 169
Query: 116 NHKTVVLGMISQLKE 130
K VLG ISQ++E
Sbjct: 170 PGKKYVLGTISQIEE 184
>gi|224120420|ref|XP_002318325.1| predicted protein [Populus trichocarpa]
gi|222858998|gb|EEE96545.1| predicted protein [Populus trichocarpa]
Length = 518
Score = 171 bits (434), Expect = 9e-40, Method: Compositional matrix adjust.
Identities = 128/437 (29%), Positives = 202/437 (46%), Gaps = 48/437 (10%)
Query: 233 INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTL 292
++S VI AF IP+F YDP K+F + D+ AK+ L+++R+ ++ QR L
Sbjct: 93 VSSSTSAIRVIDAFLIPKFRYDPIKKQFHEHTGGLHIHGDASAKAALYKDRFLLLYQRVL 152
Query: 293 RHSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQL 350
R S F+ + + E + SL + V+G+ISQL++ ++LED
Sbjct: 153 RDSHFSKPAFHTEMSHYGSCEIAPIQSLVGQMGRRWVMGVISQLEDGHFYLED------- 205
Query: 351 DLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPS 409
L N IV+ EG + I V GFPP E S + +GG +
Sbjct: 206 ----------LTASNTIVVAEGEMLVNGIYQVITCGFPPLEERDKSLKSLAQHDFFGGGT 255
Query: 410 PVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-------FVPN 462
++ + R+ ++EK + N M VILSD+ +D+++ L E + F+ FV
Sbjct: 256 -LTKEETLRLAELEKRSLNDMFVILSDIWVDSEEAMGKL-ETVLDGFESQEVVPSLFVFM 313
Query: 463 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP 522
++PC + + S L + L +M I H + F+ +P
Sbjct: 314 GNFCSHPCNLSFHSFSSLRSQFGKLGQM------------IGAHQRLKEHSR---FMFIP 358
Query: 523 KIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMC 582
G T P LPK++T E Q +PN+ A+NPCRV++ +QEI+ R +LL +M
Sbjct: 359 GPEDAGPSTVLPRCP-LPKYLTEELQKHIPNAIFASNPCRVKFYTQEIVFFRHDLLYRMR 417
Query: 583 RNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
R+C+ P E D +H V T+ Q L LPL + P+ W+ L LYP P ++LGD
Sbjct: 418 RSCLMPPSTEETDDPFEHLVATITHQSHLCPLPLIVQPIIWNYDHCLHLYPSPHTIVLGD 477
Query: 640 QLNAYTIQNTDCIFINP 656
+ + T NP
Sbjct: 478 RSEQKAFKYTGITCFNP 494
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 2/107 (1%)
Query: 27 INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTL 86
++S VI AF IP+F YDP K+F + D+ AK+ L+++R+ ++ QR L
Sbjct: 93 VSSSTSAIRVIDAFLIPKFRYDPIKKQFHEHTGGLHIHGDASAKAALYKDRFLLLYQRVL 152
Query: 87 RHSLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
R S F+ + + E + SL + V+G+ISQL++
Sbjct: 153 RDSHFSKPAFHTEMSHYGSCEIAPIQSLVGQMGRRWVMGVISQLEDG 199
>gi|388582478|gb|EIM22783.1| hypothetical protein WALSEDRAFT_54005 [Wallemia sebi CBS 633.66]
Length = 821
Score = 169 bits (427), Expect = 7e-39, Method: Compositional matrix adjust.
Identities = 128/443 (28%), Positives = 214/443 (48%), Gaps = 45/443 (10%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAK-SKLFRERYNIIRQRTLRHSLFNNI 300
++ AF +P+++Y D K F + + A S A S+L+ +RYNII+Q LR+ F+
Sbjct: 106 IVDAFHMPRYNYTVDNKSF--TKQPTQSVAGSPASLSQLWLDRYNIIKQIILRNEFFSPP 163
Query: 301 NP-NADSVKLDWVEYLMSLTNV----NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQT 355
+ NA S D + S N+ N + ++ GM+SQ + R+ L+DP G+V LDL
Sbjct: 164 STINASSHDRDKYMKITSTKNLLGRLNQRFMLFGMLSQTVDGRHALQDPDGVVVLDLDDA 223
Query: 356 SYHPGLYTENCIVLVEGHY----KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
GL+TE VLV+G Y ++ + +G PP E S+ G+ + G +
Sbjct: 224 VPGEGLFTEGSFVLVDGMYILETEEPVFKAYGIGHPPSEKRSASQSVHGHVDFLG-LGGI 282
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVR---NNLCEFITSEFQGFVPNSTMATN 468
S+K ++EK+ ++ ++LSDV L+ + L E + F F P +
Sbjct: 283 SIKDQKLYKRIEKSLDHIGFIVLSDVWLNELSTQLSLRRLFEGYNNAFNDFRPLLFVLCG 342
Query: 469 PCRVQYCSQEILVVRE-----ELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPK 523
+ SQ I RE + SK+ +FP IS+H + +F+ P
Sbjct: 343 ----NFSSQPITTSREIREYQDSFSKLADIICEFPI---ISQHST-------FVFIPGPN 388
Query: 524 IYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR 583
++ + LPK T EF+ +P + ++NP R++Y SQ+I++ R++ +S++ R
Sbjct: 389 DPWSSGTSTTLPRTRLPKAFTREFESRIPRTHFSSNPTRIRYFSQDIVICRDDAMSRILR 448
Query: 584 NCIKFPEEG----------DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
N +K EE + K+ V+T++ Q L +N PV W AL LYP+P
Sbjct: 449 NNVKVKEESLADEEENVDIKLKKYLVQTIIDQAHLSPFSINSRPVLWEYDHALRLYPIPT 508
Query: 634 LVILGDQLNAYTIQNTDCIFINP 656
+IL D+ + Y ++ C NP
Sbjct: 509 SLILADKYDRYELKYEGCRVFNP 531
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 53/98 (54%), Gaps = 8/98 (8%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAK-SKLFRERYNIIRQRTLRHSLFNNI 94
++ AF +P+++Y D K F + + A S A S+L+ +RYNII+Q LR+ F+
Sbjct: 106 IVDAFHMPRYNYTVDNKSF--TKQPTQSVAGSPASLSQLWLDRYNIIKQIILRNEFFSPP 163
Query: 95 NP-NADSVKLDWVEYLMSLTN----VNHKTVVLGMISQ 127
+ NA S D + S N +N + ++ GM+SQ
Sbjct: 164 STINASSHDRDKYMKITSTKNLLGRLNQRFMLFGMLSQ 201
>gi|330796378|ref|XP_003286244.1| hypothetical protein DICPUDRAFT_77138 [Dictyostelium purpureum]
gi|325083749|gb|EGC37193.1| hypothetical protein DICPUDRAFT_77138 [Dictyostelium purpureum]
Length = 631
Score = 168 bits (426), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 133/462 (28%), Positives = 227/462 (49%), Gaps = 41/462 (8%)
Query: 212 NREQNNIMNWLKLSSECCRTEINS-------EEQIFSVISAFDIPQFDYDPDLKKF-KLV 263
N+ NNI++ + + E C I S E+ VI AFD P F YD + K+F K
Sbjct: 55 NQLNNNIIDQIAI--EKCFKLIESLNSSDAIEKDALKVIDAFDSPLFTYDTNTKQFLKCE 112
Query: 264 DKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDW--VEYLMSLTNV 321
+ ++ L S +KS ++R RY ++ QR R F+ +D K D+ + L SL
Sbjct: 113 NFEKSLHGSSKSKSDVYRRRYQMVLQRIERAESFSAPVLQSDKNKGDYQAITPLSSLLGS 172
Query: 322 NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHV 381
+ +LG IS ++E+++++ED V++++ GL T N I+ G Y +
Sbjct: 173 YGRKHILGTISVIEEDQFYIEDLNTKVKIEIP-PDIEIGLITINTIIRASGEYLEGTFIA 231
Query: 382 DALGFPPPEASKNSRLYFGNQNIWGG-PSPVSLKSVNRMTKMEKNNENAMIVILSDVHLD 440
D + PP E + S N +++G P +L+ + R K N I+ LSD+ LD
Sbjct: 232 DKIELPPKEEREISLKLLQNIDMFGERPQKKTLEQLERYEKEVDN----TILFLSDIWLD 287
Query: 441 NDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK----MCRNCIK 496
+++VR L +++ S ++ + P + + + ++ + L K + +K
Sbjct: 288 SERVRERL-DYLFSGYEEYPPFAIVLMG----NFTEHPLINGTQYDLKKNFNLLATLILK 342
Query: 497 FPEEGDISKHVSKNNGEKDIIFLIVPK-IYVEGTVTSKVLSPALPKFITSEFQGFVPNST 555
+P N K F+ VP G++ + + +P EFQ +P S
Sbjct: 343 YP------------NIHKFTQFIFVPGPTDPTGSLLNILPKLPIPNVFVKEFQSKIPKSI 390
Query: 556 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLN 614
TNPCR++YC+QEI++ R++L +KM R+CI P IS+H + ++ S L +L L
Sbjct: 391 FTTNPCRIRYCTQEIIIFRDDLTNKMRRHCIIQPSNNCHISQHLLESIWSNSHLCNLTLE 450
Query: 615 LCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
P+YW+ ++SLYPLPDL+++GD+ Y + +NP
Sbjct: 451 DKPIYWNYDHSMSLYPLPDLLVIGDKALQYEHSYCGTLSMNP 492
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/105 (33%), Positives = 55/105 (52%), Gaps = 3/105 (2%)
Query: 30 EEQIFSVISAFDIPQFDYDPDLKKF-KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 88
E+ VI AFD P F YD + K+F K + ++ L S +KS ++R RY ++ QR R
Sbjct: 84 EKDALKVIDAFDSPLFTYDTNTKQFLKCENFEKSLHGSSKSKSDVYRRRYQMVLQRIERA 143
Query: 89 SLFNNINPNADSVKLDW--VEYLMSLTNVNHKTVVLGMISQLKEN 131
F+ +D K D+ + L SL + +LG IS ++E+
Sbjct: 144 ESFSAPVLQSDKNKGDYQAITPLSSLLGSYGRKHILGTISVIEED 188
>gi|388853381|emb|CCF53001.1| related to DNA polymerase epsilon subunit B [Ustilago hordei]
Length = 657
Score = 167 bits (424), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 130/486 (26%), Positives = 212/486 (43%), Gaps = 69/486 (14%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
E E+ + F V SAF P+ +DP K F+ + + A+S R+RY+I
Sbjct: 140 ELTDGELPDPHRYFGVHSAFTQPKLAFDPIRKVFEPASIASTVLPTAAARSTFPRQRYHI 199
Query: 287 IRQRTLRHSLF------NNINPNADSV--KLDWVEYLMSLTNV-------NHKTVVLGMI 331
++ R+ F P++ S + + + M LT+ H+ ++ GM+
Sbjct: 200 LKSVISRNENFCPPLAIPTAAPSSSSSSSRNNTADGFMRLTSTKNLLGRQGHRFLLFGML 259
Query: 332 SQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPE 390
S + RY LED G V LDL G++TE ++LVEG Y D+ + V A+G PP E
Sbjct: 260 STSSDGRYELEDVDGAVGLDLHDAIPGEGIFTEGSLILVEGEYTVDERIRVFAIGHPPSE 319
Query: 391 ASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKM---------------------EKNNENA 429
+RL + + G P P L S + ++ E N+ +
Sbjct: 320 TRAQARLIHAHTDFLGPPQPPVLASASAPSRAGTSAPWRGAISVKEEAAFKVHEANHSDL 379
Query: 430 MIVILSDVHLDNDKVRNNLCEFITSEFQG-FVPNS-TMATNPCRVQYCSQEILVVREELL 487
VI SD+HLD+ K + + F+P + + N QY S +++ + +
Sbjct: 380 CFVIFSDLHLDHPKTMSAFATVLQGYVDADFIPFALVLCGNFASQQYSSADMIDMYKAGF 439
Query: 488 SKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFIT--- 544
+ + FP G DII + P+ + TS V P LP+ +
Sbjct: 440 AALGETLSSFP----------AIVGTSDIILVPGPQ---DPFATSLVPRPPLPQLVVQAL 486
Query: 545 -SEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG----------- 592
S+ + +A+NPCR+ Y SQ+I+V R++ L++ RN ++ +E
Sbjct: 487 LSKLERLHATIHLASNPCRISYFSQQIVVYRDDTLTRFLRNTVRIKDESQEPEREEREKG 546
Query: 593 --DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTD 650
D+ K V T++ Q LV L + PV W ALSLYP+P ++L D + Y +
Sbjct: 547 ERDLKKFLVSTVLDQAHLVPLAQRIRPVLWDHDHALSLYPMPTALVLADAYDRYELTYEG 606
Query: 651 CIFINP 656
C +NP
Sbjct: 607 CHVVNP 612
>gi|71016528|ref|XP_758907.1| hypothetical protein UM02760.1 [Ustilago maydis 521]
gi|46098338|gb|EAK83571.1| hypothetical protein UM02760.1 [Ustilago maydis 521]
Length = 632
Score = 166 bits (419), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 130/483 (26%), Positives = 208/483 (43%), Gaps = 70/483 (14%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
E E+ + F V SAF P+ +DP K F+ L + +S R+RY+I
Sbjct: 138 ELTDGELPDPHRYFGVHSAFTQPKLTFDPIRKVFEPTTLSATLLPTASTRSTFARQRYHI 197
Query: 287 IRQRTLRHSLF-NNINPNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKENR 338
++ LR+ F + S + + M LT+ + ++ GM+S + R
Sbjct: 198 LKGVILRNENFCPPLAIATASSSKNLADGFMKLTSTKNLLGRQGQRFLLFGMLSTSSDGR 257
Query: 339 YFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRL 397
Y LED G V LDL G++TE ++LVEG Y ++ +HV ALG PP E +R
Sbjct: 258 YELEDADGTVGLDLHDAIPGEGIFTEGSLILVEGEYTVEERIHVFALGHPPSETRAQARS 317
Query: 398 YFGNQNIWGGP---------------------SPVSLKSVNRMTKMEKNNENAMIVILSD 436
+ + G P +S+K E N+ + VI SD
Sbjct: 318 MHAHTDFLGPPQTPILEPAGAPSRVAARAPWRGAISVKEEAAFQVHEANHSDLCFVIFSD 377
Query: 437 VHLDNDKVRNNLCEFITSEFQG-----FVPNSTM-ATNPCRVQYCSQEILVVREELLSKM 490
+HLD+ K + F T QG F+P + M N QY S + + + + +
Sbjct: 378 LHLDHPK---TMAAFATV-LQGYVDADFIPFALMLCGNFASQQYSSADTVDRYKAGFASL 433
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFIT----SE 546
+FP S H+ G +D +S V P LP+ + S+
Sbjct: 434 AETLSRFPAIVR-SSHIILVPGPQDPF------------ASSLVPRPPLPQGLVEPLVSK 480
Query: 547 FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-------------D 593
+ +A+NPCR+ Y SQ+I+V R++++++M RN ++ ++ D
Sbjct: 481 LKTMHATIHLASNPCRISYFSQQIVVYRDDMMTRMLRNTVRIKDQAQEQEREQREREERD 540
Query: 594 ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIF 653
+ K V T++ Q LV L + PV W ALSLYP+P ++L D + Y + C
Sbjct: 541 LKKFLVSTVLDQAHLVPLAQRIRPVLWDHDHALSLYPMPTALVLADAYDRYELTYEGCHV 600
Query: 654 INP 656
+NP
Sbjct: 601 VNP 603
>gi|268553377|ref|XP_002634674.1| Hypothetical protein CBG19657 [Caenorhabditis briggsae]
Length = 514
Score = 165 bits (417), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 121/426 (28%), Positives = 206/426 (48%), Gaps = 35/426 (8%)
Query: 238 QIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 297
++ +V AF + +D++P+L K L L ADS + S R+R+ +++QR R +
Sbjct: 85 KLLNVFDAFSLHAYDFEPELGKMVLRKATPTLAADSSSFSHAARQRFLLVKQRAARCASL 144
Query: 298 NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ-TS 356
N K E L + T VVLG+ + + Y +ED +G ++++ + T
Sbjct: 145 KNF-------KFTTCEILSASTKTLKSVVVLGINHCFQADCYHIEDLSGSIEVEFKEDTK 197
Query: 357 YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG-NQNIWGGPSPVSLKS 415
+H L+ E+ I + EG++++ +L V+ + P E+++ +R N+N +GG ++ +
Sbjct: 198 FHHALFHEHSIAIFEGNFENSVLKVNEVAMVPVESAETTRKELSSNENWFGGEDKIAFRC 257
Query: 416 VNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYC 475
R+ E+ I+ LSDV LD+ K L + + G+ +A C +C
Sbjct: 258 SERLRSALAKQEDTSIIFLSDVFLDDMKTMRALNKLLI----GYKDQPPIAIVLCG-NFC 312
Query: 476 SQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVL 535
S+ +LL + R + + K K F+ VP G VL
Sbjct: 313 SRPRQTDTIDLLDRGFRYLAN--QLQQMKKEYEKTQ------FIFVP-----GPDDPFVL 359
Query: 536 -SPALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG 592
P LP + F+ P ++T A+NPCR+Q+ SQEI+V R +L+ KMCR+ I
Sbjct: 360 PRPHLPSLL---FKHVSPIISATFASNPCRIQFASQEIVVFRNDLIKKMCRHSINSITVE 416
Query: 593 DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAY--TIQNTD 650
IS + R+++SQ L LP ++ P+ LSL+PLPDL+I D+ + + T+
Sbjct: 417 SISSRYARSILSQAHLCPLPQHITPILADFSHCLSLHPLPDLLISADRFETFQEKVVGTE 476
Query: 651 CIFINP 656
I NP
Sbjct: 477 TIVSNP 482
Score = 46.6 bits (109), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 50/112 (44%), Gaps = 7/112 (6%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 72
+LI T +C ++ +V AF + +D++P+L K L L ADS + S
Sbjct: 66 ELIRETFRQCKSKGSQDAGKLLNVFDAFSLHAYDFEPELGKMVLRKATPTLAADSSSFSH 125
Query: 73 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGM 124
R+R+ +++QR R + N K E L + T VVLG+
Sbjct: 126 AARQRFLLVKQRAARCASLKNF-------KFTTCEILSASTKTLKSVVVLGI 170
>gi|328858846|gb|EGG07957.1| hypothetical protein MELLADRAFT_105465 [Melampsora larici-populina
98AG31]
Length = 567
Score = 164 bits (415), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 134/451 (29%), Positives = 212/451 (47%), Gaps = 38/451 (8%)
Query: 235 SEEQIFSVISAFDIPQFDYDPDLKKFKLVD---KKRKLCADSDAKSKLFRERYNIIRQRT 291
SE F VI AF IP+ + D K F+L + K + ++S R+RY++I+Q
Sbjct: 102 SESHTFKVIDAFQIPRLTWSEDRKIFELFEAGKSKPSILGQPMSRSLYLRDRYHVIKQVI 161
Query: 292 LRHSLFNNINPNADSVKLDWVEYLM------SLTNVNHKTVVLGMISQLKENRYFLEDPT 345
LR+ F+ + + EY+ L + ++ GM+S++++ Y LED
Sbjct: 162 LRNEHFSPPTVAGGAGAEEREEYMKLTSTRNMLGRAGQRFLLFGMLSRMQDYSYCLEDLD 221
Query: 346 GIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNI 404
G V+LDLS + G +TE C VL EG Y+ D+ V +G PP E R F + +
Sbjct: 222 GRVKLDLSNATPAEGFFTEGCFVLAEGEYQADESFRVLEIGHPPSEQRDVCRKQFAHIDF 281
Query: 405 WG-GPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNS 463
G G P+S ++ ++ K E ++ IV +SD +LDN V N E I ++ +S
Sbjct: 282 TGTGALPLSEEA--KLVKAESASDTQFIV-MSDFYLDNPSVLINF-ERILDGYEDQFQSS 337
Query: 464 TMATNPCRVQYC----SQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL 519
P V SQ+ + + M + +SK+ +N I +
Sbjct: 338 GGGIRPPPVWVLCGDFSQKPFIFDGNM--TMAYTALFTKLANSLSKY---SNITPYIHLV 392
Query: 520 IVPKIYVEGTVT----SKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
IVP + + T S + P + + S + N + +NPCR+++ SQE+++ RE
Sbjct: 393 IVPGPHDPWSSTTLPRSSLPLPIVKPLLASASRIPKENIHLVSNPCRIRWMSQELVICRE 452
Query: 576 ELLSKMCRNCI----KFP------EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGA 625
L+SKMCRN + K P E D++K V+T++ Q L L LN+ PV W A
Sbjct: 453 NLMSKMCRNLVSESLKDPTSAMDSEREDMAKFLVQTILDQAHLSPLALNVRPVLWEFDQA 512
Query: 626 LSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
L LYP+P ++L D Y + C NP
Sbjct: 513 LRLYPMPTTLVLADSYPPYRLTYEGCHVFNP 543
Score = 45.8 bits (107), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 53/111 (47%), Gaps = 9/111 (8%)
Query: 29 SEEQIFSVISAFDIPQFDYDPDLKKFKLVD---KKRKLCADSDAKSKLFRERYNIIRQRT 85
SE F VI AF IP+ + D K F+L + K + ++S R+RY++I+Q
Sbjct: 102 SESHTFKVIDAFQIPRLTWSEDRKIFELFEAGKSKPSILGQPMSRSLYLRDRYHVIKQVI 161
Query: 86 LRHSLFNNINPNADSVKLDWVEYLM------SLTNVNHKTVVLGMISQLKE 130
LR+ F+ + + EY+ L + ++ GM+S++++
Sbjct: 162 LRNEHFSPPTVAGGAGAEEREEYMKLTSTRNMLGRAGQRFLLFGMLSRMQD 212
>gi|255082153|ref|XP_002508295.1| predicted protein [Micromonas sp. RCC299]
gi|226523571|gb|ACO69553.1| predicted protein [Micromonas sp. RCC299]
Length = 639
Score = 164 bits (415), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 118/378 (31%), Positives = 198/378 (52%), Gaps = 47/378 (12%)
Query: 236 EEQIFSVISAFDIPQFDYDPDLKKF-KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 294
+E +++ AFD+P++ YD K F + K + + A +++K +L+RER+ +++QR RH
Sbjct: 70 DEDGITIVDAFDMPRYCYDTQRKVFHENAGKVKTINASAESKIELYRERFLLLQQRVARH 129
Query: 295 SLF--NNINPNADSVKLDWVEYLMSLTNVNHKTV----VLGMISQLKENRYFLEDPTGIV 348
+F + + + + + E L LT + +V V+G +SQL+++R+FLED TG +
Sbjct: 130 RMFVKPAFSASGAAAQRTYCE-LTPLTGLLGHSVGTKYVMGCLSQLEDDRFFLEDLTGQI 188
Query: 349 QLDLSQTSYHPGLYTENCIVLVEGHYK--DQILHVDALGFPPPEASKNSRLYFGNQNIWG 406
Q+D+S + GLYTENCIV+ EG + D +L V ALGFPP E+ +++R N +
Sbjct: 189 QVDVSHAATSSGLYTENCIVVAEGEVRKSDGVLEVRALGFPPAESREDTR-NATNFLDFV 247
Query: 407 GPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGF-----VP 461
G + K + RM + E + + M V+LSDV LD R + + + F+GF +P
Sbjct: 248 GAGRLRPKDIERMVEEEAASTSDMFVVLSDVWLD----RESTFARLRTVFEGFDSLDAIP 303
Query: 462 N--------STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGE 513
+ S+ P R + + K+ +FP
Sbjct: 304 SMFVLMGDFSSQPFGPTRFGFGDY------AKGFDKLAELVREFP------------RLR 345
Query: 514 KDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVV 573
++ ++IVP G V+S + P L +T + +P +T A+NP RV+Y SQ+++ +
Sbjct: 346 QEARWVIVPGPGDPG-VSSALPRPPLMPSLTESLREALPRATFASNPARVRYRSQDLVFM 404
Query: 574 REELLSKMCRNCIKFPEE 591
RE+L S+M RNCI P E
Sbjct: 405 REDLQSRMRRNCILPPTE 422
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 596 KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQN-TDCIFI 654
+H TLV Q L LP+ PVYW AL LYP P V+LGD+ + D +
Sbjct: 554 RHLAATLVQQAHLAPLPIAQLPVYWEHDHALRLYPAPHCVVLGDRTEQQALAKFEDTELV 613
Query: 655 NP 656
NP
Sbjct: 614 NP 615
Score = 48.9 bits (115), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 63/109 (57%), Gaps = 8/109 (7%)
Query: 30 EEQIFSVISAFDIPQFDYDPDLKKF-KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 88
+E +++ AFD+P++ YD K F + K + + A +++K +L+RER+ +++QR RH
Sbjct: 70 DEDGITIVDAFDMPRYCYDTQRKVFHENAGKVKTINASAESKIELYRERFLLLQQRVARH 129
Query: 89 SLF--NNINPNADSVKLDWVEYLMSLTNVNHKTV----VLGMISQLKEN 131
+F + + + + + E L LT + +V V+G +SQL+++
Sbjct: 130 RMFVKPAFSASGAAAQRTYCE-LTPLTGLLGHSVGTKYVMGCLSQLEDD 177
>gi|115462247|ref|NP_001054723.1| Os05g0160800 [Oryza sativa Japonica Group]
gi|51038114|gb|AAT93917.1| unknown protein [Oryza sativa Japonica Group]
gi|55168061|gb|AAV43929.1| unknown protein [Oryza sativa Japonica Group]
gi|113578274|dbj|BAF16637.1| Os05g0160800 [Oryza sativa Japonica Group]
Length = 372
Score = 164 bits (414), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/353 (31%), Positives = 174/353 (49%), Gaps = 29/353 (8%)
Query: 315 LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHY 374
+ SL + ++G+ISQL+E +++LED TG V +DLS G + EN +++ EG
Sbjct: 12 IQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLSNAKITSGFFVENTVIVAEGEL 71
Query: 375 -KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVI 433
+ I V+ GFPP E + S + +GG + + R++ +EK N M VI
Sbjct: 72 LSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGG-GVIPTEETVRLSTLEKKAMNDMFVI 130
Query: 434 LSDVHLDNDKVRNNLC------EFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 487
LSDV LDN + L + + + FV + PC + + S E L ++ L
Sbjct: 131 LSDVWLDNYETMEKLGVVLDGYDSLEAVPSLFVLMGNFCSRPCNLAFNSFEELRLQFGKL 190
Query: 488 SKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSP-ALPKFITSE 546
+M +++ ++ FL +P G SK L ALPK++T E
Sbjct: 191 GEMI---------------AARSRLKEHSRFLFIPGPDDAGP--SKALPRCALPKYLTEE 233
Query: 547 FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---EEGDISKHFVRTLV 603
Q +PN+ +NPCRV++ +QEI+ R++LL +M R+C+ P E D +H V T+
Sbjct: 234 LQKHIPNAIFVSNPCRVKFYTQEIVFFRQDLLYRMRRSCLIPPTTEETSDPFEHLVATIT 293
Query: 604 SQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
Q L LPL + P+ WS L LYP P ++LGD+ + + T NP
Sbjct: 294 HQSHLCPLPLTVQPIIWSYDHCLRLYPTPHTIVLGDKSDQKAFKYTGITCFNP 346
>gi|302693741|ref|XP_003036549.1| hypothetical protein SCHCODRAFT_47682 [Schizophyllum commune H4-8]
gi|300110246|gb|EFJ01647.1| hypothetical protein SCHCODRAFT_47682, partial [Schizophyllum
commune H4-8]
Length = 482
Score = 161 bits (407), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/444 (26%), Positives = 207/444 (46%), Gaps = 38/444 (8%)
Query: 230 RTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQ 289
R ++++ +F V+ +F++P +++ P+ F+ V+ + +++ R R NII+Q
Sbjct: 36 RQTLDADSHLF-VVDSFEMPLWNWSPERGTFEKVNTPLTVSGTPESRVLSVRNRLNIIKQ 94
Query: 290 RTLRHSLFN-NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIV 348
LR+ F + P+ D +L L + ++LGM++ KE + LED G V
Sbjct: 95 CVLRNEHFAPSTLPSKDRERL-LKSTKQLLGRAGERFLLLGMLAHNKEGKLVLEDADGSV 153
Query: 349 QLDLSQTSY-HPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWG 406
+LD + GL+ E C LVEG Y D L V A+G PP E +R +G+ + G
Sbjct: 154 ELDFTHLDEPGDGLFVEGCFALVEGEYTPDGALEVIAIGQPPCEPRDVARSIYGHIDFLG 213
Query: 407 GPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMA 466
+ L+ T+++++ EN +LSDV LD+ + +P +
Sbjct: 214 KGATSLLEDTQFATRVQEDFENMQFFVLSDVWLDHPRT---------------LPGLRLM 258
Query: 467 TNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF------LI 520
C +++V L I + DI ++ + D+I
Sbjct: 259 FENCVANDFVPKVIV----LCGNFTTQSISHGDGRDIQRYQENFDALADLIASFPDLTAA 314
Query: 521 VPKIYVEGTVTSKVLSPALPK-----FITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
++V G + + P LP+ T+ + VP+ ATNPCR+++ QEI+V RE
Sbjct: 315 THFVFVPGPLDIALNGPVLPRKPLMSAFTARLRAKVPHVHFATNPCRIKFFHQEIVVFRE 374
Query: 576 ELLSKMCRNCIKFPEE---GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
+L+++M RN + + D+ ++ V+T++ Q + LN+ PV +L LYPLP
Sbjct: 375 DLMARMLRNMVGVKPDVAGEDLKRYLVQTVLDQAHMSPFTLNIQPVLSDFDHSLRLYPLP 434
Query: 633 DLVILGDQLNAYTIQNTDCIFINP 656
V+L D+ + Y I T C NP
Sbjct: 435 TAVVLADKYDRYKITYTGCHVFNP 458
>gi|307102997|gb|EFN51262.1| hypothetical protein CHLNCDRAFT_141171 [Chlorella variabilis]
Length = 539
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 119/433 (27%), Positives = 189/433 (43%), Gaps = 51/433 (11%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
V+ AF +P YDP RKL S +K +L+ R++++ QR R+ LF
Sbjct: 91 VVDAFRVPHVVYDP----------VRKLFHRSASKVQLYVNRFHLVHQRLKRNKLFRAAK 140
Query: 302 -----PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTS 356
+ E L V + V+G ++Q +E RY +ED + + +DL++
Sbjct: 141 FAGLGGGGGQSDCELTELKAMLGVVGEQRCVMGFLTQPEEGRYAIEDLSARLPVDLTEAE 200
Query: 357 YHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKS 415
G++T+NCIV+ EG + D + V ALG PPPE S + +GG P
Sbjct: 201 QTLGMFTQNCIVVAEGELQADGVFKVAALGMPPPERRAESLQALQGLDFFGGQVP----D 256
Query: 416 VNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNS---------TMA 466
++ E + + IV+LSDV LD +V +NL + Q P S + A
Sbjct: 257 ERQLLSWEARHADDRIVLLSDVWLDRPEVLDNLHTVLAGFSQLEQPPSLFVLMGAFQSYA 316
Query: 467 TNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYV 526
N Y +RE + + R ++P SK +P+
Sbjct: 317 ANAANTHYAR-----LREH-FAALGRAINQYPAIRAASKFALVPGPGDLGPGGSLPR--- 367
Query: 527 EGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI 586
P LP + + VPN+ +A+NPCR+++ E++V R+ L +M I
Sbjct: 368 ----------PGLPVAVAAPLLEAVPNAVLASNPCRIRHGGGEVVVFRDNLQQRMRGLAI 417
Query: 587 KFPEEGD---ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA 643
P GD + +H T++ Q L +PL P+YW AL +YP+PD ++L D A
Sbjct: 418 LPPPAGDEAPLFEHVCATVLQQSHLCPVPLEYQPIYWEYDHALYVYPMPDALVLADSAAA 477
Query: 644 YTIQNTDCIFINP 656
+ C +NP
Sbjct: 478 GAFEFDSCSCLNP 490
>gi|308807238|ref|XP_003080930.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
gi|116059391|emb|CAL55098.1| DEAD-box protein abstrakt (ISS) [Ostreococcus tauri]
Length = 1025
Score = 160 bits (404), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 110/429 (25%), Positives = 202/429 (47%), Gaps = 37/429 (8%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
T+ S +V A ++ YD + F + + +++K L+R+R+ +++QR
Sbjct: 573 TDRASASDGLTVCDAHATRRYAYDAQRRTFDETRRAARAAGQAESKIDLYRDRFLLLQQR 632
Query: 291 TLRHSLFNNINPNA----DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
R F + + +L + L+ ++ K ++G++SQL++ +++ED +G
Sbjct: 633 LARSRQFARSSLKGTRREEGAELSTINSLLGVSK--EKKYIMGLLSQLEDGVFYMEDLSG 690
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIW 405
+++DL+ GL+TENC+VL G + D + V L FPP E +R + +
Sbjct: 691 TIRVDLTVCERSIGLFTENCVVLAAGEVRPDGVFEVLELTFPPSEKRAATREATSAIDFF 750
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCE-FITSEFQGFVPN-- 462
G + V + + E+ V+LSDV LD + + L + F + VP
Sbjct: 751 GAGHVIRPYEVEDLERKEQERVGEAFVVLSDVWLDQPRTFDRLAKMFELFDAPDDVPGLM 810
Query: 463 ---STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL 519
++ P +C + + E L++M ++ + +E F+
Sbjct: 811 VFMGDFSSQPFGPTHCDFQAYIEGFERLAEMLQDFPRLRQESR---------------FV 855
Query: 520 IVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLS 579
VP G +++ + PAL K + F VP + A+NP +++Y SQ+++ R++L +
Sbjct: 856 FVPGPGDPG-LSAALPRPALQKSLVGSFVEKVPRAQFASNPAKIRYFSQDLVFFRDDLQA 914
Query: 580 KMCRNCIKFPEEGDIS--------KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
KM RNC+ P++ ++ +H V TLV Q L LPL P+YW +L LYP
Sbjct: 915 KMRRNCLIPPDDDKLTDKQEWPVFQHLVATLVQQAHLCPLPLTQSPIYWEFDHSLWLYPA 974
Query: 632 PDLVILGDQ 640
P+ + LGD+
Sbjct: 975 PNFIFLGDR 983
>gi|313233828|emb|CBY09997.1| unnamed protein product [Oikopleura dioica]
Length = 305
Score = 158 bits (399), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 76/210 (36%), Positives = 132/210 (62%), Gaps = 3/210 (1%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
K +++ + E + ++ F VI AF++P+F YD + +K+ + + ++ L D+K ++FRE
Sbjct: 90 KRATQEEQREQDKKDSFFRVIDAFEVPRFIYDCEAEKY-IKETQQPLMGGIDSKVQMFRE 148
Query: 283 RYNIIRQRTLRHSLFNNINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKENRYF 340
RYN + RTLRH LF+ + A + + L +EYL T VVLGM++Q+KE ++
Sbjct: 149 RYNSVLVRTLRHRLFSAGHRKAQTAQFSLQKIEYLKGCTTKMKDIVVLGMLNQMKEGEWW 208
Query: 341 LEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG 400
+EDP+G + +D+ ++H GL+TE+ ++LVEG Y + +++ A GFPPPE++ SR Y
Sbjct: 209 IEDPSGAIIIDMKDATFHKGLFTESSMILVEGTYDNGVIYATAFGFPPPESAAVSRSYHS 268
Query: 401 NQNIWGGPSPVSLKSVNRMTKMEKNNENAM 430
N +GG ++ S RM +E++ EN++
Sbjct: 269 TTNFFGGERGTNIGSSERMQVLERDCENSV 298
Score = 75.1 bits (183), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/108 (37%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 26 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 85
E + ++ F VI AF++P+F YD + +K+ + + ++ L D+K ++FRERYN + RT
Sbjct: 99 EQDKKDSFFRVIDAFEVPRFIYDCEAEKY-IKETQQPLMGGIDSKVQMFRERYNSVLVRT 157
Query: 86 LRHSLFNNINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
LRH LF+ + A + + L +EYL T VVLGM++Q+KE
Sbjct: 158 LRHRLFSAGHRKAQTAQFSLQKIEYLKGCTTKMKDIVVLGMLNQMKEG 205
>gi|384250215|gb|EIE23695.1| DNA polymerase epsilon, subunit B [Coccomyxa subellipsoidea C-169]
Length = 557
Score = 157 bits (396), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 138/482 (28%), Positives = 208/482 (43%), Gaps = 80/482 (16%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VISAFD P+ YDP K F + + L S+ K +++ +R ++ QR R+ F+
Sbjct: 82 VISAFDTPKLRYDPIRKVFYQIQGRPTLHGSSEEKVQMYLDRMYLLLQRLKRNRNFSR-- 139
Query: 302 PNADSVKLDWVEYL------MSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQT 355
P +K D +++ L V V+G ISQL + RYFLED + + +DLS
Sbjct: 140 PAFAGIKADSRDFVELTELKALLGCVGQVKFVMGCISQLTDGRYFLEDMSDSLPIDLSDA 199
Query: 356 SYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLK 414
G +TENCIV+ EG + + V ALGFPP E SRL N + +GG +P S
Sbjct: 200 QTTSGFFTENCIVVAEGVLQHSGVFKVRALGFPPVELRSESRLAAKNLDFFGGSTP-SED 258
Query: 415 SVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGF--VPN--------ST 464
+E IV+LSD+ LD + L + F+G VP+ +
Sbjct: 259 EQLAAAAALAEDEADRIVVLSDLWLDKPATLDRL-RVVLEGFEGLERVPSMFVLLGNFQS 317
Query: 465 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKI 524
+ N Y ++ + FP + E ++F VP +
Sbjct: 318 FSCNAASTDY------AALKDNFGALAGTLASFP----------RIRAESRLVF--VPGL 359
Query: 525 YVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRV----QYC-------------- 566
G + + P LP+ + + +P + +NPCR+ Q C
Sbjct: 360 GDAGP-GAILPRPPLPESLIGALREQLPTALFTSNPCRIRHFNQACPNNPLLSLLCHSTT 418
Query: 567 ---SQEILVVREELLSKMCRNCIKFP-EEGDIS--------KHFVRTLVSQGTLVSLPLN 614
S EI+V R+ L ++M + C+ P +EG + +H TL+ Q L +PL
Sbjct: 419 TNLSTEIVVFRDNLQNRMRKLCLLAPNDEGTGAEASSDAAFEHLCATLLQQSHLCPVPLE 478
Query: 615 LCPVYWSQYGALSLYPLPDLVILGDQLNAYTI---------QNTDCIFINP-VFHNTVRN 664
PVYWS ALSLYPLPD +IL D + + C+ +NP F N
Sbjct: 479 AQPVYWSYDHALSLYPLPDALILADPAPCASFAFPPLPPDQRGAACVCLNPGSFANGTFA 538
Query: 665 AF 666
A+
Sbjct: 539 AY 540
Score = 45.8 bits (107), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 49/102 (48%), Gaps = 8/102 (7%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VISAFD P+ YDP K F + + L S+ K +++ +R ++ QR R+ F+
Sbjct: 82 VISAFDTPKLRYDPIRKVFYQIQGRPTLHGSSEEKVQMYLDRMYLLLQRLKRNRNFS--R 139
Query: 96 PNADSVKLDWVEYL------MSLTNVNHKTVVLGMISQLKEN 131
P +K D +++ L V V+G ISQL +
Sbjct: 140 PAFAGIKADSRDFVELTELKALLGCVGQVKFVMGCISQLTDG 181
>gi|302796817|ref|XP_002980170.1| hypothetical protein SELMODRAFT_111965 [Selaginella moellendorffii]
gi|300152397|gb|EFJ19040.1| hypothetical protein SELMODRAFT_111965 [Selaginella moellendorffii]
Length = 484
Score = 154 bits (388), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 116/418 (27%), Positives = 189/418 (45%), Gaps = 72/418 (17%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
+SE+ V+ AF +P+F YDP K F +K + D+ +KS L+++R ++ QR +R
Sbjct: 88 SSEQNALLVVDAFKLPRFCYDPIRKMFYRYNKTPSVHGDARSKSALYKDRLQLLHQRLIR 147
Query: 294 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLS 353
F + D + +G ++
Sbjct: 148 DRHFAKPAFDMDGSR------------------------------------SGTCEI--- 168
Query: 354 QTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVS 412
TS G TENCI++ EG + + I + GFPP E S + +G + +S
Sbjct: 169 -TS---GFLTENCIIVAEGLLQANGIFQISTCGFPPLEGRNISLSVTAGLDFFGAGA-LS 223
Query: 413 LKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-------FVPNSTM 465
++R+ +E+ N M V++SDV LD+++ NL E + F+ F+
Sbjct: 224 YDEISRLEVLERKAVNDMFVVISDVWLDDEQTMRNL-EVVLDGFENVDVVPSVFILMGNF 282
Query: 466 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIY 525
+ PC + + S L + L + I+ H ++ K F+++P
Sbjct: 283 LSRPCNLSFHSFGELRSHFDKLGTL------------IASHTRISSTSK---FVLIPGPE 327
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNC 585
G +S + PALP + T E VPN T A+NPCR+++ SQEI++ RE LL +M R C
Sbjct: 328 DPGP-SSVLPRPALPSYFTKELAKHVPNVTFASNPCRIRFFSQEIVLFRENLLYRMRRLC 386
Query: 586 IKFPEEGDIS---KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ 640
I P + + + +H V T+ Q L LPL P+ W A+ LYP P ++LGD+
Sbjct: 387 IVTPSDEETTEPFEHLVATITHQSHLCPLPLTSQPIVWEYDHAMRLYPTPHTIVLGDR 444
Score = 47.0 bits (110), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 27/98 (27%), Positives = 46/98 (46%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
+SE+ V+ AF +P+F YDP K F +K + D+ +KS L+++R ++ QR +R
Sbjct: 88 SSEQNALLVVDAFKLPRFCYDPIRKMFYRYNKTPSVHGDARSKSALYKDRLQLLHQRLIR 147
Query: 88 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMI 125
F + D + E N V G++
Sbjct: 148 DRHFAKPAFDMDGSRSGTCEITSGFLTENCIIVAEGLL 185
>gi|343429581|emb|CBQ73154.1| related to DNA polymerase epsilon subunit B [Sporisorium reilianum
SRZ2]
Length = 633
Score = 153 bits (386), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 129/484 (26%), Positives = 201/484 (41%), Gaps = 79/484 (16%)
Query: 232 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 291
E+ + F V SAF P+ +DP K F+ + + +S R+RY+I++
Sbjct: 141 ELPDPHRYFGVHSAFTQPKLAFDPIRKVFEPATLSPTVLPTAATRSTFPRQRYHILKSVI 200
Query: 292 LRHS-----LFNNINPNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKENRY 339
R+ L + S K + + M LT+ + ++ GM+S + RY
Sbjct: 201 SRNENFCPPLAIGTASGSRSGKNELADGFMKLTSTKNLLGRQGQRFLLFGMLSTSSDGRY 260
Query: 340 FLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLY 398
LED G V LDL+ G++TE ++LVEG Y ++ + V A+G PP E +R
Sbjct: 261 ELEDADGTVGLDLADAIPGEGIFTEGSLILVEGEYTVEERMRVFAIGHPPSETRAQARSI 320
Query: 399 FGNQNIWGGPSP--------------------VSLKSVNRMTKMEKNNENAMIVILSDVH 438
+ + G P P +S+K E + VI SD+H
Sbjct: 321 HAHTDFLGAPQPPALSSASARAAAASSSWRGAMSVKEEAAFAVHEARLSDLCFVIFSDLH 380
Query: 439 LDNDKVRNNLCEFITSEFQGFVPNS------TMATNPCRVQYCSQEILVVREELLSKMCR 492
LD+ K L F T QG+V + N QY S + + + +
Sbjct: 381 LDHAK---TLSAFATV-LQGYVDADFLPFALVLCGNFASEQYTSADTVQRYRAGFAMLGE 436
Query: 493 NCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITS------- 545
FP S HV G +D TS V PALP+ +
Sbjct: 437 TLAAFPSIVR-SSHVILVPGPQDAF------------ATSLVPRPALPEVLVQPLLQKLK 483
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE-------------G 592
QG V +A+NPCR+ Y SQ+++V R++ +++ RN ++ +E
Sbjct: 484 ALQGTV---HLASNPCRLSYFSQQLVVYRDDTMTRFLRNTVRIKDETHEQRRDERERDER 540
Query: 593 DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCI 652
D+ K V T++ Q LV L + PV W ALSLYP+P ++L D + Y + C
Sbjct: 541 DLKKFLVSTVLDQAHLVPLAQRIRPVLWDHDHALSLYPMPTALVLADAYDRYELTYEGCH 600
Query: 653 FINP 656
+NP
Sbjct: 601 VVNP 604
>gi|392568837|gb|EIW62011.1| epsilon DNA polymerase [Trametes versicolor FP-101664 SS1]
Length = 542
Score = 152 bits (385), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 120/425 (28%), Positives = 205/425 (48%), Gaps = 22/425 (5%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN-NI 300
VI AF++P +++ + F+ +D++ R R N+I+Q LR+ F+ +
Sbjct: 96 VIDAFEMPSWNWSSERSTFERASGPLTSSGTADSRVTAMRNRLNVIKQCVLRNDHFSPST 155
Query: 301 NPNADSVKLDWVEYLMSL-TNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSY-H 358
P+ D L + L + ++ GM++ KE + LEDP G+V+LD +Q
Sbjct: 156 LPSKDRENLLTLRSTKQLLGRAGDRFLLFGMLTHSKEGKLCLEDPDGLVELDFTQLEQPS 215
Query: 359 PGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVN 417
GL+TE C+ LVEG Y +D L V A+G PP E+ + +R FG+ + G + L+
Sbjct: 216 EGLFTEGCLALVEGDYTEDGTLLVIAIGHPPCESREAARSIFGHVDFLGKGATTLLEDKQ 275
Query: 418 RMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQ 477
T+++ + +LSDV LD + L + F + NS + P + C
Sbjct: 276 LSTRVQLELADLRFFVLSDVWLDRPETLLGLRKL----FDNCMENSFI---PKVIILCGN 328
Query: 478 EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG--EKDIIFLIVPKIYVEGTVTSKV- 534
V + R ++ E D V + + F++VP ++ T+ S +
Sbjct: 329 FTSV---GIPQGNGREVRRYQEHFDALADVIASYPLITRSTHFVMVPGP-LDVTMNSILP 384
Query: 535 LSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE--- 591
P L F+ S + +PN ATNPCR+++ QEI+V RE+L+S+M RN + +
Sbjct: 385 RRPLLSSFV-SRMKSRIPNVHFATNPCRIKFFEQEIVVFREDLMSRMLRNLVGVKPDVKN 443
Query: 592 GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDC 651
D+ ++ V+T++ Q L+ + +++ P L LYPLP V+L D+ + Y + C
Sbjct: 444 DDLKRYLVQTVLDQSHLMPVTVSIEPTLAEYDHTLRLYPLPTAVVLADRYDRYQMTYEGC 503
Query: 652 IFINP 656
NP
Sbjct: 504 HVFNP 508
>gi|402226043|gb|EJU06103.1| DNA polymerase epsilon subunit B [Dacryopinax sp. DJM-731 SS1]
Length = 547
Score = 148 bits (374), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 109/426 (25%), Positives = 199/426 (46%), Gaps = 29/426 (6%)
Query: 243 ISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN-NIN 301
+ AFD+P++ Y + F+ + +++ R+RY++I+Q LR+ F +
Sbjct: 107 VDAFDMPRWMYSVERHTFEKSSTPPNIAGSPASRTAFLRDRYHVIKQVVLRNEHFTPAVV 166
Query: 302 PN---ADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYH 358
P D+ KL + L+ ++LGM++ + + LED G V LD+SQ +
Sbjct: 167 PGLSQGDTNKLTSTKNLLGC--AGETFMLLGMLAHEPDGKLCLEDVDGKVLLDMSQAASC 224
Query: 359 PGLYTENCIVLVEGHYKDQ-ILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVN 417
GL TE C VLVEG Y D+ L V +G PP E SR FG+ + G + +
Sbjct: 225 QGLITEGCFVLVEGEYTDEDTLKVWQIGHPPSERRGASRSIFGHIDFLGKGATTPAEDEE 284
Query: 418 RMTKMEKNNENAMIVILSDVHLDNDK----VRNNLCEFITSEFQGFVPNSTMATNPCRVQ 473
+++ + + V++SD+ LD+ K +R+ L + + F F+
Sbjct: 285 YARRIQ-DFPHVSFVVISDLWLDHPKTLIGLRSVLDRCVETGFTPFL-----------FV 332
Query: 474 YCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSK 533
+C + + + F GD+ + + +F+ P ++ ++
Sbjct: 333 FCGSFTSRGIGSGGAGIEQYTDNFSALGDLLASYREISAVSHFLFVPGP---LDPWGSTT 389
Query: 534 VLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE-- 591
+ PA+P+ + + +P + +NPCRV++ QEI++ RE+L++++ RN + +E
Sbjct: 390 LPRPAIPEPFVARLKARLPRAVFLSNPCRVKFFGQEIVIFREDLMARVLRNLVGVKQEIE 449
Query: 592 -GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTD 650
++ ++ V+ ++ Q L LPL + P+ W AL LYP P +IL D+ Y
Sbjct: 450 ATELKRNLVQMVIDQEHLSPLPLTVQPILWEFDHALRLYPSPTALILADKYERYEETYEG 509
Query: 651 CIFINP 656
C NP
Sbjct: 510 CHVFNP 515
>gi|164660840|ref|XP_001731543.1| hypothetical protein MGL_1726 [Malassezia globosa CBS 7966]
gi|159105443|gb|EDP44329.1| hypothetical protein MGL_1726 [Malassezia globosa CBS 7966]
Length = 525
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/421 (28%), Positives = 184/421 (43%), Gaps = 45/421 (10%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
FSV AF P + + F+ V ++ L + + A S ERY ++R LR+ F
Sbjct: 122 FSVCDAFHQPYIRFHAPRQVFEKVGRRGSLLSGAQAPSAHMEERYQLLRSIVLRNEHFLP 181
Query: 300 INPNADSVKLDWVEYLMSLTNVNH-------KTVVLGMISQLKENRYFLEDPTGIVQLDL 352
S + +M LT H ++ G +S + Y LED G V LDL
Sbjct: 182 ALTGPTSSR----SSMMQLTTTKHLLGRQGEHCLLFGRLSTSADGTYILEDTEGYVPLDL 237
Query: 353 SQTSYHPGLYTENCIVLVEGHYKD-QILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
Q G++TE VL+EG Y + + L V A+G PP E +++R G+ + W G V
Sbjct: 238 QQAVAGEGIFTEGAYVLIEGEYTNSEQLRVWAMGHPPSERREDARQIAGHLD-WYGTGAV 296
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS-EFQGFVPNSTM----- 465
K V+ + E + + + +LSDVHLD+ +L + + FVP + +
Sbjct: 297 PTKHVSALRAQELQHPDVCVTVLSDVHLDDPVTLAHLRAILQGYQDADFVPLAIVLCGHF 356
Query: 466 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIY 525
++ P V + L M R FP + S H G +D
Sbjct: 357 SSTPVEVDGALETYAASFARLADIMTR----FPRLLE-SCHWVFVPGARD---------- 401
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT------NPCRVQYCSQEILVVREELLS 579
T + P +P + F+ +P T NPCR+ Y SQ+I++ R+ ++S
Sbjct: 402 --PAATPLLPRPRIPAPLVERFERRLPRDFCETRLHWMSNPCRLVYFSQDIVIFRDNIMS 459
Query: 580 KMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI 636
KM R+ + E GD+ K+ V TL+ Q L LP + P+ W AL LYP+P V
Sbjct: 460 KMLRSAMLLKDHLEAGDLQKYLVSTLLDQAHLCPLPPQVRPILWEYAHALRLYPMPSAVR 519
Query: 637 L 637
L
Sbjct: 520 L 520
>gi|392592784|gb|EIW82110.1| DNA polymerase epsilon, subunit B [Coniophora puteana RWD-64-598
SS2]
Length = 530
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 120/440 (27%), Positives = 202/440 (45%), Gaps = 23/440 (5%)
Query: 226 SECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYN 285
++ E+ E +I AF++P +++ + F+ + +D + R R +
Sbjct: 82 ADALDAELLDPESHLHIIDAFEMPLWNWSQERGTFEKFSGPLTIAGSADTRVMATRNRLH 141
Query: 286 IIRQRTLRHSLFN-NINPNADSVKLDWVEYLMSLTN-VNHKTVVLGMISQLKENRYFLED 343
II+Q LR+ F+ + P+ D +L ++ L + ++LG++ KE + +ED
Sbjct: 142 IIKQSVLRNEHFSPSTLPSRDRERLVTLKSTKQLLGRAGDRFLLLGLLVHNKEGKLCIED 201
Query: 344 PTGIVQLDLSQTSY-HPGLYTENCIVLVEGHYKDQ-ILHVDALGFPPPEASKNSRLYFGN 401
G V+LDLS+ GLYTE C+ LVEG Y D+ L V A+G PP E + +R +G+
Sbjct: 202 SDGSVELDLSKLGEPGEGLYTEGCLALVEGEYTDENTLEVVAIGQPPCEDRETARSIYGH 261
Query: 402 QNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVP 461
+ G S L+ N ++ ++ + LSDV LD+ + L + F V
Sbjct: 262 IDFLGKGSTSLLEDSNFTRRIREDLSDLYFFFLSDVWLDDPRTFVGLQKM----FDNCVA 317
Query: 462 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHV--SKNNGEKDIIFL 519
NS + P + C L R+ ++ E D + S + F+
Sbjct: 318 NSFI---PKVIALCGN---FTSRSLAQGNARDIQRYQENFDTLADLIASYPQVTRTTHFI 371
Query: 520 IVP---KIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
VP I GT+ + P L F TS+ + +P ATNPCR+++ QEI++ RE
Sbjct: 372 FVPGPLDITSSGTLPRR---PLLSTF-TSQLKSKIPRVHFATNPCRIKFFGQEIVIFREN 427
Query: 577 LLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI 636
+++M RN + + +++ Q LV L ++ P +L LYPLP +VI
Sbjct: 428 TMARMLRNTVGVKPHVTGEELRRYSILDQSHLVPLTSSILPTLPDYDHSLRLYPLPTVVI 487
Query: 637 LGDQLNAYTIQNTDCIFINP 656
L D+ Y + + C NP
Sbjct: 488 LADKYEKYKLTYSGCHVFNP 507
>gi|426198467|gb|EKV48393.1| hypothetical protein AGABI2DRAFT_150224 [Agaricus bisporus var.
