Query psy2623
Match_columns 707
No_of_seqs 244 out of 447
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:57:50 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy2623.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/2623hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3flo_A DNA polymerase alpha su 100.0 2.6E-31 8.9E-36 293.8 24.8 330 272-663 8-412 (460)
2 3e0j_A DNA polymerase subunit 99.9 3.8E-21 1.3E-25 213.6 21.7 335 274-672 55-448 (476)
3 1s3l_A Hypothetical protein MJ 96.0 0.08 2.7E-06 51.6 13.3 98 518-672 78-179 (190)
4 4fbk_A DNA repair and telomere 95.5 0.049 1.7E-06 60.8 10.7 214 426-661 74-333 (472)
5 4fbw_A DNA repair protein RAD3 94.0 0.15 5.1E-06 56.1 9.5 212 427-661 12-270 (417)
6 3t1i_A Double-strand break rep 93.2 0.83 2.9E-05 50.4 13.8 31 631-663 257-291 (431)
7 3av0_A DNA double-strand break 92.4 0.69 2.4E-05 49.7 11.5 30 631-662 198-227 (386)
8 3ib7_A ICC protein; metallopho 90.7 2.6 8.9E-05 43.1 13.4 30 631-662 211-240 (330)
9 2q8u_A Exonuclease, putative; 86.8 0.55 1.9E-05 49.2 5.0 29 631-662 220-248 (336)
10 2kkn_A Uncharacterized protein 85.9 1.2 4.2E-05 42.6 6.5 44 631-680 128-171 (178)
11 3tho_B Exonuclease, putative; 82.9 6.8 0.00023 41.9 11.5 30 630-662 201-230 (379)
12 3flo_A DNA polymerase alpha su 80.3 0.92 3.1E-05 50.4 3.5 96 423-526 229-333 (460)
13 1z2w_A Vacuolar protein sortin 73.2 5.8 0.0002 37.9 6.6 40 631-672 117-164 (192)
14 2a22_A Vacuolar protein sortin 70.7 7.3 0.00025 38.1 6.7 45 631-679 141-193 (215)
15 3ck2_A Conserved uncharacteriz 69.6 6.2 0.00021 37.0 5.8 48 631-682 105-157 (176)
16 2yvt_A Hypothetical protein AQ 65.5 10 0.00036 37.2 6.7 41 631-678 212-252 (260)
17 1su1_A Hypothetical protein YF 64.5 7.8 0.00027 37.7 5.5 40 631-672 143-186 (208)
18 2kct_A Cytochrome C-type bioge 60.4 66 0.0022 27.9 9.9 61 322-384 8-81 (94)
19 4gop_B Putative uncharacterize 54.7 31 0.001 31.4 7.3 53 323-375 37-98 (136)
20 1sr3_A APO-CCME; OB fold, beta 53.4 48 0.0016 30.7 8.3 62 321-384 27-97 (136)
21 1j6q_A Cytochrome C maturation 52.8 61 0.0021 30.0 9.0 63 320-384 30-102 (136)
22 1nnw_A Hypothetical protein; s 51.1 22 0.00074 34.9 6.1 41 630-672 166-211 (252)
23 1uf3_A Hypothetical protein TT 49.3 6 0.00021 37.8 1.7 37 631-672 180-216 (228)
24 1uf3_A Hypothetical protein TT 48.1 16 0.00054 34.7 4.5 39 429-472 6-45 (228)
25 1g5b_A Serine/threonine protei 45.1 17 0.00059 35.2 4.3 40 631-672 178-217 (221)
26 3qfm_A SAPH, putative uncharac 44.6 24 0.00083 35.7 5.4 40 631-672 164-215 (270)
27 3mxn_B RECQ-mediated genome in 44.6 60 0.0021 30.4 7.5 53 323-375 59-112 (150)
28 2yvt_A Hypothetical protein AQ 43.6 10 0.00035 37.2 2.4 40 429-472 6-45 (260)
29 3kdf_D Replication protein A 3 41.6 76 0.0026 28.5 7.8 53 323-375 32-93 (132)
30 3d03_A Phosphohydrolase; glyce 40.1 18 0.00062 35.5 3.6 70 430-526 2-82 (274)
31 3e0j_A DNA polymerase subunit 37.8 19 0.00063 40.2 3.4 80 39-133 30-112 (476)
32 1nnx_A Protein YGIW; structura 36.3 1E+02 0.0035 27.3 7.5 67 309-376 25-92 (109)
33 1ii7_A MRE11 nuclease; RAD50, 33.1 23 0.0008 36.7 3.2 76 430-527 2-87 (333)
34 3rqz_A Metallophosphoesterase; 30.6 62 0.0021 31.7 5.7 39 632-672 143-207 (246)
35 2nxf_A Putative dimetal phosph 29.8 15 0.00051 36.8 1.0 78 424-526 1-98 (322)
36 3rl5_A Metallophosphoesterase 29.7 26 0.00088 36.5 2.7 32 630-663 245-277 (296)
37 2pi2_A Replication protein A 3 27.8 1.4E+02 0.0049 30.2 8.0 53 323-375 72-133 (270)
38 2xmo_A LMO2642 protein; phosph 24.1 29 0.00098 37.3 2.0 79 424-526 35-136 (443)
No 1
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=99.98 E-value=2.6e-31 Score=293.84 Aligned_cols=330 Identities=15% Similarity=0.094 Sum_probs=229.6
Q ss_pred CchhHHHHHHHHHHHHHHHhhhcc-----ccCCCCCCCCcccchHHHHhhcccCCcceEEEEEEeeecc---CCc-----
Q psy2623 272 DSDAKSKLFRERYNIIRQRTLRHS-----LFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLK---ENR----- 338 (707)
Q Consensus 272 ~a~sk~~lfr~Ry~~i~qrllR~~-----~F~~~~~~~~~~klt~I~~Llg~~~~~~~~vvLG~Lsq~~---~G~----- 338 (707)
.-.++++++.+|-.-..+.+..+- .|++++. .....++++|++.... +|+
T Consensus 8 kl~e~~~vLd~~I~~~~~~~~~~~~~~~~~f~~p~~-----------------~sq~~v~~vGRI~~Ds~~~egkLn~~S 70 (460)
T 3flo_A 8 NLQEASDVLDDQIESFTKIIQNHYKLSPNDFADPTI-----------------QSQSEIYAVGRIVPDSPTYDKFLNPES 70 (460)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHTCCGGGBCCTTS-----------------CCSSCEEEEEEEEESSSSCCSCCCTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCccc-----------------CccccEEEEEEEeeCCCCCCCCcchhh
Confidence 345666777777665555555541 3555421 1124899999998875 664
Q ss_pred EEeecC-----CceEEEEeeccccCCCccCcCeEEEEEeEec-CceEEEEeecCCCccCccccccccCcccccCCCCCch
Q psy2623 339 YFLEDP-----TGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVS 412 (707)
Q Consensus 339 ~~LED~-----tg~i~Ldls~a~~~~g~f~p~~iVLveG~f~-s~~f~v~~i~~PP~E~r~~S~~~~gn~D~fG~~~~~~ 412 (707)
+.||-. -.+|+||++..+ +--+.||+||.++|... ++.|.|+++--+|.-....+.
T Consensus 71 l~LE~sr~~g~G~rV~Ldls~l~--~~slFPGQIVav~G~N~~G~~f~v~ei~~~P~~~~p~s~---------------- 132 (460)
T 3flo_A 71 LSLETSRMGGVGRRVRLDLSQVN--ELSFFLGQIVAFKGKNANGDYFTVNSILPLPYPNSPVST---------------- 132 (460)
T ss_dssp EEEECCHHHHTTCEEEEECTTCC--CEEECTTCEEEEEEECSSSSCEEEEEECCCCCCCCCEEE----------------
T ss_pred eEEEeccccCCCeEEEeecccCC--ceeecCCCEEEEEEEcCCCCEEEEeeeccCCCCCCCCCC----------------
Confidence 688832 358999998754 22269999999999996 568999998533322111110
Q ss_pred hhhhhHHHhhh-hc-CCcceEEEEeCCCCCc-hhhchhhHHHhHhhhccc-cCCCCCCCCCCCcccc---cc--------
Q psy2623 413 LKSVNRMTKME-KN-NENAMIVILSDVHLDN-DKVRNNLCEFITSEFQGF-VPNSTMATNPCRVQYC---SQ-------- 477 (707)
Q Consensus 413 ~k~~~~L~~~e-~~-~~~~~fVfvSD~~Lds-~~~~~~L~~~l~~lf~~~-~~~~p~aGNF~s~~y~---sq-------- 477 (707)
.+.+.++. +. ....++|+.|+|+..+ .+..++|.+++.++-.++ .+.+.++|+|++.... +.
