BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy2623
(707 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5ZKQ6|DPOE2_CHICK DNA polymerase epsilon subunit 2 OS=Gallus gallus GN=POLE2 PE=2
SV=1
Length = 527
Score = 340 bits (872), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 187/445 (42%), Positives = 272/445 (61%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAKSKLFRE 282
EC + + + +F++I AFDIP++ Y+PD K+F + L + K++LFRE
Sbjct: 73 ECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY+I++QRT RH LF I+P N +L VE L+ T + +VLGMI+QLKE
Sbjct: 133 RYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+YFLEDPTG+VQLDLS+ +H GLYTE+C VL EG Y+D++ HV+A GFPP E S +R
Sbjct: 193 GKYFLEDPTGVVQLDLSKAQFHSGLYTESCFVLAEGWYEDEVFHVNAFGFPPTEPSATTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
++GN N +GGPS S+K+ ++ ++E NE+AM V LSDV LD +V E + + F
Sbjct: 253 AFYGNINFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDVWLDQAEV----LEKLHTMF 308
Query: 457 QGF--VPNST--MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y +I ++ L + C ++P S H S
Sbjct: 309 SGYSSAPPTCFFFCGNFSSAPYGKNQIQSLKGSLKALADIIC-EYP-----SIHKSSR-- 360
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+F+ P+ G+V + P L + IT EF+ VP S TNPCRVQYC+QEI++
Sbjct: 361 ---FVFVPGPEDPGPGSVLPR---PPLAENITQEFRQLVPFSVFTTNPCRVQYCTQEIII 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PD++++ D+ + +T+ NTDC+ INP
Sbjct: 475 PDMLVIADKYDPFTVTNTDCLCINP 499
Score = 80.9 bits (198), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 48/127 (37%), Positives = 72/127 (56%), Gaps = 10/127 (7%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKR----KLCADSDAK 70
+E EC + + + +F++I AFDIP++ Y+PD K+F + L + K
Sbjct: 67 VEAAVQECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDK 126
Query: 71 SKLFRERYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY+I++QRT RH LF I+P N +L VE L+ T + +VLGM
Sbjct: 127 AELFRERYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGM 186
Query: 125 ISQLKEN 131
I+QLKE
Sbjct: 187 ITQLKEG 193
>sp|O54956|DPOE2_MOUSE DNA polymerase epsilon subunit 2 OS=Mus musculus GN=Pole2 PE=2 SV=2
Length = 527
Score = 333 bits (853), Expect = 4e-90, Method: Compositional matrix adjust.
Identities = 180/457 (39%), Positives = 266/457 (58%), Gaps = 33/457 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L + K++L+ E
Sbjct: 73 ECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +++ + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ H +A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHANAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM VI+SDV LD +V E F
Sbjct: 253 AYYGNINFFGGPSNASVKTYTKLRQLEDENKDAMFVIVSDVWLDQVQV----LEKFHVMF 308
Query: 457 QGFVPNS----TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L S C ++P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKSLADIIC-EYPSIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT EF+ VP S TNPCR+QYC+QEI++
Sbjct: 368 EDPGFGSILPR-------------PPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIII 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPV+W+ L +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSSLDIPTHFVKTILSQGHLAPLPLYVCPVHWAYDYTLRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
PDL+++ D+ + +T+ NTDC+ INP AF+V
Sbjct: 475 PDLLVIADKYDPFTVTNTDCLCINPGSFPRSGFAFKV 511
Score = 75.9 bits (185), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/128 (33%), Positives = 70/128 (54%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVD----KKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+ ERY I+ QRT RH LF +++ + +L +E L+ T+ +VLG
Sbjct: 126 KAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>sp|A7YWS7|DPOE2_BOVIN DNA polymerase epsilon subunit 2 OS=Bos taurus GN=POLE2 PE=2 SV=1
Length = 527
Score = 332 bits (852), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 178/445 (40%), Positives = 265/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + + IF++I AFDIP+F Y+ + KKF + L + K++LFRE
Sbjct: 73 ECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG +QLDLS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V E + F
Sbjct: 253 AYYGNTNFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LEKLHIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C +P S+ V
Sbjct: 309 SGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-GYPNIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 368 EDPGFGSILPR-------------PPFAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCINP 499
Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 45/128 (35%), Positives = 71/128 (55%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + + IF++I AFDIP+F Y+ + KKF + L +
Sbjct: 66 VVEAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF ++ + + +L +E L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>sp|P56282|DPOE2_HUMAN DNA polymerase epsilon subunit 2 OS=Homo sapiens GN=POLE2 PE=1 SV=2
Length = 527
Score = 330 bits (847), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 179/445 (40%), Positives = 263/445 (59%), Gaps = 33/445 (7%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDAKSKLFRE 282
EC ++ + E +F++I AFDIP+F Y+ + KKF + L K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF ++ + + +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V E + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEV----LEKLRIMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P+ S+ V