bisporus H97]
Length = 532
Score = 148 bits (373), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 124/443 (27%), Positives = 211/443 (47%), Gaps = 29/443 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
E + +N E +F I A+++P++ + + F+ + A +++ R+R +I
Sbjct: 83 EIHKDGLNPENHLF-FIDAYEMPKWHWSNERGSFERSSTSLSVSASPESRILAIRDRLDI 141
Query: 287 IRQRTLRHSLFN-NINPNADSVKLDWVEYLMSLTNV-NHKTVVLGMISQLKENRYFLEDP 344
IRQ LR+ F + P+ D KL ++ L + ++LGM++ KE + LED
Sbjct: 142 IRQCILRNEHFAPSTIPSRDREKLVTLKSTKQLLGRPGQRFLLLGMLTHNKEGKMCLEDA 201
Query: 345 TGIVQLDLSQTSYHPG--LYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGN 401
G V LD S T PG LYTE C LVEG Y +D L + A+G PP E +R +G+
Sbjct: 202 DGTVVLDYS-TLDEPGEGLYTEGCFALVEGEYTEDATLKIIAIGQPPSEPRATARSIYGH 260
Query: 402 QNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-FV 460
+ G S L+ + ++ + + LSDV LD NL + + F+
Sbjct: 261 IDFLGKGSTSILEDAHLALRVREELHDMHFFFLSDVWLDVPDTLKNLRRMFDNCIENDFI 320
Query: 461 PNSTMATNPCRVQYCSQ---EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII 517
P + + + SQ + ++ + ++P I+++
Sbjct: 321 PKAIVLCGDFSSKSISQGSGRDIQRYQDGFDALADLVAQYPS---ITRYTH--------- 368
Query: 518 FLIVPKIYVEGTVTSKV-LSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
FL VP ++ T+ S + P + F+T + + +P ATNPCR+++ QEI++ RE+
Sbjct: 369 FLFVPGP-LDLTLNSILPRRPIMSSFLT-KLKNKIPKIHFATNPCRIKFFDQEIVIFRED 426
Query: 577 LLSKMCRNCIKFPEE---GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
++SKM RN I E D+ ++ V+T++ Q L L LN+ P+ +L LYPLP
Sbjct: 427 MMSKMLRNMIGTKAEISSEDLKRYLVQTILDQMHLCPLALNIQPILADYDHSLRLYPLPT 486
Query: 634 LVILGDQLNAYTIQNTDCIFINP 656
++L D+ + Y + C NP
Sbjct: 487 ALVLADKYDRYKLTYMGCHVFNP 509
>gi|403416464|emb|CCM03164.1| predicted protein [Fibroporia radiculosa]
Length = 541
Score = 147 bits (372), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 122/452 (26%), Positives = 204/452 (45%), Gaps = 36/452 (7%)
Query: 226 SECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDK----KRK-----LCADSDAK 276
SE ++ E Q+ I AFD+P + + + F+ D +R + +D++
Sbjct: 82 SEGAPDMLDPESQL-HFIDAFDMPLWHWSHERSAFERQDHTFPWRRASGSLTIAGTADSR 140
Query: 277 SKLFRERYNIIRQRTLRHSLFN-NINPNADSVKLDWVEYLMSLTN-VNHKTVVLGMISQL 334
R R NIIRQ LR+ F+ + P+ D L + L + ++ GM+
Sbjct: 141 VMAMRNRLNIIRQTVLRNDHFSPSTLPSRDRENLLTLRSTKQLLGRAGERFLLFGMLCHN 200
Query: 335 KENRYFLEDPTGIVQLDLSQTSY-HPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEAS 392
KE + LED G V+LD SQ GL+TE C LVEG Y +D IL V A+G PP E+
Sbjct: 201 KEGKLCLEDQDGSVELDFSQLDQPSEGLFTEGCFALVEGEYTEDAILVVIAVGHPPCESR 260
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI 452
+ +R +G+ + G + L+ + ++ + +LSDV LD+ + L +
Sbjct: 261 ETARSIYGHVDFLGQGATTLLEDTHLAARVRLELPDLRFFVLSDVWLDHPETLRGLRKMF 320
Query: 453 TSEFQ-GFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE----GDISKHV 507
+ F+P + + SQ R +F ++ D+
Sbjct: 321 DHCMENSFIPKVIVLCGNFSSRGISQ-----------GNSREVRRFQDQLDSLADLIAAY 369
Query: 508 SKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS 567
I+F+ P ++ TV S + L S + VP ATNPCR+++
Sbjct: 370 PLITRTTHIVFVPGP---LDVTVNSVLPRRPLMSSFVSRLKSRVPKVHFATNPCRIKFFE 426
Query: 568 QEILVVREELLSKMCRNCIKFPEEG---DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYG 624
QEI++ RE++++KM RN + + D+ ++ V++++ Q LV L ++ P+
Sbjct: 427 QEIVIFREDMMAKMLRNLVGVKPDAKNDDLKRYLVQSILDQSHLVPLTTSIQPILSDFDH 486
Query: 625 ALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
L LYPLP V+L D+ + Y + C NP
Sbjct: 487 TLRLYPLPSAVVLADKYDRYQMTYEGCHVFNP 518
>gi|13374870|emb|CAC34504.1| DNA polymerase epsilon subunit B-like protein [Arabidopsis
thaliana]
Length = 487
Score = 146 bits (369), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/437 (27%), Positives = 197/437 (45%), Gaps = 73/437 (16%)
Query: 217 NIMNWLK-LSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDA 275
N+ + LK L + E + ++I AF +P+ ++D L+ + + ++ A
Sbjct: 71 NLTSILKSLGAHNAPEEPTTSASSLAIIDAFLVPKDEFDRWLRVYVWHTSSLPIHGEASA 130
Query: 276 KSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLK 335
K+ L+RER+ ++ QR R F+ +A+ +SQ +
Sbjct: 131 KTALYRERFMLLSQRVSRAEHFSRPAFDAE-------------------------MSQFE 165
Query: 336 ENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKN 394
N Y + G +TEN I+L EG + + I V GFPP E
Sbjct: 166 NNEYKITT----------------GFFTENTIILAEGEMQVNGIFQVITCGFPPLEDRDK 209
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
+ + +GG + ++ + + ++ +E+ N VILSD+ LD+++V L E +
Sbjct: 210 TLKAHSEYDFFGGGT-LTKEEMIKLADLERQAVNDTFVILSDIWLDDEEVMRKL-ETVLD 267
Query: 455 EFQG-------FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHV 507
F+ FV + PC + + S L E K+ R P + S+
Sbjct: 268 GFESVETVPSLFVFMGNFCSRPCNLSFGSYSSL---REQFGKLGRMIGNHPRLKENSR-- 322
Query: 508 SKNNGEKDIIFLIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCRVQYC 566
FL +P E S VL ALPK++T E + +PN+ ++NPCRV++
Sbjct: 323 ----------FLFIPG--PEDAGPSTVLPRCALPKYLTEELRNIIPNAIFSSNPCRVKFY 370
Query: 567 SQEILVVREELLSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQY 623
+QEI+ R++LL +M R+C+ P E D KH V T+ Q L LPL + P+ W+
Sbjct: 371 NQEIVFFRQDLLYRMRRSCLVTPSSEETNDPFKHLVYTITHQSHLCPLPLMVQPIIWNYD 430
Query: 624 GALSLYPLPDLVILGDQ 640
AL LYP P ++LGD+
Sbjct: 431 HALRLYPTPHTIVLGDK 447
>gi|325181186|emb|CCA15600.1| DNA polymerase epsilon subunit putative [Albugo laibachii Nc14]
gi|325181885|emb|CCA16340.1| DNA polymerase epsilon subunit putative [Albugo laibachii Nc14]
Length = 538
Score = 146 bits (368), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 122/456 (26%), Positives = 212/456 (46%), Gaps = 67/456 (14%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNI 300
+ +AFD PQ + ++L D ++L + + ++ R R+ + R R+ +F+
Sbjct: 84 LFNAFDSPQLCLNEPTHTYELRDGSSQRLHGTAQDRLQVLRNRFLSVEWRVKRNPIFSK- 142
Query: 301 NPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYH 358
P+ +++E + SL +N V+GM+ Q R +LED T + LDL++ +Y
Sbjct: 143 PPSVLGTTTEYIELSNIDSLLGINGIKRVIGMLGQDDRKRTYLEDLTSRIYLDLTEATYT 202
Query: 359 PGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLK---- 414
GL+T NC VLVEG + ILHV ++GFPPPE S N+ G P+ +K
Sbjct: 203 EGLFTTNCTVLVEGEVINDILHVHSMGFPPPETKAES------MNVLNGIDPLGVKISDQ 256
Query: 415 SVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN-----STMATNP 469
+ +M ++EK +A ++LSDVH D+ V +L + + F+ +P ++
Sbjct: 257 QLEQMQQLEKTGHHATFIVLSDVHFDDPSVMKHL-DMLFQAFEDLLPTLFVLMGNFTSSK 315
Query: 470 CRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGT 529
S+ L +E + +K+P+ + S+ F++VP
Sbjct: 316 ALGCGLSRGRLQNFKECFDDLADLILKYPKLAEFSQ------------FILVPG------ 357
Query: 530 VTSKVLSPALPKF-----ITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR- 583
S +LP+ + + VPN ATNPCRV+Y +Q+I++ R++L M R
Sbjct: 358 PDDPCASHSLPRHPLMQSVVRDLCKRVPNVVCATNPCRVRYYTQDIVIFRQDLHRIMNRH 417
Query: 584 ---------------NCI--------KFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYW 620
+C+ + ++S H ++T++ QG L L L L P++W
Sbjct: 418 TLVPIVKPVTNVEAEDCVGDDTNPIEDEKQTKNLSHHILKTIIDQGHLNPLSLLLSPIHW 477
Query: 621 SQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+ L L+PLPD++I+GD Y + +P
Sbjct: 478 AYDSFLQLFPLPDVLIIGDCSERYQLGYASVAVFHP 513
>gi|409079772|gb|EKM80133.1| hypothetical protein AGABI1DRAFT_99739 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 532
Score = 145 bits (367), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 124/443 (27%), Positives = 210/443 (47%), Gaps = 29/443 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
E + +N E +F I A+++P++ + + F+ + A +++ R+R +I
Sbjct: 83 EIHKDGLNPENHLF-FIDAYEMPKWHWSNERGSFERSSTSLSVSASPESRILAIRDRLDI 141
Query: 287 IRQRTLRHSLFN-NINPNADSVKLDWVEYLMSLTNV-NHKTVVLGMISQLKENRYFLEDP 344
IRQ LR+ F + P+ D KL ++ L + ++LGM++ KE + LED
Sbjct: 142 IRQCILRNEHFAPSTIPSRDREKLVTLKSTKQLLGRPGQRFLLLGMLTHNKEGKMCLEDA 201
Query: 345 TGIVQLDLSQTSYHPG--LYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGN 401
G V LD S T PG LYTE C LVEG Y +D L + A+G PP E +R +G+
Sbjct: 202 DGSVVLDYS-TLDEPGEGLYTEGCFALVEGEYTEDATLKIIAIGQPPSEPRATARSIYGH 260
Query: 402 QNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-FV 460
+ G S L+ + ++ + + LSDV LD NL + + F+
Sbjct: 261 IDFLGKGSTSILEDAHLALRVREELHDMHFFFLSDVWLDVPDTLKNLRRMFDNCIENDFI 320
Query: 461 PNSTMATNPCRVQYCSQ---EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII 517
P + + SQ + ++ + ++P I+++
Sbjct: 321 PKVIVLCGDFSSKSISQGSGRDIQRYQDGFDTLADLVAQYPS---ITRYTH--------- 368
Query: 518 FLIVPKIYVEGTVTSKV-LSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
FL VP ++ T+ S + P + F+T + + +P ATNPCR+++ QEI++ RE+
Sbjct: 369 FLFVPGP-LDLTLNSILPRRPIMSSFLT-KLKNKIPKIHFATNPCRIKFFDQEIVIFRED 426
Query: 577 LLSKMCRNCIKFPEE---GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
++SKM RN I E D+ ++ V+T++ Q L L LN+ P+ +L LYPLP
Sbjct: 427 MMSKMLRNMIGTKAEISSEDLKRYLVQTILDQMHLCPLALNIQPILADYDHSLRLYPLPT 486
Query: 634 LVILGDQLNAYTIQNTDCIFINP 656
++L D+ + Y + C NP
Sbjct: 487 ALVLADKYDRYKLTYMGCHVFNP 509
>gi|119586158|gb|EAW65754.1| polymerase (DNA directed), epsilon 2 (p59 subunit) [Homo sapiens]
Length = 241
Score = 145 bits (366), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 128/232 (55%), Gaps = 24/232 (10%)
Query: 430 MIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNST----MATNPCRVQYCSQEILVVREE 485
M V LSDV LD +V L F G+ P + N Y ++ +++
Sbjct: 1 MFVFLSDVWLDQVEVLEKL----RIMFAGYSPAPPTCFILCGNFSSAPYGKNQVQALKDS 56
Query: 486 LLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITS 545
L + C E DI H S+ F+ VP G S + P L + IT+
Sbjct: 57 LKTLADIIC----EYPDI--HQSR--------FVFVPGPEDPG-FGSILPRPPLAESITN 101
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVS 604
EF+ VP S TNPCR+QYC+QEI V RE+L++KMCRNC++FP I HFV+T++S
Sbjct: 102 EFRQRVPFSVFTTNPCRIQYCTQEITVFREDLVNKMCRNCVRFPSSNLAIPNHFVKTILS 161
Query: 605 QGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
QG L LPL +CPVYW+ AL +YP+PDL+++ D+ + +T NT+C+ INP
Sbjct: 162 QGHLTPLPLYVCPVYWAYDYALRVYPVPDLLVIADKYDPFTTTNTECLCINP 213
>gi|443894338|dbj|GAC71686.1| DNA polymerase epsilon, subunit B [Pseudozyma antarctica T-34]
Length = 659
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 122/455 (26%), Positives = 191/455 (41%), Gaps = 58/455 (12%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
E E+ + F V SA P+ +DP K F+ + + A+S R+R++I
Sbjct: 140 ELTDGELPDPHRYFGVHSALSQPKLAFDPIRKVFEPASGPSTVLPMASARSAFPRQRFHI 199
Query: 287 IRQRTLRHSLFNN--INPNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKEN 337
++ LR+ F P A S + M LT+ + ++ GM+S +
Sbjct: 200 LKSVVLRNENFCPPLAIPAAGSSAKAEADSFMKLTSTKNLLGRQGQRFLLFGMLSTSSDG 259
Query: 338 RYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSR 396
RY LED G V LDL G++TE +LVEG Y ++ + V A+G PP E K +R
Sbjct: 260 RYELEDADGCVGLDLEHAIAGEGIFTEGSFILVEGEYTVEERIRVFAIGHPPSETRKQAR 319
Query: 397 LYFGNQNIWGGPSP--------------------VSLKSVNRMTKMEKNNENAMIVILSD 436
+ + G P P +S+K E N+ + I SD
Sbjct: 320 AMHAHTDFLGAPQPPIVAPASAASRSAAVSWRGAISVKDEAAFAVHEANHSDLCFAIFSD 379
Query: 437 VHLDNDKVRNNLCE----FITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR 492
V+LD+ K L ++ +EF F + N Q S +++ + + +
Sbjct: 380 VYLDHAKTLVALAAVLQGYVDAEFIPFA--LVLCGNFASHQVSSDDLVERYQAGFAALAD 437
Query: 493 NCIKFPEEGDISKHVSKNNGEKDIIFL-IVPKIYVEGTVTSKVLSPALPKFITSEFQGFV 551
I FP S H+ G +D +VP+ + + +L+ P T
Sbjct: 438 TLISFPAVLRKS-HIVLVPGPQDPFHTSLVPRPPLPQLLVQPLLTRLAPLGATVH----- 491
Query: 552 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP-----------EEGDISKHFVR 600
+A+NPCR+ Y SQ I+V R++ +++ RN +K EE D+ K V
Sbjct: 492 ----LASNPCRISYFSQHIVVYRDDTMTRFLRNTVKIKDDELDTDQREREERDLKKFLVS 547
Query: 601 TLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
T++ Q LV L PV W ALSLYP+P V
Sbjct: 548 TVLDQAHLVPLAQRTRPVMWDHDHALSLYPMPTAV 582
>gi|380804695|gb|AFE74223.1| DNA polymerase epsilon subunit 2 isoform 2, partial [Macaca
mulatta]
Length = 207
Score = 145 bits (365), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 70/140 (50%), Positives = 98/140 (70%), Gaps = 2/140 (1%)
Query: 518 FLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREEL 577
F+ VP G S + P L + IT+EF+ VP S TNPCR+QYC+QEI+V RE+L
Sbjct: 48 FVFVPGPEDPG-FGSILPRPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIVFREDL 106
Query: 578 LSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI 636
++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+PDL++
Sbjct: 107 VNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDLLV 166
Query: 637 LGDQLNAYTIQNTDCIFINP 656
+ D+ + +TI NT+C+ INP
Sbjct: 167 IADKYDPFTITNTECLCINP 186
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 1/67 (1%)
Query: 445 RNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DI 503
R L E IT+EF+ VP S TNPCR+QYC+QEI+V RE+L++KMCRNC++FP I
Sbjct: 65 RPPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIVFREDLVNKMCRNCVRFPSSNLAI 124
Query: 504 SKHVSKN 510
H K
Sbjct: 125 PNHFVKT 131
>gi|390601039|gb|EIN10433.1| DNA polymerase epsilon subunit B [Punctularia strigosozonata
HHB-11173 SS5]
Length = 531
Score = 142 bits (359), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 115/436 (26%), Positives = 195/436 (44%), Gaps = 49/436 (11%)
Query: 243 ISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN-NIN 301
I A+D+P + + + F + + +D++ R+R NIIRQ +R+ F+ +
Sbjct: 100 IDAYDMPLWHWSNERSTFDRSTSAQTISGSADSRVSAMRDRLNIIRQTVMRNEHFSPSTL 159
Query: 302 PNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ 354
P+ D E+L++L + + ++LGM++ KE + LED G V+LD SQ
Sbjct: 160 PSRDR------EHLLTLRSTKQLLGRPGERFLLLGMLAHNKEGKLCLEDADGSVELDFSQ 213
Query: 355 TSY-HPGLYTENCIVLVEGHYKDQ-ILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVS 412
GL+TE LVEG Y D L V A+G PP E+ + +R FG+ + G +
Sbjct: 214 LDQPSEGLFTEGSFALVEGDYTDDATLIVIAIGHPPCESRETARSIFGHIDFLGKGATTL 273
Query: 413 LKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-FVPNSTMATNPCR 471
L+ +++++ + LSDV LD+ L + + + FVP
Sbjct: 274 LEDAQYAVRIQRDLPDLNFFFLSDVWLDHPTTLRGLRKMFDNCVESNFVP---------- 323
Query: 472 VQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII-----------FLI 520
+++V L I DI K+ D+I F +
Sbjct: 324 ------KVIV----LCGNFSSKSISQGSAHDIQKYQENFESLADLILSYPILARTAHFAL 373
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
+P + T P L F+ S+ + VPN + TNPCR+++ QEI++ RE+++++
Sbjct: 374 IPGPHDMTANTLLPRRPLLSSFV-SKLRDKVPNIHIGTNPCRIKFYGQEIVIYREDIMAR 432
Query: 581 MCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ 640
M RN + + T++ Q L L +N+ P +L LYPLP V+L D+
Sbjct: 433 MLRNLVGVKPDVRTDDLKRYTVLDQSHLTPLTVNIQPTLSEFDHSLRLYPLPTAVVLADK 492
Query: 641 LNAYTIQNTDCIFINP 656
+ + + C NP
Sbjct: 493 YDNFQMTYEGCHVFNP 508
>gi|395328796|gb|EJF61186.1| epsilon DNA polymerase [Dichomitus squalens LYAD-421 SS1]
Length = 542
Score = 142 bits (357), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 121/452 (26%), Positives = 216/452 (47%), Gaps = 55/452 (12%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLF--RERYNIIR 288
++++S+ +F I A+++P +++ + F+ + L A A S++F R R N+I+
Sbjct: 86 SQLDSDSHLF-FIDAYEMPLWNWSVERSTFERA--QGTLTASGSADSRVFAARNRLNVIK 142
Query: 289 QRTLRHSLFN-NINPNADSVKLDWVEYLMSLTN-VNHKTVVLGMISQLKENRYFLEDPTG 346
Q LR+ F+ + P+ D L ++ L + ++ GM++ KE + LED G
Sbjct: 143 QCVLRNDHFSPSTLPSKDRQNLLTLKSTKQLLGRAGDRFLLFGMLTHSKEGKLCLEDQDG 202
Query: 347 IVQLDLSQTSY-HPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNI 404
V+LD SQ GL+TE C LVEG Y +D L V A+G PP E+ + +R +G+ +
Sbjct: 203 AVELDFSQLEQPSEGLFTEGCFALVEGDYTEDATLLVIAIGHPPCESREAARSIYGHIDF 262
Query: 405 WGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQ-GFVPNS 463
G + L+ ++++ + +LSDV LD L + + + F+P
Sbjct: 263 LGRGATTLLEDKQFASRVQLELPDLRFFVLSDVWLDKPDTLLGLRKMFDNCMENSFIP-- 320
Query: 464 TMATNPCRVQYCSQEILVVREELLSKMCRN--CIKFPEEG--DISKHVSKNNGEKDII-- 517
+++V +C N + P+ ++ K+ D+I
Sbjct: 321 --------------KVIV--------LCGNFTSVGIPQGNGRELRKYQDNFEALADLITS 358
Query: 518 ---------FLIVPKIYVEGTVTSKV-LSPALPKFITSEFQGFVPNSTMATNPCRVQYCS 567
F++VP ++ T+ S + P L F+ S + VPN A+NPCR+++
Sbjct: 359 YPLLTRTTHFVLVPGP-LDVTINSVLPRRPILSSFV-SRLKSRVPNVHFASNPCRIKFFE 416
Query: 568 QEILVVREELLSKMCRNCIKFPEE---GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYG 624
QEI++ RE+L+S+M RN + + D+ ++ V+T++ Q L+ + ++ P
Sbjct: 417 QEIVIFREDLMSRMLRNLVGVKPDVKNDDLERYLVQTILDQSHLMPVTTSIQPTLSELDH 476
Query: 625 ALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
AL LYPLP V+L D+ Y + C NP
Sbjct: 477 ALRLYPLPTAVVLADKYERYQMTYEGCHVFNP 508
>gi|145349598|ref|XP_001419216.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579447|gb|ABO97509.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 432
Score = 141 bits (356), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 103/406 (25%), Positives = 187/406 (46%), Gaps = 26/406 (6%)
Query: 260 FKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVK-LDWVEYLMSL 318
F K K+ + +++K L+R+R+ +++QR R F S + + + + SL
Sbjct: 2 FDEASKTAKIESAAESKIDLYRDRFLLLQQRLSRSRQFAKPTLQTSSTEGIAELTSIQSL 61
Query: 319 TNVNHKT-VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-D 376
V+ +T ++G +SQL++ R+++ED TG V++DL+ GL+TENCIV+ +G + D
Sbjct: 62 LGVSKETKFIMGCLSQLEDERFYMEDLTGTVRVDLTACERSAGLFTENCIVIAQGEVRPD 121
Query: 377 QILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSD 436
+ V AL FPP E +R + +G + + + + E ++LSD
Sbjct: 122 GVFEVMALTFPPAETRAATRNATNALDFFGAGHILRPNELEELEEKELERVGERFIVLSD 181
Query: 437 VHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK 496
V LD + + L + F F +S P + +
Sbjct: 182 VWLDQPRTFDRLAKM----FDAF--DSQEEDVPGLIVFMGDFTSKPFGPTHYDFRAYTEG 235
Query: 497 FPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTM 556
F + ++ + + E +F+ P + + + + P L + VP +
Sbjct: 236 FDKLAELLEEYPRLRQESRFVFIPGPG---DPGLNAALPRPGLQSSVIGSLLEKVPRAQF 292
Query: 557 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE--------GD------ISKHFVRTL 602
A+NP +++Y SQ+++ R++L +KM RNC+ P++ GD + KH T+
Sbjct: 293 ASNPAKIRYFSQDLVFFRDDLQAKMRRNCLMPPDDDKLPEIAPGDEWANRPVFKHLAATM 352
Query: 603 VSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQN 648
V Q L LP+ P+YW +L LYP P+ + LGD+ ++ N
Sbjct: 353 VQQAHLCPLPITQSPIYWEYDHSLWLYPAPNCIFLGDRTEQQSLAN 398
>gi|336373529|gb|EGO01867.1| hypothetical protein SERLA73DRAFT_177419 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386348|gb|EGO27494.1| hypothetical protein SERLADRAFT_460996 [Serpula lacrymans var.
lacrymans S7.9]
Length = 516
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 115/441 (26%), Positives = 201/441 (45%), Gaps = 32/441 (7%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
E+ E I AF++P + + + F+ + +D++ R R +II+Q
Sbjct: 87 AELLDPESHLYFIDAFEMPLWHWSVERGTFEKAQNLLTISGSADSRVLAMRNRLHIIKQS 146
Query: 291 TLRHSLFN-NINPNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKENRYFLE 342
LR+ F + P+ D E+L++L + + ++LGM+++ E + +E
Sbjct: 147 ILRNEHFAPSTLPSRDR------EHLVTLKSTKQLLGRPGERFLLLGMLARNMEGKLCVE 200
Query: 343 DPTGIVQLDLSQTSY-HPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFG 400
D G +LDLS+ GLYTE C LVEG Y +D L V A+G PP E +R +G
Sbjct: 201 DSDGSAELDLSRLEEPGEGLYTEGCFALVEGEYTEDGTLEVVAMGQPPCEDRDTTRSIYG 260
Query: 401 NQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQ-GF 459
+ + G S L+ ++ + LSDV LD+ K L + + + + F
Sbjct: 261 HIDFLGKGSTTLLEDSQYSRRIRGELSDLYFFFLSDVWLDHPKTFTGLQKMLDNCVENSF 320
Query: 460 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL 519
+P + + S+ I + + N F D+ S+ +F+
Sbjct: 321 IPKVIVLCG----NFTSRSISQGSARDIQRYQEN---FDALADLLASYSQITRTTHFVFV 373
Query: 520 IVP-KIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 578
P I G + + P L F+ S + VP + A+NPCR+++ QEI++ RE+ +
Sbjct: 374 PGPLDIINNGALPRR---PLLSSFV-SRIKAKVPKAHFASNPCRLKFFGQEIVIFREDTM 429
Query: 579 SKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
++M RN + D+ ++ V++++ Q L+ L N+ P AL LYPLP +
Sbjct: 430 ARMLRNTVGIKPNISGDDLRRYLVQSILDQSHLLPLTSNIQPTLPDYDHALRLYPLPTTL 489
Query: 636 ILGDQLNAYTIQNTDCIFINP 656
+L D+ Y + + C +NP
Sbjct: 490 VLADKYEKYKLTYSGCHVLNP 510
>gi|412993512|emb|CCO14023.1| predicted protein [Bathycoccus prasinos]
Length = 627
Score = 140 bits (354), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 119/480 (24%), Positives = 202/480 (42%), Gaps = 103/480 (21%)
Query: 249 PQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF----------N 298
P++ YD F +D+ + A++D+K ++RER++++RQR RH F
Sbjct: 150 PRYQYDETRNVFAKIDQPATMDAEADSKINVYRERFHLLRQRMSRHESFTKPAFGKKKKG 209
Query: 299 NINPNADSVKLDWVEYLMSLTNVNHK-TVVLGMISQLKENRYFLEDPTGIVQLDLSQTSY 357
N + + ++ + + L SL + VV+G +SQ+++ + LEDPTG +++DL+ +
Sbjct: 210 NEDASTNANNTNELTPLRSLVGQCYGPRVVMGCLSQVEDGIFHLEDPTGSMRIDLTAAAA 269
Query: 358 HPGLYTENCIVLVEGHYK--DQILHVDALGFPPPEASKNSRLYFGNQNIWG---GPSPVS 412
G++ ENC+V+ G + D I V ALG PP E + + + G G V+
Sbjct: 270 TSGMFCENCVVIATGEVRKTDGIFEVSALGHPPAETRRKTLEATNATDFMGAAQGGKHVA 329
Query: 413 L--KSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN-------- 462
L + ++ + K EK ++ V++SD +LD+ K L Q P
Sbjct: 330 LRPRDLDELIKTEKKAKDERFVVISDCYLDDSKCLRRLRNIFEVYDQSPKPPGLFVFMGD 389
Query: 463 -STMATNPCRVQYCS------------QEILVVREELLSKMCRNCIKFPEEGDISKHVSK 509
+ + P + + S E +REE CR
Sbjct: 390 FTRVPFGPTKYDFASYTKSFDQLADLLDEYPSIREE-----CR----------------- 427
Query: 510 NNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITS-EFQGFVPNSTMATNPCRVQYCSQ 568
F+ VP G TS P LP + + + A+NPC++++ SQ
Sbjct: 428 --------FVFVPGPGDPGN-TSAYPRPGLPAALRGHKITACLQKVEFASNPCKIRWHSQ 478
Query: 569 EILVVREELLSKMCRNCIKFP------EEGD----------------------ISKHFVR 600
+++ R++L ++ R C+ P EE D + H
Sbjct: 479 DLVFFRDDLQARARRGCVLPPVDDLGTEEDDERLQLDMSPRERERRKAMREKPLFHHLAM 538
Query: 601 TLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD----QLNAYTIQNTDCIFINP 656
TLV Q L LPL P+YW + A+ LYP P+ + LGD Q + + + +NP
Sbjct: 539 TLVQQSHLSPLPLTQMPIYWERDQAMWLYPAPNAIFLGDRSETQCKMTDVCGVETMMVNP 598
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 53/101 (52%), Gaps = 11/101 (10%)
Query: 43 PQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF----------N 92
P++ YD F +D+ + A++D+K ++RER++++RQR RH F
Sbjct: 150 PRYQYDETRNVFAKIDQPATMDAEADSKINVYRERFHLLRQRMSRHESFTKPAFGKKKKG 209
Query: 93 NINPNADSVKLDWVEYLMSLTNVNHK-TVVLGMISQLKENI 132
N + + ++ + + L SL + VV+G +SQ+++ I
Sbjct: 210 NEDASTNANNTNELTPLRSLVGQCYGPRVVMGCLSQVEDGI 250
>gi|449549810|gb|EMD40775.1| hypothetical protein CERSUDRAFT_45107 [Ceriporiopsis subvermispora
B]
Length = 541
Score = 140 bits (353), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 117/444 (26%), Positives = 200/444 (45%), Gaps = 65/444 (14%)
Query: 243 ISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN-NIN 301
+ AFD+P + + + F+ + + +D++ R R ++IRQ LR+ F+ +
Sbjct: 98 VDAFDMPLWHWSTERSSFEKAAGPLTVSSSADSRILAMRNRLDVIRQAVLRNDHFSPSTI 157
Query: 302 PNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ 354
P+ D E+L++L + + ++LGM++ KE + LED G V+LD SQ
Sbjct: 158 PSRDR------EHLLTLRSTKQLLGRPGERFLLLGMLTYSKEGKLCLEDQDGSVELDFSQ 211
Query: 355 TSY-HPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVS 412
GL+TE C+ +VEG Y +D L V A+G PP E+ + +R +G+ + G S
Sbjct: 212 LDQPSEGLFTEGCVAMVEGEYTEDTTLIVIAIGHPPCESRETARSIYGHVDFLGRGSTTL 271
Query: 413 LKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRV 472
L+ T++ + +LSDV LD + F G
Sbjct: 272 LEDTQLATRLRLELPDLSFFVLSDVWLDRPET-----------FSGL---------QLMF 311
Query: 473 QYCSQEILVVREELLSKMCRNCIKFPEEG---DISKHVSKNNGEKDII------------ 517
Q+C + + K+ C F +G + ++ V + D++
Sbjct: 312 QHC------IDNHFIPKVIILCGNFSSKGISKNSAREVKRYQENFDVLADCIVQYPLITR 365
Query: 518 ---FLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVR 574
F+ VP ++ TV S + L + S + VP ATNPCR+++C QEI++ R
Sbjct: 366 YTHFVFVPG-SLDITVNSVLPRRPLLSSLVSRLKSRVPKVHFATNPCRIKFCDQEIVIFR 424
Query: 575 EELLSKMCRNCIKFPEE--GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
E+L++KM RN + + D K F +++ Q L L ++ AL LYPLP
Sbjct: 425 EDLMTKMLRNLVGVKPDVRNDDLKRF--SILDQSHLSPLTYSIQATLSDFDHALRLYPLP 482
Query: 633 DLVILGDQLNAYTIQNTDCIFINP 656
++L D+ + + + C NP
Sbjct: 483 TALVLADKSDRFEMTYEGCHVFNP 506
>gi|290996568|ref|XP_002680854.1| predicted protein [Naegleria gruberi]
gi|284094476|gb|EFC48110.1| predicted protein [Naegleria gruberi]
Length = 568
Score = 139 bits (350), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 122/456 (26%), Positives = 210/456 (46%), Gaps = 63/456 (13%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
+I+A D P + Y+ K F+ + ++ K ++FR+RY +I Q+ +R FN +
Sbjct: 102 IINAEDKPFYSYNMSRKVFEPEQRDTTFFSEVQQKVEVFRDRYKMIYQKVMRGKQFNPTD 161
Query: 302 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ-TSYHPG 360
PNA + L ++ L+ + ++G+I++ + Y +ED G+ Q+D+S+ T+ + G
Sbjct: 162 PNA--ISLTSIDSLLGSRGSKY---IMGLITRKSADIYQIEDLNGVTQVDISESTTNNRG 216
Query: 361 LYTENCIVLVEGHYKD--QILHVDALGFPPPEASKNSRLYF--GNQ---NIWGGPSPVSL 413
E V+ G Y ++ A+ P E +S + G +++G SP L
Sbjct: 217 TILEGSFVIASGVYDSVTKVFKASAIVLPTCEDRDDSERFLSVGRSSMLDMFGSSSPEKL 276
Query: 414 KSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC------------------------ 449
K + E N+NA IV++SDV LD V L
Sbjct: 277 K---ELKNKEDINKNAFIVVVSDVCLDKPLVFEKLALLFEYIKWNQHNRTSEDSYELMPA 333
Query: 450 ------EFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDI 503
FI+ FQ + +S+ +T RV Y E L+KM +FP +
Sbjct: 334 MFLFIGNFISRPFQFYSSSSSSSTTSDRVLYQKN------FEKLAKMIEE--RFP---NF 382
Query: 504 SKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKF--ITSEFQGFVPNSTMATNPC 561
+ +N +F+ P + T + + P P I+ F+ +PNS ATNPC
Sbjct: 383 IYNSKENENAPTFVFVPGPN---DPTFSPNGVLPRSPILDSISRTFKSRIPNSFFATNPC 439
Query: 562 RVQYCSQEILVVREELLSKMCRNC-IKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYW 620
R+++ +QE++V R++L +M R+ I+ EE I + T+++Q L ++L PV+W
Sbjct: 440 RIRFYTQELVVFRQDLQQQMRRHTVIEHKEETQIYQSMCETVLAQSHLSPFAMHLQPVFW 499
Query: 621 SQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
Q +LSL+P P +IL D+ + + C NP
Sbjct: 500 EQDHSLSLFPSPHSLILADRCQPFNTKVEGCTCFNP 535
Score = 42.4 bits (98), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 51/97 (52%), Gaps = 5/97 (5%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
+I+A D P + Y+ K F+ + ++ K ++FR+RY +I Q+ +R FN +
Sbjct: 102 IINAEDKPFYSYNMSRKVFEPEQRDTTFFSEVQQKVEVFRDRYKMIYQKVMRGKQFNPTD 161
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENI 132
PNA + L ++ L+ + ++G+I++ +I
Sbjct: 162 PNA--ISLTSIDSLLGSRGSKY---IMGLITRKSADI 193
>gi|409049733|gb|EKM59210.1| hypothetical protein PHACADRAFT_181204 [Phanerochaete carnosa
HHB-10118-sp]
Length = 538
Score = 138 bits (348), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 110/434 (25%), Positives = 202/434 (46%), Gaps = 42/434 (9%)
Query: 243 ISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINP 302
I AF++P +++ + F+ +D + R R NII+Q LR+ F+
Sbjct: 96 IDAFEMPLWNWSTERSAFERALAPLTGSGSADTRISAIRNRLNIIKQTILRNDHFS---- 151
Query: 303 NADSVKLDWVEYLMSLTN-------VNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQT 355
++ E+L++L + + ++ GM+S KE + LED G V+LD SQ
Sbjct: 152 -PSTIAARDREHLLTLRSTKQLLGRAGQRFLLFGMLSHSKEGKICLEDEDGAVELDFSQL 210
Query: 356 SY-HPGLYTENCIVLVEGHYKDQ-ILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSL 413
GL+TE C LVEG Y D+ L + A+G PP E+ + ++ +G+ + G +
Sbjct: 211 DQPSEGLFTEGCFALVEGDYTDEATLQIIAIGHPPCESREAAKSIYGHIDFLGKGATTLA 270
Query: 414 KSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-FVPNSTMA----TN 468
+ T++ ++ + +LSDV LD+ L + + + F+P + +
Sbjct: 271 EDNQLATRLREDWPDLRCFVLSDVWLDHPDTMQGLKKLFDNCVENQFIPRLIVLCGNFSQ 330
Query: 469 PCRVQYCSQEILVVRE--ELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI-IFLIVPKIY 525
Q S+EI ++ + L+++ + F + H G +DI + I+P+
Sbjct: 331 RGVAQGNSREIRRYQDGFDSLAELIASYPVFTRQ----THFILVPGPRDITVNSILPRKP 386
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNC 585
+ + T K+ S VP + +NPCR++ C QE+++ RE+L+++M RN
Sbjct: 387 IISSFTGKLKSK-------------VPKLHLGSNPCRIKLCDQELVIFREDLMARMLRNL 433
Query: 586 IKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN 642
+ E D+ ++ V++++ Q L+ L ++ L LYPLP V+L D+ +
Sbjct: 434 VGVKPDVREDDLKRYLVQSVLDQSHLMPLTTSIQSTLPEYDHTLRLYPLPTAVVLADKYD 493
Query: 643 AYTIQNTDCIFINP 656
Y + C NP
Sbjct: 494 RYQMTYEGCHVFNP 507
>gi|389745512|gb|EIM86693.1| DNA polymerase epsilon subunit B [Stereum hirsutum FP-91666 SS1]
Length = 558
Score = 138 bits (348), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/478 (24%), Positives = 206/478 (43%), Gaps = 43/478 (8%)
Query: 243 ISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN-NIN 301
++AFD+P +++ + F + + ++++ R R NIIRQ R+ F +
Sbjct: 99 VNAFDMPLWNWSDERGTFDKSSQPLSTFSSAESRVMATRNRLNIIRQTISRNEHFTPSTV 158
Query: 302 PNADSVKLDWVEYLMSLTN-VNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSY-HP 359
P+ D L V+ L + ++ GM+S KE + LED GIV+LD SQ
Sbjct: 159 PSRDRQHLITVKSTKQLLGRAGQRFLLFGMLSHTKEGKLCLEDQDGIVELDFSQMDEPSD 218
Query: 360 GLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNR 418
GL+TE LVEG Y +D V +G PP E + SR +G+ + G + L+
Sbjct: 219 GLFTEGAFALVEGDYTEDSTFLVYGMGHPPSETRETSRSIYGHVDFLGKGATTPLEDAQY 278
Query: 419 MTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG-FVPNSTMATNPCRVQYCSQ 477
++ ++ LSDV LD+ L + + F+P
Sbjct: 279 AMRIREDFGAINFFFLSDVWLDHPDCMKGLSRIFDNCIESNFIP---------------- 322
Query: 478 EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII-----------FLIVPKIYV 526
+++V L I DI K+ + + D+I F++VP
Sbjct: 323 KVMV----LCGNFTSRGIAQGNSRDIQKYQTGFDALADLISSYPLITQTTHFVLVPGPLD 378
Query: 527 EGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI 586
+ P L F T+ + +P +A+NPCR+++ QEI+V+RE+++++M RN +
Sbjct: 379 LAMNSILPRRPLLSSF-TARLRAKIPRLQLASNPCRIKFFGQEIVVLREDMMARMLRNLV 437
Query: 587 KFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTI 646
+ +++ Q L ++ PV AL L+PLP V++ D+ +Y +
Sbjct: 438 GVKPAVRTEELKQFSILDQSHLAPFSNDIQPVISDYDHALRLFPLPTAVVIADKYESYRL 497
Query: 647 QNTDCIFINPVFHNTVRNAFEVEKEHHA-VSSGVWLIQSSFKPEVIYVGELITWLLGH 703
T C NP V +FE A S W + +++ + + ++LGH
Sbjct: 498 TYTGCHVFNP--GRFVGRSFEFASYSPANKESEAWYVLAAY---LTGIDNADGYMLGH 550
>gi|170091000|ref|XP_001876722.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648215|gb|EDR12458.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 530
Score = 137 bits (346), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/435 (27%), Positives = 201/435 (46%), Gaps = 24/435 (5%)
Query: 230 RTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQ 289
+ I+ E +F VI+AF++P++ + + F+ ++++ R+R NII+Q
Sbjct: 84 KESIDPENHLF-VINAFEMPRWTWSQERGTFERSGAPLTSSGSAESRIASIRDRLNIIKQ 142
Query: 290 RTLRHSLFN-NINPNADSVKLDWVEYLMSLTNV-NHKTVVLGMISQLKENRYFLEDPTGI 347
LR+ F + P+ D +L + L + ++LGM++ KE + +ED G
Sbjct: 143 CVLRNEHFAPSTLPSRDRERLVTLRSTKQLLGRPGERFLLLGMLAHNKEGKLCIEDADGS 202
Query: 348 VQLDLSQTSY-HPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIW 405
V+LD S+ GL+T+ C LVEG Y ++ L + A+G PP E + +R +G+ +
Sbjct: 203 VELDFSKLDEPGDGLFTDGCFALVEGEYTQEATLEIIAIGQPPCEPREIARSIYGHIDFL 262
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCE-FITSEFQGFVPNST 464
G S L+ T++ + LSDV LD+ + L + F F+P
Sbjct: 263 GKGSTSLLEDSQFATRIREELSELHFFFLSDVWLDHPQTLPGLRKMFDNCTENDFIPAVI 322
Query: 465 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP-- 522
+ + S+ I + + N F E D+ S + F++VP
Sbjct: 323 VMCG----NFTSKSISHGNGREVQRYQDN---FDELADLI--ASYPLITRKTHFILVPGP 373
Query: 523 -KIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM 581
I V T+ + L AL + + V ATNPCR+++ QEI+V RE+L+++M
Sbjct: 374 LDITVNSTLPRRPLLAAL----VARLEAKVHKIHFATNPCRIKFFDQEIVVFREDLMARM 429
Query: 582 CRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQL 641
RN + + D+ ++ V Q L L +N+ P +L LYPLP +IL D+
Sbjct: 430 LRNVVGV--KPDVRSEDLKRFVDQSHLTPLTINIQPTLSDYDHSLRLYPLPTALILADKY 487
Query: 642 NAYTIQNTDCIFINP 656
Y + T C NP
Sbjct: 488 ERYKVTYTGCHVFNP 502
>gi|312101446|ref|XP_003149646.1| hypothetical protein LOAG_14095 [Loa loa]
Length = 260
Score = 137 bits (344), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/270 (31%), Positives = 149/270 (55%), Gaps = 18/270 (6%)
Query: 330 MISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPP 389
M++Q Y +ED TG +++DL ++++H GL+T+ CI+++EG + V A+G P
Sbjct: 1 MLTQRNPGVYEIEDLTGAIEVDLKESTFHKGLFTDGCIMMLEGRSIGGVFRVSAVGLAPI 60
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC 449
E++K +R YFG N +GG V+ S R+ + + N+ A +++SDV LD+ ++ N +
Sbjct: 61 ESAKMTRNYFGITNWFGGKGTVACGSQIRLRTLCERNDRARFILMSDVWLDDSRILNAIN 120
Query: 450 EFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSK 509
E I + F + +A C +CSQ V + ++ + ++ + K
Sbjct: 121 ELIFA----FTDSQLLAFIICG-NFCSQ---VGTADAYHRI------YDGFSHLAAILQK 166
Query: 510 NN-GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQ 568
+ ++++ F+ +P + ++ S + P LP F E VPN + A+NPCR+QY +Q
Sbjct: 167 DVLADRNVHFIFIPGPD-DPSLNSILPRPPLP-FELFELMKDVPNCSFASNPCRIQYTNQ 224
Query: 569 EILVVREELLSKMCRNCIKFPE-EGDISKH 597
EI+++R +L+ KMCRN I P DI +H
Sbjct: 225 EIVIMRHDLVEKMCRNSIHMPSTTADIPEH 254
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/49 (53%), Positives = 36/49 (73%), Gaps = 1/49 (2%)
Query: 460 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE-EGDISKHV 507
VPN + A+NPCR+QY +QEI+++R +L+ KMCRN I P DI +HV
Sbjct: 207 VPNCSFASNPCRIQYTNQEIVIMRHDLVEKMCRNSIHMPSTTADIPEHV 255
>gi|353228610|emb|CCD74781.1| putative DNA polymerase epsilon subunit b [Schistosoma mansoni]
Length = 570
Score = 135 bits (341), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 132/474 (27%), Positives = 208/474 (43%), Gaps = 98/474 (20%)
Query: 273 SDAKSKLFRERYNIIRQ---------RTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNH 323
S S LFRE ++I +LR +L + + N +L +EYL++ +
Sbjct: 68 SYTSSMLFRESFDISSVTRCKSFFVCSSLRAALDGSHSTN---YRLRQIEYLLASGSRID 124
Query: 324 KTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDA 383
TVVLG+ISQL+E +++ EDP+GIVQL+L Q +H GL E I L+EG Y ++IL+V
Sbjct: 125 STVVLGLISQLREGKWYAEDPSGIVQLNLQQAVFHEGLLPEGSIALIEGFYDEKILYVTG 184
Query: 384 LGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEK------NNENAMIVILSDV 437
+G PP E + SR F N +GG + + TKM K +AM+VIL +
Sbjct: 185 IGLPPCEPPEISRRAFSVGNPFGGCDTSDSLAASLDTKMHKLLTTTQAGSDAMLVILGET 244
Query: 438 HLDN----DKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRN 493
+LD D++ + T F+ + + + C++ L++R L +
Sbjct: 245 NLDRPDTLDQLTTLFSGYSTCAPVAFILSGNFLSADSIGKTCTERRLILRRLLRQLITIF 304
Query: 494 CIKFPEEGDISKHVSKNNGEKDIIFLIVPK--IYVEGTVTSKVLSPALPKFITSEFQGFV 551
FP+ S+H S++N +I + P+ +Y + + P L + S+ +
Sbjct: 305 KNNFPDSE--SQHTSQSNQSPKLILIPGPEDPVYAPKHILPR---PGLGIDLISDNKDRS 359
Query: 552 PNST-----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFP----------------- 589
+S +A+NPCR++ ++EI++ R + R+CI P
Sbjct: 360 SSSCPPWLHLASNPCRLRLYTREIVIFRVNYSRLLVRHCIHLPTLNNLDSYVETSENIES 419
Query: 590 --------------EEG---------DISKH----------------FVRTLVSQGTLVS 610
EG I +H R L SQ L+
Sbjct: 420 STSRENSETAVDMDSEGVATTSSSTPSIKQHTTSKKYKTTNEYLGQCLARCLASQAHLLP 479
Query: 611 LPLNLCPVYWSQYGALSLYPLPDLVILGD-----QLNAYT---IQNTDCIFINP 656
L ++ PVYW ALSL PLP+LVI + LNA + +C FINP
Sbjct: 480 LLGHIAPVYWYYDQALSLNPLPNLVIAIEPEPLANLNASQPGLVTTGNCRFINP 533
>gi|393215638|gb|EJD01129.1| epsilon DNA polymerase [Fomitiporia mediterranea MF3/22]
Length = 535
Score = 135 bits (339), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 115/442 (26%), Positives = 200/442 (45%), Gaps = 39/442 (8%)
Query: 233 INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTL 292
++ EE ++ I A+++P + + F+ + +D++ R+R++II+Q L
Sbjct: 92 LDPEEHLY-FIDAYEMPLWHWSQTRATFEKAPHSPTISGTADSRITAIRDRHDIIKQTIL 150
Query: 293 RHSLFN-NINPNADSVKL-DWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQL 350
R+ F+ + P D +L + L + ++ G++ KE + LED G V+L
Sbjct: 151 RNDHFSPSTLPGKDRDRLLNLRSTKQLLGRAGERFLLFGLLGYSKEGKLCLEDTEGKVEL 210
Query: 351 DLSQTSY-HPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGP 408
D SQ G +TE C LVEG Y +++ L V A+G PP E + SR FG+ + G
Sbjct: 211 DFSQLDIPSEGFFTEGCFALVEGDYTEEETLTVIAIGHPPCERREVSRSIFGHVDFLGKG 270
Query: 409 SPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG------FVPN 462
S L+ + ++ + EN M LSDV LD+ + L + F+
Sbjct: 271 SSTPLEDMEIEQRVSREFENLMFHCLSDVWLDHPETFVGLASIFDRCIEAEAIPLVFILC 330
Query: 463 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP 522
+ Q +EI +E ++ +P +++N F+ VP
Sbjct: 331 GNFTSRGI-AQGNGREIQSYQEN-FDRLADLIASYP-------IIARNTH-----FVFVP 376
Query: 523 KIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMA-----TNPCRVQYCSQEILVVREEL 577
+T+ + P P + S F G + NS +A +NPCR++ QEI+V RE++
Sbjct: 377 GPL---DITANSVLPRRP--LLSSFVGKL-NSKLAKAHFLSNPCRIKCFGQEIVVYREDM 430
Query: 578 LSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+++M RN + + D+ + V++++ Q L N+ P+ L LYP+P
Sbjct: 431 MARMLRNLVGVKPDVQNDDMKRFLVQSIIDQAHLSPFTKNVQPILSEYDHTLRLYPMPSA 490
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
VIL D+ Y + C NP
Sbjct: 491 VILADKYEGYELTYEGCHVFNP 512
>gi|242079433|ref|XP_002444485.1| hypothetical protein SORBIDRAFT_07g022680 [Sorghum bicolor]
gi|241940835|gb|EES13980.1| hypothetical protein SORBIDRAFT_07g022680 [Sorghum bicolor]
Length = 431
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 104/348 (29%), Positives = 161/348 (46%), Gaps = 44/348 (12%)
Query: 233 INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTL 292
+ S V+ AF +P+F YDP K F + + ++ K+ L+R+RY ++ QR
Sbjct: 89 VTSARSALRVVDAFLVPRFHYDPIKKVFYEHTGRLAVHGEAGDKASLYRDRYQVLLQRLA 148
Query: 293 RHSLFNNINPNADSVKLD----WVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIV 348
R F+ P D+V + + + SL + ++G+ISQL+E +++LED TG V
Sbjct: 149 RDKYFSK--PAFDTVATEDSSCEITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAV 206
Query: 349 QLDLSQTSYHPGLYTENCIVLVEGH-YKDQILHVDALGFPPPEASKNSRLYFGNQNIWGG 407
+DLS G + EN +++ EG + I V+ GFPP E + S + +GG
Sbjct: 207 PIDLSNAKITSGFFVENTVIVAEGELLSNGIFQVNTCGFPPLEDREASVSLLMGLDFFGG 266
Query: 408 ---PSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC---------EFITSE 455
PS +L R++ +EK N M VILSDV LDN + L E + S
Sbjct: 267 GVIPSEEAL----RLSSLEKKAVNDMFVILSDVWLDNPETMEKLAVVLDGYDSVEVVPSL 322
Query: 456 FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
FV + PC + + S E L + L +M +++ ++
Sbjct: 323 ---FVLMGNFCSRPCNLAFNSFEELRFQFGKLGEMI---------------AARSRLKEH 364
Query: 516 IIFLIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPNSTMATNPCR 562
FL VP G SK L ALPK++ E Q +PN+ +NPCR
Sbjct: 365 SRFLFVPGPDDAG--PSKALPRCALPKYLIEELQKHIPNAIFVSNPCR 410
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/109 (28%), Positives = 54/109 (49%), Gaps = 6/109 (5%)
Query: 27 INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTL 86
+ S V+ AF +P+F YDP K F + + ++ K+ L+R+RY ++ QR
Sbjct: 89 VTSARSALRVVDAFLVPRFHYDPIKKVFYEHTGRLAVHGEAGDKASLYRDRYQVLLQRLA 148
Query: 87 RHSLFNNINPNADSVKLD----WVEYLMSLTNVNHKTVVLGMISQLKEN 131
R F+ P D+V + + + SL + ++G+ISQL+E
Sbjct: 149 RDKYFS--KPAFDTVATEDSSCEITSIQSLIGCTGRRWIMGVISQLEER 195
>gi|170587260|ref|XP_001898396.1| DNA polymerase epsilon subunit B [Brugia malayi]
gi|158594222|gb|EDP32808.1| DNA polymerase epsilon subunit B, putative [Brugia malayi]
Length = 334
Score = 134 bits (338), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 75/251 (29%), Positives = 130/251 (51%), Gaps = 12/251 (4%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
EC + + +E + VI F +P+ YD K VD S+ L+RER +
Sbjct: 77 ECASSRSSKQESLIRVIDLFTVPRLRYDEQRKMLVAVDGLSSAIGQSNDAKILYRERLKL 136
Query: 287 IRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
+ QR LR+S F + +L VE L+ + +V++GM++Q Y +ED TG
Sbjct: 137 VMQRALRNSAFEH-------YQLCTVEALLGTPERSDNSVLIGMLTQRDPGVYEIEDLTG 189
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWG 406
+++DL + ++H GL+T+ CI+++EG + V A+G P E++ +R YFG N +G
Sbjct: 190 AIEVDLKEATFHKGLFTDGCIMMLEGRSVGGLFRVSAVGLAPVESATVTRNYFGVTNWFG 249
Query: 407 GPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMA 466
G V+ S R+ + + N+ +++SDV LD+ ++ + + E I + F + +A
Sbjct: 250 GEGTVACGSQIRLRTLCERNDRTRFILMSDVWLDDSRILSAINELIFA----FTDSQLLA 305
Query: 467 TNPCRVQYCSQ 477
C +CSQ
Sbjct: 306 FIICG-NFCSQ 315
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 7/121 (5%)
Query: 7 NPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
P +++ + NEC + + +E + VI F +P+ YD K VD
Sbjct: 63 GPVLSFNEFKSAVNECASSRSSKQESLIRVIDLFTVPRLRYDEQRKMLVAVDGLSSAIGQ 122
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMIS 126
S+ L+RER ++ QR LR+S F + +L VE L+ + +V++GM++
Sbjct: 123 SNDAKILYRERLKLVMQRALRNSAFEH-------YQLCTVEALLGTPERSDNSVLIGMLT 175
Query: 127 Q 127
Q
Sbjct: 176 Q 176
>gi|358060440|dbj|GAA93845.1| hypothetical protein E5Q_00491 [Mixia osmundae IAM 14324]
Length = 568
Score = 132 bits (332), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 119/452 (26%), Positives = 198/452 (43%), Gaps = 63/452 (13%)
Query: 232 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 291
E + Q VI+AFD+P+ ++ + K F+ K + + +K++ R+R+ I +Q
Sbjct: 98 EDSDTAQYLKVINAFDMPRINWSFEKKAFERAAAKPSMVGAATSKAQYLRDRFGIAKQVI 157
Query: 292 LRHSLF---------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLE 342
LR F N P SVK L + G++++ + ++ LE
Sbjct: 158 LRSEYFCPPAVGGHDRNSYPKITSVK-------NLLGRQGGDFTLFGLLARTEIGQFCLE 210
Query: 343 DPTGIVQLDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGN 401
D V LD S+ + T+ VLV G + + I V + PP E ++ FG+
Sbjct: 211 DLDDRVVLDFSEARQLVKMITQGSFVLVFGRFTSESIFFVSEITHPPAEGRNVTKTIFGH 270
Query: 402 QNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKV----RNNLCEFITSEF- 456
+ G + ++ R+ EK NA +VI SD+ L+ KV R L +T++
Sbjct: 271 VDFLGTGA-LTHTEETRLLASEKAQPNAFVVI-SDLFLNQPKVLLKFRAMLQALVTADAI 328
Query: 457 -QGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
FV ++ P + S + + S + + FP+ +
Sbjct: 329 PAVFVLCGNFSSIPFLLDGKST---LAYTQYFSALAEILLSFPQV------------LQQ 373
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
F++VP + + T + P LP I +P T ATNPCR+ Y SQEI+V+R+
Sbjct: 374 AHFVLVPGPH-DPFDTMTLPRPPLPAPIVKALMK-IPKITFATNPCRITYKSQEIVVLRD 431
Query: 576 ELLSKMCRNCIKFPE---EGDISK------------------HFVRTLVSQGTLVSLPLN 614
+LLS++ RNC+ F E G+I H + ++ QG L LP++
Sbjct: 432 DLLSRVLRNCVWFDEVHPTGEIDDEQGTGLHAQMAQNWQPEHHLAQLVLDQGHLCPLPIS 491
Query: 615 LCPVYWSQYGALSLYPLPDLVILGDQLNAYTI 646
+ PV W L LYP+P ++L D+ + Y I
Sbjct: 492 VRPVLWEYDHTLRLYPMPTALVLADKYSPYEI 523
>gi|219130121|ref|XP_002185221.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403400|gb|EEC43353.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 574
Score = 129 bits (324), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 130/511 (25%), Positives = 224/511 (43%), Gaps = 86/511 (16%)
Query: 221 WLKLSSECCRTEINSEEQI--------FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 272
W ++ E T ++ + +++AF P+ ++ K F + +K R L
Sbjct: 93 WDDIAGEAADTGRSASTTMTTTDAWDGLQIVNAFQSPKLVFEVMRKNFAVDEKPRSLFGT 152
Query: 273 SDAKSKLFRERYNIIRQRTLRHSLFN--NINPNADSV--KLDWVEYLMSLTNVNHKTVVL 328
++ K + +RY ++ QR LRH LF +++ S+ KL VE L+ + N ++L
Sbjct: 153 AEDKISMLAQRYAMVHQRILRHKLFRPADLHARQQSIQHKLTPVESLLGKHD-NQSLLIL 211
Query: 329 GMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLY-TENCIVLVEGHYKDQILHVDALGFP 387
G++ Q++E +++LEDPTG VQ+ S G + TE+CI+LVEG ++D V LG P
Sbjct: 212 GILLQIEEGQWYLEDPTGQVQISFQDASAVDGFFVTEHCILLVEGMFRDGTFCVHRLGHP 271
Query: 388 PPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNN 447
E S+ + L Q ++ P K V + M K + +V+LSD+HLD +V
Sbjct: 272 LLE-SRETSLQTIRQQVF---HPSFRKPVLTVGSMTKESS---LVVLSDLHLDQPRVLQQ 324
Query: 448 LCEFITSEFQGFVPNS-----TMATNPCRVQYCSQEILVVREELLSKM-CRNCIKFPEEG 501
L E + + + + P+ M Q ++ + +EL + + C ++
Sbjct: 325 L-ESLFATYDKYAPDRLPLFVLMGNFSSTPQSHPSQLTPLLDELATLIGCFANLR----- 378
Query: 502 DISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPC 561
H G D + ++P LP + + + +A+NPC
Sbjct: 379 -AHAHFCLVPGPHDGVGYVLP----------------LPALRKTHALDKIAHVHLASNPC 421
Query: 562 RVQYCSQEILVVREELLSKMCRNCIKFP-----EEGDISKH-------FVRTLVSQGTLV 609
R+Q+ Q+I+V R +LL + I+ P D +H ++T++ QG +
Sbjct: 422 RIQWRDQDIVVFRYDLLHLFQHHQIRLPGTDRAASDDDDQHGRQPHCRLLKTILDQGHVT 481
Query: 610 SLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVE 669
P+ P++W+ ALSLYPLP +ILG D FH EV
Sbjct: 482 --PVAGVPIFWNLDHALSLYPLPTALILGG----------DTATQKDAFH-------EVY 522
Query: 670 KEHHAVSSGVW-----LIQSSFKPEVIYVGE 695
H + G W + + +PE V +
Sbjct: 523 GGVHVLHPGAWDDGSYAVYTPGRPETAMVAD 553
Score = 42.0 bits (97), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 35/65 (53%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
+++AF P+ ++ K F + +K R L ++ K + +RY ++ QR LRH LF
Sbjct: 120 LQIVNAFQSPKLVFEVMRKNFAVDEKPRSLFGTAEDKISMLAQRYAMVHQRILRHKLFRP 179
Query: 94 INPNA 98
+ +A
Sbjct: 180 ADLHA 184
>gi|198424917|ref|XP_002121989.1| PREDICTED: similar to polymerase (DNA directed), epsilon 2 [Ciona
intestinalis]
Length = 335
Score = 127 bits (320), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 61/158 (38%), Positives = 101/158 (63%), Gaps = 5/158 (3%)
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
+ ++F+ P+ Y G + + PA+P T EF VPN+ A+NPCR+QYC+QE++
Sbjct: 167 AQSKMVFVPSPEDYGLGQILPR---PAIPDVATDEFCAKVPNAIFASNPCRIQYCTQEMI 223
Query: 572 VVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
+ R++++ KMC+N I+ P DI++ FV++++SQG L LP+++ PVYWS ALSLYP+
Sbjct: 224 IYRDDIVKKMCKNSIRGPTT-DINEQFVKSVLSQGHLSPLPIHINPVYWSHDHALSLYPV 282
Query: 632 PDLVILGDQ-LNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PD+++ D+ + I DC +NP ++ F+V
Sbjct: 283 PDVIVFSDRHTEPFDITQIDCKCLNPGSFSSGDYCFKV 320
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 39/54 (72%)
Query: 445 RNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
R + + T EF VPN+ A+NPCR+QYC+QE+++ R++++ KMC+N I+ P
Sbjct: 188 RPAIPDVATDEFCAKVPNAIFASNPCRIQYCTQEMIIYRDDIVKKMCKNSIRGP 241
>gi|19113313|ref|NP_596521.1| DNA polymerase epsilon catalytic subunit B, Dpb2
[Schizosaccharomyces pombe 972h-]
gi|74582831|sp|O94263.1|DPB2_SCHPO RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|3810838|emb|CAA21799.1| DNA polymerase epsilon catalytic subunit B, Dpb2
[Schizosaccharomyces pombe]
Length = 594
Score = 127 bits (319), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 120/476 (25%), Positives = 202/476 (42%), Gaps = 66/476 (13%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 296
E+ F V+ AF +P+F YD K F L + L A + A + + R+N++ R LR+
Sbjct: 136 EKYFRVLDAFKMPKFKYDSSRKVFVLSKQSPTLMASASACTDMLNRRFNVVYSRILRNES 195
Query: 297 FNNIN-----PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
F + + +L + L L + ++ G+++ + +LED VQLD
Sbjct: 196 FQTPSFSGSFSQTGTYQLTPIRNL--LGRAGNTFLLFGLLTIAPDGTLWLEDLDSQVQLD 253
Query: 352 LSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSP 410
+SQ GL+ C+VLV G + + V LG PP E S N +I G
Sbjct: 254 VSQAEQGFGLFCPGCLVLVNGQFLSSGLFLVFELGHPPIERRDASLKALNNLDILG--LN 311
Query: 411 VSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCE-FITSEFQGFVP-------- 461
+ K + + E+ ++ V +S+VHLDN + L + F E VP
Sbjct: 312 MDAKQLALLRHAEQAYQSQAFVCISEVHLDNHQTFYALEKIFQKYESSEAVPFCIILCGS 371
Query: 462 --NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL 519
+S + +QY +E +K+ + KFP+ + +K F+
Sbjct: 372 FMSSAFHNSGSSIQY---------KEGFNKLAASLEKFPKICEKTK------------FI 410
Query: 520 IVPKIYVEGTVTSKVLSP--ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREEL 577
VP T L P ++P + Q ++ A+NPCR+ + SQE+L+ R+++
Sbjct: 411 FVPGPNDPWTTNGISLMPKHSIPLHFVNRIQRVCKHTIFASNPCRIIFFSQEVLIYRDDI 470
Query: 578 LSKMCRNCIKF----------------PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWS 621
+ RN +KF ++ + V+T++ Q L P P+ W
Sbjct: 471 SGRFQRNSLKFGKTPQGTSNINSIPLAEQQVHQQRKLVKTVLDQSHLSPFPSRTRPILWD 530
Query: 622 QYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINP-----VFHNTVRNAFEVEKE 671
ALS++PLP + L D + +A+ + C NP H + F V+KE
Sbjct: 531 FDYALSVFPLPSCMGLIDSESSAFDVHYGGCPTFNPGALLLGVHYNWQEVFPVKKE 586
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 31 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 90
E+ F V+ AF +P+F YD K F L + L A + A + + R+N++ R LR+
Sbjct: 136 EKYFRVLDAFKMPKFKYDSSRKVFVLSKQSPTLMASASACTDMLNRRFNVVYSRILRNES 195
Query: 91 F 91
F
Sbjct: 196 F 196
>gi|299747780|ref|XP_001837253.2| epsilon DNA polymerase [Coprinopsis cinerea okayama7#130]
gi|298407675|gb|EAU84870.2| epsilon DNA polymerase [Coprinopsis cinerea okayama7#130]
Length = 546
Score = 127 bits (318), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 113/440 (25%), Positives = 204/440 (46%), Gaps = 29/440 (6%)
Query: 233 INSEEQIFSVISAFDIPQFDYDPDLKKFK-------LVDKKRKLCADSDAKSKL--FRER 283
I+ + +F VI A+D+P++ + + F L+ L + +S++ R+R
Sbjct: 88 IDPDNHLF-VIDAYDMPRWVWSQERVHFHVDSQWILLLRISTSLSSAGTPESRIASMRDR 146
Query: 284 YNIIRQRTLRHSLFN-NINPNADSVKLDWVEYLMSLTN-VNHKTVVLGMISQLKENRYFL 341
+II+Q LR+ F + P D +L + L + ++LG+++ KE + L
Sbjct: 147 LHIIKQCVLRNEHFAPSTLPAHDRERLVTLRSTKQLLGRAGERFLLLGLLAHNKEGKVCL 206
Query: 342 EDPTGIVQLDLSQTSY-HPGLYTENCIVLVEGHYKDQ-ILHVDALGFPPPEASKNSRLYF 399
ED G V+LD S+ G +T+ C LVEG Y ++ L + A+G PP E + SR +
Sbjct: 207 EDSDGRVELDFSRLDEPGDGFFTDGCFALVEGEYTEEGTLEIIAIGQPPCEPRETSRSIY 266
Query: 400 GNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQG- 458
G+ + G + L+ ++++ + SDV LD+ + L + + +
Sbjct: 267 GHIDFLGKGATSLLEDRQYALRVKQELADLHFFFFSDVWLDHPQTLPGLQKIFDNCIEND 326
Query: 459 FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF 518
FVP + + S+ I + + N F GD+ I+F
Sbjct: 327 FVPKLIVMCG----NFTSKTIAHGNARDIQRYQDN---FDALGDLISSYHNIAHSTHIVF 379
Query: 519 LIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL 578
+ P +V K P L F+ + + P + ATNPCR+++ +QE+++ RE+L+
Sbjct: 380 VPGPLDITVNSVLPK--RPILAAFV-NRLKSKFPKAHFATNPCRIKFFNQELVIFREDLM 436
Query: 579 SKMCRNCIKFPEEGDISKHFVR--TLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI 636
+KM RN I + D+ ++ T++ Q L L L++ P A+ LYPLP +++
Sbjct: 437 AKMLRNIIGV--KADVKSEDLKRFTILDQTHLSPLSLHIQPTLSDYDHAMRLYPLPTVLV 494
Query: 637 LGDQLNAYTIQNTDCIFINP 656
L D+ + + + T C NP
Sbjct: 495 LADKYDRFKMTYTGCHVFNP 514
>gi|339239599|ref|XP_003381354.1| DNA polymerase epsilon subunit 2 [Trichinella spiralis]
gi|316975620|gb|EFV59030.1| DNA polymerase epsilon subunit 2 [Trichinella spiralis]
Length = 378
Score = 122 bits (306), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 68/176 (38%), Positives = 103/176 (58%), Gaps = 8/176 (4%)
Query: 290 RTLRHSLFNNINP---NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
R L H LF P NA +L VE L TV++GM+SQLK + + LED TG
Sbjct: 19 RLLNHELFTIDEPSVFNAKKYQLRTVESLCGFQGSLKSTVIVGMMSQLKHHTFHLEDLTG 78
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWG 406
++++L++T++ PGLY EN IV+VEG D ILH +GFPP E+++ S + N +++G
Sbjct: 79 DIEMNLTETNFQPGLYVENMIVMVEGFVSDSILHATTIGFPPIESAEQSLNHLDNMDLFG 138
Query: 407 GPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPN 462
G + ++N ++++E+ + AM + LSD+ LD+ KVR L F GF N
Sbjct: 139 GQKEIKELNLNELSQLEETFD-AMFIFLSDIFLDSPKVRKAL----NCLFDGFSEN 189
>gi|340374781|ref|XP_003385916.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Amphimedon
queenslandica]
Length = 133
Score = 120 bits (302), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 51/104 (49%), Positives = 80/104 (76%), Gaps = 1/104 (0%)
Query: 553 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSL 611
N T +NPCR+Q+C++EI+V E++L+KM R+C++FP EG D++ HF++T++SQG L L
Sbjct: 3 NVTFCSNPCRIQFCTREIVVFCEDILTKMSRHCVRFPTEGTDMANHFMKTILSQGHLCPL 62
Query: 612 PLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFIN 655
PL+ P+YW AL LYPLPDLV++GD+ N +++ + DC+ +N
Sbjct: 63 PLHSRPIYWMCDHALRLYPLPDLVMIGDKCNPFSVTSGDCMVVN 106
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
Query: 462 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG-DISKHVSK 509
N T +NPCR+Q+C++EI+V E++L+KM R+C++FP EG D++ H K
Sbjct: 3 NVTFCSNPCRIQFCTREIVVFCEDILTKMSRHCVRFPTEGTDMANHFMK 51
>gi|449467705|ref|XP_004151563.1| PREDICTED: DNA polymerase epsilon subunit 2-like, partial [Cucumis
sativus]
Length = 292
Score = 120 bits (300), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 88/282 (31%), Positives = 132/282 (46%), Gaps = 28/282 (9%)
Query: 385 GFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKV 444
GFPP E S Q+ +G + + R +EK N M VILSD+ LD+++
Sbjct: 5 GFPPLEERGKSLKLLAGQDFFGD-GVLPKEETLRRADLEKKAVNDMFVILSDIWLDSEEA 63
Query: 445 RNNLCEFITSEFQG-------FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF 497
L E I F+ FV ++PC + + S L ++ L KM
Sbjct: 64 MGKL-ETILDGFENVEVVPSLFVLMGNFCSHPCNIAFNSFSSLRLQFGKLGKM------- 115
Query: 498 PEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMA 557
I+ H N K +F+ P TV + ALPK++T E Q V N+ +
Sbjct: 116 -----IAAHPRLNEHSK-FLFIPGPDDAGPSTVLPRC---ALPKYLTEELQMHVSNAIFS 166
Query: 558 TNPCRVQYCSQEILVVREELLSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLN 614
+NPCRV++ +QEI+ R++LL +M R+C+ P E D +H V T+ Q L LPL
Sbjct: 167 SNPCRVRFYTQEIVFFRQDLLYRMRRSCLIPPSTEETSDPFEHLVATITHQSHLCPLPLV 226
Query: 615 LCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+ P+ W+ L LYP P +++LGD+ + T NP
Sbjct: 227 IQPIIWNYDHCLHLYPTPHVIVLGDRSKQQAFKYTGITCFNP 268
>gi|341895998|gb|EGT51933.1| hypothetical protein CAEBREN_25197 [Caenorhabditis brenneri]
Length = 367
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 9/213 (4%)
Query: 238 QIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 297
++ +V AF + +DY+P+L+K L K L ADS + S R+R+ +++QR R +
Sbjct: 88 KLLNVFDAFSLQPYDYEPELRKMVLRKGKTTLAADSASFSHASRQRFLLVKQRAARCASL 147
Query: 298 NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ-TS 356
N K E L S T VVLGM++Q K + Y +ED +G ++++ + T
Sbjct: 148 KNF-------KFTTCELLSSSTKTIQSVVVLGMLTQQKADCYHIEDLSGSIEVEFKEDTK 200
Query: 357 YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYF-GNQNIWGGPSPVSLKS 415
+H L+ E+CI + EG +++ +LHV+ + P E+++ +R N+N +GG ++ +
Sbjct: 201 FHHALFHEHCIAIFEGSFENSVLHVNEVAMVPVESAEMTRKELSSNENWFGGEDKIAFRC 260
Query: 416 VNRMTKMEKNNENAMIVILSDVHLDNDKVRNNL 448
R+ E+ I+ LSDV LD+ K L
Sbjct: 261 SERLRSALAKQEDTSIIFLSDVFLDDAKSMKAL 293
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 72
+LI T +C ++ +V AF + +DY+P+L+K L K L ADS + S
Sbjct: 69 ELIRDTFRQCKSKGTQDAGKLLNVFDAFSLQPYDYEPELRKMVLRKGKTTLAADSASFSH 128
Query: 73 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
R+R+ +++QR R + N K E L S T VVLGM++Q K +
Sbjct: 129 ASRQRFLLVKQRAARCASLKNF-------KFTTCELLSSSTKTIQSVVVLGMLTQQKAD 180
>gi|341901720|gb|EGT57655.1| hypothetical protein CAEBREN_31221 [Caenorhabditis brenneri]
Length = 370
Score = 119 bits (297), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 66/213 (30%), Positives = 114/213 (53%), Gaps = 9/213 (4%)
Query: 238 QIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 297
++ +V AF + +DY+P+L+K L K L ADS + S R+R+ +++QR R +
Sbjct: 88 KLLNVFDAFSLQPYDYEPELRKMILRKGKTTLAADSASFSHASRQRFLLVKQRAARCASL 147
Query: 298 NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ-TS 356
N K E L S T VVLGM++Q K + Y +ED +G ++++ + T
Sbjct: 148 KNF-------KFTTCELLSSSTKTIQSVVVLGMLTQQKADCYHIEDLSGSIEVEFKEDTK 200
Query: 357 YHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYF-GNQNIWGGPSPVSLKS 415
+H L+ E+CI + EG +++ +LHV+ + P E+++ +R N+N +GG ++ +
Sbjct: 201 FHHALFHEHCIAIFEGSFENSVLHVNEVAMVPVESAEMTRKELSSNENWFGGEDKIAFRC 260
Query: 416 VNRMTKMEKNNENAMIVILSDVHLDNDKVRNNL 448
R+ E+ I+ LSDV LD+ K L
Sbjct: 261 SERLRSALAKQEDTSIIFLSDVFLDDAKSMKAL 293
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 57/119 (47%), Gaps = 7/119 (5%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 72
+LI T +C ++ +V AF + +DY+P+L+K L K L ADS + S
Sbjct: 69 ELIRDTFRQCKSKGTQDAGKLLNVFDAFSLQPYDYEPELRKMILRKGKTTLAADSASFSH 128
Query: 73 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
R+R+ +++QR R + N K E L S T VVLGM++Q K +
Sbjct: 129 ASRQRFLLVKQRAARCASLKNF-------KFTTCELLSSSTKTIQSVVVLGMLTQQKAD 180
>gi|328726047|ref|XP_003248725.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Acyrthosiphon
pisum]
Length = 318
Score = 117 bits (292), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 91/309 (29%), Positives = 145/309 (46%), Gaps = 49/309 (15%)
Query: 384 LGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDK 443
+ PP E ++ S++YFG + + + ++LKS N + ++N MIV +SDV LD+ K
Sbjct: 1 MALPPCERTEISKIYFGESSNFSDSNDLNLKSCNPKLLEYEKSKNRMIVFVSDVFLDDPK 60
Query: 444 VRNNLCEFITSEFQGFVPNSTMATN---PCRV--QYCSQEILVVREELLSKMCRNCIKFP 498
V + S F P + + CR+ +QE+ +L + N
Sbjct: 61 VLRKFHTLLNS-FNDLAPVAIVMMGDYLSCRIPSHAYAQELKTHLNQLGHFLHDN----- 114
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLS-PALPKFITSEFQGFVPNSTMA 557
+ KH + L P G + +L P +P+F+T EF+ VP
Sbjct: 115 -TPVLCKHTM-------FVLLSGPGDRYSGAAGASILPRPLIPEFLTEEFRRLVPRCVFT 166
Query: 558 TNPCRVQYCSQEILVVREELLSK-----------MCRNCIKFPEEG--DISKHFVRTLVS 604
TNPCR+QYC+Q+I ++R + L K M RN E DI K++++TL S
Sbjct: 167 TNPCRMQYCTQQIHIIRADGLMKKTANYDIRHGSMDRNKSTSATESDDDIIKNYIKTLES 226
Query: 605 QGTLVSLPLNLCPVYWSQYG-ALSLYPLPDLVILGDQ---------------LNAYTIQN 648
Q L+++PL++CP YW +LSLYP+PD+V + D ++ +
Sbjct: 227 QSHLITVPLDVCPTYWPLASHSLSLYPMPDVVCIADSNAPEYSTVGSNDSNSSSSKMSSS 286
Query: 649 TDCIFINPV 657
+ CIF NPV
Sbjct: 287 SGCIFFNPV 295
>gi|170587262|ref|XP_001898397.1| pole2 protein [Brugia malayi]
gi|158594223|gb|EDP32809.1| pole2 protein, putative [Brugia malayi]
Length = 198
Score = 115 bits (289), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 59/146 (40%), Positives = 89/146 (60%), Gaps = 3/146 (2%)
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEIL 571
++++ F+ VP + ++ S + P LP F E VPN + A+NPCR+QY +QEI+
Sbjct: 21 ADRNVHFIFVPGP-DDPSLNSILPRPPLP-FQLFELMRDVPNCSFASNPCRIQYTNQEIV 78
Query: 572 VVREELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++R +L+ KMCRN I P DI +HF T+ S G L LPL++ PV W L+LYP
Sbjct: 79 IMRHDLVEKMCRNSIHMPSTTADIPEHFCHTIASVGHLSPLPLHISPVIWQMDSYLTLYP 138
Query: 631 LPDLVILGDQLNAYTIQNTDCIFINP 656
LPDLV++ D+ + Q + +F+NP
Sbjct: 139 LPDLVVIADKFEHFHYQLENTLFVNP 164
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 460 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE-EGDISKH 506
VPN + A+NPCR+QY +QEI+++R +L+ KMCRN I P DI +H
Sbjct: 58 VPNCSFASNPCRIQYTNQEIVIMRHDLVEKMCRNSIHMPSTTADIPEH 105
>gi|297726503|ref|NP_001175615.1| Os08g0466050 [Oryza sativa Japonica Group]
gi|255678510|dbj|BAH94343.1| Os08g0466050 [Oryza sativa Japonica Group]
Length = 311
Score = 114 bits (286), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 84/301 (27%), Positives = 128/301 (42%), Gaps = 61/301 (20%)
Query: 360 GLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNR 418
G + EN ++L EG + I V+ GFPP E + S + +GG ++ + R
Sbjct: 42 GFFVENTVILAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGG-GVIAAEETVR 100
Query: 419 MTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQE 478
++ +EK N M VILSDV LD +SEF E
Sbjct: 101 LSTLEKKAMNDMFVILSDVWLD------------SSEFGKL-----------------GE 131
Query: 479 ILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPA 538
++ R L I PE+ SK + +
Sbjct: 132 MIAARSRLKEHSRFLFIPGPEDAGPSKALPRCT--------------------------- 164
Query: 539 LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---EEGDIS 595
LPK++T E Q +PN+ +NPCRV++ +QEI+ +++LL +M R+C+ P E D
Sbjct: 165 LPKYLTEELQKHIPNAIFVSNPCRVKFYTQEIVFFQQDLLYRMRRSCLIPPTTEETSDPF 224
Query: 596 KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFIN 655
+H V T+ Q L LPL + P+ W+ L LYP P ++LGD+ + N
Sbjct: 225 EHLVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVLGDKSEQKAFKYAGITCFN 284
Query: 656 P 656
P
Sbjct: 285 P 285
>gi|148704673|gb|EDL36620.1| polymerase (DNA directed), epsilon 2 (p59 subunit), isoform CRA_b
[Mus musculus]
Length = 234
Score = 113 bits (283), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 63/179 (35%), Positives = 94/179 (52%), Gaps = 30/179 (16%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++L+ E
Sbjct: 76 ECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLE 135
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +++ + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 136 RYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 195
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNS 395
+H GLYTE C VL EG ++DQ+ H +A GFPP E S +
Sbjct: 196 --------------------FHSGLYTEACFVLAEGWFEDQVFHANAFGFPPTEPSSTT 234
Score = 76.3 bits (186), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSD 68
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 68 SVVEAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTAR 127
Query: 69 AKSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVL 122
K++L+ ERY I+ QRT RH LF +++ + +L +E L+ T+ +VL
Sbjct: 128 DKAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVL 187
Query: 123 GMISQLKE 130
GMI+QLKE
Sbjct: 188 GMITQLKE 195
>gi|149051335|gb|EDM03508.1| rCG61685 [Rattus norvegicus]
Length = 231
Score = 112 bits (279), Expect = 1e-21, Method: Composition-based stats.
