Your job contains 1 sequence.
>psy2623
MHLHRDNPSCTYDLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKK
RKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTV
VLGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTLIFIFIILIISLCSFSFNSS
QVPTDVQGPVTAFETYHNLVPLILHPVIPVSNREQNNIMNWLKLSSECCRTEINSEEQIF
SVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNI
NPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPG
LYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMT
KMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEIL
VVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALP
KFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVR
TLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNTDCIFINPVFHN
TVRNAFEVEKEHHAVSSGVWLIQSSFKPEVIYVGELITWLLGHHYVT
The BLAST search returned 1 gene product which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy2623
(707 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|Q5ZKQ6 - symbol:POLE2 "DNA polymerase epsilon s... 822 5.8e-82 1
UNIPROTKB|F1MKI8 - symbol:POLE2 "DNA polymerase epsilon s... 814 4.1e-81 1
UNIPROTKB|E1C2T8 - symbol:POLE2 "DNA polymerase epsilon s... 812 6.6e-81 1
UNIPROTKB|A7YWS7 - symbol:POLE2 "DNA polymerase epsilon s... 811 8.5e-81 1
UNIPROTKB|F1SHZ5 - symbol:POLE2 "Uncharacterized protein"... 810 1.1e-80 1
MGI|MGI:1197514 - symbol:Pole2 "polymerase (DNA directed)... 809 1.4e-80 1
RGD|1311962 - symbol:Pole2 "polymerase (DNA directed), ep... 806 2.9e-80 1
UNIPROTKB|P56282 - symbol:POLE2 "DNA polymerase epsilon s... 804 4.7e-80 1
UNIPROTKB|E2RCT9 - symbol:DNAAF2 "Uncharacterized protein... 801 9.7e-80 1
UNIPROTKB|J9PBE8 - symbol:DNAAF2 "Uncharacterized protein... 801 9.7e-80 1
ZFIN|ZDB-GENE-020419-16 - symbol:pole2 "polymerase (DNA d... 786 3.8e-78 1
FB|FBgn0035644 - symbol:Pole2 "Pole2" species:7227 "Droso... 496 2.0e-47 1
TAIR|locus:504956460 - symbol:DPB2 "DNA polymerase epsilo... 468 1.9e-44 1
DICTYBASE|DDB_G0278367 - symbol:DDB_G0278367 "putative DN... 471 1.1e-43 1
WB|WBGene00017237 - symbol:pole-2 species:6239 "Caenorhab... 370 1.6e-38 2
POMBASE|SPBP8B7.14c - symbol:dpb2 "DNA polymerase epsilon... 276 7.5e-21 1
SGD|S000006379 - symbol:DPB2 "Second largest subunit of D... 174 1.1e-14 3
ASPGD|ASPL0000068420 - symbol:AN7439 species:162425 "Emer... 124 1.8e-10 4
CGD|CAL0000130 - symbol:DPB2 species:5476 "Candida albica... 110 3.8e-10 3
UNIPROTKB|Q5ACS8 - symbol:DPB2 "Potential DNA polymerase ... 110 3.8e-10 3
>UNIPROTKB|Q5ZKQ6 [details] [associations]
symbol:POLE2 "DNA polymerase epsilon subunit 2"
species:9031 "Gallus gallus" [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0008622 "epsilon DNA polymerase complex" evidence=IEA]
[GO:0006281 "DNA repair" evidence=TAS] InterPro:IPR007185
InterPro:IPR016266 Pfam:PF04042 PIRSF:PIRSF000799 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 GO:GO:0006261 Reactome:REACT_115612
GO:GO:0003887 eggNOG:NOG311342 KO:K02325
GeneTree:ENSGT00390000012435 CTD:5427 HOGENOM:HOG000265254
HOVERGEN:HBG061290 OrthoDB:EOG4Z8XW9 InterPro:IPR024639
Pfam:PF12213 OMA:PNHFVKT EMBL:AJ720028 IPI:IPI00582824
RefSeq:NP_001006493.1 UniGene:Gga.1227 ProteinModelPortal:Q5ZKQ6
SMR:Q5ZKQ6 STRING:Q5ZKQ6 Ensembl:ENSGALT00000019982 GeneID:423567
KEGG:gga:423567 InParanoid:Q5ZKQ6 NextBio:20826022
ArrayExpress:Q5ZKQ6 Uniprot:Q5ZKQ6
Length = 527
Score = 822 (294.4 bits), Expect = 5.8e-82, P = 5.8e-82
Identities = 181/442 (40%), Positives = 262/442 (59%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAKSKLFRE 282
EC + + + +F++I AFDIP++ Y + + K++LFRE
Sbjct: 73 ECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY+I++QRT RH LF I+P N +L VE L+ T + +VLGMI+QLKE
Sbjct: 133 RYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+YFLEDPTG+VQLDLS+ +H GLYTE+C VL EG Y+D++ HV+A GFPP E S +R
Sbjct: 193 GKYFLEDPTGVVQLDLSKAQFHSGLYTESCFVLAEGWYEDEVFHVNAFGFPPTEPSATTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
++GN N +GGPS S+K+ ++ ++E NE+AM V LSDV LD +V L + S +
Sbjct: 253 AFYGNINFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDVWLDQAEVLEKL-HTMFSGY 311
Query: 457 QGFVPNSTM-ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P N Y +I ++ L + C ++P S H S
Sbjct: 312 SSAPPTCFFFCGNFSSAPYGKNQIQSLKGSLKALADIIC-EYP-----SIHKSSR----- 360
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ G+V + P L + IT EF+ VP S TNPCRVQYC+QEI++ RE
Sbjct: 361 FVFVPGPEDPGPGSVLPR---PPLAENITQEFRQLVPFSVFTTNPCRVQYCTQEIIIFRE 417
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ AL +YP+PD+
Sbjct: 418 DLVNKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPVPDM 477
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
+++ D+ + +T+ NTDC+ INP
Sbjct: 478 LVIADKYDPFTVTNTDCLCINP 499
Score = 156 (60.0 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 43/126 (34%), Positives = 65/126 (51%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAK 70
+E EC + + + +F++I AFDIP++ Y + + K
Sbjct: 67 VEAAVQECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDK 126
Query: 71 SKLFRERYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY+I++QRT RH LF I+P N +L VE L+ T + +VLGM
Sbjct: 127 AELFRERYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGM 186
Query: 125 ISQLKE 130
I+QLKE
Sbjct: 187 ITQLKE 192
>UNIPROTKB|F1MKI8 [details] [associations]
symbol:POLE2 "DNA polymerase epsilon subunit 2"
species:9913 "Bos taurus" [GO:0008622 "epsilon DNA polymerase
complex" evidence=IEA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007185 InterPro:IPR016266 Pfam:PF04042
PIRSF:PIRSF000799 GO:GO:0005634 GO:GO:0003677 GO:GO:0006261
GO:GO:0003887 GeneTree:ENSGT00390000012435 IPI:IPI00868537
UniGene:Bt.28135 InterPro:IPR024639 Pfam:PF12213 OMA:PNHFVKT
EMBL:DAAA02028679 Ensembl:ENSBTAT00000006488 Uniprot:F1MKI8
Length = 527
Score = 814 (291.6 bits), Expect = 4.1e-81, P = 4.1e-81
Identities = 175/442 (39%), Positives = 262/442 (59%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAKSKLFRE 282
EC ++ + + IF++I AFDIP+F Y + + K++LFRE
Sbjct: 73 ECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +P+ K L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG +QLDLS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V L + S +
Sbjct: 253 AYYGNTNFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEVLEKL-HIMFSGY 311
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P + N Y ++ +++ L + C ++P + H S
Sbjct: 312 SPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYP-----NIHQSSR----- 360
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ G++ + P + IT+EF+ VP S TNPCR+QYC+QEI+V RE
Sbjct: 361 FVFVPGPEDPGFGSILPR---PPFAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIVFRE 417
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+PDL
Sbjct: 418 DLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDYALRVYPVPDL 477
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
+++ D+ + +T+ NT+C+ INP
Sbjct: 478 LVIADKYDPFTLTNTECLCINP 499
Score = 157 (60.3 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 43/127 (33%), Positives = 64/127 (50%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDA 69
++E EC ++ + + IF++I AFDIP+F Y + +
Sbjct: 66 VVEAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF +P+ K L +E L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>UNIPROTKB|E1C2T8 [details] [associations]
symbol:POLE2 "DNA polymerase epsilon subunit 2"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=IEA] InterPro:IPR007185
InterPro:IPR016266 Pfam:PF04042 PIRSF:PIRSF000799 GO:GO:0005634