Sbjct: 309 AGYSPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYPDIHQSSRFVFVPGP 367
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
E I+P+ P L + IT+EF+ VP S TNPCR+QYC+QEI V
Sbjct: 368 EDPGFGSILPR-------------PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTTTNTECLCINP 499
Score = 76.3 bits (186), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 44/128 (34%), Positives = 69/128 (53%), Gaps = 10/128 (7%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV----DKKRKLCADSDA 69
++E EC ++ + E +F++I AFDIP+F Y+ + KKF + L
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF ++ + + +L +E L+ T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 185
Query: 124 MISQLKEN 131
MI+QLKE
Sbjct: 186 MITQLKEG 193
>sp|Q54Y85|DPOE2_DICDI DNA polymerase epsilon subunit 2 OS=Dictyostelium discoideum
GN=pole2 PE=3 SV=1
Length = 676
Score = 191 bits (484), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 130/431 (30%), Positives = 224/431 (51%), Gaps = 29/431 (6%)
Query: 236 EEQIFSVISAFDIPQFDYDPDLKKF-KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 294
E++ VI AF+ P F++D + K+F K + R L S++KS L+R+RY + QRT R+
Sbjct: 76 EKEALKVIDAFNTPLFNFDSNSKQFIKSENFDRSLHGSSNSKSDLYRKRYLKVLQRTERN 135
Query: 295 SLFNNINPNADSVKLDW--VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDL 352
F+ +D +K ++ + L SL + VLG ISQ++E+++++ED V++D+
Sbjct: 136 DYFSTPVLASDKLKNEYQTITPLSSLLGNTGRKHVLGTISQIEEDQFYIEDLNTNVKIDI 195
Query: 353 SQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVS 412
S+ + G+ T N I+ G + D + D + PP E + + N +++G
Sbjct: 196 SKAKFEFGIVTINSIIQASGEFIDGVFIADKIQLPPTEERCETLKFLQNIDMFG--ERPQ 253
Query: 413 LKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRV 472
K++ ++ K EK E+ I+ LSDV LD+++V L +++ ++ P + +
Sbjct: 254 KKTMEQLIKYEKEKEDNSILFLSDVWLDSERVMERL-DYLFGGYKDCPPFAMILMGNFTE 312
Query: 473 QYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTS 532
++ +++ K+P ++ F+ VP T +
Sbjct: 313 HPLINGTQYQLKKYFNQLAMVIQKYPNIHQFTQ------------FIFVPG----PTDPT 356
Query: 533 KVLSPALPKFITS-----EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK 587
L LPKF S +F +P ST TNPCR++YCSQEI++ R++L +KM R+CI
Sbjct: 357 GSLLNILPKFPISNVFIKDFISLIPKSTFTTNPCRIRYCSQEIIIFRDDLTNKMRRHCIL 416
Query: 588 FPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTI 646
P + DIS+H + + S L +L L P+YW+ A+S+YPLPDL+++GD+ N Y
Sbjct: 417 EPSQSCDISQHLIELICSNSHLCNLTLEDKPIYWNYDHAMSVYPLPDLLVIGDKSNQYEH 476
Query: 647 QNTDCIF-INP 656
D + +NP
Sbjct: 477 SRADGTYSMNP 487
Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 37/105 (35%), Positives = 61/105 (58%), Gaps = 3/105 (2%)
Query: 30 EEQIFSVISAFDIPQFDYDPDLKKF-KLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRH 88
E++ VI AF+ P F++D + K+F K + R L S++KS L+R+RY + QRT R+
Sbjct: 76 EKEALKVIDAFNTPLFNFDSNSKQFIKSENFDRSLHGSSNSKSDLYRKRYLKVLQRTERN 135
Query: 89 SLFNNINPNADSVKLDW--VEYLMSLTNVNHKTVVLGMISQLKEN 131
F+ +D +K ++ + L SL + VLG ISQ++E+
Sbjct: 136 DYFSTPVLASDKLKNEYQTITPLSSLLGNTGRKHVLGTISQIEED 180
>sp|Q19196|DPOE2_CAEEL Probable DNA polymerase epsilon subunit 2 OS=Caenorhabditis elegans
GN=pole-2 PE=3 SV=2
Length = 534
Score = 182 bits (462), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 129/436 (29%), Positives = 215/436 (49%), Gaps = 30/436 (6%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNI 286
+C ++ +V AF + +D+D DL+K L +K L ADS + S R+R+ I
Sbjct: 77 QCKSKGTQDAGKLLNVFDAFSLQPYDFDADLRKMVLRKEKTSLAADSSSFSHAARQRFFI 136
Query: 287 IRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
++QR +R + N K E L S T VVLGM++Q K + Y +ED +G
Sbjct: 137 VKQRAMRCASLKNF-------KFTTCEILGSSTKHLQSVVVLGMLTQQKADCYHIEDLSG 189
Query: 347 IVQLDLSQ-TSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG-NQNI 404
V+++ + T +H L+ E+ I + EG +++ +L V+ + P E+++ +R N+N
Sbjct: 190 SVEVEFKEDTKFHHALFHEHSIAIFEGTFENSVLTVNEVAMVPVESAEVTRKELSSNENW 249
Query: 405 WGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNST 464
+GG ++ + +R+ E+ +V LSDV LD+ KV + + + QG+
Sbjct: 250 FGGDDKIAFRCSDRLRSALAKQEDTSLVFLSDVFLDDKKVMKAVFKLL----QGYKDQPP 305
Query: 465 MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKI 524
+A C +CS+ +LL + R + + K+ + IF+ P
Sbjct: 306 VAIVFCG-NFCSRPRQTDTIDLLDRGFRWL------ANQLTPLRKDYEKTQFIFVPGPDD 358
Query: 525 YVEGTVTSKVLSPALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMC 582
TV + P LP + F+ P + T A+NPCR+Q+ SQEI+V R +L+ K C
Sbjct: 359 PFVDTVLPR---PHLPSLL---FKHISPIISCTFASNPCRIQFASQEIVVFRSDLIKKTC 412
Query: 583 RNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN 642
R+ I I + R+++SQ L LP ++ PV +LSL+PLPDL+I D+
Sbjct: 413 RHSINSITVESIPSRYARSVLSQAHLCPLPQHITPVLPDFSHSLSLHPLPDLLITADRFE 472
Query: 643 AYT--IQNTDCIFINP 656
+T + D I NP
Sbjct: 473 TFTEKVVGADTIVSNP 488
Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 58/119 (48%), Gaps = 7/119 (5%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 72
+LI T +C ++ +V AF + +D+D DL+K L +K L ADS + S
Sbjct: 69 ELIRDTFRQCKSKGTQDAGKLLNVFDAFSLQPYDFDADLRKMVLRKEKTSLAADSSSFSH 128
Query: 73 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKEN 131
R+R+ I++QR +R + N K E L S T VVLGM++Q K +
Sbjct: 129 AARQRFFIVKQRAMRCASLKNF-------KFTTCEILGSSTKHLQSVVVLGMLTQQKAD 180
>sp|P0CN24|DPB2_CRYNJ DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var.