Identities = 64/179 (35%), Positives = 94/179 (52%), Gaps = 30/179 (16%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
EC ++ + E IF++I AFDIP F Y+ + KKF + + + K++L+RE
Sbjct: 73 ECSQSVDETIEHIFNIIGAFDIPHFIYNSERKKFLPLSMTNHAAPTIFGTARDKAELYRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNS 395
+H GLYTE C VL EG ++DQ+ H +A GFPP E S +
Sbjct: 193 --------------------FHSGLYTEACFVLAEGCFEDQVFHANAFGFPPTEPSSTT 231
Score = 75.9 bits (185), Expect = 7e-11, Method: Composition-based stats.
Identities = 44/127 (34%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDA 69
++E EC ++ + E IF++I AFDIP F Y+ + KKF + + +
Sbjct: 66 VVEAAVQECSQSVDETIEHIFNIIGAFDIPHFIYNSERKKFLPLSMTNHAAPTIFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+RERY I+ QRT RH LF ++ + + +L +E L+ T+ +VLG
Sbjct: 126 KAELYRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKVGDVIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>gi|356529451|ref|XP_003533305.1| PREDICTED: LOW QUALITY PROTEIN: DNA polymerase epsilon subunit
2-like [Glycine max]
Length = 324
Score = 111 bits (278), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 132/281 (46%), Gaps = 28/281 (9%)
Query: 385 GFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKV 444
GFPP E S + + G +++ R+ +MEK N M VIL+D+ LDN++
Sbjct: 37 GFPPLEDRDKSLEFLSGHDFLDGGIFTKEETI-RLREMEKGTVNDMFVILADIWLDNEEA 95
Query: 445 RNNLCEFITSEFQG-------FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF 497
L E + +F+ FV ++ PC + S L + L +M
Sbjct: 96 LRKL-ETVLDDFESVEVVPSLFVFMGNFSSKPCNRSFHSNSSLRMXFGKLGEM------- 147
Query: 498 PEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMA 557
I+ H K LI+P G T+ + ALP ++T E Q +P++ +
Sbjct: 148 -----IASHPRLKEHSK---LLIIPGPDDAGPSTA-LPRCALPNYLTEELQKHIPHAIFS 198
Query: 558 TNPCRVQYCSQEILVVREELLSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLN 614
+NP RV++ +QEI+ + +LL++M R+C+ P E D+ +H V T+ Q L LPL
Sbjct: 199 SNPFRVKFYTQEIVFFQHDLLNRMXRSCLVPPSTEETDDLFQHLVATITHQSHLCPLPLT 258
Query: 615 LCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFIN 655
+ P W+ L LYP P ++LGD+ +NT + N
Sbjct: 259 VQPNIWNYDHCLYLYPTPHTIVLGDRSLWNAFKNTGITYFN 299
>gi|444320007|ref|XP_004180660.1| hypothetical protein TBLA_0E00800 [Tetrapisispora blattae CBS 6284]
gi|387513703|emb|CCH61141.1| hypothetical protein TBLA_0E00800 [Tetrapisispora blattae CBS 6284]
Length = 691
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 122/510 (23%), Positives = 221/510 (43%), Gaps = 99/510 (19%)
Query: 225 SSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDAKSKLFRER 283
S E TE++ ++ F +I A+D +F YDP +F+ +K+K+ + + K LF+ R
Sbjct: 173 SLEDQATELDWQD-YFKLIGAWDQQKFTYDPIKSQFRYSQSQKKKILPNIEDKLNLFKTR 231
Query: 284 YNIIRQRTLRHSLFNNI---NPNADSVKL---------DWVEYLMSLTNV-------NHK 324
YN+ + R LR+ F N+ NP + V + + ++ +S+T +
Sbjct: 232 YNLTKDRVLRNEDFQNVDTFNPLSSIVAMNNELNQQSTNAIDNNVSITPIKNLIGQDGRN 291
Query: 325 TVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHY--KDQILHV 381
+++GMI + R+ +ED +G +++++SQT G Y CIV+ EG Y HV
Sbjct: 292 FLIMGMIYKSPRGRWCMEDASGSIEINISQTIPTDGTYYVPGCIVIAEGIYFSAGDTFHV 351
Query: 382 DALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKN-NENAMIV 432
++ PP E N+ GN ++ G ++ ++R+ +E+ +N ++
Sbjct: 352 TSMTQPPGEKRLNTLEAIGNLDLLGVHGQSNVNYISRLDNELKIRLHYLERELTDNIFVI 411
Query: 433 ILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR 492
+ D+ LD K + L + + +P V ++ + + M
Sbjct: 412 LGGDLFLDELKTFDALKKIF----------EKLNEDPPIVLILLGSF--SQKPIFATMNN 459
Query: 493 NCIKFPEEGDISKHVSKNNGE-------------KDIIFLIVPKIYVE-GTVTSKVLSPA 538
+ I E+ KNN + F+ +P + G+ S S
Sbjct: 460 HRISSSEQ-------YKNNFDTLATLLTQFENLIATTTFIFIPGVNDPWGSSVSLGSSTT 512
Query: 539 LP-KFITSEFQGFV----PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---- 589
LP + I E+Q + + TNP R+ Y SQEI+++R++L + R+ I+FP
Sbjct: 513 LPQRNIPEEYQSKINRICKKTYWGTNPMRLAYLSQEIIIMRDDLRDRFKRHNIEFPIVVE 572
Query: 590 ------------EEGDI-----------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGAL 626
+ DI S+ V+TL+ QG L +N+ P+ W L
Sbjct: 573 KQIKEQELSIDKSDDDIPIDKLPSHLKESRKIVKTLLDQGHLSPFLMNIRPIVWDLDFCL 632
Query: 627 SLYPLPDLVILGD-QLNAYTIQNTDCIFIN 655
++YP+P L+IL D + + + C IN
Sbjct: 633 NMYPIPSLLILSDSSCDKFDVTYNGCKVIN 662
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
F +I A+D +F YDP +F+ +K+K+ + + K LF+ RYN+ + R LR+ F
Sbjct: 187 FKLIGAWDQQKFTYDPIKSQFRYSQSQKKKILPNIEDKLNLFKTRYNLTKDRVLRNEDFQ 246
Query: 93 NIN 95
N++
Sbjct: 247 NVD 249
>gi|312067594|ref|XP_003136816.1| pole2 protein [Loa loa]
Length = 144
Score = 110 bits (275), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 50/107 (46%), Positives = 70/107 (65%), Gaps = 1/107 (0%)
Query: 551 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE-GDISKHFVRTLVSQGTLV 609
VPN + A+NPCR+QY +QEI+++R +L+ KMCRN I P DI +HF T+ S G L
Sbjct: 4 VPNCSFASNPCRIQYTNQEIVIMRHDLVEKMCRNSIHMPSTTADIPEHFCHTVASVGHLS 63
Query: 610 SLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
LPL++ PV W L+LYPLPDLV++ D+ + Q +F+NP
Sbjct: 64 PLPLHISPVIWQMDSYLTLYPLPDLVVIADKFEHFHYQLEGTLFVNP 110
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/48 (52%), Positives = 35/48 (72%), Gaps = 1/48 (2%)
Query: 460 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE-EGDISKH 506
VPN + A+NPCR+QY +QEI+++R +L+ KMCRN I P DI +H
Sbjct: 4 VPNCSFASNPCRIQYTNQEIVIMRHDLVEKMCRNSIHMPSTTADIPEH 51
>gi|367017222|ref|XP_003683109.1| hypothetical protein TDEL_0H00390 [Torulaspora delbrueckii]
gi|359750773|emb|CCE93898.1| hypothetical protein TDEL_0H00390 [Torulaspora delbrueckii]
Length = 687
Score = 107 bits (267), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 127/534 (23%), Positives = 218/534 (40%), Gaps = 119/534 (22%)
Query: 236 EEQI-----FSVISAFDIPQFDYDP--------DLKKFKLVDKKRKLCADS----DAKSK 278
EEQ+ F VI++ + ++ YDP +KK ++ R L D ++ +
Sbjct: 158 EEQLDWRNYFKVINSSEQAKYSYDPVKLQFTFTPVKKSTPSEEFRSLIKDRVPDINSNTS 217
Query: 279 LFRERYNIIRQRTLRHSLFNN---INPNADSVKLDW--------VEYLMSLTNV------ 321
+F R+ +IR R LR+ F N NP + + + MS+T +
Sbjct: 218 IFSNRFYLIRDRLLRNDSFQNADDFNPLSSIAAMQQDLNNGSGEISRAMSVTQIKNLLGR 277
Query: 322 -NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHY--KDQ 377
++LG++S+ + + LEDP+G +++D+SQ GL Y C+VL EG Y
Sbjct: 278 DGQNFLLLGLLSKNAKGGWSLEDPSGCIEIDISQAYPTKGLYYVPGCVVLAEGIYFTVGH 337
Query: 378 ILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENA 429
HV ++ PP E +N+ GN ++ G S V R+ K +EK +
Sbjct: 338 KFHVSSVTHPPGERRENTLEAIGNLDLLGLHGQASSNYVARLDKELKIRLHLLEKELTDH 397
Query: 430 MIVILSDVHL---------DNDKVRNNLCE------FITSEFQGFVPNSTMATNPCRVQY 474
+IL V + + KV + + + F +++M++
Sbjct: 398 RFIILGGVFILGWNLIPWKHSSKVLTTISDDPPTAIILHGSFTAVPVHASMSSRNVSSTT 457
Query: 475 CSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVE-GTVTSK 533
Q I +L+S +++N+ F+ VP I G+ S
Sbjct: 458 LYQSIFDDLADLISSF--------------DEIAQNS-----TFVFVPGINDPWGSTVSM 498
Query: 534 VLSPA-----LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF 588
+ A +P T + + + A+NP R+ Y SQEI+VVR+++ ++ R+ I F
Sbjct: 499 GSAHAWPQQPVPSRFTQKLKRVCKDVIWASNPTRLAYLSQEIVVVRDDITDRLKRHSIAF 558
Query: 589 P-------------------------EEGDI-------SKHFVRTLVSQGTLVSLPLNLC 616
P +E D S+ V+T++ QG L ++
Sbjct: 559 PMEELTQGIKLMEPKSDDATSISQLVKENDQLPTRIRESRKLVKTILDQGHLSPFVTSVR 618
Query: 617 PVYWSQYGALSLYPLPDLVILGDQLNAY-TIQNTDCIFINPVFHNTVRNAFEVE 669
P+ W+Q AL+L+P+P +I D Y + C INP T R A +E
Sbjct: 619 PLVWNQDNALTLHPVPSTLIFCDTTAPYFDVTYNGCKTINPGKFITGRRARYLE 672
>gi|406606007|emb|CCH42644.1| DNA polymerase epsilon subunit B [Wickerhamomyces ciferrii]
Length = 646
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/483 (23%), Positives = 215/483 (44%), Gaps = 75/483 (15%)
Query: 224 LSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADS--DAKSKLFR 281
+S + R I+ E F +I AF P FDY+ K+++ K + DA LF+
Sbjct: 161 ISPQPIRNTIDWRE-YFRIIDAFQQPLFDYNHHRKQYEPSKTKDSSFQSTSIDANIGLFQ 219
Query: 282 ERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQL 334
+R++I++ R LR+ F + + NA S + + S+T V N + ++ GM++ L
Sbjct: 220 KRFHIVKDRLLRNENFQSNSFNAFSSVANDQDGTNSITQVKNLLGRNNQRFMLFGMLT-L 278
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKDQILHVDALGFPPPEASK 393
++L+D + +QLD++Q + G Y +VL +G + + + ++G PP E
Sbjct: 279 MNGEWYLQDNSDKIQLDINQADPNLGSYYVPGNMVLCDGIHSNGKFYCSSIGHPPGERRT 338
Query: 394 NSRLYFGNQNIWGGPSPVSLKSV--NRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEF 451
++ GN + G + + + R+ +E+ ++ +I++ ++ +LD+ K + L +
Sbjct: 339 DTLEAIGNLDFLGIHANMRIDRELHTRLKLLERELDHKIIILGANCYLDDLKTLDALTKL 398
Query: 452 IT--SEFQGFVP-----NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDIS 504
T SE + +P N + ++P ++ S+ + L + KFP IS
Sbjct: 399 FTRLSEDENDLPISIIFNGSFTSSP---KHTSE-----YKNLFDSLASILEKFPV---IS 447
Query: 505 KHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPA--LPKFITSEFQGFVPNSTMATNPCR 562
G +++F I E + L P +PK + + ++NP R
Sbjct: 448 -------GRINLVF-----IPGENDLWQAPLWPKHPIPKLFGNRITRVARSVNWSSNPTR 495
Query: 563 VQYCSQEILVVREELLSKMCRNCIKFPEEGDI---------------------------- 594
+ Y SQEI++ R+++ + RN + FP+
Sbjct: 496 MVYLSQEIVIARDDIGGRFRRNTVLFPQLSKDSDEEDEDEYDERRTEIEKLESLPPKVSE 555
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIF 653
++ V+T++ QG L NL PV W L L PLP ++IL D + A+ + C
Sbjct: 556 ARKVVKTVLDQGHLSPFTKNLKPVIWHLDHTLHLSPLPTVLILTDPTSPAFDVTYNGCKC 615
Query: 654 INP 656
+NP
Sbjct: 616 LNP 618
>gi|123976717|ref|XP_001314579.1| DNA polymerase epsilon subunit B family protein [Trichomonas
vaginalis G3]
gi|121897132|gb|EAY02262.1| DNA polymerase epsilon subunit B family protein [Trichomonas
vaginalis G3]
Length = 508
Score = 107 bits (266), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 100/436 (22%), Positives = 188/436 (43%), Gaps = 46/436 (10%)
Query: 238 QIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 297
Q+F SAFD P+F++D + + + + + +K L+RER+ I++ + F
Sbjct: 77 QVFDFQSAFDAPKFEFDMNTQNLVPSTQPKSILGKGPSKISLYRERFQILKYSLINSKAF 136
Query: 298 NNINP---NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLS- 353
+ D L V+ ++ + TVV I + Y +ED +G++ L +S
Sbjct: 137 AKSALKFWSDDDGSLSIVDIATLVSKPHDSTVVFIGILDYEGEVYTVEDESGVINLAISP 196
Query: 354 QTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSL 413
+ + G+ CIV+V+G ++ +G PP + + F N+ W P
Sbjct: 197 ECQFFGGILPVGCIVVVQGKALGDYVNALVIGHPPALTTSD----FMNK-FWSLPYDPFG 251
Query: 414 KSVNR------MTKMEKNNENAMIVILSDVHLDNDKVRNNLCEF--ITSEFQGFVPNSTM 465
++NR + + + +ENA+I++ SDV +D V + + EF + + PN
Sbjct: 252 WNLNRESMSNLQSILHEEHENALILVFSDVWID---VPSCVTEFSHVLQNYDSSPPNM-- 306
Query: 466 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII-----FLI 520
I++ + N +K E D K + K + E + F+
Sbjct: 307 -------------IILCGSFTQKPLPFNGMK-QFERDFRKFIKKISDEHTAMIQNSKFVF 352
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
+P + G KV P L + P + +NPC++++ S+ I V R++++S+
Sbjct: 353 IPSLTDPG--APKVF-PRL--LFQDSIKNMFPEAIFMSNPCKIRFLSRTITVFRDDIMSR 407
Query: 581 MCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ 640
+ R + E + ++ + T++ Q L L PV W + L+P PD +IL D
Sbjct: 408 LARASPRTVPEENEHENLLITIIHQAHLTPTDLAHAPVAWEYDHTMRLFPAPDCLILADA 467
Query: 641 LNAYTIQNTDCIFINP 656
+ + D + NP
Sbjct: 468 AAPWRSEEGDTVAFNP 483
>gi|254580998|ref|XP_002496484.1| ZYRO0D01166p [Zygosaccharomyces rouxii]
gi|238939376|emb|CAR27551.1| ZYRO0D01166p [Zygosaccharomyces rouxii]
Length = 686
Score = 101 bits (252), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 121/511 (23%), Positives = 205/511 (40%), Gaps = 106/511 (20%)
Query: 237 EQIFSVISAFDIPQFDYDP-------DLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQ 289
++ F +++A + P+F+YDP +K K ++ + KL D + LF RY ++R
Sbjct: 163 KEYFKIVNANEQPRFNYDPVKMQFIPSARKSKPLNNEFKLPEIKDYAT-LFSTRYYLVRD 221
Query: 290 RTLRHSLFNNI---NPNADSVKLDWVEYLMSLTNVNHKTV---------------VLGMI 331
R +R+ F N+ NP + V L +N N+ + +LG++
Sbjct: 222 RVMRNENFQNVDTLNPLSSMVGLQQELQNGKSSNSNNMVITQIKNLIGRDGQNFLLLGLL 281
Query: 332 SQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHY--KDQILHVDALGFPP 388
+ + LEDP+G +++D+SQT G Y C VL EG Y HV ++ PP
Sbjct: 282 RTNAKGNWCLEDPSGSIEIDISQTLPTSGSYYVSGCFVLAEGIYFTAGNKFHVASITHPP 341
Query: 389 PEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHL 439
E + GN ++ G SP + V R+ K +EK + VIL D+ L
Sbjct: 342 GERRDFTLNAIGNLDMLGLHSPSNSSLVPRLDKDLKIRLHLLEKELVDHKFVILGGDMFL 401
Query: 440 DNDKVRNNLCEFIT---------SEFQGFVPNSTMATNPCRVQYCSQEILVVRE-----E 485
D L + +T FQG + +T P S+ + +
Sbjct: 402 DQLSTMEALRKVLTILDENPPTVIVFQG-----SFSTTPVHASLSSKTTSLSTHYKNNFD 456
Query: 486 LLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITS 545
L+ + E + N+ K +I L + + ++ P T
Sbjct: 457 TLATLLARFENIVENSTLVFVPGVNDPWKSMISLGAAYSWPQRSI---------PSSFTQ 507
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---------------- 589
+ N A+NP R+ Y SQEI++ R+++ ++ R+ ++FP
Sbjct: 508 KMDKVCKNIIWASNPTRIAYISQEIVIARDDISQRLRRHSVEFPTVEESKEQELIEFQQQ 567
Query: 590 ----EEGDI-------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGAL 626
+E D S+ V+TL+ QG L N+ PV W AL
Sbjct: 568 MQRRKEADATSIHELFKSTDQLPAKVKESRKLVKTLLDQGHLSPFTTNVRPVVWDLDHAL 627
Query: 627 SLYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
+++P+P +IL D + + + C INP
Sbjct: 628 TMHPIPSTLILDDTTASPFDVTYNGCKAINP 658
>gi|156846679|ref|XP_001646226.1| hypothetical protein Kpol_1013p40 [Vanderwaltozyma polyspora DSM
70294]
gi|156116900|gb|EDO18368.1| hypothetical protein Kpol_1013p40 [Vanderwaltozyma polyspora DSM
70294]
Length = 739
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 124/533 (23%), Positives = 212/533 (39%), Gaps = 116/533 (21%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKL-----------------------CADSDAK 276
F VI+A + +F YDP +F RK D D+K
Sbjct: 200 FKVINASEQQRFSYDPYKLQFVFQPSFRKANLAQNSYNNNNNSTRLQSLNQLRLPDVDSK 259
Query: 277 SKLFRERYNIIRQRTLRHSLFN---NINP--------NADSVKLDWVEYLMSLTNV---- 321
+F RYN+IR R +R+ F N NP NA + + + MSLT +
Sbjct: 260 ISIFPTRYNLIRDRIMRNEAFQNDTNFNPLSSMISMKNAMNSNENSIASGMSLTLIKNLL 319
Query: 322 --NHKT-VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHY--K 375
N K ++LG+I + + ++ LED +G+V++DL+Q G+ Y CIVLVEG Y
Sbjct: 320 GRNGKNFLLLGLIKKNSKGKWALEDTSGVVEIDLTQAIPTSGVYYVPGCIVLVEGIYFTS 379
Query: 376 DQILHVDALGFPPPEASKNSRLYFGNQNIWG-----GPSPVSLKSVN---RMTKMEKN-N 426
HV ++ PP E + + GN ++ G P+ ++ N R+ +EK
Sbjct: 380 ANTFHVSSITHPPAEKREITLEAIGNIDLLGVHGISTPNYIAKLDSNLKLRLHFLEKELI 439
Query: 427 ENAMIVILSDVHLDNDKVRNNLCEFITS---------EFQGFVPNSTMATNPCRVQYCSQ 477
++ +++ D+ LD+ + L + T FQG ++ + + S
Sbjct: 440 DHKFLILGGDLFLDDMNTISALRKLFTKINDDPPTVIIFQGSFSSTPVHASTQNNGISST 499
Query: 478 EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSP 537
+ L+ + E + N+ ++ L +I+ + ++
Sbjct: 500 SRYKNGFDTLATLLSQFDYLTESSTMIFIPGANDPWSSMVSLGATRIWPQKSI------- 552
Query: 538 ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI----------- 586
P + T N +NP R+ Y +QEI++ R+++ + RN I
Sbjct: 553 --PNYFTQRINRVCKNVIWGSNPTRIAYLAQEIVITRDDIAERFKRNSIYLPAVEEAKKE 610
Query: 587 ------------------------------KFPEEGDISKHFVRTLVSQGTLVSLPLNLC 616
K P + S+ V+T++ QG L ++
Sbjct: 611 ELLIQQEKERERLINDPDNIQLETLSIEQNKLPAKVKESRKIVKTILDQGHLSPFLTSIK 670
Query: 617 PVYWSQYGALSLYPLPDLVILGDQLNA--YTIQNTDCIFINP-VFHNTVRNAF 666
PV W AL+LYP+P +I+ D L+A Y + C +NP +F N R +
Sbjct: 671 PVMWDLDHALTLYPIPSTLIVTD-LSAPPYEVTYNGCKVLNPGIFINNRRARY 722
>gi|345564565|gb|EGX47526.1| hypothetical protein AOL_s00083g335 [Arthrobotrys oligospora ATCC
24927]
Length = 806
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 115/517 (22%), Positives = 196/517 (37%), Gaps = 100/517 (19%)
Query: 232 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 291
+IN + I V+ AF P++ Y+ K+F+ K L D+ +K+++F RY +I R
Sbjct: 264 DINPRDYIH-VVDAFTQPKYKYNQSRKQFERAPKP-SLLPDATSKAQVFLTRYYLIHHRL 321
Query: 292 LRHSLFN--NINPNADSVKLDWVEYLMSLTNVNH-------KTVVLGMISQLKE-NRYFL 341
LR+ F P++ Y +T + H + G++S + + L
Sbjct: 322 LRNPSFQPPTFAPSSSMTSRGTKTYF-KITPIAHLLGRSGKPFFIFGLLSTSPDTGQLML 380
Query: 342 EDPTGIVQLDLSQTSYHP--GL-YTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRL 397
EDPTG +QLD + P G+ + V+V+G ++ D +G PP E + S
Sbjct: 381 EDPTGSIQLDTTHARPIPEDGVWFCPGSFVVVDGTFEADGRFTAYTIGQPPSERRETSAE 440
Query: 398 YFGNQNIWGGPSPVSLKSVNRMT-------KMEKNNENAMIVILSDVHLDNDKVRNNLCE 450
FG+ + G P+ + K N +++LS+VHLD K L +
Sbjct: 441 VFGHMDFLGINMPLEFSAGGGGGRGLRLAEKRLANEGKGKVIVLSEVHLDLPKTHEALTK 500
Query: 451 FI---TSEFQG---------------FVPNSTMATNPCRVQYCSQEILVVREELLSKMCR 492
SE G FV N N + + V + +
Sbjct: 501 LFEKWESEANGEDEVEVPAVVIMCGRFVSNGFGVGNGSLGYKEALDTFAVTISAFNTLLT 560
Query: 493 NCI--KFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGF 550
I P +GD ++P+ V + K+ ++ G
Sbjct: 561 KTIFVLVPSDGDPWGAAFTGGASG-----VLPRKSVPDVFSGKLKRVFTVANSANKKDGG 615
Query: 551 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF---------------------- 588
+NPCRV Y ++EI+V R++L ++ RN ++F
Sbjct: 616 GGRVVFGSNPCRVGYFTREIVVFRDDLGARFARNAVRFKALSSDDATDGPANKEKGAEGH 675
Query: 589 ----------------------------PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYW 620
P+ +++ V+T++ Q L P+N+ PV W
Sbjct: 676 EMDVDGLTGTVPRTQQEEDETTPVQSGVPDSVKMARKLVKTILDQSYLSPYPVNIRPVLW 735
Query: 621 SQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINP 656
AL+L+PLP+ +IL D +T+ C +NP
Sbjct: 736 DYTHALTLFPLPNYLILADSSTPPFTVTYEGCHVVNP 772
>gi|213406189|ref|XP_002173866.1| DNA polymerase epsilon subunit B [Schizosaccharomyces japonicus
yFS275]
gi|212001913|gb|EEB07573.1| DNA polymerase epsilon subunit B [Schizosaccharomyces japonicus
yFS275]
Length = 604
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 96/457 (21%), Positives = 189/457 (41%), Gaps = 65/457 (14%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
F VI AF +P ++Y + F+ KK L +++ + +++ R +I+ R ++ F +
Sbjct: 145 FKVIDAFKMPYYEYQSSRRFFERSTKKLSLLPQAESFTNMYQRRLQVIQHRISQNDAFQS 204
Query: 300 IN-----PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ 354
+ N + + L+ + ++ G ++ + + +LED V+LD+SQ
Sbjct: 205 TSFHRTFSNGGQTSITPIRSLLGRAGSDF--LLFGQLNLRPDGKPWLEDLDSQVELDVSQ 262
Query: 355 TSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSL 413
++ G + C+VLV G + ++ V + PP E + + N + G +
Sbjct: 263 CAWGMGWFFPGCLVLVNGQFLENGKFLVFEVCHPPIEKRDATLRHQANLDTLG--LNLDT 320
Query: 414 KSVNRMTKMEKNNENAMIVILSDVHLDNDKV-----------RNNLCEF-ITSEFQGFVP 461
+ + + E+ +NA VI +D+HLD+ + NN+ E +T F G
Sbjct: 321 NQLAYIRRAEREFQNAYFVICADLHLDDRQTFIALEKMLGMYENNIDELPVTFIFCGSFY 380
Query: 462 NSTMATNPCRVQYCSQ--EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL 519
++ +QY E + E+ +C++C ++F+
Sbjct: 381 STAFHNTGTSLQYKEHFNEFATLLEK-FPGICKDC--------------------QLVFI 419
Query: 520 IVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLS 579
P S + +P + + + N+ +NP R+ + S+EI++ R+ +
Sbjct: 420 PGPNDPWTCNGISMLPQQPIPPYFVNRIRRVSKNAIFTSNPSRISFFSREIVIFRDNITG 479
Query: 580 KMCRNC--IKFPE-----------------EGDISKHFVRTLVSQGTLVSLPLNLCPVYW 620
+ RN ++ PE + + + V+TL+ Q L PV W
Sbjct: 480 RFQRNSFHVEKPERPTTSDKREDASSLEVHQTQLKRKLVKTLLDQAHLSPFLHWKRPVLW 539
Query: 621 SQYGALSLYPLPD-LVILGDQLNAYTIQNTDCIFINP 656
ALSLYP+PD + I+ + A+ + C NP
Sbjct: 540 DYDYALSLYPVPDCMAIVDTSIPAFNVHYAGCTSFNP 576
>gi|147818232|emb|CAN73546.1| hypothetical protein VITISV_038180 [Vitis vinifera]
Length = 539
Score = 101 bits (251), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 87/350 (24%), Positives = 148/350 (42%), Gaps = 77/350 (22%)
Query: 235 SEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 294
S ++ AF + +F YDP K F + + D+ AKS L+R R+ ++ QR R
Sbjct: 87 STRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRLSRD 146
Query: 295 SLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDL 352
F+ + + E + SL K V+G+ISQL++ +FLED T V+++L
Sbjct: 147 QHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDGHFFLEDLTASVEINL 206
Query: 353 SQT-------------SYHPGLY------------------------------------- 362
S + GL+
Sbjct: 207 SNAISFTQLTVFFSIYGWDIGLFALPEITRIGHFSECDELNPLLKLVLMLLIRCMQYKIT 266
Query: 363 ----TENCIVLVEGHYK-DQILHVDALGFPPPE------ASKNSRLYFGNQNIWG----- 406
+EN I++ EG D I V GFPP E AS + +FG + G
Sbjct: 267 TGFFSENTIIVAEGEMXLDGIFQVSTCGFPPLEDRDESLASLSGLDFFGGEKTMGKLATV 326
Query: 407 --GPSPVSLKSVNRMT----KMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFV 460
G V + +M +++++++ I D R L ++T EF+ ++
Sbjct: 327 LDGYENVEFGKLGQMIASHPRLKEHSQFLFIPGPDDAGPSTVLPRCALPNYLTEEFKKYI 386
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---EEGDISKHV 507
PN+ ++NPCR+++ +QEI++ R++LL +M R+C+ P E D +H+
Sbjct: 387 PNAIFSSNPCRIKFYTQEIVLFRQDLLYRMRRSCLVPPSPEETSDPFEHI 436
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 44/61 (72%)
Query: 538 ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKH 597
ALP ++T EF+ ++PN+ ++NPCR+++ +QEI++ R++LL +M R+C+ P + S
Sbjct: 373 ALPNYLTEEFKKYIPNAIFSSNPCRIKFYTQEIVLFRQDLLYRMRRSCLVPPSPEETSDP 432
Query: 598 F 598
F
Sbjct: 433 F 433
Score = 43.9 bits (102), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 49/105 (46%), Gaps = 2/105 (1%)
Query: 29 SEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 88
S ++ AF + +F YDP K F + + D+ AKS L+R R+ ++ QR R
Sbjct: 87 STRSALRIVDAFLMSKFCYDPIKKIFYENTGRLAIHGDASAKSALYRNRFLLLFQRLSRD 146
Query: 89 SLFNNINPNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
F+ + + E + SL K V+G+ISQL++
Sbjct: 147 QHFSKPAFDTEMSHFGSCEISPIQSLIGQTGKRWVMGVISQLEDG 191
>gi|452820225|gb|EME27270.1| DNA polymerase epsilon subunit 2 [Galdieria sulphuraria]
Length = 522
Score = 99.8 bits (247), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 87/342 (25%), Positives = 163/342 (47%), Gaps = 51/342 (14%)
Query: 327 VLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGF 386
+ G++ + + N+YF+ED TG +QLDLS+ +YT+ CIVLV G + Q+ V +
Sbjct: 186 LFGILGKFEGNKYFIEDETGYIQLDLSEACSSDRIYTQGCIVLVRGEWNGQLFRVTNIEM 245
Query: 387 PPPEASKNSRLYFGNQNIWGGPSPVSL-KSVNRMTKMEKNNENAMIVILSDVHLDNDKVR 445
PP +AS ++ + P +L + ++ + + +N ++VI+S++ LD+D V
Sbjct: 246 PPLDASLSNIM-----------EPKALCQVIDSEVDVHEKQQNHIMVIISEIWLDHDSVF 294
Query: 446 NNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 505
N L + + S A + C + +V+ LS P+E +
Sbjct: 295 NKLEKLFS---------SLQADDVC------PDTVVLMGNFLSPSLN-----PDEDHL-- 332
Query: 506 HVSKNNGEKDIIFLI---VPK-----IYVEG----TVTSKVLSPALPKFITSEFQGFVPN 553
+ NNG + + L+ +P + + G + + + P + + + + +
Sbjct: 333 -LHFNNGFQQLASLLHEYIPNEQCQVVIIPGPNDPGIKNILPRPPILESLLNPLRHLYKC 391
Query: 554 STMATNPCRVQYCSQEILVVREELLSKMCRNCI-KFPEE-GDISKHFVRTLVSQGTLVSL 611
ST A+NP R+ + I+ R+ + K+ + I P + + V+TL+ QG L L
Sbjct: 392 STAASNPVRIVCQNSNIIFYRDNIEKKLVPHSIFLLPNNLNRLREMIVQTLLDQGHLCPL 451
Query: 612 PLNLCPVYWSQYGALSLYPLPDLVILGDQLNA--YTIQNTDC 651
P+++ PV+W+ +L L+P P ++LG L + YT T C
Sbjct: 452 PMDMQPVFWNHEQSLWLFPPPQFLVLGCGLESFQYTYGQTKC 493
>gi|148704672|gb|EDL36619.1| polymerase (DNA directed), epsilon 2 (p59 subunit), isoform CRA_a
[Mus musculus]
Length = 217
Score = 99.8 bits (247), Expect = 5e-18, Method: Composition-based stats.
Identities = 54/136 (39%), Positives = 81/136 (59%), Gaps = 10/136 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++L+ E
Sbjct: 82 ECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLE 141
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +++ + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 142 RYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 201
Query: 337 NRYFLEDPTGIVQLDL 352
++FLEDPTG VQLDL
Sbjct: 202 GKFFLEDPTGTVQLDL 217
Score = 75.1 bits (183), Expect = 1e-10, Method: Composition-based stats.
Identities = 43/127 (33%), Positives = 70/127 (55%), Gaps = 10/127 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 75 VVEAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARD 134
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+ ERY I+ QRT RH LF +++ + +L +E L+ T+ +VLG
Sbjct: 135 KAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLG 194
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 195 MITQLKE 201
>gi|50288713|ref|XP_446786.1| hypothetical protein [Candida glabrata CBS 138]
gi|74609957|sp|Q6FSK8.1|DPB2_CANGA RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|49526094|emb|CAG59713.1| unnamed protein product [Candida glabrata]
Length = 719
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 126/532 (23%), Positives = 209/532 (39%), Gaps = 119/532 (22%)
Query: 216 NNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA---- 271
N I+NW F +I+ D +F Y+P ++ K +L +
Sbjct: 188 NRILNW---------------RDYFRIINTTDQKKFSYNPVKRQIFYQPPKDQLKSVLKI 232
Query: 272 -DSDAKSKLFRERYNIIRQRTLRHSLF----NNINPNADSVKL---------DWVEYLMS 317
++ AK+ LFR RY + R R LR+ F + NP + ++L D +S
Sbjct: 233 PNAQAKTDLFRTRYFLTRDRLLRNESFQSSHDTFNPLSSMIQLKNNINNNNQDDTPTGLS 292
Query: 318 LTNV-------NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVL 369
+T + ++LG++ + ++ LED +G + +D+SQT PGL Y IVL
Sbjct: 293 ITQIKNLLGRDGQNFLILGVLKMNPKGQWSLEDASGSIDIDISQTLPSPGLFYIPGAIVL 352
Query: 370 VEGHYK--DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK------ 421
EG Y V ++ FPP E + + GN ++ G + R+
Sbjct: 353 AEGIYYTVGHTFAVTSMTFPPGERRDKTLDHIGNLDLLGIHGTEKSSYIPRLDNEIKIRL 412
Query: 422 --MEKNNENAMIVIL-SDVHLDNDKVRNNLCEFITSEFQG----FVPNSTMATNPCRVQY 474
+E++ + V+L D+ LD+ V + L + T Q V + ++ P
Sbjct: 413 HLLEQDLTHQKFVLLGGDLFLDDQHVMDGLKKVFTKLDQEAPTVIVLFGSFSSFPVHAAM 472
Query: 475 CSQEILVVRE---------ELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIY 525
S+ I E E+LS+ N I HV G D ++ + +
Sbjct: 473 SSKNISSTTEYKNNFDSLAEMLSQF-ENIINH-------THVVLIPGPHD-PWVSLCSLG 523
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE---------- 575
G++ ++P + N T A+NP R+ Y SQEI++ R+
Sbjct: 524 ANGSLPQS----SIPTHFSKRMNKICKNITWASNPTRIAYLSQEIVLFRDNFLELCKRHQ 579
Query: 576 ---------------ELLSKMCRNCI---------------KFPEEGDISKHFVRTLVSQ 605
EL +M N I + P + S+ V+TL+ Q
Sbjct: 580 ILFPVVESKRAEDLAELEEQMANNSIDDTTILVDRIISEKQQLPAKVLESRKVVKTLLDQ 639
Query: 606 GTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINP 656
G L ++ P+ W L+LYP+P +IL D + AY + C INP
Sbjct: 640 GHLSPFVDSIRPISWDMDHTLTLYPIPSTLILADMSSAAYDLTYNGCKTINP 691
>gi|254571769|ref|XP_002492994.1| Second largest subunit of DNA polymerase II (DNA polymerase
epsilon) [Komagataella pastoris GS115]
gi|238032792|emb|CAY70815.1| Second largest subunit of DNA polymerase II (DNA polymerase
epsilon) [Komagataella pastoris GS115]
gi|328352992|emb|CCA39390.1| DNA polymerase epsilon subunit 2 [Komagataella pastoris CBS 7435]
Length = 630
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 102/444 (22%), Positives = 185/444 (41%), Gaps = 84/444 (18%)
Query: 271 ADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGM 330
A + + ++F RYN++ +R +R F P +K L + ++ G+
Sbjct: 185 AQTSSAVEMFLNRYNLVYERFIRDEEFK---PTVTRIK-------NLLGRNGSRFLIFGL 234
Query: 331 ISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPP 389
IS L+D + ++LD+S+ ++ G + C+V+ +G Y K + H ++ PP
Sbjct: 235 ISYNNSGNLQLQDDSDAIELDISRCTFSMGYFVPGCLVVCDGIYSKKNVFHCLSIAHPPA 294
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNR---------MTKMEKNNENAMIVILSDVHLD 440
E + S GN ++ G S + K + + MT ++ + + ++++ D+ LD
Sbjct: 295 EKRETSMEIIGNLDLLGIHS--TSKQITKIDPDLKLKLMTTEKQLDSHKILILGGDIFLD 352
Query: 441 NDKVRNNLCEFITSEFQGFVPNST----------------MATNPCRVQYCSQEILVVRE 484
+ V + L + Q FV N ++ +P + S
Sbjct: 353 DLNVLDALKKLFAKLTQTFVDNQVDLPLSIVLNGPFTKYPLSCSPINFSFSSIASYKAGF 412
Query: 485 ELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL-----IVPKIYVEGTVTSKVLSPAL 539
+ L+ + KFPE I KH + IIF+ + P I GT + P
Sbjct: 413 DSLASILE---KFPE---ICKHTT-------IIFVPHDNDLWPSIVHRGTSSLWPHQPIS 459
Query: 540 PKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE--------- 590
FIT + + +A+NP ++ Y SQEI++VR+++ ++ RN I P
Sbjct: 460 NTFIT-KLTRIIKTCLVASNPTKLNYLSQEIILVRDDINARFKRNQITKPAPVEIEIDIE 518
Query: 591 -----------------EGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
E +++ V+T++ QG L ++ P+ W L LYP P+
Sbjct: 519 PTQVSTEDVVSDKSISPEIRLARKIVKTVLDQGHLSPFTTDIRPILWDYDPYLHLYPSPN 578
Query: 634 LVILGD-QLNAYTIQNTDCIFINP 656
L++L D + I C INP
Sbjct: 579 LLVLCDPSAPRFDITYMGCHTINP 602
>gi|410075784|ref|XP_003955474.1| hypothetical protein KAFR_0B00390 [Kazachstania africana CBS 2517]
gi|372462057|emb|CCF56339.1| hypothetical protein KAFR_0B00390 [Kazachstania africana CBS 2517]
Length = 693
Score = 98.6 bits (244), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 113/487 (23%), Positives = 201/487 (41%), Gaps = 101/487 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF-- 297
F VI+A +F YDP + + + + + ++F RYNI++ R +R+ +F
Sbjct: 175 FKVINAQSQQKFSYDPIKMQLRFMPQNKANLPSIKDNVEMFSTRYNIVKDRVMRNEMFQG 234
Query: 298 -NNINPNADSVKL--------DWVEYLMSLTNVNH-------KTVVLGMISQLKENRYFL 341
+ NP + +KL + + MS+T + + ++LG++ + + L
Sbjct: 235 NDTFNPLSSMMKLKEDLNNESNSMSSYMSITQIKNLLGRDGKNFLLLGLLRKNNRGSWAL 294
Query: 342 EDPTGIVQLDLSQTSYHPGLYT-ENCIVLVEGHY--KDQILHVDALGFPPPEASKNSRLY 398
EDP+G +++D+SQT GLY E CIVLVEG Y H ++ PP E + +
Sbjct: 295 EDPSGTIEIDISQTIPTNGLYYFEGCIVLVEGIYFSVGNRFHASSMTHPPGERREATLDK 354
Query: 399 FGNQNIWG--GPSPVSLKSVNRMTKMEKN------------NENAMIVILSDVHLDNDKV 444
G+ ++ G G S + N M K++ N ++ +++ D+ LD
Sbjct: 355 IGHLDLLGIHGSS-----NANYMAKLDNNLKIRLHYLEKELEDHRFVILGGDLFLD---- 405
Query: 445 RNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILV-VREELLSKMCRNCIKFPEEGD- 502
+FIT E P + + V V + SK + ++ D
Sbjct: 406 -----KFITLEALRKTFKKLNDDPPTVIVFQGSFTSVPVHTSVTSKSISSSTQYKNNFDT 460
Query: 503 ISKHVSK-NNGEKDIIFLIVPKIYVE-GTVTSKVLSPALPK-----FITSEFQGFVPNST 555
++ +S+ N + D I + +P G++ S S +LP+ F T
Sbjct: 461 LAALLSEFENIKNDSILIFIPGANDPWGSMHSLGASGSLPQKPIPSFFTQRISRVCKRVI 520
Query: 556 MATNPCRVQYCSQEILVVREELLSKMCRNCIKF--------------------------- 588
+NP R+ Y SQEI+++R+++ S+ R+ + F
Sbjct: 521 WGSNPMRIAYLSQEIVIMRDDMASRFKRHSVIFPMLEESKEEQLLQLQEEIENISIDNTA 580
Query: 589 ----------------PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
P E + S+ +V+T++ QG L + P+ W LSLYP+P
Sbjct: 581 DESVIINQLVKDKNQLPTELEQSRKYVKTILDQGHLSPFITTIRPINWELDHTLSLYPIP 640
Query: 633 DLVILGD 639
+I D
Sbjct: 641 STLIFCD 647
>gi|403216556|emb|CCK71053.1| hypothetical protein KNAG_0F03890 [Kazachstania naganishii CBS
8797]
Length = 580
Score = 95.1 bits (235), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 102/429 (23%), Positives = 184/429 (42%), Gaps = 69/429 (16%)
Query: 276 KSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLK 335
K +F RY I R R+LR N + ++ E + + VVLG++
Sbjct: 145 KQDMFSTRYYITRDRSLR-------NAASLGAPFEFTEIKNFMGKDSQNFVVLGLLIMNN 197
Query: 336 ENRYFLEDPTGIVQLDLSQTSYHP-GLYTENCIVLVEGHY--KDQILHVDALGFPPPEAS 392
+ ++ LEDP+G +++D+SQ P Y CIV+ EG Y Q HV ++ PP E
Sbjct: 198 KGKWALEDPSGSIEIDISQCVPTPLSYYMPGCIVIAEGIYFTVGQTFHVTSMTHPPGEKR 257
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSD-VHLDNDKVRNNLCEF 451
+S+L GN ++ + + K + +EN +I++ + + LD V + L +
Sbjct: 258 VDSQLALGNLDLVRATHLDKQRLIVLHEKEIELDENEIILLGGESMFLDQQNVHDALRKL 317
Query: 452 ITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELL--SKMCRNCI--------KFPEEG 501
++ + P + + C + S+ ++ + + + R +FPE
Sbjct: 318 F-AKLEELPPYAII----CFGSFFSKPVIPTSSNAIPSTTLYRKGFESLAVILEEFPELV 372
Query: 502 DISKHV---SKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTM-A 557
+K V N+ K + L ++G + ++P LP +T + + + + A
Sbjct: 373 SSTKFVFVPGNNDPWKSMSTL-----GMDGVLP---MAP-LPSLVTHKLERVLKQDIVWA 423
Query: 558 TNPCRVQYCSQEILVVREEL-----------------------------LSKMCRNCIKF 588
TNPCR+ Y SQEI +VR++L + ++ +N +
Sbjct: 424 TNPCRIMYYSQEIFLVRDDLQQRLKVHDVSFPAIASSKDPHSGEEEGQYIDQLVKNPDQL 483
Query: 589 PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YTIQ 647
P E + ++ V+T++ QG + ++ PV W Q L L+P P +IL D +
Sbjct: 484 PRELEQARKLVKTVLDQGHISPFVESIRPVDWEQDHTLMLFPAPTTLILCDTTAPKLNLT 543
Query: 648 NTDCIFINP 656
C INP
Sbjct: 544 YNGCKAINP 552
>gi|365990674|ref|XP_003672166.1| hypothetical protein NDAI_0J00310 [Naumovozyma dairenensis CBS 421]
gi|343770941|emb|CCD26923.1| hypothetical protein NDAI_0J00310 [Naumovozyma dairenensis CBS 421]
Length = 704
Score = 93.6 bits (231), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 116/528 (21%), Positives = 214/528 (40%), Gaps = 107/528 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLV-DKKRKLCADSD----------AKSKLFRERYNIIR 288
F VI+A D +F Y+ +F+ +KK+K +S+ + LF+ RY + +
Sbjct: 171 FKVINAHDQQRFIYNSMKMQFQFQPNKKKKQGINSNLLHLKLPNILSNISLFQTRYYLNK 230
Query: 289 QRTLRHSLFNN---INPNADSVKL----------------DWVEYLMSLTNVNH------ 323
+R +R+ F N NP + + + + + MS+T + +
Sbjct: 231 ERIMRNENFQNTDSFNPLSSMIHMKNDLTTTTTTTTTNQTENISSYMSITPIKNLLGRDG 290
Query: 324 -KTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHY--KDQIL 379
++LG++ + + + +EDP+ +++++SQT+ PG+ Y CIVL EG Y
Sbjct: 291 KNFLILGLLKKNSKGNWSIEDPSSSIEIEISQTTPTPGVYYVPGCIVLAEGIYFSVGNKF 350
Query: 380 HVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMI 431
HV ++ PP E + + GN ++ G + + + R+ +EK E+
Sbjct: 351 HVISMTLPPAERREITLDAIGNLDLLGMHNISNENYIARLDSDLKIRLHFLEKELEDHRF 410
Query: 432 VIL-SDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQY-CSQEILVVREELLSK 489
+IL D+ LD E T E V + P + + S + + + S+
Sbjct: 411 IILGGDLFLD---------ELTTLEALRKVFDKINDDPPTIIIFQGSFTSIPIHASMTSR 461
Query: 490 MCRNCIKFPEEGDISKHVSKN--NGEKDIIFLIVPKI------YVEGTVTSKVLSPALPK 541
+ ++ D+ ++ N N + + +P + V T + +P
Sbjct: 462 NISSTTQYKNNFDLLANLLSNYENIINECTLIFIPGVNDPWGSMVSLGATGPIPQNKIPS 521
Query: 542 FITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP------------ 589
+ + N +NP R+ Y SQEI+++R+++ + RN I FP
Sbjct: 522 YFINRMNRICKNIIWGSNPTRILYLSQEIVIMRDDMADRFKRNSITFPMQEEMKQQHILE 581
Query: 590 ---------------------EEGDI------SKHFVRTLVSQGTLVSLPLNLCPVYWSQ 622
EG + S+ V+T++ QG L N+ PV W
Sbjct: 582 LQEQLNKLSVDDTISINQLINNEGQLNSKVKESRRLVKTILDQGHLSPFITNIRPVIWDL 641
Query: 623 YGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINPVFHNTVRNAFEVE 669
+L+LYP+P +I+ D + + + C INP R A VE
Sbjct: 642 EHSLTLYPIPSTMIICDLSSPQFDLTYNGCKSINPGRFMHKRRARYVE 689
>gi|212528786|ref|XP_002144550.1| DNA polymerase epsilon subunit B, putative [Talaromyces marneffei
ATCC 18224]
gi|210073948|gb|EEA28035.1| DNA polymerase epsilon subunit B, putative [Talaromyces marneffei
ATCC 18224]
Length = 756
Score = 92.4 bits (228), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 118/536 (22%), Positives = 190/536 (35%), Gaps = 125/536 (23%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN-- 299
V+ A+D P+ Y+PD K F+ K D + +R+R+N+I QR LR+ F
Sbjct: 193 VVDAYDQPRLTYNPDKKHFETSINKPSFFPDPSHQITFYRDRFNLIYQRLLRNESFQTSS 252
Query: 300 -INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYH 358
+N N + K+ + L+ H + LG++S L D TG + LDLS+T
Sbjct: 253 LLNSNRQTYKITPIANLLGRGGSQH--MCLGLLSVSPAGEMSLTDLTGTIMLDLSETVPI 310
Query: 359 P----GLYTENCIVLVEGHY-KDQILHVDALG-------------------FPPPEASK- 393
P + +VLVEG Y +++++ LG PP E +
Sbjct: 311 PRGNGAWFCPGMMVLVEGIYEEEEVVKGSVLGGNSGIGGAIGGKLLGITIAGPPSEKREV 370
Query: 394 ----NSRLYFGNQNIWGGPSPVSLKSVN-------RMTKME------------KNNENAM 430
NS G+ GG V V RM K E + N
Sbjct: 371 TLGMNSVDSKGDIGTSGGFGWVDFLGVGSERAQGARMRKFEHRSLRQVRGADGQRNGRRN 430
Query: 431 IVILSDVHLDNDKVRNNLCE-----------------FITSEFQGFVP-NSTMATNPCRV 472
IVIL +VHLDN + L + F G V + N
Sbjct: 431 IVILGEVHLDNSRTLEALRSVFSIYSELPFEELPLAFLMIGNFIGKVGFGQSSVGNSIEY 490
Query: 473 QYCSQEILVVREELLSKMCRNCIKF-PEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVT 531
+ C + V + + + F P + D I VP+++ +
Sbjct: 491 KECFDSLASVLSDFPALLSHTTFIFVPGDNDPWASTFTAGASSAIPRKAVPELFT--SRV 548
Query: 532 SKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS--QEILVVREELLSKMCRNCIKFP 589
+ + A S + + +NP R+ EI+V R+++ ++ R I F
Sbjct: 549 KRAFASANSDSGDSASKSTPGEAIWTSNPSRISLFGPVHEIVVYRDDISGRLRRGSIHFT 608
Query: 590 EEGD------------------------------------------------ISKHFVRT 601
GD ++ +T
Sbjct: 609 NTGDNDSEEPQVQGDATEENDDNMIIDDDNDKDSNEAGKNNSAIKQPSPSYLAAQKISKT 668
Query: 602 LVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
++ QGTL P+ PV W ++ LYPLP ++L D ++ A++I C +NP
Sbjct: 669 ILDQGTLSPFPITTKPVLWDYASSIQLYPLPTALVLADSEVAAFSISYEGCNVLNP 724
Score = 48.5 bits (114), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 47/94 (50%), Gaps = 5/94 (5%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN-- 93
V+ A+D P+ Y+PD K F+ K D + +R+R+N+I QR LR+ F
Sbjct: 193 VVDAYDQPRLTYNPDKKHFETSINKPSFFPDPSHQITFYRDRFNLIYQRLLRNESFQTSS 252
Query: 94 -INPNADSVKLDWVEYLMSLTNVNHKTVVLGMIS 126
+N N + K+ + L+ H + LG++S
Sbjct: 253 LLNSNRQTYKITPIANLLGRGGSQH--MCLGLLS 284
>gi|50308319|ref|XP_454161.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74606040|sp|Q6CPH8.1|DPB2_KLULA RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|49643296|emb|CAG99248.1| KLLA0E04775p [Kluyveromyces lactis]
Length = 710
Score = 92.4 bits (228), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 116/511 (22%), Positives = 197/511 (38%), Gaps = 107/511 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKL-----------CADSDAKSKLFRERYNIIR 288
F VI AF+ F YD +++ V + +++ + ++K LF RY+II+
Sbjct: 185 FKVIDAFNQQTFTYDHTKRQYIYVPRPKEVEKNMLSIAKLKLPNVESKVSLFTTRYHIIK 244
Query: 289 QRTLRHSLFNN---INP------------NADSVKLDWVEYLMSLTNVNH-------KTV 326
+ LR+ F N NP +D L+ Y M +T + + +
Sbjct: 245 DKVLRNEKFQNNDIFNPLSSIIEMGKHMNESDVSPLNSASY-MKITQIKNLLGHDGKNFL 303
Query: 327 VLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHY--KDQILHVDA 383
+LG++ Q + + LEDP+G ++L L Q G Y CIVLVEG Y V +
Sbjct: 304 LLGLLDQNSKGNWSLEDPSGSIELHLQQAIPTKGTYYVPGCIVLVEGIYYTASNTFVVSS 363
Query: 384 LGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKN-NENAMIVIL 434
+ PP E +++ GN ++ G +P + V R+ K +E+ ++N +++
Sbjct: 364 ITHPPGEKREDTIEAIGNLDLLGAYNPSNENYVARLDKDLKIRLHYLEQELSDNKFVILG 423
Query: 435 SDVHLDN----DKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
D++LD D ++ + T V N + + P V L +K
Sbjct: 424 GDIYLDEMTTMDGLKKTFDKLTTDPPVAIVFNGSFVSVP------------VHPSLNAKN 471
Query: 491 CRNCIKFPEEGDISKHVSKNN----GEKDIIFLIVPK----IYVEGTVTSKVLSPALPKF 542
+ + D + N + +IF+ P V T+ +P
Sbjct: 472 VSATVSYKNNFDALATLLSNYENLINDTHMIFIPGPNDPWTSMVGLGTTTMWPQKIIPSS 531
Query: 543 ITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--------EEGDI 594
T + +NP R+ Y SQEI++ R++L ++ R I FP E ++
Sbjct: 532 FTQKMSRICRKVHWGSNPLRIAYLSQEIVLTRDDLANRFKRYNIVFPTVEEEKYLENAEL 591
Query: 595 ----------------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGAL 626
S+ V+TL+ Q L + P W L
Sbjct: 592 QEQYSRNPDVSVGQLIAFKNNLPVSVLESRKLVKTLLDQQHLSPFSSRIRPTVWDLDFTL 651
Query: 627 SLYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
L PLP ++L D A+ + C INP
Sbjct: 652 QLSPLPSSIMLCDTSAPAFDVTYNGCKTINP 682
>gi|149051333|gb|EDM03506.1| rCG62310, isoform CRA_a [Rattus norvegicus]
gi|149051334|gb|EDM03507.1| rCG62310, isoform CRA_a [Rattus norvegicus]
Length = 105
Score = 91.3 bits (225), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/89 (46%), Positives = 60/89 (67%), Gaps = 1/89 (1%)
Query: 581 MCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
MCRNC++FP DI HFV+T++SQG L LPL + PVYW+ L +YP+PDL+++ D
Sbjct: 1 MCRNCVRFPSSSLDIPTHFVKTVLSQGHLAPLPLYVSPVYWAYDYTLRVYPVPDLLVIAD 60
Query: 640 QLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
+ + +T+ NT+C+ INP AF+V
Sbjct: 61 KYDPFTVTNTECLCINPGSFPRSGFAFKV 89
>gi|296423465|ref|XP_002841274.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637511|emb|CAZ85465.1| unnamed protein product [Tuber melanosporum]
Length = 663
Score = 90.5 bits (223), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 117/461 (25%), Positives = 194/461 (42%), Gaps = 61/461 (13%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN-NI 300
VI AF P+F Y+P K+F+ K L K++LFR RYN++ QR LR F
Sbjct: 190 VIDAFSQPKFAYNPLKKQFEKAPKP-SLLPPPQTKTQLFRTRYNLLHQRLLRTETFQLPT 248
Query: 301 NPNADSVKLDWVEYLMSLTNVNHKT----VVLGMISQLKENRYFLEDPTGIVQLDLSQTS 356
A S V L ++N+ ++ ++ GM+ L DP+G + LDLS +
Sbjct: 249 FSAASSSAAKAVNRLTPISNLLGRSGQSFLLFGMLGVSPSGLLILLDPSGEIVLDLSIAT 308
Query: 357 YHP---GLYTENCIVLVEGHYKD-QILHVDALGFPPPEASKNSRLYFGNQNIWGGPSP-- 410
P +T C +++G +++ V +G P E S FG+ + G
Sbjct: 309 AIPEDGSWFTPGCFCILDGAFEETGKFTVFTVGQPCAERRATSVEVFGHVDFLGNGVTLD 368
Query: 411 VSLKSVNR----MTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVP-NSTM 465
+S+ S + + K EK+ E+ + + +V LD L + + SE++ P +
Sbjct: 369 MSVSSGGQQGRILRKAEKSLEHVKYLFIGEVELDGKGTLRALRK-VFSEYETEPPLVVVL 427
Query: 466 ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP--- 522
N C V S V +E ++ FP S F+ VP
Sbjct: 428 MGNFCSVAMGSSGGSVGYKEYFDQLASLLQDFPTLTSSS------------TFIFVPGDN 475
Query: 523 ----KIYVEGTVTSKVLSPALPKFITSEF-----QGFVPNSTM-ATNPCRVQYCSQEILV 572
+ G T+ P +P+ T+ Q PNS + A+NPCR+ Y +QEI++
Sbjct: 476 DPWASTFSGGASTTLPRKP-IPEIFTTRIKRVFTQSRGPNSAIWASNPCRIGYFTQEIVM 534
Query: 573 VREELLSKMCRNCIKF-----PEEGDISKHFVRT-------LVSQGTLVSLPLNLCPV-- 618
R+++ S+ RN I F P E +S+ + ++ T VS P + P+
Sbjct: 535 CRDDIFSRFQRNAINFKKSDHPMEDALSQPEATGDEGEEIDIKTKNTKVSYPHSPSPLDR 594
Query: 619 YWSQYG---ALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
++ G A + Y + LV+ ++ I C +NP
Sbjct: 595 FYGIIGILLAFTRYLVLQLVLADPRMQPSAITYESCHVMNP 635
Score = 45.8 bits (107), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 32/57 (56%), Gaps = 1/57 (1%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
VI AF P+F Y+P K+F+ K L K++LFR RYN++ QR LR F
Sbjct: 190 VIDAFSQPKFAYNPLKKQFEKAPKP-SLLPPPQTKTQLFRTRYNLLHQRLLRTETFQ 245
>gi|402578024|gb|EJW71979.1| hypothetical protein WUBG_17114, partial [Wuchereria bancrofti]
Length = 154
Score = 90.5 bits (223), Expect = 3e-15, Method: Composition-based stats.
