RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy2623
         (707 letters)



>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 244

 Score = 30.3 bits (67), Expect = 0.65
 Identities = 29/227 (12%), Positives = 60/227 (26%), Gaps = 20/227 (8%)

Query: 62  KLCADSDAKSKLFRERYNIIRQRTLRHSLFNNINPNADSVKLDWVEYLMSLTNVNHKTVV 121
            +  D D K++L   +Y  +R+     +   ++N NA  + L  V           K   
Sbjct: 2   GITYDEDRKTQL-IAQYESVREVVNAEAKNVHVNENASKILLLVVS----------KLKP 50

Query: 122 LGMISQLKENITTSGLLGKHQSPHLNLLCLIWVKIFICTL------IFIFIILIISLCSF 175
              I  L ++          Q        L     +                +       
Sbjct: 51  ASDIQILYDHGVREFGENYVQELIEKAKLLPDDIKWHFIGGLQTNKCKDLAKVPNLYSVE 110

Query: 176 SFNSSQVPTDVQGPVTAFETY---HNLVPLILHPVIPVSNREQNNIMNWLKLSSECCRTE 232
           + +S +    +      F+           I        +   N    +  +        
Sbjct: 111 TIDSLKKAKKLNESRAKFQPDCNPILCNVQINTSHEDQKSGLNNEAEIFEVIDFFLSEEC 170

Query: 233 INSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKL 279
              +      I ++++   D   +     LV+ K+K+ A      KL
Sbjct: 171 KYIKLNGLMTIGSWNVSHEDSKENRDFATLVEWKKKIDAKFGTSLKL 217


>d1omwa3 d.144.1.7 (A:186-549) G-protein coupled receptor kinase 2
           {Cow (Bos taurus) [TaxId: 9913]}
          Length = 364

 Score = 28.9 bits (64), Expect = 2.3
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 8/91 (8%)

Query: 219 MNWLKLSSECCRTEINSEEQIFSVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSK 278
           ++W  +  +     +       +   AFDI  FD + D K  KL+D  ++L  +      
Sbjct: 271 LDWQMVFLQKYPPPLIPPRGEVNAADAFDIGSFDEE-DTKGIKLLDSDQELYRN------ 323

Query: 279 LFRERYNIIRQRTLRHSLFNNINPNADSVKL 309
            F    +   Q+ +  ++F+ IN   D ++ 
Sbjct: 324 -FPLTISERWQQEVAETVFDTINAETDRLEA 353



 Score = 27.4 bits (60), Expect = 6.3
 Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%)

Query: 35  SVISAFDIPQFDYDPDLKKFKLVDKKRKLCADSDAKSKLFRERYNIIRQRTLRHSLFNNI 94
           +   AFDI  FD + D K  KL+D  ++L  +       F    +   Q+ +  ++F+ I
Sbjct: 293 NAADAFDIGSFDEE-DTKGIKLLDSDQELYRN-------FPLTISERWQQEVAETVFDTI 344

Query: 95  NPNADSVKL 103
           N   D ++ 
Sbjct: 345 NAETDRLEA 353


>d1fftb2 f.17.2.1 (B:27-117) Cytochrome O ubiquinol oxidase, subunit
           II {Escherichia coli [TaxId: 562]}
          Length = 91

 Score = 27.0 bits (60), Expect = 2.5
 Identities = 8/60 (13%), Positives = 21/60 (35%), Gaps = 5/60 (8%)

Query: 151 LIWVKIFICTLIFIFIILIISLCSFSFNSSQVPTDVQGPVTAFETYHNLVPLILHPVIPV 210
           LI     +  ++ I  IL+    ++ + +S          +     H+     +   +P+
Sbjct: 17  LILTAFGLMLIVVIPAILMAVGFAWKYRASNKDAKYSPNWS-----HSNKVEAVVWTVPI 71


>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
           562]}
          Length = 213

 Score = 28.4 bits (63), Expect = 2.7
 Identities = 7/31 (22%), Positives = 9/31 (29%)

Query: 199 LVPLILHPVIPVSNREQNNIMNWLKLSSECC 229
             P       P       N  ++L L S  C
Sbjct: 150 AGPFSQVRFCPTGGISPANYRDYLALKSVLC 180


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.137    0.415 

Gapped
Lambda     K      H
   0.267   0.0510    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,665,656
Number of extensions: 126426
Number of successful extensions: 254
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 16
Length of query: 707
Length of database: 2,407,596
Length adjustment: 92
Effective length of query: 615
Effective length of database: 1,144,436
Effective search space: 703828140
Effective search space used: 703828140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (25.9 bits)