neoformans serotype D (strain JEC21 / ATCC MYA-565)
GN=DPB2 PE=3 SV=1
Length = 541
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 129/438 (29%), Positives = 208/438 (47%), Gaps = 32/438 (7%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+E+N E FSV+ +FD+P YDP F + + + ++S RER+ II++
Sbjct: 90 SEVNVESH-FSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRSAFLRERWAIIKEI 148
Query: 291 TLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
LR+ F + A+ +KL + L L ++ GM+++ +E + LED
Sbjct: 149 ILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLFGMLARNEEGKLCLEDGES 206
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIW 405
V LD+ GL+TE C+VL+EG Y ++ + V A+G PP E +R G+ +
Sbjct: 207 RVVLDMEDAVPGEGLFTEGCMVLIEGEYTVEETVRVLAMGHPPSERRNIARSLHGHVDFL 266
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI-----TSEFQGFV 460
GG + VSLK + N VILSDV LD+ + L + T+E++ V
Sbjct: 267 GGGA-VSLKEEQKYNPTVLANTQISFVILSDVWLDHPRTMPALRQMFEGYANTAEYRPMV 325
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLI 520
+ N C+ + QE L + + P H S F+
Sbjct: 326 --FVLCGNFCQGGWEGQEGLKRYSRGFNSLAELLQSIP-----LLHSSH--------FVF 370
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
VP + T+ + P+LP T+ +PN+ +NPCR++Y EI++ RE+L+ K
Sbjct: 371 VPGPSDPWSSTT-LPRPSLPSAFTTRLSNRIPNARFVSNPCRLKYFGMEIVICREDLMGK 429
Query: 581 MCRN--CIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILG 638
M RN +K EE ++ ++ V+T++ Q L LP+++ P W AL LYP+P V+L
Sbjct: 430 MMRNLVVVKEGEEMNMKRYLVQTILDQAHLSPLPISVRPTLWEYDHALRLYPMPSAVVLA 489
Query: 639 DQLNAYTIQNTDCIFINP 656
D+ Y + C NP
Sbjct: 490 DKYERYELTYEGCHVFNP 507
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 11 TYDLIEFTTNECCR----TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
Y+ ++ T E + +E+N E FSV+ +FD+P YDP F + +
Sbjct: 72 AYENLQLGTTEDTQVADPSEVNVESH-FSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQ 130
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVL 122
+ ++S RER+ II++ LR+ F + A+ +KL + L L ++
Sbjct: 131 ASSRSAFLRERWAIIKEIILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLF 188
Query: 123 GMISQLKEN 131
GM+++ +E
Sbjct: 189 GMLARNEEG 197
>sp|P0CN25|DPB2_CRYNB DNA polymerase epsilon subunit B OS=Cryptococcus neoformans var.
neoformans serotype D (strain B-3501A) GN=DPB2 PE=3 SV=1
Length = 541
Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 129/438 (29%), Positives = 208/438 (47%), Gaps = 32/438 (7%)
Query: 231 TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQR 290
+E+N E FSV+ +FD+P YDP F + + + ++S RER+ II++
Sbjct: 90 SEVNVESH-FSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQASSRSAFLRERWAIIKEI 148
Query: 291 TLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
LR+ F + A+ +KL + L L ++ GM+++ +E + LED
Sbjct: 149 ILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLFGMLARNEEGKLCLEDGES 206
Query: 347 IVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIW 405
V LD+ GL+TE C+VL+EG Y ++ + V A+G PP E +R G+ +
Sbjct: 207 RVVLDMEDAVPGEGLFTEGCMVLIEGEYTVEETVRVLAMGHPPSERRNIARSLHGHVDFL 266
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFI-----TSEFQGFV 460
GG + VSLK + N VILSDV LD+ + L + T+E++ V
Sbjct: 267 GGGA-VSLKEEQKYNPTVLANTQISFVILSDVWLDHPRTMPALRQMFEGYANTAEYRPMV 325
Query: 461 PNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLI 520
+ N C+ + QE L + + P H S F+
Sbjct: 326 --FVLCGNFCQGGWEGQEGLKRYSRGFNSLAELLQSIP-----LLHSSH--------FVF 370
Query: 521 VPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSK 580
VP + T+ + P+LP T+ +PN+ +NPCR++Y EI++ RE+L+ K
Sbjct: 371 VPGPSDPWSSTT-LPRPSLPSAFTTRLSNRIPNARFVSNPCRLKYFGMEIVICREDLMGK 429
Query: 581 MCRN--CIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILG 638
M RN +K EE ++ ++ V+T++ Q L LP+++ P W AL LYP+P V+L