T Consensus 133 ---~~~l~~~~~~~~~~~l~ivvAsGPyT~sdnl~yepL~~Ll~~v~~~~kPdvLIL~GPFvD~~hp~i~~G~~p~~~~~ 209 (460)
T 3flo_A 133 ---SQELQEFQANLEGSSLKVIVTCGPYFANDNFSLELLQEFIDSINNEVKPHVLIMFGPFIDITHPLIASGKLPNFPQF 209 (460)
T ss_dssp ---HHHHHHHHHHHTSSCEEEEEEESCCSCSSCCCCHHHHHHHHHCCCCCCCSEEEEESCSSBTTCHHHHHTCCCCCTTC
T ss_pred ---HHHhhhhhhhccCCCcEEEEEeCCccCCCccChHHHHHHHHHHHhccCCCEEEEecCcccccCcccccCcccccccc
Confidence 11122211 11 3557789999999665 677899999555533332 2224567999987532 11
Q ss_pred --ceEEeHHHHHHHhhhccCCCCCc-CC-ccccccccCCcceeEEEEecCCCCCCCCCCcccCCCccHHHHHHhhccCC-
Q psy2623 478 --EILVVREELLSKMCRNCIKFPEE-GD-ISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVP- 552 (707)
Q Consensus 478 --eiv~~rd~f~~km~RN~i~fp~L-ad-L~~~p~l~~~~s~~~fVfVPG~~Dp~~~~~~LPrpplP~~~~~~l~~~~~- 552 (707)
....|.+-|. .. +. +.+ +. .++| +|+|||++|++....++||||+++... +..+
T Consensus 210 ~~~~~t~~~lF~-----------~~i~~il~~---l~-~~t~--VVlVPS~rD~~~~~~v~PQPpf~~k~l----~l~k~ 268 (460)
T 3flo_A 210 KTQPKTLDELFL-----------KLFTPILKT---IS-PHIQ--TVLIPSTKDAISNHAAYPQASLIRKAL----QLPKR 268 (460)
T ss_dssp SSCCSSHHHHHH-----------HHTHHHHTT---SC-TTSE--EEEECCTTBTTCSCCSBSBCCCCTTTT----TCCTT
T ss_pred cccccCHHHHHH-----------HHHHHHHHh---cc-CCCE--EEEeCCcccccCCCCCcCCCCCChhhh----cCCcc
Confidence 1345666666 22 22 332 23 7789 999999999985246999999996532 2344
Q ss_pred CeEEeeCCcEEEECCEEEEEEehhHHHHhhhccccCC--CCCChhHHHHHHHhcCCCCCCCCCCCccccc----------
Q psy2623 553 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDISKHFVRTLVSQGTLVSLPLNLCPVYW---------- 620 (707)
Q Consensus 553 n~~f~SNPcRi~~~~qeIvifRdDl~~~l~r~~i~~p--~~~d~~~~lvktIL~Q~HL~Pl~~~~~Pi~w---------- 620 (707)
|++|+||||++++++++|++++.|++.+|+ +....+ .+.|+..++++|||+|+||||+++...++.|
T Consensus 269 nv~~~sNPc~~~in~v~igvss~Dil~~L~-e~~~~~~~~~~dr~~Rl~~hlL~Qr~~yPL~P~~~~~~~~~~~~~~~~~ 347 (460)
T 3flo_A 269 NFKCMANPSSFQINEIYFGCSNVDTFKDLK-EVIKGGTTSSRYRLDRVSEHILQQRRYYPIFPGSIRTRIKPKDVSTKKE 347 (460)
T ss_dssp TEEECCBSEEEEETTEEEEECCSCHHHHCC-CEEECHHHHHSCHHHHHHHHHHHHTBSCCCSSCCEEC------------
T ss_pred cEEEeCCCEEEEECCEEEEEEcHHHHHHHH-HhhcCCCCccccHHHHHHHHHhhcCcccCcCCCcccccccccccccccc
Confidence 999999999999999999999999999996 433332 2368999999999999999999999999888
Q ss_pred ----------Ccccc----c-----c---c--CCCCcEEEecCCCCCceeeeCCeEEEcCCCCcccc
Q psy2623 621 ----------SQYGA----L-----S---L--YPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVR 663 (707)
Q Consensus 621 ----------~~D~a----L-----~---L--~PlPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~ 663 (707)
+|+++ | . + +.+||+||+++...+|+..++||.||||| +|.|
T Consensus 348 ~~~~~~~~~~~~~~~~g~~Ldv~yl~l~e~~~~~~PDilI~PS~l~~F~kvv~~~v~INPG--~l~k 412 (460)
T 3flo_A 348 TNDMESKEEKVYEHISGADLDVSYLGLTEFVGGFSPDIMIIPSELQHFARVVQNVVVINPG--RFIR 412 (460)
T ss_dssp -------------CCEECCBCGGGGGGGBCGGGCCCSEEECCCSSCCEEEEETTEEEEECC--CSBC
T ss_pred cccccccccccccccCCcccceeccchhhcccCCCCCEEEcCCCCcCceEEeCCEEEECcc--cccC
Confidence 22321 2 2 2 88999999999999999999999999999 9988
No 2
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=99.87 E-value=3.8e-21 Score=213.64 Aligned_cols=335 Identities=10% Similarity=0.077 Sum_probs=213.9
Q ss_pred hhHHHHHHHHHHHHHHHhhhccc--cCCCCCCCCcccchHHHHhhcccCCcceEEEEEEeeec-----------------
Q psy2623 274 DAKSKLFRERYNIIRQRTLRHSL--FNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQL----------------- 334 (707)
Q Consensus 274 ~sk~~lfr~Ry~~i~qrllR~~~--F~~~~~~~~~~klt~I~~Llg~~~~~~~~vvLG~Lsq~----------------- 334 (707)
....++|+.|++.+|.++.++.. .++ ..+ |..++.-. .++..+|+|.|.+.
T Consensus 55 ~QY~~iY~~RL~~Lr~~l~~~a~~kw~~------~~~---i~klldl~-~ge~c~viGTvyk~m~lKPsIL~eis~e~~~ 124 (476)
T 3e0j_A 55 RQYAHIYATRLIQMRPFLENRAQQHWGS------GVG---VKKLCELQ-PEEKCCVVGTLFKAMPLQPSILREVSEEHNL 124 (476)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHSCS------CCC---BCCSSSCC-TTCCEEEEEEEEEEC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC------Ccc---chHhhccc-CCCEEEEEEEEEecccCCCcHHHHHhhhhcc
Confidence 67789999999999999977752 221 122 22333322 23689999999642
Q ss_pred -----------cCCcEEeecCCceEEEEeeccccCCCccCcCeEEEEEeEec-CceEEEEeecCCCccCccccccccCcc
Q psy2623 335 -----------KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDALGFPPPEASKNSRLYFGNQ 402 (707)
Q Consensus 335 -----------~~G~~~LED~tg~i~Ldls~a~~~~g~f~p~~iVLveG~f~-s~~f~v~~i~~PP~E~r~~S~~~~gn~ 402 (707)
+++.++|||.+|+++|.. ......+..|++|.+.|... +|.|.|..+.+|..-+...
T Consensus 125 ~~~~~~~~y~~~~D~l~LEDesGRv~L~g---~~~~~~lVTG~VvaV~G~~~~~G~F~V~di~~Pd~ppq~~-------- 193 (476)
T 3e0j_A 125 LPQPPRSKYIHPDDELVLEDELQRIKLKG---TIDVSKLVTGTVLAVFGSVRDDGKFLVEDYCFADLAPQKP-------- 193 (476)
T ss_dssp ------CCCCCSSCEEEEECSSCEEEEEE---SCCTTTCCTTCEEEEEEEECTTSSEEEEEEEECBCCCCCC--------
T ss_pred CCCCccccccCCCceEEEECCCCEEEEEE---EcccccccCCcEEEEEEEEcCCCeEEEEEEEcCCCCCCCC--------
Confidence 234699999999999986 23445689999999999986 6899999997764331100
Q ss_pred cccCCCCCchhhhhhHHHhhhhcCCcceEEEEeCCCCCchhh--chhhHHHhHhhhccc------------cCCCCCCCC
Q psy2623 403 NIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKV--RNNLCEFITSEFQGF------------VPNSTMATN 468 (707)
Q Consensus 403 D~fG~~~~~~~k~~~~L~~~e~~~~~~~fVfvSD~~Lds~~~--~~~L~~~l~~lf~~~------------~~~~p~aGN 468 (707)
.+...++.+++|+||+++++... ...+..++.++ .|. +.+..+|||
T Consensus 194 -------------------~~~~~~~~~ialVSGL~igs~~~~~~~~~~ll~d~L-~G~~g~~~~~~~as~I~rlIIAGn 253 (476)
T 3e0j_A 194 -------------------APPLDTDRFVLLVSGLGLGGGGGESLLGTQLLVDVV-TGQLGDEGEQCSAAHVSRVILAGN 253 (476)
T ss_dssp -------------------CCCCSSCCEEEEECCCCBTSSCHHHHHHHHHHHHHH-HTCSSCHHHHHHHTTEEEEEEESC
T ss_pred -------------------CCcCCCCCEEEEECCcccCCCcccchHHHHHHHHHH-cCCCCCccccchhhceeEEEEECC
Confidence 00123567899999999998632 34555544443 332 223466799
Q ss_pred CCCccccccceE---EeHHHHHHHhhhccCCCCCcCC-ccccccccCCcceeEEEEecCCCCCCCCCCcccCCCccHHHH
Q psy2623 469 PCRVQYCSQEIL---VVREELLSKMCRNCIKFPEEGD-ISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFIT 544 (707)
Q Consensus 469 F~s~~y~sqeiv---~~rd~f~~km~RN~i~fp~Lad-L~~~p~l~~~~s~~~fVfVPG~~Dp~~~~~~LPrpplP~~~~ 544 (707)
-.+..-...+.. .|...-. ...+...++.++. |.+- . +... +++.||++||+. .+||||||++.+.
T Consensus 254 ~v~~~~~~~e~~~~~~y~~~~~--~~~~~~~~~~ld~~L~~l---~-~~i~--V~lmPG~~DP~~--~~lPQqplh~~lf 323 (476)
T 3e0j_A 254 LLSHSTQSRDSINKAKYLTKKT--QAASVEAVKMLDEILLQL---S-ASVP--VDVMPGEFDPTN--YTLPQQPLHPCMF 323 (476)
T ss_dssp SBCC-------------CHHHH--HHHHHHHHHHHHHHHHHH---H-TTSC--EEEECCTTSSSC--SSSSCCCCCTTSC
T ss_pred ccccccccchhhhhhhcccccc--chhhHHHHHHHHHHHHhc---c-cCce--EEecCCCCCccc--ccCCCCCcCHHHh
Confidence 887641111111 1100000 0000001112333 4443 3 4447 999999999997 8999999999876
Q ss_pred HHhhccCCCeEEeeCCcEEEECCEEEEEEe----hhHHHHhhhccccCCCCCChhHHHHHHHhcCCCCCCCCCCCccccc
Q psy2623 545 SEFQGFVPNSTMATNPCRVQYCSQEILVVR----EELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYW 620 (707)
Q Consensus 545 ~~l~~~~~n~~f~SNPcRi~~~~qeIvifR----dDl~~~l~r~~i~~p~~~d~~~~lvktIL~Q~HL~Pl~~~~~Pi~w 620 (707)
..- +++.++.++|||+.++++|..++.++ |||++... .+..-.+|+.+|.-|||+|..+..-|+++
T Consensus 324 p~s-~~~~~~~~vtNP~~~~i~G~~~LgtsGqnidDi~ky~~---------~~~~l~~me~~LkwrHlAPTaPdTl~~yP 393 (476)
T 3e0j_A 324 PLA-TAYSTLQLVTNPYQATIDGVRFLGTSGQNVSDIFRYSS---------MEDHLEILEWTLRVRHISPTAPDTLGCYP 393 (476)
T ss_dssp HHH-HTSTTEEECCSSEEEEETTEEEEECSSHHHHHHHHHSC---------CCCHHHHHHHHHHBTCSCTTSCCC-----
T ss_pred hhh-hhcCccEEeCCCeEEEECCEEEEEECCCCHHHHHhcCC---------CCCHHHHHHHHHHHhccCCCCCCceeecc
Confidence 654 45689999999999999999999999 56655532 12356799999999999999999999998
Q ss_pred C-cccccccCCCCcEEEecCCCCCceeee-----CCeEEEcCCCCcccccCeeEEEEE
Q psy2623 621 S-QYGALSLYPLPDLVILGDQLNAYTIQN-----TDCIFINPVFHNTVRNAFEVEKEH 672 (707)
Q Consensus 621 ~-~D~aL~L~PlPd~liL~D~~~~f~~~y-----~gc~vvNPG~~sF~~~~~~f~~y~ 672 (707)
- -.|-+.|...||+++.|.....-+..+ ..|.+|--. +|++ +-+.+..+
T Consensus 394 ~~~~DpfVi~~~PhVyf~Gnq~~f~t~~~~~~~~~~vrLv~VP--~Fs~-T~~~vLvd 448 (476)
T 3e0j_A 394 FYKTDPFIFPECPHVYFCGNTPSFGSKIIRGPEDQTVLLVTVP--DFSA-TQTACLVN 448 (476)
T ss_dssp -CCSCTTSCSSCCSEEEEEEESSCEEEEEECSSCCEEEEEEEE--CHHH-HCEEEEEE
T ss_pred CCCCCceeecCCCcEEEeCCCCccceeEEecCCCCeEEEEEcC--CcCC-CCeEEEEE
Confidence 5 457899999999999999864322222 247777766 7875 44444444
No 3
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=95.99 E-value=0.08 Score=51.57 Aligned_cols=98 Identities=11% Similarity=0.079 Sum_probs=63.0
Q ss_pred EEEecCCCCCCCCCCcccCCCccHHHHHHhhcc-CCCeEEeeCCcEEEECCEEEEEEehhHHHHhhhccccCCCCCChhH
Q psy2623 518 FLIVPKIYVEGTVTSKVLSPALPKFITSEFQGF-VPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISK 596 (707)
Q Consensus 518 fVfVPG~~Dp~~~~~~LPrpplP~~~~~~l~~~-~~n~~f~SNPcRi~~~~qeIvifRdDl~~~l~r~~i~~p~~~d~~~ 596 (707)
+++|+||+|... .. +.+.+... .. .+...|..+...+..|++.+.....