GO:GO:0003677 GO:GO:0006261 GO:GO:0003887
GeneTree:ENSGT00390000012435 InterPro:IPR024639 Pfam:PF12213
EMBL:AADN02004024 IPI:IPI00603016 Ensembl:ENSGALT00000019983
ArrayExpress:E1C2T8 Uniprot:E1C2T8
Length = 527
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 180/442 (40%), Positives = 260/442 (58%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAKSKLFRE 282
EC + + + +F++I AFDIP++ Y + + K++LFRE
Sbjct: 73 ECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY+I++QRT RH LF I+P N +L VE L+ T + +VLGMI+QLKE
Sbjct: 133 RYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+YFLEDPTG+VQLDL +H GLYTE+C VL EG Y+D++ HV+A GFPP E S +R
Sbjct: 193 GKYFLEDPTGVVQLDLISLLFHSGLYTESCFVLAEGWYEDEVFHVNAFGFPPTEPSATTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
++GN N +GGPS S+K+ ++ ++E NE+AM V LSDV LD +V L + S +
Sbjct: 253 AFYGNINFFGGPSSASVKASAKLKQLEDENEDAMFVFLSDVWLDQAEVLEKL-HTMFSGY 311
Query: 457 QGFVPNSTM-ATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P N Y +I ++ L + C ++P S H S
Sbjct: 312 SSAPPTCFFFCGNFSSAPYGKNQIQSLKGSLKALADIIC-EYP-----SIHKSSR----- 360
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ G+V + P L + IT EF+ VP S TNPCRVQYC+QEI++ RE
Sbjct: 361 FVFVPGPEDPGPGSVLPR---PPLAENITQEFRQLVPFSVFTTNPCRVQYCTQEIIIFRE 417
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ AL +YP+PD+
Sbjct: 418 DLVNKMCRNCVRFPSSSMDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPVPDM 477
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
+++ D+ + +T+ NTDC+ INP
Sbjct: 478 LVIADKYDPFTVTNTDCLCINP 499
Score = 156 (60.0 bits), Expect = 9.0e-08, P = 9.0e-08
Identities = 43/126 (34%), Positives = 65/126 (51%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAK 70
+E EC + + + +F++I AFDIP++ Y + + K
Sbjct: 67 VEAAVQECSQALDETIKNVFNIIGAFDIPRYIYNPDRKRFVPLSMTNLPVPNLFGTARDK 126
Query: 71 SKLFRERYNIIRQRTLRHSLFNN----INP--NADSVKLDWVEYLMSLTNVNHKTVVLGM 124
++LFRERY+I++QRT RH LF I+P N +L VE L+ T + +VLGM
Sbjct: 127 AELFRERYSILQQRTHRHELFTPAAVVIHPDDNRSKFQLKTVETLLGNTAKVREVIVLGM 186
Query: 125 ISQLKE 130
I+QLKE
Sbjct: 187 ITQLKE 192
>UNIPROTKB|A7YWS7 [details] [associations]
symbol:POLE2 "DNA polymerase epsilon subunit 2"
species:9913 "Bos taurus" [GO:0008622 "epsilon DNA polymerase
complex" evidence=ISS] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
InterPro:IPR007185 InterPro:IPR016266 Pfam:PF04042
PIRSF:PIRSF000799 GO:GO:0003677 GO:GO:0006261 GO:GO:0008622
GO:GO:0003887 eggNOG:NOG311342 KO:K02325 EMBL:BC134762
IPI:IPI00868537 RefSeq:NP_001098853.1 UniGene:Bt.28135
ProteinModelPortal:A7YWS7 SMR:A7YWS7 STRING:A7YWS7 PRIDE:A7YWS7
GeneID:518653 KEGG:bta:518653 CTD:5427 HOGENOM:HOG000265254
HOVERGEN:HBG061290 InParanoid:A7YWS7 OrthoDB:EOG4Z8XW9
NextBio:20872700 InterPro:IPR024639 Pfam:PF12213 Uniprot:A7YWS7
Length = 527
Score = 811 (290.5 bits), Expect = 8.5e-81, P = 8.5e-81
Identities = 175/442 (39%), Positives = 261/442 (59%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAKSKLFRE 282
EC ++ + + IF++I AFDIP+F Y + + K++LFRE
Sbjct: 73 ECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +P+ K L +E L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG +QLDLS+ +H GLYTE+C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTIQLDLSKAQFHSGLYTESCFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V L + S +
Sbjct: 253 AYYGNTNFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEVLEKL-HIMFSGY 311
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P + N Y ++ +++ L + C +P + H S
Sbjct: 312 SPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-GYP-----NIHQSSR----- 360
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ G++ + P + IT+EF+ VP S TNPCR+QYC+QEI+V RE
Sbjct: 361 FVFVPGPEDPGFGSILPR---PPFAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIVFRE 417
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+PDL
Sbjct: 418 DLVNKMCRNCVRFPSSNLDIPNHFVKTVLSQGHLTPLPLYVCPVYWAYDYALRVYPVPDL 477
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
+++ D+ + +T+ NT+C+ INP
Sbjct: 478 LVIADKYDPFTLTNTECLCINP 499
Score = 157 (60.3 bits), Expect = 7.0e-08, P = 7.0e-08
Identities = 43/127 (33%), Positives = 64/127 (50%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDA 69
++E EC ++ + + IF++I AFDIP+F Y + +
Sbjct: 66 VVEAAVQECSQSVDETIDHIFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF +P+ K L +E L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>UNIPROTKB|F1SHZ5 [details] [associations]
symbol:POLE2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008622 "epsilon DNA polymerase complex" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR007185
InterPro:IPR016266 Pfam:PF04042 PIRSF:PIRSF000799 GO:GO:0005634
GO:GO:0003677 GO:GO:0006261 GO:GO:0003887 KO:K02325
GeneTree:ENSGT00390000012435 InterPro:IPR024639 Pfam:PF12213
OMA:PNHFVKT EMBL:CU633502 EMBL:CU633539 RefSeq:XP_003480516.1
Ensembl:ENSSSCT00000005524 GeneID:100521651 KEGG:ssc:100521651
Uniprot:F1SHZ5
Length = 527
Score = 810 (290.2 bits), Expect = 1.1e-80, P = 1.1e-80
Identities = 178/445 (40%), Positives = 263/445 (59%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAKSKLFRE 282
EC ++ + E IF++I AFDIP+F Y + + K++LFRE
Sbjct: 73 ECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTSHPAPNLFGTARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +P+ K L VE L+ T+ +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG V LDLS+ +H GLYTE+C VL EG ++DQI HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVPLDLSKAQFHSGLYTESCFVLAEGWFEDQIFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E N++AM V +SDV LD +V E + + F
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEDENKDAMFVFISDVWLDQVEV----LEKLHTMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P + N Y ++ +++ L + C ++P + H S
Sbjct: 309 SGYSPAPPTCFILCGNFSSTPYGKNQVQALKDSLKTLADIIC-EYP-----NIHQSSR-- 360
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+F+ P+ G++ + P + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 361 ---FVFVPGPEDPGFGSILPR---PPFAESITNEFRQRVPYSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL +CPVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPGSNLDIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ +NP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCLNP 499
Score = 162 (62.1 bits), Expect = 2.0e-08, P = 2.0e-08
Identities = 45/127 (35%), Positives = 64/127 (50%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDA 69
++E EC ++ + E IF++I AFDIP+F Y + +
Sbjct: 66 VVEAAVQECSQSVDETIEHIFNIIGAFDIPRFVYNSERKKFLPLLMTSHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I+ QRT RH LF +P+ K L VE L+ T+ +VLG
Sbjct: 126 KAELFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTVETLLGSTSKIGDVIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>MGI|MGI:1197514 [details] [associations]
symbol:Pole2 "polymerase (DNA directed), epsilon 2 (p59
subunit)" species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0006261 "DNA-dependent DNA
replication" evidence=IEA] [GO:0008622 "epsilon DNA polymerase
complex" evidence=ISO] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR007185 InterPro:IPR016266 Pfam:PF04042
PIRSF:PIRSF000799 MGI:MGI:1197514 GO:GO:0003677 GO:GO:0006261
GO:GO:0008622 GO:GO:0003887 eggNOG:NOG311342 KO:K02325
GeneTree:ENSGT00390000012435 CTD:5427 HOGENOM:HOG000265254
HOVERGEN:HBG061290 OrthoDB:EOG4Z8XW9 InterPro:IPR024639
Pfam:PF12213 OMA:PNHFVKT EMBL:AK077592 EMBL:BC063772 EMBL:AF036898
IPI:IPI00420320 RefSeq:NP_035263.1 UniGene:Mm.9199
ProteinModelPortal:O54956 SMR:O54956 STRING:O54956