Sbjct: 430 MMRNLVVVKEGEEMNMKRYLVQTILDQAHLSPLPISVRPTLWEYDHALRLYPMPSAVVLA 489
Query: 639 DQLNAYTIQNTDCIFINP 656
D+ Y + C NP
Sbjct: 490 DKYERYELTYEGCHVFNP 507
Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 33/129 (25%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 11 TYDLIEFTTNECCR----TEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCAD 66
Y+ ++ T E + +E+N E FSV+ +FD+P YDP F + +
Sbjct: 72 AYENLQLGTTEDTQVADPSEVNVESH-FSVVDSFDMPAMRYDPVRSGFVQSKAQPSVAGQ 130
Query: 67 SDAKSKLFRERYNIIRQRTLRHSLFN----NINPNADSVKLDWVEYLMSLTNVNHKTVVL 122
+ ++S RER+ II++ LR+ F + A+ +KL + L L ++
Sbjct: 131 ASSRSAFLRERWAIIKEIILRNENFTPPAIGGHDRANYLKLTSIRNL--LGRAGQLFLLF 188
Query: 123 GMISQLKEN 131
GM+++ +E
Sbjct: 189 GMLARNEEG 197
>sp|O94263|DPB2_SCHPO DNA polymerase epsilon subunit B OS=Schizosaccharomyces pombe
(strain 972 / ATCC 24843) GN=dpb2 PE=1 SV=1
Length = 594
Score = 127 bits (319), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 120/476 (25%), Positives = 202/476 (42%), Gaps = 66/476 (13%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 296
E+ F V+ AF +P+F YD K F L + L A + A + + R+N++ R LR+
Sbjct: 136 EKYFRVLDAFKMPKFKYDSSRKVFVLSKQSPTLMASASACTDMLNRRFNVVYSRILRNES 195
Query: 297 FNNIN-----PNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
F + + +L + L L + ++ G+++ + +LED VQLD
Sbjct: 196 FQTPSFSGSFSQTGTYQLTPIRNL--LGRAGNTFLLFGLLTIAPDGTLWLEDLDSQVQLD 253
Query: 352 LSQTSYHPGLYTENCIVLVEGHY-KDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSP 410
+SQ GL+ C+VLV G + + V LG PP E S N +I G
Sbjct: 254 VSQAEQGFGLFCPGCLVLVNGQFLSSGLFLVFELGHPPIERRDASLKALNNLDILG--LN 311
Query: 411 VSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCE-FITSEFQGFVP-------- 461
+ K + + E+ ++ V +S+VHLDN + L + F E VP
Sbjct: 312 MDAKQLALLRHAEQAYQSQAFVCISEVHLDNHQTFYALEKIFQKYESSEAVPFCIILCGS 371
Query: 462 --NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFL 519
+S + +QY +E +K+ + KFP+ + +K F+
Sbjct: 372 FMSSAFHNSGSSIQY---------KEGFNKLAASLEKFPKICEKTK------------FI 410
Query: 520 IVPKIYVEGTVTSKVLSP--ALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREEL 577
VP T L P ++P + Q ++ A+NPCR+ + SQE+L+ R+++
Sbjct: 411 FVPGPNDPWTTNGISLMPKHSIPLHFVNRIQRVCKHTIFASNPCRIIFFSQEVLIYRDDI 470
Query: 578 LSKMCRNCIKF----------------PEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWS 621
+ RN +KF ++ + V+T++ Q L P P+ W
Sbjct: 471 SGRFQRNSLKFGKTPQGTSNINSIPLAEQQVHQQRKLVKTVLDQSHLSPFPSRTRPILWD 530
Query: 622 QYGALSLYPLPDLVILGD-QLNAYTIQNTDCIFINP-----VFHNTVRNAFEVEKE 671
ALS++PLP + L D + +A+ + C NP H + F V+KE
Sbjct: 531 FDYALSVFPLPSCMGLIDSESSAFDVHYGGCPTFNPGALLLGVHYNWQEVFPVKKE 586
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 33/61 (54%)
Query: 31 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 90
E+ F V+ AF +P+F YD K F L + L A + A + + R+N++ R LR+
Sbjct: 136 EKYFRVLDAFKMPKFKYDSSRKVFVLSKQSPTLMASASACTDMLNRRFNVVYSRILRNES 195
Query: 91 F 91
F
Sbjct: 196 F 196
>sp|Q6FSK8|DPB2_CANGA DNA polymerase epsilon subunit B OS=Candida glabrata (strain ATCC
2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65)
GN=DPB2 PE=3 SV=1
Length = 719
Score = 98.6 bits (244), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 126/532 (23%), Positives = 209/532 (39%), Gaps = 119/532 (22%)
Query: 216 NNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA---- 271
N I+NW F +I+ D +F Y+P ++ K +L +
Sbjct: 188 NRILNW---------------RDYFRIINTTDQKKFSYNPVKRQIFYQPPKDQLKSVLKI 232
Query: 272 -DSDAKSKLFRERYNIIRQRTLRHSLF----NNINPNADSVKL---------DWVEYLMS 317
++ AK+ LFR RY + R R LR+ F + NP + ++L D +S
Sbjct: 233 PNAQAKTDLFRTRYFLTRDRLLRNESFQSSHDTFNPLSSMIQLKNNINNNNQDDTPTGLS 292
Query: 318 LTNV-------NHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVL 369