T Consensus 78 ~~~V~GNhD~~~-~~----------~~~~~~~~~~~--~l~~~~~~~~~~~~~ill~Hg~~~~----------------- 127 (190)
T 1s3l_A 78 IIATYGNNDGER-CK----------LKEWLKDINEE--NIIDDFISVEIDDLKFFITHGHHQS----------------- 127 (190)
T ss_dssp EEEECCTTCCCH-HH----------HHHHHHHHCTT--CEEESEEEEEETTEEEEEEESCCHH-----------------
T ss_pred EEEEeCCCcchH-HH----------HHHHhcccChh--hhcccceEEeeCCcEEEEECCChHH-----------------
Confidence 899999999865 21 11111100 11 1556778888889999999854321
Q ss_pred HHHHHHhcCCCCCCCCCCCcccccCcccccccCCCCcEEEecCCCCCceeeeCCeEEEcCCCCcccc---cCeeEEEEE
Q psy2623 597 HFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVR---NAFEVEKEH 672 (707)
Q Consensus 597 ~lvktIL~Q~HL~Pl~~~~~Pi~w~~D~aL~L~PlPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~---~~~~f~~y~ 672 (707)
+.+.+.+ ..-+|+++.|+.+.++...++|+.++||| |... ...+|..++
T Consensus 128 -l~~~~~~------------------------~~~~d~vl~GHtH~~~~~~~~~~~~iNpG--s~~~r~~~~~~y~il~ 179 (190)
T 1s3l_A 128 -VLEMAIK------------------------SGLYDVVIYGHTHERVFEEVDDVLVINPG--ECCGYLTGIPTIGILD 179 (190)
T ss_dssp -HHHHHHH------------------------HSCCSEEEEECSSCCEEEEETTEEEEECC--CSSCTTTSCCEEEEEE
T ss_pred -HHHHHHh------------------------cCCCCEEEECCCCCcceEEECCEEEEECC--cccccCCCCCEEEEEE
Confidence 1111100 02359999999999988888999999999 8753 125666666
No 4
>4fbk_A DNA repair and telomere maintenance protein NBS1, protein RAD32 chimeric protein; DNA double-strand break repair, nuclease; HET: DNA; 2.38A {Schizosaccharomyces pombe} PDB: 4fbq_A*
Probab=95.51 E-value=0.049 Score=60.77 Aligned_cols=214 Identities=15% Similarity=0.121 Sum_probs=100.7
Q ss_pred CCcceEEEEeCCCCCchh--------hchhhHHHhHhhhccccCCCCCCCCCCCccccccceEEeHHHHHHHhhhccCC-
Q psy2623 426 NENAMIVILSDVHLDNDK--------VRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK- 496 (707)
Q Consensus 426 ~~~~~fVfvSD~~Lds~~--------~~~~L~~~l~~lf~~~~~~~p~aGNF~s~~y~sqeiv~~rd~f~~km~RN~i~- 496 (707)
...-+|+.+||.|++... +...|...+..+-....+.+.++|+.......+.+.. ..+...++|+|.+
T Consensus 74 ~~~mrilhiSDlHLG~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~ps~~a~---~~~~~~Lr~~~~g~ 150 (472)
T 4fbk_A 74 ENTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKAL---YQALRSLRLNCLGD 150 (472)
T ss_dssp TTCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCSBSSSSCCHHHH---HHHHHHHHHHHBSS
T ss_pred CCCeEEEEEecccCCCcccCcccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHH---HHHHHHHHHhcccC
Confidence 345678999999998643 2233444232222222333456799887655432211 1223333443332
Q ss_pred ----CCCcCC-ccc-----c-------ccccCCcceeEEEEecCCCCCCCCCC------cccCCCccHHHHHHhhccCCC
Q psy2623 497 ----FPEEGD-ISK-----H-------VSKNNGEKDIIFLIVPKIYVEGTVTS------KVLSPALPKFITSEFQGFVPN 553 (707)
Q Consensus 497 ----fp~Lad-L~~-----~-------p~l~~~~s~~~fVfVPG~~Dp~~~~~------~LPrpplP~~~~~~l~~~~~n 553 (707)
|+-|.+ ... | |++- .... +++|+|+||+..... .|+.+.+-..+. .. ....+
T Consensus 151 ~~~~~e~L~d~~~~~~~~~~~~vn~~dp~~~-~gIp--Vf~I~GNHD~~~~~~~~s~~~LL~~~g~v~l~g-~~-~~~d~ 225 (472)
T 4fbk_A 151 KPCELELLSDTSLTTGDTAVCNINYLDPNIN-VAIP--VFSIHGNHDDPSGDGRYSALDILQVTGLVNYFG-RV-PENDN 225 (472)
T ss_dssp CCCCCEEEEEC-----CCCSCSSSTTCTTBC-BSSC--EEECCCCCCSCCC--CCCHHHHHHHTTSCEECC-CC-SCSSS
T ss_pred Ccchheecchhhhhccccccccccccccccc-CCCc--EEEEecCCCCccccccccHHHHhccCCcEEEeC-Cc-ccCCc
Confidence 322322 111 1 1222 4567 999999999864111 111111100000 00 00012
Q ss_pred eEEeeCCcEEEECCEEEEEEe------hhHHHHhhhccccC--CC--CCChhHHHHHHHhcCCCCCCCCCCCcccccCcc
Q psy2623 554 STMATNPCRVQYCSQEILVVR------EELLSKMCRNCIKF--PE--EGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQY 623 (707)
Q Consensus 554 ~~f~SNPcRi~~~~qeIvifR------dDl~~~l~r~~i~~--p~--~~d~~~~lvktIL~Q~HL~Pl~~~~~Pi~w~~D 623 (707)
+ .-.|..++-.+.++.||= .++.+.+..+.+.. |. ..+...- -+++|.+- +.. +. +|-
T Consensus 226 i--~~~pv~l~kg~~~valyGl~y~~d~rl~r~~~e~~v~~~~p~~~~~~~~nI---lvlH~~~~-~~~----~~--~yi 293 (472)
T 4fbk_A 226 I--VVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNL---LTVHQNHS-AHT----PT--SYL 293 (472)
T ss_dssp E--EECCEEEEETTEEEEEEECCCCCHHHHHHHHHTTCEEEEEESTTGGGEEEE---EEEESCSC-CSS----TT--SSC
T ss_pred e--eEEEEEEEeCCceEEEEecCCCchhhhhhhhhhhhhhhhCcccccCCceEE---EEecCCcc-CCC----cc--ccC
Confidence 2 224667777778888865 22333333333321 21 0011111 12344322 111 11 121
Q ss_pred cccccCCCCcEEEecCCCCCceee----eCCeEEEcCCCCcc
Q psy2623 624 GALSLYPLPDLVILGDQLNAYTIQ----NTDCIFINPVFHNT 661 (707)
Q Consensus 624 ~aL~L~PlPd~liL~D~~~~f~~~----y~gc~vvNPG~~sF 661 (707)
..-.+..--|++++|+.|.++... ..|++++||| |-
T Consensus 294 pe~ll~~g~DyValGH~H~~~~~~~~~~~~g~~ivyPG--S~ 333 (472)
T 4fbk_A 294 PESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPG--ST 333 (472)
T ss_dssp CGGGSCTTCSEEEEESCCSCEEEEEEETTTTEEEEECC--CS
T ss_pred ChhhhhcCCCEEEecCcccceeeecccCCCCeEEEECC--Cc
Confidence 122233347999999999888754 3588999999 85
No 5
>4fbw_A DNA repair protein RAD32; DNA double-strand break repair, nuclease, hydrolase; HET: DNA; 2.20A {Schizosaccharomyces pombe} PDB: 4fcx_B*
Probab=94.02 E-value=0.15 Score=56.11 Aligned_cols=212 Identities=15% Similarity=0.121 Sum_probs=97.7
Q ss_pred CcceEEEEeCCCCCchh--------hchhhHHHhHhhhccccCCCCCCCCCCCccccccceEEeHHHHHHHhhhccCC--
Q psy2623 427 ENAMIVILSDVHLDNDK--------VRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIK-- 496 (707)
Q Consensus 427 ~~~~fVfvSD~~Lds~~--------~~~~L~~~l~~lf~~~~~~~p~aGNF~s~~y~sqeiv~~rd~f~~km~RN~i~-- 496 (707)
..-+|+.+||.|++... ..+.|...+..+-....+.+.++|+.......+.+.. ..+...++|+|.+
T Consensus 12 ~~mrilhiSDlHLg~~~~~~~~~~d~~~~l~~lv~~~~~~~~D~VliaGDLfd~~~p~~~~~---~~~~~~lr~~~~g~~ 88 (417)
T 4fbw_A 12 NTIRILISSDPHVGYGEKDPVRGNDSFVSFNEILEIARERDVDMILLGGDIFHDNKPSRKAL---YQALRSLRLNCLGDK 88 (417)
T ss_dssp TCEEEEEECCCCBTTTTTCTTTTTHHHHHHHHHHHHHHHTTCSEEEECSCCBSSSSCCHHHH---HHHHHHHHHHHBSSC
T ss_pred CCeEEEEEEcCCCCCcccccccchhHHHHHHHHHHHHHhcCCCEEEEcCccccCCCCCHHHH---HHHHHHHHHhcccCC
Confidence 34678999999999642 2233444222222222333456799887654433221 1223333444433
Q ss_pred ---CCCcCC-ccc-----c-------ccccCCcceeEEEEecCCCCCCCCCC-------cccCCCccHHHHHHhhccCCC
Q psy2623 497 ---FPEEGD-ISK-----H-------VSKNNGEKDIIFLIVPKIYVEGTVTS-------KVLSPALPKFITSEFQGFVPN 553 (707)
Q Consensus 497 ---fp~Lad-L~~-----~-------p~l~~~~s~~~fVfVPG~~Dp~~~~~-------~LPrpplP~~~~~~l~~~~~n 553 (707)
|+-|.+ ... | |++- .... +++|+|+||... .. .|+.+.+-..+. .. ....+
T Consensus 89 ~~~~e~L~d~~~~~~~~~~~~~n~~d~~~~-~gIp--V~~I~GNHD~~~-~~~~~s~~~lL~~~g~v~l~g-~~-~~~~~ 162 (417)
T 4fbw_A 89 PCELELLSDTSLTTGDTAVCNINYLDPNIN-VAIP--VFSIHGNHDDPS-GDGRYSALDILQVTGLVNYFG-RV-PENDN 162 (417)
T ss_dssp CCCCEECC------------CCGGGCTTBC-BSSC--EEECCCGGGC------CCCHHHHHHHTTSCEECC-CC-C---C
T ss_pred cccceeccchhhhccccccccccccccccc-CCCe--EEEEecCCCCcc-ccccccHHHHhccCCeEEEeC-Cc-ccCCc
Confidence 333332 111 1 1222 4567 999999999854 11 111111110000 00 00012
Q ss_pred eEEeeCCcEEEECCEEEEEEe-----h-hHHHHhhhccccC--CC--CCChhHHHHHHHhcCCCCCCCCCCCcccccCcc
Q psy2623 554 STMATNPCRVQYCSQEILVVR-----E-ELLSKMCRNCIKF--PE--EGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQY 623 (707)
Q Consensus 554 ~~f~SNPcRi~~~~qeIvifR-----d-Dl~~~l~r~~i~~--p~--~~d~~~~lvktIL~Q~HL~Pl~~~~~Pi~w~~D 623 (707)
+ .-.|..++-.+.++.||= + ++.+.+..+.+.. |. ..+...- -+++|.+-. .. +. +|.