Identities = 47/148 (31%), Positives = 85/148 (57%), Gaps = 5/148 (3%)
Query: 330 MISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPP 389
M++Q Y +ED TG +++DL + ++H GL+T+ CI+++EG + V+A+G P
Sbjct: 1 MLTQRNPGVYEIEDLTGSIEVDLKEATFHKGLFTDGCIMMLEGRSVGGLFRVNAVGLAPV 60
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLC 449
E++K +R YFG N +GG V+ S R+ + + N+ +++SDV LD+ ++ + +
Sbjct: 61 ESAKVTRNYFGVTNWFGGEGTVACGSQIRLRTLCERNDRTRFILMSDVWLDDSRILSAIN 120
Query: 450 EFITSEFQGFVPNSTMATNPCRVQYCSQ 477
E I + F + +A C +CSQ
Sbjct: 121 ELIFA----FTDSQLLAFIICG-NFCSQ 143
>gi|218201273|gb|EEC83700.1| hypothetical protein OsI_29519 [Oryza sativa Indica Group]
Length = 293
Score = 87.4 bits (215), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 86/357 (24%), Positives = 130/357 (36%), Gaps = 110/357 (30%)
Query: 312 VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ----TSY-------HPG 360
+ + SL + ++G+ISQL+E +++LED TG V +DLS TS+ G
Sbjct: 9 ITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLSNANSITSFLSTEHKITSG 68
Query: 361 LYTENCIVLVEGH-YKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRM 419
+ EN ++L EG + I V+ GFPP E + S + +GG ++ + R+
Sbjct: 69 FFVENTVILAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGG-GVIAAEETVRL 127
Query: 420 TKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEI 479
+ +EK N M VILSDV LD +SEF E+
Sbjct: 128 STLEKKAMNDMFVILSDVWLD------------SSEFGKL-----------------GEM 158
Query: 480 LVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPAL 539
+ R L I PE+ SK + + L
Sbjct: 159 IAARSRLKEHSRFLFIPGPEDAGPSKALPRCT---------------------------L 191
Query: 540 PKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFV 599
PK++T E Q +PN+ V
Sbjct: 192 PKYLTEELQKHIPNAIF-----------------------------------------LV 210
Query: 600 RTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
T+ Q L LPL + P+ W+ L LYP P ++LGD+ + NP
Sbjct: 211 ATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVLGDKSEQKAFKYAGITCFNP 267
>gi|363750205|ref|XP_003645320.1| hypothetical protein Ecym_2806 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888953|gb|AET38503.1| Hypothetical protein Ecym_2806 [Eremothecium cymbalariae
DBVPG#7215]
Length = 713
Score = 86.3 bits (212), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 126/538 (23%), Positives = 203/538 (37%), Gaps = 106/538 (19%)
Query: 225 SSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL----- 279
+S E+N + F +I++F +F YD K+F+ V K S SKL
Sbjct: 174 ASAASNDELNWSD-YFKIINSFSQQRFTYDAVKKRFRFVRPKEMQNLKSSFISKLKIPTV 232
Query: 280 ------FRERYNIIRQRTLRHSLFNN---INPNADSVKLD----------WVEYLMSLTN 320
F RY+++++R LR+ F N NP + +L+ MS+T
Sbjct: 233 ESGIPLFSTRYHLVKERVLRNENFQNGDTYNPLSSMAQLENQLKGSNLNLGSSVYMSITQ 292
Query: 321 VNH-------KTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEG 372
+ + ++LG++ + + + LEDP+G V LD+S+ G Y CI+L EG
Sbjct: 293 IKNLLGRDGKNFLLLGVLRKNSKGVWLLEDPSGQVDLDISEAIPTKGSYYVPGCILLAEG 352
Query: 373 HYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEK 424
Y + HV ++ PP E + + GN ++ G S + R+ + +EK
Sbjct: 353 IYSRNMFHVSSITHPPGERREVTLDAIGNLDMLGIHELSSEHYIARLDRDLKIRLHYLEK 412
Query: 425 NNENAMIVIL-SDVHLDNDKVRNNLCEFITSEFQGF--------VPNSTMATNPCRVQYC 475
+ V+L ++ LD N + +T F+ V N + + P
Sbjct: 413 ELTDHRFVLLGGNIFLD----EVNTFDALTKVFKVLNADPPTVIVLNGSFNSTPLHPSMT 468
Query: 476 SQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKV- 534
S+ I S F + + + E IF+ P VTS V
Sbjct: 469 SKNI--------SSTTTYKNNFDALASLLSNYERLINECTFIFIPGPNDPWSSMVTSGVP 520
Query: 535 -LSPA--LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP-- 589
L P +P S + + P RV Y SQEIL+ R+++ ++ RN + FP
Sbjct: 521 GLLPQKEIPINFVSRVNRICRHVFWGSTPTRVAYLSQEILLTRDDICTRFKRNNVIFPIT 580
Query: 590 -----------------EEGDI--------------------SKHFVRTLVSQGTLVSLP 612
E+ D S+ V+TL+ Q L
Sbjct: 581 EAEKMEQYLTLQKELQDEDHDPDLSISQLIKSRDQLPASVQESRKIVKTLLDQQHLSPFI 640
Query: 613 LNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINPVFHNTVRNAFEVE 669
+ P W L L P+P +++ D Y + C INP R A VE
Sbjct: 641 SQIRPTIWDLDHTLHLLPIPSTLVICDVTTCQYDVTYNGCKTINPGVFIHRRTAHYVE 698
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 55/121 (45%), Gaps = 15/121 (12%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL-----------FRERYNIIR 82
F +I++F +F YD K+F+ V K S SKL F RY++++
Sbjct: 188 FKIINSFSQQRFTYDAVKKRFRFVRPKEMQNLKSSFISKLKIPTVESGIPLFSTRYHLVK 247
Query: 83 QRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSG----LL 138
+R LR+ F N + + +E + +N+N + V I+Q+K + G LL
Sbjct: 248 ERVLRNENFQNGDTYNPLSSMAQLENQLKGSNLNLGSSVYMSITQIKNLLGRDGKNFLLL 307
Query: 139 G 139
G
Sbjct: 308 G 308
>gi|67900904|ref|XP_680708.1| hypothetical protein AN7439.2 [Aspergillus nidulans FGSC A4]
gi|40742829|gb|EAA62019.1| hypothetical protein AN7439.2 [Aspergillus nidulans FGSC A4]
gi|259483743|tpe|CBF79384.1| TPA: second largest subunit of DNA polymerase II (Eurofung)
[Aspergillus nidulans FGSC A4]
Length = 743
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 114/534 (21%), Positives = 201/534 (37%), Gaps = 122/534 (22%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
VI AFD P+ Y+ + K F++ K L + K+ LFR+RYN++ QR LR+ LF
Sbjct: 184 VIGAFDTPRLAYNAEKKNFEVTKIKPSLFPEPSHKTALFRDRYNLVHQRLLRNELFQVPL 243
Query: 298 -----------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
++ + KL V L+ + +H ++LG++S L D TG
Sbjct: 244 ASASMPTLQRSSSTFARSQCYKLTPVANLLGRSGTSH--LLLGLLSISPTGELSLTDLTG 301
Query: 347 IVQLDLSQTSYHP--GLY-TENCIVLVEGHYKDQI-LHVDALGF---------------- 386
+ LDLS P G + T VLV+G Y+++ + LG
Sbjct: 302 SIVLDLSHARLIPKGGAWLTPGMFVLVDGIYEEEENVRGSTLGGNSGIGGAIGGKFVGVT 361
Query: 387 --PPP----EASKNSRLYFGNQNI--WGGPSPVSLKSVN-------RMTKMEKN------ 425
PP E S ++ N++I GG V V RM +++
Sbjct: 362 ICGPPCERRETSLGMSIHGKNEDISSSGGFGWVDFTGVGSERAQGSRMRRIQTRCLHEAH 421
Query: 426 -----NENAMIVILSDVHLDNDKVRNNLCE------------------FITSEFQGFVPN 462
N IVI+ +V+LDN K + L + + + Q + N
Sbjct: 422 DGNQLNRRFKIVIMGEVNLDNMKTMDALRKVFSLYNDSAVQERPLLFVLVGNFVQKAIIN 481
Query: 463 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKF-PEEGDISKHVSKNNGEKDIIFLIV 521
+ C + +V + S + R+ F P + D I +
Sbjct: 482 GGGQGGSIEYKECFDMLALVLSDFPSLLQRSTFIFVPGDNDPWSSSFSAGASSTIPRYAI 541
Query: 522 PKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS--QEILVVREELLS 579
P ++ + + + A + ++ + TNP R+ +I ++R+++ S
Sbjct: 542 PNLFT--SRVKRAFASANSQMDRNQLSEPPGEAIWTTNPSRISLFGPVHDIAILRDDISS 599
Query: 580 KMCRNCIKFPEE-----GDIS------------------------------KHFVRTLVS 604
++ RN + GD+S + +++++
Sbjct: 600 RLRRNAVTVGHNTADMGGDLSSAVEPEDQIHAGDQQGAGISNQTSPVTLSARKLIKSVLD 659
Query: 605 QGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINPV 657
QGT+ P ++ P+ W +L LYPLP IL D ++ + + C +NP
Sbjct: 660 QGTMSPFPQSVRPILWDYASSLQLYPLPTAFILADPEIAPFCLTYEGCHVMNPA 713
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 91
VI AFD P+ Y+ + K F++ K L + K+ LFR+RYN++ QR LR+ LF
Sbjct: 184 VIGAFDTPRLAYNAEKKNFEVTKIKPSLFPEPSHKTALFRDRYNLVHQRLLRNELF 239
>gi|786319|gb|AAB68109.1| Dpb2p: DNA Polymerase epsilon, subunit B [Saccharomyces cerevisiae]
Length = 692
Score = 85.1 bits (209), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 116/502 (23%), Positives = 210/502 (41%), Gaps = 95/502 (18%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 173 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 232
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 233 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 292
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 293 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 352
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 353 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 412
Query: 441 NDKVRNNLCEFITSEFQGFVPNSTMATNP--CRVQYCSQEILVVREELLSKMCRNCIKFP 498
+ K+ L + + + +P + S + V + S+ + +F
Sbjct: 413 DLKIMTALSKIL----------QKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQFK 462
Query: 499 EEGD-ISKHVSK-NNGEKDIIFLIVPKIY-VEGTVTSKVLSPALPK-----FITSEFQGF 550
D ++ +S+ +N ++ + +P + G++ S S LP+ T +
Sbjct: 463 NNFDALATLLSRFDNLTENTTMIFIPGPNDLWGSMVSLGASGTLPQDPIPSAFTKKINKV 522
Query: 551 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDI-------------- 594
N ++NP R+ Y SQEI++ R++L + R+ ++FP E D+
Sbjct: 523 CKNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTENDNMMSKDTDI 582
Query: 595 -------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
++ V+T++ QG L +L P+ W L+L P+P +
Sbjct: 583 VPIDELVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCPIPSTM 642
Query: 636 ILGDQLNA-YTIQNTDCIFINP 656
+L D +A + + C INP
Sbjct: 643 VLCDTTSAQFDLTYNGCKVINP 664
>gi|37362708|ref|NP_015501.2| Dpb2p [Saccharomyces cerevisiae S288c]
gi|85681935|sp|P24482.3|DPB2_YEAST RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|285815700|tpg|DAA11592.1| TPA: Dpb2p [Saccharomyces cerevisiae S288c]
Length = 689
Score = 84.7 bits (208), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 116/502 (23%), Positives = 210/502 (41%), Gaps = 95/502 (18%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 170 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 229
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 230 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 289
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 290 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 349
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 350 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 409
Query: 441 NDKVRNNLCEFITSEFQGFVPNSTMATNP--CRVQYCSQEILVVREELLSKMCRNCIKFP 498
+ K+ L + + + +P + S + V + S+ + +F
Sbjct: 410 DLKIMTALSKIL----------QKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQFK 459
Query: 499 EEGD-ISKHVSK-NNGEKDIIFLIVPKIY-VEGTVTSKVLSPALPK-----FITSEFQGF 550
D ++ +S+ +N ++ + +P + G++ S S LP+ T +
Sbjct: 460 NNFDALATLLSRFDNLTENTTMIFIPGPNDLWGSMVSLGASGTLPQDPIPSAFTKKINKV 519
Query: 551 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDI-------------- 594
N ++NP R+ Y SQEI++ R++L + R+ ++FP E D+
Sbjct: 520 CKNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTENDNMMSKDTDI 579
Query: 595 -------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
++ V+T++ QG L +L P+ W L+L P+P +
Sbjct: 580 VPIDELVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCPIPSTM 639
Query: 636 ILGDQLNA-YTIQNTDCIFINP 656
+L D +A + + C INP
Sbjct: 640 VLCDTTSAQFDLTYNGCKVINP 661
>gi|392296178|gb|EIW07281.1| Dpb2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 689
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 208/507 (41%), Gaps = 105/507 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 170 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 229
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 230 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 289
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 290 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 349
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 350 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 409
Query: 441 NDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+ K+ L + + +QG F A+ R S + + L + +
Sbjct: 410 DLKIMTALSKILQKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDALATLL 469
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK-----FITS 545
R ++++N +IF+ P + G++ S S LP+ T
Sbjct: 470 SR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIPSAFTK 514
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDI--------- 594
+ N ++NP R+ Y SQEI++ R++L + R+ ++FP E D+
Sbjct: 515 KINKVCKNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTENDNMMA 574
Query: 595 ------------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++ V+T++ QG L +L P+ W L+L P
Sbjct: 575 KDTDIVPIDELVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCP 634
Query: 631 LPDLVILGDQLNA-YTIQNTDCIFINP 656
+P ++L D +A + + C INP
Sbjct: 635 IPSTMVLCDTTSAQFDLTYNGCKVINP 661
>gi|259150332|emb|CAY87135.1| Dpb2p [Saccharomyces cerevisiae EC1118]
Length = 689
Score = 84.7 bits (208), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 208/507 (41%), Gaps = 105/507 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 170 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 229
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 230 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 289
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 290 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 349
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 350 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 409
Query: 441 NDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+ K+ L + + +QG F A+ R S + + L + +
Sbjct: 410 DLKIMTALSKILQKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDALATLL 469
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK-----FITS 545
R ++++N +IF+ P + G++ S S LP+ T
Sbjct: 470 SR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIPSAFTK 514
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDI--------- 594
+ N ++NP R+ Y SQEI++ R++L + R+ ++FP E D+
Sbjct: 515 KINKVCKNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTENDNMMS 574
Query: 595 ------------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++ V+T++ QG L +L P+ W L+L P
Sbjct: 575 KDTDIVPIDELVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCP 634
Query: 631 LPDLVILGDQLNA-YTIQNTDCIFINP 656
+P ++L D +A + + C INP
Sbjct: 635 IPSTMVLCDTTSAQFDLTYNGCKVINP 661
>gi|151942946|gb|EDN61292.1| DNA polymerase epsilon subunit B [Saccharomyces cerevisiae YJM789]
gi|349581973|dbj|GAA27130.1| K7_Dpb2p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 689
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 208/507 (41%), Gaps = 105/507 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 170 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 229
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 230 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 289
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 290 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 349
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 350 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 409
Query: 441 NDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+ K+ L + + +QG F A+ R S + + L + +
Sbjct: 410 DLKIMTALSKILQKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDALATLL 469
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK-----FITS 545
R ++++N +IF+ P + G++ S S LP+ T
Sbjct: 470 SR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIPSAFTK 514
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDI--------- 594
+ N ++NP R+ Y SQEI++ R++L + R+ ++FP E D+
Sbjct: 515 KINKVCKNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTENDNMMA 574
Query: 595 ------------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++ V+T++ QG L +L P+ W L+L P
Sbjct: 575 KDTDIVPIDELVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCP 634
Query: 631 LPDLVILGDQLNA-YTIQNTDCIFINP 656
+P ++L D +A + + C INP
Sbjct: 635 IPSTMVLCDTTSAQFDLTYNGCKVINP 661
>gi|396473592|ref|XP_003839374.1| similar to DNA polymerase epsilon subunit B [Leptosphaeria maculans
JN3]
gi|312215943|emb|CBX95895.1| similar to DNA polymerase epsilon subunit B [Leptosphaeria maculans
JN3]
Length = 777
Score = 84.3 bits (207), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/549 (21%), Positives = 197/549 (35%), Gaps = 147/549 (26%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VI AF+ P+ Y+ K F+ K L D K++LFR+RY+I+ QR LR+ F
Sbjct: 208 VIGAFEQPKLIYNVTQKHFEKSASKPSLFPDPSHKTELFRQRYHIVHQRILRNETFQAPT 267
Query: 302 -PNADSVKLDW--------------VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
A S L V L+ T H ++LGM++ + L D TG
Sbjct: 268 FSTARSATLSRTGSAATSQMNTITPVANLLGRTGTTH--LLLGMLTVSATGQLSLSDLTG 325
Query: 347 IVQLDLSQTSYHP--GLY-TENCIVLVEGHYKDQILHVD-------------------AL 384
+ LD+ P G Y IVLVEG Y++ ++
Sbjct: 326 TIALDIQHARPIPENGAYFAPGMIVLVEGSYEEDAGTGSTLGGSGGIGGTIGGKFLGFSV 385
Query: 385 GFPP-----------PEASKNSRL--YFGNQNIWG-GPSPVSLKSVNRMTKMEKNNENA- 429
G PP E KNS FG + G G + +N++ N E +
Sbjct: 386 GHPPCERRTATFGGVEEVDKNSLAGPAFGGTDFLGVGSQRATGSRMNKIASKLLNAEQSH 445
Query: 430 MIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 489
IV+ SD+HLD + L + T +P VQ +++ SK
Sbjct: 446 HIVMASDLHLDIPSTLSALRTLL----------RTYTPDPTDVQPVYPHAIILMGNFSSK 495
Query: 490 MC------RNCIKFPEEGDISKHVSKNN----GEKDIIFL-----IVPKIYVEGTVTSKV 534
I++ E D V + +IF+ P + G T +
Sbjct: 496 ASLAGVPGAGSIEYKEHFDALASVLTDFQQLIAHTTLIFVPGDNDAWPSAFSAGAAT-PL 554
Query: 535 LSPALPKFITSEFQGFVPNSTM-----------------ATNPCRVQY--CSQEILVVRE 575
+P T+ + V + +NP R+ + E+ ++R+
Sbjct: 555 PRKQVPHLFTNRIRRVVAEANREVWGPGKAKGKEGEVIWTSNPSRLSWFGVKGEMAILRD 614
Query: 576 ELLSKMCRNCIKFPE--------------------------------------------- 590
+++ ++ RN I+FP+
Sbjct: 615 DIVGRLQRNSIRFPKPEPEVDDSMPFAPSAQPSAVDLQDPMDLDGGLVLPPVHKKPNSEI 674
Query: 591 --EGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQ 647
+ +++ RT++SQ L PL+ P++W L+LYPLP ++L D + + ++
Sbjct: 675 DADTQVARALTRTILSQSHLSPFPLSARPLHWDFAHTLNLYPLPTSLVLADSEAPPFVVK 734
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 735 YFGCTVMNP 743
Score = 46.6 bits (109), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
VI AF+ P+ Y+ K F+ K L D K++LFR+RY+I+ QR LR+ F
Sbjct: 208 VIGAFEQPKLIYNVTQKHFEKSASKPSLFPDPSHKTELFRQRYHIVHQRILRNETFQ 264
>gi|323346041|gb|EGA80332.1| Dpb2p [Saccharomyces cerevisiae Lalvin QA23]
Length = 692
Score = 84.0 bits (206), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 209/507 (41%), Gaps = 105/507 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 173 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 232
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 233 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 292
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 293 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 352
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 353 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 412
Query: 441 NDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+ K+ L + + +QG F A+ R S + + L + +
Sbjct: 413 DLKIMTALSKILQKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDALATLL 472
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK-----FITS 545
R ++++N +IF+ P + G++ S S LP+ T
Sbjct: 473 SR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIPSAFTK 517
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---------------- 589
+ N ++NP R+ Y SQEI++ R++L + R+ ++FP
Sbjct: 518 KINKVCXNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDXYTENDNMMS 577
Query: 590 EEGDI-------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++ DI ++ V+T++ QG L +L P+ W L+L P
Sbjct: 578 KDTDIVPIDZLVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCP 637
Query: 631 LPDLVILGDQLNA-YTIQNTDCIFINP 656
+P ++L D +A + + C INP
Sbjct: 638 IPSTMVLCDXTSAQFDLTYNGCKVINP 664
>gi|45190339|ref|NP_984593.1| AEL267Cp [Ashbya gossypii ATCC 10895]
gi|74693960|sp|Q758V1.1|DPB2_ASHGO RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|44983235|gb|AAS52417.1| AEL267Cp [Ashbya gossypii ATCC 10895]
gi|374107808|gb|AEY96715.1| FAEL267Cp [Ashbya gossypii FDAG1]
Length = 677
Score = 83.6 bits (205), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 116/524 (22%), Positives = 197/524 (37%), Gaps = 101/524 (19%)
Query: 224 LSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA---------DSD 274
+ + R E F VI F QF YD ++++LV ++ +
Sbjct: 136 MDEDTVREEPLDWTHYFKVIDTFSQQQFTYDVTKRRYRLVQQRESAAGPLSTLLRIPSLE 195
Query: 275 AKSKLFRERYNIIRQRTLRHSLFNN---INP-----------NADSVKLDWVEYLMSLTN 320
A F RY+++R R LR++ F N NP +A L Y MS+T
Sbjct: 196 ANLAQFPTRYHLVRDRVLRNASFQNDDVYNPLSSMQQLQQQLDAGGAPLASTAY-MSITQ 254
Query: 321 VNH-------KTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEG 372
+ + ++LG+I + + + LEDP+G +++D+S+T G Y CIVL EG
Sbjct: 255 IKNLLGRDGKNFLLLGLIRKDSKGFWSLEDPSGSIEIDISETYPTKGTYYVPGCIVLAEG 314
Query: 373 HYKDQ--ILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------M 422
Y V ++ PP E + GN ++ G P + ++R+ K +
Sbjct: 315 IYSSAGNRFRVSSITHPPGERREAFLEAIGNLDLLGIHGPSNESYISRLDKELKIRLHYL 374
Query: 423 EKNNENAMIVIL-SDVHLDNDKVRNNLCE-FITSEFQG----FVPNSTMATN--PCRVQY 474
EK + V L ++ LD+ L + F E +P S +T P
Sbjct: 375 EKELTDHRFVFLGGNIFLDDTMTETALAKLFDVLEHDPPTVLVLPGSFTSTPIYPSSDSK 434
Query: 475 CSQEILVVRE--ELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTS 532
S R + L+K+ + E N+ + +L V GT+
Sbjct: 435 SSSSTAAYRANFDALAKLLSKYERLINETTFVFIPGDNDPWGSMAYL-----GVAGTLPQ 489
Query: 533 KVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--- 589
+P ++ + +NP R+ Y SQE++++R+++ ++ RN I FP
Sbjct: 490 H----PIPGDFVTKVNRICKHVVWGSNPTRIAYLSQELVIMRDDMCNRFKRNSIIFPTVE 545
Query: 590 ------------------EEGDI------------------SKHFVRTLVSQGTLVSLPL 613
D+ S+ V+T++ Q L
Sbjct: 546 EEQKQEYMLLQQELQDDERSSDLSISQLIKSRDQLPASVQESRKIVKTILDQQHLSPFTS 605
Query: 614 NLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINP 656
+ P+ W L L P+P +I+ D Y + C INP
Sbjct: 606 QVRPITWDYDYTLHLSPIPSTMIICDPTAPKYDVTYNGCKSINP 649
Score = 40.4 bits (93), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 8 PSCTYDLIEFTTNECCRTEINSEEQI----------FSVISAFDIPQFDYDPDLKKFKLV 57
P+ Y +E + + TE E+ + F VI F QF YD ++++LV
Sbjct: 116 PTEAYSAVESSGGDVTATEPMDEDTVREEPLDWTHYFKVIDTFSQQQFTYDVTKRRYRLV 175
Query: 58 DKKRKLCA---------DSDAKSKLFRERYNIIRQRTLRHSLFNN 93
++ +A F RY+++R R LR++ F N
Sbjct: 176 QQRESAAGPLSTLLRIPSLEANLAQFPTRYHLVRDRVLRNASFQN 220
>gi|366989367|ref|XP_003674451.1| hypothetical protein NCAS_0A15150 [Naumovozyma castellii CBS 4309]
gi|342300314|emb|CCC68073.1| hypothetical protein NCAS_0A15150 [Naumovozyma castellii CBS 4309]
Length = 715
Score = 83.6 bits (205), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 110/506 (21%), Positives = 193/506 (38%), Gaps = 102/506 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKL----VDKKRKLCADSDAKSKLFRERYNIIRQRTLRHS 295
F VI+ + +F Y+ + +F+ + + +F RY +IR R +R+
Sbjct: 195 FKVINVSEQQKFTYNANKMQFQFCPINTNTSVIKLPTTQTNVTIFPTRYYLIRDRVMRNE 254
Query: 296 LFNN---INPNADSVKLDW----------VEYLMSLTNVNH-------KTVVLGMISQLK 335
F N NP + + L + MS+T + + ++LG++ +
Sbjct: 255 NFQNDDTFNPLSSMMHLKEELQESGGNVNITSFMSITPIKNLLGRDGMNFLLLGLLKKNT 314
Query: 336 ENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHY--KDQILHVDALGFPPPEAS 392
+ LEDP+G +++++SQT GL Y CIVL EG Y HV ++ PP E
Sbjct: 315 RGNWALEDPSGSIEIEISQTIPTKGLYYVPGCIVLAEGIYFSVGNKFHVTSMTHPPGERR 374
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLDNDK 443
+ + GN ++ G + + R+ +EK E+ VIL D+ LD
Sbjct: 375 ETTLEAIGNLDLLGVHGASNENYIARLDNDLKIRLHFLEKELEDHRFVILGGDLFLDELA 434
Query: 444 VRNNLCEFITSE---------FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNC 494
L + T FQG + + P S+ + ++ N
Sbjct: 435 TLEALKKTFTKLEEDPPTLLIFQG-----SFTSVPVHASMTSRNVSAT-----TQYKNNF 484
Query: 495 IKFPEEGDISKHVSKNNGEKDIIFLIVP----KIYVEGTVTSKVLSPALPKFITSEFQGF 550
G +S + NG +IF+ P V T +P + T +
Sbjct: 485 DTL--AGLLSTFENIINGST-LIFIPGPNDPWSSMVSLGATGIFPQKPIPTYFTQKMNRV 541
Query: 551 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDI---------------- 594
+ +NP R+ Y SQE+++ R+ L+ + RN + FP +
Sbjct: 542 CKHIIWGSNPTRIAYLSQEVVISRDNLVERFKRNSVIFPTVEETREQRLQEVEERLQNIS 601
Query: 595 -----------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
++ V+T++ QG L N+ P++W +L+LYP+
Sbjct: 602 IDETVSIDELVKDKDQKNLKVQETRKIVKTILDQGHLSPFTTNIRPLFWDLDYSLTLYPI 661
Query: 632 PDLVILGD-QLNAYTIQNTDCIFINP 656
P +I+ D + + C INP
Sbjct: 662 PTTLIMCDTSAPQFDLTYNGCKSINP 687
>gi|347828858|emb|CCD44555.1| similar to DNA polymerase epsilon subunit B [Botryotinia
fuckeliana]
Length = 781
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 126/582 (21%), Positives = 208/582 (35%), Gaps = 149/582 (25%)
Query: 208 IPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR 267
IP + + + M+ L+++ E + + VI AF+ P+ Y+ K F K
Sbjct: 187 IPREDSQSSLGMSTLEVNDEEDEDGLMDPRRWLKVIDAFEQPRLVYNVAKKHFDRDTSKP 246
Query: 268 KLCADSDAKSKLFRERYNIIRQRTLRHSLFNN----------------INPNADSVKLDW 311
L + K+ LF+ RYN+I QR LR+ F I S KL
Sbjct: 247 SLFPPASHKTLLFQNRYNVIHQRLLRNESFQTPAFQGGKSSLQRSTSAITTQQQSYKLTP 306
Query: 312 VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIV 368
+ L+ +H ++LG++S + D TG + LDL+ + P + +V
Sbjct: 307 IANLLGRNRSSH--MLLGLLSISPTGTLAINDLTGSIALDLTHAAAIPEDSAWFAPGMMV 364
Query: 369 LVEGHYKDQILHVDA--------------------LGFPPP-----------EASKNSRL 397
LV+G Y++ + +G PPP E +
Sbjct: 365 LVDGTYEEDETGTSSRLGGNGGVGGTISGKFVGFFIGHPPPERRHVTLGTAGEGDTTAGG 424
Query: 398 YFGNQNIWGGPSPVSLKSVNRMTKMEKN----------------NENAMIVILSDVHLDN 441
FG + G S +L N+M ++E+ +VIL DVHLD
Sbjct: 425 GFGWVDFLGVGSSRALG--NKMQRLEQKLLRPPPPDTDTDDPPPPSRGRVVILGDVHLDI 482
Query: 442 DKVRNNLCEFI---TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+ L + + +SE +G P + + + S +L I++
Sbjct: 483 PQTLQALKKILSLYSSEPEGCTPMTFILLG----SFVSHAVLA------RGGSGGSIEYK 532
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEG---------TVTSKVLSP--ALPKFITSEF 547
E D V E I I++ G + S V P +P+ TS
Sbjct: 533 EYFDSLAAVLS---EYPTILSTATFIFIPGPNDAWVSAFSSGSTVPLPRKPVPEMFTSRI 589
Query: 548 QGFVPNSTM----------------ATNPCRVQY--CSQEILVVREELLSKMCRNCIKF- 588
+ N+ +NP RV S E++V R+++ ++ R +
Sbjct: 590 KRAFANANTEMEKEHGNKGDGEAIWTSNPARVSLFGMSCELVVFRDDVSGRLRRTAVTLK 649
Query: 589 ------PEEGD--------------------------ISKHFVRTLVSQGTLVSLPLNLC 616
PE D ++ RTL+ QG L PLN+
Sbjct: 650 SSQTSNPENEDEDIDMSPPPSSIPSSTPPPEIDPDIHTARRLTRTLLDQGHLSPFPLNIA 709
Query: 617 PVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINPV 657
P +W ALS+YPLP +++ D A+ + C +NP
Sbjct: 710 PQHWDFSNALSIYPLPTAIVMCDVDSPAFCLTYEGCHVMNPA 751
Score = 41.2 bits (95), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 22/136 (16%)
Query: 26 EINSEE---------QIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 76
E+N EE + VI AF+ P+ Y+ K F K L + K+ LF+
Sbjct: 202 EVNDEEDEDGLMDPRRWLKVIDAFEQPRLVYNVAKKHFDRDTSKPSLFPPASHKTLLFQN 261
Query: 77 RYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSG 136
RYN+I QR LR+ F + +++ T + Q + +
Sbjct: 262 RYNVIHQRLLRNESFQT------------PAFQGGKSSLQRSTSAITTQQQSYKLTPIAN 309
Query: 137 LLGKHQSPHLNLLCLI 152
LLG+++S H+ LL L+
Sbjct: 310 LLGRNRSSHM-LLGLL 324
>gi|154296337|ref|XP_001548600.1| hypothetical protein BC1G_12995 [Botryotinia fuckeliana B05.10]
Length = 781
Score = 83.2 bits (204), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 126/582 (21%), Positives = 208/582 (35%), Gaps = 149/582 (25%)
Query: 208 IPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR 267
IP + + + M+ L+++ E + + VI AF+ P+ Y+ K F K
Sbjct: 187 IPREDSQSSLGMSTLEVNDEEDEDGLMDPRRWLKVIDAFEQPRLVYNVAKKHFDRDTSKP 246
Query: 268 KLCADSDAKSKLFRERYNIIRQRTLRHSLFNN----------------INPNADSVKLDW 311
L + K+ LF+ RYN+I QR LR+ F I S KL
Sbjct: 247 SLFPPASHKTLLFQNRYNVIHQRLLRNESFQTPAFQGGKSSLQRSTSAITTQQQSYKLTP 306
Query: 312 VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIV 368
+ L+ +H ++LG++S + D TG + LDL+ + P + +V
Sbjct: 307 IANLLGRNRSSH--MLLGLLSISPTGTLAINDLTGSIALDLTHAAAIPEDSAWFAPGMMV 364
Query: 369 LVEGHYKDQILHVDA--------------------LGFPPP-----------EASKNSRL 397
LV+G Y++ + +G PPP E +
Sbjct: 365 LVDGTYEEDETGTSSRLGGNGGVGGTISGKFVGFFIGHPPPERRHVTLGTAGEGDTTAGG 424
Query: 398 YFGNQNIWGGPSPVSLKSVNRMTKMEKN----------------NENAMIVILSDVHLDN 441
FG + G S +L N+M ++E+ +VIL DVHLD
Sbjct: 425 GFGWVDFLGVGSSRALG--NKMQRLEQKLLRPPPPDTDTDDPPPPSRGRVVILGDVHLDI 482
Query: 442 DKVRNNLCEFI---TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP 498
+ L + + +SE +G P + + + S +L I++
Sbjct: 483 PQTLQALKKILSLYSSEPEGCTPMTFILLG----SFVSHAVLA------RGGSGGSIEYK 532
Query: 499 EEGDISKHVSKNNGEKDIIFLIVPKIYVEG---------TVTSKVLSP--ALPKFITSEF 547
E D V E I I++ G + S V P +P+ TS
Sbjct: 533 EYFDSLAAVLS---EYPTILSTATFIFIPGPNDAWVSAFSSGSTVPLPRKPVPEMFTSRI 589
Query: 548 QGFVPNSTM----------------ATNPCRVQY--CSQEILVVREELLSKMCRNCIKF- 588
+ N+ +NP RV S E++V R+++ ++ R +
Sbjct: 590 KRAFANANTEMEKENGNKGDGEAIWTSNPARVSLFGMSCELVVFRDDVSGRLRRTAVTLK 649
Query: 589 ------PEEGD--------------------------ISKHFVRTLVSQGTLVSLPLNLC 616
PE D ++ RTL+ QG L PLN+
Sbjct: 650 SSQTSNPENEDEDIDMSPPPSSIPSSTPPPEIDPDIHTARRLTRTLLDQGHLSPFPLNIA 709
Query: 617 PVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINPV 657
P +W ALS+YPLP +++ D A+ + C +NP
Sbjct: 710 PQHWDFSNALSIYPLPTAIVMCDVDSPAFCLTYEGCHVMNPA 751
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 22/136 (16%)
Query: 26 EINSEE---------QIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 76
E+N EE + VI AF+ P+ Y+ K F K L + K+ LF+
Sbjct: 202 EVNDEEDEDGLMDPRRWLKVIDAFEQPRLVYNVAKKHFDRDTSKPSLFPPASHKTLLFQN 261
Query: 77 RYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSG 136
RYN+I QR LR+ F + +++ T + Q + +
Sbjct: 262 RYNVIHQRLLRNESFQT------------PAFQGGKSSLQRSTSAITTQQQSYKLTPIAN 309
Query: 137 LLGKHQSPHLNLLCLI 152
LLG+++S H+ LL L+
Sbjct: 310 LLGRNRSSHM-LLGLL 324
>gi|256272440|gb|EEU07422.1| Dpb2p [Saccharomyces cerevisiae JAY291]
Length = 689
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/512 (23%), Positives = 208/512 (40%), Gaps = 115/512 (22%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 170 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 229
Query: 292 LRHSLFNN---INPNADSVKLDWVEYLMSLTNVNHKT---------------------VV 327
+R+ F N NP + V L L+N N + ++
Sbjct: 230 MRNENFQNSDMFNPLSSMVSLQ-----NELSNTNRQQQSSSMSISPIKNLLGRDAQNFLL 284
Query: 328 LGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDAL 384
LG++++ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++
Sbjct: 285 LGLLNKNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSM 344
Query: 385 GFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-S 435
PP E + + GN ++ G + + R+ K +EK + VIL +
Sbjct: 345 TLPPGERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGA 404
Query: 436 DVHLDNDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREE 485
++ LD+ K+ L + + +QG F A+ R S + +
Sbjct: 405 NLFLDDLKIMTALSKILQKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDA 464
Query: 486 LLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK---- 541
L + + R ++++N +IF+ P + G++ S S LP+
Sbjct: 465 LATLLSR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIP 509
Query: 542 -FITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDI---- 594
T + N ++NP R+ Y SQEI++ R++L + R+ ++FP E D+
Sbjct: 510 SAFTKKINKVCKNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTEN 569
Query: 595 -----------------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGA 625
++ V+T++ QG L +L P+ W
Sbjct: 570 DNMMSKDTDIVPIDELVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHT 629
Query: 626 LSLYPLPDLVILGDQLNA-YTIQNTDCIFINP 656
L+L P+P ++L D +A + + C INP
Sbjct: 630 LTLCPIPSTMVLCDTTSAQFDLTYNGCKVINP 661
>gi|207340212|gb|EDZ68632.1| YPR175Wp-like protein [Saccharomyces cerevisiae AWRI1631]
Length = 692
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 209/507 (41%), Gaps = 105/507 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 173 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 232
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 233 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 292
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 293 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 352
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 353 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 412
Query: 441 NDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+ K+ L + + +QG F A+ R S + + L + +
Sbjct: 413 DLKIMTALSKILQKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDALATLL 472
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK-----FITS 545
R ++++N +IF+ P + G++ S S LP+ T
Sbjct: 473 SR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIPSAFTK 517
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---------------- 589
+ N ++NP R+ Y SQEI++ R++L + R+ ++FP
Sbjct: 518 KINKVCRNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDFYTENDNMMS 577
Query: 590 EEGDI-------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++ DI ++ V+T++ QG L +L P+ W L+L P
Sbjct: 578 KDTDIVPIDQLVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCP 637
Query: 631 LPDLVILGDQLNA-YTIQNTDCIFINP 656
+P ++L D +A + + C INP
Sbjct: 638 IPSTMVLCDITSAQFDLTYNGCKVINP 664
>gi|171412|gb|AAA34576.1| DNA polymerase II subunit-B [Saccharomyces cerevisiae]
Length = 698
Score = 83.2 bits (204), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 209/507 (41%), Gaps = 105/507 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 179 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 238
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 239 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 298
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 299 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 358
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 359 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 418
Query: 441 NDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+ K+ L + + +QG F A+ R S + + L + +
Sbjct: 419 DLKIMTALSKILQKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDALATLL 478
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK-----FITS 545
R ++++N +IF+ P + G++ S S LP+ T
Sbjct: 479 SR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIPSAFTK 523
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---------------- 589
+ N ++NP R+ Y SQEI++ R++L + R+ ++FP
Sbjct: 524 KINKVCRNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDFYTENDNMMS 583
Query: 590 EEGDI-------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++ DI ++ V+T++ QG L +L P+ W L+L P
Sbjct: 584 KDTDIVPIDQLVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCP 643
Query: 631 LPDLVILGDQLNA-YTIQNTDCIFINP 656
+P ++L D +A + + C INP
Sbjct: 644 IPSTMVLCDITSAQFDLTYNGCKVINP 670
>gi|255710439|ref|XP_002551503.1| KLTH0A00924p [Lachancea thermotolerans]
gi|238932880|emb|CAR21061.1| KLTH0A00924p [Lachancea thermotolerans CBS 6340]
Length = 696
Score = 82.8 bits (203), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 102/484 (21%), Positives = 193/484 (39%), Gaps = 94/484 (19%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKK-RKLCADSDAKSKLFRERYNIIRQRTLRHSLF- 297
F +I AF F YD ++++L ++ RK+ +++ +F RY++++ R +R+ LF
Sbjct: 177 FKIIDAFAQQNFIYDHTTRQYRLKGQRARKVIPQAESNVAMFANRYHVVKDRVMRNDLFQ 236
Query: 298 ---NNINPNA------DSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKENRYFL 341
+ NP + S + M++T + ++LG++ + + L
Sbjct: 237 GHGDTFNPLSSIAGPMSSGPGSFSSQNMTITQIKNLLGRDGRSFLLLGLLRPNYKGGWSL 296
Query: 342 EDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHY--KDQILHVDALGFPPPEASKNSRLY 398
EDP+G V++DLSQ G Y CI+L EG Y HV +L PP E + +
Sbjct: 297 EDPSGSVEVDLSQAIPTVGTFYVSGCILLAEGIYFSAGHKFHVASLAHPPGERREATMDA 356
Query: 399 FGNQNIWG---GPSPVSLKSVN-----RMTKMEKN-NENAMIVILSDVHLDNDKVRNNLC 449
GN ++ G SP + ++ RM +E+ ++ + D+ LD ++ L
Sbjct: 357 IGNLDLLGVHQQSSPNYISRIDKDLKIRMHLLERELTDHRFAFLGGDLFLDQPQILEALR 416
Query: 450 EFITSEFQGFVP-----NSTMATNPCRVQYCSQEILVVRE-----ELLSKMCRNCIKFPE 499
+ + ++ +G P + ++ P S+ I + L+ + N +
Sbjct: 417 K-VFAKLEGDPPTMMVLQGSFSSAPLFPVMSSKNISATSAYKNNFDALALLLLNFERLIN 475
Query: 500 EGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATN 559
E N+ + L ++ + + P +N
Sbjct: 476 ETTFVFIPGNNDPWSSTVSLGTAGVWPQKPI---------PGIFAQRINRVCKKIHWGSN 526
Query: 560 PCRVQYCSQEILVVREELLSKMCRNCIKFP-----EE--GDI------------------ 594
P RV Y SQE+++VR+++ + R+ I FP EE G++
Sbjct: 527 PTRVAYLSQELILVRDDINGRFKRHNIAFPAIMDDEEYGGEVADSALAQDALMPELNDNY 586
Query: 595 -------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
S+ V+T++ QG + + PV W+ L L P+P L+
Sbjct: 587 EGIDQLVKSQDQLAASVQESRRLVKTILDQGHISPFVSSTRPVIWNLDHTLHLTPIPSLM 646
Query: 636 ILGD 639
++ D
Sbjct: 647 VICD 650
Score = 39.7 bits (91), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKK-RKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
F +I AF F YD ++++L ++ RK+ +++ +F RY++++ R +R+ LF
Sbjct: 177 FKIIDAFAQQNFIYDHTTRQYRLKGQRARKVIPQAESNVAMFANRYHVVKDRVMRNDLFQ 236
Query: 93 N 93
Sbjct: 237 G 237
>gi|190408098|gb|EDV11363.1| DNA polymerase epsilon subunit B [Saccharomyces cerevisiae RM11-1a]
Length = 689
Score = 82.8 bits (203), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 119/507 (23%), Positives = 209/507 (41%), Gaps = 105/507 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 170 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 229
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 230 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 289
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 290 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 349
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 350 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 409
Query: 441 NDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+ K+ L + + +QG F A+ R S + + L + +
Sbjct: 410 DLKIMTALSKILQKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDALATLL 469
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK-----FITS 545
R ++++N +IF+ P + G++ S S LP+ T
Sbjct: 470 SR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIPSAFTK 514
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---------------- 589
+ N ++NP R+ Y SQEI++ R++L + R+ ++FP
Sbjct: 515 KINKVCRNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDFYTENDNMMS 574
Query: 590 EEGDI-------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++ DI ++ V+T++ QG L +L P+ W L+L P
Sbjct: 575 KDTDIVPIDQLVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCP 634
Query: 631 LPDLVILGDQLNA-YTIQNTDCIFINP 656
+P ++L D +A + + C INP
Sbjct: 635 IPSTMVLCDITSAQFDLTYNGCKVINP 661
>gi|449463930|ref|XP_004149683.1| PREDICTED: DNA polymerase epsilon subunit 2-like [Cucumis sativus]
Length = 375
Score = 82.4 bits (202), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 46/133 (34%), Positives = 76/133 (57%), Gaps = 3/133 (2%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
+I+AFDIP+F YDP +KK L + + D+ AK+ L+R+R+ ++ QR R F+
Sbjct: 96 IINAFDIPKFRYDP-IKKIFLHTENLPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPA 154
Query: 302 PNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP 359
+ E + SL + V+G+ISQ+++ ++LED T V+++LS
Sbjct: 155 FDIGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDGHFYLEDLTASVEINLSSAKITT 214
Query: 360 GLYTENCIVLVEG 372
GL+TEN I++ EG
Sbjct: 215 GLFTENTIIVAEG 227
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 53/98 (54%), Gaps = 3/98 (3%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
+I+AFDIP+F YDP +KK L + + D+ AK+ L+R+R+ ++ QR R F+
Sbjct: 96 IINAFDIPKFRYDP-IKKIFLHTENLPIHGDASAKAALYRDRFLLLSQRLSRDQHFSKPA 154
Query: 96 PNADSVKLDWVEY--LMSLTNVNHKTVVLGMISQLKEN 131
+ E + SL + V+G+ISQ+++
Sbjct: 155 FDIGMSHFGSCEISPIQSLVGQTGRKWVMGVISQMEDG 192
>gi|403338437|gb|EJY68458.1| DNA polymerase epsilon subunit B2 [Oxytricha trifallax]
Length = 664
Score = 82.0 bits (201), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 83/379 (21%), Positives = 157/379 (41%), Gaps = 71/379 (18%)
Query: 317 SLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG--LYTENCIVLVEGHY 374
S+ N VLG+++ +++ Y+LED V++ S+ + +TEN I++ G Y
Sbjct: 243 SIMGSNQAKWVLGILTMHEDSEYYLEDQHQTVKVSFSELEFADPEVFFTENSILMCCGIY 302
Query: 375 KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPS---------------PVSLKSVNRM 419
++ + + PP A K+ + ++ +G S +S ++N
Sbjct: 303 HNETYFLTQIRQPPLHAQKSLQFKVNERDYFGAYSKKKMMLAKQQVDPTFALSELTINNT 362
Query: 420 TK-----MEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQY 474
+K ++ + IVILS + LD+ + NL + + ++
Sbjct: 363 SKTRPDAQKREKPDDCIVILSQLELDSVNTQKNLPQLLEG-----------------LES 405
Query: 475 CSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKV 534
+I+V+ +S+ + + + + + + E ++ FL + + V
Sbjct: 406 MKADIIVLVGNFISQKLSEKLSYDQFKTYFESIGQVVRENNLTFL---RDSTQWIFIPSV 462
Query: 535 LSPALPK---------FITSEFQGFVP----NSTMATNPCRVQYCSQEILVVREELLSKM 581
P PK + + F+G P N + TNP R+ Y +EI++ R K+
Sbjct: 463 DDPGQPKLMPCLQFQEYFLTGFKGNGPQRIKNVILGTNPMRISYYGKEIVISRYNFFKKL 522
Query: 582 CRNCI---KFPEE-------------GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGA 625
RN I + +E D S +T++ QGTL+ +P + P+ WS A
Sbjct: 523 KRNQIPKIQIAQEKTRTQNNQSTSYNSDDSFKIAKTVLHQGTLIPVPSIVQPIMWSFSDA 582
Query: 626 LSLYPLPDLVILGDQLNAY 644
L L P PD +IL D++ Y
Sbjct: 583 LQLVPHPDFLILCDEITDY 601
>gi|365762630|gb|EHN04164.1| Dpb2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 692
Score = 80.9 bits (198), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 118/507 (23%), Positives = 208/507 (41%), Gaps = 105/507 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++ RY + R
Sbjct: 173 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMXLTRYYLTNDRV 232
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 233 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 292
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 293 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 352
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 353 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 412
Query: 441 NDKVRNNLCEFITSE---------FQG-FVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+ K+ L + + +QG F A+ R S + + L + +
Sbjct: 413 DLKIMTALSKILQKLNDDPPSLLIWQGSFTSVPVFASMSSRNISSSTQYKNNFDALATLL 472
Query: 491 CRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK-----FITS 545
R ++++N +IF+ P + G++ S S LP+ T
Sbjct: 473 SR-----------FDNLTENT---TMIFIPGPN-DLWGSMVSLGASGTLPQDPIPSAFTK 517
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---------------- 589
+ N ++NP R+ Y SQEI++ R++L + R+ ++FP
Sbjct: 518 KINKVCXNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDXYTENDNMMS 577
Query: 590 EEGDI-------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
++ DI ++ V+T++ QG L +L P+ W L+L P
Sbjct: 578 KDTDIVPIDZLVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCP 637
Query: 631 LPDLVILGDQLNA-YTIQNTDCIFINP 656
+P ++L D +A + + C INP
Sbjct: 638 IPSTMVLCDXTSAQFDLTYNGCKVINP 664
>gi|367005049|ref|XP_003687257.1| hypothetical protein TPHA_0I03220 [Tetrapisispora phaffii CBS 4417]
gi|357525560|emb|CCE64823.1| hypothetical protein TPHA_0I03220 [Tetrapisispora phaffii CBS 4417]
Length = 761
Score = 80.5 bits (197), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 109/471 (23%), Positives = 192/471 (40%), Gaps = 100/471 (21%)
Query: 272 DSDAKSKLFRERYNIIRQRTLRHSLFNN---INPNADSVKL-------DWVEYL--MSLT 319
D +K +F RY ++R R +R+ F N NP + V + D E + MSLT
Sbjct: 277 DIQSKLAIFSTRYYLLRDRIMRNEAFQNNDSFNPLSSMVNMKNALQNNDKSELISNMSLT 336
Query: 320 NV-------NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLY-TENCIVLVE 371
+ ++LGM+ + + LEDP+G +++DLSQT GLY IVL E
Sbjct: 337 PIKTLLGRNGQNFLILGMLRVNAKGNWCLEDPSGDIEVDLSQTLPTAGLYYVPGAIVLTE 396
Query: 372 GHY--KDQILHVDALGFPPPEASKNSRLYFGNQN---IWGGPSPVSLKSVN-----RMTK 421
G Y HV ++ PP E + GN + I G +P + ++ R+
Sbjct: 397 GIYYSATNTFHVTSMTHPPCERRDVTLEAIGNIDLLGIHGISTPNYIAKLDDDLKIRLHY 456
Query: 422 MEKN-NENAMIVILSDVHLDNDKVRNNLCEFITSEFQG----FVPNSTMATNPCRVQYCS 476
+EK+ ++ ++ D+ L+ + + L + + + + + ++ P S
Sbjct: 457 LEKDFTDHRFAIMGGDMFLNELQTLSALRKVFSKLNEDPPIMIILQGSFSSTPVHASTNS 516
Query: 477 QEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDII----FLIVPKIYVEG---- 528
+ + + S +N + S + +D+I FL +P +
Sbjct: 517 KSMSI------STQYKN--------NFDSLASLLSEFEDLINYSTFLFIPGVNDPWSSMV 562
Query: 529 TVTSKVLSPA--LPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI 586
T+ S L P +P T+ + +NP R+ Y SQEI+++R+ + + RN +
Sbjct: 563 TLGSTGLWPQKPIPNHFTTRINRICRHVIWGSNPTRIAYLSQEIVIMRDNICGRFKRNSV 622
Query: 587 KF----PEEG------------------DI------------------SKHFVRTLVSQG 606
+F +EG DI S+ V+T++ QG
Sbjct: 623 QFRTVEEKEGINKQLKKDNEKSQLLDDDDIPMKSLSIDPNKLPARVHESRKIVKTILDQG 682
Query: 607 TLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINP 656
L ++ P+ W +L+LYP+P +IL DQ + + C NP
Sbjct: 683 HLSPFTPDIRPIAWGLDHSLTLYPIPSTLILCDQTAPQFELTYNGCKAFNP 733
>gi|156055730|ref|XP_001593789.1| hypothetical protein SS1G_05217 [Sclerotinia sclerotiorum 1980]
gi|154703001|gb|EDO02740.1| hypothetical protein SS1G_05217 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 782
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 122/540 (22%), Positives = 199/540 (36%), Gaps = 134/540 (24%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN-- 299
VI AF+ P+ Y+ K F K L + K+ +F+ RYN+I QR LR+ F
Sbjct: 221 VIDAFEQPRLIYNVAKKHFDRDTSKPSLFPPASHKTLMFQNRYNVIHQRLLRNESFQTPS 280
Query: 300 --------------INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPT 345
I S KL + L+ NH ++LG++S + D T
Sbjct: 281 FQGGKASLQRSTSAIASPQQSYKLTPIANLLGRNRSNH--MLLGLLSISPTGTLAINDLT 338
Query: 346 GIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQILHVDA------------------- 383
G + LDL+ P + IVLV+G Y++ +
Sbjct: 339 GTIALDLTHAKAIPEDGAWFVPGMIVLVDGTYEEDETGSSSRLGGNGGVGGTISGKFIGF 398
Query: 384 -LGFPPPEASKN--SRLYFGNQNIWGGPSPVSLKSVN-------RMTKMEKN-------- 425
+G PPPE S G+ GG V V +M ++E+
Sbjct: 399 TIGHPPPERRHVTLSTAGEGDTTAGGGFGWVDFLGVGSSRALGTKMQRLEQKLLRPPPRS 458
Query: 426 --------NENAMIVILSDVHLDNDKVRNNLCEFI---TSEFQGFVPNS----------- 463
+VIL DVHLD + L + + +SE +G P +
Sbjct: 459 SDTDEPPLPSKGRVVILGDVHLDIPQTLQALKKILSLYSSEPEGCTPMTFILLGSFVSHA 518
Query: 464 --TMATNPCRVQYCS-----QEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
+ + ++Y +L LLS I P + +S S ++
Sbjct: 519 VLSRGGSGGSIEYKEYFDSLAAVLSEYPTLLSTATFIFIPGPNDAWVSAFSSGSS----- 573
Query: 517 IFLIVPKIYVEGTVTSKVL---SPALPKFITSEFQGFVPNSTMATNPCRVQY--CSQEIL 571
+ +P+ V TS+++ + A + + + + +NP RV S E++
Sbjct: 574 --VPLPRKPVPEMFTSRIIRAFASANTEVEKEKGKKGDGEAIWTSNPARVSLFGMSCELV 631
Query: 572 VVREELLSKMCRNCI-----KFP-----EEGDI------------------------SKH 597
V R+++ ++ R + K P E+ DI ++
Sbjct: 632 VFRDDISGRLRRTAVNLNSSKKPTTENDEDEDIDMSPPPSSPPSSTPPPEIDHDIHAARR 691
Query: 598 FVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
+TL+ QG L PLN+ P +W ALS+YPLP +IL D A+ + C +NP
Sbjct: 692 LTKTLLDQGHLSPFPLNIAPQHWDFSNALSIYPLPTAIILCDVDSPAFCLTYEGCHVMNP 751
Score = 39.7 bits (91), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 13/117 (11%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI AF+ P+ Y+ K F K L + K+ +F+ RYN+I QR LR+ F
Sbjct: 221 VIDAFEQPRLIYNVAKKHFDRDTSKPSLFPPASHKTLMFQNRYNVIHQRLLRNESFQ--T 278
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
P+ K ++ T + Q + + LLG+++S H+ LL L+
Sbjct: 279 PSFQGGK----------ASLQRSTSAIASPQQSYKLTPIANLLGRNRSNHM-LLGLL 324
>gi|451850205|gb|EMD63507.1| hypothetical protein COCSADRAFT_26856 [Cochliobolus sativus ND90Pr]
Length = 783
Score = 79.7 bits (195), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 123/554 (22%), Positives = 202/554 (36%), Gaps = 152/554 (27%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VI AF+ P+ Y+ + K F+ K L D K++LFR+RY+++ QR LR+ F
Sbjct: 208 VIGAFEQPKLIYNVNQKHFEKSTAKPSLFPDPLHKTELFRQRYHVVHQRILRNETFQAPT 267
Query: 302 ---------PNADSVKLDWVEYLMSLTNVNHKT----VVLGMISQLKENRYFLEDPTGIV 348
S+ + + + N+ ++ ++LGM++ L D TG +
Sbjct: 268 FSTARSATLSRTGSIATSQMNTITPIANLLGRSGSTHLLLGMLTISATGALSLSDLTGTI 327
Query: 349 QLDLSQTSYHP--GLY-TENCIVLVEGHYKDQILHVD-------------------ALGF 386
LD+ P G Y IVLVEG Y++ ++G
Sbjct: 328 ALDIEHARPIPEKGAYFAPGMIVLVEGSYEEDSGAGSSLGGSGGIGGTIGGKFLCFSVGH 387
Query: 387 PP-----------PEASKNSRL--YFGNQNIWG-GPSPVSLKSVNRMTKMEKNNENAM-I 431
PP E KNS FG + G G + +N++ E A I
Sbjct: 388 PPCERRTATLGGADEVDKNSLAGPAFGWTDFLGVGSQRGTGARMNKIASKLLEPERAHNI 447
Query: 432 VILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILV----VREELL 487
VI SD+HLD + L + + + P++ T+P V Y IL+ + L
Sbjct: 448 VIASDLHLDVPSTLSALRTLLRT----YTPDT---TDPHPV-YPLAIILMGNFSSKASLA 499
Query: 488 SKMCRNCIKFPEEGDISKHVSKN-------------NGEKDIIFLIVPKIYVEGTVTSKV 534
I++ E D V + G+ D P + G T
Sbjct: 500 GVPGTGSIEYKEHFDALASVLADFQPLIAHTTLVLVPGDNDAW----PSAFSAGAATPLP 555
Query: 535 LSPALPKFITSEFQGFVPNSTM-----------------ATNPCRVQY--CSQEILVVRE 575
P +P T+ + V + +NP R+ + E+ ++R+
Sbjct: 556 RKP-IPNMFTTRIRKVVAEANREIWGPGKAKGKEGEVIWTSNPSRLTWFGVKGEMAILRD 614
Query: 576 ELLSKMCRNCIKF---PEEGD--------------------------------------- 593
+LL ++ RN I+F P + D
Sbjct: 615 DLLGRLQRNSIRFNKPPPDADDELPFAPSQQARDLESQDTMDLDLVHPPPPQPKRQQQQQ 674
Query: 594 ----------ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLN 642
I++ RT++SQ L PL+ P++W A+SLYPLP V+L D +
Sbjct: 675 QQSDVDLDTQIARTLTRTILSQSHLSPYPLSSRPLHWDFAHAMSLYPLPTSVVLADAEAP 734
Query: 643 AYTIQNTDCIFINP 656
+ ++ C +NP
Sbjct: 735 PFVVKYFGCTVMNP 748
Score = 45.8 bits (107), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 53/116 (45%), Gaps = 13/116 (11%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI AF+ P+ Y+ + K F+ K L D K++LFR+RY+++ QR LR+ F
Sbjct: 208 VIGAFEQPKLIYNVNQKHFEKSTAKPSLFPDPLHKTELFRQRYHVVHQRILRNETFQ--A 265
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCL 151
P + + + S+ SQ+ + LLG+ S HL L L
Sbjct: 266 PTFSTARSATLSRTGSIAT-----------SQMNTITPIANLLGRSGSTHLLLGML 310
>gi|448104708|ref|XP_004200318.1| Piso0_002903 [Millerozyma farinosa CBS 7064]
gi|448107857|ref|XP_004200949.1| Piso0_002903 [Millerozyma farinosa CBS 7064]
gi|359381740|emb|CCE80577.1| Piso0_002903 [Millerozyma farinosa CBS 7064]
gi|359382505|emb|CCE79812.1| Piso0_002903 [Millerozyma farinosa CBS 7064]
Length = 658
Score = 79.3 bits (194), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 117/487 (24%), Positives = 193/487 (39%), Gaps = 89/487 (18%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLV-DKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF- 297
F I+ P + +D K+F L+ KL + F RY++IR R R+S F
Sbjct: 127 FRFINPDKQPNYFFDHQRKQFSLIPTPSSKLTFQTKNAVSYFNRRYHLIRDRLSRNSSFQ 186
Query: 298 ----NNINPNADSVKLDWVEYLMSLTNV----NHKTVVLGMISQLKENRYFLEDPTGIVQ 349
++I+ SV + + L + NV K ++ G++SQ E Y LED + +
Sbjct: 187 KPSFSSISSIQKSVS-NQINELTLIKNVLGRDGSKFLLFGLLSQDAEGNYILEDSSDYII 245
Query: 350 LDLSQTSYHPG--LYTENCIVLVEGHYKDQI------------LHVDALGFPPPEASKNS 395
L+L Q +Y Y V+VEG Y +V+ LG PP E + S
Sbjct: 246 LNLKQ-AYKSSDCFYCLGMFVIVEGIYSATTNVSTNSNVISGCFYVNYLGHPPAERREVS 304
Query: 396 RLYFGNQNIWG-----GPSPVSLKSVNRMTK--------MEKNN-ENAMIVILSDVHLDN 441
+GN + G + +S + R+ K MEK N E+ ++++ SD LDN
Sbjct: 305 LEAYGNLDFMGINRDIEDTHISSSHIFRINKNLRKKLLSMEKENVEHKLLILGSDCFLDN 364
Query: 442 DKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEG 501
K L + ++ + NS A + + + + N +
Sbjct: 365 AKFMEGLKKLLSKIEDSIIENSDNAPLALVLMGSFTSRPLTPTDSSTATISNSEDYKNGF 424
Query: 502 D-ISKHVSK-NNGEKDIIFLIVP-------KIYVEGTVTSKVLSP-ALPKFITSEFQGFV 551
D ++ +SK N +++P +Y G+ + ++PK + + +
Sbjct: 425 DNLASILSKFKNIVSRTKIVLIPGPHDPWQALYTLGSSNLNIFPQFSIPKIFLNRLEKLL 484
Query: 552 P--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE------------------ 591
P N + NP RV Y +QEI++ ++ L K+ RN I F +
Sbjct: 485 PKGNLIIGWNPIRVNYLTQEIVIFKDNLYEKLKRNDIVFESDIQREVEKVEKEKEKERIS 544
Query: 592 -GDIS------------------KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP 632
G IS + V+ L+ QGTL NL + + AL + PLP
Sbjct: 545 HGKISLDDIDTNQPHVSYKTRQARKMVKALLDQGTLQPFLSNLKIINTACDYALRMEPLP 604
Query: 633 DLVILGD 639
+VIL D
Sbjct: 605 SVVILSD 611
>gi|398396444|ref|XP_003851680.1| hypothetical protein MYCGRDRAFT_86683 [Zymoseptoria tritici IPO323]
gi|339471560|gb|EGP86656.1| hypothetical protein MYCGRDRAFT_86683 [Zymoseptoria tritici IPO323]
Length = 782
Score = 79.0 bits (193), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 124/555 (22%), Positives = 205/555 (36%), Gaps = 153/555 (27%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
V+SAFD P+F YD D K F + K + K+++F+ERYNII+QR R+ +F +
Sbjct: 207 VVSAFDQPRFTYDVDKKHFLSISTKPSMFPSPSHKTRVFKERYNIIQQRLRRNPIFQAPS 266
Query: 302 PNADS-----------------VKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDP 344
+A KL + L+ +H +LGM+ L D
Sbjct: 267 FSAGQNNGVVRRKGKDAAAREFYKLTPIANLLGRGGSSH--TLLGMLVIAPTGTLALNDL 324
Query: 345 TGIVQLDLSQTSYHPGLYTE-----NCIVLVEGHYKDQILHVDA---------------- 383
+G + LDL + G ++ IVLV+G Y++ +
Sbjct: 325 SGSISLDLQHATPIGGSVSDAYFCPGMIVLVDGVYEEDWAGAGSSGLGNTGGVGGSIGGR 384
Query: 384 -----LGFPPPE----------ASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEK---- 424
+G PP E AS + FG + G S ++ + RM K+E+
Sbjct: 385 FVGFEIGGPPVEKRDVSLGINLASGDQGGGFGWIDFLGQGSDRAVGA--RMKKLERRLMG 442
Query: 425 ------NNENAMIVILSDVHLDNDK----VRNNLCEFITSEF--QGFVPNSTMATNPCRV 472
+ VILS+V LD +R L ++ T+E F+ ++
Sbjct: 443 PEAETNTTTSQKTVILSEVTLDQPSTLVALRKVLEQYATAEQPPMAFILTGDFSSKAVMA 502
Query: 473 QYCSQEILVVREELLSKMCRNCIKFPE----------EGDISKHVSKNNGEKDIIFLIVP 522
+ I +EL +++ FP GD S + ++P
Sbjct: 503 GAGTGSIEY--KELFNELAALLADFPTLLRSSTWIFVPGDNDPWASSFSAGAST---LIP 557
Query: 523 KIYVEGTVTSKVLSPALPKFITSEFQ------GFVPNSTMAT-NPCRVQY--CSQEILVV 573
+ V T+++ F T++ + G V + T NP R+ + E+L+
Sbjct: 558 REGVPELFTNRIRR----AFATAKTELGAAKKGEVDGEAIWTSNPARLSLFGPAHEVLIF 613
Query: 574 REELLSKMCRNCIKF--------------------------------------------- 588
R+++ S+ RN I+
Sbjct: 614 RDDISSRFRRNAIRIGQAVQDEVPQHPQTDADNDITMSGALPSTEDYIPENTPVPLPGPL 673
Query: 589 ---PEEGDI--SKHFVRTLVSQGTLVSLPLNLCPVYWSQY-GALSLYPLPDLVILGD-QL 641
PE + +K + +L+ Q TL P + PV+W ALSLYPLP ++L D +
Sbjct: 674 AATPESTSLASAKRLILSLLPQSTLSPFPQTIRPVHWDYAPSALSLYPLPHTLVLADAEE 733
Query: 642 NAYTIQNTDCIFINP 656
A+ I C +NP
Sbjct: 734 AAFCITYEGCHVVNP 748
Score = 54.7 bits (130), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/57 (43%), Positives = 36/57 (63%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
V+SAFD P+F YD D K F + K + K+++F+ERYNII+QR R+ +F
Sbjct: 207 VVSAFDQPRFTYDVDKKHFLSISTKPSMFPSPSHKTRVFKERYNIIQQRLRRNPIFQ 263
>gi|354545724|emb|CCE42452.1| hypothetical protein CPAR2_200950 [Candida parapsilosis]
Length = 669
Score = 79.0 bits (193), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 111/503 (22%), Positives = 206/503 (40%), Gaps = 108/503 (21%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKL-VDKKR-----KLCADSDAKSKLFRERYNIIRQR 290
E F +S + P+ +D K F + + K+R +L ++ + + Y +I R
Sbjct: 127 EDYFQFVSPMNQPRSVFDKSRKHFDVYLTKERLPLLSRLTLNTKSLVESQNNHYYLIMDR 186
Query: 291 TLRHSLFNNIN----PNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKENRY 339
R+ F + N +S+ +D + +T + K ++ G++S+ + Y
Sbjct: 187 LSRNENFQKASMTSISNLNSLTIDGIGKNNEITLIKNMLGRDGQKFLLFGLLSKNSTDEY 246
Query: 340 FLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHY----------KDQI---LHVDALG 385
LED TG ++L+L+Q + G Y VLVEG Y +D I +V +
Sbjct: 247 ILEDATGYIELNLNQAVKNQGSFYCLGMFVLVEGIYSASGGHLNQKQDYIGGCFYVSNIA 306
Query: 386 FPPPEASKNSRLYFGNQNIWG--------GPSPVSLKSVNR--MTKMEKNNENAMIVIL- 434
PP E S +G+ + G G + + R M ++EK+ ++ I+++
Sbjct: 307 QPPAERRDKSLDVYGHVDFLGIHKHMVPAGDKAIKVPKAFRKKMVQLEKSLQSHRIIMMG 366
Query: 435 SDVHLDNDK-----------VRNNLCEFITSE-FQGFVP-----NSTMATNPCRVQYCSQ 477
SD++LD++K + N++ E + SE Q ++P + + P +
Sbjct: 367 SDLYLDSNKTLQAMQKFFHRLENSIIEALDSEETQSYIPLALVFTGSFTSRPLTSTNSTS 426
Query: 478 EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP-------KIYVEGTV 530
+ + EL K +S+H N + +++P Y G+
Sbjct: 427 DANLSNSELYKGNFDQFAKI-----LSEHP---NIVQRCKVVLIPGDNDPWQSTYSLGSS 478
Query: 531 TSKVL-SPALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK 587
P++PK + + +P N +A NP R+ Y SQE+++++++L+SK RN +
Sbjct: 479 CLNAFPQPSIPKVFVNRLEKLLPRGNLILAWNPTRLSYLSQELVIIKDKLMSKFKRNGLM 538
Query: 588 FPEEGDISKH-------------------------------FVRTLVSQGTLVSLPLNLC 616
FP E + K V+TL+ QGTL +L
Sbjct: 539 FPLEIEQEKENVEELNNVERIEKLIQNKDERIPNKTKQARMLVKTLLDQGTLQPFKKDLK 598
Query: 617 PVYWSQYGALSLYPLPDLVILGD 639
+ L + PLP+ ++L D
Sbjct: 599 VINTQFEHCLRVEPLPNAIVLND 621
>gi|448525237|ref|XP_003869085.1| Dpb2 subunit of DNA polymerase II (DNA polymerase epsilon) [Candida
orthopsilosis Co 90-125]
gi|380353438|emb|CCG22948.1| Dpb2 subunit of DNA polymerase II (DNA polymerase epsilon) [Candida
orthopsilosis]
Length = 670
Score = 78.2 bits (191), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 109/508 (21%), Positives = 201/508 (39%), Gaps = 117/508 (23%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKL-VDKKR-----KLCADSDAKSKLFRERYNIIRQR 290
E F +S + P+ +D K F + + K+R KL ++ ++ + Y +I R
Sbjct: 127 EDYFQFVSPLNQPRSLFDKSRKHFDVYLTKERLPFLSKLTLNTKSQVESQNNHYFLIMDR 186
Query: 291 TLRHSLFNNIN----PNADSVKLDWVEYLMSLTNV-------NHKTVVLGMISQLKENRY 339
R+ F + N +S+ +D + +T + K ++ G++S+ + Y
Sbjct: 187 LSRNENFQKASMTSISNLNSLTIDGIGKNNEITLIKNMLGRDGQKFLLFGLLSKNSTDEY 246
Query: 340 FLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEG-------------HYKDQILHVDALG 385
LED TG ++L+L+Q + G Y VL EG Y +V L
Sbjct: 247 ILEDTTGYIELNLNQAVKNQGSFYCIGMFVLAEGIYSASGGNLNQKQDYMGGCFYVSNLA 306
Query: 386 FPPPEASKNSRLYFGNQNIWGGPS---PVSLKSVN-------RMTKMEKNNENAMIVIL- 434
PP E S +G+ + G P K+V ++ ++EK+ +N IV++
Sbjct: 307 QPPAERRDKSLDVYGHLDFLGIHKHMVPTGDKAVKFPKPFRKKLLQLEKSLQNHKIVMMG 366
Query: 435 SDVHLDNDKVRNNLCEFI------------TSEFQGFVP-----NSTMATNPCRVQYCSQ 477
SD++LD++K + +F + E Q ++P + + P +
Sbjct: 367 SDLYLDSNKTLQAMQKFFHRLENTIIEALDSEETQSYIPLALIFTGSFTSRPLTSTNSTS 426
Query: 478 EILVVREEL----LSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP-------KIYV 526
+ + EL + + ++P N + +++P Y
Sbjct: 427 DANLSNSELYKGNFDQFAKMLSEYP------------NIVQRCKIVLIPGDNDPWQSTYS 474
Query: 527 EGTVTSKVLSPA-LPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCR 583
G+ A +PK + + +P N +A NP R+ Y SQE+++++++L+SK R
Sbjct: 475 LGSSCLNTFPQASIPKVFVNRLENLLPRGNLILAWNPTRLSYLSQELVIIKDKLMSKFKR 534
Query: 584 NCIKFPEEGD--------------------------------ISKHFVRTLVSQGTLVSL 611
N + FP E D ++ V+TL+ QGTL
Sbjct: 535 NDLMFPLELDQIHDDGVEELNDKERIDILIQSKDERIPNKTRQARKLVKTLLDQGTLQPF 594
Query: 612 PLNLCPVYWSQYGALSLYPLPDLVILGD 639
+L V L + PLP+ ++L D
Sbjct: 595 KKDLKVVNTQFEHCLRVEPLPNAIVLND 622
>gi|452840107|gb|EME42045.1| hypothetical protein DOTSEDRAFT_81053 [Dothistroma septosporum
NZE10]
Length = 788
Score = 77.8 bits (190), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 128/559 (22%), Positives = 205/559 (36%), Gaps = 157/559 (28%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
V+SAF+ P+ YD D K F + K + K+ +FRERYNII QR LR+ F
Sbjct: 210 VVSAFEQPRLTYDADKKHFLSISAKPTMFPLPSHKTTIFRERYNIIHQRLLRNPAFQ--A 267
Query: 302 PNADSV------------------KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLED 343
P+ SV K+ + L+ + H ++LGM+ L D
Sbjct: 268 PSMSSVQPKLSRRDKNSALQRQFYKITPIANLLGRGSTAH--LLLGMLVIAPTGTLALND 325
Query: 344 PTGIVQLDLSQT-SYHPG--LYTENCIVLVEGHYKDQILHVDA----------------- 383
P+G + LDL S G + IVLV+G Y++ +
Sbjct: 326 PSGSISLDLQHAGSMQEGEPYFCPGMIVLVDGVYEEDWTGAGSSGLGNTGGVGGTIGGRF 385
Query: 384 ----LGFPPPE----------ASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEK----- 424
+G PP E + + FG + G S ++ S RM ++E+
Sbjct: 386 VGFEIGGPPVEKRDLALGINVKADDLGGGFGWTDFLGQGSERAVGS--RMRRLEQRLVGS 443
Query: 425 ------NNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNST---MATNPCRVQYC 475
+ E MI+I S+V+LDN + + L + + G P T M +
Sbjct: 444 EAELSEDVERKMIMI-SEVNLDNPVILSGLRKVLEHYAAGDQPPMTFVLMGDFSSKAAMA 502
Query: 476 SQEILVVR-EELLSKMCRNCIKFPE----------EGDISKHVSKNNGEKDIIF--LIVP 522
+ +EL +++ FP GD S + + VP
Sbjct: 503 GSGTGSIEYKELFNELAAVMADFPALLRKSTWVFVPGDHDAWASAFSAGASTVAPRAAVP 562
Query: 523 KIYV----EGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQY--CSQEILVVREE 576
++ T+K S AL K E G + TNP R+ + E+++ R++
Sbjct: 563 DLFTNRIKRAFATAKTESRALKK---DEMDG---EAIWTTNPARLSMFGPAHEVVLFRDD 616
Query: 577 LLSKMCRNCIKF----------PE----EGD----------------------------- 593
++ RN ++ PE EG+
Sbjct: 617 FADRLRRNAVRIGKAAKAEGQRPEAASVEGEDIIMSGALPSTEDVVQVDSQMINSTAVDS 676
Query: 594 ------ISKHF--------VRTLVSQGTLVSLPLNLCPVYWS-QYGALSLYPLPDLVILG 638
+S+ F + +L+ Q TL PL + P +W ALSLYPLP ++L
Sbjct: 677 PMTEVPVSEPFSIQEAKRLILSLLPQSTLSPFPLTVRPTHWDYTSSALSLYPLPHTLVLA 736
Query: 639 DQLN-AYTIQNTDCIFINP 656
D + ++ + C INP
Sbjct: 737 DAGSPSFALTFEGCHVINP 755
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/154 (27%), Positives = 66/154 (42%), Gaps = 18/154 (11%)
Query: 3 LHRDNPSCTYDLIEFTTNECCRTEINSEEQ----IFSVISAFDIPQFDYDPDLKKFKLVD 58
LHR+ ++ L T + E + V+SAF+ P+ YD D K F +
Sbjct: 175 LHREG--SSFGLSGLTVDSPAPEEHEDASKNPRSWLKVVSAFEQPRLTYDADKKHFLSIS 232
Query: 59 KKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHK 118
K + K+ +FRERYNII QR LR NP + + V+ +S + N
Sbjct: 233 AKPTMFPLPSHKTTIFRERYNIIHQRLLR-------NPAFQAPSMSSVQPKLSRRDKNS- 284
Query: 119 TVVLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
+ Q + + LLG+ + HL L L+
Sbjct: 285 ----ALQRQFYKITPIANLLGRGSTAHLLLGMLV 314
>gi|222640703|gb|EEE68835.1| hypothetical protein OsJ_27613 [Oryza sativa Japonica Group]
Length = 236
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 13/145 (8%)
Query: 312 VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ----TSY-------HPG 360
+ + SL + ++G+ISQL+E +++LED TG V +DLS TS+ G
Sbjct: 9 ITSIQSLIGCTGRRWIMGVISQLEERQFYLEDLTGAVPIDLSNANSITSFLSTEHKITSG 68
Query: 361 LYTENCIVLVEGH-YKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRM 419
+ EN ++L EG + I V+ GFPP E + S + +GG + ++V R+
Sbjct: 69 FFVENTVILAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGGGVIAAEETV-RL 127
Query: 420 TKMEKNNENAMIVILSDVHLDNDKV 444
+ +EK N M VILSDV LD+ ++
Sbjct: 128 STLEKKAMNDMFVILSDVWLDSSEL 152
Score = 40.0 bits (92), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFI 654
S V T+ Q L LPL + P+ W+ L LYP P ++LGD+ +
Sbjct: 149 SSELVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVLGDKSEQKAFKYAGITCF 208
Query: 655 NP 656
NP
Sbjct: 209 NP 210
>gi|242765491|ref|XP_002340985.1| DNA polymerase epsilon subunit B, putative [Talaromyces stipitatus
ATCC 10500]
gi|218724181|gb|EED23598.1| DNA polymerase epsilon subunit B, putative [Talaromyces stipitatus
ATCC 10500]
Length = 746
Score = 77.4 bits (189), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 117/534 (21%), Positives = 191/534 (35%), Gaps = 128/534 (23%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR-HSLFNNI 300
VI A+D P+ Y+P+ K F+ K D + +R+R ++R + + SL NN
Sbjct: 190 VIDAYDQPRLTYNPNKKHFETSINKPSFFPDPSHQITFYRDR--LLRNESFQASSLLNN- 246
Query: 301 NPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP- 359
N + K+ + L+ H + LG++S L D TG + LDLS+T P
Sbjct: 247 --NKQTYKITPIANLIGRGGSRH--MCLGLLSVSPAGELSLTDLTGSIMLDLSETVPIPR 302
Query: 360 ---GLYTENCIVLVEGHY-KDQILHVDALG-------------------FPPPEASK--- 393
+ +VLVEG Y +++I+ LG PP E +
Sbjct: 303 GNGAWFCPGMMVLVEGIYEEEEIVKGSVLGGNSGIGGAIGGKLMGITIAGPPCEKREVTL 362
Query: 394 --NSRLYFGNQNIWGGPSPVSLKSVN-------RMTKME------------KNNENAMIV 432
NS G+ GG V V RM KME + N IV
Sbjct: 363 GMNSIDSKGDIGTSGGFGWVDFLGVGSERAQGARMRKMEHKSLRQVAGTEGQRNGRCNIV 422
Query: 433 ILSDVHLDNDKVRNNLCE-----------------FITSEFQGFVP-NSTMATNPCRVQY 474
IL ++HLDN + + L + F G V + N +
Sbjct: 423 ILGEIHLDNTRTLDALKSVFGIYNALPFEELPLAFVMIGNFIGKVGFGQSNGGNSIEYKE 482
Query: 475 CSQEILVVREELLSKMCRNCIKF-PEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSK 533
C + V + + + F P + D I VP+++ + +
Sbjct: 483 CFDSLASVLSDFSALLSHTTFIFVPGDNDPWASTFTVGASSAIPRKGVPELFT--SRVKR 540
Query: 534 VLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS--QEILVVREELLSKMCRNCIKFPEE 591
+ A S + + +NP R+ EI+V R+++ ++ RN I+F
Sbjct: 541 AFTAANNDAGNSASKSTPGEAIWTSNPSRISLFGPVHEIVVYRDDISGRLRRNSIRFCNT 600
Query: 592 GD------------------------------------------------ISKHFVRTLV 603
GD ++ +T++
Sbjct: 601 GDNDLQEPQISDGATQENDENMIIDNDDNDNNKAQKNSPIPTKQPPPSYLAAQKLSKTIL 660
Query: 604 SQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
QGTL P+ PV W ++ LYPLP +IL D ++ A+++ C +NP
Sbjct: 661 DQGTLSPFPITSKPVLWDYASSIQLYPLPTALILADSEVAAFSVSYEGCNVLNP 714
>gi|430813107|emb|CCJ29523.1| unnamed protein product [Pneumocystis jirovecii]
Length = 503
Score = 77.0 bits (188), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 81/368 (22%), Positives = 154/368 (41%), Gaps = 47/368 (12%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 296
++ F + AF P++ +D K FK D+ K+ ++ K ++RER+ +I+QR L +
Sbjct: 143 KEFFVYVDAFTQPKYVFDMTHKLFKRSDELPKIFGNASHKISIYRERFYLIKQRLLSNPA 202
Query: 297 FNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTS 356
F +W + + ++LGMIS + + +LED + L+ +
Sbjct: 203 FQEPGFYGLIFHKEW-------HKIGKEFMLLGMISYGPDGKLWLEDTDDRIMLETDEAI 255
Query: 357 YHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKS 415
G CI+L +G Y ++ HV G PP E S F + + G K+
Sbjct: 256 NGGGWVVPGCIILADGIYLENGAFHVFVFGHPPCEPKHLSEKLFEHVDFLG-------KN 308
Query: 416 VNRMTKMEKNNENAMI-----VILSDVHLDN----DKVRN--NLCEFITSEF-QGFVPNS 463
+ +TK +E A + V +DV LD+ +R N+ E F + V
Sbjct: 309 YDELTKKRLKDEEAKLDHIRFVFAADVMLDDISTMKALRKMLNMYEIRDDIFPEAIVLMG 368
Query: 464 TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPK 523
+ + P S + + L + + FP+ S F+++P
Sbjct: 369 SFISAPFHNNGFSADY----KALFNSLAFLLESFPKLTQKS------------TFILLPG 412
Query: 524 ---IYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
+ +G + + +PK T+ + + A+NP R+ Y +Q+I++ R+ + +
Sbjct: 413 PNDPWAQGGIPL-LPQKGIPKVFTNRIRKLCKHVIFASNPSRLLYFTQDIVLYRDNTMER 471
Query: 581 MCRNCIKF 588
+ R+ + F
Sbjct: 472 LRRHSLCF 479
Score = 40.8 bits (94), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 7/96 (7%)
Query: 31 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 90
++ F + AF P++ +D K FK D+ K+ ++ K ++RER+ +I+QR L +
Sbjct: 143 KEFFVYVDAFTQPKYVFDMTHKLFKRSDELPKIFGNASHKISIYRERFYLIKQRLLSNPA 202
Query: 91 FNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMIS 126
F +W + + ++LGMIS
Sbjct: 203 FQEPGFYGLIFHKEW-------HKIGKEFMLLGMIS 231
>gi|328726049|ref|XP_003248726.1| PREDICTED: DNA polymerase epsilon subunit 2-like, partial
[Acyrthosiphon pisum]
Length = 195
Score = 76.6 bits (187), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 50/163 (30%), Positives = 88/163 (53%), Gaps = 15/163 (9%)
Query: 208 IPVSNREQNNIMNWLKLSSE---CCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD 264
+ VS+ NI+ + LS CC +I ++E I V A+ +P++ Y P KKF+ +
Sbjct: 30 VRVSSTNDGNIVTYELLSKALKFCCNLQILNDEDILHVTPAYKLPRYRYCPTTKKFQRIK 89
Query: 265 KKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNI---NPNADSVKLDWVEYLMSL--- 318
+ + D+ +K + +RY +IRQR R ++ P K+ V+YL+S
Sbjct: 90 SEISMFGDAQSKIAQYVDRYTVIRQRMARIKTTSDGTLNQPLTIGDKIRDVDYLLSSGAC 149
Query: 319 -----TNVNHKTVVLGMISQLKE-NRYFLEDPTGIVQLDLSQT 355
++ ++ ++LG++ QLKE R++LEDPTG + LD++ T
Sbjct: 150 RKFDHSSKSNSILLLGVLVQLKEGGRHYLEDPTGAIPLDITAT 192
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/137 (27%), Positives = 69/137 (50%), Gaps = 11/137 (8%)
Query: 6 DNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA 65
D TY+L+ CC +I ++E I V A+ +P++ Y P KKF+ + + +
Sbjct: 37 DGNIVTYELLSKALKFCCNLQILNDEDILHVTPAYKLPRYRYCPTTKKFQRIKSEISMFG 96
Query: 66 DSDAKSKLFRERYNIIRQRTLRHSLFNNI---NPNADSVKLDWVEYLMSL--------TN 114
D+ +K + +RY +IRQR R ++ P K+ V+YL+S ++
Sbjct: 97 DAQSKIAQYVDRYTVIRQRMARIKTTSDGTLNQPLTIGDKIRDVDYLLSSGACRKFDHSS 156
Query: 115 VNHKTVVLGMISQLKEN 131
++ ++LG++ QLKE
Sbjct: 157 KSNSILLLGVLVQLKEG 173
>gi|146421596|ref|XP_001486743.1| hypothetical protein PGUG_00120 [Meyerozyma guilliermondii ATCC
6260]
Length = 639
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 122/497 (24%), Positives = 198/497 (39%), Gaps = 85/497 (17%)
Query: 235 SEEQI-----FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQ 289
SEE+I F VI+ P + +D K+F L +K L F RY+++
Sbjct: 113 SEEEINWKDFFKVINPPQQPNYRFDRQRKQFSL-EKPSTLSDAVTTNISYFNSRYHLLAD 171
Query: 290 RTLRHSLFN-----NINPNADSVKLDWVEYLMSLTNVNH-KTVVLGMISQLKENRYFLED 343
R R+ F + + SV+L + + ++ + K ++ G++S+ Y LED
Sbjct: 172 RLSRNENFQKSSLASFSAATHSVQLTEITLIKNVLGRDGLKFILFGLLSKNANGDYILED 231
Query: 344 PTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYK------------DQILHVDALGFPPPE 390
T ++L+LSQ G Y V+VEG Y HV +G PP E
Sbjct: 232 ATDHIELNLSQAHKTEGSYYCSGMFVVVEGIYSASGGTLSSANLIGGCFHVSHIGQPPAE 291
Query: 391 ASKNSRLYFGNQNIWGGPSPVSLK----SVNRMTKMEKNNENAMIVIL-SDVHLDNDKVR 445
S FGN + G S S K R+ +EK+ + IV L ++ LD+ +V
Sbjct: 292 RRDLSLENFGNLDFVGINSDTSTKLNKTLKKRLASIEKSLVDHKIVFLGANCFLDDARVL 351
Query: 446 NNLCEFITSEFQGFVPNSTMATNPCRVQYCS--QEILVVREELLSKMCRNCIKFPEEGDI 503
L S F+ + + A V Y S + L+S + + +
Sbjct: 352 EGLKRLF-STFERDIVDGEKAPLAI-VMYGSFISGPMTATSTLISTISNSESYKNNFDEF 409
Query: 504 SKHVSKNNGE-KDIIFLIVP-------KIYVEGTVTSKVL-SPALPKFITSEFQGFVP-- 552
+ +SK +D F+++P Y G+ L +P S + +P
Sbjct: 410 TSILSKFKYLIQDTKFVMIPGPNDPWQATYSLGSSNLNALPQQPIPSIFASRLERLLPKG 469
Query: 553 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE------------------GDI 594
N +A NP R+ Y SQEI+++R+++ K+ RN I F + G I
Sbjct: 470 NLILAFNPLRLCYLSQEIVMLRDDITPKLKRNDIVFNHDLELEKQRLDRDIEREANGGTI 529
Query: 595 S------------------KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVI 636
S + V+TL+ QGTL +L + + AL + PLP ++
Sbjct: 530 SLDTIDTSEQHVSTKVKQARKLVKTLLDQGTLQPFLRDLRLIDTTYDYALRIEPLPSAIV 589
Query: 637 LGDQLNAYTIQNTDCIF 653
L D T +N D +
Sbjct: 590 LNDS----TFENFDVTY 602
>gi|302845280|ref|XP_002954179.1| hypothetical protein VOLCADRAFT_94959 [Volvox carteri f.