+T + ++LG++ + ++ LED +G + +D+SQT PGL Y IVL
Sbjct: 293 ITQIKNLLGRDGQNFLILGVLKMNPKGQWSLEDASGSIDIDISQTLPSPGLFYIPGAIVL 352
Query: 370 VEGHYK--DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK------ 421
EG Y V ++ FPP E + + GN ++ G + R+
Sbjct: 353 AEGIYYTVGHTFAVTSMTFPPGERRDKTLDHIGNLDLLGIHGTEKSSYIPRLDNEIKIRL 412
Query: 422 --MEKNNENAMIVIL-SDVHLDNDKVRNNLCEFITSEFQG----FVPNSTMATNPCRVQY 474
+E++ + V+L D+ LD+ V + L + T Q V + ++ P
Sbjct: 413 HLLEQDLTHQKFVLLGGDLFLDDQHVMDGLKKVFTKLDQEAPTVIVLFGSFSSFPVHAAM 472
Query: 475 CSQEILVVRE---------ELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIY 525
S+ I E E+LS+ N I HV G D ++ + +
Sbjct: 473 SSKNISSTTEYKNNFDSLAEMLSQF-ENIINH-------THVVLIPGPHD-PWVSLCSLG 523
Query: 526 VEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE---------- 575
G++ ++P + N T A+NP R+ Y SQEI++ R+
Sbjct: 524 ANGSLPQS----SIPTHFSKRMNKICKNITWASNPTRIAYLSQEIVLFRDNFLELCKRHQ 579
Query: 576 ---------------ELLSKMCRNCI---------------KFPEEGDISKHFVRTLVSQ 605
EL +M N I + P + S+ V+TL+ Q
Sbjct: 580 ILFPVVESKRAEDLAELEEQMANNSIDDTTILVDRIISEKQQLPAKVLESRKVVKTLLDQ 639
Query: 606 GTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINP 656
G L ++ P+ W L+LYP+P +IL D + AY + C INP
Sbjct: 640 GHLSPFVDSIRPISWDMDHTLTLYPIPSTLILADMSSAAYDLTYNGCKTINP 691
Score = 33.9 bits (76), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 40/79 (50%), Gaps = 9/79 (11%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA-----DSDAKSKLFRERYNIIRQRTLRH 88
F +I+ D +F Y+P ++ K +L + ++ AK+ LFR RY + R R LR+
Sbjct: 197 FRIINTTDQKKFSYNPVKRQIFYQPPKDQLKSVLKIPNAQAKTDLFRTRYFLTRDRLLRN 256
Query: 89 SLF----NNINPNADSVKL 103
F + NP + ++L
Sbjct: 257 ESFQSSHDTFNPLSSMIQL 275
>sp|Q6CPH8|DPB2_KLULA DNA polymerase epsilon subunit B OS=Kluyveromyces lactis (strain
ATCC 8585 / CBS 2359 / DSM 70799 / NBRC 1267 / NRRL
Y-1140 / WM37) GN=DPB2 PE=3 SV=1
Length = 710
Score = 92.4 bits (228), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 116/511 (22%), Positives = 197/511 (38%), Gaps = 107/511 (20%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRKL-----------CADSDAKSKLFRERYNIIR 288
F VI AF+ F YD +++ V + +++ + ++K LF RY+II+
Sbjct: 185 FKVIDAFNQQTFTYDHTKRQYIYVPRPKEVEKNMLSIAKLKLPNVESKVSLFTTRYHIIK 244
Query: 289 QRTLRHSLFNN---INP------------NADSVKLDWVEYLMSLTNVNH-------KTV 326
+ LR+ F N NP +D L+ Y M +T + + +
Sbjct: 245 DKVLRNEKFQNNDIFNPLSSIIEMGKHMNESDVSPLNSASY-MKITQIKNLLGHDGKNFL 303
Query: 327 VLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHY--KDQILHVDA 383
+LG++ Q + + LEDP+G ++L L Q G Y CIVLVEG Y V +
Sbjct: 304 LLGLLDQNSKGNWSLEDPSGSIELHLQQAIPTKGTYYVPGCIVLVEGIYYTASNTFVVSS 363
Query: 384 LGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKN-NENAMIVIL 434
+ PP E +++ GN ++ G +P + V R+ K +E+ ++N +++
Sbjct: 364 ITHPPGEKREDTIEAIGNLDLLGAYNPSNENYVARLDKDLKIRLHYLEQELSDNKFVILG 423
Query: 435 SDVHLDN----DKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKM 490
D++LD D ++ + T V N + + P V L +K
Sbjct: 424 GDIYLDEMTTMDGLKKTFDKLTTDPPVAIVFNGSFVSVP------------VHPSLNAKN 471
Query: 491 CRNCIKFPEEGDISKHVSKNN----GEKDIIFLIVPK----IYVEGTVTSKVLSPALPKF 542
+ + D + N + +IF+ P V T+ +P
Sbjct: 472 VSATVSYKNNFDALATLLSNYENLINDTHMIFIPGPNDPWTSMVGLGTTTMWPQKIIPSS 531
Query: 543 ITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--------EEGDI 594
T + +NP R+ Y SQEI++ R++L ++ R I FP E ++
Sbjct: 532 FTQKMSRICRKVHWGSNPLRIAYLSQEIVLTRDDLANRFKRYNIVFPTVEEEKYLENAEL 591
Query: 595 ----------------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGAL 626
S+ V+TL+ Q L + P W L
Sbjct: 592 QEQYSRNPDVSVGQLIAFKNNLPVSVLESRKLVKTLLDQQHLSPFSSRIRPTVWDLDFTL 651
Query: 627 SLYPLPDLVILGD-QLNAYTIQNTDCIFINP 656
L PLP ++L D A+ + C INP