T Consensus 163 i--~~~pv~l~~g~~~valyG~~~~~d~rl~r~~~~~~v~~~~p~~~~~~~~nI---lvlH~~~~~-~~----~~--~yi 230 (417)
T 4fbw_A 163 I--VVSPILLQKGFTKLALYGISNVRDERLYHSFRENKVKFLRPDLYRDEWFNL---LTVHQNHSA-HT----PT--SYL 230 (417)
T ss_dssp E--EECCEEEEETTEEEEEEEECCCCHHHHHHHHHTTCEEEEEESTTTTTSEEE---EEEESCSSC-SS----SS--SSC
T ss_pred e--eEEeEEEEecCceEEEEeccCCchhhhhhhhhhhhhhhcCcccccCCceEE---EEecCCccC-CC----Cc--ccC
Confidence 2 224677777778888865 2 2223233333321 21 0111111 123343221 11 00 111
Q ss_pred cccccCCCCcEEEecCCCCCceee----eCCeEEEcCCCCcc
Q psy2623 624 GALSLYPLPDLVILGDQLNAYTIQ----NTDCIFINPVFHNT 661 (707)
Q Consensus 624 ~aL~L~PlPd~liL~D~~~~f~~~----y~gc~vvNPG~~sF 661 (707)
..-.+.---|++++|+.|.++... ..|++++||| |-
T Consensus 231 p~~l~~~~~DyvalGH~H~~~~~~~~~~~~g~~i~~PG--S~ 270 (417)
T 4fbw_A 231 PESFIQDFYDFVLWGHEHECLIDGSYNPTQKFTVVQPG--ST 270 (417)
T ss_dssp CGGGSCTTCSEEEEESCCSCEEEEEEETTTTEEEEECC--CS
T ss_pred chhHhhcCCCEEEecCccccceeccccCCCCEEEEECC--CC
Confidence 112233346999999999888753 4689999999 85
No 6
>3t1i_A Double-strand break repair protein MRE11A; DNA repair, MRN complex, metallophosphatase, exonuclease, endonuclease, RAD50, NBS1, hydrolase; 3.00A {Homo sapiens}
Probab=93.24 E-value=0.83 Score=50.38 Aligned_cols=31 Identities=23% Similarity=0.244 Sum_probs=24.8
Q ss_pred CCcEEEecCCCCCceee----eCCeEEEcCCCCcccc
Q psy2623 631 LPDLVILGDQLNAYTIQ----NTDCIFINPVFHNTVR 663 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~----y~gc~vvNPG~~sF~~ 663 (707)
--|++++|+.+.++... ..|.+++||| |-..
T Consensus 257 ~~Dyv~lGH~H~~~~~~~~~~~~~~~i~yPG--S~~~ 291 (431)
T 3t1i_A 257 FIDLVIWGHEHECKIAPTKNEQQLFYISQPG--SSVV 291 (431)
T ss_dssp TCCEEEECSCCSCEEEEEECTTTCCEEEECC--CSSC
T ss_pred CCCEEEecccccccccccccCCCCEEEEeCC--CCcc
Confidence 35999999999887654 3588999999 8643
No 7
>3av0_A DNA double-strand break repair protein MRE11; DNA repair, calcineurin-like phosphoesterase, ABC transporte domain-like; HET: DNA AGS; 3.10A {Methanocaldococcus jannaschii} PDB: 3auz_A*
Probab=92.36 E-value=0.69 Score=49.72 Aligned_cols=30 Identities=17% Similarity=-0.004 Sum_probs=25.5
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCccc
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTV 662 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~ 662 (707)
-.|++++|+.+.+......|..++||| |-.
T Consensus 198 ~~d~v~~GH~H~~~~~~~~~~~i~ypG--S~~ 227 (386)
T 3av0_A 198 KFSYYALGHIHKRILERFNDGILAYSG--STE 227 (386)
T ss_dssp CCSEEEECSCCSCEEEECSSSEEEECC--CSS
T ss_pred hCCeEEccCCCCCccccCCCceEEECC--ccc
Confidence 389999999998866667899999999 763
No 8
>3ib7_A ICC protein; metallophosphoesterase, alpha-beta fold, swapped-dimer, HYDR; HET: BTB; 1.60A {Mycobacterium tuberculosis} PDB: 3ib8_A* 2hy1_A 2hyp_A 2hyo_A
Probab=90.74 E-value=2.6 Score=43.10 Aligned_cols=30 Identities=7% Similarity=-0.116 Sum_probs=26.6
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCccc
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTV 662 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~ 662 (707)
-+|+++.|+.|.+....++|+.++||| +-.
T Consensus 211 ~v~~v~~GH~H~~~~~~~~g~~~~~~g--s~~ 240 (330)
T 3ib7_A 211 DVRAILAGHLHYSTNATFVGIPVSVAS--ATC 240 (330)
T ss_dssp SEEEEEECSSSSCEEEEETTEEEEECC--CSS
T ss_pred CceEEEECCCCCcccceECCEEEEecC--cce
Confidence 578999999998888889999999999 764
No 9
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=86.77 E-value=0.55 Score=49.22 Aligned_cols=29 Identities=24% Similarity=0.262 Sum_probs=23.8
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCccc
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTV 662 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~ 662 (707)
-.|++++|+.+.+.... .++.++||| |-.
T Consensus 220 ~~d~v~~GH~H~~~~~~-~~~~i~y~G--S~~ 248 (336)
T 2q8u_A 220 VVDYAALGHIHSFREIQ-KQPLTIYPG--SLI 248 (336)
T ss_dssp TSSEEEEESCSSCEEEE-ETTEEEECC--CSS
T ss_pred cCCEEEEccccCceEeC-CCccEEECC--CCc
Confidence 67999999999887664 457899999 763
No 10
>2kkn_A Uncharacterized protein; protein phosphatase 2A homologue, structural genomics, PSI- 2, protein structure initiative; NMR {Thermotoga maritima}
Probab=85.89 E-value=1.2 Score=42.63 Aligned_cols=44 Identities=14% Similarity=0.224 Sum_probs=35.9
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCcccccCeeEEEEEeccccceE
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSGVW 680 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~~~~~f~~y~~~~~~~~~ 680 (707)
-+|+++.|+.+.++....+|+.++||| |... .+|..++ +..|.|
T Consensus 128 ~~d~vi~GHtH~~~~~~~~~~~~iNpG--S~~~--~sy~il~--~~~~~~ 171 (178)
T 2kkn_A 128 KPQVILFGHTHEPEDTVKAGVRFLNPG--SLAE--GSYAVLE--LDGGEV 171 (178)
T ss_dssp CCSEEECCSCSSCCEEEETTEEEECCC--CTTT--TEEEEEE--EETTEE
T ss_pred CCCEEEECccCCCCeEEeCCEEEEECC--CCCC--CeEEEEE--ECCCEE
Confidence 469999999999988888999999999 9864 6777777 455544
No 11
>3tho_B Exonuclease, putative; adenosine triphosphate, bacterial proteins, DNA breaks, DOUB stranded, DNA repair, DNA repair enzymes; HET: ADP; 2.61A {Thermotoga maritima} PDB: 3qg5_C
Probab=82.93 E-value=6.8 Score=41.90 Aligned_cols=30 Identities=23% Similarity=0.258 Sum_probs=23.1
Q ss_pred CCCcEEEecCCCCCceeeeCCeEEEcCCCCccc
Q psy2623 630 PLPDLVILGDQLNAYTIQNTDCIFINPVFHNTV 662 (707)
Q Consensus 630 PlPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~ 662 (707)
.-.|.+++||.|.+..+. .+..+.||| |-.
T Consensus 201 ~~~dyvalGH~H~~q~~~-~~~~i~y~G--S~~ 230 (379)
T 3tho_B 201 SVVDYAALGHIHSFREIQ-KQPLTIYPG--SLI 230 (379)
T ss_dssp TTSSEEEEESCSSCEEEE-ETTEEEECC--CSS
T ss_pred cCCCEEEcccccCCeEeC-CCCcEEecC--CCC
Confidence 468999999999885432 346899999 764
No 12
>3flo_A DNA polymerase alpha subunit B; protein-protein complex, phosphoesterase fold, OB fold, zinc motif, DNA replication, nucleus; HET: DNA; 2.50A {Saccharomyces cerevisiae}
Probab=80.33 E-value=0.92 Score=50.39 Aligned_cols=96 Identities=9% Similarity=0.017 Sum_probs=65.2
Q ss_pred hhcCCcceEEEE---eCCC-CCchhhchhhHHHhHhhhccccC-CCCCCCCCCCccccccceEEeHHHHHHHhhhccCCC
Q psy2623 423 EKNNENAMIVIL---SDVH-LDNDKVRNNLCEFITSEFQGFVP-NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKF 497 (707)
Q Consensus 423 e~~~~~~~fVfv---SD~~-Lds~~~~~~L~~~l~~lf~~~~~-~~p~aGNF~s~~y~sqeiv~~rd~f~~km~RN~i~f 497 (707)
+++...+++|++ .|++ ....+|+++|++ -..+... ++.+++|||++.++..++.+.+.|+..+|+ +..+.