nagariensis]
gi|300260678|gb|EFJ44896.1| hypothetical protein VOLCADRAFT_94959 [Volvox carteri f.
nagariensis]
Length = 265
Score = 75.5 bits (184), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 49/132 (37%), Positives = 70/132 (53%), Gaps = 9/132 (6%)
Query: 245 AFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN--- 301
AF +P +DP +K L K R + A +++K +L+ +R +I+QR R +F N
Sbjct: 69 AFSVPHLAFDPVQRKLFLNTKPRHIHASAESKHQLYLQRLLLIQQRLQRSRMFQQSNLLL 128
Query: 302 PNADS----VKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSY 357
PN+ S V+L ++ LM + V VLG IS+ ++ RY LED TG V LDLS
Sbjct: 129 PNSSSRGHSVQLTDLQSLMGVFGVTR--YVLGCISRAEDGRYVLEDTTGAVPLDLSAAET 186
Query: 358 HPGLYTENCIVL 369
G YT VL
Sbjct: 187 AAGFYTGFSGVL 198
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 32/100 (32%), Positives = 53/100 (53%), Gaps = 9/100 (9%)
Query: 39 AFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN--- 95
AF +P +DP +K L K R + A +++K +L+ +R +I+QR R +F N
Sbjct: 69 AFSVPHLAFDPVQRKLFLNTKPRHIHASAESKHQLYLQRLLLIQQRLQRSRMFQQSNLLL 128
Query: 96 PNAD----SVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
PN+ SV+L ++ LM + V VLG IS+ ++
Sbjct: 129 PNSSSRGHSVQLTDLQSLMGVFGVTR--YVLGCISRAEDG 166
>gi|150951339|ref|XP_001387649.2| DNA-directed DNA polymerase epsilon, subunit B [Scheffersomyces
stipitis CBS 6054]
gi|149388511|gb|EAZ63626.2| DNA-directed DNA polymerase epsilon, subunit B [Scheffersomyces
stipitis CBS 6054]
Length = 680
Score = 75.5 bits (184), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 120/517 (23%), Positives = 206/517 (39%), Gaps = 123/517 (23%)
Query: 254 DPDLKKFKLVDKKRK---LCADSDAKSK---------------LFRERYNIIRQRTLRH- 294
+PD + + DK RK + +++KSK LF RY+II R R+
Sbjct: 141 NPDQQPHCVFDKSRKQFKVSPSTNSKSKSLIGTLPNNLQNTVELFNNRYHIIYDRLSRNE 200
Query: 295 ----SLFNNINPNADSVKLDWVEYLMSLTNV----NHKTVVLGMISQLKENRYFLEDPTG 346
S F++I+ S+ + + NV K ++ G++S+ + LED T
Sbjct: 201 NFQKSSFSSISTINKSLHNGSANEITLIKNVLGRDGSKFILCGLLSKDANDSCILEDSTD 260
Query: 347 IVQLDLSQTSYHPG-LYTENCIVLVEG-------------HYKDQILHVDALGFPPPEAS 392
++L+L+QT G Y V+VEG +Y HV +G PP E
Sbjct: 261 YIELNLTQTYKTQGSFYCPGMFVIVEGIYSASGGSSNQSTNYIGGCFHVSNIGHPPAERR 320
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVN------------RMTKMEKNNENAMIVIL-SDVHL 439
S +GN + G + + N ++ +EK+ +V+L S+ HL
Sbjct: 321 DASSENYGNLDFLGIHKQIGNSTANDKVLKINKYFRRKLATLEKSLVGHKLVLLGSECHL 380
Query: 440 DN-----------DKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLS 488
DN K+ N++ E + SE G VP + + T S L L+S
Sbjct: 381 DNFKILDGLKKLLHKLENSIIEIMESE-DGHVPLALVMTGSF-----SSSPLTTTNSLVS 434
Query: 489 KMCRNCIKFPEEGDISKHVSKN--NGEKDIIFLIVPK--------IYVEGTVTSKVLSPA 538
+ N + D ++ N N K +++P + G+ + +
Sbjct: 435 NIS-NSETYKSNFDNFANILSNFPNVIKTCKLVLIPGKNDPWQSTYSLGGSSLNCFPQKS 493
Query: 539 LPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP------- 589
+P+ S + +P N ++ NP R+ Y SQEI+++++EL++KM RN I F
Sbjct: 494 IPRLFVSRLERLLPKGNLILSWNPARISYLSQEIVILKDELMNKMKRNDIIFANDLEEEK 553
Query: 590 ----------EEGDI-------------------SKHFVRTLVSQGTLVSLPLNLCPVYW 620
EE I ++ V+T++ QG L L +
Sbjct: 554 ENLEKVLAQSEEDRINNLVKGGVTGEHIPIKIKHARKLVKTILDQGNLQPF-LRETKLIN 612
Query: 621 SQYG-ALSLYPLPDLVILGD-QLNAYTIQNTDCIFIN 655
+Y AL + PLP +++L D + + + C +N
Sbjct: 613 PEYDYALRIEPLPTVMVLNDANFDNFEVTYNGCKVVN 649
>gi|189210980|ref|XP_001941821.1| DNA polymerase epsilon subunit B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187977914|gb|EDU44540.1| DNA polymerase epsilon subunit B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 775
Score = 73.2 bits (178), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 115/545 (21%), Positives = 198/545 (36%), Gaps = 140/545 (25%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
VI AF+ P+ Y+ K F+ K L + K++LFR+RY+I+ QR LR+ F
Sbjct: 207 VIGAFEQPKLIYNFTQKHFEKSATKPSLFPNPSHKTELFRQRYHIVHQRILRNETFQAPT 266
Query: 298 ------NNINPNADSVKLDWVEYLMSLTNVNHKT----VVLGMISQLKENRYFLEDPTGI 347
+ +N S+ + + + N+ +T ++LGM++ L D TG
Sbjct: 267 FSTARSSTLN-RTGSIATSQMNSITPIANLLGRTGSTHLLLGMLTVSATGALSLSDLTGT 325
Query: 348 VQLDLSQTSYHP--GLY-TENCIVLVEGHYKDQILHVDAL-------------------G 385
+ LD+ P G Y IV+VEG Y++ L G
Sbjct: 326 ITLDIQHARPIPENGAYFAPGMIVIVEGSYEEDSGTTSTLGGNGGIGGTIGGKFLAFSVG 385
Query: 386 FPP-----------PEASKNSRL--YFGNQNIWG-GPSPVSLKSVNRMTKMEKNNENAM- 430
PP E KNS FG + G G + +N++ + ++A
Sbjct: 386 HPPCERRTATLGGAEEVDKNSLAGPAFGWTDFLGVGSQRATGTRMNKIAAKLLDPDHAHN 445
Query: 431 IVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
+VI SD+HLD + L + + + P+ T A + + L
Sbjct: 446 VVIASDLHLDVPSTLSALRTLLRT----YTPDPTDAHPVYPLAIILMGNFSSKASLAGVP 501
Query: 491 CRNCIKFPEEGDISKHVSKN-------------NGEKDIIFLIVPKIYVEGTVTSKVLSP 537
+ I++ E D V + G+ D P + G T +
Sbjct: 502 GTSSIEYKEHFDALASVLADFQPLIAHTTLVLVPGDNDAW----PSAFSAGAAT-PLPRK 556
Query: 538 ALPKFITSEFQGFVPNSTM-----------------ATNPCRVQY--CSQEILVVREELL 578
+P TS + V + +NP R+ + E+ ++R+++
Sbjct: 557 QIPTMFTSRIRKVVAEANREIWGAGKAKGKEGEVIWTSNPSRLSWFGVKGEMAIIRDDVA 616
Query: 579 SKMCRNCIKF----PEEGD----------------------------------------- 593
S++ RN I+F P+ D
Sbjct: 617 SRLQRNAIRFNKPPPDVDDEMPYAPSTQAQDAAQQDAMDLDLPRPPPKPQPQQDPIDPDT 676
Query: 594 -ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ-LNAYTIQNTDC 651
I++ RT++SQ L P + P++W L+LYPLP ++L D ++ ++ C
Sbjct: 677 QIARALTRTILSQSHLSPYPFSSRPLHWDYGHVLNLYPLPTCLVLADSGAPSFVVKYFGC 736
Query: 652 IFINP 656
+NP
Sbjct: 737 TVLNP 741
Score = 44.3 bits (103), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI AF+ P+ Y+ K F+ K L + K++LFR+RY+I+ QR LR+ F
Sbjct: 207 VIGAFEQPKLIYNFTQKHFEKSATKPSLFPNPSHKTELFRQRYHIVHQRILRNETFQ--A 264
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCL 151
P + + + S+ SQ+ + LLG+ S HL L L
Sbjct: 265 PTFSTARSSTLNRTGSIAT-----------SQMNSITPIANLLGRTGSTHLLLGML 309
>gi|440791781|gb|ELR13019.1| DNA polymerase epsilon subunit B protein [Acanthamoeba castellanii
str. Neff]
Length = 630
Score = 72.4 bits (176), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 37/126 (29%), Positives = 58/126 (46%), Gaps = 12/126 (9%)
Query: 548 QGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP-------EEGDIS----- 595
+G V + +NPCRV+Y QE+L R ++ K R + P + G +
Sbjct: 485 EGVVADVIRGSNPCRVKYVGQELLFYRGDMQDKFLRYALAVPPADGDDLDAGTVDDVPRF 544
Query: 596 KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFIN 655
+ RT+ G L P PVYW AL + PLPDL++L D + + + + +N
Sbjct: 545 EQAARTIADAGHLSPFPQAAQPVYWDHVQALYMDPLPDLLVLADNAPPFALTHASSLIVN 604
Query: 656 PVFHNT 661
P +T
Sbjct: 605 PGSFST 610
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 56/215 (26%), Positives = 99/215 (46%), Gaps = 33/215 (15%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKF-KLVDKKRKLCADSDAKSKLFRER-YNIIRQRTLRH 294
E+ F V+SA +P+ Y+ K +L D++ L + +K +++ YN LR
Sbjct: 127 EESFKVVSALAMPRLRYNTKRHKVERLSDERGSLLGSAQSKIDMYKTWWYNA----HLRE 182
Query: 295 SLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ 354
N + + +E L + + ++G++S+ + +++EDPTG + +DLS
Sbjct: 183 G-----NGLVGAGAITTIESLAG--RYSGRWRLMGILSEAEYGLHYIEDPTGRLLVDLSH 235
Query: 355 T-SYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSL 413
+ P L+TE +VLVEG KD+ L V+ + P G GGP S
Sbjct: 236 AKAKRPRLFTEGGLVLVEGKMKDEKLMVELIDVP------------GAAEKEGGPYIPSP 283
Query: 414 KSVNRMT-------KMEKNNENAMIVILSDVHLDN 441
+ + M+ M + M+V+ SD+ +DN
Sbjct: 284 QVCDSMSYEETIIRAMGDGGDKGMVVVFSDIRVDN 318
>gi|159489516|ref|XP_001702743.1| predicted protein [Chlamydomonas reinhardtii]
gi|158280765|gb|EDP06522.1| predicted protein [Chlamydomonas reinhardtii]
Length = 138
Score = 72.0 bits (175), Expect = 9e-10, Method: Composition-based stats.
Identities = 39/111 (35%), Positives = 59/111 (53%), Gaps = 8/111 (7%)
Query: 537 PALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM--------CRNCIKF 588
P LP+ +T++ + +P + A+NPCR++Y +Q I++ R +L ++
Sbjct: 28 PPLPRSLTTDLRRVLPTAHFASNPCRLRYATQRIVLFRHDLQRRLLRRTLLPLAEPASAG 87
Query: 589 PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
P + H TL+ QG L LPL PVYW AL LYPLPD V++ D
Sbjct: 88 PSPSALWGHTALTLLQQGHLAPLPLLAQPVYWQHDSALGLYPLPDAVVVAD 138
>gi|330933680|ref|XP_003304251.1| hypothetical protein PTT_16781 [Pyrenophora teres f. teres 0-1]
gi|311319228|gb|EFQ87650.1| hypothetical protein PTT_16781 [Pyrenophora teres f. teres 0-1]
Length = 775
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 117/549 (21%), Positives = 203/549 (36%), Gaps = 148/549 (26%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
VI AF+ P+ Y+ K F+ + L + K++LFR+RY+I+ QR LR+ F
Sbjct: 207 VIGAFEQPKLIYNFTQKHFEKSATRPSLFPNPSHKTELFRQRYHIVHQRILRNETFQAPT 266
Query: 298 ------NNINPNADSVKLDWVEYLMSLTNVNHKT----VVLGMISQLKENRYFLEDPTGI 347
+ +N S+ + + + N+ +T ++LGM++ L D TG
Sbjct: 267 FSTARSSTLN-RTGSIATSQMNSITPIANLLGRTGSTHLLLGMLTISATGALSLSDLTGT 325
Query: 348 VQLDLSQTSYHP--GLY-TENCIVLVEGHYKDQILHVD-------------------ALG 385
+ LD+ P G Y IVLVEG Y++ ++G
Sbjct: 326 ITLDIQHARPIPENGAYFAPGMIVLVEGSYEEDGGTTSTLGGSGGIGGTIGGKFLAFSVG 385
Query: 386 FPP-----------PEASKNSRL--YFGNQNIWG-GPSPVSLKSVNRMTKMEKNNENAM- 430
PP E KNS FG + G G + +N++ + ++A
Sbjct: 386 HPPCERRTATLGGTEEVDKNSLAGPAFGWTDFLGVGSQRATGTRMNKIAAKLLDEDHAHN 445
Query: 431 IVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILV----VREEL 486
+VI SD+HLD + L + + + P+ T T+P Y IL+ + L
Sbjct: 446 VVIASDLHLDVPSTLSALRTLLRT----YTPDPT-DTHPV---YPLAIILMGNFSSKASL 497
Query: 487 LSKMCRNCIKFPEEGDISKHVSKN-------------NGEKDIIFLIVPKIYVEGTVTSK 533
+ I++ E D V + G+ D P + G T
Sbjct: 498 AGVPGTSSIEYKEHFDALASVLADFQPLIAHTTLILVPGDNDAW----PSAFSAGAATPL 553
Query: 534 VLSPALPKFITSEFQGFVPNSTM-----------------ATNPCRVQY--CSQEILVVR 574
P +P TS + V + +NP R+ + E+ ++R
Sbjct: 554 PRKP-IPTMFTSRIRKVVAEANREIWGAGKAKGKEGEVIWTSNPSRLSWFGVKGEMAIIR 612
Query: 575 EELLSKMCRNCIKF----PEEGD------------------------------------- 593
+++ ++ RN I+F P+ D
Sbjct: 613 DDVAGRLQRNAIRFNKPPPDVDDEMPYAPSTQAQDAAQQDAMDLDLPRPPPKPQPQQDTI 672
Query: 594 -----ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQ 647
++ RT++SQ L P + P++W L+LYPLP ++L D + ++ ++
Sbjct: 673 DPDTQTARALTRTILSQSHLSPYPFSSRPLHWDYGHVLNLYPLPTCLVLADSEAPSFVVK 732
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 733 YFGCTVLNP 741
Score = 43.9 bits (102), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 13/116 (11%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI AF+ P+ Y+ K F+ + L + K++LFR+RY+I+ QR LR+ F
Sbjct: 207 VIGAFEQPKLIYNFTQKHFEKSATRPSLFPNPSHKTELFRQRYHIVHQRILRNETFQ--A 264
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCL 151
P + + + S+ SQ+ + LLG+ S HL L L
Sbjct: 265 PTFSTARSSTLNRTGSIAT-----------SQMNSITPIANLLGRTGSTHLLLGML 309
>gi|238501986|ref|XP_002382227.1| DNA polymerase epsilon subunit B, putative [Aspergillus flavus
NRRL3357]
gi|220692464|gb|EED48811.1| DNA polymerase epsilon subunit B, putative [Aspergillus flavus
NRRL3357]
Length = 752
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 298
V+ AFDIP+ Y+ D K F++ K L K+ LFR+RYN+I QR LR+ F
Sbjct: 187 VVDAFDIPRLTYNADKKYFEVAKSKASLFPQPSHKTALFRDRYNVIHQRLLRNESFQLSL 246
Query: 299 -------------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPT 345
+ PN KL V L+ + +H ++LGM+S L D T
Sbjct: 247 GSSSVPSLSRSSSSFAPN-KCYKLTPVANLLGRSGTSH--LILGMLSVSPTGDLSLTDLT 303
Query: 346 GIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
G + L+LS P + IVLV+G Y+++
Sbjct: 304 GSIALELSHARMIPENGAWFAPGMIVLVDGIYEEE 338
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 92
V+ AFDIP+ Y+ D K F++ K L K+ LFR+RYN+I QR LR+ F
Sbjct: 187 VVDAFDIPRLTYNADKKYFEVAKSKASLFPQPSHKTALFRDRYNVIHQRLLRNESFQLSL 246
Query: 93 -------------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMIS 126
+ PN KL V L+ + +H ++LGM+S
Sbjct: 247 GSSSVPSLSRSSSSFAPN-KCYKLTPVANLLGRSGTSH--LILGMLS 290
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YTI 646
P ++S+ V+T++ QGT+ PL+L PV W +L LYPLP IL D A + +
Sbjct: 652 MPSAVNMSRKLVKTILDQGTMSPFPLSLRPVLWDYASSLQLYPLPSSFILADPEAAPFCM 711
Query: 647 QNTDCIFINP 656
C +NP
Sbjct: 712 TYEGCHVMNP 721
>gi|317142977|ref|XP_001819227.2| DNA polymerase epsilon subunit B [Aspergillus oryzae RIB40]
gi|391863737|gb|EIT73037.1| DNA polymerase epsilon, subunit B [Aspergillus oryzae 3.042]
Length = 752
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 298
V+ AFDIP+ Y+ D K F++ K L K+ LFR+RYN+I QR LR+ F
Sbjct: 187 VVDAFDIPRLTYNADKKYFEVAKSKASLFPQPSHKTALFRDRYNVIHQRLLRNESFQLSL 246
Query: 299 -------------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPT 345
+ PN KL V L+ + +H ++LGM+S L D T
Sbjct: 247 GSSSVPSLSRSSSSFAPN-KCYKLTPVANLLGRSGTSH--LILGMLSVSPTGDLSLTDLT 303
Query: 346 GIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
G + L+LS P + IVLV+G Y+++
Sbjct: 304 GSIALELSHARMIPENGAWFAPGMIVLVDGIYEEE 338
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 92
V+ AFDIP+ Y+ D K F++ K L K+ LFR+RYN+I QR LR+ F
Sbjct: 187 VVDAFDIPRLTYNADKKYFEVAKSKASLFPQPSHKTALFRDRYNVIHQRLLRNESFQLSL 246
Query: 93 -------------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMIS 126
+ PN KL V L+ + +H ++LGM+S
Sbjct: 247 GSSSVPSLSRSSSSFAPN-KCYKLTPVANLLGRSGTSH--LILGMLS 290
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YTI 646
P ++S+ V+T++ QGT+ PL+L PV W +L LYPLP IL D A + +
Sbjct: 652 MPSAVNMSRKLVKTILDQGTMSPFPLSLRPVLWDYASSLQLYPLPSSFILADPEAAPFCM 711
Query: 647 QNTDCIFINP 656
C +NP
Sbjct: 712 TYEGCHVMNP 721
>gi|190344359|gb|EDK36022.2| hypothetical protein PGUG_00120 [Meyerozyma guilliermondii ATCC
6260]
Length = 639
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 119/508 (23%), Positives = 194/508 (38%), Gaps = 107/508 (21%)
Query: 235 SEEQI-----FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQ 289
SEE+I F VI+ P + +D K+F L +K L F RY+++
Sbjct: 113 SEEEINWKDFFKVINPPQQPNYRFDRQRKQFSL-EKPSTLSDAVTTNISYFNSRYHLLAD 171
Query: 290 RTLRH--------SLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFL 341
R R+ + F+ + S ++ ++ ++ + K ++ G++S+ Y L
Sbjct: 172 RLSRNENFQKSSLASFSAATHSVQSTEITLIKNVLGRDGL--KFILFGLLSKNANGDYIL 229
Query: 342 EDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYK------------DQILHVDALGFPP 388
ED T ++L+LSQ G Y V+VEG Y HV +G PP
Sbjct: 230 EDATDHIELNLSQAHKTEGSYYCSGMFVVVEGIYSASGGTLSSANLIGGCFHVSHIGQPP 289
Query: 389 PEASKNSRLYFGNQNIWGGPSPVSLK----SVNRMTKMEKNNENAMIVIL-SDVHLDNDK 443
E S FGN + G S S K R+ +EK+ + IV L ++ LD+ +
Sbjct: 290 AERRDLSLENFGNLDFVGINSDTSTKLNKTLKKRLASIEKSLVDHKIVFLGANCFLDDAR 349
Query: 444 VRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDI 503
V L S F+ + + A P + V+ +S
Sbjct: 350 VLEGLKRLF-STFERDIVDGEKA--PLAI--------VMYGSFISGPMTATSTSISTISN 398
Query: 504 SKHVSKNNGE------------KDIIFLIVP-------KIYVEGTVTSKVL-SPALPKFI 543
S+ N E +D F+++P Y G+ L +P
Sbjct: 399 SESYKNNFDEFTSILSKFKYLIQDTKFVMIPGPNDPWQATYSLGSSNLNALPQQPIPSIF 458
Query: 544 TSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE---------- 591
S + +P N +A NP R+ Y SQEI+++R+++ K+ RN I F +
Sbjct: 459 ASRLERLLPKGNLILAFNPSRLCYLSQEIVMLRDDITPKLKRNDIVFNHDLELEKQRLDR 518
Query: 592 --------GDIS------------------KHFVRTLVSQGTLVSLPLNLCPVYWSQYGA 625
G IS + V+TL+ QGTL +L + + A
Sbjct: 519 DIEREANGGTISLDTIDTSEQHVSTKVKQARKLVKTLLDQGTLQPFLRDLRLIDTTYDYA 578
Query: 626 LSLYPLPDLVILGDQLNAYTIQNTDCIF 653
L + PLP ++L D T +N D +
Sbjct: 579 LRIEPLPSAIVLNDS----TFENFDVTY 602
>gi|367036471|ref|XP_003648616.1| hypothetical protein THITE_2106279 [Thielavia terrestris NRRL 8126]
gi|346995877|gb|AEO62280.1| hypothetical protein THITE_2106279 [Thielavia terrestris NRRL 8126]
Length = 817
Score = 71.6 bits (174), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 52/175 (29%), Positives = 80/175 (45%), Gaps = 18/175 (10%)
Query: 219 MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 278
M+ + E + + VISAFD P++ Y+ K F+ + K L + K++
Sbjct: 215 MSAMDFDEEPDDEGVRDVRRWLKVISAFDQPRYTYNVAKKHFERITSKPSLLPSASHKTE 274
Query: 279 LFRERYNIIRQRTLRHSLFNN----------INPNADSV---KLDWVEYLMSLTNVNHKT 325
FR RYN+I QR LR+ F + A S+ K+ V L+ NH
Sbjct: 275 AFRNRYNVIHQRLLRNEAFQTSAVTSARSSALRRGASSMQSHKITPVANLLGRHGTNH-- 332
Query: 326 VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
++LGM+ L + D TG + LDLS P +T IVLV+G Y+++
Sbjct: 333 MLLGMLVILPTGNLAISDLTGTIALDLSHAVAIPEDSAWFTPGMIVLVDGIYEEE 387
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 67/152 (44%), Gaps = 18/152 (11%)
Query: 3 LHRDNPSCTYDLIEFTTNECCRTE-INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR 61
L RD+ ++ + +E E + + VISAFD P++ Y+ K F+ + K
Sbjct: 204 LTRDDSQASFGMSAMDFDEEPDDEGVRDVRRWLKVISAFDQPRYTYNVAKKHFERITSKP 263
Query: 62 KLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVV 121
L + K++ FR RYN+I QR LR+ F ++T+ +
Sbjct: 264 SLLPSASHKTEAFRNRYNVIHQRLLRNEAFQT----------------SAVTSARSSALR 307
Query: 122 LGMISQLKENIT-TSGLLGKHQSPHLNLLCLI 152
G S IT + LLG+H + H+ L L+
Sbjct: 308 RGASSMQSHKITPVANLLGRHGTNHMLLGMLV 339
>gi|83767085|dbj|BAE57225.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 751
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 50/155 (32%), Positives = 73/155 (47%), Gaps = 22/155 (14%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 298
V+ AFDIP+ Y+ D K F++ K L K+ LFR+RYN+I QR LR+ F
Sbjct: 186 VVDAFDIPRLTYNADKKYFEVAKSKASLFPQPSHKTALFRDRYNVIHQRLLRNESFQLSL 245
Query: 299 -------------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPT 345
+ PN KL V L+ + +H ++LGM+S L D T
Sbjct: 246 GSSSVPSLSRSSSSFAPN-KCYKLTPVANLLGRSGTSH--LILGMLSVSPTGDLSLTDLT 302
Query: 346 GIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
G + L+LS P + IVLV+G Y+++
Sbjct: 303 GSIALELSHARMIPENGAWFAPGMIVLVDGIYEEE 337
Score = 55.5 bits (132), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 36/107 (33%), Positives = 52/107 (48%), Gaps = 19/107 (17%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 92
V+ AFDIP+ Y+ D K F++ K L K+ LFR+RYN+I QR LR+ F
Sbjct: 186 VVDAFDIPRLTYNADKKYFEVAKSKASLFPQPSHKTALFRDRYNVIHQRLLRNESFQLSL 245
Query: 93 -------------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMIS 126
+ PN KL V L+ + +H ++LGM+S
Sbjct: 246 GSSSVPSLSRSSSSFAPN-KCYKLTPVANLLGRSGTSH--LILGMLS 289
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YTI 646
P ++S+ V+T++ QGT+ PL+L PV W +L LYPLP IL D A + +
Sbjct: 651 MPSAVNMSRKLVKTILDQGTMSPFPLSLRPVLWDYASSLQLYPLPSSFILADPEAAPFCM 710
Query: 647 QNTDCIFINP 656
C +NP
Sbjct: 711 TYEGCHVMNP 720
>gi|342183733|emb|CCC93213.1| putative DNA polymerase epsilon subunit b [Trypanosoma congolense
IL3000]
Length = 532
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/408 (23%), Positives = 161/408 (39%), Gaps = 58/408 (14%)
Query: 282 ERYNIIRQR----------TLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMI 331
+RY R+R T RHSL + P ++ L+ + + VLGMI
Sbjct: 124 QRYLFARRRCLRSGLFCRDTARHSLLEGVCPLIPTIALEGI-------DPTETVAVLGMI 176
Query: 332 SQLKENRYFLEDPTGIVQLDLSQTSYHP-GLYTENCIVLVEGHYKDQILHVDALGFPPPE 390
+ + LED G V + + P GL + +V+ +G + ++ PP E
Sbjct: 177 VK-HDKGIHLEDLHGRVSIIFHEAMRPPMGLVGDGFLVVAKGQWTSGAFVALSIDLPPAE 235
Query: 391 ASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCE 450
++ G+ G P VN + EKN+ ++I+++S +HLD +L
Sbjct: 236 RREDMLKDIGSDCDLFGRRP---NDVNAALRREKNSLGSVIIVMSQIHLDQRSTVESLIV 292
Query: 451 FITSEFQGFVPNSTMATNPCRV-QYCSQEILVVREELLSKMCRNCIKFPE--EGDISKHV 507
F+ E Q M T V ++CS I + + PE EG ++
Sbjct: 293 FL-REMQNRSEAELMDTTLVMVGEFCSSSI----------HYDDVLHLPEPFEG-CDRYK 340
Query: 508 SKNNGEKDIIFLIVPKIY-------VEGTVTSKVLSPALPK-FITSEF----QGFVPNST 555
S N +I + P + V G L LP+ I S F Q +
Sbjct: 341 SLLNTLATMIAVHAPSVAQYTQVAIVPGQNDVTSLLGLLPQPPIVSAFGKSLQSRLKRVV 400
Query: 556 MATNPCRVQYCSQEILVVREELLSKM--CRNCIKFPEEGDI--SKHF---VRTLVSQGTL 608
A+NPCR+++ + EI+V R + + + +P+E +K F +T+V + L
Sbjct: 401 FASNPCRLRFFTHEIIVARRDFFRSLREKKRSFTWPQEDAAVSAKPFESIAKTIVDEAHL 460
Query: 609 VSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
P + + W AL L LP L++L D + +NP
Sbjct: 461 A--PDVMERILWKADEALCLTVLPHLLVLCDSTEQWECSYKGVHVVNP 506
>gi|407405955|gb|EKF30683.1| DNA polymerase epsilon subunit b, putative [Trypanosoma cruzi
marinkellei]
Length = 534
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 88/363 (24%), Positives = 145/363 (39%), Gaps = 36/363 (9%)
Query: 243 ISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN-NIN 301
IS +IP D + K+ KR DSD + + R+RY R+R LR LF ++N
Sbjct: 92 ISLEEIPYVYMDEKTGEIKVQRAKR----DSD-RFTVLRQRYLFTRRRCLRSGLFRMDLN 146
Query: 302 PNADSVKLDWVEYLMSLTNVN--HKTVVLGMISQLKENRYFLEDPTGIVQLDL-SQTSYH 358
+ + L + ++L ++ VLGMI + + N FLED G V+L
Sbjct: 147 KQSLNQGLPPLLSTIALEGIDPSENVAVLGMIRR-RLNEIFLEDLHGRVRLTFCGDVPPL 205
Query: 359 PGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNR 418
G + VLV G + +L V ++ PP E +++ G+ G P + + +
Sbjct: 206 IGFVGDGFFVLVRGQWSSGVLTVVSIELPPAERREDTLRDIGSDYDLFGYRPTDVAAAH- 264
Query: 419 MTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQE 478
EKN+ +I+++S VHLD N L F E Q + M T V S
Sbjct: 265 --LREKNSLQTVIIVMSHVHLDQTSTVNKLAYFF-KEMQNRTESELMNTTLVMVGDFSSS 321
Query: 479 ILVVREELLSKMCRNCIKFPEEGD-------------ISKHVSKNNGEKDIIFLIVPKIY 525
+ E +S + P EG I+ H ++ +VP
Sbjct: 322 --TIHYEDISHLPD-----PFEGSDRYKLLMDTLAMVIATHAPSVAQHTQVV--LVPGSN 372
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNC 585
+ + P + T Q + A NPCR+++ + E++V R + + +
Sbjct: 373 DFTGLLGVIPQPPIVSVFTKTLQARLKKVFFAPNPCRLRFFTHEMVVTRRDFFRSLQESG 432
Query: 586 IKF 588
F
Sbjct: 433 RAF 435
>gi|296828120|ref|XP_002851278.1| DNA polymerase epsilon subunit B [Arthroderma otae CBS 113480]
gi|238838832|gb|EEQ28494.1| DNA polymerase epsilon subunit B [Arthroderma otae CBS 113480]
Length = 743
Score = 71.2 bits (173), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 111/536 (20%), Positives = 201/536 (37%), Gaps = 116/536 (21%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
T N + ++SAF+ + Y+ + ++F+ L + + LFR+RY + QR
Sbjct: 183 TPNNRARKRVKIVSAFEQQRLTYNMNKRQFEPPHGHPSLFPPASNRVSLFRDRYYRVHQR 242
Query: 291 TLRHSLF------------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENR 338
LR+ F N P+ K+ + L + NH ++LG+ S
Sbjct: 243 LLRNETFQTSTLPTSFSEANTATPSNLPYKITSITSLQGRGSTNH--LLLGLFSVSPGGG 300
Query: 339 YFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQILHVDALGF--------- 386
Y L DP+G V +D++ P + I+LV+G Y+D+ A G
Sbjct: 301 YNLSDPSGTVAIDMTHAKGIPANGAWFVPGMILLVDGIYEDEDEDTVARGAGAIGGKFIA 360
Query: 387 ----PPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNN---------------E 427
PP + L NQ+ P + + + M+ ++N E
Sbjct: 361 ISVGGPPCERREVSLGIDNQSRGWNTMPPTDSAADPMSAGTESNQPECMNINSISRQPQE 420
Query: 428 NAMIVILSDVHLDNDKVRNNLCEFI-----TSEFQ---------GFVPNSTMATNPC-RV 472
+VI+ +V+LDN K L + S+ Q FV ++ + C +
Sbjct: 421 KQRMVIMGEVNLDNPKTLQALSMVLGQYDAASDNQLPSLFVLIGNFVHDAAIGAGNCGSI 480
Query: 473 QYCSQEILVVREELLSK---MCRNC--IKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVE 527
+Y +E +L + + RN + P E D I ++P+++
Sbjct: 481 EY--KEFFDSLASVLMQFPNLLRNSTFVFVPGENDPWASSFSPGATACIPRPLIPELFR- 537
Query: 528 GTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRV---QYCSQEILVVREELLSKMCRN 584
+ +V A + + + ++ ++NP R+ + + EI++ R+++ ++ RN
Sbjct: 538 -SRVRRVFQSAYSQDHSISSRQIDESAIWSSNPTRISVDEPNASEIVIFRDDISGRLRRN 596
Query: 585 C--------------------------IKFPEEG-------------DISKHFVRTLV-- 603
+ PEE D S R LV
Sbjct: 597 ALVMKDDKGKKLSPLQADTRTLSQDTTVADPEENVPTEINKDQQDVVDPSLVAARKLVKS 656
Query: 604 --SQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
QG L P + P+ W AL LYPLP +++ D + + +T+ C +NP
Sbjct: 657 ILDQGYLSPFPPTVRPILWDYASALHLYPLPTALVMADPEADPFTVTYEGCHAMNP 712
>gi|336473210|gb|EGO61370.1| hypothetical protein NEUTE1DRAFT_120353 [Neurospora tetrasperma
FGSC 2508]
gi|350293521|gb|EGZ74606.1| hypothetical protein NEUTE2DRAFT_103495 [Neurospora tetrasperma
FGSC 2509]
Length = 850
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/199 (29%), Positives = 86/199 (43%), Gaps = 21/199 (10%)
Query: 194 ETYHNLVPLILHPVIPVSNREQNNI---MNWLKLSSECCRTEINSEEQIFSVISAFDIPQ 250
E H L L PV P RE +N M+ L+ + E + + VI AFD P+
Sbjct: 189 EEQHAHSRLGLRPV-PSLTREDSNTSFGMSGLEFTEEPEDDSVRDVRRWLKVIHAFDQPR 247
Query: 251 FDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSV--- 307
Y+ K F+ K L + K+ FR RYN+I QR LR+ F + + S+
Sbjct: 248 LMYNVGKKHFERDPSKPSLLPAASHKTDAFRNRYNVIHQRILRNEAFQSSSVQGSSLRQR 307
Query: 308 ---------KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYH 358
K+ + L+ NH ++LGM+ L + D TG + LDLS
Sbjct: 308 TNASGLSSHKITPIANLLGRHGSNH--MLLGMLVVLPTGSLAISDLTGTITLDLSHAVAI 365
Query: 359 P---GLYTENCIVLVEGHY 374
P +T IVL++G Y
Sbjct: 366 PEDSAWFTPGMIVLIDGVY 384
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 3 LHRDNPSCTYDL--IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKK 60
L R++ + ++ + +EFT E + + VI AFD P+ Y+ K F+ K
Sbjct: 205 LTREDSNTSFGMSGLEFT-EEPEDDSVRDVRRWLKVIHAFDQPRLMYNVGKKHFERDPSK 263
Query: 61 RKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTV 120
L + K+ FR RYN+I QR LR+ F + + S++ +T
Sbjct: 264 PSLLPAASHKTDAFRNRYNVIHQRILRNEAFQSSSVQGSSLR--------------QRTN 309
Query: 121 VLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
G+ S I + LLG+H S H+ L L+
Sbjct: 310 ASGLSSHKITPI--ANLLGRHGSNHMLLGMLV 339
Score = 39.3 bits (90), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIF 653
++ V+T++ QG L + PV+W A+ LYPLP ++L D + + C
Sbjct: 751 ARKLVKTILDQGYLAPFRQAIRPVHWDYTSAMYLYPLPTAMVLVDTTAPPFCVTYEGCHV 810
Query: 654 INP 656
INP
Sbjct: 811 INP 813
>gi|358367571|dbj|GAA84189.1| DNA polymerase epsilon subunit B [Aspergillus kawachii IFO 4308]
Length = 746
Score = 70.9 bits (172), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 48/152 (31%), Positives = 74/152 (48%), Gaps = 18/152 (11%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VI AFDIP+ Y+ D K F++ + L S ++ LFR+RYN+I QR LRH F + +
Sbjct: 188 VIEAFDIPRLTYNADKKYFEVARSRPTLFPPSSHRTNLFRDRYNVIHQRLLRHESFQSPS 247
Query: 302 --------PNAD-----SVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIV 348
P++ KL + L+ +H ++LG++S L D TG +
Sbjct: 248 GPSRILRQPSSSLAVTQGYKLTPIANLLGRNGTSH--LILGLLSTSPTGDLTLSDLTGSI 305
Query: 349 QLDLSQTSYHP--GLY-TENCIVLVEGHYKDQ 377
LDL P G + VLV+G Y+++
Sbjct: 306 SLDLRHARMVPEDGAWLAPGMFVLVDGIYEEE 337
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
VI AFDIP+ Y+ D K F++ + L S ++ LFR+RYN+I QR LRH F +
Sbjct: 188 VIEAFDIPRLTYNADKKYFEVARSRPTLFPPSSHRTNLFRDRYNVIHQRLLRHESFQS 245
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YTIQNTDCIF 653
++ V++++ QGTL PL+L PV W +L LYPLP +IL D A + I C
Sbjct: 653 ARRLVKSILDQGTLSPFPLSLRPVLWDYVSSLQLYPLPTAIILADPEAAPFCITYEGCHV 712
Query: 654 INP 656
+NP
Sbjct: 713 MNP 715
>gi|241959468|ref|XP_002422453.1| DNA polymerase epsilon subunit B, putative [Candida dubliniensis
CD36]
gi|223645798|emb|CAX40461.1| DNA polymerase epsilon subunit B, putative [Candida dubliniensis
CD36]
Length = 707
Score = 70.5 bits (171), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 102/427 (23%), Positives = 168/427 (39%), Gaps = 105/427 (24%)
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHYK------ 375
K ++ G++S+ + Y LED T ++L+LSQ GL Y+ +LVEG Y
Sbjct: 261 QKFLIFGLLSKNANDEYTLEDETDNIELNLSQACKSQGLFYSTGMFLLVEGIYSASGGNS 320
Query: 376 -------DQILHVDALGFPPPEASKNSRLYFGNQNIWG---GPSPVS--------LKSVN 417
+V +G PP E + S +GN + G +PV+ K
Sbjct: 321 NQDHGYIGGCFYVSNIGHPPSERREISLDVYGNLDFLGMHRQIAPVTGEKITKIAKKFKK 380
Query: 418 RMTKMEKNNEN-AMIVILSDVHLDNDKVRNNLCEFIT------------SEFQ------- 457
++ ++EKN N +I + +D++LD+ KV + L +F E Q
Sbjct: 381 KLVQIEKNLSNHKLIFMGTDLYLDDFKVLDGLRKFFQKLENSIIESIEDEEGQLTEGTNI 440
Query: 458 --GFVPNSTMATNPCRVQYCSQEILVVREELLS---KMCRNCIKFPEEGDISKHVSKNNG 512
V + + P V S + E S KFP +I H
Sbjct: 441 PIALVLTGSFVSKPLSVTNSSVSNITNSESYKSNFDNFTSILSKFP---NIVSHCK---- 493
Query: 513 EKDIIFLIVPK------IYVEGTVTSKVLSPA-LPKFITSEFQGFVPNSTMAT--NPCRV 563
I LI K Y G+ + + +PK + + +P + NP R+
Sbjct: 494 ----IILIPGKNDPWQSTYSLGSSSLNYFPQSFIPKVFINRLEKLLPKGNLIVTWNPTRI 549
Query: 564 QYCSQEILVVREELLSKMCRNCIKFP-----EEGDISKH--------------------- 597
Y SQE++V ++EL++K+ RN I FP +E I+K+
Sbjct: 550 NYLSQELVVFKDELMTKLKRNDIIFPRDIQQQEELIAKNDQISNEERINNLIQNKNTHLP 609
Query: 598 --------FVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQN 648
V+T++ QG L NL + + +L + PLP+++IL D + + +
Sbjct: 610 SKIKQARKLVKTILDQGNLQPFLKNLKLINLAYDYSLRIEPLPNVIILNDSSFDNFEVTY 669
Query: 649 TDCIFIN 655
C IN
Sbjct: 670 NGCKVIN 676
>gi|28950027|emb|CAD70782.1| related to DNA directed DNA polymerase II chain B [Neurospora
crassa]
Length = 851
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 202 LILHPVIPVSNREQNNI---MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLK 258
L L PV P RE +N M+ L+ + E + + VI AFD P+ Y+ K
Sbjct: 198 LGLRPV-PSLTREDSNASFGMSGLEFTEEPEDDSVRDVRRWLKVIHAFDQPRLMYNVGKK 256
Query: 259 KFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSV----------- 307
F+ K L + K+ FR RYN+I QR LR+ F + + S+
Sbjct: 257 HFERDPSKPSLLPAASHKTDAFRNRYNVIHQRILRNEAFQSSSVQGSSLRQRTNANGLSS 316
Query: 308 -KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYT 363
K+ + L+ NH ++LGM+ L + D TG + LDLS P +T
Sbjct: 317 HKITPIANLLGRHGSNH--MLLGMLVVLPTGSLAISDLTGTITLDLSHAVAIPEDSAWFT 374
Query: 364 ENCIVLVEGHY 374
IVL++G Y
Sbjct: 375 PGMIVLIDGVY 385
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 69/152 (45%), Gaps = 19/152 (12%)
Query: 3 LHRDNPSCTYDL--IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKK 60
L R++ + ++ + +EFT E + + VI AFD P+ Y+ K F+ K
Sbjct: 206 LTREDSNASFGMSGLEFT-EEPEDDSVRDVRRWLKVIHAFDQPRLMYNVGKKHFERDPSK 264
Query: 61 RKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTV 120
L + K+ FR RYN+I QR LR+ F + + S++ TN N
Sbjct: 265 PSLLPAASHKTDAFRNRYNVIHQRILRNEAFQSSSVQGSSLR--------QRTNAN---- 312
Query: 121 VLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
G+ S I + LLG+H S H+ L L+
Sbjct: 313 --GLSSHKITPI--ANLLGRHGSNHMLLGMLV 340
>gi|164425361|ref|XP_958288.2| hypothetical protein NCU10155 [Neurospora crassa OR74A]
gi|157070897|gb|EAA29052.2| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 687
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 84/191 (43%), Gaps = 21/191 (10%)
Query: 202 LILHPVIPVSNREQNNI---MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLK 258
L L PV P RE +N M+ L+ + E + + VI AFD P+ Y+ K
Sbjct: 34 LGLRPV-PSLTREDSNASFGMSGLEFTEEPEDDSVRDVRRWLKVIHAFDQPRLMYNVGKK 92
Query: 259 KFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSV----------- 307
F+ K L + K+ FR RYN+I QR LR+ F + + S+
Sbjct: 93 HFERDPSKPSLLPAASHKTDAFRNRYNVIHQRILRNEAFQSSSVQGSSLRQRTNANGLSS 152
Query: 308 -KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYT 363
K+ + L+ NH ++LGM+ L + D TG + LDLS P +T
Sbjct: 153 HKITPIANLLGRHGSNH--MLLGMLVVLPTGSLAISDLTGTITLDLSHAVAIPEDSAWFT 210
Query: 364 ENCIVLVEGHY 374
IVL++G Y
Sbjct: 211 PGMIVLIDGVY 221
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/152 (28%), Positives = 68/152 (44%), Gaps = 19/152 (12%)
Query: 3 LHRDNPSCTYDL--IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKK 60
L R++ + ++ + +EFT E + + VI AFD P+ Y+ K F+ K
Sbjct: 42 LTREDSNASFGMSGLEFT-EEPEDDSVRDVRRWLKVIHAFDQPRLMYNVGKKHFERDPSK 100
Query: 61 RKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTV 120
L + K+ FR RYN+I QR LR+ F + + S++ TN N
Sbjct: 101 PSLLPAASHKTDAFRNRYNVIHQRILRNEAFQSSSVQGSSLR--------QRTNAN---- 148
Query: 121 VLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
G+ S I LLG+H S H+ L L+
Sbjct: 149 --GLSSHKITPIAN--LLGRHGSNHMLLGMLV 176
>gi|115398397|ref|XP_001214790.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114192981|gb|EAU34681.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 749
Score = 69.7 bits (169), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/150 (30%), Positives = 70/150 (46%), Gaps = 16/150 (10%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
V+ AFDIP+ Y+ D K F++ K L K+ LFR+RYN + QR LR+ F +
Sbjct: 185 VVEAFDIPRLTYNADKKYFEITKSKPTLFPPPSRKTTLFRDRYNTVYQRLLRNESFQTSS 244
Query: 302 PNAD-----------SVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQL 350
KL + L+ + +H ++LG++S L D TG + L
Sbjct: 245 SGRSLKRTSSFASNQCYKLTPIANLLGRSGTSH--LLLGLLSTSPTGELSLTDLTGSIAL 302
Query: 351 DLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
DLS P + IVLV+G Y+++
Sbjct: 303 DLSHARMIPEDGAWFAPGMIVLVDGIYEEE 332
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 91
V+ AFDIP+ Y+ D K F++ K L K+ LFR+RYN + QR LR+ F
Sbjct: 185 VVEAFDIPRLTYNADKKYFEITKSKPTLFPPPSRKTTLFRDRYNTVYQRLLRNESF 240
Score = 46.6 bits (109), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/64 (34%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Query: 594 ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCI 652
+++ V+T++ QGT+ PL+ PV W +L LYPLP IL D + + + C
Sbjct: 656 MARKLVKTILDQGTMSPFPLSTRPVLWDYAASLQLYPLPTSFILADAEAVPFCMTYEGCH 715
Query: 653 FINP 656
+NP
Sbjct: 716 VMNP 719
>gi|171691747|ref|XP_001910798.1| hypothetical protein [Podospora anserina S mat+]
gi|170945822|emb|CAP72622.1| unnamed protein product [Podospora anserina S mat+]
Length = 818
Score = 69.7 bits (169), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 127/601 (21%), Positives = 214/601 (35%), Gaps = 145/601 (24%)
Query: 194 ETYHNLVPLILHPVIPVSNREQNNI-MNWLKLSSECCRTEINSEEQI---FSVISAFDIP 249
E H+ L L P Q + M+ + L E + + + V+SAF+ P
Sbjct: 195 EADHSKTRLGLRPTSLAREDSQASFGMSGIGLGGEDDELDEDGSKDARRWLKVVSAFEQP 254
Query: 250 QFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSV-- 307
+F Y+ K F+ + L K+ FR RY+II QR LR+ F + S
Sbjct: 255 RFTYNVAKKHFERITTPPSLLPPPSHKTDSFRNRYHIIHQRLLRNESFQTSAVTSFSRSS 314
Query: 308 --------KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP 359
K+ + L+ H ++LGM+ L + D TG + LDLS + P
Sbjct: 315 SNASFRSHKITPIANLLGRHGTTH--LLLGMLIVLPTGALAISDLTGAITLDLSHAAAIP 372
Query: 360 ---GLYTENCIVLVEGHYKDQILHVDA--------------------LGFPPPEASKNSR 396
+T IVLV+G Y+++ V +G PP E + +
Sbjct: 373 HDSAWFTPGMIVLVDGIYEEEEESVGKGLSGSSGVGGTIGGRFQGFFIGQPPCEKRRATL 432
Query: 397 LYFG--------NQNIWGGPSPVSLKSVN-------RMTKMEK--------NNENAMIVI 433
G I GG + V +M K+E+ + + IVI
Sbjct: 433 GVSGLDGMAGDEEHTIGGGFGWIDFLGVGSERAIGSKMRKLEQRLLRQQPAGQQRSRIVI 492
Query: 434 LSDVHLDNDKVRNNLCEFIT---SEFQGFVPNSTMATN---PCRVQYCSQEIL------- 480
L +++LD + L + ++ ++ +G P S + T C V
Sbjct: 493 LGELNLDQPRSLQALKKVLSLYATDGEGETPMSFIITGNFTSCGVMASHGGGATTGTGGA 552
Query: 481 --VVREELLSKMCRNCIKFPE----------EGDISKHVSKNNGEKDIIFLIVPKIYVEG 528
+ +E + FP GD VS G + +P+ V G
Sbjct: 553 GSIEYKEYFDALASTLADFPTLLTTATFVFVPGDNDGWVSAFGGGAAV---PLPRRGVPG 609
Query: 529 TVTSKV----LSPALPKFITSEFQGFVPNSTMATNPCRVQY--CSQEILVVREELLSKMC 582
TS+V + +T E +G + +NP R+ +E++V R+++ +++
Sbjct: 610 LFTSRVRRTFAAANQEAGLTGEKKGG--EAVWTSNPSRLSLFGPGREVVVFRDDISARLR 667
Query: 583 RNCIKFP---EEGD-------------------------------------------ISK 596
R ++ EGD ++
Sbjct: 668 RANVRLKGKEAEGDGDVEMAGATQDNGDAMEVDGDEQQQEQRPSPVADPNAVPYDVLAAR 727
Query: 597 HFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFIN 655
V+T++ QG L ++ PV+W L LYPLP V+L D + + C +N
Sbjct: 728 KLVKTILDQGYLAPFRQSIRPVHWDYTSPLYLYPLPTAVVLVDTTAPPFCVTYEGCHVMN 787
Query: 656 P 656
P
Sbjct: 788 P 788
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 51/117 (43%), Gaps = 18/117 (15%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
V+SAF+ P+F Y+ K F+ + L K+ FR RY+II QR LR+ F
Sbjct: 247 VVSAFEQPRFTYNVAKKHFERITTPPSLLPPPSHKTDSFRNRYHIIHQRLLRNESFQT-- 304
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
S + + + +HK + + LLG+H + HL L LI
Sbjct: 305 ----SAVTSFSRSSSNASFRSHKITPI------------ANLLGRHGTTHLLLGMLI 345
>gi|238880358|gb|EEQ43996.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 708
Score = 69.3 bits (168), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 116/533 (21%), Positives = 209/533 (39%), Gaps = 114/533 (21%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLV-------DKKRK-----------LCADSDAKSK 278
+ F V+S + P +D K+F +V DKK K L + A +
Sbjct: 145 QDYFKVVSPNNQPTSIFDKTRKQFDIVFKNNDDKDKKAKRGGKLESIVAELVKNLPASIE 204
Query: 279 LFRERYNIIRQRTLRHSLFNNIN------------PNADSVKLDWVEYLMS-LTNVNHKT 325
F RY ++ R R+ F + DS+ + + + L K
Sbjct: 205 SFNNRYYLLSDRLSRNENFQKKSLISLSALNSFKEGKTDSITGHEISLIKNMLGRDGQKF 264
Query: 326 VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHYK--------- 375
++ G++S+ + Y LED T ++L+LSQ GL Y +LVEG Y
Sbjct: 265 LIFGLLSKNANDEYTLEDETDHIELNLSQAFKSQGLFYCPGMFLLVEGIYSASGGNSNQD 324
Query: 376 ----DQILHVDALGFPPPEASKNSRLYFGNQNIWG---GPSPVSLKSVNRMTK------- 421
+V +G PP E + S +GN + G +PV+ + + +++K
Sbjct: 325 HGYIGGCFYVSNIGHPPSERRETSLDVYGNLDFLGMHRQIAPVTGEKITKISKKFKKRLV 384
Query: 422 -MEKNNEN-AMIVILSDVHLDN-----------DKVRNNLCEFITSEFQGFVPNSTMATN 468
+EK N +I + +D++LD+ K+ N++ E I E + +
Sbjct: 385 LIEKTLYNHKLIFVGTDLYLDDFKVLDGLRKFFQKLENSIIESIEDEEGQMAEGTNIPLA 444
Query: 469 PCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSK--NNGEKDIIFLIVPK--- 523
+ L V ++ + + + + VSK N + I LI K
Sbjct: 445 LVFTGSFVSKPLSVTNSSVTNITNSESYKSNFDNFTTIVSKYPNIVSRCKIILIPGKNDP 504
Query: 524 ---IYVEGTVTSKVL-SPALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREEL 577
Y G+ + ++PK + + +P N ++ NP R+ Y SQE++V ++EL
Sbjct: 505 WQSTYSLGSSSLNYFPQSSIPKVFINRLEKLLPKGNLVVSWNPTRINYLSQELVVFKDEL 564
Query: 578 LSKMCRNCIKFP----EEGDI------------------------------SKHFVRTLV 603
++K+ RN I FP E+ ++ ++ V+T++
Sbjct: 565 MTKLKRNDIIFPRDIQEQEELIAQDDQRTNEERINNLIQNKNTHLPSKIKQARKLVKTIL 624
Query: 604 SQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFIN 655
QG L NL + + +L + PLP ++IL D + + + C +N
Sbjct: 625 DQGNLQPFLKNLKLINLAYDYSLRIEPLPSVIILNDSSFDNFEVTYNGCKVVN 677
>gi|350635276|gb|EHA23638.1| hypothetical protein ASPNIDRAFT_173303 [Aspergillus niger ATCC
1015]
Length = 748
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VI AFDIP+ Y+ D + F++ + L S ++ LFR+RYN+I QR LRH F +
Sbjct: 188 VIEAFDIPRLTYNADKRYFEVARSRPTLFPPSSHRTNLFRDRYNVIHQRLLRHESFQ--S 245
Query: 302 PNADS---------------VKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
P+ S KL + L+ +H ++LG++S L D TG
Sbjct: 246 PSGPSRILRKSSSSLAVTQGYKLTPIANLLGRNGTSH--LILGLLSMSPTGDLNLSDLTG 303
Query: 347 IVQLDLSQTSYHP--GLY-TENCIVLVEGHYKDQ 377
+ LDL P G + VLV+G Y+++
Sbjct: 304 SISLDLRHARMVPEDGAWLAPGMFVLVDGIYEEE 337
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI AFDIP+ Y+ D + F++ + L S ++ LFR+RYN+I QR LRH F +
Sbjct: 188 VIEAFDIPRLTYNADKRYFEVARSRPTLFPPSSHRTNLFRDRYNVIHQRLLRHESFQ--S 245
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNL 148
P+ S L +++T T + ++ + + GLL + LNL
Sbjct: 246 PSGPSRILRKSSSSLAVTQGYKLTPIANLLGRNGTSHLILGLLSMSPTGDLNL 298
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YTIQNTDCIF 653
++ V++++ QGTL PL+L PV W +L LYPLP +IL D A + I C
Sbjct: 655 ARRLVKSILDQGTLSPFPLSLRPVLWDYVSSLQLYPLPTAIILADPEAAPFCITYEGCHV 714
Query: 654 IN 655
+N
Sbjct: 715 MN 716
>gi|145234482|ref|XP_001400612.1| DNA polymerase epsilon subunit B [Aspergillus niger CBS 513.88]
gi|134057558|emb|CAK48912.1| unnamed protein product [Aspergillus niger]
Length = 748
Score = 68.9 bits (167), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 22/154 (14%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VI AFDIP+ Y+ D + F++ + L S ++ LFR+RYN+I QR LRH F +
Sbjct: 188 VIEAFDIPRLTYNADKRYFEVARSRPTLFPPSSHRTNLFRDRYNVIHQRLLRHESFQ--S 245
Query: 302 PNADS---------------VKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
P+ S KL + L+ +H ++LG++S L D TG
Sbjct: 246 PSGPSRILRKSSSSLAVTQGYKLTPIANLLGRNGTSH--LILGLLSMSPTGDLNLSDLTG 303
Query: 347 IVQLDLSQTSYHP--GLY-TENCIVLVEGHYKDQ 377
+ LDL P G + VLV+G Y+++
Sbjct: 304 SISLDLRHARMVPEDGAWLAPGMFVLVDGIYEEE 337
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 57/113 (50%), Gaps = 2/113 (1%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI AFDIP+ Y+ D + F++ + L S ++ LFR+RYN+I QR LRH F +
Sbjct: 188 VIEAFDIPRLTYNADKRYFEVARSRPTLFPPSSHRTNLFRDRYNVIHQRLLRHESFQ--S 245