Sbjct: 652 QLSPLPSSIMLCDTSAPAFDVTYNGCKTINP 682
Score = 33.9 bits (76), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 11/71 (15%)
Query: 34 FSVISAFDIPQFDYDPDLKKFKLVDKKRKL-----------CADSDAKSKLFRERYNIIR 82
F VI AF+ F YD +++ V + +++ + ++K LF RY+II+
Sbjct: 185 FKVIDAFNQQTFTYDHTKRQYIYVPRPKEVEKNMLSIAKLKLPNVESKVSLFTTRYHIIK 244
Query: 83 QRTLRHSLFNN 93
+ LR+ F N
Sbjct: 245 DKVLRNEKFQN 255
>sp|P24482|DPB2_YEAST DNA polymerase epsilon subunit B OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=DPB2 PE=1 SV=3
Length = 689
Score = 84.7 bits (208), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 116/502 (23%), Positives = 210/502 (41%), Gaps = 95/502 (18%)
Query: 240 FSVISAFDIPQFDYDPDLKKFKLVDKKRK--------LCADSDAKSKLFRERYNIIRQRT 291
F VI+A +F Y+P +F V K++ D + K ++F RY + R
Sbjct: 170 FKVINASQQQRFSYNPHKMQFIFVPNKKQNGLGGIAGFLPDIEDKVQMFLTRYYLTNDRV 229
Query: 292 LRHSLFNN---INPNADSVKLD---------WVEYLMSLTNVN-------HKTVVLGMIS 332
+R+ F N NP + V L MS+T + ++LG+++
Sbjct: 230 MRNENFQNSDMFNPLSSMVSLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNFLLLGLLN 289
Query: 333 QLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPP 389
+ + + LEDP+G V++D+SQT G Y C+VLVEG Y HV ++ PP
Sbjct: 290 KNFKGNWSLEDPSGSVEIDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPG 349
Query: 390 EASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------MEKNNENAMIVIL-SDVHLD 440
E + + GN ++ G + + R+ K +EK + VIL +++ LD
Sbjct: 350 ERREITLETIGNLDLLGIHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLD 409
Query: 441 NDKVRNNLCEFITSEFQGFVPNSTMATNP--CRVQYCSQEILVVREELLSKMCRNCIKFP 498
+ K+ L + + + +P + S + V + S+ + +F
Sbjct: 410 DLKIMTALSKIL----------QKLNDDPPTLLIWQGSFTSVPVFASMSSRNISSSTQFK 459
Query: 499 EEGD-ISKHVSK-NNGEKDIIFLIVPKIY-VEGTVTSKVLSPALPK-----FITSEFQGF 550
D ++ +S+ +N ++ + +P + G++ S S LP+ T +
Sbjct: 460 NNFDALATLLSRFDNLTENTTMIFIPGPNDLWGSMVSLGASGTLPQDPIPSAFTKKINKV 519
Query: 551 VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDI-------------- 594
N ++NP R+ Y SQEI++ R++L + R+ ++FP E D+
Sbjct: 520 CKNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTENDNMMSKDTDI 579
Query: 595 -------------------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
++ V+T++ QG L +L P+ W L+L P+P +
Sbjct: 580 VPIDELVKEPDQLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCPIPSTM 639
Query: 636 ILGDQLNA-YTIQNTDCIFINP 656
+L D +A + + C INP
Sbjct: 640 VLCDTTSAQFDLTYNGCKVINP 661
>sp|Q758V1|DPB2_ASHGO DNA polymerase epsilon subunit B OS=Ashbya gossypii (strain ATCC
10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056) GN=DPB2
PE=3 SV=1
Length = 677
Score = 83.6 bits (205), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 116/524 (22%), Positives = 197/524 (37%), Gaps = 101/524 (19%)
Query: 224 LSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCA---------DSD 274
+ + R E F VI F QF YD ++++LV ++ +
Sbjct: 136 MDEDTVREEPLDWTHYFKVIDTFSQQQFTYDVTKRRYRLVQQRESAAGPLSTLLRIPSLE 195
Query: 275 AKSKLFRERYNIIRQRTLRHSLFNN---INP-----------NADSVKLDWVEYLMSLTN 320
A F RY+++R R LR++ F N NP +A L Y MS+T
Sbjct: 196 ANLAQFPTRYHLVRDRVLRNASFQNDDVYNPLSSMQQLQQQLDAGGAPLASTAY-MSITQ 254
Query: 321 VNH-------KTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEG 372
+ + ++LG+I + + + LEDP+G +++D+S+T G Y CIVL EG
Sbjct: 255 IKNLLGRDGKNFLLLGLIRKDSKGFWSLEDPSGSIEIDISETYPTKGTYYVPGCIVLAEG 314
Query: 373 HYKDQ--ILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTK--------M 422
Y V ++ PP E + GN ++ G P + ++R+ K +
Sbjct: 315 IYSSAGNRFRVSSITHPPGERREAFLEAIGNLDLLGIHGPSNESYISRLDKELKIRLHYL 374
Query: 423 EKNNENAMIVIL-SDVHLDNDKVRNNLCE-FITSEFQG----FVPNSTMATN--PCRVQY 474
EK + V L ++ LD+ L + F E +P S +T P
Sbjct: 375 EKELTDHRFVFLGGNIFLDDTMTETALAKLFDVLEHDPPTVLVLPGSFTSTPIYPSSDSK 434