T Consensus 229 ~~l~~~t~VVlVPS~rD~~~~~~v~PQPpf~~----k~l~l~k~nv~~~sNPc~~~in~v~igvss~Dil~~L~-e~~~~ 303 (460)
T 3flo_A 229 KTISPHIQTVLIPSTKDAISNHAAYPQASLIR----KALQLPKRNFKCMANPSSFQINEIYFGCSNVDTFKDLK-EVIKG 303 (460)
T ss_dssp TTSCTTSEEEEECCTTBTTCSCCSBSBCCCCT----TTTTCCTTTEEECCBSEEEEETTEEEEECCSCHHHHCC-CEEEC
T ss_pred HhccCCCEEEEeCCcccccCCCCCcCCCCCCh----hhhcCCcccEEEeCCCEEEEECCEEEEEEcHHHHHHHH-HhhcC
Confidence 345678999999 7886 467899999987 2223333 566789999999999999999999998885 44444
Q ss_pred CC--cCC-cccc-ccccCCcceeEEEEecCCCC
Q psy2623 498 PE--EGD-ISKH-VSKNNGEKDIIFLIVPKIYV 526 (707)
Q Consensus 498 p~--Lad-L~~~-p~l~~~~s~~~fVfVPG~~D 526 (707)
+. -.+ +.+. ..++ +|.| |..+.++.+
T Consensus 304 ~~~~~~dr~~Rl~~hlL-~Qr~--~yPL~P~~~ 333 (460)
T 3flo_A 304 GTTSSRYRLDRVSEHIL-QQRR--YYPIFPGSI 333 (460)
T ss_dssp HHHHHSCHHHHHHHHHH-HHTB--SCCCSSCCE
T ss_pred CCCccccHHHHHHHHHh-hcCc--ccCcCCCcc
Confidence 22 133 4433 2245 5556 665544443
No 13
>1z2w_A Vacuolar protein sorting 29; VPS29, retromer, phosphatase, manganese, protein transport; 2.00A {Mus musculus} SCOP: d.159.1.7 PDB: 1z2x_A 3lh6_A 3lh7_A 3psn_A 3pso_A 1w24_A 2r17_A
Probab=73.25 E-value=5.8 Score=37.89 Aligned_cols=40 Identities=15% Similarity=0.136 Sum_probs=32.2
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCcccc--------cCeeEEEEE
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVR--------NAFEVEKEH 672 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~--------~~~~f~~y~ 672 (707)
-+|+++.|+.+.++...++|+.++||| |... ...+|..++
T Consensus 117 ~~d~vi~GHtH~~~~~~~~~~~~inpG--S~~~~~~~~~~~~~~~y~il~ 164 (192)
T 1z2w_A 117 DVDILISGHTHKFEAFEHENKFYINPG--SATGAYNALETNIIPSFVLMD 164 (192)
T ss_dssp SSSEEECCSSCCCEEEEETTEEEEECC--CTTCCCCSSCSCCCCEEEEEE
T ss_pred CCCEEEECCcCcCccEeECCEEEEECC--cccccCCCCCcCCCCcEEEEE
Confidence 368999999999988888999999999 8742 134677766
No 14
>2a22_A Vacuolar protein sorting 29; alpha-beta-BETA-alpha sandwich, structural genomics, structural genomics consortium, SGC, protein transport; 2.20A {Cryptosporidium parvum} SCOP: d.159.1.7
Probab=70.72 E-value=7.3 Score=38.07 Aligned_cols=45 Identities=11% Similarity=0.148 Sum_probs=35.0
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCcccc--------cCeeEEEEEeccccce
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVR--------NAFEVEKEHHAVSSGV 679 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~--------~~~~f~~y~~~~~~~~ 679 (707)
-+|+++.|+.+.++....+|+.++||| |... ...+|..++ +..|.
T Consensus 141 ~~d~vl~GHtH~~~~~~~~~~~~inpG--S~~~~~~~~~~~~~~~y~il~--i~~~~ 193 (215)
T 2a22_A 141 DCDILVTGHTHKLRVFEKNGKLFLNPG--TATGAFSALTPDAPPSFMLMA--LQGNK 193 (215)
T ss_dssp TCSEEEECSSCCCEEEEETTEEEEECC--CSSCCCCTTSTTCCCEEEEEE--EETTE
T ss_pred CCCEEEECCcCCCccEeeCCEEEEECC--cccccCCCCCCCCCCcEEEEE--EeCCc
Confidence 358999999999988888999999999 8743 135777777 44444
No 15
>3ck2_A Conserved uncharacterized protein (predicted phosphoesterase COG0622); structural genomics, predicted phosphodiesterase, PSI-2; HET: SRT; 2.30A {Streptococcus pneumoniae} SCOP: d.159.1.7
Probab=69.57 E-value=6.2 Score=37.05 Aligned_cols=48 Identities=8% Similarity=0.169 Sum_probs=36.3
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCccccc-----CeeEEEEEeccccceEEE
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRN-----AFEVEKEHHAVSSGVWLI 682 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~~-----~~~f~~y~~~~~~~~~~~ 682 (707)
-+|+++.|+.+.++....+|+.++||| |.... .-+|..++ +..|.|-+
T Consensus 105 ~~d~vi~GHtH~~~~~~~~~~~~inpG--s~~~~~~~~~~~~y~il~--~~~~~~~v 157 (176)
T 3ck2_A 105 EAAICLYGHLHVPSAWLEGKILFLNPG--SISQPRGTIRECLYARVE--IDDSYFKV 157 (176)
T ss_dssp TCSEEECCSSCCEEEEEETTEEEEEEC--CSSSCCTTCCSCCEEEEE--ECSSEEEE
T ss_pred CCCEEEECCcCCCCcEEECCEEEEECC--CCCcCCCCCCCCeEEEEE--EcCCEEEE
Confidence 358999999999988888999999999 87521 25677777 55555433
No 16
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=65.48 E-value=10 Score=37.17 Aligned_cols=41 Identities=15% Similarity=0.117 Sum_probs=31.9
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCcccccCeeEEEEEeccccc
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEHHAVSSG 678 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~~~~~f~~y~~~~~~~ 678 (707)
-||+++.|+.+ +....+.++.++||| |...+ +|..++ +..|
T Consensus 212 ~~~~vl~GH~H-~~~~~~~~~~~in~G--s~~~g--~~~ii~--~~~~ 252 (260)
T 2yvt_A 212 NPEVAIVGHVG-KGHELVGNTIVVNPG--EFEEG--RYAFLD--LTQH 252 (260)
T ss_dssp CCSEEEECSSC-CEEEEETTEEEEECC--BGGGT--EEEEEE--TTTT
T ss_pred CCCEEEECCcc-CCcEEeCCEEEEeCC--CCCCC--ceEEEE--EcCC
Confidence 58999999999 655677899999999 98753 666666 4444
No 17
>1su1_A Hypothetical protein YFCE; structural genomics, phosphoesterase, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 2.25A {Escherichia coli} SCOP: d.159.1.7
Probab=64.53 E-value=7.8 Score=37.74 Aligned_cols=40 Identities=15% Similarity=0.130 Sum_probs=32.8
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCcccc----cCeeEEEEE
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVR----NAFEVEKEH 672 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~----~~~~f~~y~ 672 (707)
.+|+++.|+.+.++....+|+.++||| |... +..+|..++
T Consensus 143 ~~d~vi~GHtH~~~~~~~~~~~~iNpG--s~~~pr~~~~~sy~il~ 186 (208)
T 1su1_A 143 QNDVLVYGHTHLPVAEQRGEIFHFNPG--SVSIPKGGNPASYGMLD 186 (208)
T ss_dssp TTCEEECCSSCCCEEEEETTEEEEECC--CSSCCCTTCCCEEEEEE
T ss_pred CCCEEEECCcccCccEEeCCEEEEECC--CCcCCCCCCCCEEEEEE
Confidence 349999999999988888999999999 8862 245777777
No 18
>2kct_A Cytochrome C-type biogenesis protein CCME; solution structure, heme chaperone, cytochrome C biogenesis, OB-fold domain, NESG, PSI-2; NMR {Desulfovibrio vulgaris str}
Probab=60.36 E-value=66 Score=27.87 Aligned_cols=61 Identities=20% Similarity=0.310 Sum_probs=43.4
Q ss_pred cceEEEEEEeeec---c--CC---cEEeecC---CceEEEEeeccccCCCccCcCeEEEEEeEec--CceEEEEee
Q psy2623 322 NHKTVVLGMISQL---K--EN---RYFLEDP---TGIVQLDLSQTSYHPGLYTENCIVLVEGHYK--DQILHVDAL 384 (707)
Q Consensus 322 ~~~~vvLG~Lsq~---~--~G---~~~LED~---tg~i~Ldls~a~~~~g~f~p~~iVLveG~f~--s~~f~v~~i 384 (707)
++++-+-||+..- + +| .|.|.|. ...+++...- .-..+|.+|.=|+++|.+. +++|.++++
T Consensus 8 ~~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~~~v~V~Y~G--ilPDlFrEGqgVV~~G~l~~~~g~F~A~ev 81 (94)
T 2kct_A 8 LHTVRLFGTVAADGLTMLDGAPGVRFRLEDKDNTSKTVWVLYKG--AVPDTFKPGVEVIIEGGLAPGEDTFKARTL 81 (94)
T ss_dssp TCCEEEEEEECSTTCEECTTSSEEEEEEECSSCTTCEEEEEEES--CCCTTCCTTCEEEEEEEECTTCSEEEEEEE
T ss_pred CCeEEEeeEEeCCeEEecCCCCEEEEEEEcCCCCCcEEEEEECC--CCCccccCCCeEEEEEEEeCCCCEEEEeEE
Confidence 3578888988432 1 23 3677776 5566655443 3345689999999999997 689999987
No 19
>4gop_B Putative uncharacterized protein; OB fold, ssDNA binding, DNA binding protein-DNA complex; HET: DNA; 3.10A {Ustilago maydis}
Probab=54.66 E-value=31 Score=31.40 Aligned_cols=53 Identities=23% Similarity=0.295 Sum_probs=41.0
Q ss_pred ceEEEEEEeeeccCCc----EEeecCCceEEEEeecccc-----CCCccCcCeEEEEEeEec
Q psy2623 323 HKTVVLGMISQLKENR----YFLEDPTGIVQLDLSQTSY-----HPGLYTENCIVLVEGHYK 375 (707)
Q Consensus 323 ~~~vvLG~Lsq~~~G~----~~LED~tg~i~Ldls~a~~-----~~g~f~p~~iVLveG~f~ 375 (707)
..+.++|.+...+++. |.|||-||.+....=...- ....+.+|.+|-+.|...