PhosphoSite:O54956 PRIDE:O54956 Ensembl:ENSMUST00000021359
GeneID:18974 KEGG:mmu:18974 UCSC:uc007nrv.1 InParanoid:O54956
NextBio:295332 Bgee:O54956 Genevestigator:O54956
GermOnline:ENSMUSG00000020974 Uniprot:O54956
Length = 527
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 182/487 (37%), Positives = 275/487 (56%)
Query: 184 TDVQGPVTAFETYHNLVPLI-LHPVIPVS-NREQNNIMNWLKLSSECCRTEINSEEQIFS 241
T+ VT E NL +I P+S N + +++ EC ++ + E +F+
Sbjct: 30 TEALQSVTELELEENLGKIIDAVEKQPLSSNMIERSVVE--AAVQECSQSMDETIEHVFN 87
Query: 242 VISAFDIPQFDYXXXXXXXXXXXXXXXXC----ADSDAKSKLFRERYNIIRQRTLRHSLF 297
+I AFDIP+F Y + K++L+ ERY I+ QRT RH LF
Sbjct: 88 IIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARDKAELYLERYTILHQRTHRHELF 147
Query: 298 ------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
+++ + +L +E L+ T+ +VLGMI+QLKE ++FLEDPTG VQLD
Sbjct: 148 TPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKEGKFFLEDPTGTVQLD 207
Query: 352 LSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
LS+ +H GLYTE C VL EG ++DQ+ H +A GFPP E S +R Y+GN N +GGPS
Sbjct: 208 LSKAQFHSGLYTEACFVLAEGWFEDQVFHANAFGFPPTEPSSTTRAYYGNINFFGGPSNA 267
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNS-TMATNPC 470
S+K+ ++ ++E N++AM VI+SDV LD +V + S + P + N
Sbjct: 268 SVKTYTKLRQLEDENKDAMFVIVSDVWLDQVQVLEKF-HVMFSGYSPAPPTCFILCGNFS 326
Query: 471 RVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTV 530
Y ++ +++ L S C ++P S H S +F+ P+ G++
Sbjct: 327 SAPYGKNQVQALKDSLKSLADIIC-EYP-----SIHQSSR-----FVFVPGPEDPGFGSI 375
Query: 531 TSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE 590
+ P L + IT EF+ VP S TNPCR+QYC+QEI++ RE+L++KMCRNC++FP
Sbjct: 376 LPR---PPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIIIFREDLVNKMCRNCVRFPS 432
Query: 591 EG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNT 649
DI HFV+T++SQG L LPL +CPV+W+ L +YP+PDL+++ D+ + +T+ NT
Sbjct: 433 SSLDIPTHFVKTILSQGHLAPLPLYVCPVHWAYDYTLRVYPVPDLLVIADKYDPFTVTNT 492
Query: 650 DCIFINP 656
DC+ INP
Sbjct: 493 DCLCINP 499
Score = 153 (58.9 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 39/127 (30%), Positives = 63/127 (49%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXC----ADSDA 69
++E EC ++ + E +F++I AFDIP+F Y +
Sbjct: 66 VVEAAVQECSQSMDETIEHVFNIIGAFDIPRFIYNSERKKFLPLSMTNHAAPTLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLF------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLG 123
K++L+ ERY I+ QRT RH LF +++ + +L +E L+ T+ +VLG
Sbjct: 126 KAELYLERYTILHQRTHRHELFTPPVIGSHLEESGSKFQLKTIETLLGSTSKVGDVIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>RGD|1311962 [details] [associations]
symbol:Pole2 "polymerase (DNA directed), epsilon 2, accessory
subunit" species:10116 "Rattus norvegicus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0008622 "epsilon DNA polymerase complex" evidence=ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR007185 InterPro:IPR016266 Pfam:PF04042
PIRSF:PIRSF000799 RGD:1311962 GO:GO:0005634 GO:GO:0003677
GO:GO:0006261 GO:GO:0003887 GeneTree:ENSGT00390000012435
OrthoDB:EOG4Z8XW9 InterPro:IPR024639 Pfam:PF12213 IPI:IPI00365828
Ensembl:ENSRNOT00000005835 UCSC:RGD:1311962 Uniprot:D4ABZ5
Length = 527
Score = 806 (288.8 bits), Expect = 2.9e-80, P = 2.9e-80
Identities = 186/487 (38%), Positives = 275/487 (56%)
Query: 184 TDVQGPVTAFETYHNLVPLI-LHPVIPVS-NREQNNIMNWLKLSSECCRTEINSEEQIFS 241
T+ VT E NL +I P+S N + +++ EC ++ + E IF+
Sbjct: 30 TEALQSVTELELEENLEKIIDAVEKQPLSSNMIERSVVE--AAVQECSQSVDETIEHIFN 87
Query: 242 VISAFDIPQFDYXXXXXXXXXXXXXXXXC----ADSDAKSKLFRERYNIIRQRTLRHSLF 297
+I AFDIP F Y + K++L+RERY I+ QRT RH LF
Sbjct: 88 IIGAFDIPHFIYNSERKKFLPLSMTNHAAPTIFGTARDKAELYRERYTILHQRTHRHELF 147
Query: 298 N----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLD 351
+P+ K L +E L+ T+ +VLGMI+QLKE ++FLEDPTG VQLD
Sbjct: 148 TPPVIGSHPDESGSKFQLKTIETLLGSTSKVGDVIVLGMITQLKEGKFFLEDPTGTVQLD 207
Query: 352 LSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPV 411
LS+ +H GLYTE C VL EG ++DQ+ H +A GFPP E S +R Y+GN N +GGPS
Sbjct: 208 LSKDQFHSGLYTEACFVLAEGCFEDQVFHANAFGFPPTEPSSTTRAYYGNINFFGGPSNA 267
Query: 412 SLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNS-TMATNPC 470
S+K+ ++ ++E+ N++AM VI+SDV LD +V L + S + P + N
Sbjct: 268 SVKASAKLRQLEEENKDAMFVIVSDVWLDQVQVLEKL-HVMFSGYSPAPPTCFILCGNFS 326
Query: 471 RVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTV 530
Y ++ +++ L S C ++P S H S +F+ P+ G++
Sbjct: 327 SAPYGKNQVQALKDSLKSLADIIC-EYP-----SIHQSSR-----FVFVPGPEDPGFGSI 375
Query: 531 TSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE 590
+ P L + IT EF+ VP S TNPCR+QYC+QEI++ RE+L++KMCRNC++FP
Sbjct: 376 LPR---PPLAESITQEFRQRVPFSVFTTNPCRIQYCTQEIIIFREDLVNKMCRNCVRFPS 432
Query: 591 EG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNT 649
DI HFV+T++SQG L LPL + PVYW+ L +YP+PDL+++ D+ + +T+ NT
Sbjct: 433 SSLDIPTHFVKTVLSQGHLAPLPLYVSPVYWAYDYTLRVYPVPDLLVIADKYDPFTVTNT 492
Query: 650 DCIFINP 656
+C+ INP
Sbjct: 493 ECLCINP 499
Score = 158 (60.7 bits), Expect = 5.4e-08, P = 5.4e-08
Identities = 43/127 (33%), Positives = 62/127 (48%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXC----ADSDA 69
++E EC ++ + E IF++I AFDIP F Y +
Sbjct: 66 VVEAAVQECSQSVDETIEHIFNIIGAFDIPHFIYNSERKKFLPLSMTNHAAPTIFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
K++L+RERY I+ QRT RH LF +P+ K L +E L+ T+ +VLG
Sbjct: 126 KAELYRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTSKVGDVIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>UNIPROTKB|P56282 [details] [associations]
symbol:POLE2 "DNA polymerase epsilon subunit 2"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=IEA]
[GO:0008622 "epsilon DNA polymerase complex" evidence=IDA]
[GO:0006260 "DNA replication" evidence=TAS] [GO:0000082 "G1/S
transition of mitotic cell cycle" evidence=TAS] [GO:0000084 "S
phase of mitotic cell cycle" evidence=TAS] [GO:0000216 "M/G1
transition of mitotic cell cycle" evidence=TAS] [GO:0000278
"mitotic cell cycle" evidence=TAS] [GO:0000722 "telomere
maintenance via recombination" evidence=TAS] [GO:0000723 "telomere
maintenance" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0006270 "DNA replication initiation" evidence=TAS] [GO:0006281
"DNA repair" evidence=TAS] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=TAS] [GO:0006289
"nucleotide-excision repair" evidence=TAS] [GO:0006297
"nucleotide-excision repair, DNA gap filling" evidence=TAS]
[GO:0032201 "telomere maintenance via semi-conservative
replication" evidence=TAS] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] Reactome:REACT_216
InterPro:IPR007185 InterPro:IPR016266 Pfam:PF04042
PIRSF:PIRSF000799 Reactome:REACT_115566 GO:GO:0005654
Reactome:REACT_21300 GO:GO:0003677 GO:GO:0000082 GO:GO:0006270
GO:GO:0000216 GO:GO:0000084 GO:GO:0000722 Reactome:REACT_383
GO:GO:0006283 GO:GO:0008622 GO:GO:0003887 GO:GO:0032201
GO:GO:0006297 eggNOG:NOG311342 KO:K02325 CTD:5427
HOGENOM:HOG000265254 HOVERGEN:HBG061290 OrthoDB:EOG4Z8XW9
InterPro:IPR024639 Pfam:PF12213 OMA:PNHFVKT EMBL:AF025840
EMBL:AF036899 EMBL:AF387034 EMBL:AF387021 EMBL:AF387022
EMBL:AF387023 EMBL:AF387024 EMBL:AF387025 EMBL:AF387026
EMBL:AF387027 EMBL:AF387028 EMBL:AF387029 EMBL:AF387030
EMBL:AF387031 EMBL:AF387032 EMBL:AF387033 EMBL:EF506887
EMBL:AK293163 EMBL:AL139099 EMBL:AL591767 EMBL:BC112962
EMBL:BC126218 EMBL:BC126220 IPI:IPI00008829 IPI:IPI00980278
RefSeq:NP_001184259.1 RefSeq:NP_001184260.1 RefSeq:NP_002683.2
UniGene:Hs.162777 PDB:2V6Z PDBsum:2V6Z ProteinModelPortal:P56282