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNL 148
P+ S L +++T T + ++ + + GLL + LNL
Sbjct: 246 PSGPSRILRKSSSSLAVTQGYKLTPIANLLGRNGTSHLILGLLSMSPTGDLNL 298
Score = 48.1 bits (113), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 35/62 (56%), Gaps = 1/62 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YTIQNTDCIF 653
++ V++++ QGTL PL+L PV W +L LYPLP +IL D A + I C
Sbjct: 655 ARRLVKSILDQGTLSPFPLSLRPVLWDYVSSLQLYPLPTAIILADPEAAPFCITYEGCHV 714
Query: 654 IN 655
+N
Sbjct: 715 MN 716
>gi|50557148|ref|XP_505982.1| YALI0F28215p [Yarrowia lipolytica]
gi|74632175|sp|Q6C030.1|DPB2_YARLI RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|49651852|emb|CAG78794.1| YALI0F28215p [Yarrowia lipolytica CLIB122]
Length = 652
Score = 68.9 bits (167), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 28/239 (11%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 296
++ F VISAFD P F Y+ ++F+ K L A++ + S +F RY+++ R LR
Sbjct: 138 KEFFKVISAFDQPLFHYNARQQRFEKRKTKPTLFANAQSASNMFLTRYHLVYNRLLR--- 194
Query: 297 FNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQT- 355
N D+ L + + SL + + GM+S+ E + L+D TG + L L+
Sbjct: 195 ------NDDTTDLK-ITSIRSLIGRQGEFSIFGMLSKNPEQKICLQDDTGRILLILAAGC 247
Query: 356 SYHPGL-YTENCIVLVEGHY----KDQILHVDALGFPPPEASKNSRLYFGNQN---IWGG 407
PG+ Y E V+ G Y ++ V +G P E + + +GN + + G
Sbjct: 248 KPDPGVYYPEGSFVICNGRYMKSGDAEVFVVITMGPPVAEKRQETITAYGNMDYLGLHGN 307
Query: 408 PSPVSLKSVNR-----MTKMEKN-NENAMIVILSDVHLDND---KVRNNLCEFITSEFQ 457
P ++ + R M EK + +IV D++LDN K + I EFQ
Sbjct: 308 PHGSVVRRIERQVEASMLAEEKRLVDQKVIVFGGDMYLDNPLTLKALQKVFSTIELEFQ 366
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 31 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 90
++ F VISAFD P F Y+ ++F+ K L A++ + S +F RY+++ R LR
Sbjct: 138 KEFFKVISAFDQPLFHYNARQQRFEKRKTKPTLFANAQSASNMFLTRYHLVYNRLLR--- 194
Query: 91 FNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQ 127
N D+ L + + SL + + GM+S+
Sbjct: 195 ------NDDTTDLK-ITSIRSLIGRQGEFSIFGMLSK 224
>gi|340923609|gb|EGS18512.1| DNA polymerase II participates in chromosomal DNA replication-like
protein [Chaetomium thermophilum var. thermophilum DSM
1495]
Length = 831
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/151 (33%), Positives = 72/151 (47%), Gaps = 16/151 (10%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
VI+AFD P++ Y+ K F+ + K L K++ FR RYN+I QR LR+ F
Sbjct: 234 LKVINAFDQPRYTYNVAKKHFEKITTKPSLFPPPSHKTEAFRNRYNVIHQRLLRNEAFQT 293
Query: 300 ----------INPNA-DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIV 348
N A S K+ + L+ NH ++LGM+S L + D TG +
Sbjct: 294 SAVTTSRLRRTNSAAMQSHKITPIANLLGCHGTNH--MLLGMLSVLPTGNLAISDLTGSI 351
Query: 349 QLDLSQTSYHP---GLYTENCIVLVEGHYKD 376
LDLS P +T IVLV+G Y++
Sbjct: 352 ALDLSHAVAIPEDSAWFTPGMIVLVDGVYEE 382
Score = 50.4 bits (119), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 56/118 (47%), Gaps = 14/118 (11%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
VI+AFD P++ Y+ K F+ + K L K++ FR RYN+I QR LR+ F
Sbjct: 234 LKVINAFDQPRYTYNVAKKHFEKITTKPSLFPPPSHKTEAFRNRYNVIHQRLLRNEAFQT 293
Query: 94 ----------INPNA-DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE-NITTSGLLG 139
N A S K+ + L+ NH ++LGM+S L N+ S L G
Sbjct: 294 SAVTTSRLRRTNSAAMQSHKITPIANLLGCHGTNH--MLLGMLSVLPTGNLAISDLTG 349
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIF 653
++ V+T++ QG L ++ PV+W AL LYPLP ++L D A+ + C
Sbjct: 737 ARKLVKTILDQGYLSPFRPSIRPVHWDYTSALHLYPLPTALVLVDTTAPAFCVTYEGCNV 796
Query: 654 INP 656
+NP
Sbjct: 797 MNP 799
>gi|71412173|ref|XP_808284.1| DNA polymerase epsilon subunit B [Trypanosoma cruzi strain CL
Brener]
gi|70872457|gb|EAN86433.1| DNA polymerase epsilon subunit B, putative [Trypanosoma cruzi]
Length = 534
Score = 68.6 bits (166), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 91/374 (24%), Positives = 149/374 (39%), Gaps = 27/374 (7%)
Query: 222 LKLSSECCRTEINSEEQIFSVISAF---DIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 278
L ++ + R SE + S + +IP D + K+ +R DSD +
Sbjct: 68 LAITQQSVRDRGISEREGVSTVFPIPLEEIPHVYMDEKTGEIKVQRAER----DSD-RFT 122
Query: 279 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLT----NVNHKTVVLGMISQL 334
+ R+RY R+R LR LF + N S+ D L ++ + + VLGMI +
Sbjct: 123 VLRQRYLFTRRRCLRSGLFRR-DLNKQSLNQDLPPLLSTIALEGIDPSENVAVLGMIRR- 180
Query: 335 KENRYFLEDPTGIVQLD-LSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASK 393
+ N LED G V+L L G + VLV G + +L V ++ PP E +
Sbjct: 181 RLNEICLEDLHGRVRLTFLGGVPPLIGFVGDGFFVLVRGQWSSGVLVVVSIELPPAERRE 240
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT 453
++ G+ G P + + + EKN+ A+I+++S VHLD N L F
Sbjct: 241 DTLRDIGSDYDLFGYRPTDMAAAH---LREKNSLQAVIIVMSHVHLDQTSTVNKLVYFF- 296
Query: 454 SEFQGFVPNSTMATNPCRV-QYCSQEILVVREELLSKMCRNCIKFPEEGD-----ISKHV 507
E Q + M T V + S I L ++ D I+ H
Sbjct: 297 KEMQNRTESELMNTTLVMVGDFSSSTIHYDDISHLPDPFEGSNRYKLLMDTLAMVITTHA 356
Query: 508 SKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS 567
++ + P V G + + P + T Q + A NPCR+++ +
Sbjct: 357 PSVAQHTQVVLVPGPN-DVTG-LLGVLPQPPIVSVFTRTLQARLKKIFFAPNPCRLRFFT 414
Query: 568 QEILVVREELLSKM 581
EI+V R + +
Sbjct: 415 HEIVVTRRDFFRSL 428
>gi|68473041|ref|XP_719326.1| potential DNA polymerase epsilon subunit [Candida albicans SC5314]
gi|46441139|gb|EAL00438.1| potential DNA polymerase epsilon subunit [Candida albicans SC5314]
Length = 708
Score = 68.2 bits (165), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 115/533 (21%), Positives = 209/533 (39%), Gaps = 114/533 (21%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLV-----DKKRK-------------LCADSDAKSK 278
+ F V+S + P +D K+F +V DK +K L + A +
Sbjct: 145 QDYFKVVSPNNQPTSIFDKTRKQFDIVFKNNDDKDKKAERGGKLESIVAELVKNLPASIE 204
Query: 279 LFRERYNIIRQRTLRHSLFNNIN------------PNADSVKLDWVEYLMS-LTNVNHKT 325
F RY ++ R R+ F + DS+ + + + L K
Sbjct: 205 SFNNRYYLLSDRLSRNENFQKKSLISLSALNSFKEGKTDSITGHEISLIKNMLGRDGQKF 264
Query: 326 VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHYK--------- 375
++ G++S+ + Y LED T ++L+LSQ GL Y +LVEG Y
Sbjct: 265 LIFGLLSKNANDEYTLEDETDHIELNLSQAFKSQGLFYCPGMFLLVEGIYSASGGNSNQD 324
Query: 376 ----DQILHVDALGFPPPEASKNSRLYFGNQNIWG---GPSPVSLKSVNRMTK------- 421
+V +G PP E + S +GN + G +PV+ + + +++K
Sbjct: 325 HGYIGGCFYVSNIGHPPSERRETSLDVYGNLDFLGMHRQIAPVTGEKITKISKKFKKRLV 384
Query: 422 -MEKNNEN-AMIVILSDVHLDN-----------DKVRNNLCEFITSEFQGFVPNSTMATN 468
+EK N +I + +D++LD+ K+ N++ E I E + +
Sbjct: 385 LIEKTLYNHKLIFVGTDLYLDDFKVLDGLRKFFQKLENSIIESIEDEEGQMAEGTNIPLA 444
Query: 469 PCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSK--NNGEKDIIFLIVPK--- 523
+ L V ++ + + + + VSK N + I LI K
Sbjct: 445 LVFTGSFVSKPLSVTNSSVTNITNSESYKSNFDNFTTIVSKYPNIVSRCKIILIPGKNDP 504
Query: 524 ---IYVEGTVTSKVL-SPALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREEL 577
Y G+ + ++PK + + +P N ++ NP R+ Y SQE++V ++EL
Sbjct: 505 WQSTYSLGSSSLNYFPQSSIPKVFINRLEKLLPKGNLVVSWNPTRINYLSQELVVFKDEL 564
Query: 578 LSKMCRNCIKFP----EEGDI------------------------------SKHFVRTLV 603
++K+ RN I FP E+ ++ ++ V+T++
Sbjct: 565 MTKLKRNDIIFPRDIQEQEELIAQDDQRTNEERINNLIQNKNTHLPSKIKQARKLVKTIL 624
Query: 604 SQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFIN 655
QG L NL + + +L + PLP ++IL D + + + C +N
Sbjct: 625 DQGNLQPFLKNLKLINLAYDYSLRIEPLPSVIILNDSSFDNFEVTYNGCKVVN 677
>gi|295673158|ref|XP_002797125.1| DNA polymerase epsilon subunit B [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226282497|gb|EEH38063.1| DNA polymerase epsilon subunit B [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 744
Score = 68.2 bits (165), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 124/564 (21%), Positives = 204/564 (36%), Gaps = 163/564 (28%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
V+SAF+ + Y+ + K F ++ L + ++ +FR+RYN+I QR LR+ F
Sbjct: 164 VVSAFEQNRPVYNVNKKNFDIITTPPSLFPSASQRANIFRDRYNLIYQRLLRNEAFQIPL 223
Query: 298 ---NNINPNAD-SVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLS 353
N+ + +A+ S K+ + L+ + +H ++LG++S + DPTG + LD+
Sbjct: 224 QQSNSSHSSANRSYKVTSIANLLGRSGTSH--LLLGLLSVSPAGELSISDPTGSITLDIR 281
Query: 354 QTSYHP---GLYTENCIVLVEGHYKDQILH--------------------VDALGFPPPE 390
P +T IVL +G Y+++ + V ++G PP E
Sbjct: 282 DARAVPEDGSWFTPGMIVLADGVYREEEVVSGSTLTGSGGVGGTIGGKFIVASVGGPPCE 341
Query: 391 ------ASKNSRLYFGNQNIWGGPSPVSLKSVN-------RMTKMEK-----------NN 426
+ + R G+ ++ GG V V RM ++EK
Sbjct: 342 RREVSSGAAHHRGADGDMSVEGGFGWVDFLGVGSERSRGPRMRQIEKICLHKGQPEEQEK 401
Query: 427 ENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFV--PNSTMATNPCRVQYCSQEILVVRE 484
IV++ +V+LD K E ++ FQ + P M + Q+ L
Sbjct: 402 VRKQIVVMGEVNLDVPKT----VEALSYVFQSYTSFPEHQMPLVFILIGNFFQDAL---- 453
Query: 485 ELLSKMCRNCIKFPEEGDISKHVSKNNGE--KDIIFLIVP-------KIYVEGTVTSKVL 535
+ I+ E DI V ++ F+ VP Y G T+
Sbjct: 454 -MSGGGSSGGIECKEYFDILASVLSKYPRLLQNSTFVFVPGDNDPWASAYSAGASTT--- 509
Query: 536 SP--ALPKFITSEFQGFVPNSTMA----------------TNPCRVQYCS--QEILVVRE 575
SP A+P TS + N+ A +NP R+ E++V R+
Sbjct: 510 SPRDAIPDLFTSRVKRAFTNANNAHQLPNSRHTPGQAIWTSNPTRLSLFGPVHELVVFRD 569
Query: 576 ELLSKMCRNCIKF---------------------------------PEEGDISK------ 596
++ ++ RN I F P EGD +K
Sbjct: 570 DVSERLRRNSIVFKPQKPQEVPQARKEPIGTDKDMDLEYIDHNEPPPPEGDETKQQEQQQ 629
Query: 597 -------------------HFVRTLV----SQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
H R LV Q L P ++ PV W L LYPLP
Sbjct: 630 DQINQEKPLPTSTTKQTNLHASRKLVKTILDQNYLSPFPQHIRPVLWDYASVLHLYPLPT 689
Query: 634 LVILGDQ-LNAYTIQNTDCIFINP 656
++L D + + C +NP
Sbjct: 690 AMVLADSDAEPFAVTYEGCHVMNP 713
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/99 (28%), Positives = 55/99 (55%), Gaps = 10/99 (10%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 91
V+SAF+ + Y+ + K F ++ L + ++ +FR+RYN+I QR LR+ F
Sbjct: 164 VVSAFEQNRPVYNVNKKNFDIITTPPSLFPSASQRANIFRDRYNLIYQRLLRNEAFQIPL 223
Query: 92 ---NNINPNAD-SVKLDWVEYLMSLTNVNHKTVVLGMIS 126
N+ + +A+ S K+ + L+ + +H ++LG++S
Sbjct: 224 QQSNSSHSSANRSYKVTSIANLLGRSGTSH--LLLGLLS 260
>gi|159129157|gb|EDP54271.1| DNA polymerase epsilon subunit B, putative [Aspergillus fumigatus
A1163]
Length = 762
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
++ AFD+P+ Y+ D K F+L K L + K+ +FR+RYNII QR LR+ F
Sbjct: 196 IVEAFDMPRLTYNVDKKYFELTKSKATLFPQASHKTSMFRDRYNIIHQRLLRNETFQSSL 255
Query: 298 -----NNINPNADSV------KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
+++ ++ S +L + L+ + +H ++LG++S L D TG
Sbjct: 256 SYLTGHSMKRSSSSFAPTQCYRLTPIANLLGRSGTSH--LLLGLLSISPAGDLSLVDLTG 313
Query: 347 IVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
V LDLS P + +VLV+G Y+++
Sbjct: 314 SVALDLSHARTIPDDGAWFAPGMVVLVDGVYEEE 347
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
++ AFD+P+ Y+ D K F+L K L + K+ +FR+RYNII QR LR+ F +
Sbjct: 196 IVEAFDMPRLTYNVDKKYFELTKSKATLFPQASHKTSMFRDRYNIIHQRLLRNETFQS 253
Score = 47.4 bits (111), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ V+T++ QGT+ P ++ PV W +L LYPLP IL D ++ + + C
Sbjct: 669 ARKLVKTILDQGTMSPFPQSMRPVLWDHASSLQLYPLPTAFILADPEVAPFCMTYEGCHV 728
Query: 654 INP 656
+NP
Sbjct: 729 MNP 731
>gi|70989797|ref|XP_749748.1| DNA polymerase epsilon subunit B [Aspergillus fumigatus Af293]
gi|66847379|gb|EAL87710.1| DNA polymerase epsilon subunit B, putative [Aspergillus fumigatus
Af293]
Length = 762
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 77/154 (50%), Gaps = 20/154 (12%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
++ AFD+P+ Y+ D K F+L K L + K+ +FR+RYNII QR LR+ F
Sbjct: 196 IVEAFDMPRLTYNVDKKYFELTKSKATLFPQASHKTSMFRDRYNIIHQRLLRNETFQSSL 255
Query: 298 -----NNINPNADSV------KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
+++ ++ S +L + L+ + +H ++LG++S L D TG
Sbjct: 256 SYLTGHSMKRSSSSFAPTQCYRLTPIANLLGRSGTSH--LLLGLLSISPAGDLSLVDLTG 313
Query: 347 IVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
V LDLS P + +VLV+G Y+++
Sbjct: 314 SVALDLSHARTIPDDGAWFAPGMVVLVDGVYEEE 347
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
++ AFD+P+ Y+ D K F+L K L + K+ +FR+RYNII QR LR+ F +
Sbjct: 196 IVEAFDMPRLTYNVDKKYFELTKSKATLFPQASHKTSMFRDRYNIIHQRLLRNETFQS 253
Score = 47.4 bits (111), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ V+T++ QGT+ P ++ PV W +L LYPLP IL D ++ + + C
Sbjct: 669 ARKLVKTILDQGTMSPFPQSMRPVLWDHASSLQLYPLPTAFILADPEVAPFCMTYEGCHV 728
Query: 654 INP 656
+NP
Sbjct: 729 MNP 731
>gi|425772770|gb|EKV11158.1| DNA polymerase epsilon subunit B, putative [Penicillium digitatum
Pd1]
gi|425773561|gb|EKV11908.1| DNA polymerase epsilon subunit B, putative [Penicillium digitatum
PHI26]
Length = 750
Score = 67.4 bits (163), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/165 (30%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
VI AFD+P+ Y+ D K F+++ + L K+ LFR+RYN++ QR LR+ F +
Sbjct: 181 LKVIDAFDLPRLTYNVDKKYFEVIRSRPSLFPSPSCKTALFRDRYNLVYQRLLRNESFQS 240
Query: 300 INPNAD---------------SVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDP 344
A S K+ + L+ T +H ++LG++ L D
Sbjct: 241 SLGVAGVPSLRRSSSNLAHRQSYKMTPIANLLGRTGTSH--LLLGLLGISPTGDLSLVDL 298
Query: 345 TGIVQLDLSQTSYHP---GLYTENCIVLVEGHY-KDQILHVDALG 385
TG V LDLS P + IVLV+G Y +++++ ALG
Sbjct: 299 TGSVALDLSHARMIPEDGAWFAPGMIVLVDGIYEEEEMVKGAALG 343
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 62/122 (50%), Gaps = 16/122 (13%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
VI AFD+P+ Y+ D K F+++ + L K+ LFR+RYN++ QR LR+ F +
Sbjct: 181 LKVIDAFDLPRLTYNVDKKYFEVIRSRPSLFPSPSCKTALFRDRYNLVYQRLLRNESFQS 240
Query: 94 INPNADSVKLDWVEYL-MSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
S+ + V L S +N+ H+ Q + + LLG+ + HL LL L+
Sbjct: 241 ------SLGVAGVPSLRRSSSNLAHR--------QSYKMTPIANLLGRTGTSHL-LLGLL 285
Query: 153 WV 154
+
Sbjct: 286 GI 287
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 594 ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCI 652
+++ V+T++ QGT+ PL L PV W AL LYPLP ++L D + ++ + C
Sbjct: 656 MARRLVKTILDQGTISPFPLPLRPVLWDHASALQLYPLPTALVLADPETASFCMTYEGCH 715
Query: 653 FINP 656
+NP
Sbjct: 716 VMNP 719
>gi|344233098|gb|EGV64971.1| hypothetical protein CANTEDRAFT_103862 [Candida tenuis ATCC 10573]
Length = 621
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 59/244 (24%), Positives = 109/244 (44%), Gaps = 30/244 (12%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 296
++ F VI+ + P + +D K+F L + KL D + F RY++IR R R+ +
Sbjct: 118 QEFFRVINPPEQPNYTFDKQRKQFGLRGEG-KLSNFRDTNIEYFNNRYSLIRDRLSRNEV 176
Query: 297 F--------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIV 348
F +NI S ++ ++ ++ N ++ G++++ Y +ED T +
Sbjct: 177 FQKTNYQSISNIKSKKQSKEITLIKNIIG--NNGQSFIIFGLLTKNFRGVYTIEDTTDSI 234
Query: 349 QLDLSQTSYH-PGLYTENCIVLVEGHYK-------DQILHVDALGFPPPEASKNSRLYFG 400
+L+L Q YTE + EG Y + I HV LG PP E S ++G
Sbjct: 235 ELNLDQAQKMLDAFYTEGMFLTAEGLYSQFNENSPNGIFHVTHLGHPPAERRDISSEHYG 294
Query: 401 NQNIWG----------GPSPVSLKSVNRMTKMEKN-NENAMIVILSDVHLDNDKVRNNLC 449
N + S VS ++ ++EK ++ I++ S+++LD+ K+ L
Sbjct: 295 NLDFLNINKENLSNLHHSSKVSKDFRKKLVRLEKQLTDHKFIILGSNIYLDDLKIMKGLR 354
Query: 450 EFIT 453
+ +
Sbjct: 355 KLFS 358
Score = 57.4 bits (137), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 66/144 (45%), Gaps = 28/144 (19%)
Query: 537 PALPKFITSEFQGFVPNS--TMATNPCRVQYCSQEILVVREELLSKMCRNCI-------- 586
P++P + + +P + NP RV Y SQEI++++++L+SK RN I
Sbjct: 452 PSIPSIFLNRLERLLPKGHLKLGWNPVRVNYLSQEIVILKDDLMSKFKRNDIILESDLNQ 511
Query: 587 -----------KFPEEGDISKHFVRTLVSQGTLVSLPLNL---CPVYWSQYGALSLYPLP 632
P + ++ VRTL+ QG L L L P+Y +L + PLP
Sbjct: 512 SNELLSENVDDNIPTKLKQARCLVRTLLDQGHLQPLSKGLKLVNPIYAH---SLRIEPLP 568
Query: 633 DLVILGD-QLNAYTIQNTDCIFIN 655
LVIL D + + + T C +N
Sbjct: 569 SLVILNDTKFENFEVPYTGCRVVN 592
>gi|342878989|gb|EGU80266.1| hypothetical protein FOXB_09193 [Fusarium oxysporum Fo5176]
Length = 790
Score = 67.0 bits (162), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 52/184 (28%), Positives = 83/184 (45%), Gaps = 21/184 (11%)
Query: 213 REQNNI---MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKL 269
RE +N M+ L + E +E + +I A+D P+F Y+ K F+ L
Sbjct: 178 REDSNTSFGMSGLGVDEEQEESETSDPRAWLKIIDAYDQPRFIYNVGKKHFEKDTSTPSL 237
Query: 270 CADSDAKSKLFRERYNIIRQRTLRHSLFNNIN-------------PNADSVKLDWVEYLM 316
+ K+ +FR RYN+I QR LR+ F + N S+KL + L+
Sbjct: 238 LPPASHKTTVFRNRYNVIHQRLLRNETFQSSAVSSSRKQSLSRSLSNQHSLKLTPIANLL 297
Query: 317 SLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGH 373
+H ++LG++ L + D TG + LDLSQ P + IVLV+G
Sbjct: 298 GRHGSSH--MLLGLLVVLPTGDLAISDLTGTIALDLSQAVAIPDDSAWFCPGMIVLVDGV 355
Query: 374 YKDQ 377
Y+++
Sbjct: 356 YEEE 359
Score = 46.6 bits (109), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 16/151 (10%)
Query: 3 LHRDNPSCTYDLIEFTTNECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR 61
+ R++ + ++ + +E +E + +I A+D P+F Y+ K F+
Sbjct: 176 IRREDSNTSFGMSGLGVDEEQEESETSDPRAWLKIIDAYDQPRFIYNVGKKHFEKDTSTP 235
Query: 62 KLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVV 121
L + K+ +FR RYN+I QR LR+ F + S + +S + N ++
Sbjct: 236 SLLPPASHKTTVFRNRYNVIHQRLLRNETFQS------SAVSSSRKQSLSRSLSNQHSLK 289
Query: 122 LGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
L I+ LLG+H S H+ L L+
Sbjct: 290 LTPIAN---------LLGRHGSSHMLLGLLV 311
Score = 39.3 bits (90), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 589 PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD-LVILGDQLNAYTIQ 647
P + ++ V+T++ QG L + PV+W AL LYPLP +V+L + +
Sbjct: 678 PHDVHAAQKLVKTILDQGYLAPFRQAIRPVHWDYSSALHLYPLPTAMVLLDTTAPPFCVT 737
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 738 YEGCHVMNP 746
>gi|320582358|gb|EFW96575.1| Second largest subunit of DNA polymerase II (DNA polymerase
epsilon) [Ogataea parapolymorpha DL-1]
Length = 644
Score = 66.6 bits (161), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 98/460 (21%), Positives = 190/460 (41%), Gaps = 90/460 (19%)
Query: 279 LFRERYNIIRQRTLRH-----SLFNNINP-NADSVKLDWVEYLMSLTNV----NHKTVVL 328
LF +R+++++ R LR+ + F+ +N ++ K + + S+ N+ + +
Sbjct: 190 LFIQRFHLLKDRLLRNENFQPTTFSAVNSFTSNGPKEVENQQVTSIKNLLGRHGQRFFLF 249
Query: 329 GMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLY-TENCIVLVEGHYKDQ-ILHVDALGF 386
G++++ + L+D T ++LDL QT + Y TE ++ EG Y + +V +
Sbjct: 250 GLLTRSALGLWQLQDDTDSIELDLGQTLFPQNCYFTEGNFIICEGIYSNSGKFYVSTMIH 309
Query: 387 PPPEASKNSRLYFGNQN---IWGGPSPVSLKSVNRMTKMEKN-NENAMIVILSDVHLDND 442
PP E + S G + ++ + +++ +EK+ ++ I + D++L +
Sbjct: 310 PPAEKRETSLEVLGKMDFNSVYSNSGRIDPVLRSKLLHLEKDLADHKFIFLGGDIYLSDA 369
Query: 443 KVRNNLCEFI----------TSEFQGFVPNSTMATNP---CRVQYCSQ-----------E 478
KV L + + +S + N + + P +V Y SQ +
Sbjct: 370 KVMEGLKKLLGKLNEELETGSSTPVALIFNGSFTSRPFTSTQVSYNSQVTSSGEYKSYFD 429
Query: 479 ILVVREELLSKMCRNC--IKFPEEGD-ISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVL 535
L E S++C C + P + D S V+K + + PK
Sbjct: 430 SLASILEPFSELCATCKFVFVPGDNDPWSSVVTKGSNS------VWPKF----------- 472
Query: 536 SPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF------- 588
LPK + V + +NP ++ Y + E+L+VR++L + RN I
Sbjct: 473 --RLPKIFGNRLTRLVKDIEWCSNPSKLIYLTHEVLLVRDDLAGRFRRNDISHISKIKEN 530
Query: 589 --PEEGDI----------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYP 630
+EG++ ++ V+TL+ QG L ++ P+ + L+L P
Sbjct: 531 IEADEGELEIDKLSKSKIAPDVLEARKVVKTLLDQGYLSPFIQSIRPLVANYANMLNLIP 590
Query: 631 LPDLVILGDQL-NAYTIQNTDCIFINP--VFHNTVRNAFE 667
LP L++L D + + +C +NP F N N E
Sbjct: 591 LPTLLMLADTTCPRFDLIYENCHVLNPGKFFDNNKFNYME 630
>gi|255954821|ref|XP_002568163.1| Pc21g11310 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589874|emb|CAP96028.1| Pc21g11310 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 762
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 21/165 (12%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
V+ AFD+P+ Y+ D K F+ V K L K+ LFR+RYN++ QR LR+ F +
Sbjct: 193 LKVVDAFDLPRLTYNVDKKYFEAVKSKPSLFPSPAYKTALFRDRYNLVYQRLLRNESFQS 252
Query: 300 INPNAD---------------SVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDP 344
A S KL + L+ + +H ++LG+++ L D
Sbjct: 253 SLGVAGVPSLQRSSSNLAHRQSYKLTPIANLLGRSGTSH--LLLGLLAISPTGDLSLVDL 310
Query: 345 TGIVQLDLSQTSYHP---GLYTENCIVLVEGHY-KDQILHVDALG 385
TG V LDLS P + IVLV+G Y +++++ ALG
Sbjct: 311 TGSVALDLSHARMIPEDGAWFAPGMIVLVDGIYEEEEMVKGAALG 355
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/122 (31%), Positives = 61/122 (50%), Gaps = 16/122 (13%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
V+ AFD+P+ Y+ D K F+ V K L K+ LFR+RYN++ QR LR+ F +
Sbjct: 193 LKVVDAFDLPRLTYNVDKKYFEAVKSKPSLFPSPAYKTALFRDRYNLVYQRLLRNESFQS 252
Query: 94 INPNADSVKLDWVEYLM-SLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
S+ + V L S +N+ H+ Q + + LLG+ + HL LL L+
Sbjct: 253 ------SLGVAGVPSLQRSSSNLAHR--------QSYKLTPIANLLGRSGTSHL-LLGLL 297
Query: 153 WV 154
+
Sbjct: 298 AI 299
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 594 ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YTIQNTDCI 652
+++ V+T++ QGT+ PL L PV W AL LYPLP ++L D A + + C
Sbjct: 668 MARRLVKTILDQGTISPFPLPLRPVLWDHASALQLYPLPTALVLADPEAAPFCMTYEGCH 727
Query: 653 FINP 656
+NP
Sbjct: 728 VMNP 731
>gi|449504625|ref|XP_002200480.2| PREDICTED: protein kintoun [Taeniopygia guttata]
Length = 678
Score = 66.2 bits (160), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 44/61 (72%)
Query: 598 FVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPV 657
FV+T++SQG L LPL + PV+W+ +L +YPLPDL++ D+ + +T+ ++DC+ INP
Sbjct: 254 FVKTILSQGHLSPLPLYVSPVFWAYDYSLRVYPLPDLLVTADKHDPFTVTSSDCLCINPA 313
Query: 658 F 658
Sbjct: 314 L 314
>gi|119480429|ref|XP_001260243.1| DNA polymerase epsilon subunit B, putative [Neosartorya fischeri
NRRL 181]
gi|119408397|gb|EAW18346.1| DNA polymerase epsilon subunit B, putative [Neosartorya fischeri
NRRL 181]
Length = 783
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 75/154 (48%), Gaps = 20/154 (12%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNI- 300
++ AFD+P+ Y+ D K F+L K L + K+ +FR+RYNI+ QR LR+ F +
Sbjct: 217 IVEAFDMPRLTYNVDKKYFELTKSKATLFPQASHKTSVFRDRYNIVHQRLLRNETFQSSL 276
Query: 301 ---------NPNADSV-----KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
P++ +L + L+ + +H ++LG++S L D TG
Sbjct: 277 SYSTGHSLKRPSSSFAPTQCYRLTPIANLLGRSGTSH--LLLGLLSISPAGDLSLVDLTG 334
Query: 347 IVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
V LD+S P + +VLV+G Y+++
Sbjct: 335 SVALDMSHARTIPDDGAWFAPGMVVLVDGVYEEE 368
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
++ AFD+P+ Y+ D K F+L K L + K+ +FR+RYNI+ QR LR+ F +
Sbjct: 217 IVEAFDMPRLTYNVDKKYFELTKSKATLFPQASHKTSVFRDRYNIVHQRLLRNETFQS 274
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/63 (34%), Positives = 36/63 (57%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ V+T++ QGT+ PL++ PV W +L LYPLP IL D ++ + + C
Sbjct: 690 ARKLVKTILDQGTMSPFPLSMRPVLWDHAASLQLYPLPTAFILADPEVAPFCMTYEGCHV 749
Query: 654 INP 656
+NP
Sbjct: 750 MNP 752
>gi|340056581|emb|CCC50916.1| putative DNA polymerase epsilon subunit b [Trypanosoma vivax Y486]
Length = 530
Score = 65.9 bits (159), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 93/378 (24%), Positives = 148/378 (39%), Gaps = 54/378 (14%)
Query: 280 FRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSL----TNVNHKTVVLGMISQLK 335
R+RY R+R LR LF + S+ D + S+ T+ + VLG++
Sbjct: 122 LRQRYLFARRRCLRSGLFRR-DLGKQSIDRDQPPLVPSIALEGTDPSETLAVLGILIDNA 180
Query: 336 ENRYFLEDPTGIVQLDLSQ-TSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
+ Y LED G V+L L + Y G+ + +V+ +G + + L V +L PP E ++
Sbjct: 181 DGTY-LEDLYGRVKLVLHRDVRYSMGMVGDGLLVVAKGQWMNGALTVASLSLPPAEKRED 239
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
+ G G PV V EK ++IV+LS ++LD L F S
Sbjct: 240 TLKDTGPDCDLFGRRPVD---VAVAFAREKMALRSVIVVLSQIYLDQHSTVTRLASFF-S 295
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF--------PEEGDISKH 506
E Q N V+ I+ L+ +C I + P EG ++
Sbjct: 296 EMQ----------NRSEVELADTTIV-----LVGNLCSTAIHYDDVSHLPEPFEG-CDRY 339
Query: 507 VSKNNGEKDIIFLIVPKIY-------VEGTVTSKVLSPALPKF-ITSEF----QGFVPNS 554
S + +I P + V G + L LP+ I S F Q +
Sbjct: 340 RSLMDTLATVILAHAPNVAQYTQVVIVPGPGDATALLGVLPQPPIVSSFAKTLQTRLKRV 399
Query: 555 TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDISKHF---VRTLVSQGTLV 609
A NPCR+++ + EI++ R + + F EG + F +T++ Q L
Sbjct: 400 VFAPNPCRLRFFTHEIVIARRDFSRSLRERARVFSHYSEGTATTIFDDVAKTIMDQAHLA 459
Query: 610 SLPLNLCPVYWSQYGALS 627
P + W G LS
Sbjct: 460 --PEVKEGILWKADGVLS 475
>gi|393241100|gb|EJD48624.1| hypothetical protein AURDEDRAFT_150992 [Auricularia delicata
TFB-10046 SS5]
Length = 3478
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 4/134 (2%)
Query: 502 DISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPC 561
D++ +S +D F+ VP T P LP + S + VP + +NPC
Sbjct: 45 DLADIISSYPDFRDTHFVFVPGPLDLCGSTVFPRPPILPSCV-SRIKVKVPKAHFMSNPC 103
Query: 562 RVQYCSQEILVVREELLSKMCRNCIKFPE---EGDISKHFVRTLVSQGTLVSLPLNLCPV 618
R++ +QEI++ RE++++KM RN I + + D+ K+ +TL+ Q L LP N+ P+
Sbjct: 104 RIKVFAQEIIIFREDMMAKMLRNLITHKQGVSDADLKKYLFQTLLDQCHLSPLPQNVQPI 163
Query: 619 YWSQYGALSLYPLP 632
+ LYPLP
Sbjct: 164 LPEFDHSFRLYPLP 177
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 34/51 (66%), Gaps = 3/51 (5%)
Query: 460 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE---EGDISKHV 507
VP + +NPCR++ +QEI++ RE++++KM RN I + + D+ K++
Sbjct: 93 VPKAHFMSNPCRIKVFAQEIIIFREDMMAKMLRNLITHKQGVSDADLKKYL 143
>gi|407862952|gb|EKG07790.1| DNA polymerase epsilon subunit b, putative [Trypanosoma cruzi]
Length = 534
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 79/321 (24%), Positives = 127/321 (39%), Gaps = 33/321 (10%)
Query: 279 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLT----NVNHKTVVLGMISQL 334
+ R+RY R+R LR LF + N S+ D L ++ + + VLGMI +
Sbjct: 123 VLRQRYLFTRRRCLRSGLFRR-DLNKQSLNQDLPPLLSTIALEGIDPSENVAVLGMIRR- 180
Query: 335 KENRYFLEDPTGIVQLD-LSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASK 393
N LED G V+L L G + VLV G + +L V ++ PP E +
Sbjct: 181 GFNEICLEDLHGRVRLTFLGGVPPLIGFVGDGFFVLVRGQWSSGVLVVVSIELPPAERRE 240
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT 453
++ G+ G P + + + EKN+ A+I+++S VHLD N L F
Sbjct: 241 DTLRDIGSDYDLFGYRPTDMAAAH---LREKNSLQAVIIVMSHVHLDQTSTVNKLVCFF- 296
Query: 454 SEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGD----------- 502
E Q + M T V S L + + +S + P EG
Sbjct: 297 KEMQNRTESELMNTTLVMVGDFSS--LTIHYDDISHLPD-----PFEGSNRYKLLMDTLA 349
Query: 503 --ISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNP 560
I+ H ++ +VP + + P + T Q + A NP
Sbjct: 350 MVITTHAPSVAQHTQVV--LVPGSNDVTGLLGVLPQPPIVSVFTRTLQARLKKVFFAPNP 407
Query: 561 CRVQYCSQEILVVREELLSKM 581
CR+++ + EI+V R + +
Sbjct: 408 CRLRFFTHEIVVTRRDFFRSL 428
>gi|50421789|ref|XP_459452.1| DEHA2E02838p [Debaryomyces hansenii CBS767]
gi|74602230|sp|Q6BQR8.1|DPB2_DEBHA RecName: Full=DNA polymerase epsilon subunit B; AltName: Full=DNA
polymerase II subunit 2
gi|49655120|emb|CAG87668.1| DEHA2E02838p [Debaryomyces hansenii CBS767]
Length = 669
Score = 65.5 bits (158), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 108/531 (20%), Positives = 204/531 (38%), Gaps = 134/531 (25%)
Query: 209 PVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV--DKK 266
PV+N E N +NW + F VI+ + P + YD K+ +
Sbjct: 126 PVNNAE--NTLNW---------------QDYFKVINPDEQPNYKYDKHRKQLSFIPSTNA 168
Query: 267 RKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN------------INPNADSVKLDWVEY 314
++L + ++ F RY++I R R+ F ++ N + ++ ++
Sbjct: 169 KRLANNLNSNVDYFNNRYHLISDRLSRNENFQKPSFSSISSISKSLSHNNKTNEITLIKN 228
Query: 315 LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGH 373
++ K ++ G++S+ + + LED T ++L+L+Q G Y V+VEG
Sbjct: 229 VLGRDG--SKFILFGLLSKNANDDFILEDSTDHIELNLTQAYKTEGSFYCPGMFVIVEGI 286
Query: 374 YK------------DQILHVDALGFPPPEASKNSRLYFGNQNIWG-------GPSPVSLK 414
Y HV +G PP E + S +GN + G + +
Sbjct: 287 YSASGGSMSNANVIGGCFHVSNIGHPPAERRELSMENYGNLDFMGINRDNDTNNNDNHIL 346
Query: 415 SVNRMTK-----MEKNNENAMIVIL-SDVHLDN-----------DKVRNNLCEFITSE-- 455
VN+ K +EK N ++IL SD LD+ K+ ++L + T++
Sbjct: 347 RVNKSLKKKLVSLEKTLVNHKLIILGSDCFLDDLKILDGIKKLFGKIESSLIDDETNQPL 406
Query: 456 ----FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN 511
F N TN + E + LS + N FP N
Sbjct: 407 VIVLIGSFTSNPLTPTNSSVANVSNTENYKSNFDNLSNILSN---FP------------N 451
Query: 512 GEKDIIFLIVPKI--------YVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT--NPC 561
+ + ++P I + G+ + ++PK T+ + +P + NP
Sbjct: 452 IVQKVKIALIPGINDPWQSSHSLGGSNLNAFPQRSIPKIFTNRLERLLPKGNLIAGWNPL 511
Query: 562 RVQYCSQEILVVREELLSKMCRNCIKFPEEGDI--------------------------- 594
R+ Y SQEI+++++++++K RN I F + ++
Sbjct: 512 RINYLSQEIVLMKDDIINKFKRNDIIFSNDLELEQLKLQKDKNDDGLIHATDINTKEPHI 571
Query: 595 ------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
++ V+T++ QG L ++ + + +L + PLP ++IL D
Sbjct: 572 SPKIKQARKLVKTILDQGNLQPFLKDIRIINTNFDYSLRIEPLPTILILND 622
>gi|367023687|ref|XP_003661128.1| hypothetical protein MYCTH_2300172 [Myceliophthora thermophila ATCC
42464]
gi|347008396|gb|AEO55883.1| hypothetical protein MYCTH_2300172 [Myceliophthora thermophila ATCC
42464]
Length = 829
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/151 (30%), Positives = 70/151 (46%), Gaps = 18/151 (11%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN-- 299
VI+AF+ P++ Y+ K+F+ + K L + K++ FR RYN I QR LR+ F
Sbjct: 237 VINAFEQPRYTYNVAKKQFEKIASKPSLLPPASHKTEAFRNRYNAIHQRLLRNEAFQTSA 296
Query: 300 -----------INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIV 348
S K+ V L+ NH ++LGM+ L + D TG +
Sbjct: 297 VTSARLTALRRSGSTMQSHKITPVANLLGRHGTNH--MLLGMLVILPTGNLAISDLTGTI 354
Query: 349 QLDLSQTSYHP---GLYTENCIVLVEGHYKD 376
LDLS P +T IVL++G Y++
Sbjct: 355 GLDLSHAVAIPEDSAWFTPGMIVLIDGVYEE 385
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 35/117 (29%), Positives = 56/117 (47%), Gaps = 15/117 (12%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI+AF+ P++ Y+ K+F+ + K L + K++ FR RYN I QR LR+ F
Sbjct: 237 VINAFEQPRYTYNVAKKQFEKIASKPSLLPPASHKTEAFRNRYNAIHQRLLRNEAFQTS- 295
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
S +L + S T +HK + + LLG+H + H+ L L+
Sbjct: 296 -AVTSARLTALRRSGS-TMQSHKITPV------------ANLLGRHGTNHMLLGMLV 338
Score = 40.0 bits (92), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIF 653
++ V+TL+ QG L + PV+W AL LYPLP ++L D + + C
Sbjct: 733 ARRLVKTLLDQGYLAPFRQAIRPVHWDYASALYLYPLPTALVLVDTTAPPFCVTYEGCHV 792
Query: 654 INP 656
+NP
Sbjct: 793 MNP 795
>gi|336275141|ref|XP_003352324.1| hypothetical protein SMAC_02758 [Sordaria macrospora k-hell]
gi|380092403|emb|CCC10180.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 854
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 53/195 (27%), Positives = 84/195 (43%), Gaps = 19/195 (9%)
Query: 197 HNLVPLILHPVIPVSNREQNNI--MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYD 254
H L L PV ++ + N M+ L+ + E + + VI AFD P+ Y+
Sbjct: 192 HAHTRLGLRPVQSLTRDDSNASFGMSGLEFAEEPEDDSVRDVRRWLKVIHAFDQPRLTYN 251
Query: 255 PDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSV------- 307
K F+ K L + K+ FR RYN+I QR LR+ F + + S+
Sbjct: 252 VGKKHFERDPSKPSLLPAASHKTDAFRNRYNVIHQRILRNEAFQSSSVQGSSLRQKTNAN 311
Query: 308 -----KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP--- 359
K+ + L+ +H ++LGM+ L + D TG + LDLS P
Sbjct: 312 GLSSHKITPIANLLGRHGTHH--MLLGMLVVLPTGSLAISDLTGTIVLDLSHAVAIPEDS 369
Query: 360 GLYTENCIVLVEGHY 374
+T +VL++G Y
Sbjct: 370 AWFTPGMMVLIDGVY 384
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 67/152 (44%), Gaps = 19/152 (12%)
Query: 3 LHRDNPSCTYDL--IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKK 60
L RD+ + ++ + +EF E + + VI AFD P+ Y+ K F+ K
Sbjct: 205 LTRDDSNASFGMSGLEFA-EEPEDDSVRDVRRWLKVIHAFDQPRLTYNVGKKHFERDPSK 263
Query: 61 RKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTV 120
L + K+ FR RYN+I QR LR+ F + + S++ KT
Sbjct: 264 PSLLPAASHKTDAFRNRYNVIHQRILRNEAFQSSSVQGSSLR--------------QKTN 309
Query: 121 VLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
G+ S I + LLG+H + H+ L L+
Sbjct: 310 ANGLSSHKITPI--ANLLGRHGTHHMLLGMLV 339
>gi|310793629|gb|EFQ29090.1| DNA polymerase alpha/epsilon subunit B [Glomerella graminicola
M1.001]
Length = 801
Score = 65.1 bits (157), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 52/186 (27%), Positives = 83/186 (44%), Gaps = 26/186 (13%)
Query: 212 NREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA 271
+ +Q+ M+ L + + I + +VI A+D P+F Y+ K F+ K L
Sbjct: 195 DSQQSFGMSSLGVEEDDEEENIRDARKWLNVIDAYDHPRFSYNVAKKHFERETSKPSLLP 254
Query: 272 DSDAKSKLFRERYNIIRQRTLRHSLFNN---INPNADSVKLDWVEYLMSLTNVNHKT--- 325
+ K+ LFR RYN+I QR LR+ F + A S+K S +NHK
Sbjct: 255 PAKNKTALFRNRYNVIHQRLLRNESFQTSAVASARAPSLKRS------SSNQLNHKITPI 308
Query: 326 -----------VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVE 371
++LGM++ L + D T + LD+SQ P + IVLV+
Sbjct: 309 SNLLGRHGSHHMLLGMLNVLPAGGLAISDLTATIALDVSQAVAIPEDSAWFAPGMIVLVD 368
Query: 372 GHYKDQ 377
G Y+++
Sbjct: 369 GVYEEE 374
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 66/153 (43%), Gaps = 22/153 (14%)
Query: 3 LHRDNPSCTYDLIEFTTNECCRTE-INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR 61
L R++ ++ + E E I + +VI A+D P+F Y+ K F+ K
Sbjct: 191 LVREDSQQSFGMSSLGVEEDDEEENIRDARKWLNVIDAYDHPRFSYNVAKKHFERETSKP 250
Query: 62 KLCADSDAKSKLFRERYNIIRQRTLRHSLFNN---INPNADSVKLDWVEYLMSLTNVNHK 118
L + K+ LFR RYN+I QR LR+ F + A S+K S +NHK
Sbjct: 251 SLLPPAKNKTALFRNRYNVIHQRLLRNESFQTSAVASARAPSLKRS------SSNQLNHK 304
Query: 119 TVVLGMISQLKENITTSGLLGKHQSPHLNLLCL 151
+ S LLG+H S H+ L L
Sbjct: 305 ITPI------------SNLLGRHGSHHMLLGML 325
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 589 PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQ 647
P++ ++ V+T++ QG L ++ PV+W AL LYPLP ++L D + I
Sbjct: 703 PQDVHTARKLVKTVLDQGYLAPFRQSIRPVHWDYATALHLYPLPTSMVLVDTTAPPFCIT 762
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 763 YEGCHVMNP 771
>gi|116179832|ref|XP_001219765.1| hypothetical protein CHGG_00544 [Chaetomium globosum CBS 148.51]
gi|88184841|gb|EAQ92309.1| hypothetical protein CHGG_00544 [Chaetomium globosum CBS 148.51]
Length = 827
Score = 64.7 bits (156), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 70/153 (45%), Gaps = 19/153 (12%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 298
VI AF+ P++ Y+ K F+ K L + K+ FR RYN++ QR LR+ F
Sbjct: 236 VIGAFEQPRYSYNVAKKHFEKATSKPSLLPPASHKTDAFRNRYNVVHQRLLRNESFQTSA 295
Query: 299 -----------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGI 347
+ + S K+ + L+ NH ++LGM+ L + D TG
Sbjct: 296 VTSARTTGLRRSASTTMQSHKITPISNLLGRHGTNH--MLLGMLVLLPTGNIAISDLTGT 353
Query: 348 VQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
+ LDLS P +T IVL++G Y+++
Sbjct: 354 ITLDLSHAVAIPEDSAWFTPGMIVLIDGVYEEE 386
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 64/151 (42%), Gaps = 15/151 (9%)
Query: 3 LHRDNPSCTYDLIEFTTNECCRTE-INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR 61
L RD+ ++ + +E E + + VI AF+ P++ Y+ K F+ K
Sbjct: 202 LTRDDSQASFGMSGIGFDEEPDDEGLQDVRRWLKVIGAFEQPRYSYNVAKKHFEKATSKP 261
Query: 62 KLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVV 121
L + K+ FR RYN++ QR LR+ F S + + S T +HK
Sbjct: 262 SLLPPASHKTDAFRNRYNVVHQRLLRNESFQTS--AVTSARTTGLRRSASTTMQSHKITP 319
Query: 122 LGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
+ S LLG+H + H+ L L+
Sbjct: 320 I------------SNLLGRHGTNHMLLGMLV 338
Score = 40.8 bits (94), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 594 ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCI 652
I++ V+TL+ QG L ++ PV+W A+ LYPLP ++L D + + C
Sbjct: 731 IARKLVKTLLDQGYLAPFRQSVRPVHWDYTTAMYLYPLPTALVLVDTTAPPFCVTYEGCH 790
Query: 653 FINP 656
+NP
Sbjct: 791 VMNP 794
>gi|449299523|gb|EMC95536.1| hypothetical protein BAUCODRAFT_71065 [Baudoinia compniacensis UAMH
10762]
Length = 776
Score = 64.3 bits (155), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 49/155 (31%), Positives = 70/155 (45%), Gaps = 24/155 (15%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VISA D P+F YD D K F + K K+ +FRERYNII QR LR+ F +
Sbjct: 199 VISASDQPRFSYDADKKHFVQLTNKPSFFPPPSHKTAVFRERYNIIHQRLLRNEAFQAPS 258
Query: 302 PNADSV--------------KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGI 347
++ S K+ + L+ +H ++LGM+ L DP+G
Sbjct: 259 FSSRSTTLKRTDSTTTQQFYKITPIANLLGRGGTSH--LLLGMLVIAPTGTLALNDPSGS 316
Query: 348 VQLDLSQTSYHP------GLYTENCIVLVEGHYKD 376
+ LDL HP + IVLV+G Y++
Sbjct: 317 IPLDLQHA--HPLQGEDSSYFCPGMIVLVDGVYEE 349
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 32/57 (56%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
VISA D P+F YD D K F + K K+ +FRERYNII QR LR+ F
Sbjct: 199 VISASDQPRFSYDADKKHFVQLTNKPSFFPPPSHKTAVFRERYNIIHQRLLRNEAFQ 255
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/203 (24%), Positives = 85/203 (41%), Gaps = 31/203 (15%)
Query: 458 GFVPNSTMATNPCRVQYC--SQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
G + +NP R+ + E++V R+++ S++ R + G +K K NGE D
Sbjct: 568 GLDGEAIWTSNPTRLSLFGPAHEMVVFRDDVTSRLRRTAVSV---GQAAKR--KGNGEPD 622
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
P+ + ++S ALP T+ ++ + +
Sbjct: 623 AS-ASQPQQENDDDNDDTLMSGALPMRGTT-------------------LGDEDTQMADD 662
Query: 576 ELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQY-GALSLYPLPDL 634
L + + + ++ + +K + +L+ Q TL PL PVYW ALSLYPLP
Sbjct: 663 NLATPVPSSTTEYTTQ--QAKKLILSLLPQSTLSPFPLATRPVYWDYAPSALSLYPLPHT 720
Query: 635 VILGD-QLNAYTIQNTDCIFINP 656
+IL D + + + C INP
Sbjct: 721 LILADAEAEPFALTFEGCHVINP 743
>gi|346321797|gb|EGX91396.1| DNA polymerase epsilon subunit B, putative [Cordyceps militaris
CM01]
Length = 801
Score = 63.9 bits (154), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 84/196 (42%), Gaps = 24/196 (12%)
Query: 202 LILHPVIPVSNREQNNI---MNWLKLS-SECCRTEINSEEQIFSVISAFDIPQFDYDPDL 257
L L P P+ RE +N M L + E E N VI AF+ P+ Y+
Sbjct: 168 LGLRPTGPI--REDSNASFGMTGLDVQDGEHDDDETNDPRAWLKVIDAFEQPRLYYNVSK 225
Query: 258 KKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNI-------------NPNA 304
K F+ K L + K+ FR RY++I QR LRH F + N
Sbjct: 226 KHFERDTTKPSLLPKASHKTAAFRNRYDVIHQRLLRHESFQTPTVSSSRSHDSQKGSSNP 285
Query: 305 DSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GL 361
++K+ + ++ NH ++LG ++ L + D TG + LD+ Q P
Sbjct: 286 QALKITPIANMLGRHGSNH--MLLGQLNVLPTGGLAISDVTGTIALDVKQAVAIPEDSAW 343
Query: 362 YTENCIVLVEGHYKDQ 377
+ IVLV+G Y+++
Sbjct: 344 FCPGMIVLVDGVYEEE 359
Score = 45.8 bits (107), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 32/68 (47%)
Query: 26 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 85
E N VI AF+ P+ Y+ K F+ K L + K+ FR RY++I QR
Sbjct: 200 ETNDPRAWLKVIDAFEQPRLYYNVSKKHFERDTTKPSLLPKASHKTAAFRNRYDVIHQRL 259
Query: 86 LRHSLFNN 93
LRH F
Sbjct: 260 LRHESFQT 267
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 46/210 (21%), Positives = 79/210 (37%), Gaps = 53/210 (25%)
Query: 460 VPNSTM-ATNPCRVQYCS--QEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
VP S + A+NP RV E+++ R+++ +++ R ++ +KD
Sbjct: 602 VPGSAVWASNPARVSLFGPNHELVLFRDDMSARLRRTSVRL---------------KKDT 646
Query: 517 IFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATN-------PCRVQ--YCS 567
Y GT + ++ Q P +M + P R Q +
Sbjct: 647 --------YGSGTAA---------ETDNAQTQAVAPPDSMEVDKDDDVAEPRRGQPPQPT 689
Query: 568 QEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALS 627
QE V P++ ++ V+TL+ QG L P++W AL
Sbjct: 690 QEAPAV--------TTTTTSLPQDVRSAQKLVKTLLDQGHLAPFRTATRPIHWDFASALH 741
Query: 628 LYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
LYPLP ++L D + + C +NP
Sbjct: 742 LYPLPTAMVLVDASAPPFCVTYEGCHVMNP 771
>gi|297826605|ref|XP_002881185.1| hypothetical protein ARALYDRAFT_902197 [Arabidopsis lyrata subsp.
lyrata]
gi|297327024|gb|EFH57444.1| hypothetical protein ARALYDRAFT_902197 [Arabidopsis lyrata subsp.