T Consensus 37 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~I~~~~W~~~~~~~~~~~~~~~~g~yVrV~G~v~ 98 (136)
T 4gop_B 37 GQLTFVAVVRNISRNATNVAYSVEDGTGQIEVRQWLDSSSDDSSKASEIRNNVYVRVLGTLK 98 (136)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSCEEEEEEECC--------CCSCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEEEEEecCCeEEEEEECCCCCEEEEEecccCCcccccccccCCCCEEEEEEEEE
Confidence 5899999998887653 8999999998877654321 234579999999999985
No 20
>1sr3_A APO-CCME; OB fold, beta barrel, flexible C-terminal domain, chaperone; NMR {Escherichia coli} SCOP: b.40.9.1
Probab=53.41 E-value=48 Score=30.70 Aligned_cols=62 Identities=21% Similarity=0.337 Sum_probs=45.2
Q ss_pred CcceEEEEEEeeec-----cCC---cEEeecCCceEEEEeeccccCCCccCcCeEEEEEeEec-CceEEEEee
Q psy2623 321 VNHKTVVLGMISQL-----KEN---RYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDAL 384 (707)
Q Consensus 321 ~~~~~vvLG~Lsq~-----~~G---~~~LED~tg~i~Ldls~a~~~~g~f~p~~iVLveG~f~-s~~f~v~~i 384 (707)
.++++-|-||+... .++ .|.|.|....+.+.-.. .-..+|.+|.=|+++|.+. +++|+++++
T Consensus 27 ~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~v~V~Y~G--ilPDlFrEGqgVVa~G~l~~~g~F~A~eV 97 (136)
T 1sr3_A 27 VGQRLRVGGMVMPGSVQRDPNSLKVTFTIYDAEGSVDVSYEG--ILPDLFREGQGVVVQGELEKGNHILAKEV 97 (136)
T ss_dssp TTSEEEEEEEECTTTCEECSSSSEEEEEEECSSCEEEEEEES--CCCTTCCTTSEEEEEEEECSSSEEEESSC
T ss_pred CCCEEEEeeEEeCCcEEEcCCCCEEEEEEEeCCcEEEEEECC--CCCccccCCCeEEEEEEECCCCeEEEEEE
Confidence 44689999998532 123 37777876666655443 3356789999999999997 799999987
No 21
>1j6q_A Cytochrome C maturation protein E; all-beta protein, heme delivery,cytochrome C maturation, OB- (oligonucleotide binding)fold; NMR {Shewanella putrefaciens} SCOP: b.40.9.1 PDB: 1lm0_A
Probab=52.79 E-value=61 Score=29.96 Aligned_cols=63 Identities=17% Similarity=0.354 Sum_probs=45.0
Q ss_pred CCcceEEEEEEeee---cc--CC---cEEeec-CCceEEEEeeccccCCCccCcCeEEEEEeEec-CceEEEEee
Q psy2623 320 NVNHKTVVLGMISQ---LK--EN---RYFLED-PTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHVDAL 384 (707)
Q Consensus 320 ~~~~~~vvLG~Lsq---~~--~G---~~~LED-~tg~i~Ldls~a~~~~g~f~p~~iVLveG~f~-s~~f~v~~i 384 (707)
..++++-|-||+.. .+ ++ .|.|.| ....+++.-. +.-..+|.+|.=|+++|.+. +++|+++++
T Consensus 30 ~~g~~iRvgG~V~~GSv~r~~~~~~v~F~vtD~~~~~v~V~Y~--GilPDlFrEGqgVVa~G~l~~~g~F~A~eV 102 (136)
T 1j6q_A 30 EAGQRIRVGGMVTVGSMVRDPNSLHVQFAVHDSLGGEILVTYD--DLLPDLFREGQGIVAQGVLGEDGKLAATEV 102 (136)
T ss_dssp CTTCEEEEEEEECTTCCEECTTSSCEEEEEECTTCCCEEEEEC--SCCTTSCCSSSEEEEEEEECSTTSEEEEEE
T ss_pred CCCCEEEEeEEEeCCcEEecCCCCEEEEEEEcCCCCEEEEEEC--CCCCccccCCCeEEEEEEECCCCeEEEEEE
Confidence 34568999999942 12 23 377878 5555555443 33346689999999999997 799999998
No 22
>1nnw_A Hypothetical protein; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics, secsg; 1.90A {Pyrococcus furiosus} SCOP: d.159.1.5 PDB: 2gju_A
Probab=51.07 E-value=22 Score=34.92 Aligned_cols=41 Identities=5% Similarity=-0.053 Sum_probs=33.3
Q ss_pred CCCcEEEecCCCCCceeeeCCeEEEcCCCCcccc-----cCeeEEEEE
Q psy2623 630 PLPDLVILGDQLNAYTIQNTDCIFINPVFHNTVR-----NAFEVEKEH 672 (707)
Q Consensus 630 PlPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~-----~~~~f~~y~ 672 (707)
|-+++++-|+.+.++...++|+.++||| |... ...+|..++
T Consensus 166 ~~~~~vi~GHtH~~~~~~~~~~~~in~G--s~~~~~~~~~~~~y~il~ 211 (252)
T 1nnw_A 166 KDYEMLIVASPMYPVDAMTRYGRVVCPG--SVGFPPGKEHKATFALVD 211 (252)
T ss_dssp TTSSEEEESTTCSEEEEEETTEEEEEEC--CSSSCSSSSCCEEEEEEE
T ss_pred CCCCEEEECCccccceEecCCeEEEECC--CccCCCCCCCcceEEEEE
Confidence 3569999999999998889999999999 8742 145777777
No 23
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=49.35 E-value=6 Score=37.77 Aligned_cols=37 Identities=14% Similarity=-0.029 Sum_probs=28.8
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCcccccCeeEEEEE
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEH 672 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~~~~~f~~y~ 672 (707)
-||+++.|+.+ +......++.++||| |+.+ -+|..++
T Consensus 180 ~~~~~~~GH~H-~~~~~~~~~~~in~G--s~~~--~~~~i~~ 216 (228)
T 1uf3_A 180 NPLLVLVAGKG-QKHEMLGASWVVVPG--DLSE--GEYSLLD 216 (228)
T ss_dssp CCSEEEECCSS-CEEEEETTEEEEECC--BGGG--TEEEEEE
T ss_pred CCCEEEEcccc-cCccccCCceEEEec--ccCC--CceEEEE
Confidence 48999999999 555567899999999 9863 3555555
No 24
>1uf3_A Hypothetical protein TT1561; metallo-dependent phosphatases, structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.10A {Thermus thermophilus} SCOP: d.159.1.6
Probab=48.14 E-value=16 Score=34.73 Aligned_cols=39 Identities=15% Similarity=0.025 Sum_probs=21.7
Q ss_pred ceEEEEeCCCCCchhhchhhHHHhHhhhcc-ccCCCCCCCCCCCc
Q psy2623 429 AMIVILSDVHLDNDKVRNNLCEFITSEFQG-FVPNSTMATNPCRV 472 (707)
Q Consensus 429 ~~fVfvSD~~Lds~~~~~~L~~~l~~lf~~-~~~~~p~aGNF~s~ 472 (707)
-+++++||+|++.. .+...+. .... ..+...++|+.+..
T Consensus 6 mri~~iSD~H~~~~----~~~~~~~-~~~~~~~D~vi~~GDl~~~ 45 (228)
T 1uf3_A 6 RYILATSNPMGDLE----ALEKFVK-LAPDTGADAIALIGNLMPK 45 (228)
T ss_dssp CEEEEEECCTTCHH----HHHHHHT-HHHHHTCSEEEEESCSSCT
T ss_pred EEEEEEeeccCCHH----HHHHHHH-HHhhcCCCEEEECCCCCCC
Confidence 46899999998743 2333111 1221 22334556998853
No 25
>1g5b_A Serine/threonine protein phosphatase; bacteriophage lambda, Ser/Thr protein phosphatase, ppase, manganese, sulfate, viral protein; 2.15A {Enterobacteria phage lambda} SCOP: d.159.1.3
Probab=45.12 E-value=17 Score=35.21 Aligned_cols=40 Identities=10% Similarity=0.165 Sum_probs=32.3
Q ss_pred CCcEEEecCCCCCceeeeCCeEEEcCCCCcccccCeeEEEEE
Q psy2623 631 LPDLVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEVEKEH 672 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~y~gc~vvNPG~~sF~~~~~~f~~y~ 672 (707)
-++++|-|+++.+.....+|+.++||| |...+..+.....
T Consensus 178 ~~~~vv~GHth~~~~~~~~~~~~in~G--s~~gg~lt~~~l~ 217 (221)
T 1g5b_A 178 GADTFIFGHTPAVKPLKFANQMYIDTG--AVFCGNLTLIQVQ 217 (221)
T ss_dssp TSSEEEECSSCCSSCEEETTEEECCCC--HHHHSCCCEEEEE
T ss_pred CCCEEEECCCCCccceeeCCEEEEECC--CCcCCceEEEEec
Confidence 468999999998777788999999999 9876666655543
No 26
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=44.62 E-value=24 Score=35.72 Aligned_cols=40 Identities=10% Similarity=0.040 Sum_probs=31.7
Q ss_pred CCcEEEecCCCCCceee-eCCeEEEcCCCCccccc-----------CeeEEEEE
Q psy2623 631 LPDLVILGDQLNAYTIQ-NTDCIFINPVFHNTVRN-----------AFEVEKEH 672 (707)
Q Consensus 631 lPd~liL~D~~~~f~~~-y~gc~vvNPG~~sF~~~-----------~~~f~~y~ 672 (707)
-.|+++.|+++.++... ..|..++||| |-... .-+|..++
T Consensus 164 ~~d~~i~GHtH~~~~~~~~~~~~~iNpG--Svg~pr~~~~~~~~~~~asyaild 215 (270)
T 3qfm_A 164 PCDIAVYGHIHQQLLRYGTGGQLIVNPG--SIGQPFFLDAQLRKDLRAQYMILE 215 (270)
T ss_dssp TCSEEECCSSCSEEEEECTTSCEEEEEC--CSSSCCCSSTTGGGCCCEEEEEEE
T ss_pred CCCEEEECCcCchHheeccCCEEEEECC--CccCCCCCCccccCCCCCEEEEEE
Confidence 35899999999988766 4799999999 76532 35788887
No 27
>3mxn_B RECQ-mediated genome instability protein 2; bloom syndrome, helicase, RMI, topoisomerase, replication PR replication; 1.55A {Homo sapiens} PDB: 4day_B 3nbh_B
Probab=44.57 E-value=60 Score=30.44 Aligned_cols=53 Identities=15% Similarity=0.107 Sum_probs=41.5
Q ss_pred ceEEEEEEeeeccCCcEEeecCCceEEEEeeccccC-CCccCcCeEEEEEeEec
Q psy2623 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYH-PGLYTENCIVLVEGHYK 375 (707)
Q Consensus 323 ~~~vvLG~Lsq~~~G~~~LED~tg~i~Ldls~a~~~-~g~f~p~~iVLveG~f~ 375 (707)
+.+++=|.+-..+.|++-|+|.+|...+.-...... ...+.+|+.|++=|.+.