SMR:P56282 IntAct:P56282 MINT:MINT-1377461 STRING:P56282
PhosphoSite:P56282 DMDM:3915676 PaxDb:P56282 PRIDE:P56282
DNASU:5427 Ensembl:ENST00000216367 Ensembl:ENST00000539565
Ensembl:ENST00000554396 GeneID:5427 KEGG:hsa:5427 UCSC:uc001wwu.3
GeneCards:GC14M050110 HGNC:HGNC:9178 HPA:HPA027555 MIM:602670
neXtProt:NX_P56282 PharmGKB:PA278 InParanoid:P56282
EvolutionaryTrace:P56282 GenomeRNAi:5427 NextBio:20997
ArrayExpress:P56282 Bgee:P56282 CleanEx:HS_POLE2
Genevestigator:P56282 GermOnline:ENSG00000100479 Uniprot:P56282
Length = 527
Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
Identities = 177/442 (40%), Positives = 259/442 (58%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDA----KSKLFRE 282
EC ++ + E +F++I AFDIP+F Y + K+++FRE
Sbjct: 73 ECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRDKAEMFRE 132
Query: 283 RYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF +P+ K L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE C VL EG ++DQ+ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTEACFVLAEGWFEDQVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V LSDV LD +V L + + +
Sbjct: 253 AYYGNINFFGGPSNTSVKTSAKLKQLEEENKDAMFVFLSDVWLDQVEVLEKL-RIMFAGY 311
Query: 457 QGFVPNS-TMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKD 515
P + N Y ++ +++ L + C ++P DI H S
Sbjct: 312 SPAPPTCFILCGNFSSAPYGKNQVQALKDSLKTLADIIC-EYP---DI--HQSSR----- 360
Query: 516 IIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVRE 575
+F+ P+ G++ + P L + IT+EF+ VP S TNPCR+QYC+QEI V RE
Sbjct: 361 FVFVPGPEDPGFGSILPR---PPLAESITNEFRQRVPFSVFTTNPCRIQYCTQEITVFRE 417
Query: 576 ELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDL 634
+L++KMCRNC++FP I HFV+T++SQG L LPL +CPVYW+ AL +YP+PDL
Sbjct: 418 DLVNKMCRNCVRFPSSNLAIPNHFVKTILSQGHLTPLPLYVCPVYWAYDYALRVYPVPDL 477
Query: 635 VILGDQLNAYTIQNTDCIFINP 656
+++ D+ + +T NT+C+ INP
Sbjct: 478 LVIADKYDPFTTTNTECLCINP 499
Score = 154 (59.3 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 42/127 (33%), Positives = 62/127 (48%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDA---- 69
++E EC ++ + E +F++I AFDIP+F Y +
Sbjct: 66 VVEAAVQECSQSVDETIEHVFNIIGAFDIPRFVYNSERKKFLPLLMTNHPAPNLFGTPRD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFN----NINPNADSVK--LDWVEYLMSLTNVNHKTVVLG 123
K+++FRERY I+ QRT RH LF +P+ K L +E L+ T +VLG
Sbjct: 126 KAEMFRERYTILHQRTHRHELFTPPVIGSHPDESGSKFQLKTIETLLGSTTKIGDAIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>UNIPROTKB|E2RCT9 [details] [associations]
symbol:DNAAF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 InterPro:IPR016266
Pfam:PF04042 PIRSF:PIRSF000799 GO:GO:0005634 GO:GO:0003677
GO:GO:0006261 GO:GO:0003887 KO:K02325 CTD:5427 InterPro:IPR024639
Pfam:PF12213 GeneTree:ENSGT00510000048466 EMBL:AAEX03005718
EMBL:AAEX03005717 RefSeq:XP_851216.1 Ensembl:ENSCAFT00000022550
GeneID:608973 KEGG:cfa:608973 Uniprot:E2RCT9
Length = 527
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 177/445 (39%), Positives = 261/445 (58%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAKSKLFRE 282
EC + + E IF++I AFDIP+F Y + + K++LF E
Sbjct: 73 ECSQLVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARDKAELFLE 132
Query: 283 RYNIIRQRTLRHSLFNN--INPNADSV----KLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF I + D +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDETGSKFQLKTIETLLGSTAKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE+C VL EG ++D++ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTESCFVLAEGWFEDRVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD +V L + F
Sbjct: 253 AYYGNVNFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQGEVLRKL----HTMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P M N Y +I +++ L + C ++P + H S
Sbjct: 309 SGYSPAPPTCFIMCGNFSSAPYGKSQIQALKDSLKTLADIIC-EYP-----NIHQSSR-- 360
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+F+ P+ G++ + P + + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 361 ---FVFIPGPEDPGFGSILPR---PPIAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCINP 499
Score = 148 (57.2 bits), Expect = 6.7e-07, P = 6.7e-07
Identities = 43/127 (33%), Positives = 61/127 (48%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDA 69
++E EC + + E IF++I AFDIP+F Y + +
Sbjct: 66 VVEAAVQECSQLVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFNN--INPNADSV----KLDWVEYLMSLTNVNHKTVVLG 123
K++LF ERY I+ QRT RH LF I + D +L +E L+ T +VLG
Sbjct: 126 KAELFLERYTILHQRTHRHELFTPPVIGSHPDETGSKFQLKTIETLLGSTAKIGDVIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>UNIPROTKB|J9PBE8 [details] [associations]
symbol:DNAAF2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006261 "DNA-dependent DNA replication"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007185 InterPro:IPR016266
Pfam:PF04042 PIRSF:PIRSF000799 GO:GO:0005634 GO:GO:0003677
GO:GO:0006261 GO:GO:0003887 InterPro:IPR024639 Pfam:PF12213
OMA:PNHFVKT GeneTree:ENSGT00510000048466 EMBL:AAEX03005718
EMBL:AAEX03005717 Ensembl:ENSCAFT00000044832 Uniprot:J9PBE8
Length = 547
Score = 801 (287.0 bits), Expect = 9.7e-80, P = 9.7e-80
Identities = 177/445 (39%), Positives = 261/445 (58%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDAKSKLFRE 282
EC + + E IF++I AFDIP+F Y + + K++LF E
Sbjct: 73 ECSQLVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARDKAELFLE 132
Query: 283 RYNIIRQRTLRHSLFNN--INPNADSV----KLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I+ QRT RH LF I + D +L +E L+ T +VLGMI+QLKE
Sbjct: 133 RYTILHQRTHRHELFTPPVIGSHPDETGSKFQLKTIETLLGSTAKIGDVIVLGMITQLKE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
++FLEDPTG VQLDLS+ +H GLYTE+C VL EG ++D++ HV+A GFPP E S +R
Sbjct: 193 GKFFLEDPTGTVQLDLSKAQFHSGLYTESCFVLAEGWFEDRVFHVNAFGFPPTEPSSTTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
Y+GN N +GGPS S+K+ ++ ++E+ N++AM V +SDV LD +V L + F
Sbjct: 253 AYYGNVNFFGGPSNTSVKTSAKLKQLEEENKDAMFVFISDVWLDQGEVLRKL----HTMF 308
Query: 457 QGFVPNST----MATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNG 512
G+ P M N Y +I +++ L + C ++P + H S
Sbjct: 309 SGYSPAPPTCFIMCGNFSSAPYGKSQIQALKDSLKTLADIIC-EYP-----NIHQSSR-- 360
Query: 513 EKDIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILV 572
+F+ P+ G++ + P + + IT+EF+ VP S TNPCR+QYC+QEI+V
Sbjct: 361 ---FVFIPGPEDPGFGSILPR---PPIAESITNEFRQRVPFSVFTTNPCRIQYCTQEIIV 414
Query: 573 VREELLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPL 631
RE+L++KMCRNC++FP DI HFV+T++SQG L LPL + PVYW+ AL +YP+
Sbjct: 415 FREDLVNKMCRNCVRFPSSNLDIPNHFVKTILSQGHLTPLPLYVSPVYWAYDYALRVYPV 474
Query: 632 PDLVILGDQLNAYTIQNTDCIFINP 656
PDL+++ D+ + +T+ NT+C+ INP
Sbjct: 475 PDLLVIADKYDPFTLTNTECLCINP 499
Score = 148 (57.2 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 43/127 (33%), Positives = 61/127 (48%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCAD----SDA 69
++E EC + + E IF++I AFDIP+F Y + +
Sbjct: 66 VVEAAVQECSQLVDETIEHIFNIIGAFDIPRFVYSSERKKFLPLLMTNHPAPNLFGTARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFNN--INPNADSV----KLDWVEYLMSLTNVNHKTVVLG 123
K++LF ERY I+ QRT RH LF I + D +L +E L+ T +VLG
Sbjct: 126 KAELFLERYTILHQRTHRHELFTPPVIGSHPDETGSKFQLKTIETLLGSTAKIGDVIVLG 185
Query: 124 MISQLKE 130
MI+QLKE
Sbjct: 186 MITQLKE 192
>ZFIN|ZDB-GENE-020419-16 [details] [associations]
symbol:pole2 "polymerase (DNA directed), epsilon 2"
species:7955 "Danio rerio" [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IEA] [GO:0006260 "DNA replication" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] InterPro:IPR007185 InterPro:IPR016266 Pfam:PF04042