lyrata]
Length = 322
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 76/308 (24%), Positives = 127/308 (41%), Gaps = 61/308 (19%)
Query: 328 LGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFP 387
+G+ISQL++ ++LE + V++DLS+ G T + + L Y+D V A GFP
Sbjct: 1 MGLISQLEDGHFYLEYLSACVKIDLSKAICLFGTSTIDNLEL----YRDSQKIVIACGFP 56
Query: 388 PPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNN 447
E ++ L ++N + G + + R+ +E+ N VI L+ ++
Sbjct: 57 HLE-DRDKTLSIHSENYFFGSGRPTKDEMIRLADLERKAVNDTFVIW----LEGEESITV 111
Query: 448 LCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHV 507
L F + E VP + +CS+ P + KH
Sbjct: 112 LDGFESVEI---VPTLCVFMG----NFCSR--------------------PSRVAMRKHA 144
Query: 508 SKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS 567
S ++P+ LP++ T E + +PN+ ++NPCR + CS
Sbjct: 145 SLYPTRP---LTVLPRC-------------GLPEYSTEELREVIPNAIFSSNPCR-RLCS 187
Query: 568 QEILVVREELLSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYG 624
+ + L +M R+ + P E D +H V L+ Q L LPL P+ W+
Sbjct: 188 SD-----KTLWYRMIRSRLLKPSSEETNDPFEHLVSKLIHQSHLCPLPLLFQPIIWNYDH 242
Query: 625 ALSLYPLP 632
L LYP P
Sbjct: 243 CLRLYPTP 250
>gi|71652067|ref|XP_814698.1| DNA polymerase epsilon subunit B [Trypanosoma cruzi strain CL
Brener]
gi|70879693|gb|EAN92847.1| DNA polymerase epsilon subunit B, putative [Trypanosoma cruzi]
Length = 534
Score = 63.9 bits (154), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 77/314 (24%), Positives = 124/314 (39%), Gaps = 19/314 (6%)
Query: 279 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLT----NVNHKTVVLGMISQL 334
+ R+RY R+R LR LF + N S+ D L ++ + + VLGMI +
Sbjct: 123 VLRQRYLFTRRRCLRSGLFRR-DLNKQSLNQDLPPLLSTIALEGIDPSENVAVLGMIRR- 180
Query: 335 KENRYFLEDPTGIVQLD-LSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASK 393
N LED G V+L L G + VLV G + +L V ++ PP E +
Sbjct: 181 GFNEICLEDLHGRVRLTFLGGVPPLIGFVGDGFFVLVRGQWSSGVLVVVSIELPPAERRE 240
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT 453
++ G+ G P + + + EKN+ A+I+++S VHLD N L F
Sbjct: 241 DTLRDIGSDYDLFGYRPTDMAAAH---LREKNSLQAVIIVMSHVHLDQTSTVNKLVCFF- 296
Query: 454 SEFQGFVPNSTMATNPCRV-QYCSQEILVVREELLSKMCRNCIKFPEEGD-----ISKHV 507
E Q + M T V + S I L ++ D I+ H
Sbjct: 297 KEMQNRTESELMNTTLVMVGDFSSSTIHYDDISHLPDPFEGSNRYKLLMDTLAMVITTHA 356
Query: 508 SKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCS 567
++ +VP + + P + T Q + A NPCR+++ +
Sbjct: 357 PSVAQHTQVV--LVPGSNDVTGLLGVLPQPPIVSVFTRTLQARLKKVFFAPNPCRLRFFT 414
Query: 568 QEILVVREELLSKM 581
EI+V R + +
Sbjct: 415 HEIVVTRRDFFRSL 428
>gi|320590328|gb|EFX02771.1| oxysterol-binding protein 1 [Grosmannia clavigera kw1407]
Length = 1919
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 113/534 (21%), Positives = 190/534 (35%), Gaps = 136/534 (25%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
VI AFD P+ L K L + K+ +FR R+N+I QR LR+ +F +
Sbjct: 277 LQVIGAFDQPRM----------LDTSKPSLLPNISQKTSVFRNRFNVIHQRLLRNDMFQS 326
Query: 300 IN-PNADSV-----------------KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFL 341
A +V ++ V L+ +H ++LGM+ L + +
Sbjct: 327 SAVAEARAVATLQSASLSSSSLSQTHRITPVANLLGRHGTHH--MLLGMLVVLPTGKLSI 384
Query: 342 EDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQILHVDA--------------- 383
D + + LDLS P + IVLV+G Y+++
Sbjct: 385 CDLSASITLDLSSAVAIPEDSAWFAPGMIVLVDGVYEEEEESAGRGLNGATGVGGTIGGR 444
Query: 384 -----LGFPPPEASKNSRLYFG-----NQNIWGGPSPVSLKSVN-------RMTKME--- 423
+G PP E + S G + I GG + V RM K+E
Sbjct: 445 FQAFFMGQPPSEKRRVSLGISGPDGGQDHTIGGGFGWIDFLGVGSQRAVGARMRKLEQRL 504
Query: 424 -------------KNNENAMIVILSDVHLDNDKVRNNLCEFI---TSEFQGFVPNSTMA- 466
++ +V+L +V+LD + L + + SE +G P + +
Sbjct: 505 LQRQQRRGVETQPQHPGRHRVVVLGEVNLDQPQALQALKKILGLYASEAEGSTPVAFVLA 564
Query: 467 ---TNPCRVQYCSQEILVVREELLSKMCRNCIKFPE----------EGDISKHVSKNNGE 513
T + + +E + FP GD VS
Sbjct: 565 GSFTEHAVMARGGSGGSIEYKEYFDALASTLADFPSLLQSATFVFVPGDNDGWVSSFGAG 624
Query: 514 KDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQ-----GFVPNSTMATNPCRVQY--C 566
+ P+ V TS+V F T+ + G + TNP R+
Sbjct: 625 AAVPL---PRKPVPDLFTSRVRR----AFATANAEAGLADGRGGEAVWTTNPSRLSLFGP 677
Query: 567 SQEILVVREELLSKMCRNCIKF-----------------------PEEGDISKHFVRTLV 603
S EI++ R+++ S++ R ++ P + ++ V+T++
Sbjct: 678 SHEIVLFRDDISSRLRRTAVRLASKAGEMEVDESQGSHGSQNTPIPHDLQTARKLVKTVL 737
Query: 604 SQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINP 656
QG L + PV+W GAL LYPLP +++L D + + C +NP
Sbjct: 738 DQGYLAPFRQPIRPVHWDFAGALHLYPLPTVMVLIDTTTPPFCVTYEGCHVMNP 791
>gi|261194964|ref|XP_002623886.1| DNA polymerase epsilon subunit B [Ajellomyces dermatitidis
SLH14081]
gi|239587758|gb|EEQ70401.1| DNA polymerase epsilon subunit B [Ajellomyces dermatitidis
SLH14081]
Length = 747
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 56/267 (20%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
++SAF+ + Y+ K F ++ L ++ + R+RYN+I QR LR+ F
Sbjct: 169 ILSAFEQNRPVYNISKKNFDIITTPPSLFPPPSQRANILRDRYNLIYQRLLRNETFQIPL 228
Query: 298 ----NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLS 353
++++ S KL + L+ T +H ++LG++S L DPTG + LD++
Sbjct: 229 QGSTSSVSSMQRSYKLTSIANLLGRTGTSH--LLLGLLSMSPAGDLSLTDPTGSITLDIT 286
Query: 354 QTSYHP---GLYTENCIVLVEGHYKDQ--------------------ILHVDALGFPPPE 390
P + IVLV+G Y+++ V ++G PP E
Sbjct: 287 HAQAVPEDGAWFAPGMIVLVDGIYREEEVISGSTLNGSSGIGGTIGGKFTVASVGGPPCE 346
Query: 391 ASKNS-----RLYFGNQNIWGGPSPVSLKSVN-------RMTKMEK-------NNEN--- 428
+ S R+ G + + GG V V RM ++EK NE
Sbjct: 347 RREASTGAGHRVEDGGRAVEGGFGWVDFLGVGSERSKGYRMRQIEKICLRKGQPNEQQDI 406
Query: 429 -AMIVILSDVHLDNDKVRNNLCEFITS 454
IV++S+V+LD K L S
Sbjct: 407 RKRIVVMSEVNLDVPKTEGALTHVFES 433
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
S+ V+T++ Q L P ++ P+ W L LYPLP +IL D + + + C
Sbjct: 654 SRKLVKTILDQSHLSPFPQHIRPILWDYAPVLHLYPLPTAMILADSSADPFAVTYEGCHV 713
Query: 654 INP 656
+NP
Sbjct: 714 MNP 716
>gi|239610748|gb|EEQ87735.1| DNA polymerase epsilon subunit B [Ajellomyces dermatitidis ER-3]
gi|327348810|gb|EGE77667.1| DNA polymerase epsilon subunit B [Ajellomyces dermatitidis ATCC
18188]
Length = 747
Score = 63.5 bits (153), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/267 (25%), Positives = 111/267 (41%), Gaps = 56/267 (20%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
++SAF+ + Y+ K F ++ L ++ + R+RYN+I QR LR+ F
Sbjct: 169 ILSAFEQNRPVYNISKKNFDIITTPPSLFPPPSQRANILRDRYNLIYQRLLRNETFQIPL 228
Query: 298 ----NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLS 353
++++ S KL + L+ T +H ++LG++S L DPTG + LD++
Sbjct: 229 QGSTSSVSSMQRSYKLTSIANLLGRTGTSH--LLLGLLSMSPAGDLSLTDPTGSITLDIT 286
Query: 354 QTSYHP---GLYTENCIVLVEGHYKDQ--------------------ILHVDALGFPPPE 390
P + IVLV+G Y+++ V ++G PP E
Sbjct: 287 HAQAVPEDGAWFAPGMIVLVDGIYREEEVISGSTLNGSSGIGGTIGGKFTVASVGGPPCE 346
Query: 391 ASKNS-----RLYFGNQNIWGGPSPVSLKSVN-------RMTKMEK-------NNEN--- 428
+ S R+ G + + GG V V RM ++EK NE
Sbjct: 347 RREASTGAGHRVEDGGRAVEGGFGWVDFLGVGSERSKGYRMRQIEKICLRKGQPNEQQDI 406
Query: 429 -AMIVILSDVHLDNDKVRNNLCEFITS 454
IV++S+V+LD K L S
Sbjct: 407 RKRIVVMSEVNLDVPKTEGALTHVFES 433
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
S+ V+T++ Q L P ++ P+ W L LYPLP +IL D + + + C
Sbjct: 654 SRKLVKTILDQSHLSPFPQHIRPILWDYAPVLHLYPLPTAMILADSSADPFAVTYEGCHV 713
Query: 654 INP 656
+NP
Sbjct: 714 MNP 716
>gi|358391897|gb|EHK41301.1| hypothetical protein TRIATDRAFT_295232 [Trichoderma atroviride IMI
206040]
Length = 774
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 116/570 (20%), Positives = 208/570 (36%), Gaps = 144/570 (25%)
Query: 219 MNWLKLSSECCR-TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKS 277
M+ L + E E N VI A++ P+ Y+ D K F+ K L + K+
Sbjct: 187 MSGLGMQEEAGDDEETNDARAWLKVIDAYEQPRLLYNVDKKHFERDTAKPSLLPPASHKT 246
Query: 278 KLFRERYNIIRQRTL--------------RHSLFNNINPNADSVKLDWVEYLMSLTNVNH 323
+FR RY++I QR L RH+L +++ N S+K+ + L+ NH
Sbjct: 247 TVFRNRYHVIHQRLLRNESFQVSAVTSSRRHTLQRSLS-NQQSLKITPIANLLGRHGSNH 305
Query: 324 KTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQILH 380
++LG ++ L + D TG + LDL+Q P + +VLV+G Y+++
Sbjct: 306 --MLLGQLNILPTGDLAVSDLTGTIALDLTQAVAIPEDSAWFCPGMMVLVDGVYEEEEES 363
Query: 381 VDA--------------------LGFPPPEASKNSRLYFG------NQNIWGGPSPVSLK 414
V +G PP E K++ G +Q I GG +
Sbjct: 364 VGKGLSGSSGVGGTLGGRFQGFFIGQPPCEKRKSTLGISGPDGNDHDQTIGGGFGWIDFL 423
Query: 415 SVN-------RMTKMEKN----------NENAMIVILSDVHLDNDKVRNNLCEFIT---S 454
+ +M ++E+ +VI+ +++LD + L + ++ +
Sbjct: 424 GIGSERAIGSKMRRLERRLLPSSLDQDMPSRNRLVIIGEINLDQPRALQALRKILSLYAA 483
Query: 455 EFQGFVPNS-TMATNPCRVQYCSQEILVVR---------EELLSKMCRNCIKFPE----- 499
E +G P + +A N +Q ++ R +E + FP
Sbjct: 484 EPEGTSPLTFVLAGN------FTQHAVMARGGSGGSIEYKEYFDALASTFSDFPTLLESS 537
Query: 500 -----EGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNS 554
GD VS G + +P+ V TS++ + G ++
Sbjct: 538 TFVFVPGDNDGWVSSFTGGASV---PLPRKPVPDMFTSRIRRAFAAANAEAGNTGVQGSA 594
Query: 555 TMATNPCRVQY--CSQEILVVREELLSKMCRNCIKFPEEGDISKHFVR------------ 600
+NP R+ + E+++ R+++ +++ R + H V+
Sbjct: 595 VWTSNPSRMSLFGTNHELVLFRDDISARLRRTSVTLKRTAAAESHGVQENASPEIQQDDS 654
Query: 601 -TLVSQGTL---------VSLPLNLC-----------------------PVYWSQYGALS 627
T ++ + SLPL++ PV+W AL
Sbjct: 655 TTAAAEDAMEVDSAEKPPSSLPLDIKTAQKLVKTILDQGYLSPFRQSTRPVHWDYASALH 714
Query: 628 LYPLPDLVILGDQLN-AYTIQNTDCIFINP 656
LYPLP + L D + I C +NP
Sbjct: 715 LYPLPTAMALIDTTAPPFCITYEGCHVMNP 744
Score = 46.6 bits (109), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 35/124 (28%), Positives = 56/124 (45%), Gaps = 17/124 (13%)
Query: 26 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 85
E N VI A++ P+ Y+ D K F+ K L + K+ +FR RY++I QR
Sbjct: 201 ETNDARAWLKVIDAYEQPRLLYNVDKKHFERDTAKPSLLPPASHKTTVFRNRYHVIHQRL 260
Query: 86 LRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITT-SGLLGKHQSP 144
LR+ F + ++T+ T+ + +Q IT + LLG+H S
Sbjct: 261 LRNESFQ----------------VSAVTSSRRHTLQRSLSNQQSLKITPIANLLGRHGSN 304
Query: 145 HLNL 148
H+ L
Sbjct: 305 HMLL 308
>gi|340520393|gb|EGR50629.1| hypothetical protein TRIREDRAFT_58184 [Trichoderma reesei QM6a]
Length = 783
Score = 63.5 bits (153), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 76/163 (46%), Gaps = 20/163 (12%)
Query: 232 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 291
E N VI A++ P+ Y+ D K F+ K L + K+ +FR RY++I QR
Sbjct: 201 EANDARAWLKVIDAYEQPRLIYNVDKKHFERDTAKPSLLPPASHKTTVFRNRYHVIHQRL 260
Query: 292 LR--------------HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 337
LR H+L +++ N S+K+ + L+ NH ++LG ++ L
Sbjct: 261 LRNESFQTSSVTSSRKHTLHRSLS-NQQSLKITPIANLLGRHGSNH--MLLGQLNLLPTG 317
Query: 338 RYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
+ D TG + LDLSQ P + +VLV+G Y ++
Sbjct: 318 DLAISDLTGTIALDLSQAVAIPEDSAWFCPGMMVLVDGVYGEE 360
Score = 47.0 bits (110), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 26 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 85
E N VI A++ P+ Y+ D K F+ K L + K+ +FR RY++I QR
Sbjct: 201 EANDARAWLKVIDAYEQPRLIYNVDKKHFERDTAKPSLLPPASHKTTVFRNRYHVIHQRL 260
Query: 86 LRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITT-SGLLGKHQSP 144
LR+ F S+T+ T+ + +Q IT + LLG+H S
Sbjct: 261 LRNESFQT----------------SSVTSSRKHTLHRSLSNQQSLKITPIANLLGRHGSN 304
Query: 145 HLNL 148
H+ L
Sbjct: 305 HMLL 308
>gi|402085523|gb|EJT80421.1| DNA polymerase epsilon subunit B [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 903
Score = 63.2 bits (152), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 79/180 (43%), Gaps = 23/180 (12%)
Query: 219 MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 278
M+ L + E ++ Q ++ A+D P+ Y+ K F+ K + + K+
Sbjct: 214 MSGLAVEDETDDDKLGDPRQWLKMVGAYDQPRMIYNVAKKHFERDASKPSILPPASHKTA 273
Query: 279 LFRERYNIIRQRTLRHSLF------------------NNINPNADSVKLDWVEYLMSLTN 320
LFR RYN+I QR +R+ F + + S K+ V L+
Sbjct: 274 LFRNRYNVIHQRLMRNEAFQTSAVADTKRGSKLSRSASTVASPQQSYKITPVANLLGRHG 333
Query: 321 VNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
+H ++LGM+ + L D +G + LDLSQ + P + IVL++G Y+++
Sbjct: 334 THH--MLLGMLVIMPAGDLALSDLSGTISLDLSQAATIPDDSAWFAPGMIVLIDGVYEEE 391
Score = 43.9 bits (102), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 59/133 (44%), Gaps = 10/133 (7%)
Query: 20 NECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYN 79
+E ++ Q ++ A+D P+ Y+ K F+ K + + K+ LFR RYN
Sbjct: 221 DETDDDKLGDPRQWLKMVGAYDQPRMIYNVAKKHFERDASKPSILPPASHKTALFRNRYN 280
Query: 80 IIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLG 139
+I QR +R+ F + AD+ + + ++ + Q + + LLG
Sbjct: 281 VIHQRLMRNEAFQT-SAVADTKR---------GSKLSRSASTVASPQQSYKITPVANLLG 330
Query: 140 KHQSPHLNLLCLI 152
+H + H+ L L+
Sbjct: 331 RHGTHHMLLGMLV 343
Score = 41.6 bits (96), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 591 EGDI--SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQ 647
E D+ ++ V+TL+ QG L PV+W AL LYPLP ++L D + +
Sbjct: 805 EADVRAAQKLVKTLLDQGYLAPFRTQARPVHWDHASALHLYPLPTAMVLVDATAPPFCVT 864
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 865 YEGCHVMNP 873
>gi|453084781|gb|EMF12825.1| DNA_pol_E_B-domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 792
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 49/152 (32%), Positives = 74/152 (48%), Gaps = 19/152 (12%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VISAF+ P+F +D D K F V+ K L + K+ +F+ERYNII QR LR+ F +
Sbjct: 214 VISAFEQPRFTFDMDKKHFLRVEIKPTLFPNPRQKTAVFKERYNIIHQRLLRNPAFQAPS 273
Query: 302 PNADS--------------VKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGI 347
+A K+ + L+ +H ++LGM++ L D +G
Sbjct: 274 ISAGVPTLKRHGTVTERTFYKITPIANLLGRGGSSH--LLLGMLAIAPTGTLALNDMSGS 331
Query: 348 VQLDLSQ-TSYHPG--LYTENCIVLVEGHYKD 376
+ LDL TS G + IVLV+G Y++
Sbjct: 332 ISLDLQHATSMQDGQPYFCPGMIVLVDGVYEE 363
Score = 52.8 bits (125), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 27/57 (47%), Positives = 36/57 (63%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
VISAF+ P+F +D D K F V+ K L + K+ +F+ERYNII QR LR+ F
Sbjct: 214 VISAFEQPRFTFDMDKKHFLRVEIKPTLFPNPRQKTAVFKERYNIIHQRLLRNPAFQ 270
Score = 44.3 bits (103), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 40/194 (20%), Positives = 80/194 (41%), Gaps = 34/194 (17%)
Query: 467 TNPCRVQY--CSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKI 524
+NP R+ + + E++++R+++ + RN I++ G +K +++P
Sbjct: 596 SNPTRLSFFGPAHELVILRDDISGRFRRNAIRY---GQATKQAESQTDSA----IVLPD- 647
Query: 525 YVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRN 584
+ +S ALP + E + R+ + + E + N
Sbjct: 648 ----SDEDMTMSGALPTTESDELED-----------TRMAFDADSPPAALAETVPSESYN 692
Query: 585 CIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWS-QYGALSLYPLPDLVILGD-QLN 642
+ +K + +L+ Q T+ PL + PV+W AL+LYPLP +++ D
Sbjct: 693 IQE-------AKRLILSLLPQSTVSPFPLTVRPVHWDYAPSALTLYPLPHALVVADADAP 745
Query: 643 AYTIQNTDCIFINP 656
+ I C +NP
Sbjct: 746 PFAITYEGCHVMNP 759
>gi|358378825|gb|EHK16506.1| hypothetical protein TRIVIDRAFT_56933 [Trichoderma virens Gv29-8]
Length = 778
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 52/189 (27%), Positives = 89/189 (47%), Gaps = 21/189 (11%)
Query: 207 VIPVSNREQNNIMNWLKLSSECCRTEINSEEQIF-SVISAFDIPQFDYDPDLKKFKLVDK 265
+P + + M+ L + E E S+ + + VI A+D P+ Y+ D K F+
Sbjct: 175 TLPRQDSNASFGMSGLGVQEEADDDEEASDARAWLKVIDAYDQPRLLYNVDKKHFERDTA 234
Query: 266 KRKLCADSDAKSKLFRERYNIIRQRTLR--------------HSLFNNINPNADSVKLDW 311
K L + K+ +FR RY++I QR LR H+L +++ N S+K+
Sbjct: 235 KPSLLPPASHKTIVFRNRYHVIHQRLLRNESFQTSSVTSSRKHTLQRSLS-NQQSLKITP 293
Query: 312 VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIV 368
+ L+ NH ++LG ++ L + D TG + LDLSQ P + +V
Sbjct: 294 IANLLGRHGSNH--MLLGQLNILPTGDLAISDLTGTIALDLSQAVAIPEDSAWFCPGMMV 351
Query: 369 LVEGHYKDQ 377
LV+G Y+++
Sbjct: 352 LVDGVYEEE 360
Score = 45.8 bits (107), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 17/124 (13%)
Query: 26 EINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRT 85
E + VI A+D P+ Y+ D K F+ K L + K+ +FR RY++I QR
Sbjct: 201 EASDARAWLKVIDAYDQPRLLYNVDKKHFERDTAKPSLLPPASHKTIVFRNRYHVIHQRL 260
Query: 86 LRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITT-SGLLGKHQSP 144
LR+ F S+T+ T+ + +Q IT + LLG+H S
Sbjct: 261 LRNESFQT----------------SSVTSSRKHTLQRSLSNQQSLKITPIANLLGRHGSN 304
Query: 145 HLNL 148
H+ L
Sbjct: 305 HMLL 308
>gi|429851931|gb|ELA27088.1| DNA polymerase epsilon subunit [Colletotrichum gloeosporioides Nara
gc5]
Length = 796
Score = 63.2 bits (152), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 73/161 (45%), Gaps = 18/161 (11%)
Query: 233 INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTL 292
+ + VI A++ P+F Y+ K F+ K L + K+ LFR RYN+I QR L
Sbjct: 217 VKDARKWLKVIDAYEQPRFSYNVAKKHFERETSKPSLLPSASHKTALFRNRYNVIHQRLL 276
Query: 293 RHSLFNNIN-------------PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRY 339
R+ F N + K+ + ++ +H ++LGM++ L
Sbjct: 277 RNESFQTSAVASARTPSLKRSLSNQQNHKITPIANMLGRHGSHH--MLLGMLNVLPAGGL 334
Query: 340 FLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
+ D T + LDLSQ P +T IVLV+G Y+++
Sbjct: 335 AISDLTATIALDLSQAVAIPEDSAWFTPGMIVLVDGVYEEE 375
Score = 47.8 bits (112), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 57/129 (44%), Gaps = 23/129 (17%)
Query: 27 INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTL 86
+ + VI A++ P+F Y+ K F+ K L + K+ LFR RYN+I QR L
Sbjct: 217 VKDARKWLKVIDAYEQPRFSYNVAKKHFERETSKPSLLPSASHKTALFRNRYNVIHQRLL 276
Query: 87 RHSLFNN---INPNADSVKLDWVEYLMSLTN-VNHKTVVLGMISQLKENITTSGLLGKHQ 142
R+ F + S+K SL+N NHK + + +LG+H
Sbjct: 277 RNESFQTSAVASARTPSLK-------RSLSNQQNHKITPI------------ANMLGRHG 317
Query: 143 SPHLNLLCL 151
S H+ L L
Sbjct: 318 SHHMLLGML 326
>gi|452981196|gb|EME80956.1| hypothetical protein MYCFIDRAFT_28309 [Pseudocercospora fijiensis
CIRAD86]
Length = 788
Score = 62.8 bits (151), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 29/157 (18%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
+ISAF+ P+F Y D K F ++ K L ++ K+ L +ERYNII QR LR+ F +
Sbjct: 208 IISAFEQPRFTYSVDKKHFLRLENKPALFPNTKQKTALIKERYNIIHQRLLRNPAFQAPS 267
Query: 302 PNADSV--------------KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGI 347
+A + K+ + L+ NH ++LGM+ L D +G
Sbjct: 268 FSAQTASLRRSNTVTERTFYKITPIANLLGRGGTNH--LLLGMLVIAPTGTLALNDLSGS 325
Query: 348 VQLDLS--------QTSYHPGLYTENCIVLVEGHYKD 376
+ LDL Q + PG+ IVLV+G Y++
Sbjct: 326 ISLDLQHATSMQEVQPYFCPGM-----IVLVDGVYEE 357
Score = 52.4 bits (124), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
+ISAF+ P+F Y D K F ++ K L ++ K+ L +ERYNII QR LR+ F +
Sbjct: 208 IISAFEQPRFTYSVDKKHFLRLENKPALFPNTKQKTALIKERYNIIHQRLLRNPAFQAPS 267
Query: 96 PNADSVKL 103
+A + L
Sbjct: 268 FSAQTASL 275
Score = 47.4 bits (111), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 84/197 (42%), Gaps = 38/197 (19%)
Query: 467 TNPCRVQY--CSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKI 524
+NP R+ + E++V R+++ ++M RN I+ + I + S+ + D+ P+
Sbjct: 590 SNPARLSLFGAAHEVVVFRDDISARMRRNAIRHGQA--IRQQESQPDSGIDVS---TPEA 644
Query: 525 YVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQ---YCSQEILVVREELLSKM 581
+ T++ + S ++ +P T P V Y +QE
Sbjct: 645 GEDFTMSGALPSTENDTQEDTQMTDAIPFEDPPT-PLEVSTESYATQE------------ 691
Query: 582 CRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWS-QYGALSLYPLPDLVILGD- 639
+K + +L+ Q TL PL + PV+W ALSLYPLP +I+ D
Sbjct: 692 -------------AKRLILSLLPQSTLSPFPLTVRPVHWEYALSALSLYPLPHTLIVADA 738
Query: 640 QLNAYTIQNTDCIFINP 656
+ A+ + C INP
Sbjct: 739 EAPAFALTYEGCHVINP 755
>gi|380482609|emb|CCF41133.1| DNA polymerase alpha/epsilon subunit B [Colletotrichum
higginsianum]
Length = 653
Score = 62.8 bits (151), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/182 (26%), Positives = 85/182 (46%), Gaps = 18/182 (9%)
Query: 212 NREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA 271
+ +Q+ M+ L + E + + ++I A+D P+F Y+ K F+ K L
Sbjct: 47 DSQQSFGMSSLGVEEEDDEDNVRDPRKWLNIIDAYDQPRFSYNVAKKHFERETSKPSLLP 106
Query: 272 DSDAKSKLFRERYNIIRQRTLRHSLFNN---INPNADSV----------KLDWVEYLMSL 318
+ K+ LFR RYN+I QR LR+ F + A S+ K+ + L+
Sbjct: 107 PAAHKTALFRNRYNVIHQRLLRNESFQTSAVASARAPSLKRSASNQLNHKITPIANLLGR 166
Query: 319 TNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYK 375
+H ++LGM++ L + D + + LD+SQ P ++ IVLV+G Y+
Sbjct: 167 HGSHH--MLLGMLNILPAGGLAISDLSATIALDVSQAVAIPEDSAWFSPGMIVLVDGVYE 224
Query: 376 DQ 377
++
Sbjct: 225 EE 226
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 54/119 (45%), Gaps = 17/119 (14%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
++I A+D P+F Y+ K F+ K L + K+ LFR RYN+I QR LR+ F
Sbjct: 75 LNIIDAYDQPRFSYNVAKKHFERETSKPSLLPPAAHKTALFRNRYNVIHQRLLRNESFQT 134
Query: 94 INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITT-SGLLGKHQSPHLNLLCL 151
++ + ++ +QL IT + LLG+H S H+ L L
Sbjct: 135 ----------------SAVASARAPSLKRSASNQLNHKITPIANLLGRHGSHHMLLGML 177
Score = 39.7 bits (91), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 36/69 (52%), Gaps = 1/69 (1%)
Query: 589 PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQ 647
P++ ++ V+T++ QG L ++ PV+W AL LYPLP ++L D + +
Sbjct: 555 PQDVHTARKLVKTVLDQGYLSPFRQSIRPVHWDYATALHLYPLPTSMVLVDTTAPPFCVT 614
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 615 YEGCHVMNP 623
>gi|240279915|gb|EER43420.1| DNA polymerase epsilon subunit B [Ajellomyces capsulatus H143]
Length = 644
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+ +N + +ISAF+ + Y+ + K F ++ L ++ + R+RYNII QR
Sbjct: 55 SSLNDTRRWIKIISAFEQHRPVYNINKKNFDIITSPPSLFPPPYQRANILRDRYNIIYQR 114
Query: 291 TLRHSLF-------NNINPNAD-SVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLE 342
LR+ F + +P+ S KL + L+ T +H ++LG++S L
Sbjct: 115 ILRNEAFRIPLQGSTSSHPSTTRSYKLTSIANLLGRTGTSH--LLLGLLSMSPAGDLSLT 172
Query: 343 DPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
DPTG + LD++ P + IVLV+G Y+++
Sbjct: 173 DPTGSIALDITHARAIPEDGAWFAPGMIVLVDGIYREE 210
Score = 41.6 bits (96), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ-LNAYTIQNTDCIF 653
S+ V+T++ Q L P ++ PV W L LYPLP +IL D + + C
Sbjct: 551 SRKLVKTILDQSHLSPFPQHIRPVLWDYAPVLHLYPLPTAMILADSGAEPFAVTYEGCHV 610
Query: 654 INP 656
+NP
Sbjct: 611 MNP 613
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 25 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 84
+ +N + +ISAF+ + Y+ + K F ++ L ++ + R+RYNII QR
Sbjct: 55 SSLNDTRRWIKIISAFEQHRPVYNINKKNFDIITSPPSLFPPPYQRANILRDRYNIIYQR 114
Query: 85 TLRHSLF-------NNINPNAD-SVKLDWVEYLMSLTNVNHKTVVLGMIS 126
LR+ F + +P+ S KL + L+ T +H ++LG++S
Sbjct: 115 ILRNEAFRIPLQGSTSSHPSTTRSYKLTSIANLLGRTGTSH--LLLGLLS 162
>gi|325093046|gb|EGC46356.1| DNA polymerase epsilon subunit B [Ajellomyces capsulatus H88]
Length = 747
Score = 61.6 bits (148), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 77/158 (48%), Gaps = 13/158 (8%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+ +N + +ISAF+ + Y+ + K F ++ L ++ + R+RYNII QR
Sbjct: 158 SSLNDTRRWIKIISAFEQHRPVYNINKKNFDIITSPPSLFPPPYQRANILRDRYNIIYQR 217
Query: 291 TLRHSLF-------NNINPNAD-SVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLE 342
LR+ F + +P+ S KL + L+ T +H ++LG++S L
Sbjct: 218 ILRNEAFRIPLQGSTSSHPSTTRSYKLTSIANLLGRTGTSH--LLLGLLSMSPAGDLSLT 275
Query: 343 DPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
DPTG + LD++ P + IVLV+G Y+++
Sbjct: 276 DPTGSIALDITHARAIPEDGAWFAPGMIVLVDGIYREE 313
Score = 42.0 bits (97), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ-LNAYTIQNTDCIF 653
S+ V+T++ Q L P ++ PV W L LYPLP +IL D + + C
Sbjct: 654 SRKLVKTILDQSHLSPFPQHIRPVLWDYAPVLHLYPLPTAMILADSGAEPFAVTYEGCHV 713
Query: 654 INP 656
+NP
Sbjct: 714 MNP 716
Score = 40.4 bits (93), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 55/110 (50%), Gaps = 10/110 (9%)
Query: 25 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 84
+ +N + +ISAF+ + Y+ + K F ++ L ++ + R+RYNII QR
Sbjct: 158 SSLNDTRRWIKIISAFEQHRPVYNINKKNFDIITSPPSLFPPPYQRANILRDRYNIIYQR 217
Query: 85 TLRHSLF-------NNINPNAD-SVKLDWVEYLMSLTNVNHKTVVLGMIS 126
LR+ F + +P+ S KL + L+ T +H ++LG++S
Sbjct: 218 ILRNEAFRIPLQGSTSSHPSTTRSYKLTSIANLLGRTGTSH--LLLGLLS 265
>gi|118363234|ref|XP_001014793.1| hypothetical protein TTHERM_00048980 [Tetrahymena thermophila]
gi|89296609|gb|EAR94597.1| hypothetical protein TTHERM_00048980 [Tetrahymena thermophila
SB210]
Length = 637
Score = 61.2 bits (147), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 79/354 (22%), Positives = 145/354 (40%), Gaps = 51/354 (14%)
Query: 328 LGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQI---LHVDAL 384
LGMI + Y+++D V+++L Q G T IV+ +G + DQ+ + L
Sbjct: 237 LGMIYEGVPGDYYMQDEFSRVKINLEQAQVELGYVTVTSIVIAKGVF-DQMQGAFVISKL 295
Query: 385 GFP---------PPEASKNSRLYFGN----QNIWGGPSPVSLKSVN---------RMTKM 422
P P K S +FG Q I G + ++S + +T+
Sbjct: 296 MLPEFEEEVNLNPSVFKKESSDFFGAKAKVQRILGKLIQLEIESASLGKQGSRAQNLTRF 355
Query: 423 EKNNENAMIVILSDVHLD---NDKVRNNLC-----EFITSE------FQGFVPNSTMATN 468
+K + M + D+ L+ +N C +F+ S+ F+G +
Sbjct: 356 QKERQLEMGIF--DLDLNPYFQVSEKNEYCVCVFSDFLISDRNTLKKFEGILQVYESQLK 413
Query: 469 PCRVQYCSQ--EILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIF-LIVPKIY 525
P + + + E ++ + I D ++K +D + ++VP I
Sbjct: 414 PLVIILMGAFFNVSEINSEFVNDQVKEAI-----NDFLNLLNKFKSLRDNCYWIMVPHIN 468
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNC 585
G + + S LP+ + +E + +P + NPCR+ + L+ R +L+ + +
Sbjct: 469 DIGGMPVQPKS-ELPEHLFTEIKSIIPFFKLVQNPCRLSILGKTFLIQRNDLIKDLRKRQ 527
Query: 586 IKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
I DI ++ +T++SQ L LPL + P+ W+ L Y PD +IL D
Sbjct: 528 IVINHHKDIQLNYAQTILSQRHLSPLPLIIKPIIWNYDNTLLFYDNPDYLILAD 581
>gi|323447743|gb|EGB03654.1| hypothetical protein AURANDRAFT_72694 [Aureococcus anophagefferens]
Length = 673
Score = 60.8 bits (146), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 132/330 (40%), Gaps = 57/330 (17%)
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHYK--DQILHVDALGFPPPEASKNSRLYFGNQNI 404
+V+LD+S+ G + E +++ EG ++ VDALG PP E + G +++
Sbjct: 334 VVKLDISRAETFGGFFAEGMVIIAEGSMGLDGEVFIVDALGHPPFEPRDLAFRAVGGRHL 393
Query: 405 WGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNST 464
V L + M ++ A +++++ HLD+ L +
Sbjct: 394 -----DVFLNNCGVDRDMSRD---APWLVIANCHLDSPAALPRLRSLLVG---------- 435
Query: 465 MATNPCRVQYCS-------QEILVVREELLSKMCRNC----------IKFPEEGDISKHV 507
+A C YC+ + +++ + S+ N +F E G
Sbjct: 436 LALPICE-HYCTTKEKVPKRPVIIFLGDFTSRTSANSGAQSVTSSYRFRFGELGAALCAP 494
Query: 508 SKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPK--FITSEFQGFVPNSTMATN------ 559
+ G++ + LI +++ G SPALP+ + Q V + TN
Sbjct: 495 ELDIGQESMASLI-DLVFIPGPNDPVAGSPALPRGRLLQQAIQPLVDRIKIKTNGTAPIF 553
Query: 560 ---PCRVQYC-SQEILVVREELLSKMCR------NCIKFPEEGDISKHFVRTLVSQGTLV 609
P R ++ +EI+ R++LL K+ + C E D S H +TL+ Q L
Sbjct: 554 TTSPARFRFGHGEEIVFHRDDLLRKLRQLSRHIAGCANHIELVDSSAHLAKTLLDQCHLA 613
Query: 610 SLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
+L P +W+ L LYP P ++ L D
Sbjct: 614 PFAPSLSPKHWNYDHTLRLYPPPSILCLSD 643
>gi|451993337|gb|EMD85811.1| hypothetical protein COCHEDRAFT_1198754 [Cochliobolus
heterostrophus C5]
Length = 781
Score = 60.5 bits (145), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/151 (29%), Positives = 70/151 (46%), Gaps = 16/151 (10%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VI AF+ P+ Y+ + K F+ K L + K++LFR+RY+I+ QR LR+ F
Sbjct: 208 VIGAFEQPKLIYNVNQKHFEKSTAKPSLFPNPSHKTELFRQRYHIVHQRILRNETFQAPT 267
Query: 302 ---------PNADSVKLDWVEYLMSLTNVNHKT----VVLGMISQLKENRYFLEDPTGIV 348
S+ + + + N+ +T ++LGM++ L D TG +
Sbjct: 268 FSTARSATLSRTGSIATSQMNTITPIANLLGRTGSTHLLLGMLTVSATGALSLSDLTGTI 327
Query: 349 QLDLSQTSYHP--GLY-TENCIVLVEGHYKD 376
LD+ P G Y IVLVEG Y++
Sbjct: 328 ALDIEHARPIPEKGAYFAPGMIVLVEGSYEE 358
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/152 (23%), Positives = 62/152 (40%), Gaps = 53/152 (34%)
Query: 558 TNPCRVQY--CSQEILVVREELLSKMCRNCIKF---PEEGD------------------- 593
+NP R+ + E+ ++R++LL ++ RN I+F P + D
Sbjct: 595 SNPSRLTWFGVKGEMAILRDDLLGRLQRNSIRFNKPPPDADDELPFAPSQQARDLENQDS 654
Query: 594 ----------------------------ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGA 625
I++ RT++SQ L PL+ P++W A
Sbjct: 655 MDLDLAHPPPPRPKHQQQQQPDVDLDTQIARALTRTILSQSHLSPYPLSSRPLHWDFAHA 714
Query: 626 LSLYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
+SLYPLP V+L D + + ++ C +NP
Sbjct: 715 MSLYPLPTSVVLADAEAPPFVVKYFGCTVMNP 746
Score = 45.4 bits (106), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 56/119 (47%), Gaps = 14/119 (11%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI AF+ P+ Y+ + K F+ K L + K++LFR+RY+I+ QR LR+ F
Sbjct: 208 VIGAFEQPKLIYNVNQKHFEKSTAKPSLFPNPSHKTELFRQRYHIVHQRILRNETFQ--A 265
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWV 154
P + + + S+ SQ+ + LLG+ S HL LL ++ V
Sbjct: 266 PTFSTARSATLSRTGSIAT-----------SQMNTITPIANLLGRTGSTHL-LLGMLTV 312
>gi|121715206|ref|XP_001275212.1| DNA polymerase epsilon subunit B, putative [Aspergillus clavatus
NRRL 1]
gi|119403369|gb|EAW13786.1| DNA polymerase epsilon subunit B, putative [Aspergillus clavatus
NRRL 1]
Length = 769
Score = 59.7 bits (143), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 47/154 (30%), Positives = 76/154 (49%), Gaps = 20/154 (12%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
V+ AFD+P+ Y+ D K F++ K L + K+ +FR+RYNII QR LR+ F
Sbjct: 200 VVEAFDMPRLTYNVDKKYFEITKSKATLFPQALHKTNVFRDRYNIIHQRLLRNESFQTSS 259
Query: 298 -NNINPN----------ADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
++I P+ + S +L + L+ + +H + L +S + L D TG
Sbjct: 260 NHSIGPSLQRSSSSFAPSQSYRLTPIANLLGRSGTSHLLLGLLALSPAGD--LSLIDLTG 317
Query: 347 IVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
V LDL+ P + IVLV+G Y+++
Sbjct: 318 SVSLDLNHARTIPEDGAWFAPGMIVLVDGIYEEE 351
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/63 (39%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ V+T++ QGT+ PL+L PV W +L LYPLP +IL D + A+ I C
Sbjct: 676 ARKLVKTILDQGTMSPFPLSLRPVLWDYAASLQLYPLPTALILADSEAAAFCITYEGCHV 735
Query: 654 INP 656
+NP
Sbjct: 736 MNP 738
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF 91
V+ AFD+P+ Y+ D K F++ K L + K+ +FR+RYNII QR LR+ F
Sbjct: 200 VVEAFDMPRLTYNVDKKYFEITKSKATLFPQALHKTNVFRDRYNIIHQRLLRNESF 255
>gi|315056979|ref|XP_003177864.1| DNA polymerase epsilon subunit B [Arthroderma gypseum CBS 118893]
gi|311339710|gb|EFQ98912.1| DNA polymerase epsilon subunit B [Arthroderma gypseum CBS 118893]
Length = 740
Score = 59.7 bits (143), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 45/251 (17%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
V++AF+ + Y+P+ K F+ + L + + LFR+RY + QR LR+ F
Sbjct: 191 VVNAFEQQRLTYNPNKKHFEPPYESASLLPPARNRVSLFRDRYYRVHQRLLRNETFQTST 250
Query: 298 --------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
N + K+ + L + NH ++LG+++ Y L DP+G V
Sbjct: 251 LPTSFSESNAATSSNQPYKITSITSLQGRGHTNH--LLLGLLTISPSGGYNLSDPSGTVA 308
Query: 350 LDLSQTSYHP---GLYTENCIVLVEGHYKDQILHVDALGF-------------PPPEASK 393
+D+ P + I+LV+G Y+D+ A G PP +
Sbjct: 309 IDMEHAKGIPANGAWFVPGMILLVDGVYEDEDEDTVARGAGAIGGKFIAVSVGGPPCERR 368
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNN---------------ENAMIVILSDVH 438
L NQ+ P + S + M+ + +N E +VI+ +V+
Sbjct: 369 EVSLGVDNQSRGWNTLPPTDSSADPMSAVGDSNQPEFMHPGSISRQSSEAQRVVIMGEVN 428
Query: 439 LDNDKVRNNLC 449
LDN K L
Sbjct: 429 LDNPKTLQALS 439
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ V++++ QG L + P+ W AL LYPLP +++ D + + +T+ C
Sbjct: 647 ARRLVKSILDQGYLSPFSPAVRPILWDYASALHLYPLPTALVMADPEADPFTVTYEGCHA 706
Query: 654 INP 656
+NP
Sbjct: 707 MNP 709
>gi|302662329|ref|XP_003022821.1| DNA polymerase epsilon subunit B, putative [Trichophyton verrucosum
HKI 0517]
gi|291186786|gb|EFE42203.1| DNA polymerase epsilon subunit B, putative [Trichophyton verrucosum
HKI 0517]
Length = 788
Score = 59.3 bits (142), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 107/525 (20%), Positives = 191/525 (36%), Gaps = 116/525 (22%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
VISAF+ + Y+ + K F+ + L ++ + LFR+RY I +R LR+ F
Sbjct: 239 VISAFEQQRLTYNMNKKHFESPHEPASLLPPANNRVSLFRDRYYRIHERLLRNETFQTST 298
Query: 298 --------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
N + K+ + L + H + L IS Y L DP+G V
Sbjct: 299 LPTSFGESNTAATSNQPYKITSITSLQGRGSTTHLLLGLLTIS--PSGGYNLSDPSGTVA 356
Query: 350 LDLSQTSYHP---GLYTENCIVLVEGHYKDQILHVDALGF-------------PPPEASK 393
+DL P + I+LV+G Y+D++ A G PP +
Sbjct: 357 IDLDHAKGIPANGAWFVPGMILLVDGIYEDEVEDTVARGAGAIGGKFIAISVGGPPCERR 416
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNE---------------NAMIVILSDVH 438
L +Q+ +P + S + M+ N+ +VI+ +V+
Sbjct: 417 EVSLGIDSQSRGWNIAPTTDPSADPMSAGGDTNQPEFRHPSSISRLSSDAQRVVIMGEVN 476
Query: 439 LDNDKVRNNLCEFIT-----SEFQG---------FVPNSTMATNPC-RVQYCS-----QE 478
LDN K L ++ S+ G FV ++ + C ++Y
Sbjct: 477 LDNPKTLQALSIVLSQYDLASDDTGPPAFVLIGNFVHDAAIGAGNCGSIEYKEFFDSLAS 536
Query: 479 ILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPA 538
+L LL K + P E D I +VP+++ + +V A
Sbjct: 537 VLTQFPNLLRKST--FVFVPGENDPWASSFSPGATACIPRPLVPELFR--SRVRRVFQAA 592
Query: 539 LPKFITSEFQGFVPNSTMATNPCRV---QYCSQEILVVREELLSKMCRNCIKF------- 588
+ + + ++ +NP R+ + E+++ R+++ ++ RN +
Sbjct: 593 SSQDHPTPSRQIDESAVWTSNPTRLTVDEPSVSEMVIFRDDISGRLRRNAVILKDDKAKK 652
Query: 589 -------------------PEEGDIS-----------------KHFVRTLVSQGTLVSLP 612
PE+ + S + V++++ QG L
Sbjct: 653 PSPDQDDAGFLSQATTVTDPEDSNTSGSNKGHQGGVDPSLVAARRLVKSILDQGYLSPFA 712
Query: 613 LNLCPVYWSQYGALSLYPLP-DLVILGDQLNAYTIQNTDCIFINP 656
+ P+ W AL LYPLP LVI + + +T+ C +NP
Sbjct: 713 PAVRPILWDYASALHLYPLPTSLVIADPEADPFTVTYEGCHAMNP 757
>gi|302421638|ref|XP_003008649.1| DNA polymerase epsilon subunit B [Verticillium albo-atrum VaMs.102]
gi|261351795|gb|EEY14223.1| DNA polymerase epsilon subunit B [Verticillium albo-atrum VaMs.102]
Length = 811
Score = 59.3 bits (142), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 70/155 (45%), Gaps = 20/155 (12%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
VI A+D P+ Y+ K F+ K L + K+ LFR RY++I QR LR+ F
Sbjct: 223 LKVIGAYDQPRLCYNVAKKHFERETTKPSLLPPASHKTALFRNRYHVIHQRLLRNEAFQT 282
Query: 300 INPNADSVKLDWVEYLMSLTNVNHKT--------------VVLGMISQLKENRYFLEDPT 345
S + ++ +S T NHK ++LGM+ L + D T
Sbjct: 283 S--AVASARASTLKRSLS-TQQNHKITPIANLLGRHGSHHMLLGMLVVLPTGGLAISDLT 339
Query: 346 GIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
G + LDLSQ P + IVL++G Y+++
Sbjct: 340 GTIALDLSQAIAIPEDSAWFAPGMIVLMDGVYEEE 374
Score = 47.8 bits (112), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 36/119 (30%), Positives = 54/119 (45%), Gaps = 15/119 (12%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
VI A+D P+ Y+ K F+ K L + K+ LFR RY++I QR LR+ F
Sbjct: 223 LKVIGAYDQPRLCYNVAKKHFERETTKPSLLPPASHKTALFRNRYHVIHQRLLRNEAFQT 282
Query: 94 INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLI 152
S + ++ +S T NHK + + LLG+H S H+ L L+
Sbjct: 283 S--AVASARASTLKRSLS-TQQNHKITPI------------ANLLGRHGSHHMLLGMLV 326
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIF 653
++ V+T++ QG L + PV+W AL LYPLP ++L D + + C
Sbjct: 719 ARKLVKTILDQGYLAPFRHAIRPVHWDYAAALHLYPLPTALVLVDATAPPFAVTYEGCHV 778
Query: 654 INPV 657
+NP
Sbjct: 779 MNPA 782
>gi|302912714|ref|XP_003050760.1| hypothetical protein NECHADRAFT_93537 [Nectria haematococca mpVI
77-13-4]
gi|256731698|gb|EEU45047.1| hypothetical protein NECHADRAFT_93537 [Nectria haematococca mpVI
77-13-4]
Length = 771
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 50/193 (25%), Positives = 83/193 (43%), Gaps = 19/193 (9%)
Query: 202 LILHPVIPVSNREQNNI-MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKF 260
L L P P+++ + M+ L + E +I+A++ P+ Y+ K F
Sbjct: 169 LGLRPAEPMTDDANKSFGMSGLGVEEEPEEENTKDPRAWLKIINAYEQPRLIYNVSKKHF 228
Query: 261 KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN-------------PNADSV 307
+ L + K+ +FR RYN+I QR LR+ F N S+
Sbjct: 229 ERDTSSPSLLPAASHKTTVFRNRYNVIHQRLLRNESFQTSAVSSSRKRTLQRSLSNQQSL 288
Query: 308 KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTE 364
KL + L+ +H ++LG++ L + D TG + LDLSQ P +
Sbjct: 289 KLTPIANLLGRHGSSH--MLLGLLVILPTGDLAISDLTGTIALDLSQAVAIPEDSAWFCP 346
Query: 365 NCIVLVEGHYKDQ 377
IVLV+G Y+++
Sbjct: 347 GMIVLVDGVYEEE 359
Score = 42.0 bits (97), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 30/120 (25%), Positives = 55/120 (45%), Gaps = 17/120 (14%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
+I+A++ P+ Y+ K F+ L + K+ +FR RYN+I QR LR+ F
Sbjct: 208 LKIINAYEQPRLIYNVSKKHFERDTSSPSLLPAASHKTTVFRNRYNVIHQRLLRNESFQT 267
Query: 94 INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITT-SGLLGKHQSPHLNLLCLI 152
++++ +T+ + +Q +T + LLG+H S H+ L L+
Sbjct: 268 ----------------SAVSSSRKRTLQRSLSNQQSLKLTPIANLLGRHGSSHMLLGLLV 311
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 589 PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD-LVILGDQLNAYTIQ 647
P + ++ V+TL+ QG L + PV+W AL LYPLP +V+L + +
Sbjct: 681 PHDVHAAQKLVKTLLDQGYLAPFRQTIRPVHWDYASALHLYPLPTAMVLLDTTAPPFCVT 740
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 741 YEGCHVMNP 749
>gi|225563089|gb|EEH11368.1| DNA polymerase epsilon subunit B [Ajellomyces capsulatus G186AR]
Length = 748
Score = 58.9 bits (141), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/158 (27%), Positives = 75/158 (47%), Gaps = 13/158 (8%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+ +N + +ISAF+ + Y+ + K F ++ L ++ + R+RYNII QR
Sbjct: 158 SSLNDTRRWIKIISAFEQHRPVYNINKKNFDIITSPPSLFPPPYQRANILRDRYNIIYQR 217
Query: 291 TLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLE 342
LR+ F + + S KL + L+ T +H ++LG++S L
Sbjct: 218 ILRNEAFRIPLQGSTSSHSSTTRSYKLTSIANLLGRTGTSH--LLLGLLSMSPAGDLSLT 275
Query: 343 DPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
DPTG + LD++ P + IVLV+G Y+++
Sbjct: 276 DPTGSIALDITHARAIPEDGAWFAPGMIVLVDGIYREE 313
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ-LNAYTIQNTDCIF 653
S+ V+T++ Q L P ++ PV W L LYPLP +IL D + + C
Sbjct: 655 SRKLVKTILDQSHLSPFPQHIRPVLWDYAPVLHLYPLPTAMILADSGAEPFAVTYEGCHV 714
Query: 654 INP 656
+NP
Sbjct: 715 MNP 717
>gi|326474737|gb|EGD98746.1| hypothetical protein TESG_06023 [Trichophyton tonsurans CBS 112818]
gi|326484866|gb|EGE08876.1| DNA polymerase epsilon subunit B [Trichophyton equinum CBS 127.97]
Length = 740
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 111/543 (20%), Positives = 196/543 (36%), Gaps = 152/543 (27%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
VISAF+ + Y+ + K F+ + L ++ + LFR+RY I +R LR+ F
Sbjct: 191 VISAFEQQRLTYNMNKKHFESPHEPASLLPPANNRVSLFRDRYYRIHERLLRNETFQTST 250
Query: 298 --------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
N + K+ + L + H + L IS Y L DP+G V
Sbjct: 251 LPTSFSESNTATTSNQPYKITSITSLQGRGSTTHLLLGLLTIS--PSGGYNLSDPSGTVA 308
Query: 350 LDLSQTSYHP---GLYTENCIVLVEGHYKDQ-----ILHVDALGFP--------PPEASK 393
+DL P + I+LV+G Y+D+ A+G PP +
Sbjct: 309 IDLDHAKGIPANGAWFVPGMILLVDGIYEDEDEDTVTRGAGAIGGKFIAISVGGPPCERR 368
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNN---------------ENAMIVILSDVH 438
L +Q+ +P + S + M+ +N E +VI+ +V+
Sbjct: 369 EVSLGIDSQSRGWNIAPPTDPSADPMSAGGASNQPEYRHPSSTSRQPSEAQRVVIMGEVN 428
Query: 439 LDNDKVRNNLC------EFITSEFQ--------GFVPNSTMATNPC-RVQYCSQEILVVR 483
LDN K L + + + Q FV ++ + C ++Y
Sbjct: 429 LDNPKTLQALSIVLNQYDAASDDTQPPAFVLIGNFVHDAAIGAGNCGSIEY--------- 479
Query: 484 EELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVP-------KIYVEGTVTSKVLS 536
+E + +FP N + F+ VP + G T+ +
Sbjct: 480 KEFFDSLASVLTQFP------------NLLRTSTFVFVPGENDPWASSFSPG-ATACIPR 526
Query: 537 PALPKFITSE----FQGF------VP------NSTMATNPCRV---QYCSQEILVVREEL 577
P +P+ S FQ +P ++ +NP R+ + E+++ R+++
Sbjct: 527 PLVPELFRSRVRRVFQTASSQDHPIPSRQVDESAVWTSNPTRLTVDEPSVSEMVIFRDDI 586
Query: 578 LSKMCRNCI---------KFPEEGD----------------------------------I 594
S++ RN + P++GD
Sbjct: 587 SSRLRRNAVILKDDRAKKPSPDQGDAGFLSQATTVTDPEDSNTTGSSKDHQDGIDPSLVA 646
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP-DLVILGDQLNAYTIQNTDCIF 653
++ V++++ QG L + P+ W AL LYPLP LVI + + +T+ C
Sbjct: 647 ARRLVKSILDQGYLSPFAPAVRPILWDYASALHLYPLPTSLVIADPEADPFTVTYEGCHA 706
Query: 654 INP 656
+NP
Sbjct: 707 MNP 709
>gi|346974837|gb|EGY18289.1| DNA polymerase epsilon subunit B [Verticillium dahliae VdLs.17]
Length = 807
Score = 58.5 bits (140), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/154 (28%), Positives = 69/154 (44%), Gaps = 18/154 (11%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
VI A+D P+ Y+ K F+ K L + K+ LFR RY++I QR LR+ F
Sbjct: 223 LKVIGAYDQPRLCYNVAKKHFERETTKPSLLPPASHKTALFRNRYHVIHQRLLRNEAFQT 282
Query: 300 IN-------------PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
N + K+ + L+ +H ++LGM+ L + D TG
Sbjct: 283 SAVASARASTLKRSLSNQQNHKITPIANLLGRHGSHH--MLLGMLVVLPTGGLAISDLTG 340
Query: 347 IVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
+ LDLSQ P + IVL++G Y+++
Sbjct: 341 TIALDLSQAIAIPEDSAWFAPGMIVLMDGVYEEE 374
Score = 47.0 bits (110), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 34/120 (28%), Positives = 53/120 (44%), Gaps = 17/120 (14%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
VI A+D P+ Y+ K F+ K L + K+ LFR RY++I QR LR+ F
Sbjct: 223 LKVIGAYDQPRLCYNVAKKHFERETTKPSLLPPASHKTALFRNRYHVIHQRLLRNEAFQT 282
Query: 94 INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITT-SGLLGKHQSPHLNLLCLI 152
++ + T+ + +Q IT + LLG+H S H+ L L+
Sbjct: 283 ----------------SAVASARASTLKRSLSNQQNHKITPIANLLGRHGSHHMLLGMLV 326
Score = 41.6 bits (96), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIF 653
++ V+T++ QG L + PV+W AL LYPLP ++L D + + C
Sbjct: 715 ARKLVKTILDQGYLAPFRHAIRPVHWDYAAALHLYPLPTALVLVDATAPPFAVTYEGCHV 774
Query: 654 INPV 657
+NP
Sbjct: 775 MNPA 778
>gi|154281431|ref|XP_001541528.1| predicted protein [Ajellomyces capsulatus NAm1]
gi|150411707|gb|EDN07095.1| predicted protein [Ajellomyces capsulatus NAm1]
Length = 748
Score = 58.2 bits (139), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/158 (26%), Positives = 74/158 (46%), Gaps = 13/158 (8%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+ +N + +ISAF+ + Y+ + K F ++ L ++ + R+RYNII QR
Sbjct: 158 SSLNDTRRWIKIISAFEQHRPVYNINKKNFDIITSPPSLFPPPYQRANILRDRYNIIYQR 217
Query: 291 TLRHSLFN--------NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLE 342
LR+ F + + KL + L+ T +H ++LG++S L
Sbjct: 218 ILRNEAFRIPLQGSTSSHSSTTRYYKLTSIANLLGRTGTSH--LLLGLLSMSPAGDLSLT 275
Query: 343 DPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
DPTG + LD++ P + IVLV+G Y+++
Sbjct: 276 DPTGSIALDITHARAIPEDGAWFAPGMIVLVDGIYREE 313
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ-LNAYTIQNTDCIF 653
S+ V+T++ Q L P ++ PV W L LYPLP +IL D + + C
Sbjct: 655 SRKLVKTILDQSHLSPFPQHIRPVLWDYAPVLHLYPLPTAMILADSGAEPFAVTYEGCHV 714
Query: 654 INP 656
+NP
Sbjct: 715 MNP 717
>gi|407928266|gb|EKG21128.1| DNA polymerase alpha/epsilon subunit B [Macrophomina phaseolina
MS6]
Length = 791
Score = 57.8 bits (138), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 92/433 (21%), Positives = 168/433 (38%), Gaps = 92/433 (21%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 301
VI FD P+ Y+ K F K+ L + K+++FR+RY+II QR LR+ F
Sbjct: 204 VIGGFDQPKMVYNVTKKHFDRSTAKQTLFPNPSLKTEMFRQRYHIIHQRLLRNEAFQTPT 263
Query: 302 PNADSVKLDWVEYLMSLTNVNHKT-------------VVLGMISQLKENRYFLEDPTGIV 348
+ L MS++ +N T ++LG+++ L D TG +
Sbjct: 264 FAGNRSSLQ-RSASMSISQINKITPISNLLGRHGSNHLLLGLLTVSPTGTLALSDLTGSI 322
Query: 349 QLDLSQTSYHP---GLYTENCIVLVEGHYKDQILHVD----------------------- 382
LD++ P ++ IVLV+G Y++ +
Sbjct: 323 ALDVTHARPIPEDGAWFSPGMIVLVDGTYEEDYGNPHSGSASSLGATGGIGGTIGGKFIS 382
Query: 383 -ALGFPPPE------ASKNSRL-----------YFGNQNIWGGPSPVSLKSVNRMTKMEK 424
++G PPPE + +S FG + G S + + RM ++E
Sbjct: 383 FSIGHPPPEKRSLTLGTPDSSTVTDPNGGVVGPAFGWTDFLGTGSERATGA--RMRRIEN 440
Query: 425 NNENA--------MIVILSDVHLDNDKVRNNLCEFITS-------EF-------QGFVPN 462
NA I I +D++LDN + L +++ EF FV +
Sbjct: 441 RLLNADSPAHRQTKIAIAADINLDNPQSFTALRTLLSTYSALPIPEFPLAIVLMGNFVTS 500
Query: 463 STMATNPCR--VQYCSQ--EILVVREELLSKMCRNCIKF-PEEGDISKHVSKNNGEKDII 517
+TMA P + ++Y + V + + R + F P + D +
Sbjct: 501 ATMAGVPGQGSIEYKEHFNALASVLADFPQLIARTTLVFVPGDNDAWPSAFSAGAAVPLP 560
Query: 518 FLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQY--CSQEILVVRE 575
VP+I+ + +V+ A + + + + TNP R+ + E+++ R+
Sbjct: 561 RKAVPEIFT--SRIKRVIQEAN-REVGGAGKRKEGEAIWTTNPSRLTWFGVQGEMVLFRD 617
Query: 576 ELLSKMCRNCIKF 588
++ ++ R+ I+F
Sbjct: 618 DVTGRLRRSAIRF 630
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 15/119 (12%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI FD P+ Y+ K F K+ L + K+++FR+RY+II QR LR+ F
Sbjct: 204 VIGGFDQPKMVYNVTKKHFDRSTAKQTLFPNPSLKTEMFRQRYHIIHQRLLRNEAFQTPT 263
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQSPHLNLLCLIWV 154
+ L MS++ +N T + S LLG+H S HL LL L+ V
Sbjct: 264 FAGNRSSLQ-RSASMSISQINKITPI-------------SNLLGRHGSNHL-LLGLLTV 307
Score = 46.2 bits (108), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ-LNAYTIQNTDCIF 653
++ RTL+ Q L PL++ PV+W + LYPLP +++ D+ A+ ++ C
Sbjct: 699 ARALTRTLLDQSHLSPFPLHVRPVHWDYAHVMGLYPLPTALVVADKDAPAFALKYQGCAV 758
Query: 654 INP 656
+NP
Sbjct: 759 MNP 761
>gi|149235209|ref|XP_001523483.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452892|gb|EDK47148.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 674
Score = 57.4 bits (137), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 65/136 (47%), Gaps = 34/136 (25%)
Query: 553 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK---------------- 596
N +A NPCR+ Y SQEI+V +++L+SK RN I FP++ ++ K
Sbjct: 509 NLILAWNPCRINYLSQEIVVFKDQLMSKFKRNDIVFPQDLELEKDPLEGLNDKERIDQLI 568
Query: 597 ---------------HFVRTLVSQGTLVSLPLNLCPVYWSQYG-ALSLYPLPDLVILGD- 639
V+ ++ QGTL+ +L V SQY +L L PLP+++IL D
Sbjct: 569 QRKDEHVSSKIKQARKLVKVILDQGTLLPFEKSL-KVVNSQYDYSLRLEPLPNIIILHDT 627
Query: 640 QLNAYTIQNTDCIFIN 655
+ + + C +N
Sbjct: 628 SFDNFEVTYQGCRVVN 643
Score = 50.1 bits (118), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 39/63 (61%), Gaps = 2/63 (3%)
Query: 445 RNNLCEFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGD 502
R ++ + + +P N +A NPCR+ Y SQEI+V +++L+SK RN I FP++ +
Sbjct: 490 RASIARVFVNRLEKLLPRGNLILAWNPCRINYLSQEIVVFKDQLMSKFKRNDIVFPQDLE 549
Query: 503 ISK 505
+ K
Sbjct: 550 LEK 552
Score = 44.3 bits (103), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 41/158 (25%), Positives = 71/158 (44%), Gaps = 27/158 (17%)
Query: 322 NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQT-SYHPGLYTENCIVLVEGHY------ 374
+ ++ G++S+ + LED T ++L+L+QT Y+ VLVEG Y
Sbjct: 234 GQRFLLFGLLSKDSAGEFILEDSTDYIELNLAQTVKNQSSFYSPGMFVLVEGIYSASGGN 293
Query: 375 ----KDQI---LHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV-SLKSVNR-------- 418
+D I +V + PP E S +G + G + S +R
Sbjct: 294 SSLNQDYIGGCFYVSNIAHPPAERRDKSLEAYGLVDFLGVHRHIASANGGDRAIKIPKPY 353
Query: 419 ---MTKMEKNNENAMIVIL-SDVHLDNDKVRNNLCEFI 452
++++EK+ N IV + SD++ D+ KV N L +F+
Sbjct: 354 KKKLSQLEKSLTNHKIVFMGSDLYFDSPKVINGLTKFL 391
>gi|402584549|gb|EJW78490.1| hypothetical protein WUBG_10601 [Wuchereria bancrofti]
Length = 94
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 36/59 (61%)
Query: 598 FVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
F T+ S G L LPL++ PV W L+LYPLPDLV++ D+ + Q + +F+NP
Sbjct: 2 FCHTIASVGHLSPLPLHISPVIWQMDSYLTLYPLPDLVVIADKFEHFHYQLENTLFVNP 60
>gi|387212823|gb|AFJ69150.1| polymerase epsilon 2 (p59 subunit), partial [Nannochloropsis
gaditana CCMP526]
Length = 96
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 24 RTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV-DKKRKLCADSDAKSKLFRERYNIIR 82
+ E + ++ ++ AF +P+ YD K F DK+R D A++ +FRERY ++R
Sbjct: 5 KDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGARAHMFRERYALVR 64
Query: 83 QRTLRHSLF 91
QR LRH LF
Sbjct: 65 QRVLRHELF 73
Score = 57.4 bits (137), Expect = 3e-05, Method: Composition-based stats.