T Consensus 59 s~VWmQG~VV~~~~g~~~LdDgTG~~~v~g~~~vp~g~p~l~~G~YVMV~G~v~ 112 (150)
T 3mxn_B 59 AAVWMQGRVVMADRGEARLRDPSGDFSVRGLERVPRGRPCLVPGKYVMVMGVVQ 112 (150)
T ss_dssp SEEEEEEEEEEEETTEEEEEETTEEEEEECGGGSCCCSCCCSTTCEEEEEEEEE
T ss_pred EEEEEEeEEEEeCCCeEEEECCCceEEEeeccccCCCCcccCCCCEEEEEEEEE
Confidence 588999999888889999999999988755433322 23357999999999985
No 28
>2yvt_A Hypothetical protein AQ_1956; structural genomics, unknown function, NPPSFA, national PROJ protein structural and functional analyses; 1.60A {Aquifex aeolicus} SCOP: d.159.1.6
Probab=43.57 E-value=10 Score=37.23 Aligned_cols=40 Identities=8% Similarity=-0.083 Sum_probs=23.1
Q ss_pred ceEEEEeCCCCCchhhchhhHHHhHhhhccccCCCCCCCCCCCc
Q psy2623 429 AMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRV 472 (707)
Q Consensus 429 ~~fVfvSD~~Lds~~~~~~L~~~l~~lf~~~~~~~p~aGNF~s~ 472 (707)
-+|+++||+|++.. .+...+..+-....+...++|+++..
T Consensus 6 mri~~iSDlH~~~~----~~~~~l~~~~~~~~D~vi~~GDl~~~ 45 (260)
T 2yvt_A 6 RKVLAIKNFKERFD----LLPKLKGVIAEKQPDILVVVGNILKN 45 (260)
T ss_dssp CEEEEEECCTTCGG----GHHHHHHHHHHHCCSEEEEESCCCCC
T ss_pred EEEEEEeecCCChH----HHHHHHHHHHhcCCCEEEECCCCCCc
Confidence 46899999998753 23332222212223335567999864
No 29
>3kdf_D Replication protein A 32 kDa subunit; wheat GERM cell free, protein complex, center for eukaryotic structural genomics, PSI; HET: MSE; 1.98A {Homo sapiens} SCOP: b.40.4.3 PDB: 2pqa_A 1quq_A 1l1o_B
Probab=41.56 E-value=76 Score=28.54 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=39.9
Q ss_pred ceEEEEEEeeeccCC----cEEeecCCc-eEEEEeeccc----cCCCccCcCeEEEEEeEec
Q psy2623 323 HKTVVLGMISQLKEN----RYFLEDPTG-IVQLDLSQTS----YHPGLYTENCIVLVEGHYK 375 (707)
Q Consensus 323 ~~~vvLG~Lsq~~~G----~~~LED~tg-~i~Ldls~a~----~~~g~f~p~~iVLveG~f~ 375 (707)
..+.++|.+...+++ .|-|||-|| .+....=... .....+.+|.+|-+.|...
T Consensus 32 ~~V~iVG~V~~~~~~~~~~~~~ldD~TG~~I~~~~W~~~~~~~~~~~~~~~g~yVrV~G~l~ 93 (132)
T 3kdf_D 32 SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLR 93 (132)
T ss_dssp CEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEEC---------CCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEEEEEEcCCeEEEEEECCCCCEEEEEEEccCCCcccccccccCCCEEEEEEEEE
Confidence 488999999888765 488999999 8887765432 1234579999999999986
No 30
>3d03_A Phosphohydrolase; glycerophosphodiesterase, metallohydrolase, phosphatase, metal ION; 1.90A {Enterobacter aerogenes} SCOP: d.159.1.11 PDB: 2zoa_A 2zo9_B 2dxn_A 2dxl_A
Probab=40.12 E-value=18 Score=35.49 Aligned_cols=70 Identities=10% Similarity=0.080 Sum_probs=0.0
Q ss_pred eEEEEeCCCCCc--------hhhchhhHHHhHhhhcc--ccCCCCCCCCCCCccccccceEEeHHHHHHHhhhccCCCCC
Q psy2623 430 MIVILSDVHLDN--------DKVRNNLCEFITSEFQG--FVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE 499 (707)
Q Consensus 430 ~fVfvSD~~Lds--------~~~~~~L~~~l~~lf~~--~~~~~p~aGNF~s~~y~sqeiv~~rd~f~~km~RN~i~fp~ 499 (707)
+|+++||+|++. ..+.+.|...+..+-+. ..+...++|+.+.... .+.+. .
T Consensus 2 ri~~iSD~H~~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~d~vi~~GDl~~~~~--------~~~~~-----------~ 62 (274)
T 3d03_A 2 LLAHISDTHFRSRGEKLYGFIDVNAANADVVSQLNALRERPDAVVVSGDIVNCGR--------PEEYQ-----------V 62 (274)
T ss_dssp EEEEECCCCBCSTTCCBTTTBCHHHHHHHHHHHHHTCSSCCSEEEEESCCBSSCC--------HHHHH-----------H
T ss_pred EEEEEecCCcCCCCcccccccCHHHHHHHHHHHHHhcCCCCCEEEECCCCCCCCC--------HHHHH-----------H
Q ss_pred cCC-ccccccccCCcceeEEEEecCCCC
Q psy2623 500 EGD-ISKHVSKNNGEKDIIFLIVPKIYV 526 (707)
Q Consensus 500 Lad-L~~~p~l~~~~s~~~fVfVPG~~D 526 (707)
+.+ +.+. ..- ++.||||||
T Consensus 63 ~~~~l~~l-~~p-------~~~v~GNHD 82 (274)
T 3d03_A 63 ARQILGSL-NYP-------LYLIPGNHD 82 (274)
T ss_dssp HHHHHTTC-SSC-------EEEECCTTS
T ss_pred HHHHHHhc-CCC-------EEEECCCCC
No 31
>3e0j_A DNA polymerase subunit delta-2; DNA polymerase delta, P66 subunit, P50 subunit, human, DNA replication, DNA-directed DNA polymerase; HET: DNA; 3.00A {Homo sapiens}
Probab=37.75 E-value=19 Score=40.17 Aligned_cols=80 Identities=18% Similarity=0.173 Sum_probs=39.9
Q ss_pred CCCCCC-CccCcccCceeeccCCcccCCChHHHHHHHHHHHHHHHHHHhhccC--CCCCCCCCCccccceeeeecccccc
Q psy2623 39 AFDIPQ-FDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSL--FNNINPNADSVKLDWVEYLMSLTNV 115 (707)
Q Consensus 39 AF~~Pr-~~Yd~~rK~F~~~~~~~sl~~~a~~k~~~fr~RY~li~qR~lRne~--F~~~~~~~~~~~l~~i~~l~~~~g~ 115 (707)
+|+-.. ..|+.-...|.... . .=.+.-+++|+.|+..+|.|+.++-. +.+ -..+..|+.+-+
T Consensus 30 ~~~R~~~~~y~~~~~~F~l~~--~---~y~~QY~~iY~~RL~~Lr~~l~~~a~~kw~~---------~~~i~klldl~~- 94 (476)
T 3e0j_A 30 TFARVPVATYTNSSQPFRLGE--R---SFSRQYAHIYATRLIQMRPFLENRAQQHWGS---------GVGVKKLCELQP- 94 (476)
T ss_dssp CEECCCTTCEEECCGGGCC-----------------CHHHHHHHHHHHHHHHHHHSCS---------CCCBCCSSSCCT-
T ss_pred ccccccCccccccccccccCC--C---ChhHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CccchHhhcccC-
Confidence 444444 77777666776531 1 11356678999999999999876642 110 011333433321
Q ss_pred CCcEEEEeeeeccccccc
Q psy2623 116 NHKTVVLGMISQLKENIT 133 (707)
Q Consensus 116 ~g~~~vlGmL~q~~~~~~ 133 (707)
.+.-+|.|+|-+..+.+|
T Consensus 95 ge~c~viGTvyk~m~lKP 112 (476)
T 3e0j_A 95 EEKCCVVGTLFKAMPLQP 112 (476)
T ss_dssp TCCEEEEEEEEEEC----
T ss_pred CCEEEEEEEEEecccCCC
Confidence 247999999987655553
No 32
>1nnx_A Protein YGIW; structural genomics, hypothetical protein, OB-fold, structure 2 function project, S2F, unknown function; 1.45A {Escherichia coli} SCOP: b.40.10.1
Probab=36.27 E-value=1e+02 Score=27.32 Aligned_cols=67 Identities=18% Similarity=0.261 Sum_probs=51.0
Q ss_pred chHHHHhhcccCCcceEEEEEEeeecc-CCcEEeecCCceEEEEeeccccCCCccCcCeEEEEEeEecC
Q psy2623 309 LDWVEYLMSLTNVNHKTVVLGMISQLK-ENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKD 376 (707)
Q Consensus 309 lt~I~~Llg~~~~~~~~vvLG~Lsq~~-~G~~~LED~tg~i~Ldls~a~~~~g~f~p~~iVLveG~f~s 376 (707)
.++++..+. ...+..+.+=|-|.+.- +.+|...|.+|.|.+.+....+..--+.|+.-|=+.|++..
T Consensus 25 ~~TV~~a~~-~~Dd~~V~L~G~Iv~~~~~d~Y~F~D~TG~I~VeId~~~w~g~~v~p~~~Vri~GevDk 92 (109)
T 1nnx_A 25 VTTVESAKS-LRDDTWVTLRGNIVERISDDLYVFKDASGTINVDIDHKRWNGVTVTPKDTVEIQGEVDK 92 (109)
T ss_dssp CCCHHHHTT-SCSSEEEEEEEEEEEEEETTEEEEEETTEEEEEECCGGGSTTCCCCTTSCEEEEEEEEE
T ss_pred eEeHHHHhh-CcCCCeEEEEEEEEEEeCCCeEEEECCCccEEEEEChhhcCCcccCCCCEEEEEEEECC
Confidence 456666653 33456888889997665 56788899999999999987775545788888888899963
No 33
>1ii7_A MRE11 nuclease; RAD50, DNA double-strand break repair, DAMP, manganese, replication; HET: DA; 2.20A {Pyrococcus furiosus} SCOP: d.159.1.4 PDB: 3dsc_A* 3dsd_A* 1s8e_A
Probab=33.06 E-value=23 Score=36.67 Aligned_cols=76 Identities=12% Similarity=0.022 Sum_probs=0.0
Q ss_pred eEEEEeCCCCCchhhc---------hhhHHHhHhhhccccCCCCCCCCCCCccccc-cceEEeHHHHHHHhhhccCCCCC
Q psy2623 430 MIVILSDVHLDNDKVR---------NNLCEFITSEFQGFVPNSTMATNPCRVQYCS-QEILVVREELLSKMCRNCIKFPE 499 (707)
Q Consensus 430 ~fVfvSD~~Lds~~~~---------~~L~~~l~~lf~~~~~~~p~aGNF~s~~y~s-qeiv~~rd~f~~km~RN~i~fp~ 499 (707)
+|+.+||.|++..... ..+...+...-....+.+.++|+.......+ .....+.+.+.