PIRSF:PIRSF000799 ZFIN:ZDB-GENE-020419-16 GO:GO:0005634
GO:GO:0003677 GO:GO:0006261 GO:GO:0003887 KO:K02325 CTD:5427
HOVERGEN:HBG061290 InterPro:IPR024639 Pfam:PF12213 EMBL:AF506228
IPI:IPI00862057 RefSeq:NP_775353.1 UniGene:Dr.77075 GeneID:192320
KEGG:dre:192320 NextBio:20797156 ArrayExpress:Q8JHG8 Uniprot:Q8JHG8
Length = 527
Score = 786 (281.7 bits), Expect = 3.8e-78, P = 3.8e-78
Identities = 170/441 (38%), Positives = 253/441 (57%)
Query: 227 ECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXX----XCADSDAKSKLFRE 282
+C ++ + + +F++I AFD+P+F + C + K++LFRE
Sbjct: 73 DCSQSCDETIDHVFNIIGAFDVPRFIFSTERKKFVPISMTNHPLPKLCGQARDKAELFRE 132
Query: 283 RYNIIRQRTLRHSLFNN--INPNADS----VKLDWVEYLMSLTNVNHKTVVLGMISQLKE 336
RY I++QRT RH LF I D +L VE L+ + + +VLGMI+QL+E
Sbjct: 133 RYTILQQRTHRHELFTPPVIGSAQDEGRNKFQLKTVEALLCSSARLGEVIVLGMITQLRE 192
Query: 337 NRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSR 396
+++LEDP+G VQLD+S+ +H GLYTE+C VL EG Y+D + HV A GFPP E S +R
Sbjct: 193 GKFYLEDPSGTVQLDISKAQFHSGLYTESCFVLAEGWYEDSVFHVSAFGFPPTEPSSFTR 252
Query: 397 LYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEF 456
YFGN N +GGPS ++K+ ++ ++E+ NE+AM V++SDV LD+ +V E I + F
Sbjct: 253 AYFGNVNFFGGPSSTAVKASAKLKQLEEENEDAMFVLVSDVWLDSVEV----LEKIHTMF 308
Query: 457 QGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDI 516
G+ A P +C + R+ F D+ +
Sbjct: 309 SGY-----SALPPTCFIFCGSFSSAPYGRTQLRSLRD--SFKALADLICEFPSIHSSSRF 361
Query: 517 IFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 576
+F+ P+ G V + P L + IT EFQ VP S TNPCR+QYCSQE++++RE+
Sbjct: 362 VFVPGPEDPGPGAVLPR---PPLAEHITEEFQQRVPLSVFTTNPCRIQYCSQELVIIRED 418
Query: 577 LLSKMCRNCIKFPEEG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLV 635
L++KMCRNC + P DI HFV+T++SQG L LPL +CPV+W+ L LYP+PD++
Sbjct: 419 LVNKMCRNCERLPSSSLDIPTHFVKTVLSQGHLTPLPLYVCPVFWAYDHTLRLYPVPDVI 478
Query: 636 ILGDQLNAYTIQNTDCIFINP 656
+ D+ + + I NTDC+ INP
Sbjct: 479 VFADKYDPFNICNTDCLCINP 499
Score = 144 (55.7 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 39/127 (30%), Positives = 64/127 (50%)
Query: 14 LIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXX----XCADSDA 69
++E +C ++ + + +F++I AFD+P+F + C +
Sbjct: 66 VLEAAVQDCSQSCDETIDHVFNIIGAFDVPRFIFSTERKKFVPISMTNHPLPKLCGQARD 125
Query: 70 KSKLFRERYNIIRQRTLRHSLFNN--INPNADS----VKLDWVEYLMSLTNVNHKTVVLG 123
K++LFRERY I++QRT RH LF I D +L VE L+ + + +VLG
Sbjct: 126 KAELFRERYTILQQRTHRHELFTPPVIGSAQDEGRNKFQLKTVEALLCSSARLGEVIVLG 185
Query: 124 MISQLKE 130
MI+QL+E
Sbjct: 186 MITQLRE 192
>FB|FBgn0035644 [details] [associations]
symbol:Pole2 "Pole2" species:7227 "Drosophila melanogaster"
[GO:0008622 "epsilon DNA polymerase complex" evidence=ISS;NAS]
[GO:0003887 "DNA-directed DNA polymerase activity" evidence=ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006261 "DNA-dependent
DNA replication" evidence=IEA;NAS] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] InterPro:IPR007185
InterPro:IPR016266 Pfam:PF04042 PIRSF:PIRSF000799 GO:GO:0005634
EMBL:AE014296 GO:GO:0003677 GO:GO:0006974 GO:GO:0006261
GO:GO:0003887 KO:K02325 GeneTree:ENSGT00390000012435 CTD:5427
InterPro:IPR024639 Pfam:PF12213 OMA:PNHFVKT FlyBase:FBgn0035644
RefSeq:NP_647995.1 UniGene:Dm.858 ProteinModelPortal:Q9VRQ7
SMR:Q9VRQ7 IntAct:Q9VRQ7 MINT:MINT-981579 STRING:Q9VRQ7
PRIDE:Q9VRQ7 EnsemblMetazoa:FBtr0077081 GeneID:38661
KEGG:dme:Dmel_CG10489 UCSC:CG10489-RA InParanoid:Q9VRQ7
PhylomeDB:Q9VRQ7 GenomeRNAi:38661 NextBio:809771
ArrayExpress:Q9VRQ7 Bgee:Q9VRQ7 Uniprot:Q9VRQ7
Length = 525
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 134/455 (29%), Positives = 216/455 (47%)
Query: 223 KLSSECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDAKSKLFRE 282
K +E R ++ E +F++I AF +P+F Y KS ++
Sbjct: 71 KAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTAPRMKSDYMQQ 130
Query: 283 RYNIIRQRTLRHSLF------NNINPNADS--VKLDWVEYLMSLTNVNHKTVVLGMISQL 334
RY ++ Q+TLRH LF + + A + KL + E L++ T+ + VVLG+++QL
Sbjct: 131 RYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVVLGLLTQL 189
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKN 394
KE ++++EDPTG VQLDL+ +H G + E C VL EG+Y + +L VD LGFPP E + +
Sbjct: 190 KEGKFYVEDPTGCVQLDLTGARFHAGFFCEGCFVLAEGNYNNGVLKVDGLGFPPAEPANS 249
Query: 395 SRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITS 454
SR +FG N WGG S LK + ++E+ N IV LSDV LD V L +
Sbjct: 250 SRAFFGTANTWGGESAKLLKYSAGLQELERTNTETTIVFLSDVRLDLPVVMEKLRQLFVG 309
Query: 455 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEK 514
+ P + + P + L + L + C + ++ D+ + + E
Sbjct: 310 -YDSCPPQAIVLMGPFTASTRNHHELRHHLDALGGLAAGCEQLKKQTDL---ILVPSSED 365
Query: 515 DIIFLIVPKIYVEGTVTSKVLSPALPKFITSEFQGFVPNSTMATNPCRVQYCSQEILVVR 574
I+P+ + + + +L A P+ + + T CR+ ++ R
Sbjct: 366 PTAPNILPRAPIPECLAAGLLK-AWPRTQLATNPCRLQYCTQQIVVCRLDLMAK---FCR 421
Query: 575 EELLSKMCRNCIKFPEEGDISKHFVRTLVSQGTLVSL-PLNLCPVYWSQYGALSLYPLPD 633
L + I +HF RT+V QG LV + P+ + PV+W AL LYPLPD
Sbjct: 422 NTLHFP--------EDTSQIEQHFARTIVCQGHLVPIHPIAM-PVHWDYDPALWLYPLPD 472
Query: 634 LVILGDQLNAYTIQNTDCIFINPVFHNTVRNAFEV 668
L+++GD +++ C +N + AF+V
Sbjct: 473 LIVMGDSCQSFSSSQHGCTVLNTGSFVKSKFAFKV 507
Score = 135 (52.6 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 37/124 (29%), Positives = 61/124 (49%)
Query: 15 IEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDAKSKLF 74
+E NE R ++ E +F++I AF +P+F Y KS
Sbjct: 69 LEKAINELNRVGLDEGETVFALIDAFTVPRFRYNQRIKKFELDTQPRQLLTAPRMKSDYM 128
Query: 75 RERYNIIRQRTLRHSLF------NNINPNADS--VKLDWVEYLMSLTNVNHKTVVLGMIS 126
++RY ++ Q+TLRH LF + + A + KL + E L++ T+ + VVLG+++
Sbjct: 129 QQRYAMLLQKTLRHDLFAPAVIQDGVGAEAQAKKFKLQFAENLLA-TSAMKEAVVLGLLT 187
Query: 127 QLKE 130
QLKE
Sbjct: 188 QLKE 191
>TAIR|locus:504956460 [details] [associations]
symbol:DPB2 "DNA polymerase epsilon subunit B2"
species:3702 "Arabidopsis thaliana" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003887 "DNA-directed DNA polymerase activity"
evidence=IEA;ISS] [GO:0005634 "nucleus" evidence=ISM;IEA;ISS]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0006261
"DNA-dependent DNA replication" evidence=IEA] [GO:0008622 "epsilon
DNA polymerase complex" evidence=IPI] InterPro:IPR007185
InterPro:IPR016266 Pfam:PF04042 PIRSF:PIRSF000799 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003677 GO:GO:0006261 GO:GO:0008622
GO:GO:0003887 eggNOG:NOG311342 KO:K02325 HOGENOM:HOG000265254
OMA:PNHFVKT UniGene:At.44338 UniGene:At.45633 EMBL:BT022108
IPI:IPI00516525 RefSeq:NP_680197.2 ProteinModelPortal:Q500V9
STRING:Q500V9 PaxDb:Q500V9 PRIDE:Q500V9 EnsemblPlants:AT5G22110.1
GeneID:832272 KEGG:ath:AT5G22110 TAIR:At5g22110 InParanoid:Q500V9
PhylomeDB:Q500V9 ProtClustDB:CLSN2695393 Genevestigator:Q500V9
Uniprot:Q500V9
Length = 526
Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
Identities = 133/450 (29%), Positives = 219/450 (48%)
Query: 205 HPVIPVSNREQNNIMNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXX 264
H V ++N L L + E + ++I AF +P+F Y
Sbjct: 57 HKSSTVDAESVRGLINRL-LGAHNAPEEPTTSASSLAIIDAFLVPKFGYDSVKKKFNEHT 115
Query: 265 XXXXXCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLD--WVEYLMSLTNVN 322
++ AK+ L+RER+ ++ QR R F+ +A+ + + + + SL +
Sbjct: 116 SSLPIHGEASAKTALYRERFMLLSQRVSRAEHFSRPAFDAEMSQFENNEISSIQSLISQR 175
Query: 323 HKTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYK-DQILHV 381
+ V+G+ISQL++ ++LED + V++DLS+ G +TEN I+L EG + + I V
Sbjct: 176 GRKWVMGVISQLEDGHFYLEDLSASVEIDLSKAKITTGFFTENTIILAEGEMQVNGIFQV 235