Query: 475 CSQEILVVRE--ELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTS 532
S R + L+K+ + E N+ + +L V GT+
Sbjct: 435 SSSSTAAYRANFDALAKLLSKYERLINETTFVFIPGDNDPWGSMAYL-----GVAGTLPQ 489
Query: 533 KVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--- 589
+P ++ + +NP R+ Y SQE++++R+++ ++ RN I FP
Sbjct: 490 H----PIPGDFVTKVNRICKHVVWGSNPTRIAYLSQELVIMRDDMCNRFKRNSIIFPTVE 545
Query: 590 ------------------EEGDI------------------SKHFVRTLVSQGTLVSLPL 613
D+ S+ V+T++ Q L
Sbjct: 546 EEQKQEYMLLQQELQDDERSSDLSISQLIKSRDQLPASVQESRKIVKTILDQQHLSPFTS 605
Query: 614 NLCPVYWSQYGALSLYPLPDLVILGDQLN-AYTIQNTDCIFINP 656
+ P+ W L L P+P +I+ D Y + C INP
Sbjct: 606 QVRPITWDYDYTLHLSPIPSTMIICDPTAPKYDVTYNGCKSINP 649
Score = 40.4 bits (93), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 44/105 (41%), Gaps = 19/105 (18%)
Query: 8 PSCTYDLIEFTTNECCRTEINSEEQI----------FSVISAFDIPQFDYDPDLKKFKLV 57
P+ Y +E + + TE E+ + F VI F QF YD ++++LV
Sbjct: 116 PTEAYSAVESSGGDVTATEPMDEDTVREEPLDWTHYFKVIDTFSQQQFTYDVTKRRYRLV 175
Query: 58 DKKRKLCA---------DSDAKSKLFRERYNIIRQRTLRHSLFNN 93
++ +A F RY+++R R LR++ F N
Sbjct: 176 QQRESAAGPLSTLLRIPSLEANLAQFPTRYHLVRDRVLRNASFQN 220
>sp|Q6C030|DPB2_YARLI DNA polymerase epsilon subunit B OS=Yarrowia lipolytica (strain
CLIB 122 / E 150) GN=DPB2 PE=3 SV=1
Length = 652
Score = 68.9 bits (167), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 66/239 (27%), Positives = 108/239 (45%), Gaps = 28/239 (11%)
Query: 237 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 296
++ F VISAFD P F Y+ ++F+ K L A++ + S +F RY+++ R LR
Sbjct: 138 KEFFKVISAFDQPLFHYNARQQRFEKRKTKPTLFANAQSASNMFLTRYHLVYNRLLR--- 194
Query: 297 FNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQT- 355
N D+ L + + SL + + GM+S+ E + L+D TG + L L+
Sbjct: 195 ------NDDTTDLK-ITSIRSLIGRQGEFSIFGMLSKNPEQKICLQDDTGRILLILAAGC 247
Query: 356 SYHPGL-YTENCIVLVEGHY----KDQILHVDALGFPPPEASKNSRLYFGNQN---IWGG 407
PG+ Y E V+ G Y ++ V +G P E + + +GN + + G
Sbjct: 248 KPDPGVYYPEGSFVICNGRYMKSGDAEVFVVITMGPPVAEKRQETITAYGNMDYLGLHGN 307
Query: 408 PSPVSLKSVNR-----MTKMEKN-NENAMIVILSDVHLDND---KVRNNLCEFITSEFQ 457
P ++ + R M EK + +IV D++LDN K + I EFQ
Sbjct: 308 PHGSVVRRIERQVEASMLAEEKRLVDQKVIVFGGDMYLDNPLTLKALQKVFSTIELEFQ 366
Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 10/97 (10%)
Query: 31 EQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL 90
++ F VISAFD P F Y+ ++F+ K L A++ + S +F RY+++ R LR
Sbjct: 138 KEFFKVISAFDQPLFHYNARQQRFEKRKTKPTLFANAQSASNMFLTRYHLVYNRLLR--- 194
Query: 91 FNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQ 127
N D+ L + + SL + + GM+S+
Sbjct: 195 ------NDDTTDLK-ITSIRSLIGRQGEFSIFGMLSK 224
Score = 35.4 bits (80), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 32/63 (50%), Gaps = 1/63 (1%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
S+ VRT+ QG L + PV W L L PLP ++ + D ++++ +C+
Sbjct: 562 SRKIVRTICDQGHLSPFNRHDRPVAWDYDETLWLSPLPTILFMVDTHAPKFSLRYEECMV 621
Query: 654 INP 656
+NP
Sbjct: 622 VNP 624
>sp|Q6BQR8|DPB2_DEBHA DNA polymerase epsilon subunit B OS=Debaryomyces hansenii (strain
ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968)
GN=DPB2 PE=3 SV=1
Length = 669
Score = 65.5 bits (158), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 108/531 (20%), Positives = 204/531 (38%), Gaps = 134/531 (25%)
Query: 209 PVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLV--DKK 266
PV+N E N +NW + F VI+ + P + YD K+ +
Sbjct: 126 PVNNAE--NTLNW---------------QDYFKVINPDEQPNYKYDKHRKQLSFIPSTNA 168
Query: 267 RKLCADSDAKSKLFRERYNIIRQRTLRHSLFNN------------INPNADSVKLDWVEY 314
++L + ++ F RY++I R R+ F ++ N + ++ ++
Sbjct: 169 KRLANNLNSNVDYFNNRYHLISDRLSRNENFQKPSFSSISSISKSLSHNNKTNEITLIKN 228