T Consensus 2 kilh~sD~Hlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vl~~GDl~d~~~~~~~~~~~~~~~l~------------ 69 (333)
T 1ii7_A 2 KFAHLADIHLGYEQFHKPQREEEFAEAFKNALEIAVQENVDFILIAGDLFHSSRPSPGTLKKAIALLQ------------ 69 (333)
T ss_dssp EEEEECCCCBTCCGGGCHHHHHHHHHHHHHHHHHHHHTTCSEEEEESCSBSSSSCCHHHHHHHHHHHH------------
T ss_pred EEEEEcccCCCCcccCCchhhHHHHHHHHHHHHHHHhcCCCEEEECCCcCCCCCCCHHHHHHHHHHHH------------
Q ss_pred cCCccccccccCCcceeEEEEecCCCCC
Q psy2623 500 EGDISKHVSKNNGEKDIIFLIVPKIYVE 527 (707)
Q Consensus 500 LadL~~~p~l~~~~s~~~fVfVPG~~Dp 527 (707)
.+...... ++.||||||.
T Consensus 70 --------~l~~~~~~--v~~v~GNHD~ 87 (333)
T 1ii7_A 70 --------IPKEHSIP--VFAIEGNHDR 87 (333)
T ss_dssp --------HHHTTTCC--EEEECCTTTC
T ss_pred --------HHHHCCCc--EEEeCCcCCC
No 34
>3rqz_A Metallophosphoesterase; PSI-biology, midwest center for structural genomics, MCSG, Zn binding, hydrolase; 1.95A {Sphaerobacter thermophilus} SCOP: d.159.1.0
Probab=30.63 E-value=62 Score=31.75 Aligned_cols=39 Identities=15% Similarity=0.116 Sum_probs=30.1
Q ss_pred CcEEEecCCCCCceee---------------------eCCeEEEcCCCCcccc-----cCeeEEEEE
Q psy2623 632 PDLVILGDQLNAYTIQ---------------------NTDCIFINPVFHNTVR-----NAFEVEKEH 672 (707)
Q Consensus 632 Pd~liL~D~~~~f~~~---------------------y~gc~vvNPG~~sF~~-----~~~~f~~y~ 672 (707)
+|+++.|+.+.++... -.|..++||| |-.. ..-+|..|+
T Consensus 143 ~~l~i~GHtH~p~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~ivNpG--SVG~Prdg~p~A~Y~i~d 207 (246)
T 3rqz_A 143 TPLCFVGHTHVPLYIREDEALSNVAPHHPNDGEVLDVSSGRYIINPG--AVGQPRDGDPRASYAIFE 207 (246)
T ss_dssp SSEEECCSSSSEEEEEHHHHHTTCCCBCCCTTCEEECSSSCEEEEEC--CSSCCCSSCCSEEEEEEE
T ss_pred CCEEEECCcCcccEEEecccccccccccccccceeecCCCeEEEECC--ccCCCCCcCCcceEEEEE
Confidence 5899999999988655 2379999999 8632 134788888
No 35
>2nxf_A Putative dimetal phosphatase; dinuclear metal center phosphatase, metalloprotein, metallophosphoesterase, protein structure initiative; 1.70A {Danio rerio} SCOP: d.159.1.12
Probab=29.78 E-value=15 Score=36.76 Aligned_cols=78 Identities=12% Similarity=-0.058 Sum_probs=0.0
Q ss_pred hcCCcceEEEEeCCCCCchhhc---------------hhhHHHhHhhhccccCCCCCCCCCCCccc-----cccceEEeH
Q psy2623 424 KNNENAMIVILSDVHLDNDKVR---------------NNLCEFITSEFQGFVPNSTMATNPCRVQY-----CSQEILVVR 483 (707)
Q Consensus 424 ~~~~~~~fVfvSD~~Lds~~~~---------------~~L~~~l~~lf~~~~~~~p~aGNF~s~~y-----~sqeiv~~r 483 (707)
+.....+|+++||+|++..... +.|...+..+-....+.+.++|+.+...- ...+...+.
T Consensus 1 ~~~~~~~i~~isD~H~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GD~~~~~~~~~~~~~~~~~~~~ 80 (322)
T 2nxf_A 1 SEDPVFTFGLIADVQYADIEDGENYLRTRRRYYRGSADLLRDAVLQWRRERVQCVVQLGDIIDGHNRRRDASDRALDTVM 80 (322)
T ss_dssp --CCSEEEEEECCCCBCSSCCEECTTSSSEECTTHHHHHHHHHHHHHHHTTCSEEEECSCCBCTHHHHTTCHHHHHHHHH
T ss_pred CCCCceEEEEEeeccccccCcccccccchHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCccCCCCCcchHHHHHHHHHH
Q ss_pred HHHHHHhhhccCCCCCcCCccccccccCCcceeEEEEecCCCC
Q psy2623 484 EELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYV 526 (707)
Q Consensus 484 d~f~~km~RN~i~fp~LadL~~~p~l~~~~s~~~fVfVPG~~D 526 (707)
+.+. . .... +++|||+||
T Consensus 81 ~~l~-----------~------------~~~p--~~~v~GNHD 98 (322)
T 2nxf_A 81 AELD-----------A------------CSVD--VHHVWGNHE 98 (322)
T ss_dssp HHHH-----------T------------TCSE--EEECCCHHH
T ss_pred HHHH-----------h------------cCCc--EEEecCCCC
No 36
>3rl5_A Metallophosphoesterase mpped2; alpha-beta fold, metallophosphodiesterase, active site mutan nucleotide polymorphism, hydrolase; 1.26A {Rattus norvegicus} PDB: 3rl3_A* 3rl4_A*
Probab=29.68 E-value=26 Score=36.54 Aligned_cols=32 Identities=19% Similarity=0.304 Sum_probs=26.9
Q ss_pred CCCcEEEecCCCCCcee-eeCCeEEEcCCCCcccc
Q psy2623 630 PLPDLVILGDQLNAYTI-QNTDCIFINPVFHNTVR 663 (707)
Q Consensus 630 PlPd~liL~D~~~~f~~-~y~gc~vvNPG~~sF~~ 663 (707)
--|++++-|+.+.++.. ...+++++||| |...
T Consensus 245 ~~p~l~v~GH~H~~~~~~~~g~t~vvNpG--s~~~ 277 (296)
T 3rl5_A 245 VRPKLHVFGGIHEGYGTMTDGYTTYINAS--TCTV 277 (296)
T ss_dssp TCCSEEEECSCGGGCEEEECSSCEEEECB--CSCT
T ss_pred cCCCEEEECCccCCCceEEECCEEEEECC--cCCc
Confidence 56899999999988764 56889999999 8863
No 37
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=27.81 E-value=1.4e+02 Score=30.21 Aligned_cols=53 Identities=17% Similarity=0.300 Sum_probs=39.9
Q ss_pred ceEEEEEEeeeccCC----cEEeecCCc-eEEEEeeccc----cCCCccCcCeEEEEEeEec
Q psy2623 323 HKTVVLGMISQLKEN----RYFLEDPTG-IVQLDLSQTS----YHPGLYTENCIVLVEGHYK 375 (707)
Q Consensus 323 ~~~vvLG~Lsq~~~G----~~~LED~tg-~i~Ldls~a~----~~~g~f~p~~iVLveG~f~ 375 (707)
..+.++|++...+++ .|-|+|-+| .|...+=... .....+.++.+|-+.|...
T Consensus 72 ~~V~ivG~V~~i~~~~~~~~~~L~D~TG~~I~~k~W~~~~~~~~~~~~~~~G~yVrV~G~v~ 133 (270)
T 2pi2_A 72 SQVTIVGIIRHAEKAPTNIVYKIDDMTAAPMDVRQWVDTDDTSSENTVVPPETYVKVAGHLR 133 (270)
T ss_dssp SEEEEEEEEEEEEECSSEEEEEEECSSSSCEEEEEECC-------CCCCCTTCEEEEEEEEE
T ss_pred EEEEEEEEEEEEEeccceEEEEEECCCCCEEEEEEEcCcCcccchhhcCCCCCEEEEEEEEE
Confidence 478999999888765 378999999 7777665432 1234579999999999885
No 38
>2xmo_A LMO2642 protein; phosphodiesterase, hydrolase; 1.70A {Listeria monocytogenes}
Probab=24.15 E-value=29 Score=37.26 Aligned_cols=79 Identities=11% Similarity=0.051 Sum_probs=0.0
Q ss_pred hcCCcceEEEEeCCCCCchh----------------------hchhhHHHhHhhhccccCCCCCCCCCCCccccccceEE
Q psy2623 424 KNNENAMIVILSDVHLDNDK----------------------VRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILV 481 (707)
Q Consensus 424 ~~~~~~~fVfvSD~~Lds~~----------------------~~~~L~~~l~~lf~~~~~~~p~aGNF~s~~y~sqeiv~ 481 (707)
......+|+++||+|++... ..+.|...+..+-....+...++|+.+...-.. +...
T Consensus 35 ~~~~~~~i~~iSD~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~d~vi~~GDl~~~~~~~-~~~~ 113 (443)
T 2xmo_A 35 EKDRNLSMVVTTDVHYFAPSLTDNGKAFEKYVAAGDGKQLAYSDEITDAFLADVESKKTDVLIISGDLTNNGEKT-SHEE 113 (443)
T ss_dssp CSCCCEEEEEECCCCBCCGGGBCCCHHHHHHHHTSTTCCGGGHHHHHHHHHHHHHHHTCSEEEEESCCBSSCCHH-HHHH
T ss_pred cCCCCeEEEEEeCCCCCCccccccchhhhcccccccccccccHHHHHHHHHHHHHHcCCCEEEECCCCCCCCCHH-HHHH
Q ss_pred eHHHHHHHhhhccCCCCCcCCccccccccCC-cceeEEEEecCCCC
Q psy2623 482 VREELLSKMCRNCIKFPEEGDISKHVSKNNG-EKDIIFLIVPKIYV 526 (707)
Q Consensus 482 ~rd~f~~km~RN~i~fp~LadL~~~p~l~~~-~s~~~fVfVPG~~D 526 (707)
+.+.+. .+. + ... ++.|||+||
T Consensus 114 ~~~~l~--------------------~l~-~~~~~--~~~v~GNHD 136 (443)
T 2xmo_A 114 LAKKLT--------------------QVE-KNGTQ--VFVVPGNHD 136 (443)
T ss_dssp HHHHHH--------------------HHH-HTTCE--EEEECCTTT
T ss_pred HHHHHH--------------------HHH-hCCCe--EEEECCcCC
Done!