Query: 382 DALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDN 441
GFPP E + + +GG + ++ + + ++ +E+ N VILSD+ LD+
Sbjct: 236 ITCGFPPLEDRDKTLKAHSEYDFFGGGT-LTKEEMIKLADLERQAVNDTFVILSDIWLDD 294
Query: 442 DKVRNNLCEFITSEFQGF--VPN-----STMATNPCRVQYCSQEILVVREELLSKMCRNC 494
++V L E + F+ VP+ + PC + + S L RE+ K+ R
Sbjct: 295 EEVMRKL-ETVLDGFESVETVPSLFVFMGNFCSRPCNLSFGSYSSL--REQF-GKLGRMI 350
Query: 495 IKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSP-ALPKFITSEFQGFVPN 553
P K N FL +P E S VL ALPK++T E + +PN
Sbjct: 351 GNHPR--------LKENSR----FLFIPG--PEDAGPSTVLPRCALPKYLTEELRNIIPN 396
Query: 554 STMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP---EEGDISKHFVRTLVSQGTLVS 610
+ ++NPCRV++ +QEI+ R++LL +M R+C+ P E D KH V T+ Q L
Sbjct: 397 AIFSSNPCRVKFYNQEIVFFRQDLLYRMRRSCLVTPSSEETNDPFKHLVYTITHQSHLCP 456
Query: 611 LPLNLCPVYWSQYGALSLYPLPDLVILGDQ 640
LPL + P+ W+ AL LYP P ++LGD+
Sbjct: 457 LPLMVQPIIWNYDHALRLYPTPHTIVLGDK 486
>DICTYBASE|DDB_G0278367 [details] [associations]
symbol:DDB_G0278367 "putative DNA polymerase epsilon
subunit B" species:44689 "Dictyostelium discoideum" [GO:0006260
"DNA replication" evidence=IEA] [GO:0003887 "DNA-directed DNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] [GO:0016740 "transferase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] InterPro:IPR007185 Pfam:PF04042
dictyBase:DDB_G0278367 GO:GO:0005634 GenomeReviews:CM000152_GR
GO:GO:0003677 GO:GO:0006260 EMBL:AAFI02000023 GO:GO:0003887
eggNOG:NOG311342 KO:K02325 RefSeq:XP_642317.1 STRING:Q54Y85
EnsemblProtists:DDB0216321 GeneID:8621523 KEGG:ddi:DDB_G0278367
OMA:EHPLING ProtClustDB:CLSZ2430775 Uniprot:Q54Y85
Length = 676
Score = 471 (170.9 bits), Expect = 1.1e-43, P = 1.1e-43
Identities = 124/433 (28%), Positives = 218/433 (50%)
Query: 236 EEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXC-ADSDAKSKLFRERYNIIRQRTLRH 294
E++ VI AF+ P F++ S++KS L+R+RY + QRT R+
Sbjct: 76 EKEALKVIDAFNTPLFNFDSNSKQFIKSENFDRSLHGSSNSKSDLYRKRYLKVLQRTERN 135
Query: 295 SLFNNINPNADSVKLDW--VEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDL 352
F+ +D +K ++ + L SL + VLG ISQ++E+++++ED V++D+
Sbjct: 136 DYFSTPVLASDKLKNEYQTITPLSSLLGNTGRKHVLGTISQIEEDQFYIEDLNTNVKIDI 195
Query: 353 SQTSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVS 412
S+ + G+ T N I+ G + D + D + PP E + + N +++G P
Sbjct: 196 SKAKFEFGIVTINSIIQASGEFIDGVFIADKIQLPPTEERCETLKFLQNIDMFG-ERPQK 254
Query: 413 LKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRV 472
K++ ++ K EK E+ I+ LSDV LD+++V L +++ ++ P + +
Sbjct: 255 -KTMEQLIKYEKEKEDNSILFLSDVWLDSERVMERL-DYLFGGYKDCPPFAMILMG---- 308
Query: 473 QYCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTS 532
+ ++ + L K I K+ + + + F+ VP + T +
Sbjct: 309 NFTEHPLINGTQYQLKKYFNQLAMV-----IQKYPNIHQFTQ---FIFVPGP-TDPTGSL 359
Query: 533 KVLSPALP--KFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPE 590
+ P P +F +P ST TNPCR++YCSQEI++ R++L +KM R+CI P
Sbjct: 360 LNILPKFPISNVFIKDFISLIPKSTFTTNPCRIRYCSQEIIIFRDDLTNKMRRHCILEPS 419
Query: 591 EG-DISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYTIQNT 649
+ DIS+H + + S L +L L P+YW+ A+S+YPLPDL+++GD+ N Y
Sbjct: 420 QSCDISQHLIELICSNSHLCNLTLEDKPIYWNYDHAMSVYPLPDLLVIGDKSNQYEHSRA 479
Query: 650 DCIF-INPVFHNT 661
D + +NP +T
Sbjct: 480 DGTYSMNPSSFST 492
>WB|WBGene00017237 [details] [associations]
symbol:pole-2 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA] [GO:0006260 "DNA
replication" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006261 "DNA-dependent DNA replication" evidence=IEA]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0002009 "morphogenesis of an epithelium" evidence=IMP]
[GO:0040011 "locomotion" evidence=IMP] [GO:0040035 "hermaphrodite
genitalia development" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
InterPro:IPR007185 InterPro:IPR016266 Pfam:PF04042
PIRSF:PIRSF000799 GO:GO:0005634 GO:GO:0009792 GO:GO:0002009
GO:GO:0040007 GO:GO:0002119 GO:GO:0003677 GO:GO:0010171
GO:GO:0040011 GO:GO:0006261 GO:GO:0040035 GO:GO:0003887
eggNOG:NOG311342 KO:K02325 GeneTree:ENSGT00390000012435
InterPro:IPR024639 Pfam:PF12213 EMBL:FO080903 PIR:T29484
RefSeq:NP_501489.2 ProteinModelPortal:Q19196 STRING:Q19196
PaxDb:Q19196 EnsemblMetazoa:F08B4.5.2 GeneID:177673
KEGG:cel:CELE_F08B4.5 UCSC:F08B4.5 CTD:177673 WormBase:F08B4.5
HOGENOM:HOG000021674 InParanoid:Q19196 OMA:PNHFVKT NextBio:897872
Uniprot:Q19196
Length = 534
Score = 370 (135.3 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 105/353 (29%), Positives = 173/353 (49%)
Query: 308 KLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQLDLSQ-TSYHPGLYTENC 366
K E L S T VVLGM++Q K + Y +ED +G V+++ + T +H L+ E+
Sbjct: 151 KFTTCEILGSSTKHLQSVVVLGMLTQQKADCYHIEDLSGSVEVEFKEDTKFHHALFHEHS 210
Query: 367 IVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG-NQNIWGGPSPVSLKSVNRMTKMEKN 425
I + EG +++ +L V+ + P E+++ +R N+N +GG ++ + +R+
Sbjct: 211 IAIFEGTFENSVLTVNEVAMVPVESAEVTRKELSSNENWFGGDDKIAFRCSDRLRSALAK 270
Query: 426 NENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTMATNPCRVQYCSQEILVVREE 485
E+ +V LSDV LD+ KV + + + QG+ +A C +CS+ +
Sbjct: 271 QEDTSLVFLSDVFLDDKKVMKAVFKLL----QGYKDQPPVAIVFCG-NFCSRPRQTDTID 325
Query: 486 LLSKMCRNCIKFPEEGDISKHVSKNNGEKDIIFLIVPKIYVEGTVTSKVLSPALPKFITS 545
LL + R + + K K IF+ P TV + P LP +
Sbjct: 326 LLDRGFRWLAN--QLTPLRKDYEKTQ----FIFVPGPDDPFVDTVLPR---PHLPSLLFK 376
Query: 546 EFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGDISKHFVRTLVSQ 605
+ + T A+NPCR+Q+ SQEI+V R +L+ K CR+ I I + R+++SQ
Sbjct: 377 HISPII-SCTFASNPCRIQFASQEIVVFRSDLIKKTCRHSINSITVESIPSRYARSVLSQ 435
Query: 606 GTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNAYT--IQNTDCIFINP 656
L LP ++ PV +LSL+PLPDL+I D+ +T + D I NP
Sbjct: 436 AHLCPLPQHITPVLPDFSHSLSLHPLPDLLITADRFETFTEKVVGADTIVSNP 488
Score = 243 (90.6 bits), Expect = 2.6e-17, P = 2.6e-17
Identities = 66/252 (26%), Positives = 123/252 (48%)
Query: 229 CRTEINSEE-QIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDAKSKLFRERYNII 287
C+++ + ++ +V AF + +D+ ADS + S R+R+ I+
Sbjct: 78 CKSKGTQDAGKLLNVFDAFSLQPYDFDADLRKMVLRKEKTSLAADSSSFSHAARQRFFIV 137
Query: 288 RQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGI 347
+QR +R + N K E L S T VVLGM++Q K + Y +ED +G
Sbjct: 138 KQRAMRCASLKNF-------KFTTCEILGSSTKHLQSVVVLGMLTQQKADCYHIEDLSGS 190
Query: 348 VQLDLSQ-TSYHPGLYTENCIVLVEGHYKDQILHVDALGFPPPEASKNSRLYFG-NQNIW 405
V+++ + T +H L+ E+ I + EG +++ +L V+ + P E+++ +R N+N +
Sbjct: 191 VEVEFKEDTKFHHALFHEHSIAIFEGTFENSVLTVNEVAMVPVESAEVTRKELSSNENWF 250
Query: 406 GGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFITSEFQGFVPNSTM 465
GG ++ + +R+ E+ +V LSDV LD+ KV + + + QG+ +
Sbjct: 251 GGDDKIAFRCSDRLRSALAKQEDTSLVFLSDVFLDDKKVMKAVFKLL----QGYKDQPPV 306
Query: 466 ATNPCRVQYCSQ 477
A C +CS+
Sbjct: 307 AIVFCG-NFCSR 317
Score = 99 (39.9 bits), Expect = 1.6e-38, Sum P(2) = 1.6e-38
Identities = 31/117 (26%), Positives = 48/117 (41%)
Query: 13 DLIEFTTNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDAKSK 72
+LI T +C ++ +V AF + +D+ ADS + S
Sbjct: 69 ELIRDTFRQCKSKGTQDAGKLLNVFDAFSLQPYDFDADLRKMVLRKEKTSLAADSSSFSH 128
Query: 73 LFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLK 129
R+R+ I++QR +R + N K E L S T VVLGM++Q K
Sbjct: 129 AARQRFFIVKQRAMRCASLKNF-------KFTTCEILGSSTKHLQSVVVLGMLTQQK 178
>POMBASE|SPBP8B7.14c [details] [associations]
symbol:dpb2 "DNA polymerase epsilon catalytic subunit B,
Dpb2" species:4896 "Schizosaccharomyces pombe" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0006270 "DNA replication