Query: 315 LMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG-LYTENCIVLVEGH 373
++ K ++ G++S+ + + LED T ++L+L+Q G Y V+VEG
Sbjct: 229 VLGRDG--SKFILFGLLSKNANDDFILEDSTDHIELNLTQAYKTEGSFYCPGMFVIVEGI 286
Query: 374 YK------------DQILHVDALGFPPPEASKNSRLYFGNQNIWG-------GPSPVSLK 414
Y HV +G PP E + S +GN + G + +
Sbjct: 287 YSASGGSMSNANVIGGCFHVSNIGHPPAERRELSMENYGNLDFMGINRDNDTNNNDNHIL 346
Query: 415 SVNRMTK-----MEKNNENAMIVIL-SDVHLDN-----------DKVRNNLCEFITSE-- 455
VN+ K +EK N ++IL SD LD+ K+ ++L + T++
Sbjct: 347 RVNKSLKKKLVSLEKTLVNHKLIILGSDCFLDDLKILDGIKKLFGKIESSLIDDETNQPL 406
Query: 456 ----FQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNN 511
F N TN + E + LS + N FP N
Sbjct: 407 VIVLIGSFTSNPLTPTNSSVANVSNTENYKSNFDNLSNILSN---FP------------N 451
Query: 512 GEKDIIFLIVPKI--------YVEGTVTSKVLSPALPKFITSEFQGFVPNSTMAT--NPC 561
+ + ++P I + G+ + ++PK T+ + +P + NP
Sbjct: 452 IVQKVKIALIPGINDPWQSSHSLGGSNLNAFPQRSIPKIFTNRLERLLPKGNLIAGWNPL 511
Query: 562 RVQYCSQEILVVREELLSKMCRNCIKFPEEGDI--------------------------- 594
R+ Y SQEI+++++++++K RN I F + ++
Sbjct: 512 RINYLSQEIVLMKDDIINKFKRNDIIFSNDLELEQLKLQKDKNDDGLIHATDINTKEPHI 571
Query: 595 ------SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD 639
++ V+T++ QG L ++ + + +L + PLP ++IL D
Sbjct: 572 SPKIKQARKLVKTILDQGNLQPFLKDIRIINTNFDYSLRIEPLPTILILND 622
>sp|A8Z5T3|RPOB_SULMW DNA-directed RNA polymerase subunit beta OS=Sulcia muelleri (strain
GWSS) GN=rpoB PE=3 SV=1
Length = 1328
Score = 40.4 bits (93), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 55/253 (21%), Positives = 103/253 (40%), Gaps = 35/253 (13%)
Query: 472 VQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVT 531
V Y + V ++ + + I F E D ++ + +N + + L+ PK + GT
Sbjct: 616 VNYKKINYIDVSTNQIASISASLIPFLEHDDANRALMGSNMMRQSVPLLNPKAPIVGTGL 675
Query: 532 SKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCR----NCIK 587
K L+ + I +E G V ++ N +V+Y + E +E+LLS R IK
Sbjct: 676 EKHLAQYVNALIYAEGDGIV--ESVDANNIKVKYFNSE----KEKLLSFEKRIKTYKLIK 729
Query: 588 FPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSL-------------YPLPDL 634
F + + +R +V +G V+ LC + +Q G L+L Y D
Sbjct: 730 FRKTNQNTCLNIRPIVKKGMYVTKGQVLCEGFATQNGKLALGRNIKVAFMPFKGYNFEDA 789
Query: 635 VILGDQ-----------LNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVWLIQ 683
+++ ++ ++ Y+++ D F + N F E + G+ I
Sbjct: 790 IVISEKVVREDWFTSIHIDEYSLEVRDTKLGMEEFTFDIPN-FNEENKKKLDKYGIIKIG 848
Query: 684 SSFKPEVIYVGEL 696
S KP + +G +
Sbjct: 849 SEVKPGDVLIGRI 861
>sp|Q5YQ92|EX7L_NOCFA Exodeoxyribonuclease 7 large subunit OS=Nocardia farcinica (strain
IFM 10152) GN=xseA PE=3 SV=1
Length = 425
Score = 39.7 bits (91), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 44/103 (42%), Gaps = 4/103 (3%)
Query: 184 TDVQGPVTAFETYHNLVPLILHPVIPVS--NREQNNIMNWLKLSSEC-CRTEINSEEQIF 240
T VQGP + L L HP + V R ++ + L S E CR + + I
Sbjct: 182 TAVQGPTAVPQILTALAELDRHPEVEVIVLARGGGSVEDLLPFSDEALCRAIVAATTPIV 241
Query: 241 SVIS-AFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRE 282
S I D P DY DL+ D +++ D+ A+ L RE
Sbjct: 242 SAIGHEPDNPLSDYVADLRAATPTDAAKRVVPDAAAELALVRE 284
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.137 0.415
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 265,616,028
Number of Sequences: 539616
Number of extensions: 11228727
Number of successful extensions: 25691
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 25573
Number of HSP's gapped (non-prelim): 66
length of query: 707
length of database: 191,569,459
effective HSP length: 125
effective length of query: 582
effective length of database: 124,117,459
effective search space: 72236361138
effective search space used: 72236361138
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)