Identities = 26/69 (37%), Positives = 40/69 (57%), Gaps = 1/69 (1%)
Query: 230 RTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV-DKKRKLCADSDAKSKLFRERYNIIR 288
+ E + ++ ++ AF +P+ YD K F DK+R D A++ +FRERY ++R
Sbjct: 5 KDEDDLNQEAIAIWDAFSMPKMTYDHRSKSFSFTFDKERPFNPDPGARAHMFRERYALVR 64
Query: 289 QRTLRHSLF 297
QR LRH LF
Sbjct: 65 QRVLRHELF 73
>gi|46136767|ref|XP_390075.1| hypothetical protein FG09899.1 [Gibberella zeae PH-1]
Length = 774
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 213 REQNNI---MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKL 269
RE +N ++ L + E TE N +++A++ P+F Y+ K F+ L
Sbjct: 178 REDSNSSFGISGLGVDEEQEETETNDPRAWLKIVNAYEQPRFIYNVAKKHFEKDPSPPSL 237
Query: 270 CADSDAKSKLFRERYNIIRQRTLR--------------HSLFNNINPNADSVKLDWVEYL 315
+ K+ +FR RY++I QR LR H L ++++ N +KL + +
Sbjct: 238 LPPASHKTTVFRNRYHVIHQRLLRNESFQSSTVSSSRKHKLDHSLS-NKQLLKLTPIANM 296
Query: 316 MSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEG 372
+ +H ++LG++ L + D TG + LDLSQ P + IVLV+G
Sbjct: 297 LGRHGSSH--MLLGLLVILPTGDLAISDLTGTIALDLSQAVAIPEDSAWFCPGMIVLVDG 354
Query: 373 HYKDQ 377
Y+++
Sbjct: 355 VYEEE 359
Score = 39.3 bits (90), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 61/133 (45%), Gaps = 17/133 (12%)
Query: 21 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 80
E TE N +++A++ P+F Y+ K F+ L + K+ +FR RY++
Sbjct: 195 EQEETETNDPRAWLKIVNAYEQPRFIYNVAKKHFEKDPSPPSLLPPASHKTTVFRNRYHV 254
Query: 81 IRQRTLRHSLFNNINPNADSV-KLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLG 139
I QR LR+ F + ++ KLD SL+N QL + + +LG
Sbjct: 255 IHQRLLRNESFQSSTVSSSRKHKLD-----HSLSN-----------KQLLKLTPIANMLG 298
Query: 140 KHQSPHLNLLCLI 152
+H S H+ L L+
Sbjct: 299 RHGSSHMLLGLLV 311
>gi|408399284|gb|EKJ78399.1| hypothetical protein FPSE_01419 [Fusarium pseudograminearum CS3096]
Length = 775
Score = 56.6 bits (135), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 49/185 (26%), Positives = 86/185 (46%), Gaps = 23/185 (12%)
Query: 213 REQNNI---MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKL 269
RE +N ++ L + E TE N +++A++ P+F Y+ K F+ L
Sbjct: 178 REDSNSSFGISGLGVDEEQEETETNDPRAWLKIVNAYEQPRFIYNVAKKHFEKDPSPPSL 237
Query: 270 CADSDAKSKLFRERYNIIRQRTLR--------------HSLFNNINPNADSVKLDWVEYL 315
+ K+ +FR RY++I QR LR H L ++++ N +KL + +
Sbjct: 238 LPPASHKTTVFRNRYHVIHQRLLRNESFQSSAVSSSRKHKLDHSLS-NKQLLKLTPIANM 296
Query: 316 MSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEG 372
+ +H ++LG++ L + D TG + LDLSQ P + IVLV+G
Sbjct: 297 LGRHGSSH--MLLGLLVILPTGDLAISDLTGTIALDLSQAVAIPEDSAWFCPGMIVLVDG 354
Query: 373 HYKDQ 377
Y+++
Sbjct: 355 VYEEE 359
Score = 39.3 bits (90), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 17/129 (13%)
Query: 25 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 84
TE N +++A++ P+F Y+ K F+ L + K+ +FR RY++I QR
Sbjct: 199 TETNDPRAWLKIVNAYEQPRFIYNVAKKHFEKDPSPPSLLPPASHKTTVFRNRYHVIHQR 258
Query: 85 TLRHSLFNNINPNADSV-KLDWVEYLMSLTNVNHKTVVLGMISQLKENITTSGLLGKHQS 143
LR+ F + ++ KLD SL+N QL + + +LG+H S
Sbjct: 259 LLRNESFQSSAVSSSRKHKLD-----HSLSN-----------KQLLKLTPIANMLGRHGS 302
Query: 144 PHLNLLCLI 152
H+ L L+
Sbjct: 303 SHMLLGLLV 311
>gi|389635573|ref|XP_003715439.1| DNA polymerase epsilon subunit B [Magnaporthe oryzae 70-15]
gi|351647772|gb|EHA55632.1| DNA polymerase epsilon subunit B [Magnaporthe oryzae 70-15]
Length = 865
Score = 56.6 bits (135), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 25/208 (12%)
Query: 196 YHNLVPLILHPVIPVSNREQNNIMN--WLKLSSECCRTEINSEEQIFSVISAFDIPQFDY 253
Y + L L P I + + + M L E ++ + V+ A++ P+ Y
Sbjct: 190 YSSTTRLGLRPSIALQRDDSQSSMGMSGLNFEEEPEEDTLSDPRKWLKVVGAYEQPRMVY 249
Query: 254 DPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADS------- 306
+ K F+ K + + K+ LFR R+N+I QR LR+ F + AD+
Sbjct: 250 NVAKKHFERDASKPSILPTASHKTLLFRNRFNVIHQRLLRNEAFQT-SAVADTKRGSLAR 308
Query: 307 ----------VKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTS 356
K+ + L+ +H ++LGM+ + + D TG + LD++Q +
Sbjct: 309 STSSLSSQQSYKITPIANLLGRHGSHH--MLLGMLVIMPAGNLAVSDLTGTIALDVTQAA 366
Query: 357 YHP---GLYTENCIVLVEGHYKDQILHV 381
P +T +VL++G Y+++ H
Sbjct: 367 TIPDDSSWFTPGMVVLIDGVYEEEDDHT 394
Score = 42.7 bits (99), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 589 PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQ 647
P + ++ V+T++ QG L + PV+W AL LYPLP ++L D + +
Sbjct: 767 PHDVRAAQKLVKTILDQGYLAPFRTAVRPVHWDHASALHLYPLPTALVLADATAPPFCVT 826
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 827 YEGCHVMNP 835
Score = 38.9 bits (89), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 3 LHRDNPSCTYDLIEFTTNECCRTEINSE-EQIFSVISAFDIPQFDYDPDLKKFKLVDKKR 61
L RD+ + + E + S+ + V+ A++ P+ Y+ K F+ K
Sbjct: 204 LQRDDSQSSMGMSGLNFEEEPEEDTLSDPRKWLKVVGAYEQPRMVYNVAKKHFERDASKP 263
Query: 62 KLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
+ + K+ LFR R+N+I QR LR+ F
Sbjct: 264 SILPTASHKTLLFRNRFNVIHQRLLRNEAFQ 294
>gi|440470474|gb|ELQ39542.1| DNA polymerase epsilon subunit B [Magnaporthe oryzae Y34]
gi|440483283|gb|ELQ63698.1| DNA polymerase epsilon subunit B [Magnaporthe oryzae P131]
Length = 896
Score = 56.2 bits (134), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 48/208 (23%), Positives = 89/208 (42%), Gaps = 25/208 (12%)
Query: 196 YHNLVPLILHPVIPVSNREQNNIMN--WLKLSSECCRTEINSEEQIFSVISAFDIPQFDY 253
Y + L L P I + + + M L E ++ + V+ A++ P+ Y
Sbjct: 190 YSSTTRLGLRPSIALQRDDSQSSMGMSGLNFEEEPEEDTLSDPRKWLKVVGAYEQPRMVY 249
Query: 254 DPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADS------- 306
+ K F+ K + + K+ LFR R+N+I QR LR+ F + AD+
Sbjct: 250 NVAKKHFERDASKPSILPTASHKTLLFRNRFNVIHQRLLRNEAFQT-SAVADTKRGSLAR 308
Query: 307 ----------VKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTS 356
K+ + L+ +H ++LGM+ + + D TG + LD++Q +
Sbjct: 309 STSSLSSQQSYKITPIANLLGRHGSHH--MLLGMLVIMPAGNLAVSDLTGTIALDVTQAA 366
Query: 357 YHP---GLYTENCIVLVEGHYKDQILHV 381
P +T +VL++G Y+++ H
Sbjct: 367 TIPDDSSWFTPGMVVLIDGVYEEEDDHT 394
Score = 42.4 bits (98), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 589 PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQ 647
P + ++ V+T++ QG L + PV+W AL LYPLP ++L D + +
Sbjct: 767 PHDVRAAQKLVKTILDQGYLAPFRTAVRPVHWDHASALHLYPLPTALVLADATAPPFCVT 826
Query: 648 NTDCIFINP 656
C +NP
Sbjct: 827 YEGCHVMNP 835
Score = 38.9 bits (89), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 1/91 (1%)
Query: 3 LHRDNPSCTYDLIEFTTNECCRTEINSE-EQIFSVISAFDIPQFDYDPDLKKFKLVDKKR 61
L RD+ + + E + S+ + V+ A++ P+ Y+ K F+ K
Sbjct: 204 LQRDDSQSSMGMSGLNFEEEPEEDTLSDPRKWLKVVGAYEQPRMVYNVAKKHFERDASKP 263
Query: 62 KLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
+ + K+ LFR R+N+I QR LR+ F
Sbjct: 264 SILPTASHKTLLFRNRFNVIHQRLLRNEAFQ 294
>gi|258568484|ref|XP_002584986.1| predicted protein [Uncinocarpus reesii 1704]
gi|237906432|gb|EEP80833.1| predicted protein [Uncinocarpus reesii 1704]
Length = 688
Score = 56.2 bits (134), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 14/152 (9%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF-- 297
F VI+AF+ P+ YD D + F + L S + + FR+RYN + QR LR++ F
Sbjct: 122 FRVINAFEQPRVIYDSDRRHFVMSPFSSSLLPSSCDRIETFRDRYNRVYQRVLRNNAFRK 181
Query: 298 -NNIN----PNADSVKLDWV---EYLMSLTNVNHKT-VVLGMISQLKENRYFLEDPTGIV 348
+NI+ P S+ D V ++ SL N + ++LG+I +L D TG +
Sbjct: 182 PSNISPAFRPTQSSLSPDGVYNITFVSSLQGRNSTSHLLLGLIHLSPSGGLYLSDLTGTI 241
Query: 349 QLDLSQTSYHPG---LYTENCIVLVEGHYKDQ 377
L + P + I+LV+G Y++Q
Sbjct: 242 ALSIQHAKGVPAGETWFAPGMILLVDGIYEEQ 273
Score = 48.9 bits (115), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 25/64 (39%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Query: 594 ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCI 652
+S V++L+ QG L P + PV W AL LYPLP +IL D + +T+ C
Sbjct: 594 VSHKLVKSLLDQGHLSPFPTTVRPVMWDYATALHLYPLPTTLILADPAVGPFTLTYEGCH 653
Query: 653 FINP 656
INP
Sbjct: 654 VINP 657
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 3/66 (4%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF-- 91
F VI+AF+ P+ YD D + F + L S + + FR+RYN + QR LR++ F
Sbjct: 122 FRVINAFEQPRVIYDSDRRHFVMSPFSSSLLPSSCDRIETFRDRYNRVYQRVLRNNAFRK 181
Query: 92 -NNINP 96
+NI+P
Sbjct: 182 PSNISP 187
>gi|226292339|gb|EEH47759.1| DNA polymerase epsilon subunit B [Paracoccidioides brasiliensis
Pb18]
Length = 744
Score = 56.2 bits (134), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 62/274 (22%), Positives = 114/274 (41%), Gaps = 61/274 (22%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 298
V+SAF+ + Y+ + K F ++ L + ++ +FR+RYN+I QR LR+ F
Sbjct: 164 VVSAFEQNRPVYNVNKKNFDIITTPPSLFPSASQRANIFRDRYNLIYQRLLRNEAFQIPL 223
Query: 299 -----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLS 353
+ + + S K+ + L+ + +H ++LG+++ + DPTG + LD+
Sbjct: 224 QQSNSSHSSASRSYKVTSIANLLGRSGTSH--LLLGLLAVSPAGELSISDPTGSITLDIR 281
Query: 354 QTSYHP---GLYTENCIVLVEGHYKDQILH--------------------VDALGFPPPE 390
P +T IVL +G Y+++ + V ++G PP E
Sbjct: 282 DARAVPEDGAWFTPGMIVLADGVYREEEVVSGSTLTGSGGVGGTIGGKFIVASVGGPPCE 341
Query: 391 ------ASKNSRLYFGNQNIWGGPSPVSLKSVN-------RMTKMEK-----------NN 426
+ + R+ G+ + GG V V RM ++EK
Sbjct: 342 RREVSSGAAHHRVADGDMTVEGGFGWVDFLGVGSERSRGPRMRQIEKICLHKGQPEEQEK 401
Query: 427 ENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFV 460
IV++ +V+LD K E ++ FQ +
Sbjct: 402 VRKQIVVMGEVNLDVPKT----VEALSYVFQSYT 431
Score = 42.4 bits (98), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ-LNAYTIQNTDCIF 653
S+ V+T++ Q L P ++ PV W L LYPLP ++L D + + C
Sbjct: 651 SRKLVKTILDQSYLSPFPQHIRPVLWDYASVLHLYPLPTAMVLADSDAEPFAVTYEGCHV 710
Query: 654 INP 656
+NP
Sbjct: 711 MNP 713
Score = 39.3 bits (90), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
V+SAF+ + Y+ + K F ++ L + ++ +FR+RYN+I QR LR+ F
Sbjct: 164 VVSAFEQNRPVYNVNKKNFDIITTPPSLFPSASQRANIFRDRYNLIYQRLLRNEAFQ 220
>gi|344303520|gb|EGW33769.1| DNA-directed DNA polymerase epsilon, subunit B [Spathaspora
passalidarum NRRL Y-27907]
Length = 660
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 107/258 (41%), Gaps = 52/258 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKR-----KLCADSDAKSKLFRERYNIIRQRTLRH 294
F I+ D P+ +D K+F + KK+ L + F RY+++ R R+
Sbjct: 122 FKFITPEDQPRSIFDKSRKQFNISTKKKGSLFQSLSENLSLSIDTFNNRYHLLSDRLSRN 181
Query: 295 SLFNNINPNADSVKLDWVEYLMSLTNVN----------------HKTVVLGMISQLKENR 338
F + + S MSL + N K ++ G++S+ ++
Sbjct: 182 ENFQKSSTVSISSLS------MSLKDGNLANEITLIKNVLGRDGQKFILFGLLSKNANDQ 235
Query: 339 YFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYK----------DQI---LHVDAL 384
Y LED T ++L+LSQT G Y V+VEG Y D I +V +
Sbjct: 236 YILEDSTDNIELNLSQTHKTEGSFYCTGMFVIVEGIYSASGGSSNQAHDYIGGCFYVSTI 295
Query: 385 GFPPPEASKNSRLYFGNQNIWG--GPSPVSLKSVNRMTKMEKNN---------ENAMIVI 433
G PP E + S +GN + G + VS + + ++TK K ++ I +
Sbjct: 296 GQPPAERREKSLDAYGNVDFLGIHKQAAVSGEKITKITKTLKRKLTTLERSLIDHKFIFV 355
Query: 434 LSDVHLDNDKVRNNLCEF 451
SD LD+ KV + L +F
Sbjct: 356 GSDCFLDSFKVLDGLKKF 373
>gi|225680664|gb|EEH18948.1| DNA polymerase epsilon subunit B [Paracoccidioides brasiliensis
Pb03]
Length = 744
Score = 55.8 bits (133), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 73/147 (49%), Gaps = 13/147 (8%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 298
V+SAF+ + Y+ + K F ++ L + ++ +FR+RYN+I QR LR+ F
Sbjct: 164 VVSAFEQNRPVYNVNKKNFDIITTPPSLFPSASQRANIFRDRYNLIYQRLLRNEAFQIPL 223
Query: 299 -----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLS 353
+ + + S K+ + L+ + +H ++LG+++ + DPTG + LD+
Sbjct: 224 QQSNSSHSSASRSYKVTSIANLLGRSGTSH--LLLGLLAVSPAGELSISDPTGSITLDIR 281
Query: 354 QTSYHP---GLYTENCIVLVEGHYKDQ 377
P +T IVL +G Y+++
Sbjct: 282 DARAVPEDGAWFTPGMIVLADGVYREE 308
Score = 42.4 bits (98), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ-LNAYTIQNTDCIF 653
S+ V+T++ Q L P ++ PV W L LYPLP ++L D + + C
Sbjct: 651 SRKLVKTILDQSYLSPFPQHIRPVLWDYASVLHLYPLPTAMVLADSDAEPFAVTYEGCHV 710
Query: 654 INP 656
+NP
Sbjct: 711 MNP 713
Score = 39.3 bits (90), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 33/57 (57%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 92
V+SAF+ + Y+ + K F ++ L + ++ +FR+RYN+I QR LR+ F
Sbjct: 164 VVSAFEQNRPVYNVNKKNFDIITTPPSLFPSASQRANIFRDRYNLIYQRLLRNEAFQ 220
>gi|400599261|gb|EJP66965.1| DNA polymerase alpha/epsilon subunit B [Beauveria bassiana ARSEF
2860]
Length = 788
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/159 (25%), Positives = 70/159 (44%), Gaps = 18/159 (11%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
N +I AF+ P+ Y+ + K F+ K L + K+ FR RY++I QR LR
Sbjct: 202 NDPRGWLQIIDAFEQPRLFYNVEKKHFERDTTKPSLLPQASHKTAAFRSRYHVIHQRLLR 261
Query: 294 HSLF-------------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYF 340
+ F + N ++K+ + ++ NH ++LG ++ L
Sbjct: 262 NESFQTSTVSSSRSRALQRTSSNPQNLKITPIANMLGRHGSNH--MLLGQLNILPTGELA 319
Query: 341 LEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKD 376
+ D TG + L++ Q P + IVLV+G Y++
Sbjct: 320 ISDLTGTIALEIKQAVAVPDDSAWFCPGMIVLVDGVYEE 358
Score = 42.0 bits (97), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 574 REELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
+EE + P++ ++ V+T++ QG L ++ PV+W AL LYPLP
Sbjct: 675 QEEPAVTTTTTTVSLPQDAHSAEKLVKTILDQGHLSPFRTSIRPVHWDFVSALHLYPLPT 734
Query: 634 LVILGD-QLNAYTIQNTDCIFINP 656
++L D + + C +NP
Sbjct: 735 ALVLVDASAPPFCVAYEGCHVMNP 758
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 32/65 (49%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
N +I AF+ P+ Y+ + K F+ K L + K+ FR RY++I QR LR
Sbjct: 202 NDPRGWLQIIDAFEQPRLFYNVEKKHFERDTTKPSLLPQASHKTAAFRSRYHVIHQRLLR 261
Query: 88 HSLFN 92
+ F
Sbjct: 262 NESFQ 266
>gi|261331859|emb|CBH14853.1| DNA polymerase epsilon subunit b, putative [Trypanosoma brucei
gambiense DAL972]
Length = 535
Score = 55.1 bits (131), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 92/399 (23%), Positives = 155/399 (38%), Gaps = 40/399 (10%)
Query: 282 ERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLT--------NVNHKTVVLGMISQ 333
+RY R+R LR LF+ DS K + L SL + + VLGM+ +
Sbjct: 125 QRYLFARKRCLRSGLFSR-----DSSKQPIDQGLPSLVPSIALEGIDPSDTVAVLGMLVK 179
Query: 334 LKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLV-EGHYKDQILHVDALGFPPPEAS 392
Y LED G V+L + + P +V +G + + V ++ PP E
Sbjct: 180 HSSATY-LEDIYGRVKLIMRGCVHPPVGVVGEGFFVVVKGQWVGGLFVVASVDLPPAERR 238
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI 452
+++ G+ G P + + R EK + ++++++S +HLD ++L F
Sbjct: 239 EDTLRVVGSDFDLFGRRPDDVVAAFRR---EKTSLGSVVIVMSQIHLDQRSTVDSLISFF 295
Query: 453 TSEFQGFVPNSTMATNPCRV-QYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN 511
E Q T V ++CS I L + C ++ +I V N
Sbjct: 296 -REMQNRSEAELTDTTLVMVGEFCSSPIHYDDVSHLPEPFEGCDRYRSLMNILATVITVN 354
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKF-ITSEF----QGFVPNSTMATNPCRVQYC 566
+ + + V G L LP+ I S F Q + +A NPCR+++
Sbjct: 355 APS--VAQLTQVVIVPGCGDITGLLGVLPQPPIVSTFGKVLQARLKKVVLAPNPCRLRFF 412
Query: 567 SQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLV----SQGTLVSLPLNLCP----- 617
+ E++VVR + + F + S+H T V S + +L P
Sbjct: 413 THEMIVVRRDFSRSLREKERTF----EWSRHEASTPVISFESIAKTILDEAHLAPGVTEG 468
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+ W AL L LP L+++ D + +NP
Sbjct: 469 ILWKADKALCLPVLPHLLVMCDSTEQWECSYKGVRIVNP 507
>gi|440631955|gb|ELR01874.1| hypothetical protein GMDG_05061 [Geomyces destructans 20631-21]
Length = 728
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 75/159 (47%), Gaps = 26/159 (16%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN--- 298
VI A + P+ Y+ K F ++ K L + +K++LFR RYNII QR LR F
Sbjct: 165 VIGAREQPRLLYNFKTKHFDKINTKASLLPLTASKTQLFRNRYNIIHQRLLRTESFQVPT 224
Query: 299 -NINP-----NADSVKLDWVEYLMSLTNVNHKT----VVLGMISQLKENRYFLEDPTGIV 348
N P ++ + L + N+ ++ ++LG+++ L D TG +
Sbjct: 225 ANRAPTLHRSSSSMITAQQTHRLTPIANLLGRSGSPHLLLGLLTISPTGTLALSDLTGSI 284
Query: 349 QLDLSQ--------TSYHPGLYTENCIVLVEGHYKDQIL 379
LDL+ T + PG+ +VLV+G Y+D+ L
Sbjct: 285 SLDLTHAQVSEPDATWFVPGM-----VVLVDGIYEDEDL 318
Score = 50.4 bits (119), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 60/123 (48%), Gaps = 26/123 (21%)
Query: 558 TNPCRVQYC----SQEILVVREELLSKMCRNCIK-----FPEEGDI-------------- 594
+NP R+ C + EI++ R+++ S+ R+ I+ PE+ ++
Sbjct: 577 SNPARL--CLFGPTHEIVLFRDDVSSRFRRHAIRTASAPVPEDPELDIDAETQEDPSIHA 634
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ +TL+ QG L L PV W GAL LYPLP +++ D + NA+ + C
Sbjct: 635 ARKLTQTLLDQGHLSPFRLTDRPVLWDYAGALQLYPLPSALVVCDAEANAFVEKYEGCCV 694
Query: 654 INP 656
+NP
Sbjct: 695 MNP 697
Score = 46.6 bits (109), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 38/120 (31%), Positives = 57/120 (47%), Gaps = 16/120 (13%)
Query: 36 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNIN 95
VI A + P+ Y+ K F ++ K L + +K++LFR RYNII QR LR F
Sbjct: 165 VIGAREQPRLLYNFKTKHFDKINTKASLLPLTASKTQLFRNRYNIIHQRLLRTESFQ--V 222
Query: 96 PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITT-SGLLGKHQSPHLNLLCLIWV 154
P A+ H++ + +Q +T + LLG+ SPHL LL L+ +
Sbjct: 223 PTANRAP------------TLHRSSSSMITAQQTHRLTPIANLLGRSGSPHL-LLGLLTI 269
>gi|255722918|ref|XP_002546393.1| hypothetical protein CTRG_05871 [Candida tropicalis MYA-3404]
gi|240130910|gb|EER30472.1| hypothetical protein CTRG_05871 [Candida tropicalis MYA-3404]
Length = 611
Score = 54.3 bits (129), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/102 (28%), Positives = 58/102 (56%), Gaps = 15/102 (14%)
Query: 552 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK------------HFV 599
PN+++++NP + Y SQE+++++++ +SK+ +N + F DI+K V
Sbjct: 469 PNTSISSNPTTLAYLSQEVIIIKDQFMSKLRKNDLNFGTIEDINKDQILSSKTKQARKLV 528
Query: 600 RTLVSQGTL-VSLPLNLCPVYWSQYGALSLYPLPDLVILGDQ 640
+TL+ QG L ++ LN+ + + L P P++V+L D+
Sbjct: 529 KTLLDQGYLGINNGLNMVNLQYDH--CFRLEPAPNMVVLHDE 568
Score = 52.0 bits (123), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 52/199 (26%), Positives = 84/199 (42%), Gaps = 34/199 (17%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKK-----RKLCADSDAKSKLFRERYNIIRQRTLRH 294
F VISA + P+ +DP K+F ++ + KL AK + RY++IR R R+
Sbjct: 135 FKVISAKNQPKSVFDPSRKQFDIIYQSDNSLLSKLQDSLPAKVNSYYNRYSLIRDRLSRN 194
Query: 295 SLFNN--------INPNADSVKLDWVEYLMS--LTNVNHKTVVLGMISQLKENRYFLEDP 344
F +N +K L+ L K ++ G++ + + LED
Sbjct: 195 ENFQKTSAMSISALNSIKSGIKQSHEISLIKNMLGRDGQKFLLFGLLCKNNNGEFILEDE 254
Query: 345 TGIVQLDLSQTSYHPGLYTENCI---VLVEG--------------HYKDQILHVDALGFP 387
T ++L+L+QT G + +C+ LVEG +Y +V +G P
Sbjct: 255 TDYIELNLNQTFKSSGCF--HCLGMYFLVEGIYSASGSSTSNQDSNYMGGCFYVSNIGHP 312
Query: 388 PPEASKNSRLYFGNQNIWG 406
P E S Y+GN + G
Sbjct: 313 PSERRDKSLDYYGNLDFLG 331
Score = 43.1 bits (100), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 15/45 (33%), Positives = 33/45 (73%)
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 505
PN+++++NP + Y SQE+++++++ +SK+ +N + F DI+K
Sbjct: 469 PNTSISSNPTTLAYLSQEVIIIKDQFMSKLRKNDLNFGTIEDINK 513
>gi|302845278|ref|XP_002954178.1| hypothetical protein VOLCADRAFT_94958 [Volvox carteri f.
nagariensis]
gi|300260677|gb|EFJ44895.1| hypothetical protein VOLCADRAFT_94958 [Volvox carteri f.
nagariensis]
Length = 442
Score = 53.9 bits (128), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 33/61 (54%), Gaps = 1/61 (1%)
Query: 597 HFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAY-TIQNTDCIFIN 655
H TL+ QG LV LPL PVYW ALSLYPLPD V+L D + C +N
Sbjct: 79 HLALTLLQQGHLVPLPLLAQPVYWQYDSALSLYPLPDAVVLADATAGQEEFVHEGCRVLN 138
Query: 656 P 656
P
Sbjct: 139 P 139
>gi|71746192|ref|XP_827653.1| DNA polymerase epsilon subunit B [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831818|gb|EAN77323.1| DNA polymerase epsilon subunit B, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
Length = 535
Score = 53.5 bits (127), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 91/399 (22%), Positives = 155/399 (38%), Gaps = 40/399 (10%)
Query: 282 ERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLT--------NVNHKTVVLGMISQ 333
+RY R+R LR LF+ DS K + L SL + + VLGM+ +
Sbjct: 125 QRYLFARKRCLRSGLFSR-----DSSKQPIDQGLPSLVPSIALEGIDPSDTVAVLGMLVK 179
Query: 334 LKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLV-EGHYKDQILHVDALGFPPPEAS 392
Y LED G V+L + + P +V +G + + V ++ PP E
Sbjct: 180 HSSATY-LEDIYGRVKLIMRGCVHPPVGVVGEGFFVVVKGQWVGGLFVVASVDLPPAERR 238
Query: 393 KNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI 452
+++ G+ G P + + R EK + ++++++S +HLD ++L F
Sbjct: 239 EDTLRVVGSDFDLFGRRPDDVVAAFRR---EKTSLGSVVIVMSQIHLDQRSTVDSLISFF 295
Query: 453 TSEFQGFVPNSTMATNPCRV-QYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN 511
E Q T V ++CS I L + C ++ +I V +
Sbjct: 296 -REMQNRSEAELTDTTLVMVGEFCSSPIHYDDVSHLPEPFEGCDRYRSLMNILATVITVH 354
Query: 512 GEKDIIFLIVPKIYVEGTVTSKVLSPALPKF-ITSEF----QGFVPNSTMATNPCRVQYC 566
+ + + V G L LP+ I S F Q + +A NPCR+++
Sbjct: 355 APS--VAQLTQVVIVPGCGDITGLLGVLPQPPIVSTFGKVLQARLKKVVLAPNPCRLRFF 412
Query: 567 SQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLV----SQGTLVSLPLNLCP----- 617
+ E++VVR + + F + S+H T V S + +L P
Sbjct: 413 THEMIVVRRDFSRSLREKERTF----EWSRHEASTPVISFESIAKTILDEAHLAPGVTEG 468
Query: 618 VYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINP 656
+ W AL L LP L+++ D + +NP
Sbjct: 469 ILWKADKALCLPVLPHLLVMCDSTEQWECSYKGVRIVNP 507
>gi|406860719|gb|EKD13776.1| DNA polymerase alpha/epsilon subunit B [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 805
Score = 53.1 bits (126), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/177 (23%), Positives = 76/177 (42%), Gaps = 21/177 (11%)
Query: 219 MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 278
M+ L + S+ + + VI AF+ P+ Y+ K F K L + K++
Sbjct: 196 MSNLDVESQDDDEGLRDPRKWLKVIDAFEQPRLVYNVAKKHFDRDTSKPSLLPQASHKTQ 255
Query: 279 LFRERYNIIRQRTLRHSLFNN----------------INPNADSVKLDWVEYLMSLTNVN 322
+FR RYN+I+QR LR+ F + + KL + L+ +
Sbjct: 256 VFRNRYNLIQQRLLRNESFQTPTFEASKASSKRSSSRLATTQQAYKLTPISNLLGRNGTS 315
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKD 376
H ++LG+++ + D +G + LDL+ P + IV+V+G Y++
Sbjct: 316 H--MLLGLLTISPTGTLAINDLSGSIALDLTHAKPIPEDGAWFAPGMIVIVDGTYEE 370
Score = 44.7 bits (104), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 42/199 (21%), Positives = 78/199 (39%), Gaps = 45/199 (22%)
Query: 467 TNPCRVQYC--SQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKI 524
+NP R+ + EI+++R+ + S++ R IKF
Sbjct: 612 SNPSRLSLLGPTHEIILLRDNMTSRLRRTAIKF--------------------------- 644
Query: 525 YVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRN 584
S S P+ + + +P++ P +V+ +++L+ R
Sbjct: 645 -------SPSKSAPAPEDEDEDHEMDIPHT--PPPPATSDSAPAPDMVMDDDVLAAESRV 695
Query: 585 CIKFPEEGDIS------KHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILG 638
EE +S + V+T++ QG L + + PV W AL +YPLP ++L
Sbjct: 696 PQPAVEEETVSSDLQAARKLVKTILDQGYLSPFGMAIRPVLWDYASALQVYPLPTAMVLA 755
Query: 639 D-QLNAYTIQNTDCIFINP 656
D + A+ + C +NP
Sbjct: 756 DTEAPAFCVTYEGCHVMNP 774
Score = 42.4 bits (98), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 32/60 (53%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 93
VI AF+ P+ Y+ K F K L + K+++FR RYN+I+QR LR+ F
Sbjct: 217 LKVIDAFEQPRLVYNVAKKHFDRDTSKPSLLPQASHKTQVFRNRYNLIQQRLLRNESFQT 276
>gi|42409427|dbj|BAD10772.1| DNA polymerase epsilon subunit B-like protein [Oryza sativa
Japonica Group]
Length = 303
Score = 52.8 bits (125), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 360 GLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNR 418
G + EN ++L EG + I V+ GFPP E + S + +GG ++ + R
Sbjct: 139 GFFVENTVILAEGELLSNGIFQVNTCGFPPLEDREASLSMLMGLDFFGG-GVIAAEETVR 197
Query: 419 MTKMEKNNENAMIVILSDVHLDNDKV 444
++ +EK N M VILSDV LD+ ++
Sbjct: 198 LSTLEKKAMNDMFVILSDVWLDSSEL 223
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 28/62 (45%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFI 654
S V T+ Q L LPL + P+ W+ L LYP P ++LGD+ +
Sbjct: 220 SSELVATITHQSHLCPLPLTVQPIIWNYDHCLRLYPTPHTIVLGDKSEQKAFKYAGITCF 279
Query: 655 NP 656
NP
Sbjct: 280 NP 281
>gi|378734570|gb|EHY61029.1| DNA polymerase epsilon subunit 2 [Exophiala dermatitidis
NIH/UT8656]
Length = 866
Score = 52.4 bits (124), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/165 (27%), Positives = 71/165 (43%), Gaps = 23/165 (13%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
VISAF+ P+ Y K F+ + L K +FR RY+++ QR LR+ F
Sbjct: 231 VISAFEQPRMLYSTSKKCFEPMAGPPSLLPPIQHKISMFRNRYHVVHQRLLRNESFQAPT 290
Query: 298 --------------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLED 343
+++ + KL + L+ + +H ++LGM+ L D
Sbjct: 291 FSTITRPPSLMHSGSSVATLQQAYKLTPISNLLGRSGTSH--LLLGMLVHSAAGDLALSD 348
Query: 344 PTGIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQILHVDALG 385
+G V LD+S P + IVLVEG Y++ H +LG
Sbjct: 349 LSGSVVLDMSIARPIPENGAWFCPGMIVLVEGTYEEDGSHNSSLG 393
Score = 42.7 bits (99), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 2/64 (3%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQY-GALSLYPLPDLVILGD-QLNAYTIQNTDCI 652
++ ++T++ Q L P ++ PV+W +LSLYPLP ++L D + + I C
Sbjct: 763 ARKLIKTVLDQSHLAPFPPSIRPVFWDHATSSLSLYPLPTALVLADAETPGFAITYEGCH 822
Query: 653 FINP 656
+NP
Sbjct: 823 VMNP 826
>gi|169612808|ref|XP_001799821.1| hypothetical protein SNOG_09531 [Phaeosphaeria nodorum SN15]
gi|160702589|gb|EAT82796.2| hypothetical protein SNOG_09531 [Phaeosphaeria nodorum SN15]
Length = 552
Score = 51.6 bits (122), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 90/440 (20%), Positives = 153/440 (34%), Gaps = 114/440 (25%)
Query: 326 VVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHP--GLY-TENCIVLVEGHYKDQ----- 377
++LGM++ L D TG + LD+ P G Y IVLVEG Y++
Sbjct: 88 LLLGMLTVSPAGALSLSDLTGTIVLDIQHARPIPETGAYFAPGMIVLVEGSYEEDSGVSS 147
Query: 378 ----------ILHVDALGFP---PPEASKNSRL--------------YFGNQNIWG-GPS 409
+ LGF PP + + L FG + G G
Sbjct: 148 TLGGTGGIGGTIGGKFLGFSVGHPPCERRTATLGGTDEIDKSSLAGPAFGWTDFLGVGSQ 207
Query: 410 PVSLKSVNRMTKMEKNNENAM-IVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATN 468
+ +N++ + E A IVI SD+HLD L + + P+ T A
Sbjct: 208 RATGSRMNKIGSKLLDPEQAHNIVIASDLHLDVPATLTALRTLLRTH----TPDPTAAHP 263
Query: 469 PCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN----GEKDIIFL----- 519
+ + L I++ E D V + ++F+
Sbjct: 264 VYPLAIILMGNFSSKASLAGVPGAGSIEYKEHFDALASVLADFPQLIAHTTLVFIPGDND 323
Query: 520 IVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNST-----------------MATNPCR 562
P ++ G T P +P T+ + + + +NP R
Sbjct: 324 AWPSAFLSGAATPLPRKP-VPALFTNRIRRVIAEANREVWGAGKAKGKEGEVIWTSNPSR 382
Query: 563 VQY--CSQEILVVREELLSKMCRNCIKFP---EEGD------------------------ 593
+ + E+ ++R++L ++ R I+FP EE D
Sbjct: 383 LSWFGVKGEMAIIRDDLAGRLQRTSIRFPKPDEEVDDEMPFAPSAQDADADADTMDLDLP 442
Query: 594 ----------------ISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVIL 637
++ RT++SQ L PL+ P++W L+LYPLP+ ++L
Sbjct: 443 ASHHAPTQQALDHDTLTARSLTRTILSQSHLSPFPLSARPLHWDFAHVLNLYPLPNSLVL 502
Query: 638 GD-QLNAYTIQNTDCIFINP 656
D + A+ ++ C +NP
Sbjct: 503 ADSEAPAFVVKYCGCTVMNP 522
>gi|392871531|gb|EAS33446.2| DNA polymerase epsilon subunit B [Coccidioides immitis RS]
Length = 742
Score = 51.6 bits (122), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/169 (27%), Positives = 75/169 (44%), Gaps = 34/169 (20%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
N Q V++AFD P+ Y+ D + F L + S ++ FR+RYN + QR LR
Sbjct: 159 NDPRQWIRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRIDAFRDRYNRVYQRVLR 218
Query: 294 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE----------------- 336
+S F P+ S + +E S ++ N + L +S L+
Sbjct: 219 NSAFR--QPSTVSRQSRQLE--SSTSSTNKGSYSLTFVSSLQGRPGTSHLLLGLLHLSPI 274
Query: 337 NRYFLEDPTGIVQLDL--------SQTSYHPGLYTENCIVLVEGHYKDQ 377
+ L D TG V LDL +T + PG+ ++LV+G Y++Q
Sbjct: 275 GGFCLSDLTGSVALDLRFAKGVPEGETWFVPGM-----VLLVDGIYEEQ 318
Score = 45.1 bits (105), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 52/108 (48%), Gaps = 4/108 (3%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
N Q V++AFD P+ Y+ D + F L + S ++ FR+RYN + QR LR
Sbjct: 159 NDPRQWIRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRIDAFRDRYNRVYQRVLR 218
Query: 88 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTS 135
+S F P+ S + +E S ++ N + L +S L+ TS
Sbjct: 219 NSAFR--QPSTVSRQSRQLE--SSTSSTNKGSYSLTFVSSLQGRPGTS 262
Score = 43.5 bits (101), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ V++++ QG L P V+W AL LYPLP +IL D +++ C
Sbjct: 649 ARKLVKSILDQGHLSPFPTTTRAVFWDHASALYLYPLPTCLILADTSTGPFSVTYEGCHV 708
Query: 654 INP 656
+NP
Sbjct: 709 LNP 711
>gi|71030400|ref|XP_764842.1| hypothetical protein [Theileria parva strain Muguga]
gi|68351798|gb|EAN32559.1| hypothetical protein TP02_0276 [Theileria parva]
Length = 1194
Score = 51.2 bits (121), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 556 MATNPCRVQYCSQEILVVREELLSKMCRNCI-----KFPEEGDISKHFVRTLVSQGTLVS 610
MATNPCR+++ + ++ R ++LS + + I D+S V T+V Q L+
Sbjct: 404 MATNPCRIRHWGRRMIFFRHDILSHLLLDSIITTSNYSANSKDLSDMLVETIVGQSHLLP 463
Query: 611 LPLNLCPVYWSQYGALSLYPLPDLVILGD 639
L V S +L L+PLPDL+ LGD
Sbjct: 464 NKPGLSTV-LSHDSSLLLHPLPDLICLGD 491
>gi|320037896|gb|EFW19832.1| conserved hypothetical protein [Coccidioides posadasii str.
Silveira]
Length = 741
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
N Q V++AFD P+ Y+ D + F L + S ++ FR+RYN + QR LR
Sbjct: 158 NDPRQWIRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRIDAFRDRYNRVYQRVLR 217
Query: 294 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE----------------- 336
+S F +V + S ++ N + L +S L+
Sbjct: 218 NSAFR----QPSNVSRQSRQLESSTSSTNKGSYSLTFVSSLQGRPGTSHLLLGLLHLSPI 273
Query: 337 NRYFLEDPTGIVQLDL--------SQTSYHPGLYTENCIVLVEGHYKDQ 377
+ L D TG V LDL +T + PG+ ++LV+G Y++Q
Sbjct: 274 GGFCLSDLTGSVALDLRFAKGVPEGETWFVPGM-----VLLVDGIYEEQ 317
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
N Q V++AFD P+ Y+ D + F L + S ++ FR+RYN + QR LR
Sbjct: 158 NDPRQWIRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRIDAFRDRYNRVYQRVLR 217
Query: 88 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTS 135
+S F +V + S ++ N + L +S L+ TS
Sbjct: 218 NSAFR----QPSNVSRQSRQLESSTSSTNKGSYSLTFVSSLQGRPGTS 261
Score = 43.5 bits (101), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ V++++ QG L P V+W AL LYPLP +IL D +++ C
Sbjct: 648 ARKLVKSILDQGHLSPFPTTTRAVFWDHASALYLYPLPTCLILADTSTGPFSVTYEGCHV 707
Query: 654 INP 656
+NP
Sbjct: 708 LNP 710
>gi|303316322|ref|XP_003068163.1| DNA polymerase epsilon subunit B family protein [Coccidioides
posadasii C735 delta SOWgp]
gi|240107844|gb|EER26018.1| DNA polymerase epsilon subunit B family protein [Coccidioides
posadasii C735 delta SOWgp]
Length = 741
Score = 50.8 bits (120), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 45/169 (26%), Positives = 72/169 (42%), Gaps = 34/169 (20%)
Query: 234 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 293
N Q V++AFD P+ Y+ D + F L + S ++ FR+RYN + QR LR
Sbjct: 158 NDPRQWIRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRIDAFRDRYNRVYQRVLR 217
Query: 294 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE----------------- 336
+S F +V + S ++ N + L +S L+
Sbjct: 218 NSAFR----QPSNVSRQSRQLESSTSSTNKGSYSLTFVSSLQGRPGTSHLLLGLLHLSPI 273
Query: 337 NRYFLEDPTGIVQLDL--------SQTSYHPGLYTENCIVLVEGHYKDQ 377
+ L D TG V LDL +T + PG+ ++LV+G Y++Q
Sbjct: 274 GGFCLSDLTGSVALDLRFAKGVPEGETWFVPGM-----VLLVDGIYEEQ 317
Score = 44.7 bits (104), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/108 (28%), Positives = 49/108 (45%), Gaps = 4/108 (3%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
N Q V++AFD P+ Y+ D + F L + S ++ FR+RYN + QR LR
Sbjct: 158 NDPRQWIRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRIDAFRDRYNRVYQRVLR 217
Query: 88 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENITTS 135
+S F +V + S ++ N + L +S L+ TS
Sbjct: 218 NSAFR----QPSNVSRQSRQLESSTSSTNKGSYSLTFVSSLQGRPGTS 261
Score = 43.5 bits (101), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ V++++ QG L P V+W AL LYPLP +IL D +++ C
Sbjct: 648 ARKLVKSILDQGHLSPFPTTTRAVFWDHASALYLYPLPTCLILADTSTGPFSVTYEGCHV 707
Query: 654 INP 656
+NP
Sbjct: 708 LNP 710
>gi|119188407|ref|XP_001244810.1| hypothetical protein CIMG_04251 [Coccidioides immitis RS]
Length = 610
Score = 50.8 bits (120), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 75/159 (47%), Gaps = 16/159 (10%)
Query: 222 LKLSSECCRTEI---NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 278
+ L C I N Q V++AFD P+ Y+ D + F L + S ++
Sbjct: 144 IDLQGGVCEDNIFSPNDPRQWIRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRID 203
Query: 279 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENR 338
FR+RYN + QR LR+S F P+ S + +E S ++ N + L +S L + R
Sbjct: 204 AFRDRYNRVYQRVLRNSAFR--QPSTVSRQSRQLE--SSTSSTNKGSYSLTFVSSL-QGR 258
Query: 339 YFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQ 377
L G+ + +T + PG+ ++LV+G Y++Q
Sbjct: 259 PDLRFAKGVPE---GETWFVPGM-----VLLVDGIYEEQ 289
Score = 43.5 bits (101), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 50/102 (49%), Gaps = 4/102 (3%)
Query: 28 NSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLR 87
N Q V++AFD P+ Y+ D + F L + S ++ FR+RYN + QR LR
Sbjct: 159 NDPRQWIRVVNAFDQPRLLYNMDKRNFALSPSSASVFPSSSSRIDAFRDRYNRVYQRVLR 218
Query: 88 HSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLK 129
+S F P+ S + +E S ++ N + L +S L+
Sbjct: 219 NSAFR--QPSTVSRQSRQLE--SSTSSTNKGSYSLTFVSSLQ 256
>gi|302498218|ref|XP_003011107.1| DNA polymerase epsilon subunit B, putative [Arthroderma benhamiae
CBS 112371]
gi|291174655|gb|EFE30467.1| DNA polymerase epsilon subunit B, putative [Arthroderma benhamiae
CBS 112371]
Length = 780
Score = 48.5 bits (114), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 70/304 (23%), Positives = 112/304 (36%), Gaps = 63/304 (20%)
Query: 207 VIPVSNREQNNIMNWLK----LSSECCRTEINSEEQIFS--------------VISAFDI 248
IP RE N I + ++ L+SE + E S VISAF+
Sbjct: 178 AIPPQKREHNTIDSHVQESGNLTSEPREAGPDGAESAESPEDAANDHARKRVKVISAFEQ 237
Query: 249 PQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLF----------- 297
+ Y+ + K F+ + L ++ + LFR+RY I +R LR+ F
Sbjct: 238 QRLTYNMNKKHFESPHEPASLLPPANNRVSLFRDRYYRIHERLLRNETFQTSTLPTSFGE 297
Query: 298 -NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTS 356
N + K+ + L + H + L IS Y L DP+G V +DL
Sbjct: 298 SNTAATSNQPYKITSITSLQGRGSTTHLLLGLLTIS--PSGGYNLSDPSGTVAIDLDHAK 355
Query: 357 YHP---GLYTENCIVLVEGHYKDQILHVDALGF-------------PPPEASKNSRLYFG 400
P + I+LV+G Y+D++ A G PP + L
Sbjct: 356 GIPANGAWFVPGMILLVDGIYEDEVEDTVARGAGAIGGKFIAISVGGPPCERREISLGID 415
Query: 401 NQNIWGGPSPVSLKSVNRMTKMEKNNE---------------NAMIVILSDVHLDNDKVR 445
+Q+ +P + S + M+ N+ +VI+ +V+LDN K
Sbjct: 416 SQSRGWNIAPTTDPSADPMSAGGDTNQPESRHPSSISRLSSDAQRVVIMGEVNLDNPKTL 475
Query: 446 NNLC 449
L
Sbjct: 476 QALS 479
Score = 41.2 bits (95), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLP-DLVILGDQLNAYTIQNTDCIF 653
++ V++++ QG L + P+ W AL LYPLP LVI + + +T+ C
Sbjct: 687 ARRLVKSILDQGYLSPFAPAVRPILWDYASALHLYPLPTSLVIADPEADPFTVTYEGCHA 746
Query: 654 INP 656
+NP
Sbjct: 747 MNP 749
>gi|260950621|ref|XP_002619607.1| hypothetical protein CLUG_00766 [Clavispora lusitaniae ATCC 42720]
gi|238847179|gb|EEQ36643.1| hypothetical protein CLUG_00766 [Clavispora lusitaniae ATCC 42720]
Length = 670
Score = 47.0 bits (110), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 46/194 (23%), Positives = 80/194 (41%), Gaps = 24/194 (12%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVD-KKRKLCADSDAKSKLFRERYNIIRQRTLR-- 293
E+ F ++ P F +D K+F L KL + D+ F +RYN+ R R
Sbjct: 134 EEYFRFVTPDIQPNFKFDKVRKQFALQPVAGSKLKSTYDSSMSYFSQRYNLTLDRLSRDE 193
Query: 294 ---HSLFNNINPNADSVKLDWVEYLMSLTNV----NHKTVVLGMISQLKENRYFLEDPTG 346
+ F++I S+K + + NV + ++ G++S+ Y LED +
Sbjct: 194 NFHKTSFSSIAALNTSLKKPSGYEITLIKNVLGRDGSRFMLFGLLSKNINGNYILEDTSD 253
Query: 347 IVQLDLSQTSYHPG-LYTENCIVLVEGHYK-------------DQILHVDALGFPPPEAS 392
++L+++Q G Y +V++EG Y HV +G PP E
Sbjct: 254 YIELNMTQAHKTEGSFYCTGMLVIIEGIYSASGGSMSNDASVISGCFHVSNIGHPPAERR 313
Query: 393 KNSRLYFGNQNIWG 406
+ +GN + G
Sbjct: 314 EIGLEVYGNLDFMG 327
Score = 38.9 bits (89), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 2/60 (3%)
Query: 539 LPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 596
+P + + +P N + NP R+ Y SQEI++ R++L+ K RN I F + ++ K
Sbjct: 487 VPNVFVTRLERLLPKGNLILGWNPMRINYISQEIVLFRDDLMDKFKRNDIVFQHDLELEK 546
>gi|322709063|gb|EFZ00640.1| putative DNA directed DNA polymerase II chain B [Metarhizium
anisopliae ARSEF 23]
Length = 756
Score = 46.2 bits (108), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 64/154 (41%), Gaps = 30/154 (19%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN 299
+V++AF+ P+ P L + K+ +FR RY +I QR LR F
Sbjct: 210 LNVVNAFEQPRETTKP------------SLLPPASHKTTVFRNRYQVIHQRLLRSEAFQT 257
Query: 300 IN-------------PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
+ N S+K+ + ++ NH ++LG + L + D TG
Sbjct: 258 SSVSSSRKRALQRSLSNQQSLKITPIANMLGRHGSNH--MLLGQLVILPTGDLAISDLTG 315
Query: 347 IVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
+ LDL Q P + +VLV+G Y+++
Sbjct: 316 TIALDLGQAVAIPQDSAWFCPGMVVLVDGVYEEE 349
>gi|84995438|ref|XP_952441.1| hypothetical protein [Theileria annulata strain Ankara]
gi|65302602|emb|CAI74709.1| hypothetical protein, conserved [Theileria annulata]
Length = 627
Score = 45.4 bits (106), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 6/89 (6%)
Query: 556 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE-----GDISKHFVRTLVSQGTLVS 610
MATNPCR+++ ++++ R +++S + + I D+S V T+V Q L+
Sbjct: 491 MATNPCRIRHWGRKMIFFRHDIMSHLILDSIITTSNYSNSCQDLSDMLVETIVGQSHLLP 550
Query: 611 LPLNLCPVYWSQYGALSLYPLPDLVILGD 639
L V + +L L+ LPDL+ LGD
Sbjct: 551 NKPGLSTV-LNHDSSLLLHSLPDLICLGD 578
>gi|322699970|gb|EFY91728.1| putative DNA directed DNA polymerase II chain B [Metarhizium
acridum CQMa 102]
Length = 759
Score = 45.4 bits (106), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 67/155 (43%), Gaps = 30/155 (19%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDK-KRKLCADSDAKSKLFRERYNIIRQRTLRHSLFN 298
+V++AF+ P +LV+ K L + K+ +FR RY +I QR LR F
Sbjct: 211 LNVVNAFEQP-----------RLVETTKPSLLPPASHKTTVFRNRYQVIHQRLLRSEAFQ 259
Query: 299 NIN-------------PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPT 345
+ N S+K+ + ++ NH ++LG + L + D T
Sbjct: 260 TSSVSSSRKRALQRSLSNQQSLKITPIANMLGRHGSNH--MLLGQLIILPTGDLAISDLT 317
Query: 346 GIVQLDLSQTSYHP---GLYTENCIVLVEGHYKDQ 377
G + LDLS P + +VLV+G Y+++
Sbjct: 318 GTIALDLSHAVAIPEDSAWFCPGMVVLVDGVYEEE 352
>gi|327301821|ref|XP_003235603.1| DNA polymerase epsilon subunit B [Trichophyton rubrum CBS 118892]
gi|326462955|gb|EGD88408.1| DNA polymerase epsilon subunit B [Trichophyton rubrum CBS 118892]
Length = 628
Score = 45.1 bits (105), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 13/149 (8%)
Query: 242 VISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH------- 294
VISAF+ + Y+ + K F+ + L ++ + LFR+RY I +R LR+
Sbjct: 191 VISAFEQQRLTYNMNKKHFESPHEHASLLPPANNRVSLFRDRYYRIHERLLRNETFQTST 250
Query: 295 --SLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLK-ENRYFLEDPTGIVQLD 351
+ F N +A S + + + SL T +L + + Y L DP+G V +D
Sbjct: 251 LPTSFGQSNTSAMSNQPYKITSITSLQGRGSTTHLLLGLLTISPSGSYNLSDPSGTVAID 310
Query: 352 LSQTSYHP---GLYTENCIVLVEGHYKDQ 377
L P + I+LV+G Y+D+
Sbjct: 311 LDHAKGIPANGAWFVPGMILLVDGIYEDE 339
>gi|430813106|emb|CCJ29522.1| unnamed protein product [Pneumocystis jirovecii]
Length = 106
Score = 43.1 bits (100), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 24/76 (31%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Query: 582 CRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-Q 640
C N + +++ VRTL+ Q L L+ P W L LYP+P L+++ D
Sbjct: 3 CNNISDCSSDSQQTQNLVRTLLDQSHLSPFSLSSRPTLWDFDHTLRLYPIPHLMVIADTS 62
Query: 641 LNAYTIQNTDCIFINP 656
+A+ I C+ INP
Sbjct: 63 CHAFHISYCGCLSINP 78
>gi|403221851|dbj|BAM39983.1| uncharacterized protein TOT_020000250 [Theileria orientalis strain
Shintoku]
Length = 616
Score = 42.4 bits (98), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 88/436 (20%), Positives = 183/436 (41%), Gaps = 60/436 (13%)
Query: 247 DIPQFDYDPDLKKFKLVDKKR--KLCADSDAKSKLFRERYNIIRQRTLRHSLFN-----N 299
D+P+ Y +KF KK ++ +D ++ RY ++ +R R FN +
Sbjct: 152 DVPRVYYSVKKQKFLSSFKKEDSEIEPQADLIERICSIRYQLLFERC-RGYNFNEWLGID 210
Query: 300 INPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQT-SYH 358
+ N V +D V + + +++G +++ KE ++ +++ LS+
Sbjct: 211 SHTNIMLVPVDSVSF-----SSKDAQLLIGNLAKSKEGDLCMQGCLVEMKIRLSKDCKIS 265
Query: 359 PGLYTENCIVLVEGHYK--DQILHVDALGFPPPEASKNSRLYFGNQNIWGG-PSPVSLKS 415
G+Y +V+V G D I V +L PP N + N++GG SP+ L
Sbjct: 266 SGIYCYGQVVIVFGTMLPFDNIFAVKSLTHPPLTNKNN----LSHLNLFGGLHSPMELAM 321
Query: 416 VNRMTKMEK-NNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQY 474
+ N ++ VI+SD+HLD R + + + F +V + P +
Sbjct: 322 FKECVNLPSLKNISSKWVIISDLHLD----RASNIQSLEKLFNSYVESYNKEQLPAGFVF 377
Query: 475 CSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIV-PK---------- 523
L + + ++ + S S ++G +++ L+ PK
Sbjct: 378 MGNFSSSGYNFDLHHNWTD--ELDKKANASHADSYSSGFENLFKLLTKPKFIMILTCCYI 435
Query: 524 IYVEGTVTSKVLSPALPK-----FITSEFQGFVPNS--------TMATNPCRVQYCSQEI 570
++V G + + +P+ F + F+ + ++ MA+NPCR+++ +++
Sbjct: 436 VFVPGPKDASLCRQRIPRNPLLSFAINRFKERLESTRPECLGHIIMASNPCRIRHWGRQM 495
Query: 571 LVVREELLSKMCRNCI------KFPEE-GDISKHFVRTLVSQGTLVSLPLNLCPVYWSQY 623
+ R ++++ + + + ++ E D+++ V T++ Q L L +
Sbjct: 496 IFFRHDIMTHLLIDSVVTTSTSEYMESCDDLAEMLVETIIGQSHLSPNKPGLSTI-LEHD 554
Query: 624 GALSLYPLPDLVILGD 639
+L L+PLPD + LGD
Sbjct: 555 SSLLLHPLPDFICLGD 570
>gi|325954771|ref|YP_004238431.1| glycerol-3-phosphate dehydrogenase [Weeksella virosa DSM 16922]
gi|323437389|gb|ADX67853.1| Glycerol-3-phosphate dehydrogenase (NAD(P)(+)) [Weeksella virosa
DSM 16922]
Length = 333
Score = 41.6 bits (96), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 36/62 (58%), Gaps = 1/62 (1%)
Query: 498 PEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMA 557
P++ IS +++ E DIIFL+VP IYVE + ++ P K + S +G VPN +A
Sbjct: 62 PDQFIISTDINEVVFESDIIFLVVPSIYVEKCL-ERLNVPLKDKILVSSIKGIVPNHYLA 120
Query: 558 TN 559
N
Sbjct: 121 VN 122
>gi|429327376|gb|AFZ79136.1| hypothetical protein BEWA_019820 [Babesia equi]
Length = 615
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 12/111 (10%)
Query: 556 MATNPCRVQYCSQEILVVREELLSKM-------CRNCIKFPEEGDISKHFVRTLVSQGTL 608
MATNPCR+++ ++++ R+ELL+++ N + ++ T+V Q L
Sbjct: 480 MATNPCRIRHWGRQMIFYRQELLTQLLWEAIITSSNTLSMDTSENLIDMLTGTIVGQSHL 539
Query: 609 VSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQ----NTDCIFIN 655
+ +L L+PLPD + L D I+ N +C+ N
Sbjct: 540 FPNKPGTSTILQHD-SSLLLHPLPDFICLSDTTAPAFIRIHGHNNNCLIAN 589
>gi|156095689|ref|XP_001613879.1| hypothetical protein [Plasmodium vivax Sal-1]
gi|148802753|gb|EDL44152.1| hypothetical protein, conserved [Plasmodium vivax]
Length = 626
Score = 41.6 bits (96), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 537 PALPKFI------TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI---K 587
P LP +I F N ATNPCR+++ S++++ R ++L+ + +
Sbjct: 467 PILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKKMIFFRHDILNDLIWSSTINAT 526
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPL-NLCPVYWSQYGALSLYPLPDLVILGD----QLN 642
E ++ V T+V Q + +P N +S + L LYPLP + + D
Sbjct: 527 NNERNNLQNILVSTIVGQSHIYPIPHDNRILKRYSPF--LFLYPLPHFICVCDNSCNSFI 584
Query: 643 AYTIQNT-DCIFINPVFHNTVRNAFEVEKEHH 673
+Y ++T DCI N T + F V H
Sbjct: 585 SYASEDTSDCIISNSDMSFTRKKTFTVYSALH 616
>gi|145510887|ref|XP_001441371.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408621|emb|CAK73974.1| unnamed protein product [Paramecium tetraurelia]
Length = 530
Score = 41.2 bits (95), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 50/103 (48%), Gaps = 7/103 (6%)
Query: 558 TNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCP 617
+NPCR+ I++ R ++ ++ +N I+ + G +H T++SQ L + N
Sbjct: 401 SNPCRLSIKGFNIVITRNDISKEIRKNHIQSFQAG--HEHLCETIISQQYLGTFQSNQIC 458
Query: 618 VYWSQYGALSLYPLPDLVIL----GDQLNAYTIQNTDCIFINP 656
W+ A+ L P DLV+L DQ TI N D +NP
Sbjct: 459 YKWNYDFAMLLDPSVDLVVLCDLTADQFKYQTIIN-DTQVMNP 500
>gi|156091481|ref|XP_001612369.1| DNA polymerase epsilon subunit B [Plasmodium vivax Sal-1]
gi|148801171|gb|EDL42576.1| DNA polymerase epsilon subunit B, putative [Plasmodium vivax]
Length = 307
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 537 PALPKFI------TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP- 589
P LP +I F N ATNPCR+++ S++++ R ++L+ + +
Sbjct: 132 PILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKKMIFFRHDILNDLIWSSTINAT 191
Query: 590 --EEGDISKHFVRTLVSQGTLVSLPL-NLCPVYWSQYGALSLYPLPDLVILGD----QLN 642
E ++ V T+V Q + +P N +S + L LYPLP + + D
Sbjct: 192 NNERNNLQNILVSTIVGQSHIYPIPHDNRILKRYSPF--LFLYPLPHFICVCDNSCNSFI 249
Query: 643 AYTIQNT-DCIFINPVFHNTVRNAFEVEKEHH 673
+Y ++T DCI N T + F V H
Sbjct: 250 SYASEDTSDCIISNSDMSFTRKKTFTVYSALH 281
>gi|156091209|ref|XP_001612355.1| DNA polymerase epsilon subunit B [Plasmodium vivax Sal-1]
gi|148801157|gb|EDL42562.1| DNA polymerase epsilon subunit B [Plasmodium vivax]
Length = 306
Score = 40.8 bits (94), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 537 PALPKFI------TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI---K 587
P LP +I F N ATNPCR+++ S++++ R ++L+ + +
Sbjct: 131 PILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKKMIFFRHDILNDLIWSSTINAT 190
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPL-NLCPVYWSQYGALSLYPLPDLVILGD----QLN 642
E ++ V T+V Q + +P N +S + L LYPLP + + D
Sbjct: 191 NNERNNLQNILVSTIVGQSHIYPIPHDNRILKRYSPF--LFLYPLPHFICVCDNSCNSFI 248
Query: 643 AYTIQNT-DCIFINPVFHNTVRNAFEVEKEHH 673
+Y ++T DCI N T + F V H
Sbjct: 249 SYASEDTSDCIISNSDMSFTRKKTFTVYSALH 280
>gi|94502266|ref|ZP_01308749.1| DNA-directed RNA polymerase beta chain [Candidatus Sulcia muelleri
str. Hc (Homalodisca coagulata)]
gi|94451173|gb|EAT14115.1| DNA-directed RNA polymerase beta chain [Candidatus Sulcia muelleri
str. Hc (Homalodisca coagulata)]
Length = 951
Score = 40.8 bits (94), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 35/253 (13%)
Query: 472 VQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVT 531
V Y + V ++ + + I F E D ++ + +N + + L+ PK + GT
Sbjct: 471 VNYKKINYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGL 530
Query: 532 SKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR----NCIK 587
K L+ + I +E G V ++ N +V+Y + E +E+LLS R IK
Sbjct: 531 EKHLAQYVNALIYAEGDGIV--ESVDANNIKVKYFNSE----KEKLLSFEKRIKTYKLIK 584
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSL-------------YPLPDL 634
F + + +R +V +G V+ LC + +Q G L+L Y D
Sbjct: 585 FRKTNQNTCLNIRPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDA 644
Query: 635 VILGDQ-----------LNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQ 683
+++ ++ ++ Y+++ D F + N F E + G+ I
Sbjct: 645 IVISEKVVREDWFTSIHIDEYSLEVRDTKLGMEEFTFDIPN-FNEENKKKLDKYGIIKIG 703
Query: 684 SSFKPEVIYVGEL 696
S KP + +G +
Sbjct: 704 SEVKPGDVLIGRI 716
>gi|156091695|ref|XP_001612379.1| DNA polymerase epsilon subunit B [Plasmodium vivax Sal-1]
gi|148801181|gb|EDL42586.1| DNA polymerase epsilon subunit B, putative [Plasmodium vivax]
Length = 338
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 537 PALPKFI------TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCI---K 587
P LP +I F N ATNPCR+++ S++++ R ++L+ + +
Sbjct: 132 PILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKKMIFFRHDILNDLIWSSTINAT 191
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPL-NLCPVYWSQYGALSLYPLPDLVILGD----QLN 642
E ++ V T+V Q + +P N +S + L LYPLP + + D
Sbjct: 192 NNERNNLQNILVSTIVGQSHIYPIPHDNRILKRYSPF--LFLYPLPHFICVCDNSCNSFI 249
Query: 643 AYTIQNT-DCIFINPVFHNTVRNAFEVEKEHH 673
+Y ++T DCI N T + F V H
Sbjct: 250 SYASEDTSDCIISNSDMSFTRKKTFTVYSALH 281
>gi|237844331|ref|XP_002371463.1| DNA polymerase epsilon subunit, putative [Toxoplasma gondii ME49]
gi|211969127|gb|EEB04323.1| DNA polymerase epsilon subunit, putative [Toxoplasma gondii ME49]
gi|221481260|gb|EEE19657.1| DNA polymerase epsilon subunit B, putative [Toxoplasma gondii GT1]
Length = 864
Score = 40.8 bits (94), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 99/261 (37%), Gaps = 41/261 (15%)
Query: 182 VPTDVQGPVTAF--ETYHNLVPLIL---HPVIPVSNREQNNIMNWLKLSSECCRTEINSE 236
VP + V F ET H +P P+ P + ++ W + E +
Sbjct: 201 VPVRIHWAVVDFVVETVHRSLPRFFSLSRPLPPPEVLMEAALLGWRRRERSRREDEARRK 260
Query: 237 ------EQIFSVISAFDIPQFDYDPDLKKFK--------LVDKKRKLCADSDAKSKLFRE 282
++IF + D+ +F +D ++F+ L R C DS + +F
Sbjct: 261 LARCRGKKIFLHSAMTDVHEFSFDTTKQRFQTTPLKPLTLASLGRVFC-DSSVFASMFDR 319
Query: 283 RYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSL-TNVNHKTVVL---GMISQLKENR 338
RY +++QR L H L + +A ++ + TN K VV G+ + + +
Sbjct: 320 RYYVLQQRCLLHPLLSLHGRSASEGRVQAPGFQSDADTNAAVKRVVFEVDGVARRAGQRQ 379
Query: 339 YFLEDPTGIVQLDLS--------------QTSYHPGLYTENCIVLVEGHYK--DQILHVD 382
L V DL+ + PG + E +VL +G + D HV
Sbjct: 380 LLLAILGRDVNKDLALQGLFSDIRIKFEKEFRPRPGFFLEGHVVLADGFFTKHDDCFHVI 439
Query: 383 ALGFPPPEASKNSRLYFGNQN 403
L PP S + RL FG ++
Sbjct: 440 DLSHPPRWPSSD-RLLFGQRS 459
>gi|221501938|gb|EEE27689.1| DNA polymerase epsilon subunit B, putative [Toxoplasma gondii VEG]
Length = 864
Score = 40.4 bits (93), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 98/261 (37%), Gaps = 41/261 (15%)
Query: 182 VPTDVQGPVTAF--ETYHNLVPLIL---HPVIPVSNREQNNIMNWLKLSSECCRTEINSE 236
VP + V F ET H +P P+ P + ++ W + E +
Sbjct: 201 VPVRIHWAVVDFVVETVHQSLPRFFSLSRPLPPPEVLMEAALLGWRRRERSRREDEARRK 260
Query: 237 ------EQIFSVISAFDIPQFDYDPDLKKFK--------LVDKKRKLCADSDAKSKLFRE 282
++IF + D+ F +D ++F+ L R C DS + +F
Sbjct: 261 LARCRGKKIFLHSAMTDVHDFSFDTTKQRFQTTPLKPLTLASLGRVFC-DSSVFASMFDR 319
Query: 283 RYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSL-TNVNHKTVVL---GMISQLKENR 338
RY +++QR L H L + +A ++ + TN K VV G+ + + +
Sbjct: 320 RYYVLQQRCLLHPLLSLHGRSASEGRVQAPGFQSDADTNAAGKRVVFEVDGVARRAGQRQ 379
Query: 339 YFLEDPTGIVQLDLS--------------QTSYHPGLYTENCIVLVEGHYK--DQILHVD 382
L V DL+ + PG + E +VL +G + D HV
Sbjct: 380 LLLAILGRDVNKDLALQGLFSDIRIKFEKEFRPRPGFFLEGHVVLADGFFTKHDDCFHVI 439
Query: 383 ALGFPPPEASKNSRLYFGNQN 403
L PP S + RL FG ++
Sbjct: 440 DLSHPPRWPSSD-RLLFGQRS 459
>gi|156091201|ref|XP_001612353.1| DNA polymerase epsilon subunit B, truncated [Plasmodium vivax
Sal-1]
gi|148801155|gb|EDL42560.1| DNA polymerase epsilon subunit B, truncated, putative [Plasmodium
vivax]
Length = 275
Score = 40.4 bits (93), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 66/152 (43%), Gaps = 17/152 (11%)
Query: 537 PALPKFI------TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP- 589
P LP +I F N ATNPCR+++ S++++ R ++L+ + +
Sbjct: 100 PILPYYIRKFKQNIESFFSSKRNIIFATNPCRIRHLSKKMIFFRHDILNDLIWSSTINAT 159
Query: 590 --EEGDISKHFVRTLVSQGTLVSLPL-NLCPVYWSQYGALSLYPLPDLVILGD----QLN 642
E ++ V T+V Q + +P N +S + L LYPLP + + D
Sbjct: 160 NNERNNLQNILVSTIVGQSHIYPIPHDNRILKRYSPF--LFLYPLPHFICVCDNSCNSFI 217
Query: 643 AYTIQNT-DCIFINPVFHNTVRNAFEVEKEHH 673
+Y ++T DCI N T + F V H
Sbjct: 218 SYASEDTSDCIISNSDMSFTRKKTFTVYSALH 249
>gi|161833684|ref|YP_001597880.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia
muelleri GWSS]
gi|182676574|sp|A8Z5T3.1|RPOB_SULMW RecName: Full=DNA-directed RNA polymerase subunit beta; Short=RNAP
subunit beta; AltName: Full=RNA polymerase subunit beta;
AltName: Full=Transcriptase subunit beta
gi|152206174|gb|ABS30484.1| DNA-directed RNA polymerase beta subunit [Candidatus Sulcia
muelleri GWSS]
Length = 1328
Score = 40.4 bits (93), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 35/253 (13%)
Query: 472 VQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVT 531
V Y + V ++ + + I F E D ++ + +N + + L+ PK + GT
Sbjct: 616 VNYKKINYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGL 675
Query: 532 SKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR----NCIK 587
K L+ + I +E G V ++ N +V+Y + E +E+LLS R IK
Sbjct: 676 EKHLAQYVNALIYAEGDGIV--ESVDANNIKVKYFNSE----KEKLLSFEKRIKTYKLIK 729
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSL-------------YPLPDL 634
F + + +R +V +G V+ LC + +Q G L+L Y D
Sbjct: 730 FRKTNQNTCLNIRPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDA 789
Query: 635 VILGDQ-----------LNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQ 683
+++ ++ ++ Y+++ D F + N F E + G+ I
Sbjct: 790 IVISEKVVREDWFTSIHIDEYSLEVRDTKLGMEEFTFDIPN-FNEENKKKLDKYGIIKIG 848
Query: 684 SSFKPEVIYVGEL 696
S KP + +G +
Sbjct: 849 SEVKPGDVLIGRI 861
>gi|393912267|gb|EFO20452.2| hypothetical protein LOAG_08035 [Loa loa]
Length = 177
Score = 40.4 bits (93), Expect = 3.7, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 8 PSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADS 67
P +++ EC + +E + VI F +P+ YD K +VD + + S
Sbjct: 64 PVLSFNEFRSAVTECVSNHSSKQESLIHVIDLFTVPRLRYDEQRKVLVVVDGQASVVGQS 123
Query: 68 DAKSKLFRERYNIIRQ 83
L+RER ++ Q
Sbjct: 124 ADARNLYRERLKLVVQ 139
>gi|293977795|ref|YP_003543225.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia
muelleri DMIN]
gi|292667726|gb|ADE35361.1| DNA-directed RNA polymerase subunit beta [Candidatus Sulcia
muelleri DMIN]
Length = 1331
Score = 40.0 bits (92), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 35/253 (13%)
Query: 472 VQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVT 531
V Y + V ++ + + I F E D ++ + +N + + L+ PK + GT
Sbjct: 613 VNYKKINYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGL 672
Query: 532 SKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR----NCIK 587
K L+ + I +E G V ++ N +V+Y + E +E+LLS R IK
Sbjct: 673 EKHLAQYVNALIYAEGDGIV--ESVDANNIKVKYFNSE----KEKLLSFEKRIKTYKLIK 726
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSL-------------YPLPDL 634
F + + +R +V +G V+ LC + +Q G L+L Y D
Sbjct: 727 FRKTNQNTCINIRPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDA 786
Query: 635 VILGDQ-----------LNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQ 683
+++ ++ ++ Y+++ D F + N F E + G+ I
Sbjct: 787 IVISEKVVREDWFTSIHIDEYSLEVRDTKLGMEEFTFDIPN-FNEENKKKLDKYGIIKIG 845
Query: 684 SSFKPEVIYVGEL 696
S KP + +G +
Sbjct: 846 SEVKPGDVLIGRI 858
>gi|312082850|ref|XP_003143615.1| hypothetical protein LOAG_08035 [Loa loa]
Length = 161
Score = 40.0 bits (92), Expect = 4.2, Method: Composition-based stats.
Identities = 19/76 (25%), Positives = 33/76 (43%)
Query: 8 PSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADS 67
P +++ EC + +E + VI F +P+ YD K +VD + + S
Sbjct: 64 PVLSFNEFRSAVTECVSNHSSKQESLIHVIDLFTVPRLRYDEQRKVLVVVDGQASVVGQS 123
Query: 68 DAKSKLFRERYNIIRQ 83
L+RER ++ Q
Sbjct: 124 ADARNLYRERLKLVVQ 139
>gi|209880952|ref|XP_002141915.1| DNA polymerase epsilon subunit B family protein [Cryptosporidium
muris RN66]
gi|209557521|gb|EEA07566.1| DNA polymerase epsilon subunit B family protein [Cryptosporidium
muris RN66]
Length = 542
Score = 39.3 bits (90), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 62/147 (42%), Gaps = 38/147 (25%)
Query: 283 RYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMS------------------------- 317
RY +IR ++H F NP+ D K + ++Y+ +
Sbjct: 60 RYYVIRNSLVQHKSFCIFNPD-DQYKREVIKYVYNESDNSINMDDIDQKLMPISIESSRF 118
Query: 318 -------LTNVNHKTVVLGMISQLKENRYFLEDPTGIVQL--DLSQTSYHPGLYTENCIV 368
L N LGM+++ +EN +LED +++L D + T + PG+Y + IV
Sbjct: 119 IIHSIKQLHGTNGNVTCLGMLNRDEENHLYLEDTNCLIRLKIDTNVTLFGPGIYCCDHIV 178
Query: 369 LVEGHYKDQI--LHVDALGFPPPEASK 393
+ G Y D+I V F PP SK
Sbjct: 179 VTHG-YLDKISNFFVVKYMFHPPYFSK 204
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,153,042,788
Number of Sequences: 23463169
Number of extensions: 465918100
Number of successful extensions: 1021939
Number of sequences better than 100.0: 410
Number of HSP's better than 100.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 76
Number of HSP's that attempted gapping in prelim test: 1019614
Number of HSP's gapped (non-prelim): 1180
length of query: 707
length of database: 8,064,228,071
effective HSP length: 150
effective length of query: 557
effective length of database: 8,839,720,017
effective search space: 4923724049469
effective search space used: 4923724049469
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 81 (35.8 bits)