initiation" evidence=IMP] [GO:0008622 "epsilon DNA polymerase
complex" evidence=ISO] [GO:0031261 "DNA replication preinitiation
complex" evidence=IC] [GO:0003887 "DNA-directed DNA polymerase
activity" evidence=IMP] InterPro:IPR007185 InterPro:IPR016266
Pfam:PF04042 PIRSF:PIRSF000799 PomBase:SPBP8B7.14c GO:GO:0005829
GO:GO:0003677 EMBL:CU329671 GenomeReviews:CU329671_GR GO:GO:0031261
GO:GO:0006270 GO:GO:0008622 GO:GO:0003887 PIR:T40808
RefSeq:NP_596521.1 IntAct:O94263 STRING:O94263
EnsemblFungi:SPBP8B7.14c.1 GeneID:2541347 KEGG:spo:SPBP8B7.14c
eggNOG:NOG311342 KO:K02325 OMA:STEQWEC OrthoDB:EOG4T4H3M
NextBio:20802456 Uniprot:O94263
Length = 594
Score = 276 (102.2 bits), Expect = 7.5e-21, P = 7.5e-21
Identities = 111/447 (24%), Positives = 192/447 (42%)
Query: 220 NWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDAKSKL 279
++L S+ R I +E+ F V+ AF +P+F Y A + A + +
Sbjct: 120 SFLNSSNSEIRETIKNEKY-FRVLDAFKMPKFKYDSSRKVFVLSKQSPTLMASASACTDM 178
Query: 280 FRERYNIIRQRTLRHSLFNNINPN-ADSVKLDWVEYLMSLTNV----NHKTVVLGMISQL 334
R+N++ R LR+ F P+ + S L + N+ + ++ G+++
Sbjct: 179 LNRRFNVVYSRILRNESFQT--PSFSGSFSQTGTYQLTPIRNLLGRAGNTFLLFGLLTIA 236
Query: 335 KENRYFLEDPTGIVQLDLSQTSYHPGLYTENCIVLVEGHYKDQILH-VDALGFPPPEASK 393
+ +LED VQLD+SQ GL+ C+VLV G + L V LG PP E
Sbjct: 237 PDGTLWLEDLDSQVQLDVSQAEQGFGLFCPGCLVLVNGQFLSSGLFLVFELGHPPIERRD 296
Query: 394 NSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENAMIVILSDVHLDNDKVRNNLCEFIT 453
S N +I G + K + + E+ ++ V +S+VHLDN + L E I
Sbjct: 297 ASLKALNNLDILG--LNMDAKQLALLRHAEQAYQSQAFVCISEVHLDNHQTFYAL-EKIF 353
Query: 454 SEFQGF--VPNSTMATNPCRVQ-YCSQEILVVREELLSKMCRNCIKFPEEGDISKHVSKN 510
+++ VP + + + + +E +K+ + KFP+ + +K
Sbjct: 354 QKYESSEAVPFCIILCGSFMSSAFHNSGSSIQYKEGFNKLAASLEKFPKICEKTK----- 408
Query: 511 NGEKDIIFLIVPKIYVEGTVTSKVLSP--ALPKFITSEFQGFVPNSTMATNPCRVQYCSQ 568
F+ VP T L P ++P + Q ++ A+NPCR+ + SQ
Sbjct: 409 -------FIFVPGPNDPWTTNGISLMPKHSIPLHFVNRIQRVCKHTIFASNPCRIIFFSQ 461
Query: 569 EILVVREELLSKMCRNCIKF---PE-----------EGDI--SKHFVRTLVSQGTLVSLP 612
E+L+ R+++ + RN +KF P+ E + + V+T++ Q L P
Sbjct: 462 EVLIYRDDISGRFQRNSLKFGKTPQGTSNINSIPLAEQQVHQQRKLVKTVLDQSHLSPFP 521
Query: 613 LNLCPVYWSQYGALSLYPLPDLVILGD 639
P+ W ALS++PLP + L D
Sbjct: 522 SRTRPILWDFDYALSVFPLPSCMGLID 548
>SGD|S000006379 [details] [associations]
symbol:DPB2 "Second largest subunit of DNA polymerase II (DNA
polymerase epsilon)," species:4932 "Saccharomyces cerevisiae"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=IEA;IDA] [GO:0005634 "nucleus"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA;IDA]
[GO:0006260 "DNA replication" evidence=IEA] [GO:0007049 "cell
cycle" evidence=IEA] [GO:0016740 "transferase activity"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0008622 "epsilon DNA polymerase complex"
evidence=IDA] [GO:0006261 "DNA-dependent DNA replication"
evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0045005 "maintenance of fidelity involved in
DNA-dependent DNA replication" evidence=IMP] [GO:0042276
"error-prone translesion synthesis" evidence=IMP;IDA] [GO:0070868
"heterochromatin organization involved in chromatin silencing"
evidence=IC] [GO:0016779 "nucleotidyltransferase activity"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 SGD:S000006379
GO:GO:0005737 GO:GO:0003677 GO:GO:0007049 EMBL:BK006949
GO:GO:0070868 EMBL:U25842 GO:GO:0008622 GO:GO:0003887 GO:GO:0042276
eggNOG:NOG311342 KO:K02325 OrthoDB:EOG4T4H3M EMBL:M61710 PIR:S59833
RefSeq:NP_015501.2 ProteinModelPortal:P24482 DIP:DIP-2533N
IntAct:P24482 MINT:MINT-532205 STRING:P24482 PaxDb:P24482
EnsemblFungi:YPR175W GeneID:856305 KEGG:sce:YPR175W CYGD:YPR175w
GeneTree:ENSGT00390000012435 HOGENOM:HOG000246706 OMA:GSIEYKE
NextBio:981670 Genevestigator:P24482 GermOnline:YPR175W
GO:GO:0045005 Uniprot:P24482
Length = 689
Score = 174 (66.3 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 80/327 (24%), Positives = 153/327 (46%)
Query: 291 TLRHSLFN-NINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTGIVQ 349
+L++ L N N + S+ + ++ L+ N ++LG++++ + + LEDP+G V+
Sbjct: 249 SLQNELSNTNRQQQSSSMSITPIKNLLGRDAQNF--LLLGLLNKNFKGNWSLEDPSGSVE 306
Query: 350 LDLSQTSYHPG-LYTENCIVLVEGHYKD--QILHVDALGFPPPEASKNSRLYFGNQNIWG 406
+D+SQT G Y C+VLVEG Y HV ++ PP E + + GN ++ G
Sbjct: 307 IDISQTIPTQGHYYVPGCMVLVEGIYYSVGNKFHVTSMTLPPGERREITLETIGNLDLLG 366
Query: 407 --GPSPVSL-----KSVN-RMTKMEKNNENAMIVIL-SDVHLDNDKVRNNLCEFITSEFQ 457
G S + K + R+ +EK + VIL +++ LD+ K+ L + I +
Sbjct: 367 IHGISNNNFIARLDKDLKIRLHLLEKELTDHKFVILGANLFLDDLKIMTALSK-ILQKLN 425
Query: 458 GFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEEGD-ISKHVSK-NNGEKD 515
P + + S + + S+ + +F D ++ +S+ +N ++
Sbjct: 426 DDPPTLLIWQG----SFTSVPVFA---SMSSRNISSSTQFKNNFDALATLLSRFDNLTEN 478
Query: 516 IIFLIVPKIY-VEGTVTSKVLSPALPK-----FITSEFQGFVPNSTMATNPCRVQYCSQE 569
+ +P + G++ S S LP+ T + N ++NP R+ Y SQE
Sbjct: 479 TTMIFIPGPNDLWGSMVSLGASGTLPQDPIPSAFTKKINKVCKNVVWSSNPTRIAYLSQE 538
Query: 570 ILVVREELLSKMCRNCIKFP--EEGDI 594
I++ R++L + R+ ++FP E D+
Sbjct: 539 IVIFRDDLSGRFKRHRLEFPFNESEDV 565
Score = 89 (36.4 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 22/77 (28%), Positives = 39/77 (50%)
Query: 587 KFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGDQLNA-YT 645
+ P++ ++ V+T++ QG L +L P+ W L+L P+P ++L D +A +
Sbjct: 591 QLPQKVQETRKLVKTILDQGHLSPFLDSLRPISWDLDHTLTLCPIPSTMVLCDTTSAQFD 650
Query: 646 IQNTDCIFINP--VFHN 660
+ C INP HN
Sbjct: 651 LTYNGCKVINPGSFIHN 667
Score = 84 (34.6 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 19/68 (27%), Positives = 39/68 (57%)
Query: 453 TSEFQGFVPNSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFP--EEGDI-SKHVSK 509
T + N ++NP R+ Y SQEI++ R++L + R+ ++FP E D+ +++ +
Sbjct: 513 TKKINKVCKNVVWSSNPTRIAYLSQEIVIFRDDLSGRFKRHRLEFPFNESEDVYTENDNM 572
Query: 510 NNGEKDII 517
+ + DI+
Sbjct: 573 MSKDTDIV 580
Score = 56 (24.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 22/85 (25%), Positives = 38/85 (44%)
Query: 66 DSDAKSKLFRERYNIIRQRTLRHSLFNN---INPNADSVKLDWVEYLMSLTNVNHK---- 118
D + K ++F RY + R +R+ F N NP + V L + +S TN +
Sbjct: 210 DIEDKVQMFLTRYYLTNDRVMRNENFQNSDMFNPLSSMVSL---QNELSNTNRQQQSSSM 266
Query: 119 --TVVLGMISQLKENITTSGLLGKH 141
T + ++ + +N GLL K+
Sbjct: 267 SITPIKNLLGRDAQNFLLLGLLNKN 291
Score = 51 (23.0 bits), Expect = 1.1e-14, Sum P(3) = 1.1e-14
Identities = 13/41 (31%), Positives = 20/41 (48%)
Query: 272 DSDAKSKLFRERYNIIRQRTLRHSLFNN---INPNADSVKL 309
D + K ++F RY + R +R+ F N NP + V L
Sbjct: 210 DIEDKVQMFLTRYYLTNDRVMRNENFQNSDMFNPLSSMVSL 250
>ASPGD|ASPL0000068420 [details] [associations]
symbol:AN7439 species:162425 "Emericella nidulans"
[GO:0003697 "single-stranded DNA binding" evidence=IEA] [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0008622 "epsilon DNA polymerase complex"
evidence=IEA] [GO:0045005 "maintenance of fidelity involved in
DNA-dependent DNA replication" evidence=IEA] [GO:0042276
"error-prone translesion synthesis" evidence=IEA] [GO:0006270 "DNA
replication initiation" evidence=IEA] InterPro:IPR007185
Pfam:PF04042 GO:GO:0003677 GO:GO:0006260 EMBL:AACD01000129
EMBL:BN001304 GO:GO:0003887 eggNOG:NOG311342 KO:K02325
OrthoDB:EOG4T4H3M OMA:GSIEYKE RefSeq:XP_680708.1 STRING:Q5AW91
EnsemblFungi:CADANIAT00000530 GeneID:2869644 KEGG:ani:AN7439.2
HOGENOM:HOG000162438 Uniprot:Q5AW91
Length = 743
Score = 124 (48.7 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 44/154 (28%), Positives = 67/154 (43%)
Query: 242 VISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDAKSKLFRERYNIIRQRTLRHSLF---- 297
VI AFD P+ Y + K+ LFR+RYN++ QR LR+ LF
Sbjct: 184 VIGAFDTPRLAYNAEKKNFEVTKIKPSLFPEPSHKTALFRDRYNLVHQRLLRNELFQVPL 243
Query: 298 -----------NNINPNADSVKLDWVEYLMSLTNVNHKTVVLGMISQLKENRYFLEDPTG 346
++ + KL V L+ + +H ++LG++S L D TG
Sbjct: 244 ASASMPTLQRSSSTFARSQCYKLTPVANLLGRSGTSH--LLLGLLSISPTGELSLTDLTG 301
Query: 347 IVQLDLSQTSYHP--GLY-TENCIVLVEGHYKDQ 377
+ LDLS P G + T VLV+G Y+++
Sbjct: 302 SIVLDLSHARLIPKGGAWLTPGMFVLVDGIYEEE 335
Score = 101 (40.6 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 18/63 (28%), Positives = 35/63 (55%)
Query: 595 SKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPDLVILGD-QLNAYTIQNTDCIF 653
++ +++++ QGT+ P ++ P+ W +L LYPLP IL D ++ + + C
Sbjct: 650 ARKLIKSVLDQGTMSPFPQSVRPILWDYASSLQLYPLPTAFILADPEIAPFCLTYEGCHV 709
Query: 654 INP 656
+NP
Sbjct: 710 MNP 712
Score = 94 (38.1 bits), Expect = 2.5e-07, Sum P(4) = 2.5e-07
Identities = 24/73 (32%), Positives = 34/73 (46%)
Query: 19 TNECCRTEINSEEQIFSVISAFDIPQFDYXXXXXXXXXXXXXXXXCADSDAKSKLFRERY 78
+N+ T I+ I VI AFD P+ Y + K+ LFR+RY
Sbjct: 168 SNKSDDTVIHPRHWI-KVIGAFDTPRLAYNAEKKNFEVTKIKPSLFPEPSHKTALFRDRY 226
Query: 79 NIIRQRTLRHSLF 91
N++ QR LR+ LF
Sbjct: 227 NLVHQRLLRNELF 239
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 467 TNPCRVQYCS--QEILVVREELLSKMCRNCI 495
TNP R+ +I ++R+++ S++ RN +
Sbjct: 576 TNPSRISLFGPVHDIAILRDDISSRLRRNAV 606
Score = 48 (22.0 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 9/31 (29%), Positives = 19/31 (61%)
Query: 558 TNPCRVQYCS--QEILVVREELLSKMCRNCI 586
TNP R+ +I ++R+++ S++ RN +
Sbjct: 576 TNPSRISLFGPVHDIAILRDDISSRLRRNAV 606
Score = 44 (20.5 bits), Expect = 1.8e-10, Sum P(4) = 1.8e-10
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 426 NENAMIVILSDVHLDNDKVRNNL 448
N IVI+ +V+LDN K + L
Sbjct: 427 NRRFKIVIMGEVNLDNMKTMDAL 449
>CGD|CAL0000130 [details] [associations]
symbol:DPB2 species:5476 "Candida albicans" [GO:0003887
"DNA-directed DNA polymerase activity" evidence=IEA;ISS]
[GO:0006281 "DNA repair" evidence=ISS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=ISS] [GO:0008622
"epsilon DNA polymerase complex" evidence=ISS] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] [GO:0006270 "DNA replication initiation"
evidence=IEA] InterPro:IPR007185 Pfam:PF04042 CGD:CAL0000130
GO:GO:0003677 GO:GO:0006281 EMBL:AACQ01000032 GO:GO:0006271
GO:GO:0008622 GO:GO:0003887 eggNOG:NOG311342 KO:K02325
RefSeq:XP_719326.1 STRING:Q5ACS8 GeneID:3639026 KEGG:cal:CaO19.7564
Uniprot:Q5ACS8
Length = 708
Score = 110 (43.8 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 34/124 (27%), Positives = 60/124 (48%)
Query: 324 KTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHY-------- 374
K ++ G++S+ + Y LED T ++L+LSQ GL Y +LVEG Y
Sbjct: 263 KFLIFGLLSKNANDEYTLEDETDHIELNLSQAFKSQGLFYCPGMFLLVEGIYSASGGNSN 322
Query: 375 KDQ-----ILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENA 429
+D +V +G PP E + S +GN + G ++ + ++TK+ K +
Sbjct: 323 QDHGYIGGCFYVSNIGHPPSERRETSLDVYGNLDFLGMHRQIAPVTGEKITKISKKFKKR 382
Query: 430 MIVI 433
+++I
Sbjct: 383 LVLI 386
Score = 105 (42.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 538 ALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE 591
++PK + + +P N ++ NP R+ Y SQE++V ++EL++K+ RN I FP +
Sbjct: 523 SIPKVFINRLEKLLPKGNLVVSWNPTRINYLSQELVVFKDELMTKLKRNDIIFPRD 578
Score = 94 (38.1 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 462 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE 500
N ++ NP R+ Y SQE++V ++EL++K+ RN I FP +
Sbjct: 540 NLVVSWNPTRINYLSQELVVFKDELMTKLKRNDIIFPRD 578
Score = 70 (29.7 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 575 EELLSKMCRNC-IKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
EE ++ + +N P + ++ V+T++ QG L NL + + +L + PLP
Sbjct: 595 EERINNLIQNKNTHLPSKIKQARKLVKTILDQGNLQPFLKNLKLINLAYDYSLRIEPLPS 654
Query: 634 LVILGDQ-LNAYTIQNTDCIFIN 655
++IL D + + + C +N
Sbjct: 655 VIILNDSSFDNFEVTYNGCKVVN 677
Score = 66 (28.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 27/105 (25%), Positives = 49/105 (46%)
Query: 360 GLYTENCIVLVEGH-YKDQILHVDALGFPPPEASKNSRLYFGNQNIWG-----GP----- 408
G+Y+ + + H Y +V +G PP E + S +GN + G P
Sbjct: 312 GIYSASGGNSNQDHGYIGGCFYVSNIGHPPSERRETSLDVYGNLDFLGMHRQIAPVTGEK 371
Query: 409 -SPVSLKSVNRMTKMEKNNENAMIVIL-SDVHLDNDKVRNNLCEF 451
+ +S K R+ +EK N ++ + +D++LD+ KV + L +F
Sbjct: 372 ITKISKKFKKRLVLIEKTLYNHKLIFVGTDLYLDDFKVLDGLRKF 416
>UNIPROTKB|Q5ACS8 [details] [associations]
symbol:DPB2 "Potential DNA polymerase epsilon subunit"
species:237561 "Candida albicans SC5314" [GO:0003887 "DNA-directed
DNA polymerase activity" evidence=ISS] [GO:0006271 "DNA strand
elongation involved in DNA replication" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0008622 "epsilon DNA polymerase
complex" evidence=ISS] InterPro:IPR007185 Pfam:PF04042
CGD:CAL0000130 GO:GO:0003677 GO:GO:0006281 EMBL:AACQ01000032
GO:GO:0006271 GO:GO:0008622 GO:GO:0003887 eggNOG:NOG311342
KO:K02325 RefSeq:XP_719326.1 STRING:Q5ACS8 GeneID:3639026
KEGG:cal:CaO19.7564 Uniprot:Q5ACS8
Length = 708
Score = 110 (43.8 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 34/124 (27%), Positives = 60/124 (48%)
Query: 324 KTVVLGMISQLKENRYFLEDPTGIVQLDLSQTSYHPGL-YTENCIVLVEGHY-------- 374
K ++ G++S+ + Y LED T ++L+LSQ GL Y +LVEG Y
Sbjct: 263 KFLIFGLLSKNANDEYTLEDETDHIELNLSQAFKSQGLFYCPGMFLLVEGIYSASGGNSN 322
Query: 375 KDQ-----ILHVDALGFPPPEASKNSRLYFGNQNIWGGPSPVSLKSVNRMTKMEKNNENA 429
+D +V +G PP E + S +GN + G ++ + ++TK+ K +
Sbjct: 323 QDHGYIGGCFYVSNIGHPPSERRETSLDVYGNLDFLGMHRQIAPVTGEKITKISKKFKKR 382
Query: 430 MIVI 433
+++I
Sbjct: 383 LVLI 386
Score = 105 (42.0 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 538 ALPKFITSEFQGFVP--NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE 591
++PK + + +P N ++ NP R+ Y SQE++V ++EL++K+ RN I FP +
Sbjct: 523 SIPKVFINRLEKLLPKGNLVVSWNPTRINYLSQELVVFKDELMTKLKRNDIIFPRD 578
Score = 94 (38.1 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 17/39 (43%), Positives = 28/39 (71%)
Query: 462 NSTMATNPCRVQYCSQEILVVREELLSKMCRNCIKFPEE 500
N ++ NP R+ Y SQE++V ++EL++K+ RN I FP +
Sbjct: 540 NLVVSWNPTRINYLSQELVVFKDELMTKLKRNDIIFPRD 578
Score = 70 (29.7 bits), Expect = 3.8e-10, Sum P(3) = 3.8e-10
Identities = 20/83 (24%), Positives = 40/83 (48%)
Query: 575 EELLSKMCRNC-IKFPEEGDISKHFVRTLVSQGTLVSLPLNLCPVYWSQYGALSLYPLPD 633
EE ++ + +N P + ++ V+T++ QG L NL + + +L + PLP
Sbjct: 595 EERINNLIQNKNTHLPSKIKQARKLVKTILDQGNLQPFLKNLKLINLAYDYSLRIEPLPS 654
Query: 634 LVILGDQ-LNAYTIQNTDCIFIN 655
++IL D + + + C +N
Sbjct: 655 VIILNDSSFDNFEVTYNGCKVVN 677
Score = 66 (28.3 bits), Expect = 1.2e-05, Sum P(3) = 1.2e-05
Identities = 27/105 (25%), Positives = 49/105 (46%)
Query: 360 GLYTENCIVLVEGH-YKDQILHVDALGFPPPEASKNSRLYFGNQNIWG-----GP----- 408
G+Y+ + + H Y +V +G PP E + S +GN + G P
Sbjct: 312 GIYSASGGNSNQDHGYIGGCFYVSNIGHPPSERRETSLDVYGNLDFLGMHRQIAPVTGEK 371
Query: 409 -SPVSLKSVNRMTKMEKNNENAMIVIL-SDVHLDNDKVRNNLCEF 451
+ +S K R+ +EK N ++ + +D++LD+ KV + L +F
Sbjct: 372 ITKISKKFKKRLVLIEKTLYNHKLIFVGTDLYLDDFKVLDGLRKF 416
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.320 0.136 0.413 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 707 650 0.00095 120 3 11 22 0.38 34
36 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 20
No. of states in DFA: 616 (65 KB)
Total size of DFA: 371 KB (2180 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 51.94u 0.09s 52.03t Elapsed: 00:00:37
Total cpu time: 51.95u 0.09s 52.04t Elapsed: 00:00:38
Start: Thu Aug 15 11:31:25 2013 End: Thu Aug 15 11:32:03 2013